Query 017455
Match_columns 371
No_of_seqs 191 out of 1986
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02779 haloacid dehalogenase 100.0 1E-27 2.2E-32 230.8 21.0 224 82-367 38-269 (286)
2 COG0637 Predicted phosphatase/ 100.0 1.6E-27 3.4E-32 221.3 19.6 190 83-348 1-190 (221)
3 TIGR03351 PhnX-like phosphonat 100.0 2.2E-27 4.8E-32 218.6 19.3 211 84-369 1-218 (220)
4 TIGR01422 phosphonatase phosph 100.0 2.7E-27 5.9E-32 223.1 19.7 195 84-348 2-205 (253)
5 TIGR01449 PGP_bact 2-phosphogl 100.0 3E-27 6.5E-32 216.1 19.2 209 87-368 1-211 (213)
6 PRK13226 phosphoglycolate phos 100.0 4.5E-27 9.7E-32 219.0 19.2 211 84-371 12-225 (229)
7 PRK13288 pyrophosphatase PpaX; 99.9 6.3E-27 1.4E-31 215.0 17.6 207 82-369 1-209 (214)
8 PLN02770 haloacid dehalogenase 99.9 7E-27 1.5E-31 220.3 18.3 210 79-365 17-230 (248)
9 PLN03243 haloacid dehalogenase 99.9 1.4E-26 3.1E-31 220.0 19.7 209 81-367 21-231 (260)
10 PRK13478 phosphonoacetaldehyde 99.9 1.6E-26 3.6E-31 219.8 20.0 194 82-348 2-207 (267)
11 COG0546 Gph Predicted phosphat 99.9 4.5E-26 9.7E-31 211.2 19.6 214 82-370 2-217 (220)
12 PRK10826 2-deoxyglucose-6-phos 99.9 5.1E-26 1.1E-30 210.3 19.4 210 82-366 5-215 (222)
13 TIGR01990 bPGM beta-phosphoglu 99.9 3.2E-26 6.9E-31 204.6 17.1 184 86-344 1-185 (185)
14 PRK10563 6-phosphogluconate ph 99.9 5.4E-26 1.2E-30 209.7 18.4 186 82-346 2-188 (221)
15 PLN02575 haloacid dehalogenase 99.9 5E-26 1.1E-30 225.3 17.4 208 83-366 130-337 (381)
16 PRK11587 putative phosphatase; 99.9 1E-25 2.2E-30 208.0 18.3 202 82-366 1-203 (218)
17 PRK13222 phosphoglycolate phos 99.9 3.2E-25 6.9E-30 204.3 21.3 216 81-369 3-220 (226)
18 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 1.1E-25 2.5E-30 201.0 17.4 185 84-343 1-185 (185)
19 PLN02940 riboflavin kinase 99.9 1.8E-25 3.9E-30 223.3 18.7 207 82-366 9-216 (382)
20 TIGR02253 CTE7 HAD superfamily 99.9 3.8E-25 8.2E-30 203.5 19.1 208 84-366 2-220 (221)
21 PRK13225 phosphoglycolate phos 99.9 1.7E-25 3.8E-30 213.9 16.6 207 79-368 57-265 (273)
22 PRK10725 fructose-1-P/6-phosph 99.9 4.2E-25 9.1E-30 198.3 17.4 183 83-344 4-186 (188)
23 TIGR01454 AHBA_synth_RP 3-amin 99.9 3.9E-25 8.5E-30 201.8 15.7 198 87-368 1-201 (205)
24 PRK13223 phosphoglycolate phos 99.9 1.3E-24 2.9E-29 207.7 19.7 214 83-368 12-227 (272)
25 TIGR02254 YjjG/YfnB HAD superf 99.9 1.8E-24 3.9E-29 198.8 19.1 207 84-369 1-223 (224)
26 PRK09449 dUMP phosphatase; Pro 99.9 5.3E-24 1.2E-28 196.6 20.3 210 82-368 1-220 (224)
27 TIGR02252 DREG-2 REG-2-like, H 99.9 5.9E-24 1.3E-28 193.4 17.7 183 85-342 1-203 (203)
28 TIGR01428 HAD_type_II 2-haloal 99.9 6.3E-24 1.4E-28 192.7 15.0 186 84-347 1-195 (198)
29 PRK06698 bifunctional 5'-methy 99.9 9E-24 2E-28 215.9 17.4 210 82-368 239-451 (459)
30 PRK14988 GMP/IMP nucleotidase; 99.9 1.1E-23 2.5E-28 195.7 16.0 130 181-370 90-221 (224)
31 PLN02919 haloacid dehalogenase 99.9 2.2E-22 4.8E-27 223.0 22.8 209 81-365 72-284 (1057)
32 PLN02811 hydrolase 99.9 1.5E-22 3.3E-27 187.2 16.6 200 91-364 1-204 (220)
33 PRK10748 flavin mononucleotide 99.9 3.2E-22 6.9E-27 187.4 18.7 210 82-368 8-236 (238)
34 PF13419 HAD_2: Haloacid dehal 99.9 8E-23 1.7E-27 178.6 12.9 175 87-343 1-176 (176)
35 KOG2914 Predicted haloacid-hal 99.9 7.7E-22 1.7E-26 182.2 17.8 190 82-347 8-199 (222)
36 TIGR02247 HAD-1A3-hyp Epoxide 99.9 1.5E-22 3.3E-27 185.4 10.7 109 181-347 91-199 (211)
37 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 1.7E-21 3.7E-26 176.9 15.7 184 85-336 1-197 (197)
38 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 1.6E-21 3.4E-26 173.4 14.3 100 183-343 84-183 (183)
39 TIGR01993 Pyr-5-nucltdase pyri 99.9 1E-21 2.2E-26 176.3 12.6 177 86-343 2-184 (184)
40 PRK09456 ?-D-glucose-1-phospha 99.9 2.6E-21 5.7E-26 176.1 14.6 106 184-349 84-190 (199)
41 KOG3085 Predicted hydrolase (H 99.8 1.8E-20 3.9E-25 174.0 15.5 203 80-355 3-224 (237)
42 COG1011 Predicted hydrolase (H 99.8 1.4E-20 3.1E-25 173.5 14.3 126 182-368 97-224 (229)
43 PHA02597 30.2 hypothetical pro 99.8 2.5E-20 5.5E-25 169.0 14.1 192 84-367 2-195 (197)
44 TIGR00338 serB phosphoserine p 99.8 1.3E-19 2.8E-24 166.7 14.0 183 81-342 11-193 (219)
45 TIGR01549 HAD-SF-IA-v1 haloaci 99.8 2.5E-19 5.4E-24 155.9 13.1 154 86-337 1-154 (154)
46 PLN02954 phosphoserine phospha 99.8 5.1E-19 1.1E-23 163.3 16.0 209 82-368 10-221 (224)
47 TIGR01493 HAD-SF-IA-v2 Haloaci 99.8 5.2E-20 1.1E-24 163.5 7.9 167 86-336 1-175 (175)
48 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 4.9E-18 1.1E-22 153.4 15.2 114 183-347 79-193 (201)
49 TIGR01691 enolase-ppase 2,3-di 99.8 3.3E-17 7.1E-22 152.1 16.4 191 84-347 1-199 (220)
50 PRK11133 serB phosphoserine ph 99.7 1.1E-17 2.4E-22 163.6 13.6 183 81-342 107-289 (322)
51 KOG3109 Haloacid dehalogenase- 99.7 1.8E-17 3.8E-22 150.0 13.7 189 81-347 12-208 (244)
52 PRK08942 D,D-heptose 1,7-bisph 99.7 2.8E-17 6E-22 147.6 13.1 131 184-368 29-174 (181)
53 TIGR01656 Histidinol-ppas hist 99.7 2.5E-17 5.5E-22 143.3 11.4 108 185-346 28-147 (147)
54 PRK09552 mtnX 2-hydroxy-3-keto 99.7 1.6E-16 3.5E-21 146.9 12.0 110 182-341 72-184 (219)
55 TIGR01672 AphA HAD superfamily 99.7 1.3E-15 2.9E-20 142.7 15.5 109 183-355 113-223 (237)
56 PRK06769 hypothetical protein; 99.7 2.8E-16 6E-21 140.6 9.7 129 184-368 28-169 (173)
57 PRK13582 thrH phosphoserine ph 99.6 2.6E-15 5.7E-20 136.6 14.1 102 183-341 67-168 (205)
58 TIGR00213 GmhB_yaeD D,D-heptos 99.6 9.5E-16 2.1E-20 137.2 11.0 137 183-367 25-175 (176)
59 TIGR01664 DNA-3'-Pase DNA 3'-p 99.6 2E-15 4.3E-20 134.3 10.4 99 185-342 43-160 (166)
60 COG0560 SerB Phosphoserine pho 99.6 2.5E-14 5.4E-19 132.1 15.2 114 183-346 76-189 (212)
61 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.6 6.4E-14 1.4E-18 127.1 16.1 114 183-345 86-199 (202)
62 TIGR01452 PGP_euk phosphoglyco 99.6 6.7E-15 1.5E-19 141.2 9.2 113 185-354 144-257 (279)
63 TIGR01261 hisB_Nterm histidino 99.6 7.2E-15 1.6E-19 130.1 8.4 107 183-347 28-150 (161)
64 TIGR01489 DKMTPPase-SF 2,3-dik 99.6 4.2E-14 9E-19 126.2 13.0 115 183-340 71-185 (188)
65 cd01427 HAD_like Haloacid deha 99.6 3.8E-14 8.1E-19 118.0 11.6 117 183-343 23-139 (139)
66 TIGR02137 HSK-PSP phosphoserin 99.6 9.7E-14 2.1E-18 127.4 15.1 107 183-346 67-173 (203)
67 TIGR01685 MDP-1 magnesium-depe 99.5 8.9E-15 1.9E-19 131.0 7.0 108 182-348 43-161 (174)
68 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.5 1.1E-14 2.4E-19 138.3 7.2 127 185-368 121-252 (257)
69 TIGR01488 HAD-SF-IB Haloacid D 99.5 8.3E-14 1.8E-18 123.4 12.2 107 182-336 71-177 (177)
70 TIGR03333 salvage_mtnX 2-hydro 99.5 1.1E-13 2.5E-18 127.5 13.0 114 182-345 68-182 (214)
71 TIGR01662 HAD-SF-IIIA HAD-supe 99.5 5.3E-14 1.1E-18 119.6 9.2 100 184-344 25-131 (132)
72 TIGR01668 YqeG_hyp_ppase HAD s 99.5 9.8E-14 2.1E-18 123.8 10.3 105 182-354 41-146 (170)
73 PRK11590 hypothetical protein; 99.5 1.1E-12 2.3E-17 120.9 17.3 192 83-345 5-204 (211)
74 PF00702 Hydrolase: haloacid d 99.5 1.3E-13 2.9E-18 125.1 10.4 88 183-337 126-215 (215)
75 PRK10444 UMP phosphatase; Prov 99.4 8.7E-13 1.9E-17 124.7 12.3 61 306-366 180-245 (248)
76 PRK11009 aphA acid phosphatase 99.4 1.5E-12 3.2E-17 122.2 13.4 107 183-355 113-223 (237)
77 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.4 1.1E-12 2.5E-17 123.9 11.5 49 306-354 184-233 (249)
78 KOG1615 Phosphoserine phosphat 99.4 1.2E-11 2.7E-16 110.3 13.0 205 83-370 15-221 (227)
79 PLN02645 phosphoglycolate phos 99.3 2.1E-12 4.6E-17 125.9 8.4 63 306-368 236-305 (311)
80 PHA02530 pseT polynucleotide k 99.3 3.2E-12 7E-17 123.3 8.7 113 182-347 185-299 (300)
81 PRK05446 imidazole glycerol-ph 99.3 1E-11 2.2E-16 122.7 9.8 108 183-344 29-148 (354)
82 PF13242 Hydrolase_like: HAD-h 99.2 3.6E-12 7.9E-17 98.3 2.5 68 284-365 2-74 (75)
83 smart00577 CPDc catalytic doma 99.2 1E-11 2.2E-16 108.3 5.0 97 183-343 44-141 (148)
84 PRK08238 hypothetical protein; 99.2 4.1E-10 8.9E-15 115.7 17.3 98 181-345 69-166 (479)
85 COG0647 NagD Predicted sugar p 99.2 2.1E-10 4.6E-15 109.2 13.8 177 184-368 24-259 (269)
86 TIGR01544 HAD-SF-IE haloacid d 99.2 2.6E-10 5.6E-15 109.0 14.4 118 174-336 111-230 (277)
87 TIGR01686 FkbH FkbH-like domai 99.2 8.2E-11 1.8E-15 115.2 10.7 90 185-339 32-125 (320)
88 COG2179 Predicted hydrolase of 99.2 6.7E-11 1.5E-15 103.5 8.0 95 181-344 43-138 (175)
89 TIGR01681 HAD-SF-IIIC HAD-supe 99.2 6.1E-11 1.3E-15 100.9 6.7 89 184-335 29-126 (128)
90 TIGR02726 phenyl_P_delta pheny 99.1 9.9E-11 2.2E-15 104.5 7.4 83 193-344 43-125 (169)
91 TIGR01670 YrbI-phosphatas 3-de 99.1 1.6E-10 3.5E-15 101.4 8.1 86 192-347 36-121 (154)
92 TIGR01545 YfhB_g-proteo haloac 99.1 2.2E-09 4.7E-14 99.1 15.7 111 183-346 93-204 (210)
93 TIGR01456 CECR5 HAD-superfamil 99.1 1.5E-09 3.2E-14 106.4 13.8 73 291-370 231-320 (321)
94 TIGR01663 PNK-3'Pase polynucle 99.1 3.8E-10 8.2E-15 116.8 9.5 95 185-338 198-305 (526)
95 PRK10530 pyridoxal phosphate ( 99.1 7.8E-10 1.7E-14 104.8 10.8 37 306-342 204-240 (272)
96 PF06888 Put_Phosphatase: Puta 99.1 4.1E-09 8.9E-14 98.6 14.6 135 182-353 69-206 (234)
97 PF12689 Acid_PPase: Acid Phos 99.0 4.4E-10 9.5E-15 100.1 7.5 104 182-349 43-156 (169)
98 TIGR01460 HAD-SF-IIA Haloacid 99.0 2.7E-09 5.8E-14 100.1 12.9 41 306-346 194-236 (236)
99 PRK09484 3-deoxy-D-manno-octul 98.9 2E-09 4.3E-14 97.1 7.6 84 192-345 56-139 (183)
100 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.9 1E-09 2.2E-14 103.0 5.7 101 186-345 140-242 (242)
101 TIGR01533 lipo_e_P4 5'-nucleot 98.8 3.8E-08 8.2E-13 93.9 12.1 49 182-230 116-164 (266)
102 PTZ00445 p36-lilke protein; Pr 98.8 2E-08 4.4E-13 91.7 9.2 52 283-346 154-207 (219)
103 TIGR02244 HAD-IG-Ncltidse HAD 98.8 3.2E-08 6.9E-13 97.5 11.0 125 183-344 183-323 (343)
104 COG4229 Predicted enolase-phos 98.8 2.4E-07 5.3E-12 82.3 15.2 107 182-347 101-207 (229)
105 KOG2882 p-Nitrophenyl phosphat 98.8 8.2E-08 1.8E-12 91.6 12.9 83 279-369 211-298 (306)
106 COG0241 HisB Histidinol phosph 98.8 3.5E-08 7.5E-13 88.7 9.6 110 184-347 31-152 (181)
107 PF12710 HAD: haloacid dehalog 98.7 2.3E-08 5E-13 89.3 7.5 40 187-229 92-131 (192)
108 KOG3040 Predicted sugar phosph 98.7 8.2E-08 1.8E-12 87.0 10.5 170 185-369 24-255 (262)
109 KOG3120 Predicted haloacid deh 98.7 4E-07 8.8E-12 83.2 14.1 132 182-349 82-215 (256)
110 PRK01158 phosphoglycolate phos 98.7 5.2E-08 1.1E-12 90.1 8.5 40 305-344 161-200 (230)
111 TIGR01512 ATPase-IB2_Cd heavy 98.7 6.7E-08 1.5E-12 101.1 8.7 111 183-367 361-475 (536)
112 TIGR01482 SPP-subfamily Sucros 98.6 3.6E-08 7.9E-13 90.7 5.8 39 306-344 154-192 (225)
113 PRK00192 mannosyl-3-phosphogly 98.6 1.1E-07 2.3E-12 90.9 8.3 40 306-345 195-235 (273)
114 TIGR01487 SPP-like sucrose-pho 98.6 6.2E-09 1.3E-13 95.7 -0.5 39 306-344 152-190 (215)
115 TIGR01525 ATPase-IB_hvy heavy 98.6 8.3E-08 1.8E-12 100.8 7.5 47 183-232 383-430 (556)
116 COG4359 Uncharacterized conser 98.6 6.7E-07 1.4E-11 79.7 11.8 109 182-339 71-181 (220)
117 PRK10513 sugar phosphate phosp 98.6 2.7E-08 5.8E-13 94.4 2.4 40 305-344 200-239 (270)
118 PRK15126 thiamin pyrimidine py 98.6 2.5E-08 5.3E-13 95.0 1.9 40 305-344 192-231 (272)
119 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.5 6.7E-07 1.4E-11 84.0 10.5 93 183-338 23-116 (242)
120 TIGR01684 viral_ppase viral ph 98.5 4.1E-07 9E-12 87.3 8.2 47 187-236 149-195 (301)
121 TIGR02251 HIF-SF_euk Dullard-l 98.5 8.8E-08 1.9E-12 84.8 3.2 116 183-370 41-157 (162)
122 TIGR02463 MPGP_rel mannosyl-3- 98.5 9.1E-07 2E-11 81.5 9.8 37 306-342 184-220 (221)
123 COG0561 Cof Predicted hydrolas 98.4 9.9E-08 2.1E-12 90.4 3.0 40 305-344 193-232 (264)
124 TIGR01511 ATPase-IB1_Cu copper 98.4 5E-07 1.1E-11 95.1 7.6 42 183-227 404-445 (562)
125 PRK10976 putative hydrolase; P 98.4 2.3E-07 4.9E-12 87.9 4.2 40 305-344 194-233 (266)
126 PRK03669 mannosyl-3-phosphogly 98.4 5.9E-07 1.3E-11 85.7 6.8 39 305-343 191-232 (271)
127 PRK10671 copA copper exporting 98.3 1.5E-06 3.2E-11 95.6 8.4 87 183-340 649-735 (834)
128 PLN02887 hydrolase family prot 98.3 5.2E-06 1.1E-10 87.4 10.9 40 305-344 511-550 (580)
129 PF09419 PGP_phosphatase: Mito 98.2 1.1E-05 2.4E-10 71.9 9.7 97 184-347 59-167 (168)
130 PF11019 DUF2608: Protein of u 98.2 2.2E-05 4.8E-10 74.5 12.0 120 183-348 80-213 (252)
131 TIGR00099 Cof-subfamily Cof su 98.2 1.3E-05 2.8E-10 75.6 10.3 39 305-343 192-230 (256)
132 TIGR01485 SPP_plant-cyano sucr 98.2 3E-06 6.4E-11 79.8 5.9 42 306-347 172-213 (249)
133 PF06941 NT5C: 5' nucleotidase 98.1 6.6E-06 1.4E-10 74.5 6.7 32 321-352 139-170 (191)
134 PF08645 PNK3P: Polynucleotide 98.1 7.9E-06 1.7E-10 72.2 7.0 98 185-341 30-153 (159)
135 PHA03398 viral phosphatase sup 98.1 1E-05 2.2E-10 77.8 7.5 49 187-238 151-199 (303)
136 TIGR01522 ATPase-IIA2_Ca golgi 98.0 1.2E-05 2.6E-10 89.0 8.0 114 184-341 528-641 (884)
137 PF03767 Acid_phosphat_B: HAD 98.0 1.4E-05 3.1E-10 74.7 7.4 49 180-228 111-159 (229)
138 PLN02382 probable sucrose-phos 98.0 2E-05 4.4E-10 79.9 8.7 43 305-347 179-224 (413)
139 PRK11033 zntA zinc/cadmium/mer 98.0 2.3E-05 5.1E-10 85.1 9.0 43 184-229 568-610 (741)
140 TIGR02461 osmo_MPG_phos mannos 98.0 1.1E-05 2.3E-10 75.3 5.4 37 306-342 186-224 (225)
141 COG4087 Soluble P-type ATPase 97.9 5.8E-05 1.3E-09 63.9 8.6 116 182-369 28-145 (152)
142 COG1778 Low specificity phosph 97.9 3E-05 6.5E-10 67.6 6.2 82 193-343 44-125 (170)
143 TIGR01675 plant-AP plant acid 97.8 0.00017 3.6E-09 67.5 10.9 50 180-229 116-165 (229)
144 PRK14502 bifunctional mannosyl 97.8 0.00019 4.2E-09 76.2 12.1 39 305-343 617-657 (694)
145 PLN02177 glycerol-3-phosphate 97.8 0.00086 1.9E-08 69.6 16.6 102 185-344 111-215 (497)
146 TIGR01680 Veg_Stor_Prot vegeta 97.7 0.00022 4.7E-09 68.1 9.6 49 180-228 141-189 (275)
147 COG3700 AphA Acid phosphatase 97.7 0.00072 1.6E-08 60.3 11.9 108 185-356 115-224 (237)
148 smart00775 LNS2 LNS2 domain. T 97.7 0.00029 6.3E-09 62.1 9.5 26 185-210 28-53 (157)
149 TIGR01497 kdpB K+-transporting 97.6 8.8E-05 1.9E-09 79.4 6.6 44 184-230 446-489 (675)
150 TIGR01116 ATPase-IIA1_Ca sarco 97.6 0.00022 4.7E-09 79.4 9.1 42 184-228 537-578 (917)
151 KOG2630 Enolase-phosphatase E- 97.6 0.0017 3.6E-08 60.2 13.1 107 183-348 122-228 (254)
152 PLN02645 phosphoglycolate phos 97.5 0.00076 1.7E-08 65.9 11.1 92 185-342 45-136 (311)
153 PRK12702 mannosyl-3-phosphogly 97.5 5.6E-05 1.2E-09 72.9 2.6 37 306-342 213-251 (302)
154 PRK14010 potassium-transportin 97.5 0.00023 4.9E-09 76.3 7.2 44 184-230 441-484 (673)
155 PRK01122 potassium-transportin 97.5 0.00023 5E-09 76.4 6.9 44 184-230 445-488 (679)
156 COG2217 ZntA Cation transport 97.4 0.00045 9.7E-09 74.4 7.6 46 183-231 536-581 (713)
157 TIGR02250 FCP1_euk FCP1-like p 97.3 0.00033 7.2E-09 61.7 5.3 52 182-237 56-108 (156)
158 PF08235 LNS2: LNS2 (Lipin/Ned 97.2 0.0018 3.9E-08 57.0 8.9 40 185-224 28-67 (157)
159 PF05761 5_nucleotid: 5' nucle 97.2 0.00072 1.6E-08 69.2 7.3 126 183-344 182-324 (448)
160 COG5663 Uncharacterized conser 97.2 0.0023 4.9E-08 56.6 9.3 37 309-349 129-166 (194)
161 PRK10517 magnesium-transportin 97.1 0.0011 2.4E-08 73.7 7.3 42 183-227 549-590 (902)
162 PF13344 Hydrolase_6: Haloacid 97.1 0.0057 1.2E-07 49.8 9.6 50 183-232 13-62 (101)
163 TIGR01524 ATPase-IIIB_Mg magne 97.0 0.0015 3.3E-08 72.4 7.2 41 184-227 515-555 (867)
164 COG0474 MgtA Cation transport 96.9 0.0027 5.9E-08 70.7 8.9 121 183-346 546-667 (917)
165 PRK15122 magnesium-transportin 96.9 0.0022 4.8E-08 71.4 7.9 41 184-227 550-590 (903)
166 TIGR01647 ATPase-IIIA_H plasma 96.9 0.0029 6.3E-08 69.1 8.5 42 184-228 442-483 (755)
167 TIGR01657 P-ATPase-V P-type AT 96.8 0.0062 1.3E-07 69.0 10.7 42 183-227 655-696 (1054)
168 TIGR01523 ATPase-IID_K-Na pota 96.8 0.0035 7.6E-08 70.8 8.4 42 183-227 645-686 (1053)
169 COG4996 Predicted phosphatase 96.7 0.0032 7E-08 53.5 5.7 50 182-234 39-88 (164)
170 COG2503 Predicted secreted aci 96.7 0.016 3.6E-07 54.2 10.6 48 182-229 120-168 (274)
171 TIGR01517 ATPase-IIB_Ca plasma 96.6 0.0049 1.1E-07 69.0 7.5 42 184-228 579-620 (941)
172 KOG0207 Cation transport ATPas 96.4 0.0095 2.1E-07 64.7 7.8 44 183-229 722-765 (951)
173 TIGR01106 ATPase-IIC_X-K sodiu 96.3 0.012 2.6E-07 66.2 8.4 42 183-227 567-608 (997)
174 TIGR01484 HAD-SF-IIB HAD-super 96.2 0.0058 1.3E-07 55.3 4.6 37 306-342 168-204 (204)
175 TIGR01652 ATPase-Plipid phosph 96.0 0.014 3E-07 66.2 7.4 42 183-227 630-671 (1057)
176 PF08282 Hydrolase_3: haloacid 96.0 0.0077 1.7E-07 55.1 4.4 40 305-344 190-229 (254)
177 TIGR00685 T6PP trehalose-phosp 96.0 0.013 2.9E-07 55.0 6.0 41 306-346 172-219 (244)
178 COG5610 Predicted hydrolase (H 95.9 0.037 8E-07 56.1 9.0 104 183-344 98-202 (635)
179 TIGR01452 PGP_euk phosphoglyco 95.8 0.061 1.3E-06 51.5 9.9 45 185-229 19-63 (279)
180 PLN02499 glycerol-3-phosphate 95.8 0.07 1.5E-06 55.1 10.7 34 192-229 101-135 (498)
181 TIGR02471 sucr_syn_bact_C sucr 95.8 0.0083 1.8E-07 55.8 3.7 37 306-342 164-200 (236)
182 COG4030 Uncharacterized protei 95.8 0.64 1.4E-05 43.5 15.7 41 182-226 81-121 (315)
183 PLN03190 aminophospholipid tra 95.6 0.04 8.8E-07 63.0 8.8 41 183-226 725-765 (1178)
184 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.6 0.14 3E-06 48.4 11.1 53 185-237 18-70 (249)
185 TIGR01486 HAD-SF-IIB-MPGP mann 95.6 0.014 3.1E-07 54.9 4.4 41 305-345 180-222 (256)
186 KOG0202 Ca2+ transporting ATPa 95.4 0.047 1E-06 59.1 7.9 123 183-346 583-706 (972)
187 KOG0206 P-type ATPase [General 95.4 0.041 8.9E-07 62.0 7.7 66 158-226 624-690 (1151)
188 PF08282 Hydrolase_3: haloacid 95.3 0.046 9.9E-07 50.0 6.6 38 188-228 19-56 (254)
189 TIGR01494 ATPase_P-type ATPase 95.0 0.13 2.8E-06 53.5 9.8 40 184-226 347-386 (499)
190 PF05116 S6PP: Sucrose-6F-phos 95.0 0.03 6.5E-07 52.9 4.4 42 305-347 169-210 (247)
191 PRK10444 UMP phosphatase; Prov 94.8 0.42 9E-06 45.2 11.8 44 184-227 17-60 (248)
192 TIGR01458 HAD-SF-IIA-hyp3 HAD- 94.7 0.58 1.3E-05 44.3 12.5 49 185-233 22-70 (257)
193 PTZ00174 phosphomannomutase; P 93.9 0.048 1E-06 51.3 3.2 37 305-345 192-232 (247)
194 PRK10187 trehalose-6-phosphate 93.8 0.11 2.4E-06 49.5 5.6 43 305-347 178-223 (266)
195 PF03031 NIF: NLI interacting 93.8 0.033 7.1E-07 48.5 1.7 48 183-234 35-83 (159)
196 KOG2961 Predicted hydrolase (H 93.5 0.68 1.5E-05 40.7 9.3 37 315-351 137-174 (190)
197 KOG2470 Similar to IMP-GMP spe 93.3 0.17 3.7E-06 49.9 5.8 128 185-344 241-375 (510)
198 KOG2116 Protein involved in pl 92.8 0.3 6.5E-06 51.6 7.1 28 84-117 530-557 (738)
199 TIGR02245 HAD_IIID1 HAD-superf 92.6 0.57 1.2E-05 42.9 8.0 39 185-227 46-84 (195)
200 COG2216 KdpB High-affinity K+ 92.5 0.21 4.5E-06 51.7 5.5 43 185-230 448-490 (681)
201 PRK10187 trehalose-6-phosphate 92.5 0.27 5.9E-06 46.9 6.1 33 187-222 39-72 (266)
202 TIGR01460 HAD-SF-IIA Haloacid 91.8 1.6 3.5E-05 40.7 10.3 51 184-234 14-65 (236)
203 PLN02423 phosphomannomutase 91.8 0.14 3.1E-06 48.2 3.1 36 310-346 194-233 (245)
204 PF13344 Hydrolase_6: Haloacid 91.0 0.56 1.2E-05 38.0 5.5 31 87-117 1-32 (101)
205 PF05822 UMPH-1: Pyrimidine 5' 90.5 0.29 6.3E-06 46.3 3.8 60 174-237 80-139 (246)
206 TIGR01662 HAD-SF-IIIA HAD-supe 89.5 0.37 8.1E-06 40.3 3.4 14 85-98 1-14 (132)
207 TIGR01689 EcbF-BcbF capsule bi 88.7 0.26 5.6E-06 41.9 1.8 26 185-210 25-50 (126)
208 KOG0209 P-type ATPase [Inorgan 88.5 0.53 1.1E-05 51.2 4.3 137 182-347 673-836 (1160)
209 COG0647 NagD Predicted sugar p 87.6 0.82 1.8E-05 43.9 4.7 38 81-118 5-43 (269)
210 COG1877 OtsB Trehalose-6-phosp 87.3 5.2 0.00011 38.4 10.0 43 306-348 187-232 (266)
211 KOG3128 Uncharacterized conser 86.7 1 2.2E-05 42.7 4.6 41 182-225 136-176 (298)
212 PF06189 5-nucleotidase: 5'-nu 86.5 5.3 0.00012 38.1 9.4 33 310-347 229-261 (264)
213 KOG2882 p-Nitrophenyl phosphat 86.4 5.7 0.00012 38.6 9.6 46 183-228 37-82 (306)
214 TIGR01670 YrbI-phosphatas 3-de 86.3 0.37 8E-06 42.0 1.4 15 84-98 1-15 (154)
215 PLN02423 phosphomannomutase 86.2 0.74 1.6E-05 43.3 3.6 31 82-113 4-35 (245)
216 KOG2134 Polynucleotide kinase 86.0 1.3 2.8E-05 44.4 5.2 19 82-100 73-91 (422)
217 KOG4549 Magnesium-dependent ph 85.8 3.6 7.8E-05 35.1 7.0 67 184-258 44-110 (144)
218 PRK14501 putative bifunctional 85.4 1.6 3.5E-05 47.6 6.2 38 306-345 662-701 (726)
219 COG5083 SMP2 Uncharacterized p 85.1 2.5 5.3E-05 43.1 6.7 35 305-339 481-516 (580)
220 TIGR01658 EYA-cons_domain eyes 84.6 5 0.00011 38.0 8.0 48 306-353 219-266 (274)
221 PRK09484 3-deoxy-D-manno-octul 83.9 0.57 1.2E-05 42.0 1.6 16 83-98 20-35 (183)
222 PTZ00174 phosphomannomutase; P 83.9 1.1 2.4E-05 42.1 3.5 36 81-117 2-40 (247)
223 TIGR02726 phenyl_P_delta pheny 83.5 0.62 1.4E-05 41.5 1.6 18 82-99 5-22 (169)
224 PRK00192 mannosyl-3-phosphogly 83.4 2 4.3E-05 40.8 5.2 43 185-230 22-64 (273)
225 TIGR01681 HAD-SF-IIIC HAD-supe 83.3 0.65 1.4E-05 39.1 1.6 15 85-99 1-15 (128)
226 PLN02580 trehalose-phosphatase 83.0 2.7 5.9E-05 42.4 6.1 31 305-335 305-338 (384)
227 KOG0323 TFIIF-interacting CTD 82.1 1.8 4E-05 46.2 4.7 53 183-239 200-253 (635)
228 COG1778 Low specificity phosph 81.9 0.73 1.6E-05 40.6 1.4 61 81-153 5-77 (170)
229 PF06506 PrpR_N: Propionate ca 80.8 4.6 0.0001 35.9 6.3 33 310-347 121-153 (176)
230 TIGR01456 CECR5 HAD-superfamil 80.1 9.4 0.0002 37.4 8.7 43 185-227 17-64 (321)
231 PF09419 PGP_phosphatase: Mito 79.3 1.8 3.9E-05 38.7 3.0 21 81-101 38-58 (168)
232 KOG0210 P-type ATPase [Inorgan 77.4 20 0.00044 38.9 10.4 51 158-208 630-682 (1051)
233 KOG2469 IMP-GMP specific 5'-nu 77.0 4.2 9.1E-05 41.1 5.1 124 190-344 204-333 (424)
234 TIGR01487 SPP-like sucrose-pho 77.0 4.9 0.00011 36.5 5.3 44 183-229 17-60 (215)
235 TIGR02463 MPGP_rel mannosyl-3- 76.9 4.7 0.0001 36.7 5.2 37 188-227 20-56 (221)
236 COG4502 5'(3')-deoxyribonucleo 76.7 2.3 5E-05 36.9 2.8 49 183-232 67-118 (180)
237 TIGR02461 osmo_MPG_phos mannos 76.6 5 0.00011 37.2 5.3 41 185-228 16-56 (225)
238 COG0731 Fe-S oxidoreductases [ 75.8 13 0.00028 36.2 8.0 40 180-225 88-128 (296)
239 COG2179 Predicted hydrolase of 74.5 3.6 7.7E-05 36.7 3.5 36 82-117 26-64 (175)
240 PRK01158 phosphoglycolate phos 74.2 6.2 0.00013 36.0 5.3 43 184-229 20-62 (230)
241 KOG0204 Calcium transporting A 74.1 16 0.00034 40.5 8.7 42 183-227 646-687 (1034)
242 cd04728 ThiG Thiazole synthase 74.0 22 0.00047 33.8 8.7 101 182-349 102-209 (248)
243 PF03031 NIF: NLI interacting 73.8 1.7 3.7E-05 37.6 1.4 17 85-101 1-17 (159)
244 TIGR00213 GmhB_yaeD D,D-heptos 73.6 3.1 6.8E-05 36.7 3.0 13 85-97 2-14 (176)
245 COG3882 FkbH Predicted enzyme 73.1 16 0.00035 37.9 8.2 94 184-338 255-348 (574)
246 TIGR00099 Cof-subfamily Cof su 72.9 6.7 0.00015 36.6 5.3 41 185-228 17-57 (256)
247 PF08645 PNK3P: Polynucleotide 72.9 1.9 4.1E-05 37.9 1.4 16 85-100 1-16 (159)
248 COG0561 Cof Predicted hydrolas 72.7 7.2 0.00016 36.5 5.4 43 183-228 19-61 (264)
249 PRK14501 putative bifunctional 71.9 8 0.00017 42.3 6.2 35 185-222 515-550 (726)
250 PRK15126 thiamin pyrimidine py 71.6 7.3 0.00016 36.7 5.2 42 185-229 20-61 (272)
251 PRK00208 thiG thiazole synthas 71.6 27 0.00059 33.2 8.8 101 182-349 102-209 (250)
252 PRK11840 bifunctional sulfur c 71.1 29 0.00063 34.3 9.2 101 182-349 176-283 (326)
253 PRK10976 putative hydrolase; P 71.1 7.9 0.00017 36.2 5.3 43 184-229 19-61 (266)
254 PLN02205 alpha,alpha-trehalose 71.1 9.9 0.00022 42.5 6.8 28 310-337 774-801 (854)
255 PRK10513 sugar phosphate phosp 70.8 9.2 0.0002 35.9 5.7 40 186-228 22-61 (270)
256 TIGR02329 propionate_PrpR prop 70.7 31 0.00068 36.4 10.0 33 309-346 140-172 (526)
257 COG2099 CobK Precorrin-6x redu 70.2 32 0.00069 32.8 9.0 34 310-346 192-231 (257)
258 PF05152 DUF705: Protein of un 70.1 9.4 0.0002 36.9 5.5 51 185-238 143-193 (297)
259 PRK10530 pyridoxal phosphate ( 70.0 8.3 0.00018 36.0 5.2 40 186-228 22-61 (272)
260 TIGR00685 T6PP trehalose-phosp 69.8 2.7 5.9E-05 39.3 1.8 16 83-98 2-17 (244)
261 PRK12702 mannosyl-3-phosphogly 69.1 9.7 0.00021 37.2 5.4 43 185-230 19-61 (302)
262 TIGR02471 sucr_syn_bact_C sucr 68.9 3.6 7.7E-05 38.0 2.4 25 86-112 1-25 (236)
263 TIGR01482 SPP-subfamily Sucros 68.4 9.7 0.00021 34.5 5.1 41 185-228 16-56 (225)
264 TIGR01486 HAD-SF-IIB-MPGP mann 67.6 10 0.00022 35.4 5.3 39 187-228 19-57 (256)
265 TIGR03470 HpnH hopanoid biosyn 67.4 41 0.0009 32.9 9.6 29 182-210 82-110 (318)
266 TIGR01689 EcbF-BcbF capsule bi 65.9 13 0.00028 31.5 5.0 15 84-98 1-15 (126)
267 TIGR01668 YqeG_hyp_ppase HAD s 63.7 6.7 0.00015 34.6 3.0 19 82-100 23-41 (170)
268 PLN02580 trehalose-phosphatase 62.3 16 0.00035 36.9 5.8 16 84-99 119-134 (384)
269 COG3769 Predicted hydrolase (H 62.0 9.3 0.0002 35.8 3.6 36 82-117 5-41 (274)
270 PRK03669 mannosyl-3-phosphogly 61.9 14 0.00031 34.9 5.1 38 187-227 27-64 (271)
271 PRK00994 F420-dependent methyl 61.1 83 0.0018 29.8 9.6 46 287-344 69-116 (277)
272 PRK15424 propionate catabolism 60.7 62 0.0013 34.3 10.0 34 308-346 149-182 (538)
273 PRK06769 hypothetical protein; 60.4 9.9 0.00021 33.6 3.5 16 83-98 3-18 (173)
274 KOG3189 Phosphomannomutase [Li 59.4 8.1 0.00018 35.6 2.7 30 84-114 11-40 (252)
275 TIGR01685 MDP-1 magnesium-depe 59.4 5.7 0.00012 35.6 1.8 18 84-101 2-19 (174)
276 cd01766 Ufm1 Urm1-like ubiquit 59.0 13 0.00028 28.5 3.3 45 294-341 23-67 (82)
277 KOG1618 Predicted phosphatase 57.3 6.1 0.00013 38.8 1.6 32 316-347 296-343 (389)
278 PLN03017 trehalose-phosphatase 56.0 11 0.00023 38.0 3.1 40 305-344 287-333 (366)
279 PLN02151 trehalose-phosphatase 55.0 11 0.00024 37.7 3.1 32 305-336 273-307 (354)
280 TIGR01484 HAD-SF-IIB HAD-super 51.9 27 0.00058 31.1 4.9 37 185-224 18-54 (204)
281 TIGR00715 precor6x_red precorr 51.8 1.3E+02 0.0028 28.6 9.7 37 309-348 192-234 (256)
282 COG0036 Rpe Pentose-5-phosphat 51.3 2E+02 0.0043 26.9 10.5 41 185-226 94-134 (220)
283 TIGR02468 sucrsPsyn_pln sucros 50.8 15 0.00032 41.9 3.5 40 305-345 960-1002(1050)
284 PRK13762 tRNA-modifying enzyme 50.7 33 0.00071 33.8 5.6 30 181-210 139-168 (322)
285 TIGR01261 hisB_Nterm histidino 50.5 9.2 0.0002 33.6 1.6 15 85-99 2-16 (161)
286 KOG3107 Predicted haloacid deh 50.2 56 0.0012 33.0 7.0 39 306-345 414-452 (468)
287 KOG0203 Na+/K+ ATPase, alpha s 48.4 47 0.001 37.0 6.6 42 182-226 588-629 (1019)
288 PF05116 S6PP: Sucrose-6F-phos 48.3 14 0.0003 34.8 2.5 28 84-112 2-29 (247)
289 PF03671 Ufm1: Ubiquitin fold 47.2 6.1 0.00013 30.1 -0.1 41 294-337 23-63 (76)
290 PRK08005 epimerase; Validated 46.8 1E+02 0.0023 28.4 8.0 36 187-223 93-128 (210)
291 TIGR02245 HAD_IIID1 HAD-superf 46.8 14 0.00031 33.7 2.3 30 311-340 121-152 (195)
292 PTZ00445 p36-lilke protein; Pr 46.7 15 0.00032 34.2 2.3 16 82-97 41-56 (219)
293 PLN02205 alpha,alpha-trehalose 46.6 16 0.00034 40.9 3.0 17 83-99 595-611 (854)
294 PRK08883 ribulose-phosphate 3- 45.3 2.3E+02 0.0051 26.2 10.2 38 186-224 92-129 (220)
295 COG4850 Uncharacterized conser 44.2 87 0.0019 31.1 7.2 40 182-224 194-234 (373)
296 KOG1618 Predicted phosphatase 44.2 96 0.0021 30.8 7.4 43 185-227 52-99 (389)
297 COG4996 Predicted phosphatase 43.8 12 0.00026 32.2 1.2 17 85-101 1-17 (164)
298 TIGR02826 RNR_activ_nrdG3 anae 43.3 40 0.00087 29.2 4.4 26 185-210 73-98 (147)
299 smart00577 CPDc catalytic doma 42.9 16 0.00034 31.3 1.8 16 84-99 2-17 (148)
300 PRK08745 ribulose-phosphate 3- 41.0 1.7E+02 0.0037 27.2 8.5 36 187-223 97-132 (223)
301 PRK10076 pyruvate formate lyas 40.9 50 0.0011 30.5 4.9 37 185-222 51-88 (213)
302 PF05690 ThiG: Thiazole biosyn 40.3 2.5E+02 0.0054 26.7 9.3 100 182-347 102-207 (247)
303 PF02358 Trehalose_PPase: Treh 39.3 22 0.00048 32.8 2.3 43 305-347 169-219 (235)
304 PRK05301 pyrroloquinoline quin 37.4 71 0.0015 31.8 5.8 45 182-227 72-116 (378)
305 PF10307 DUF2410: Hypothetical 36.9 3E+02 0.0066 25.2 9.2 29 306-335 123-151 (197)
306 TIGR02109 PQQ_syn_pqqE coenzym 36.7 71 0.0015 31.4 5.6 45 182-227 63-107 (358)
307 PLN02887 hydrolase family prot 36.5 54 0.0012 35.0 5.0 41 184-227 325-365 (580)
308 CHL00162 thiG thiamin biosynth 36.1 3.4E+02 0.0073 26.1 9.6 103 182-350 116-224 (267)
309 PF13580 SIS_2: SIS domain; PD 35.8 1.8E+02 0.0039 24.5 7.3 127 165-344 1-137 (138)
310 PF04123 DUF373: Domain of unk 35.7 1.4E+02 0.0031 29.8 7.4 36 306-343 90-127 (344)
311 TIGR02495 NrdG2 anaerobic ribo 35.7 1.1E+02 0.0025 26.9 6.3 28 183-210 73-100 (191)
312 PRK13125 trpA tryptophan synth 35.1 2.6E+02 0.0057 26.0 9.0 29 320-348 187-218 (244)
313 TIGR01485 SPP_plant-cyano sucr 34.0 52 0.0011 30.5 4.0 38 187-227 24-61 (249)
314 TIGR03365 Bsubt_queE 7-cyano-7 33.4 41 0.00089 31.4 3.2 26 185-210 85-110 (238)
315 cd00733 GlyRS_alpha_core Class 33.2 46 0.00099 31.7 3.3 47 293-342 81-130 (279)
316 TIGR02251 HIF-SF_euk Dullard-l 33.1 25 0.00054 30.8 1.5 16 85-100 2-17 (162)
317 COG1663 LpxK Tetraacyldisaccha 32.9 1.9E+02 0.0041 28.8 7.7 25 186-210 63-87 (336)
318 KOG3483 Uncharacterized conser 32.6 43 0.00093 25.9 2.5 43 294-339 34-76 (94)
319 COG0159 TrpA Tryptophan syntha 32.4 2.4E+02 0.0051 27.2 8.1 54 146-209 48-103 (265)
320 PF02254 TrkA_N: TrkA-N domain 32.3 2.5E+02 0.0054 22.2 7.4 26 318-343 90-115 (116)
321 PF02350 Epimerase_2: UDP-N-ac 32.2 1.7E+02 0.0036 29.0 7.4 97 189-360 202-300 (346)
322 TIGR02250 FCP1_euk FCP1-like p 31.6 33 0.00072 30.0 2.1 19 83-101 5-23 (156)
323 COG0541 Ffh Signal recognition 31.6 1E+02 0.0022 31.8 5.7 30 315-344 211-247 (451)
324 cd07043 STAS_anti-anti-sigma_f 31.5 95 0.0021 23.6 4.6 37 191-232 61-97 (99)
325 PRK14502 bifunctional mannosyl 31.4 77 0.0017 34.6 5.1 41 186-229 435-475 (694)
326 PRK09348 glyQ glycyl-tRNA synt 30.9 51 0.0011 31.4 3.3 47 293-342 85-134 (283)
327 PF05152 DUF705: Protein of un 30.8 34 0.00074 33.2 2.1 23 306-328 234-257 (297)
328 PLN02334 ribulose-phosphate 3- 30.5 3.8E+02 0.0083 24.6 9.1 29 320-348 177-206 (229)
329 KOG1605 TFIIF-interacting CTD 30.2 18 0.00038 34.7 0.1 40 183-226 130-169 (262)
330 KOG2832 TFIIF-interacting CTD 29.8 88 0.0019 31.5 4.8 44 183-230 213-256 (393)
331 TIGR00262 trpA tryptophan synt 29.5 3.9E+02 0.0084 25.3 9.1 28 321-348 201-231 (256)
332 PF07859 Abhydrolase_3: alpha/ 29.4 46 0.001 29.4 2.7 36 294-329 44-82 (211)
333 PTZ00170 D-ribulose-5-phosphat 28.9 4.7E+02 0.01 24.2 9.7 30 319-348 174-205 (228)
334 TIGR00388 glyQ glycyl-tRNA syn 28.7 61 0.0013 31.1 3.4 47 293-342 82-131 (293)
335 CHL00076 chlB photochlorophyll 28.5 5.1E+02 0.011 27.2 10.6 57 306-367 366-431 (513)
336 cd05014 SIS_Kpsf KpsF-like pro 28.0 73 0.0016 25.9 3.5 26 185-210 59-84 (128)
337 cd05008 SIS_GlmS_GlmD_1 SIS (S 27.7 70 0.0015 26.0 3.3 25 186-210 59-83 (126)
338 TIGR02886 spore_II_AA anti-sig 27.3 1.3E+02 0.0028 23.7 4.7 36 191-231 62-97 (106)
339 COG1212 KdsB CMP-2-keto-3-deox 27.3 1.6E+02 0.0034 27.9 5.7 57 286-350 20-76 (247)
340 cd06831 PLPDE_III_ODC_like_AZI 26.9 4.4E+02 0.0095 26.5 9.5 31 313-343 76-108 (394)
341 PF14336 DUF4392: Domain of un 26.7 1.1E+02 0.0023 29.7 4.9 39 186-226 62-100 (291)
342 PF02358 Trehalose_PPase: Treh 26.3 1.2E+02 0.0026 27.9 5.0 13 88-100 1-13 (235)
343 COG1180 PflA Pyruvate-formate 26.3 1E+02 0.0022 29.4 4.5 28 183-210 95-122 (260)
344 cd01972 Nitrogenase_VnfE_like 26.2 6.9E+02 0.015 25.3 11.7 58 306-367 365-424 (426)
345 TIGR01283 nifE nitrogenase mol 25.7 5.9E+02 0.013 26.1 10.4 57 306-367 387-444 (456)
346 COG0241 HisB Histidinol phosph 25.6 44 0.00096 30.2 1.8 17 84-100 5-21 (181)
347 TIGR03278 methan_mark_10 putat 25.5 1.4E+02 0.0031 30.4 5.6 47 182-228 84-131 (404)
348 PF04413 Glycos_transf_N: 3-De 25.4 91 0.002 28.0 3.9 23 308-330 162-184 (186)
349 PLN03063 alpha,alpha-trehalose 25.4 44 0.00095 37.2 2.1 16 84-99 507-522 (797)
350 PLN03064 alpha,alpha-trehalose 25.3 38 0.00082 38.3 1.6 16 84-99 591-606 (934)
351 cd01012 YcaC_related YcaC rela 25.3 4.3E+02 0.0093 22.5 9.2 43 306-350 79-126 (157)
352 COG2022 ThiG Uncharacterized e 25.1 5.2E+02 0.011 24.6 8.7 102 181-348 108-215 (262)
353 PRK05446 imidazole glycerol-ph 24.6 45 0.00098 33.3 1.9 16 84-99 2-17 (354)
354 cd05710 SIS_1 A subgroup of th 24.2 96 0.0021 25.4 3.5 25 186-210 60-84 (120)
355 PRK05752 uroporphyrinogen-III 24.2 3.4E+02 0.0075 25.2 7.7 24 183-206 9-32 (255)
356 KOG1515 Arylacetamide deacetyl 23.4 1.2E+02 0.0026 30.1 4.5 38 294-331 138-180 (336)
357 TIGR00377 ant_ant_sig anti-ant 23.3 1.5E+02 0.0033 23.2 4.4 37 191-232 66-102 (108)
358 TIGR00236 wecB UDP-N-acetylglu 23.2 6.3E+02 0.014 24.4 9.8 40 306-347 78-120 (365)
359 COG0019 LysA Diaminopimelate d 23.0 2E+02 0.0044 29.1 6.2 39 306-345 86-126 (394)
360 PRK11145 pflA pyruvate formate 22.9 1.6E+02 0.0034 27.2 5.1 26 185-210 83-109 (246)
361 PF04007 DUF354: Protein of un 22.0 7.8E+02 0.017 24.4 11.4 36 190-229 17-52 (335)
362 TIGR01282 nifD nitrogenase mol 22.0 7E+02 0.015 25.8 10.1 34 306-344 396-429 (466)
363 PRK10537 voltage-gated potassi 22.0 7.8E+02 0.017 24.9 10.2 34 310-344 323-356 (393)
364 KOG0391 SNF2 family DNA-depend 21.9 1.9E+02 0.0041 33.9 6.0 19 191-209 1267-1285(1958)
365 TIGR02494 PFLE_PFLC glycyl-rad 21.8 1.4E+02 0.0031 28.4 4.7 28 183-210 136-164 (295)
366 PRK02910 light-independent pro 21.8 8.7E+02 0.019 25.5 10.9 36 306-346 354-389 (519)
367 PF02606 LpxK: Tetraacyldisacc 21.8 3.2E+02 0.007 26.9 7.2 25 186-210 51-75 (326)
368 cd04795 SIS SIS domain. SIS (S 21.7 95 0.0021 23.1 2.8 22 186-207 60-81 (87)
369 TIGR03127 RuMP_HxlB 6-phospho 21.6 1.1E+02 0.0023 26.8 3.5 26 185-210 84-109 (179)
370 cd04724 Tryptophan_synthase_al 21.5 5.8E+02 0.013 23.7 8.7 30 318-348 187-219 (242)
371 PF01890 CbiG_C: Cobalamin syn 21.2 2.3E+02 0.005 23.6 5.3 46 299-344 14-65 (121)
372 cd01976 Nitrogenase_MoFe_alpha 21.0 8.8E+02 0.019 24.6 12.1 36 306-346 361-396 (421)
373 cd05006 SIS_GmhA Phosphoheptos 20.6 1.1E+02 0.0025 26.7 3.5 26 185-210 113-138 (177)
374 TIGR03568 NeuC_NnaA UDP-N-acet 20.6 8.1E+02 0.018 24.2 9.9 25 321-345 284-308 (365)
375 PF01976 DUF116: Protein of un 20.5 1.8E+02 0.0039 25.5 4.7 35 188-227 74-108 (158)
376 PLN03017 trehalose-phosphatase 20.3 2.2E+02 0.0047 28.7 5.7 13 84-96 111-123 (366)
377 cd04906 ACT_ThrD-I_1 First of 20.1 1.6E+02 0.0035 22.6 3.8 21 188-208 54-74 (85)
No 1
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.96 E-value=1e-27 Score=230.77 Aligned_cols=224 Identities=28% Similarity=0.475 Sum_probs=160.4
Q ss_pred CCceEEEEecCCcccccc-ccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCC----CCC--
Q 017455 82 PRDLAVLLEVDGVLVDAY-RFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWP----TSV-- 154 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~-~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~----~~~-- 154 (371)
.++++|||||||||+|+. .. +..+|+++++++|++...|+.+.+..+.. .++....+... +...+++ ...
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~-~~~a~~~~l~~~G~~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~~~~~ 114 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDG-HRVAFNDAFKEFGLRPVEWDVELYDELLN-IGGGKERMTWY-FNENGWPTSTIEKAPK 114 (286)
T ss_pred cCCcEEEEeCceeEEccccHH-HHHHHHHHHHHcCCCCCCCCHHHHHHHHc-cCCChHHHHHH-HHHcCCCccccccCCc
Confidence 457999999999999999 87 89999999999998422366666555544 33334444333 3445555 111
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchh-e
Q 017455 155 PTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKI-K 233 (371)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~-~ 233 (371)
..++.+..++.+.+.+.+.|.+.+....++++||+.++|+.|+++|++++|+||+. ...+..+++.++...+|+. .
T Consensus 115 ~~e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~---~~~~~~~l~~~~~~~~~~~~~ 191 (286)
T PLN02779 115 DEEERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSN---EKAVSKIVNTLLGPERAQGLD 191 (286)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHhccccccCceE
Confidence 12222334445555556666666533446899999999999999999999999954 6777788887754444432 1
Q ss_pred eecchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHc
Q 017455 234 IVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYA 313 (371)
Q Consensus 234 i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~l 313 (371)
++++ +++. ..||+|++ |..+++++
T Consensus 192 ~v~~--------------~~~~----------------------------~~KP~p~~--------------~~~a~~~~ 215 (286)
T PLN02779 192 VFAG--------------DDVP----------------------------KKKPDPDI--------------YNLAAETL 215 (286)
T ss_pred EEec--------------cccC----------------------------CCCCCHHH--------------HHHHHHHh
Confidence 1122 2221 23888888 99999999
Q ss_pred CCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCCCCCcccccccccchHHHHhh
Q 017455 314 EKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLCRIL 367 (371)
Q Consensus 314 gv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~~~l 367 (371)
|++|++||||||+.+|+++|+++||++|++.+++....++..++.+++++.+..
T Consensus 216 ~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~ 269 (286)
T PLN02779 216 GVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVP 269 (286)
T ss_pred CcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcc
Confidence 999999999999999999999999999999988766666666677776666543
No 2
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=221.33 Aligned_cols=190 Identities=22% Similarity=0.305 Sum_probs=141.0
Q ss_pred CceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHH
Q 017455 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAF 162 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~ 162 (371)
++++|||||||||+|++.. +..+|.++++++|+. .+.+.+....+ +...+....+....+......
T Consensus 1 ~~~avIFD~DGvLvDse~~-~~~a~~~~~~~~g~~---~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~------- 66 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPL-HARAWLEALKEYGIE---ISDEEIRELHG---GGIARIIDLLRKLAAGEDPAD------- 66 (221)
T ss_pred CCcEEEEcCCCCcCcchHH-HHHHHHHHHHHcCCC---CCHHHHHHHHC---CChHHHHHHHHHHhcCCcccC-------
Confidence 3689999999999999998 999999999999987 45555555542 222333333333332221111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHh
Q 017455 163 VKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVER 242 (371)
Q Consensus 163 ~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~ 242 (371)
.....+........ .....++.||+.++|++|+++|+++++.|+ +....+...+..+|+.++|+.++ ++++
T Consensus 67 ~~~~~~~~~~~~~~--~~~~~~~~pGv~~~l~~L~~~~i~~avaS~---s~~~~~~~~L~~~gl~~~f~~~v-~~~d--- 137 (221)
T COG0637 67 LAELERLLYEAEAL--ELEGLKPIPGVVELLEQLKARGIPLAVASS---SPRRAAERVLARLGLLDYFDVIV-TADD--- 137 (221)
T ss_pred HHHHHHHHHHHHHh--hhcCCCCCccHHHHHHHHHhcCCcEEEecC---ChHHHHHHHHHHccChhhcchhc-cHHH---
Confidence 00111111112211 235688999999999999999999999999 44788999999999999988743 2222
Q ss_pred hhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEE
Q 017455 243 SLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFL 322 (371)
Q Consensus 243 ~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~ 322 (371)
+.++ ||+|++ |+.++++||++|++||+
T Consensus 138 -----------v~~~----------------------------KP~Pd~--------------yL~Aa~~Lgv~P~~Cvv 164 (221)
T COG0637 138 -----------VARG----------------------------KPAPDI--------------YLLAAERLGVDPEECVV 164 (221)
T ss_pred -----------HhcC----------------------------CCCCHH--------------HHHHHHHcCCChHHeEE
Confidence 2222 899999 99999999999999999
Q ss_pred EeCCHhhHHHHHHcCCcEEEECCCCC
Q 017455 323 IAGSQSGVAGAQRIGMPCVVMRSRCI 348 (371)
Q Consensus 323 IgDs~~Di~aA~~aGm~~v~v~~~~~ 348 (371)
|+|+.++|+||++|||.+|++..++.
T Consensus 165 iEDs~~Gi~Aa~aAGm~vv~v~~~~~ 190 (221)
T COG0637 165 VEDSPAGIQAAKAAGMRVVGVPAGHD 190 (221)
T ss_pred EecchhHHHHHHHCCCEEEEecCCCC
Confidence 99999999999999999999987554
No 3
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.95 E-value=2.2e-27 Score=218.59 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=157.3
Q ss_pred ceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHH-HHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHH
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTD-LLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAF 162 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~ 162 (371)
+|+||||+||||+|+... +..+|+++++++|.+ .+.+.+.. +.+ .....+...+....|.+ ...
T Consensus 1 ~k~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~---~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~--------~~~ 65 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGL-VYRALRQAVTAAGLS---PTPEEVQSAWMG---QSKIEAIRALLALDGAD--------EAE 65 (220)
T ss_pred CcEEEEecCCCeeccCch-HHHHHHHHHHHcCCC---CCHHHHHHhhcC---CCHHHHHHHHHhccCCC--------HHH
Confidence 479999999999999997 999999999999987 34444444 332 22334444555554532 112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc--ccchheeecchhH
Q 017455 163 VKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE--RISKIKIVGNEEV 240 (371)
Q Consensus 163 ~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~--~~f~~~i~~~~~~ 240 (371)
.+.+...+.+.+.+.......+++||+.++|+.|+++|++++|+||+ ....+..+++.+|+. ++|+.++.+. +.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~---~~~~~~~~l~~~~l~~~~~f~~i~~~~-~~ 141 (220)
T TIGR03351 66 AQAAFADFEERLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGF---DRDTAERLLEKLGWTVGDDVDAVVCPS-DV 141 (220)
T ss_pred HHHHHHHHHHHHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCC---chHHHHHHHHHhhhhhhccCCEEEcCC-cC
Confidence 33455555656655553445689999999999999999999999994 478899999999998 8988754322 21
Q ss_pred HhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCC-CCc
Q 017455 241 ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKP-VRN 319 (371)
Q Consensus 241 ~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~-p~e 319 (371)
. ..||+|++ |+.+++++|+. |++
T Consensus 142 --------------~----------------------------~~KP~p~~--------------~~~a~~~~~~~~~~~ 165 (220)
T TIGR03351 142 --------------A----------------------------AGRPAPDL--------------ILRAMELTGVQDVQS 165 (220)
T ss_pred --------------C----------------------------CCCCCHHH--------------HHHHHHHcCCCChhH
Confidence 1 12788888 99999999997 799
Q ss_pred EEEEeCCHhhHHHHHHcCCcE-EEECCCCCCCcccc--cccccchHHHHhhhh
Q 017455 320 CFLIAGSQSGVAGAQRIGMPC-VVMRSRCITTLPVS--KTQRLADMLCRILKS 369 (371)
Q Consensus 320 ~I~IgDs~~Di~aA~~aGm~~-v~v~~~~~~~~~l~--~~~~~~~~l~~~l~~ 369 (371)
|+||||+.+|+++|+++||.+ |++.++......+. .++.+++++.++++.
T Consensus 166 ~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~~~ 218 (220)
T TIGR03351 166 VAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLPAL 218 (220)
T ss_pred eEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHHHHh
Confidence 999999999999999999999 89988765554443 455677777666553
No 4
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.95 E-value=2.7e-27 Score=223.10 Aligned_cols=195 Identities=16% Similarity=0.123 Sum_probs=141.0
Q ss_pred ceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhc-------CChHHHHHHHHHHcCCCCCCCc
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSA-------GDEDRMLVLFFNRIGWPTSVPT 156 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~g~~~~~~~ 156 (371)
+++||||+||||+|+....+..+|+++++++|.+ ++.+.+...++... +........+...+|.+..
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~---~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 75 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQ---ITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPT--- 75 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCC---ccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCC---
Confidence 6899999999999986532578999999999975 55554443332100 0001112223344554322
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccc-hheee
Q 017455 157 NEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS-KIKIV 235 (371)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f-~~~i~ 235 (371)
.+.+..+...+.+.+.+.+ .....++||+.++|+.|+++|++++|+||+ ....++.+++++|+..+| +. |+
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~---~~~~~~~~l~~~gl~~~f~d~-ii 147 (253)
T TIGR01422 76 ---EADIEAIYEAFEPLQLAKL-AEYSSPIPGVIEVIAYLRARGIKIGSTTGY---TREMMDVVAPEAALQGYRPDY-NV 147 (253)
T ss_pred ---HHHHHHHHHHHHHHHHHHH-HhcCccCCCHHHHHHHHHHCCCeEEEECCC---cHHHHHHHHHHHHhcCCCCce-EE
Confidence 1223344455555544444 345789999999999999999999999994 478889999999999886 55 34
Q ss_pred cchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCC
Q 017455 236 GNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEK 315 (371)
Q Consensus 236 ~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv 315 (371)
+++++. ..||+|++ |..+++++|+
T Consensus 148 ~~~~~~------------------------------------------~~KP~p~~--------------~~~a~~~l~~ 171 (253)
T TIGR01422 148 TTDDVP------------------------------------------AGRPAPWM--------------ALKNAIELGV 171 (253)
T ss_pred ccccCC------------------------------------------CCCCCHHH--------------HHHHHHHcCC
Confidence 443332 22788888 9999999999
Q ss_pred C-CCcEEEEeCCHhhHHHHHHcCCcEEEECCCCC
Q 017455 316 P-VRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCI 348 (371)
Q Consensus 316 ~-p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~ 348 (371)
. |++||||||+.+|+++|+++||.+|+|.+|+.
T Consensus 172 ~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~ 205 (253)
T TIGR01422 172 YDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSN 205 (253)
T ss_pred CCchheEEECCcHHHHHHHHHCCCeEEEEecCCc
Confidence 5 99999999999999999999999999998865
No 5
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.95 E-value=3e-27 Score=216.10 Aligned_cols=209 Identities=21% Similarity=0.230 Sum_probs=155.4
Q ss_pred EEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHHHHHH
Q 017455 87 VLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAFVKNV 166 (371)
Q Consensus 87 viFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 166 (371)
||||+||||+|+... +..+|+.+++++|.+ .++.+.+...++. ....+...++...+...+ .+.++.+
T Consensus 1 viFD~DGTL~Ds~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~------~~~~~~~ 68 (213)
T TIGR01449 1 VLFDLDGTLVDSAPD-IAAAVNMALAALGLP--PATLARVIGFIGN---GVPVLMERVLAWAGQEPD------AQRVAEL 68 (213)
T ss_pred CeecCCCccccCHHH-HHHHHHHHHHHCCCC--CCCHHHHHHHhcc---cHHHHHHHHhhccccccC------hHHHHHH
Confidence 699999999999886 889999999999986 3666655554422 223343444444443322 1223444
Q ss_pred HHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhc
Q 017455 167 LQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYG 246 (371)
Q Consensus 167 ~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~ 246 (371)
.+.+...|.+.. .+..+++||+.++|+.|+++|++++|+||+ ....+..+++++|+.++|+.+ ++++++.
T Consensus 69 ~~~~~~~~~~~~-~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~---~~~~~~~~l~~~~l~~~f~~~-~~~~~~~----- 138 (213)
T TIGR01449 69 RKLFDRHYEEVA-GELTSVFPGVEATLGALRAKGLRLGLVTNK---PTPLARPLLELLGLAKYFSVL-IGGDSLA----- 138 (213)
T ss_pred HHHHHHHHHHhc-cccCccCCCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCcHhhCcEE-EecCCCC-----
Confidence 555555555544 335679999999999999999999999994 478899999999999998864 3332221
Q ss_pred cccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 017455 247 QFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS 326 (371)
Q Consensus 247 ~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs 326 (371)
..||+|++ |..+++++|++|++|++|||+
T Consensus 139 -------------------------------------~~Kp~p~~--------------~~~~~~~~~~~~~~~~~igDs 167 (213)
T TIGR01449 139 -------------------------------------QRKPHPDP--------------LLLAAERLGVAPQQMVYVGDS 167 (213)
T ss_pred -------------------------------------CCCCChHH--------------HHHHHHHcCCChhHeEEeCCC
Confidence 22788888 999999999999999999999
Q ss_pred HhhHHHHHHcCCcEEEECCCCCCCccc--ccccccchHHHHhhh
Q 017455 327 QSGVAGAQRIGMPCVVMRSRCITTLPV--SKTQRLADMLCRILK 368 (371)
Q Consensus 327 ~~Di~aA~~aGm~~v~v~~~~~~~~~l--~~~~~~~~~l~~~l~ 368 (371)
.+|+.+|+++||++|++.+++.....+ ..++.+++++.+++.
T Consensus 168 ~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~ 211 (213)
T TIGR01449 168 RVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPP 211 (213)
T ss_pred HHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHh
Confidence 999999999999999998876544333 346677777777665
No 6
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.95 E-value=4.5e-27 Score=218.98 Aligned_cols=211 Identities=18% Similarity=0.208 Sum_probs=154.7
Q ss_pred ceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHHH
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAFV 163 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 163 (371)
+|+||||+||||+|+... +..+|+.+++++|.+ .++.+.+....+. ....+..... + . .+.. ..
T Consensus 12 ~k~viFD~DGTL~Ds~~~-~~~a~~~~~~~~g~~--~~~~~~~~~~~g~---~~~~~~~~~~---~-~--~~~~----~~ 75 (229)
T PRK13226 12 PRAVLFDLDGTLLDSAPD-MLATVNAMLAARGRA--PITLAQLRPVVSK---GARAMLAVAF---P-E--LDAA----AR 75 (229)
T ss_pred CCEEEEcCcCccccCHHH-HHHHHHHHHHHCCCC--CCCHHHHHHHhhh---HHHHHHHHHh---c-c--CChH----HH
Confidence 589999999999999987 999999999999987 3676665554432 1222221111 1 1 1111 12
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhh
Q 017455 164 KNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERS 243 (371)
Q Consensus 164 ~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~ 243 (371)
+++.+.+.+.|.+.+. ...+++||+.++|+.|+++|++++|+||+. ...+..+++++|+.++|+.+ ++++++
T Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~---~~~~~~~l~~~~l~~~f~~i-~~~~~~--- 147 (229)
T PRK13226 76 DALIPEFLQRYEALIG-TQSQLFDGVEGMLQRLECAGCVWGIVTNKP---EYLARLILPQLGWEQRCAVL-IGGDTL--- 147 (229)
T ss_pred HHHHHHHHHHHHHhhh-hcCeeCCCHHHHHHHHHHCCCeEEEECCCC---HHHHHHHHHHcCchhcccEE-EecCcC---
Confidence 3444555555555442 346799999999999999999999999953 67788889999999988764 333221
Q ss_pred hhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEE
Q 017455 244 LYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLI 323 (371)
Q Consensus 244 ~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~I 323 (371)
. ..||+|++ |+.+++++|++|++|+||
T Consensus 148 -----------~----------------------------~~KP~p~~--------------~~~~~~~l~~~p~~~l~I 174 (229)
T PRK13226 148 -----------A----------------------------ERKPHPLP--------------LLVAAERIGVAPTDCVYV 174 (229)
T ss_pred -----------C----------------------------CCCCCHHH--------------HHHHHHHhCCChhhEEEe
Confidence 1 23788888 999999999999999999
Q ss_pred eCCHhhHHHHHHcCCcEEEECCCCCCCc-cc--ccccccchHHHHhhhhcC
Q 017455 324 AGSQSGVAGAQRIGMPCVVMRSRCITTL-PV--SKTQRLADMLCRILKSIT 371 (371)
Q Consensus 324 gDs~~Di~aA~~aGm~~v~v~~~~~~~~-~l--~~~~~~~~~l~~~l~~i~ 371 (371)
||+.+|+++|+++||++|++.+++.... .+ ..++.+++++-++++-+|
T Consensus 175 GDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~~~ 225 (229)
T PRK13226 175 GDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNPAT 225 (229)
T ss_pred CCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHHhc
Confidence 9999999999999999999988865322 22 346778887777766543
No 7
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.95 E-value=6.3e-27 Score=215.03 Aligned_cols=207 Identities=12% Similarity=0.118 Sum_probs=150.8
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHH
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKA 161 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (371)
|++++||||+||||+|+... +..+|..++++++.. ..+.+.+.... |.... ..+..++ ..
T Consensus 1 m~~~~viFD~DGTL~ds~~~-~~~a~~~~~~~~~~~--~~~~~~~~~~~----G~~~~---~~~~~~~------~~---- 60 (214)
T PRK13288 1 MKINTVLFDLDGTLINTNEL-IISSFLHTLKTYYPN--QYKREDVLPFI----GPSLH---DTFSKID------ES---- 60 (214)
T ss_pred CCccEEEEeCCCcCccCHHH-HHHHHHHHHHHhCCC--CCCHHHHHHHh----CcCHH---HHHHhcC------HH----
Confidence 46899999999999999987 899999999998865 24555444443 22211 1222221 11
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHH
Q 017455 162 FVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVE 241 (371)
Q Consensus 162 ~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~ 241 (371)
..+.+...+...+.+.. ....+++||+.++|+.|+++|++++|+||+ ....+...++.+|+.++|+.++ +.+++
T Consensus 61 ~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~---~~~~~~~~l~~~gl~~~f~~i~-~~~~~- 134 (214)
T PRK13288 61 KVEEMITTYREFNHEHH-DELVTEYETVYETLKTLKKQGYKLGIVTTK---MRDTVEMGLKLTGLDEFFDVVI-TLDDV- 134 (214)
T ss_pred HHHHHHHHHHHHHHHhh-hhhcccCcCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCChhceeEEE-ecCcC-
Confidence 12233334443333322 234679999999999999999999999994 4788999999999999998743 33222
Q ss_pred hhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEE
Q 017455 242 RSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCF 321 (371)
Q Consensus 242 ~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I 321 (371)
. ..||+|++ |+.+++++|++|++|+
T Consensus 135 -------------~----------------------------~~Kp~p~~--------------~~~~~~~~~~~~~~~~ 159 (214)
T PRK13288 135 -------------E----------------------------HAKPDPEP--------------VLKALELLGAKPEEAL 159 (214)
T ss_pred -------------C----------------------------CCCCCcHH--------------HHHHHHHcCCCHHHEE
Confidence 1 22788888 9999999999999999
Q ss_pred EEeCCHhhHHHHHHcCCcEEEECCCCCCCccc--ccccccchHHHHhhhh
Q 017455 322 LIAGSQSGVAGAQRIGMPCVVMRSRCITTLPV--SKTQRLADMLCRILKS 369 (371)
Q Consensus 322 ~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l--~~~~~~~~~l~~~l~~ 369 (371)
||||+.+|+++|+++||++|++.++.....++ ..++.+++++.++++-
T Consensus 160 ~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~ 209 (214)
T PRK13288 160 MVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAI 209 (214)
T ss_pred EECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHH
Confidence 99999999999999999999998886544333 2456677777666543
No 8
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.95 E-value=7e-27 Score=220.33 Aligned_cols=210 Identities=19% Similarity=0.211 Sum_probs=148.5
Q ss_pred CCCCCceEEEEecCCccccccccCcHHHHHHHHHHcCCC-CCCCChHHHHHHHHhhcCC-hHHHHHHHHHHcCCCCCCCc
Q 017455 79 QNPPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLD-CANWTAPIYTDLLRKSAGD-EDRMLVLFFNRIGWPTSVPT 156 (371)
Q Consensus 79 ~~~~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~-~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~g~~~~~~~ 156 (371)
+...++++||||+||||+|+... +..+|+++++++|.. ...++.+.+... ..|. ...+...++ .. ..
T Consensus 17 ~~~~~~k~viFDlDGTLiDs~~~-~~~a~~~~~~~~g~~~g~~~~~~~~~~~---~~G~~~~~~~~~~~---~~--~~-- 85 (248)
T PLN02770 17 SGLAPLEAVLFDVDGTLCDSDPL-HYYAFREMLQEINFNGGVPITEEFFVEN---IAGKHNEDIALGLF---PD--DL-- 85 (248)
T ss_pred cccCccCEEEEcCCCccCcCHHH-HHHHHHHHHHHhccccCCCCCHHHHHHH---cCCCCHHHHHHHHc---Cc--ch--
Confidence 44556899999999999999987 999999999999753 112444433222 1232 222222221 11 10
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeec
Q 017455 157 NEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVG 236 (371)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~ 236 (371)
+. ...+...+...|.+.. .....++||+.++|+.|+++|++++|+||+ ....+...++++|+.++|+.++.+
T Consensus 86 ---~~-~~~~~~~~~~~y~~~~-~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~---~~~~~~~~l~~~gl~~~Fd~iv~~ 157 (248)
T PLN02770 86 ---ER-GLKFTDDKEALFRKLA-SEQLKPLNGLYKLKKWIEDRGLKRAAVTNA---PRENAELMISLLGLSDFFQAVIIG 157 (248)
T ss_pred ---hh-HHHHHHHHHHHHHHHH-HhcCCcCccHHHHHHHHHHcCCeEEEEeCC---CHHHHHHHHHHcCChhhCcEEEec
Confidence 00 1123334445555544 335779999999999999999999999995 478899999999999999875333
Q ss_pred chhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCC
Q 017455 237 NEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKP 316 (371)
Q Consensus 237 ~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~ 316 (371)
. ++ . ..||+|++ |+.+++++|++
T Consensus 158 ~-~~--------------~----------------------------~~KP~p~~--------------~~~a~~~~~~~ 180 (248)
T PLN02770 158 S-EC--------------E----------------------------HAKPHPDP--------------YLKALEVLKVS 180 (248)
T ss_pred C-cC--------------C----------------------------CCCCChHH--------------HHHHHHHhCCC
Confidence 2 22 1 12788888 99999999999
Q ss_pred CCcEEEEeCCHhhHHHHHHcCCcEEEECCCCCCCccc--ccccccchHHHH
Q 017455 317 VRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPV--SKTQRLADMLCR 365 (371)
Q Consensus 317 p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l--~~~~~~~~~l~~ 365 (371)
|++|+||||+.+|+++|+++||++|++.++... ..+ ..++.+++++.+
T Consensus 181 ~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~-~~l~~~~a~~vi~~~~e 230 (248)
T PLN02770 181 KDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPE-SLLMEAKPTFLIKDYED 230 (248)
T ss_pred hhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCH-HHHhhcCCCEEeccchh
Confidence 999999999999999999999999999887532 222 245556555544
No 9
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.95 E-value=1.4e-26 Score=219.98 Aligned_cols=209 Identities=20% Similarity=0.259 Sum_probs=148.6
Q ss_pred CCCceEEEEecCCcccccc-ccCcHHHHHHHHHHcCCCCCCCChH-HHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcch
Q 017455 81 PPRDLAVLLEVDGVLVDAY-RFGNRQAFNVAFQKLGLDCANWTAP-IYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNE 158 (371)
Q Consensus 81 ~~~~kaviFD~DGTL~d~~-~~~~~~a~~~~~~~~g~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~ 158 (371)
...+|+|||||||||+|+. .. +..+|+++++++|++ ++.+ ....+.+ .....+...+ +++...
T Consensus 21 ~~~~k~vIFDlDGTLvDS~~~~-~~~a~~~~~~~~G~~---~~~~e~~~~~~G---~~~~~~~~~l---~~~~~~----- 85 (260)
T PLN03243 21 GCGWLGVVLEWEGVIVEDDSEL-ERKAWRALAEEEGKR---PPPAFLLKRAEG---MKNEQAISEV---LCWSRD----- 85 (260)
T ss_pred cCCceEEEEeCCCceeCCchHH-HHHHHHHHHHHcCCC---CCHHHHHHHhcC---CCHHHHHHHH---hccCCC-----
Confidence 4568999999999999996 44 778999999999987 3333 2223322 1222222222 222211
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecch
Q 017455 159 KKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNE 238 (371)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~ 238 (371)
...+..+...+...+. .......+++||+.++|+.|+++|++++|+||+. ...+..+++++|+.++|+.++.+ +
T Consensus 86 -~~~~~~l~~~~~~~~~-~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~---~~~~~~~l~~~gl~~~Fd~ii~~-~ 159 (260)
T PLN03243 86 -FLQMKRLAIRKEDLYE-YMQGGLYRLRPGSREFVQALKKHEIPIAVASTRP---RRYLERAIEAVGMEGFFSVVLAA-E 159 (260)
T ss_pred -HHHHHHHHHHHHHHHH-HHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcC---HHHHHHHHHHcCCHhhCcEEEec-c
Confidence 1123344444444443 2223457799999999999999999999999954 78899999999999999875433 2
Q ss_pred hHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCC
Q 017455 239 EVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVR 318 (371)
Q Consensus 239 ~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~ 318 (371)
++ . ..||+|++ |+.+++++|++|+
T Consensus 160 d~--------------~----------------------------~~KP~Pe~--------------~~~a~~~l~~~p~ 183 (260)
T PLN03243 160 DV--------------Y----------------------------RGKPDPEM--------------FMYAAERLGFIPE 183 (260)
T ss_pred cC--------------C----------------------------CCCCCHHH--------------HHHHHHHhCCChH
Confidence 22 1 22888888 9999999999999
Q ss_pred cEEEEeCCHhhHHHHHHcCCcEEEECCCCCCCcccccccccchHHHHhh
Q 017455 319 NCFLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLCRIL 367 (371)
Q Consensus 319 e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~~~l 367 (371)
+|+||||+..|+++|+++||++|++. +......+..++.+++++.++.
T Consensus 184 ~~l~IgDs~~Di~aA~~aG~~~i~v~-g~~~~~~l~~ad~vi~~~~el~ 231 (260)
T PLN03243 184 RCIVFGNSNSSVEAAHDGCMKCVAVA-GKHPVYELSAGDLVVRRLDDLS 231 (260)
T ss_pred HeEEEcCCHHHHHHHHHcCCEEEEEe-cCCchhhhccCCEEeCCHHHHH
Confidence 99999999999999999999999997 4333344555666666665543
No 10
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.95 E-value=1.6e-26 Score=219.83 Aligned_cols=194 Identities=19% Similarity=0.133 Sum_probs=138.8
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHH----------HHHHHHHHcCCC
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDR----------MLVLFFNRIGWP 151 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~----------~~~~~~~~~g~~ 151 (371)
+++|+||||+||||+|+....+..+|+++++++|.+ ++.+.+...++ ..... ....+...+|.+
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~---~~~~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~~~~g~~ 75 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVE---ITLEEARGPMG---LGKWDHIRALLKMPRVAARWQAVFGRL 75 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCC---CCHHHHHHhcC---CCHHHHHHHHHhcHHHHHHHHHHhCCC
Confidence 458999999999999986532468999999999986 44444333321 11111 111223344543
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccc-
Q 017455 152 TSVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS- 230 (371)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f- 230 (371)
.+ .+.+..+...+.+.+.+.+ .....++||+.++|+.|+++|++++|+||+ ....+..+++.+++..+|
T Consensus 76 ~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~pg~~elL~~L~~~g~~l~I~T~~---~~~~~~~~l~~~~l~~~~~ 145 (267)
T PRK13478 76 PT------EADVDALYAAFEPLQIAKL-ADYATPIPGVLEVIAALRARGIKIGSTTGY---TREMMDVVVPLAAAQGYRP 145 (267)
T ss_pred CC------HHHHHHHHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHCCCEEEEEcCC---cHHHHHHHHHHHhhcCCCc
Confidence 22 1223344444555554444 335679999999999999999999999994 477888889999988775
Q ss_pred hheeecchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHH
Q 017455 231 KIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGA 310 (371)
Q Consensus 231 ~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~ 310 (371)
+. |++++++. ..||+|++ |..++
T Consensus 146 d~-i~~~~~~~------------------------------------------~~KP~p~~--------------~~~a~ 168 (267)
T PRK13478 146 DH-VVTTDDVP------------------------------------------AGRPYPWM--------------ALKNA 168 (267)
T ss_pred eE-EEcCCcCC------------------------------------------CCCCChHH--------------HHHHH
Confidence 54 33333321 12788888 99999
Q ss_pred HHcCCC-CCcEEEEeCCHhhHHHHHHcCCcEEEECCCCC
Q 017455 311 EYAEKP-VRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCI 348 (371)
Q Consensus 311 ~~lgv~-p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~ 348 (371)
+++|+. |++||||||+.+|+++|+++||++|+|.+++.
T Consensus 169 ~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~ 207 (267)
T PRK13478 169 IELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGN 207 (267)
T ss_pred HHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcc
Confidence 999996 69999999999999999999999999998865
No 11
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.94 E-value=4.5e-26 Score=211.17 Aligned_cols=214 Identities=21% Similarity=0.237 Sum_probs=155.9
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHH
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKA 161 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (371)
|.+++|+||+||||+|+... +..+++.+++.+|.+. .+.+....+.+. ....+ +....+..... ...+
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~ig~---~~~~~---~~~~~~~~~~~---~~~~ 69 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAED-ILRAFNAALAELGLPP--LDEEEIRQLIGL---GLDEL---IERLLGEADEE---AAAE 69 (220)
T ss_pred CCCCEEEEeCCCccccChHH-HHHHHHHHHHHcCCCC--CCHHHHHHHhcC---CHHHH---HHHHhccccch---hHHH
Confidence 56899999999999999996 9999999999999983 555555555432 22222 22222222110 0012
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHH
Q 017455 162 FVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVE 241 (371)
Q Consensus 162 ~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~ 241 (371)
.++.+...+.+.+.+.. ...++||+.++|..|+++|++++|+||. +...+..+++.+|+.++|+.++. .+...
T Consensus 70 ~~~~~~~~~~~~~~~~~---~~~~~~gv~e~L~~L~~~g~~l~i~T~k---~~~~~~~~l~~~gl~~~F~~i~g-~~~~~ 142 (220)
T COG0546 70 LVERLREEFLTAYAELL---ESRLFPGVKELLAALKSAGYKLGIVTNK---PERELDILLKALGLADYFDVIVG-GDDVP 142 (220)
T ss_pred HHHHHHHHHHHHHHhhc---cCccCCCHHHHHHHHHhCCCeEEEEeCC---cHHHHHHHHHHhCCccccceEEc-CCCCC
Confidence 23333333333333322 2579999999999999999999999994 48899999999999999988532 22211
Q ss_pred hhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEE
Q 017455 242 RSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCF 321 (371)
Q Consensus 242 ~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I 321 (371)
..||+|.. +..+++.+|++|+++|
T Consensus 143 ------------------------------------------~~KP~P~~--------------l~~~~~~~~~~~~~~l 166 (220)
T COG0546 143 ------------------------------------------PPKPDPEP--------------LLLLLEKLGLDPEEAL 166 (220)
T ss_pred ------------------------------------------CCCcCHHH--------------HHHHHHHhCCChhheE
Confidence 12777777 9999999999999999
Q ss_pred EEeCCHhhHHHHHHcCCcEEEECCCCCCCcc--cccccccchHHHHhhhhc
Q 017455 322 LIAGSQSGVAGAQRIGMPCVVMRSRCITTLP--VSKTQRLADMLCRILKSI 370 (371)
Q Consensus 322 ~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~--l~~~~~~~~~l~~~l~~i 370 (371)
||||+.+|+++|++||+++|+|.+|+..... ...++.+++++.+++..|
T Consensus 167 ~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l 217 (220)
T COG0546 167 MVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALL 217 (220)
T ss_pred EECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHHHHH
Confidence 9999999999999999999999999853333 345677888888877654
No 12
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.94 E-value=5.1e-26 Score=210.27 Aligned_cols=210 Identities=17% Similarity=0.214 Sum_probs=149.3
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHH
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKA 161 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (371)
+++++|+||+||||+|+... +..+|.++++++|.+. ...+.....++ .....+...+....++... +..
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~--~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~----~~~- 73 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPL-WDRAELDVMASLGVDI--SRREELPDTLG---LRIDQVVDLWYARQPWNGP----SRQ- 73 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHH-HHHHHHHHHHHCCCCC--CHHHHHHHhhC---CCHHHHHHHHHHhcCCCCC----CHH-
Confidence 35899999999999999987 8999999999999862 22233333321 2223333334444444321 111
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHH
Q 017455 162 FVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVE 241 (371)
Q Consensus 162 ~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~ 241 (371)
.......+.+.+.+ ....+++||+.++|+.|+++|++++|+||+ ....+..+++++|+.++|+.++.+ +++
T Consensus 74 ---~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~---~~~~~~~~l~~~~l~~~f~~~~~~-~~~- 144 (222)
T PRK10826 74 ---EVVQRIIARVISLI-EETRPLLPGVREALALCKAQGLKIGLASAS---PLHMLEAVLTMFDLRDYFDALASA-EKL- 144 (222)
T ss_pred ---HHHHHHHHHHHHHH-hcCCCCCCCHHHHHHHHHHCCCeEEEEeCC---cHHHHHHHHHhCcchhcccEEEEc-ccC-
Confidence 22233333333333 234679999999999999999999999994 478888999999999999875432 222
Q ss_pred hhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEE
Q 017455 242 RSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCF 321 (371)
Q Consensus 242 ~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I 321 (371)
. ..||+|++ |+.+++++|++|++|+
T Consensus 145 -------------~----------------------------~~Kp~~~~--------------~~~~~~~~~~~~~~~~ 169 (222)
T PRK10826 145 -------------P----------------------------YSKPHPEV--------------YLNCAAKLGVDPLTCV 169 (222)
T ss_pred -------------C----------------------------CCCCCHHH--------------HHHHHHHcCCCHHHeE
Confidence 1 23788888 9999999999999999
Q ss_pred EEeCCHhhHHHHHHcCCcEEEECCCCCCCc-ccccccccchHHHHh
Q 017455 322 LIAGSQSGVAGAQRIGMPCVVMRSRCITTL-PVSKTQRLADMLCRI 366 (371)
Q Consensus 322 ~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~-~l~~~~~~~~~l~~~ 366 (371)
+|||+.+|+++|+++||++|++.++....+ ....++.++.++.++
T Consensus 170 ~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl 215 (222)
T PRK10826 170 ALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTEL 215 (222)
T ss_pred EEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHH
Confidence 999999999999999999999988765432 223445555555554
No 13
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.94 E-value=3.2e-26 Score=204.62 Aligned_cols=184 Identities=23% Similarity=0.302 Sum_probs=137.9
Q ss_pred EEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHHHHH
Q 017455 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAFVKN 165 (371)
Q Consensus 86 aviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (371)
+||||+||||+|+... +..+|+++++++|++ ++.+....+.+ .........++.+.|...+ . +.+..
T Consensus 1 ~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~---~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~--~----~~~~~ 67 (185)
T TIGR01990 1 AVIFDLDGVITDTAEY-HYLAWKALADELGIP---FDEEFNESLKG---VSREDSLERILDLGGKKYS--E----EEKEE 67 (185)
T ss_pred CeEEcCCCccccChHH-HHHHHHHHHHHcCCC---CCHHHHHHhcC---CChHHHHHHHHHhcCCCCC--H----HHHHH
Confidence 5899999999999997 999999999999986 55554444332 2234455566677676433 2 12233
Q ss_pred HHHHHHHHHHHHHhc-CCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhh
Q 017455 166 VLQEKKNALDEFLAS-KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSL 244 (371)
Q Consensus 166 l~~~~~~~~~~~l~~-~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~ 244 (371)
+.+.+.+.|.+.+.. ....++||+.++|+.|+++|++++|+||+. .....++++|+.++|+.++. ++++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~-----~~~~~l~~~~l~~~f~~~~~-~~~~~--- 138 (185)
T TIGR01990 68 LAERKNDYYVELLKELTPADVLPGIKNLLDDLKKNNIKIALASASK-----NAPTVLEKLGLIDYFDAIVD-PAEIK--- 138 (185)
T ss_pred HHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCc-----cHHHHHHhcCcHhhCcEEEe-hhhcC---
Confidence 444444445444321 235789999999999999999999999942 24678999999999987543 22221
Q ss_pred hccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEe
Q 017455 245 YGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIA 324 (371)
Q Consensus 245 f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~Ig 324 (371)
..||+|++ |+.+++++|++|++|||||
T Consensus 139 ---------------------------------------~~kp~p~~--------------~~~~~~~~~~~~~~~v~vg 165 (185)
T TIGR01990 139 ---------------------------------------KGKPDPEI--------------FLAAAEGLGVSPSECIGIE 165 (185)
T ss_pred ---------------------------------------CCCCChHH--------------HHHHHHHcCCCHHHeEEEe
Confidence 23888888 9999999999999999999
Q ss_pred CCHhhHHHHHHcCCcEEEEC
Q 017455 325 GSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 325 Ds~~Di~aA~~aGm~~v~v~ 344 (371)
|+.+|+++|+++||++|+|+
T Consensus 166 D~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 166 DAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred cCHHHHHHHHHcCCEEEecC
Confidence 99999999999999999874
No 14
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.94 E-value=5.4e-26 Score=209.69 Aligned_cols=186 Identities=15% Similarity=0.234 Sum_probs=138.7
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCCh-HHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhH
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTA-PIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKK 160 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (371)
+++++|+||+||||+|+... +..+|.+++.++|.+ .+. +.+..+.+ -....++..+..+++.+..
T Consensus 2 ~~~~~viFD~DGTL~d~~~~-~~~a~~~~~~~~g~~---~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~------- 67 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEVI-CSRAYVTMFAEFGIT---LSLEEVFKRFKG---VKLYEIIDIISKEHGVTLA------- 67 (221)
T ss_pred CCCCEEEECCCCCCCCChHH-HHHHHHHHHHHcCCC---CCHHHHHHHhcC---CCHHHHHHHHHHHhCCCCC-------
Confidence 35899999999999999886 889999999999986 333 33333221 1234455666677776533
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhH
Q 017455 161 AFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEV 240 (371)
Q Consensus 161 ~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~ 240 (371)
.+.+...+.+.+.... ....+++||+.++|+.| +++++|+||+ ....+...++++|+.++|+..+++++++
T Consensus 68 --~~~~~~~~~~~~~~~~-~~~~~~~~gv~~~L~~L---~~~~~ivTn~---~~~~~~~~l~~~~l~~~F~~~v~~~~~~ 138 (221)
T PRK10563 68 --KAELEPVYRAEVARLF-DSELEPIAGANALLESI---TVPMCVVSNG---PVSKMQHSLGKTGMLHYFPDKLFSGYDI 138 (221)
T ss_pred --HHHHHHHHHHHHHHHH-HccCCcCCCHHHHHHHc---CCCEEEEeCC---cHHHHHHHHHhcChHHhCcceEeeHHhc
Confidence 1123333333333322 23577999999999998 4999999995 4678889999999999996445554333
Q ss_pred HhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcE
Q 017455 241 ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNC 320 (371)
Q Consensus 241 ~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~ 320 (371)
. ..||+|++ |+.+++++|++|++|
T Consensus 139 ~------------------------------------------~~KP~p~~--------------~~~a~~~~~~~p~~~ 162 (221)
T PRK10563 139 Q------------------------------------------RWKPDPAL--------------MFHAAEAMNVNVENC 162 (221)
T ss_pred C------------------------------------------CCCCChHH--------------HHHHHHHcCCCHHHe
Confidence 2 23888888 999999999999999
Q ss_pred EEEeCCHhhHHHHHHcCCcEEEECCC
Q 017455 321 FLIAGSQSGVAGAQRIGMPCVVMRSR 346 (371)
Q Consensus 321 I~IgDs~~Di~aA~~aGm~~v~v~~~ 346 (371)
|||||+..||++|+++||++|++..+
T Consensus 163 l~igDs~~di~aA~~aG~~~i~~~~~ 188 (221)
T PRK10563 163 ILVDDSSAGAQSGIAAGMEVFYFCAD 188 (221)
T ss_pred EEEeCcHhhHHHHHHCCCEEEEECCC
Confidence 99999999999999999999998643
No 15
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.94 E-value=5e-26 Score=225.28 Aligned_cols=208 Identities=17% Similarity=0.223 Sum_probs=151.7
Q ss_pred CceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHH
Q 017455 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAF 162 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~ 162 (371)
..++|||||||||+|+...-+..+|.++++++|.+. .+.+.+..+.+ .....++..++. +.. . ...
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~--~~~e~~~~~~G---~~~~~~l~~ll~---~~~--~----~~~ 195 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSP--PPAFILRRVEG---MKNEQAISEVLC---WSR--D----PAE 195 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCC--CHHHHHHHhcC---CCHHHHHHHHhh---ccC--C----HHH
Confidence 679999999999999886326689999999999873 33333333332 123333333322 211 1 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHh
Q 017455 163 VKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVER 242 (371)
Q Consensus 163 ~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~ 242 (371)
++.+.+.+.+.|.+.. .....++||+.++|+.|+++|++++|+||+ ....+..+++++|+.++|+.++ +.+++
T Consensus 196 ~e~l~~~~~~~y~~~~-~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~---~~~~~~~~L~~lgL~~yFd~Iv-~sddv-- 268 (381)
T PLN02575 196 LRRMATRKEEIYQALQ-GGIYRLRTGSQEFVNVLMNYKIPMALVSTR---PRKTLENAIGSIGIRGFFSVIV-AAEDV-- 268 (381)
T ss_pred HHHHHHHHHHHHHHHh-ccCCCcCcCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCCHHHceEEE-ecCcC--
Confidence 3455555666665555 345679999999999999999999999994 4889999999999999998753 33222
Q ss_pred hhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEE
Q 017455 243 SLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFL 322 (371)
Q Consensus 243 ~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~ 322 (371)
. ..||+|++ |+.+++++|++|++|||
T Consensus 269 ------------~----------------------------~~KP~Pei--------------fl~A~~~lgl~Peecl~ 294 (381)
T PLN02575 269 ------------Y----------------------------RGKPDPEM--------------FIYAAQLLNFIPERCIV 294 (381)
T ss_pred ------------C----------------------------CCCCCHHH--------------HHHHHHHcCCCcccEEE
Confidence 1 12788888 99999999999999999
Q ss_pred EeCCHhhHHHHHHcCCcEEEECCCCCCCcccccccccchHHHHh
Q 017455 323 IAGSQSGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLCRI 366 (371)
Q Consensus 323 IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~~~ 366 (371)
|||+..||++|+++||++|++.++... ..+..++.+++++.++
T Consensus 295 IGDS~~DIeAAk~AGm~~IgV~~~~~~-~~l~~Ad~iI~s~~EL 337 (381)
T PLN02575 295 FGNSNQTVEAAHDARMKCVAVASKHPI-YELGAADLVVRRLDEL 337 (381)
T ss_pred EcCCHHHHHHHHHcCCEEEEECCCCCh-hHhcCCCEEECCHHHH
Confidence 999999999999999999999876433 3344566666666654
No 16
>PRK11587 putative phosphatase; Provisional
Probab=99.94 E-value=1e-25 Score=208.02 Aligned_cols=202 Identities=16% Similarity=0.218 Sum_probs=137.8
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCCh-HHHHHHHHHHcCCCCCCCcchhH
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDE-DRMLVLFFNRIGWPTSVPTNEKK 160 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~g~~~~~~~~~~~ 160 (371)
|++|+||||+||||+|+... +..+|+++++++|++. +.+... ..|.. ......+.. . .+.+
T Consensus 1 M~~k~viFDlDGTL~Ds~~~-~~~a~~~~~~~~g~~~-----~~~~~~---~~g~~~~~~~~~~~~----~--~~~~--- 62 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPA-VERAWSNWADRHGIAP-----DEVLNF---IHGKQAITSLRHFMA----G--ASEA--- 62 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHH-HHHHHHHHHHHcCCCH-----HHHHHH---HcCCCHHHHHHHHhc----c--CCcH---
Confidence 56899999999999999987 8999999999999862 222222 22322 222222211 1 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhH
Q 017455 161 AFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEV 240 (371)
Q Consensus 161 ~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~ 240 (371)
...+.. ... ..+.... .....++||+.++|+.|+++|++++|+||+. .......++.+++. +|+. +++.+++
T Consensus 63 ~~~~~~-~~~-~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~---~~~~~~~l~~~~l~-~~~~-i~~~~~~ 134 (218)
T PRK11587 63 EIQAEF-TRL-EQIEATD-TEGITALPGAIALLNHLNKLGIPWAIVTSGS---VPVASARHKAAGLP-APEV-FVTAERV 134 (218)
T ss_pred HHHHHH-HHH-HHHHHhh-hcCceeCcCHHHHHHHHHHcCCcEEEEcCCC---chHHHHHHHhcCCC-CccE-EEEHHHh
Confidence 111111 111 1122222 2457799999999999999999999999954 45667778888884 4543 3333332
Q ss_pred HhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcE
Q 017455 241 ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNC 320 (371)
Q Consensus 241 ~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~ 320 (371)
. ..||+|++ |..+++++|++|++|
T Consensus 135 ~------------------------------------------~~KP~p~~--------------~~~~~~~~g~~p~~~ 158 (218)
T PRK11587 135 K------------------------------------------RGKPEPDA--------------YLLGAQLLGLAPQEC 158 (218)
T ss_pred c------------------------------------------CCCCCcHH--------------HHHHHHHcCCCcccE
Confidence 1 23888888 999999999999999
Q ss_pred EEEeCCHhhHHHHHHcCCcEEEECCCCCCCcccccccccchHHHHh
Q 017455 321 FLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLCRI 366 (371)
Q Consensus 321 I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~~~ 366 (371)
|||||+..|+++|+++||++|++.++... .....++.+++++.++
T Consensus 159 l~igDs~~di~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~~~el 203 (218)
T PRK11587 159 VVVEDAPAGVLSGLAAGCHVIAVNAPADT-PRLDEVDLVLHSLEQL 203 (218)
T ss_pred EEEecchhhhHHHHHCCCEEEEECCCCch-hhhccCCEEecchhhe
Confidence 99999999999999999999999876532 2334455666665543
No 17
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.94 E-value=3.2e-25 Score=204.29 Aligned_cols=216 Identities=19% Similarity=0.214 Sum_probs=156.5
Q ss_pred CCCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhH
Q 017455 81 PPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKK 160 (371)
Q Consensus 81 ~~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (371)
.+++++|+||+||||+|+... +..+|..+++++|.+ .++.+.+..+.+. ....+....+...+.. .+ .
T Consensus 3 ~~~~~~iiFD~DGTL~d~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~--~~----~ 70 (226)
T PRK13222 3 FMDIRAVAFDLDGTLVDSAPD-LAAAVNAALAALGLP--PAGEERVRTWVGN---GADVLVERALTWAGRE--PD----E 70 (226)
T ss_pred CCcCcEEEEcCCcccccCHHH-HHHHHHHHHHHCCCC--CCCHHHHHHHhCc---cHHHHHHHHHhhccCC--cc----H
Confidence 356899999999999999876 889999999999987 3555555544422 2333433444333322 22 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhH
Q 017455 161 AFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEV 240 (371)
Q Consensus 161 ~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~ 240 (371)
+.++.+...+...|.+.. .....++||+.++|+.|+++|++++|+||+ .....+.+++++|+..+|+.+ ++.+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~---~~~~~~~~l~~~~l~~~f~~~-~~~~~~ 145 (226)
T PRK13222 71 ELLEKLRELFDRHYAENV-AGGSRLYPGVKETLAALKAAGYPLAVVTNK---PTPFVAPLLEALGIADYFSVV-IGGDSL 145 (226)
T ss_pred HHHHHHHHHHHHHHHHhc-cccCccCCCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCCccCccEE-EcCCCC
Confidence 223444455555555544 234679999999999999999999999994 477888999999999888763 332221
Q ss_pred HhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcE
Q 017455 241 ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNC 320 (371)
Q Consensus 241 ~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~ 320 (371)
. ..||+|++ |+.++++++++|++|
T Consensus 146 --------------~----------------------------~~kp~~~~--------------~~~~~~~~~~~~~~~ 169 (226)
T PRK13222 146 --------------P----------------------------NKKPDPAP--------------LLLACEKLGLDPEEM 169 (226)
T ss_pred --------------C----------------------------CCCcChHH--------------HHHHHHHcCCChhhe
Confidence 1 23788887 999999999999999
Q ss_pred EEEeCCHhhHHHHHHcCCcEEEECCCCCCCccc--ccccccchHHHHhhhh
Q 017455 321 FLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPV--SKTQRLADMLCRILKS 369 (371)
Q Consensus 321 I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l--~~~~~~~~~l~~~l~~ 369 (371)
++|||+.+|+++|+++||++|++.++.....++ ..++.+++++.++...
T Consensus 170 i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~ 220 (226)
T PRK13222 170 LFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPL 220 (226)
T ss_pred EEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHHH
Confidence 999999999999999999999999876533333 3455677777665543
No 18
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.94 E-value=1.1e-25 Score=201.03 Aligned_cols=185 Identities=22% Similarity=0.302 Sum_probs=137.9
Q ss_pred ceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHHH
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAFV 163 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 163 (371)
+|+|+||+||||+|+... +..+|..+++++|.+ ++.+....+. +.........++.+.+... + ...+
T Consensus 1 ~~~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~---~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~--~----~~~~ 67 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPL-HAQAWKHLADKYGIE---FDKQYNTSLG---GLSREDILRAILKLRKPGL--S----LETI 67 (185)
T ss_pred CCeEEEcCCCcccCChHH-HHHHHHHHHHHcCCC---CCHHHHHHcC---CCCHHHHHHHHHHhcCCCC--C----HHHH
Confidence 479999999999999987 899999999999986 4432222222 1122334445555553221 2 1223
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhh
Q 017455 164 KNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERS 243 (371)
Q Consensus 164 ~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~ 243 (371)
..+.+.+.+.+.+.+......++||+.++|+.|+++|++++++||+ ..++..++.+|+.++|+.++ ++++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l~~~f~~v~-~~~~~~-- 139 (185)
T TIGR02009 68 HQLAERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGLTDYFDAIV-DADEVK-- 139 (185)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcChHHHCCEee-ehhhCC--
Confidence 4455555556655553345789999999999999999999999993 55788899999999998753 322221
Q ss_pred hhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEE
Q 017455 244 LYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLI 323 (371)
Q Consensus 244 ~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~I 323 (371)
..||+|++ |+.+++++|++|++||+|
T Consensus 140 ----------------------------------------~~kp~~~~--------------~~~~~~~~~~~~~~~v~I 165 (185)
T TIGR02009 140 ----------------------------------------EGKPHPET--------------FLLAAELLGVSPNECVVF 165 (185)
T ss_pred ----------------------------------------CCCCChHH--------------HHHHHHHcCCCHHHeEEE
Confidence 23788888 999999999999999999
Q ss_pred eCCHhhHHHHHHcCCcEEEE
Q 017455 324 AGSQSGVAGAQRIGMPCVVM 343 (371)
Q Consensus 324 gDs~~Di~aA~~aGm~~v~v 343 (371)
||+.+|+++|+++||++|+|
T Consensus 166 gD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 166 EDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred eCcHhhHHHHHHCCCeEeeC
Confidence 99999999999999999875
No 19
>PLN02940 riboflavin kinase
Probab=99.93 E-value=1.8e-25 Score=223.35 Aligned_cols=207 Identities=19% Similarity=0.262 Sum_probs=155.0
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHH
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKA 161 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (371)
..+++||||+||||+|+... +..+|+.+++++|.. |+.+......+ .....+...++.+++.+..
T Consensus 9 ~~ik~VIFDlDGTLvDt~~~-~~~a~~~~~~~~G~~---~~~~~~~~~~G---~~~~~~~~~~~~~~~~~~~-------- 73 (382)
T PLN02940 9 KLVSHVILDLDGTLLNTDGI-VSDVLKAFLVKYGKQ---WDGREAQKIVG---KTPLEAAATVVEDYGLPCS-------- 73 (382)
T ss_pred ccCCEEEECCcCcCCcCHHH-HHHHHHHHHHHcCCC---CCHHHHHHhcC---CCHHHHHHHHHHHhCCCCC--------
Confidence 34899999999999999997 999999999999986 66655444432 2334455556677776532
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHH-HcCccccchheeecchhH
Q 017455 162 FVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVE-KLGSERISKIKIVGNEEV 240 (371)
Q Consensus 162 ~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~-~lgl~~~f~~~i~~~~~~ 240 (371)
.+++...+.+.+.+.. ....++||+.++|+.|+++|++++|+||+. ...+...++ .+|+.++|+.++ +++++
T Consensus 74 -~~~~~~~~~~~~~~~~--~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~---~~~~~~~l~~~~gl~~~Fd~ii-~~d~v 146 (382)
T PLN02940 74 -TDEFNSEITPLLSEQW--CNIKALPGANRLIKHLKSHGVPMALASNSP---RANIEAKISCHQGWKESFSVIV-GGDEV 146 (382)
T ss_pred -HHHHHHHHHHHHHHHH--ccCCCCcCHHHHHHHHHHCCCcEEEEeCCc---HHHHHHHHHhccChHhhCCEEE-ehhhc
Confidence 1233334444444332 246799999999999999999999999954 667777776 789999998753 33332
Q ss_pred HhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcE
Q 017455 241 ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNC 320 (371)
Q Consensus 241 ~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~ 320 (371)
. ..||+|++ |+.+++++|++|++|
T Consensus 147 ~------------------------------------------~~KP~p~~--------------~~~a~~~lgv~p~~~ 170 (382)
T PLN02940 147 E------------------------------------------KGKPSPDI--------------FLEAAKRLNVEPSNC 170 (382)
T ss_pred C------------------------------------------CCCCCHHH--------------HHHHHHHcCCChhHE
Confidence 1 23888888 999999999999999
Q ss_pred EEEeCCHhhHHHHHHcCCcEEEECCCCCCCcccccccccchHHHHh
Q 017455 321 FLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLCRI 366 (371)
Q Consensus 321 I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~~~ 366 (371)
|+|||+.+|+++|+++||++|++.++.........++.+++++.+.
T Consensus 171 l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el 216 (382)
T PLN02940 171 LVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDL 216 (382)
T ss_pred EEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHc
Confidence 9999999999999999999999998755443445556666666553
No 20
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.93 E-value=3.8e-25 Score=203.51 Aligned_cols=208 Identities=16% Similarity=0.134 Sum_probs=136.4
Q ss_pred ceEEEEecCCccccccccCcHHHHHHH---HHHcCCCCCCCChHHHHHHHH----hhcCChHHHHHHHHHHcCCCCCCCc
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVA---FQKLGLDCANWTAPIYTDLLR----KSAGDEDRMLVLFFNRIGWPTSVPT 156 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~---~~~~g~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~g~~~~~~~ 156 (371)
+++|+||+||||+|+... +..+|..+ +..+|++ ++.+.+...+. ............+..+++....
T Consensus 2 ~~~viFDlDGTL~ds~~~-~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 74 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGL-AEKARRNAIEVLIEAGLN---VDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYN--- 74 (221)
T ss_pred ceEEEEeCCCCCcCCCCc-cCHHHHHHHHHHHHCCCc---CCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcC---
Confidence 789999999999999986 77777655 4566765 34333332221 1111000001111122211100
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeec
Q 017455 157 NEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVG 236 (371)
Q Consensus 157 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~ 236 (371)
.+.+ ......+.... ....+++||+.++|+.|+++|++++|+||+ ....+...++++|+..+|+.++.+
T Consensus 75 ------~~~~-~~~~~~~~~~~-~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~---~~~~~~~~l~~~~l~~~f~~i~~~ 143 (221)
T TIGR02253 75 ------PKLV-AAFVYAYHKLK-FAYLRVYPGVRDTLMELRESGYRLGIITDG---LPVKQWEKLERLGVRDFFDAVITS 143 (221)
T ss_pred ------HHHH-HHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHCCCEEEEEeCC---chHHHHHHHHhCChHHhccEEEEe
Confidence 0011 11111222211 224679999999999999999999999994 366788889999999999875433
Q ss_pred chhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCC
Q 017455 237 NEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKP 316 (371)
Q Consensus 237 ~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~ 316 (371)
. ++. ..||+|++ |+.+++++|++
T Consensus 144 ~-~~~------------------------------------------~~KP~~~~--------------~~~~~~~~~~~ 166 (221)
T TIGR02253 144 E-EEG------------------------------------------VEKPHPKI--------------FYAALKRLGVK 166 (221)
T ss_pred c-cCC------------------------------------------CCCCCHHH--------------HHHHHHHcCCC
Confidence 2 221 23788888 99999999999
Q ss_pred CCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCCCcc---cccccccchHHHHh
Q 017455 317 VRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLP---VSKTQRLADMLCRI 366 (371)
Q Consensus 317 p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~~~~---l~~~~~~~~~l~~~ 366 (371)
|++||||||+. +|+.+|+++||++|++.++...... ...++.+++++.++
T Consensus 167 ~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 167 PEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred hhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 99999999998 8999999999999999887653321 22344556665554
No 21
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.93 E-value=1.7e-25 Score=213.95 Aligned_cols=207 Identities=16% Similarity=0.203 Sum_probs=152.2
Q ss_pred CCCCCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcch
Q 017455 79 QNPPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNE 158 (371)
Q Consensus 79 ~~~~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~ 158 (371)
..+..+++|||||||||+|++.. +..+|+++++++|.+ .++.+.+..+.+. ... .++.++++. ..+
T Consensus 57 ~~~~~~k~vIFDlDGTLiDS~~~-~~~a~~~~~~~~G~~--~~~~~~~~~~~g~---~~~----~i~~~~~~~----~~~ 122 (273)
T PRK13225 57 SYPQTLQAIIFDFDGTLVDSLPT-VVAIANAHAPDFGYD--PIDERDYAQLRQW---SSR----TIVRRAGLS----PWQ 122 (273)
T ss_pred hhhhhcCEEEECCcCccccCHHH-HHHHHHHHHHHCCCC--CCCHHHHHHHhCc---cHH----HHHHHcCCC----HHH
Confidence 34456899999999999999986 889999999999987 3666666655432 122 234444432 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecch
Q 017455 159 KKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNE 238 (371)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~ 238 (371)
.+.+.+.+.+.+.+.. ...+++||+.++|+.|+++|++++|+||+ ....+..+++.+|+.++|+.++ +++
T Consensus 123 ----~~~~~~~~~~~~~~~~--~~~~l~pg~~e~L~~L~~~gi~laIvSn~---~~~~~~~~L~~~gl~~~F~~vi-~~~ 192 (273)
T PRK13225 123 ----QARLLQRVQRQLGDCL--PALQLFPGVADLLAQLRSRSLCLGILSSN---SRQNIEAFLQRQGLRSLFSVVQ-AGT 192 (273)
T ss_pred ----HHHHHHHHHHHHHhhc--ccCCcCCCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCChhheEEEE-ecC
Confidence 2233444444444432 35679999999999999999999999995 4788999999999999998643 221
Q ss_pred hHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCC
Q 017455 239 EVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVR 318 (371)
Q Consensus 239 ~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~ 318 (371)
++ +|.|+. |+.+++++|++|+
T Consensus 193 ~~---------------------------------------------~~k~~~--------------~~~~l~~~~~~p~ 213 (273)
T PRK13225 193 PI---------------------------------------------LSKRRA--------------LSQLVAREGWQPA 213 (273)
T ss_pred CC---------------------------------------------CCCHHH--------------HHHHHHHhCcChh
Confidence 11 111222 8999999999999
Q ss_pred cEEEEeCCHhhHHHHHHcCCcEEEECCCCCCCcccc--cccccchHHHHhhh
Q 017455 319 NCFLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPVS--KTQRLADMLCRILK 368 (371)
Q Consensus 319 e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l~--~~~~~~~~l~~~l~ 368 (371)
+|+||||+.+|+++|+++||.+|++.++......+. .++.+++++.++++
T Consensus 214 ~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~ 265 (273)
T PRK13225 214 AVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQ 265 (273)
T ss_pred HEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHH
Confidence 999999999999999999999999998876554443 46677776666654
No 22
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.93 E-value=4.2e-25 Score=198.27 Aligned_cols=183 Identities=20% Similarity=0.265 Sum_probs=135.4
Q ss_pred CceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHH
Q 017455 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAF 162 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~ 162 (371)
++++||||+||||+|+... +..+|.+++.++|.+ ++.+...... +.....+...++.+.+....
T Consensus 4 ~~~~viFD~DGTLiDs~~~-~~~a~~~~~~~~g~~---~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~--------- 67 (188)
T PRK10725 4 RYAGLIFDMDGTILDTEPT-HRKAWREVLGRYGLQ---FDEQAMVALN---GSPTWRIAQAIIELNQADLD--------- 67 (188)
T ss_pred cceEEEEcCCCcCccCHHH-HHHHHHHHHHHcCCC---CCHHHHHHhc---CCCHHHHHHHHHHHhCCCCC---------
Confidence 4789999999999999987 999999999999986 4444333222 12233344455555443322
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHh
Q 017455 163 VKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVER 242 (371)
Q Consensus 163 ~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~ 242 (371)
.+.+...+...+.+.+ ....+++|| .++|..|++. ++++|+||+ ....+...++++|+.++|+.+ ++++++.
T Consensus 68 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~---~~~~~~~~l~~~~l~~~fd~i-~~~~~~~- 139 (188)
T PRK10725 68 PHALAREKTEAVKSML-LDSVEPLPL-IEVVKAWHGR-RPMAVGTGS---ESAIAEALLAHLGLRRYFDAV-VAADDVQ- 139 (188)
T ss_pred HHHHHHHHHHHHHHHH-hccCCCccH-HHHHHHHHhC-CCEEEEcCC---chHHHHHHHHhCCcHhHceEE-Eehhhcc-
Confidence 1123333334444443 334668887 5899999875 899999994 478899999999999999874 4433331
Q ss_pred hhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEE
Q 017455 243 SLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFL 322 (371)
Q Consensus 243 ~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~ 322 (371)
..||+|++ |+.+++++|++|++||+
T Consensus 140 -----------------------------------------~~KP~p~~--------------~~~~~~~~~~~~~~~l~ 164 (188)
T PRK10725 140 -----------------------------------------HHKPAPDT--------------FLRCAQLMGVQPTQCVV 164 (188)
T ss_pred -----------------------------------------CCCCChHH--------------HHHHHHHcCCCHHHeEE
Confidence 23888888 99999999999999999
Q ss_pred EeCCHhhHHHHHHcCCcEEEEC
Q 017455 323 IAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 323 IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
|||+.+|+++|+++||++|++.
T Consensus 165 igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 165 FEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred EeccHhhHHHHHHCCCEEEeec
Confidence 9999999999999999999986
No 23
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.93 E-value=3.9e-25 Score=201.81 Aligned_cols=198 Identities=21% Similarity=0.319 Sum_probs=144.7
Q ss_pred EEEecCCccccccccCcHHHHHHHHHH-cCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHHHHH
Q 017455 87 VLLEVDGVLVDAYRFGNRQAFNVAFQK-LGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAFVKN 165 (371)
Q Consensus 87 viFD~DGTL~d~~~~~~~~a~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (371)
||||+||||+|+... +..+|++++++ +|.+ .++.+.+..+.+. ... .++..+|.+.. ..+.
T Consensus 1 iiFDlDGTL~Ds~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~---~~~----~~~~~~~~~~~--------~~~~ 62 (205)
T TIGR01454 1 VVFDLDGVLVDSFAV-MREAFAIAYREVVGDG--PAPFEEYRRHLGR---YFP----DIMRIMGLPLE--------MEEP 62 (205)
T ss_pred CeecCcCccccCHHH-HHHHHHHHHHHhcCCC--CCCHHHHHHHhCc---cHH----HHHHHcCCCHH--------HHHH
Confidence 699999999999997 99999999988 4765 2555655555432 122 22334443211 0011
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhh
Q 017455 166 VLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLY 245 (371)
Q Consensus 166 l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f 245 (371)
.. ...+ .. ....+++||+.++|+.|+++|++++|+||+. ...+...++.+|+.++|+.++ +.++.
T Consensus 63 ~~---~~~~-~~--~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~---~~~~~~~l~~~~l~~~f~~i~-~~~~~----- 127 (205)
T TIGR01454 63 FV---RESY-RL--AGEVEVFPGVPELLAELRADGVGTAIATGKS---GPRARSLLEALGLLPLFDHVI-GSDEV----- 127 (205)
T ss_pred HH---HHHH-Hh--hcccccCCCHHHHHHHHHHCCCeEEEEeCCc---hHHHHHHHHHcCChhheeeEE-ecCcC-----
Confidence 11 1111 11 2357899999999999999999999999954 778889999999999988643 32221
Q ss_pred ccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeC
Q 017455 246 GQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAG 325 (371)
Q Consensus 246 ~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgD 325 (371)
. ..||+|++ |+.+++++|++|++|+||||
T Consensus 128 ---------~----------------------------~~KP~~~~--------------~~~~~~~~~~~~~~~l~igD 156 (205)
T TIGR01454 128 ---------P----------------------------RPKPAPDI--------------VREALRLLDVPPEDAVMVGD 156 (205)
T ss_pred ---------C----------------------------CCCCChHH--------------HHHHHHHcCCChhheEEEcC
Confidence 1 23788888 99999999999999999999
Q ss_pred CHhhHHHHHHcCCcEEEECCCCCCCcccc--cccccchHHHHhhh
Q 017455 326 SQSGVAGAQRIGMPCVVMRSRCITTLPVS--KTQRLADMLCRILK 368 (371)
Q Consensus 326 s~~Di~aA~~aGm~~v~v~~~~~~~~~l~--~~~~~~~~l~~~l~ 368 (371)
+.+|+.+|+++||++|++.++.....++. .++.+++++.++++
T Consensus 157 ~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~ 201 (205)
T TIGR01454 157 AVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLA 201 (205)
T ss_pred CHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHH
Confidence 99999999999999999998876655543 45667777766654
No 24
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.93 E-value=1.3e-24 Score=207.70 Aligned_cols=214 Identities=17% Similarity=0.191 Sum_probs=151.7
Q ss_pred CceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHH
Q 017455 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAF 162 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~ 162 (371)
-+|+|||||||||+|+... +..+|..+++++|.+. ++.+.+..+.+. ....+...++........++ +..
T Consensus 12 ~~k~viFDlDGTL~Ds~~~-~~~a~~~~~~~~g~~~--~~~~~~~~~~g~---~~~~~~~~~l~~~~~~~~~~----~~~ 81 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPD-LAAAVDRMLLELGRPP--AGLEAVRHWVGN---GAPVLVRRALAGSIDHDGVD----DEL 81 (272)
T ss_pred cCCEEEEcCCCccccCHHH-HHHHHHHHHHHcCCCC--CCHHHHHHHhCh---hHHHHHHHHhcccccccCCC----HHH
Confidence 3679999999999999997 9999999999999873 444444444321 12222222221110001111 122
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHh
Q 017455 163 VKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVER 242 (371)
Q Consensus 163 ~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~ 242 (371)
.+.+.+.+.+.|... .....++||+.++|+.|+++|++++|+||+ +...+...++++|+.++|+.+ ++++++
T Consensus 82 ~~~~~~~~~~~~~~~--~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~---~~~~~~~~l~~~~i~~~f~~i-~~~d~~-- 153 (272)
T PRK13223 82 AEQALALFMEAYADS--HELTVVYPGVRDTLKWLKKQGVEMALITNK---PERFVAPLLDQMKIGRYFRWI-IGGDTL-- 153 (272)
T ss_pred HHHHHHHHHHHHHhc--CcCCccCCCHHHHHHHHHHCCCeEEEEECC---cHHHHHHHHHHcCcHhhCeEE-EecCCC--
Confidence 334444444444432 124678999999999999999999999994 467888899999999888763 333222
Q ss_pred hhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEE
Q 017455 243 SLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFL 322 (371)
Q Consensus 243 ~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~ 322 (371)
. ..||+|++ |+.+++++|++|++||+
T Consensus 154 ------------~----------------------------~~Kp~p~~--------------~~~~~~~~g~~~~~~l~ 179 (272)
T PRK13223 154 ------------P----------------------------QKKPDPAA--------------LLFVMKMAGVPPSQSLF 179 (272)
T ss_pred ------------C----------------------------CCCCCcHH--------------HHHHHHHhCCChhHEEE
Confidence 1 12788888 99999999999999999
Q ss_pred EeCCHhhHHHHHHcCCcEEEECCCCCCCcccc--cccccchHHHHhhh
Q 017455 323 IAGSQSGVAGAQRIGMPCVVMRSRCITTLPVS--KTQRLADMLCRILK 368 (371)
Q Consensus 323 IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l~--~~~~~~~~l~~~l~ 368 (371)
|||+.+||++|+++||+++++.+|+....++. .++.+++++.++++
T Consensus 180 IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~ 227 (272)
T PRK13223 180 VGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALLP 227 (272)
T ss_pred ECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHHH
Confidence 99999999999999999999988876554433 46667777777653
No 25
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.93 E-value=1.8e-24 Score=198.83 Aligned_cols=207 Identities=14% Similarity=0.173 Sum_probs=143.0
Q ss_pred ceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhh--------cCC--hHHH----HHHHHHHcC
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKS--------AGD--EDRM----LVLFFNRIG 149 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~g~--~~~~----~~~~~~~~g 149 (371)
+|+|+||+||||+|+... +..+|.++++++|++ .+.+.+..+.... .|. .... +..++.+++
T Consensus 1 ~k~viFD~DGTL~d~~~~-~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAA-EALALRLLFEDQGIP---LTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYN 76 (224)
T ss_pred CCEEEEcCcCcccccchH-HHHHHHHHHHHhCCC---ccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhC
Confidence 579999999999999986 788999999999976 3333322221110 000 0000 011222222
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 150 WPTSVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
.+.. .+.....|.+.. ....+++||+.++|+.|+++ ++++|+||+ ....+..+++.+|+..+
T Consensus 77 ~~~~-------------~~~~~~~~~~~~-~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~---~~~~~~~~l~~~~l~~~ 138 (224)
T TIGR02254 77 TEAD-------------EALLNQKYLRFL-EEGHQLLPGAFELMENLQQK-FRLYIVTNG---VRETQYKRLRKSGLFPF 138 (224)
T ss_pred CCCc-------------HHHHHHHHHHHH-hccCeeCccHHHHHHHHHhc-CcEEEEeCC---chHHHHHHHHHCCcHhh
Confidence 2110 011223333333 22467999999999999999 999999995 47888899999999999
Q ss_pred chheeecchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHH
Q 017455 230 SKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAG 309 (371)
Q Consensus 230 f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a 309 (371)
|+.++.+.+.. ..||+|++ |+.+
T Consensus 139 fd~i~~~~~~~-------------------------------------------~~KP~~~~--------------~~~~ 161 (224)
T TIGR02254 139 FDDIFVSEDAG-------------------------------------------IQKPDKEI--------------FNYA 161 (224)
T ss_pred cCEEEEcCccC-------------------------------------------CCCCCHHH--------------HHHH
Confidence 98754433211 23888888 9999
Q ss_pred HHHc-CCCCCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCCCcccccccccchHHHHhhhh
Q 017455 310 AEYA-EKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLCRILKS 369 (371)
Q Consensus 310 ~~~l-gv~p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~~~l~~ 369 (371)
++++ |++|++||||||+. +|+.+|+++||++|++.++.........++.+++++.++++.
T Consensus 162 ~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~~ 223 (224)
T TIGR02254 162 LERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEELYEI 223 (224)
T ss_pred HHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHHHhh
Confidence 9999 99999999999998 799999999999999986543322223455677777776654
No 26
>PRK09449 dUMP phosphatase; Provisional
Probab=99.92 E-value=5.3e-24 Score=196.61 Aligned_cols=210 Identities=13% Similarity=0.167 Sum_probs=135.3
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhH-
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKK- 160 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~- 160 (371)
|++|+|+||+||||+|.. ...++++++..+|.+ ++.+.+..+... + . .++..+ .... ....+..
T Consensus 1 m~~k~iiFDlDGTLid~~---~~~~~~~~~~~~g~~---~~~~~~~~~~~~--~-~-~~~~~~-~~~~----~~~~~~~~ 65 (224)
T PRK09449 1 MKYDWILFDADETLFHFD---AFAGLQRMFSRYGVD---FTAEDFQDYQAV--N-K-PLWVDY-QNGA----ITALQLQH 65 (224)
T ss_pred CCccEEEEcCCCchhcch---hhHHHHHHHHHhCCC---CcHHHHHHHHHH--H-H-HHHHHH-HcCC----CCHHHHHH
Confidence 468999999999999854 357888999999986 444444433211 1 0 011111 0000 0000000
Q ss_pred HHHHHHH-------HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchhe
Q 017455 161 AFVKNVL-------QEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIK 233 (371)
Q Consensus 161 ~~~~~l~-------~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~ 233 (371)
...+.+. ....+.|.+.. ....+++||+.++|+.|+ +|++++|+||+ ........++.+|+.++|+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~---~~~~~~~~l~~~~l~~~fd~v 140 (224)
T PRK09449 66 TRFESWAEKLNVTPGELNSAFLNAM-AEICTPLPGAVELLNALR-GKVKMGIITNG---FTELQQVRLERTGLRDYFDLL 140 (224)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH-hhcCccCccHHHHHHHHH-hCCeEEEEeCC---cHHHHHHHHHhCChHHHcCEE
Confidence 0000000 11222333333 123679999999999999 58999999994 477888889999999999886
Q ss_pred eecchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHc
Q 017455 234 IVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYA 313 (371)
Q Consensus 234 i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~l 313 (371)
+.+. ++. ..||+|++ |+.+++++
T Consensus 141 ~~~~-~~~------------------------------------------~~KP~p~~--------------~~~~~~~~ 163 (224)
T PRK09449 141 VISE-QVG------------------------------------------VAKPDVAI--------------FDYALEQM 163 (224)
T ss_pred EEEC-ccC------------------------------------------CCCCCHHH--------------HHHHHHHc
Confidence 5433 221 23888888 99999999
Q ss_pred CCC-CCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCCCcccccccccchHHHHhhh
Q 017455 314 EKP-VRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLCRILK 368 (371)
Q Consensus 314 gv~-p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~~~l~ 368 (371)
|+. +++|+||||+. +|+.+|+++||++|++..+......-..++.+++++.++++
T Consensus 164 ~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~ 220 (224)
T PRK09449 164 GNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSELEQ 220 (224)
T ss_pred CCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHHHH
Confidence 985 48999999998 69999999999999997432211111235566666666554
No 27
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.92 E-value=5.9e-24 Score=193.41 Aligned_cols=183 Identities=17% Similarity=0.228 Sum_probs=126.7
Q ss_pred eEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHH-HHHH---h----------hcCCh-H----HHHHHHH
Q 017455 85 LAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYT-DLLR---K----------SAGDE-D----RMLVLFF 145 (371)
Q Consensus 85 kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~-~~~~---~----------~~g~~-~----~~~~~~~ 145 (371)
|+|+||+||||+|+... +..+++++++++|++ ++.+... .+.. . ..|.. . .+....+
T Consensus 1 k~viFDlDGTL~d~~~~-~~~a~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 76 (203)
T TIGR02252 1 KLITFDAVGTLLALKEP-VGEVYCEIARKYGVE---VSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTF 76 (203)
T ss_pred CeEEEecCCceeeeCCC-HHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999886 899999999999997 3332222 1111 0 00212 1 1222233
Q ss_pred HHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcC
Q 017455 146 NRIGWPTSVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLG 225 (371)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lg 225 (371)
...+.+.. . .+.......+..+.......++||+.++|+.|+++|++++|+||+. . .+...++.+|
T Consensus 77 ~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~---~-~~~~~l~~~~ 142 (203)
T TIGR02252 77 GRAGVPDP---E-------SFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFD---S-RLRGLLEALG 142 (203)
T ss_pred HhcCCCCc---h-------hHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCc---h-hHHHHHHHCC
Confidence 33442111 0 1222222222222212345789999999999999999999999953 3 3577889999
Q ss_pred ccccchheeecchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHH
Q 017455 226 SERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAA 305 (371)
Q Consensus 226 l~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~ 305 (371)
+.++|+.++.+. ++ +..||+|++
T Consensus 143 l~~~fd~i~~s~-~~------------------------------------------~~~KP~~~~-------------- 165 (203)
T TIGR02252 143 LLEYFDFVVTSY-EV------------------------------------------GAEKPDPKI-------------- 165 (203)
T ss_pred cHHhcceEEeec-cc------------------------------------------CCCCCCHHH--------------
Confidence 999998754433 21 123888888
Q ss_pred HHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCcEEE
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVV 342 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~~v~ 342 (371)
|+.+++++|++|++||||||+. +||.+|+++||++|+
T Consensus 166 ~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 166 FQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred HHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 9999999999999999999997 899999999999985
No 28
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.91 E-value=6.3e-24 Score=192.66 Aligned_cols=186 Identities=17% Similarity=0.235 Sum_probs=125.7
Q ss_pred ceEEEEecCCccccccccCcHHHHHHHHHHcCCCC-CCCChHHHHHHH-HhhcCCh-------HHHHHHHHHHcCCCCCC
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDC-ANWTAPIYTDLL-RKSAGDE-------DRMLVLFFNRIGWPTSV 154 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~-~~~~~~~~~~~~-~~~~g~~-------~~~~~~~~~~~g~~~~~ 154 (371)
+|+|+||+||||+|+... ..++.+++...+... ..|-........ ....|.. ......++.++|....
T Consensus 1 ik~viFD~dgTLiD~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~- 77 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSV--VERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLEDD- 77 (198)
T ss_pred CcEEEEeCCCcCccHHHH--HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCCCC-
Confidence 478999999999998863 455655554333210 001111111111 1112211 1223344555665422
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchhee
Q 017455 155 PTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKI 234 (371)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i 234 (371)
. ...+. +.+.. ...+++||+.++|+.|+++|++++|+||+ ....+...++++|+.++|+.++
T Consensus 78 -----~----~~~~~----~~~~~--~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~---~~~~~~~~l~~~gl~~~fd~i~ 139 (198)
T TIGR01428 78 -----E----SAADR----LAEAY--LRLPPHPDVPAGLRALKERGYRLAILSNG---SPAMLKSLVKHAGLDDPFDAVL 139 (198)
T ss_pred -----H----HHHHH----HHHHH--hcCCCCCCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHCCChhhhheeE
Confidence 0 11111 22222 23568999999999999999999999995 4788889999999999998754
Q ss_pred ecchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcC
Q 017455 235 VGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE 314 (371)
Q Consensus 235 ~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lg 314 (371)
. ++++. ..||+|++ |+.+++++|
T Consensus 140 ~-s~~~~------------------------------------------~~KP~~~~--------------~~~~~~~~~ 162 (198)
T TIGR01428 140 S-ADAVR------------------------------------------AYKPAPQV--------------YQLALEALG 162 (198)
T ss_pred e-hhhcC------------------------------------------CCCCCHHH--------------HHHHHHHhC
Confidence 3 33321 23888888 999999999
Q ss_pred CCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 315 KPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 315 v~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
++|++|+||||+.+|+.+|+++||++|++..+.
T Consensus 163 ~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 163 VPPDEVLFVASNPWDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred CChhhEEEEeCCHHHHHHHHHCCCcEEEecCCC
Confidence 999999999999999999999999999998643
No 29
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.91 E-value=9e-24 Score=215.92 Aligned_cols=210 Identities=10% Similarity=0.107 Sum_probs=147.5
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCC--CCCC-ChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcch
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLD--CANW-TAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNE 158 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~--~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~ 158 (371)
+.+++|||||||||+|+... +..+|++++.+++.. +..+ +.+.+...++ ......+..+..+.+..
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G---~~~~~~~~~l~~~~~~~------- 307 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKI-LELSLDDTFDHLRSLQLWDTVTPIDKYREIMG---VPLPKVWEALLPDHSLE------- 307 (459)
T ss_pred HhhhheeEccCCceecchhH-HHHHHHHHHHHHhhhcccCCCCCHHHHHHHcC---CChHHHHHHHhhhcchh-------
Confidence 34699999999999999997 999999999998521 0012 2343443332 22333333333322211
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecch
Q 017455 159 KKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNE 238 (371)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~ 238 (371)
..+.....+.+.+...+..+..+++||+.++|+.|+++|++++|+||+ ....+..+++.+|+.++|+.+ ++++
T Consensus 308 ---~~~~~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~---~~~~~~~~l~~~~l~~~f~~i-~~~d 380 (459)
T PRK06698 308 ---IREQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNG---LTEYLRAIVSYYDLDQWVTET-FSIE 380 (459)
T ss_pred ---HHHHHHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCC---chHHHHHHHHHCCcHhhccee-EecC
Confidence 112333334444444443445789999999999999999999999994 488899999999999999874 3333
Q ss_pred hHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCC
Q 017455 239 EVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVR 318 (371)
Q Consensus 239 ~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~ 318 (371)
++. .||.|++ |..++++++ |+
T Consensus 381 ~v~-------------------------------------------~~~kP~~--------------~~~al~~l~--~~ 401 (459)
T PRK06698 381 QIN-------------------------------------------SLNKSDL--------------VKSILNKYD--IK 401 (459)
T ss_pred CCC-------------------------------------------CCCCcHH--------------HHHHHHhcC--cc
Confidence 321 1455556 888898875 78
Q ss_pred cEEEEeCCHhhHHHHHHcCCcEEEECCCCCCCcccccccccchHHHHhhh
Q 017455 319 NCFLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLCRILK 368 (371)
Q Consensus 319 e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~~~l~ 368 (371)
+||+|||+.+|+.+|+++||.+|++.+++.....+..++.+++++.++++
T Consensus 402 ~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~ 451 (459)
T PRK06698 402 EAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLELKG 451 (459)
T ss_pred eEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHHHH
Confidence 99999999999999999999999999877655555667777777766554
No 30
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.91 E-value=1.1e-23 Score=195.72 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=101.9
Q ss_pred CCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchh
Q 017455 181 KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 260 (371)
Q Consensus 181 ~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~ 260 (371)
....++||+.++|+.|+++|++++|+||+ ....+...++.+|+.++|+.++.+. ++.
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~---~~~~~~~~l~~~~l~~~fd~iv~s~-~~~------------------- 146 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNA---HPHNLAVKLEHTGLDAHLDLLLSTH-TFG------------------- 146 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCc---CHHHHHHHHHHCCcHHHCCEEEEee-eCC-------------------
Confidence 34779999999999999999999999994 4778888899999999998754333 221
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCc-
Q 017455 261 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP- 339 (371)
Q Consensus 261 ~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~- 339 (371)
..||+|++ |+.+++++|++|++|+||||+..|+++|+++||+
T Consensus 147 -----------------------~~KP~p~~--------------~~~~~~~~~~~p~~~l~igDs~~di~aA~~aG~~~ 189 (224)
T PRK14988 147 -----------------------YPKEDQRL--------------WQAVAEHTGLKAERTLFIDDSEPILDAAAQFGIRY 189 (224)
T ss_pred -----------------------CCCCCHHH--------------HHHHHHHcCCChHHEEEEcCCHHHHHHHHHcCCeE
Confidence 23888888 9999999999999999999999999999999998
Q ss_pred EEEECCCCCCCcccc-cccccchHHHHhhhhc
Q 017455 340 CVVMRSRCITTLPVS-KTQRLADMLCRILKSI 370 (371)
Q Consensus 340 ~v~v~~~~~~~~~l~-~~~~~~~~l~~~l~~i 370 (371)
+++|.++.....+.. .....++++.+.+..|
T Consensus 190 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (224)
T PRK14988 190 CLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSL 221 (224)
T ss_pred EEEEeCCCCCccchhccCCCcHHHHHHHhhhh
Confidence 567877655432211 1223466666666554
No 31
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.90 E-value=2.2e-22 Score=222.95 Aligned_cols=209 Identities=19% Similarity=0.225 Sum_probs=150.6
Q ss_pred CCCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhH
Q 017455 81 PPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKK 160 (371)
Q Consensus 81 ~~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (371)
-+++++|||||||||+|+... +..+|+++++++|++ ++.+.+..+.+ .....+...+....+.+.. .. +
T Consensus 72 ~~~ikaVIFDlDGTLiDS~~~-~~~a~~~~~~~~G~~---it~e~~~~~~G---~~~~~~~~~~~~~~~l~~~-~~---~ 140 (1057)
T PLN02919 72 WGKVSAVLFDMDGVLCNSEEP-SRRAAVDVFAEMGVE---VTVEDFVPFMG---TGEANFLGGVASVKGVKGF-DP---D 140 (1057)
T ss_pred CCCCCEEEECCCCCeEeChHH-HHHHHHHHHHHcCCC---CCHHHHHHHhC---CCHHHHHHHHHHhcCCCCC-CH---H
Confidence 357899999999999999997 999999999999986 66666655443 2334444444444444311 10 1
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc-ccchheeecch
Q 017455 161 AFVKNVLQEKKNALDEFLAS-KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE-RISKIKIVGNE 238 (371)
Q Consensus 161 ~~~~~l~~~~~~~~~~~l~~-~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~-~~f~~~i~~~~ 238 (371)
...+.+.+.|.+.+.. ....++||+.++|+.|+++|++++|+||+ ....+...++.+|+. .+|+.++ +.+
T Consensus 141 ----~~~~~~~~~~~~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~---~~~~~~~~L~~~gl~~~~Fd~iv-~~~ 212 (1057)
T PLN02919 141 ----AAKKRFFEIYLEKYAKPNSGIGFPGALELITQCKNKGLKVAVASSA---DRIKVDANLAAAGLPLSMFDAIV-SAD 212 (1057)
T ss_pred ----HHHHHHHHHHHHHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCC---cHHHHHHHHHHcCCChhHCCEEE-ECc
Confidence 2222233333332211 22347999999999999999999999995 477888899999996 7787643 332
Q ss_pred hHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCC
Q 017455 239 EVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVR 318 (371)
Q Consensus 239 ~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~ 318 (371)
++. ..||+|++ |+.+++++|++|+
T Consensus 213 ~~~------------------------------------------~~KP~Pe~--------------~~~a~~~lgv~p~ 236 (1057)
T PLN02919 213 AFE------------------------------------------NLKPAPDI--------------FLAAAKILGVPTS 236 (1057)
T ss_pred ccc------------------------------------------cCCCCHHH--------------HHHHHHHcCcCcc
Confidence 221 23888888 9999999999999
Q ss_pred cEEEEeCCHhhHHHHHHcCCcEEEECCCCCCCcccc--cccccchHHHH
Q 017455 319 NCFLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPVS--KTQRLADMLCR 365 (371)
Q Consensus 319 e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l~--~~~~~~~~l~~ 365 (371)
+||||||+..|+++|+++||++|++.++... .++. .++.+++++.+
T Consensus 237 e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~-~~L~~~~a~~vi~~l~e 284 (1057)
T PLN02919 237 ECVVIEDALAGVQAARAAGMRCIAVTTTLSE-EILKDAGPSLIRKDIGN 284 (1057)
T ss_pred cEEEEcCCHHHHHHHHHcCCEEEEECCCCCH-HHHhhCCCCEEECChHH
Confidence 9999999999999999999999999987633 3332 34455665544
No 32
>PLN02811 hydrolase
Probab=99.89 E-value=1.5e-22 Score=187.18 Aligned_cols=200 Identities=18% Similarity=0.276 Sum_probs=134.4
Q ss_pred cCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHH
Q 017455 91 VDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAFVKNVLQEK 170 (371)
Q Consensus 91 ~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 170 (371)
|||||+|+... +..+|.++++++|++ ++.+.+..++ +.....++..+...++.+..... + .+....
T Consensus 1 ~DGTL~Ds~~~-~~~a~~~~~~~~g~~---~~~~~~~~~~---G~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~ 66 (220)
T PLN02811 1 MDGLLLDTEKF-YTEVQEKILARYGKT---FDWSLKAKMM---GKKAIEAARIFVEESGLSDSLSP---E----DFLVER 66 (220)
T ss_pred CCCcceecHHH-HHHHHHHHHHHcCCC---CCHHHHHHcc---CCCHHHHHHHHHHHhCCCCCCCH---H----HHHHHH
Confidence 79999999997 999999999999986 4444433333 22333455566666665532111 1 122222
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHH-HHHHHcCccccchheeecchhHHhhhhcccc
Q 017455 171 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIAR-SVVEKLGSERISKIKIVGNEEVERSLYGQFV 249 (371)
Q Consensus 171 ~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~-~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v 249 (371)
...+.... ...+++||+.++|+.|+++|++++|+||+. ..... ..++..++.++|+.++ +.++.
T Consensus 67 ~~~~~~~~--~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~---~~~~~~~~~~~~~l~~~f~~i~-~~~~~--------- 131 (220)
T PLN02811 67 EAMLQDLF--PTSDLMPGAERLVRHLHAKGIPIAIATGSH---KRHFDLKTQRHGELFSLMHHVV-TGDDP--------- 131 (220)
T ss_pred HHHHHHHH--hhCCCCccHHHHHHHHHHCCCcEEEEeCCc---hhhHHHHHcccHHHHhhCCEEE-ECChh---------
Confidence 22222222 236789999999999999999999999954 33233 3333446777777643 33210
Q ss_pred ccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcC---CCCCcEEEEeCC
Q 017455 250 LGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE---KPVRNCFLIAGS 326 (371)
Q Consensus 250 ~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lg---v~p~e~I~IgDs 326 (371)
.+. ..||+|++ |+.+++++| ++|++||||||+
T Consensus 132 ---~~~----------------------------~~KP~p~~--------------~~~a~~~~~~~~~~~~~~v~IgDs 166 (220)
T PLN02811 132 ---EVK----------------------------QGKPAPDI--------------FLAAARRFEDGPVDPGKVLVFEDA 166 (220)
T ss_pred ---hcc----------------------------CCCCCcHH--------------HHHHHHHhCCCCCCccceEEEecc
Confidence 111 23888888 999999997 999999999999
Q ss_pred HhhHHHHHHcCCcEEEECCCCCCCcccccccccchHHH
Q 017455 327 QSGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLC 364 (371)
Q Consensus 327 ~~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~ 364 (371)
.+|+++|+++||++|++.++......+..++.+++++.
T Consensus 167 ~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~ 204 (220)
T PLN02811 167 PSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLL 204 (220)
T ss_pred HhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHh
Confidence 99999999999999999876544333334444444443
No 33
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.89 E-value=3.2e-22 Score=187.44 Aligned_cols=210 Identities=14% Similarity=0.090 Sum_probs=134.3
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCC---CCCCChHHHHHHHHhhcC--C---------hHHHHHHHHHH
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLD---CANWTAPIYTDLLRKSAG--D---------EDRMLVLFFNR 147 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~---~~~~~~~~~~~~~~~~~g--~---------~~~~~~~~~~~ 147 (371)
.++|+|+||+||||+|+... +..+++++++.++.. ...|+...+..+...... . .......++.+
T Consensus 8 ~~~k~iiFDlDGTL~D~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 86 (238)
T PRK10748 8 GRISALTFDLDDTLYDNRPV-ILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLD 86 (238)
T ss_pred CCceeEEEcCcccccCChHH-HHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHH
Confidence 35799999999999999986 788888877655211 112443333333221110 0 01122334555
Q ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 148 IGWPTSVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
+|.+.. + .+.........+.... ....++||+.++|+.|+++ ++++|+||+. .. ++.+|+.
T Consensus 87 ~g~~~~----~----~~~~~~~~~~~~~~~~--~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~---~~-----~~~~gl~ 147 (238)
T PRK10748 87 AGLSAE----E----ASAGADAAMINFAKWR--SRIDVPQATHDTLKQLAKK-WPLVAITNGN---AQ-----PELFGLG 147 (238)
T ss_pred cCCCHH----H----HHHHHHHHHHHHHHHh--hcCCCCccHHHHHHHHHcC-CCEEEEECCC---ch-----HHHCCcH
Confidence 665321 0 0111112222222221 2367999999999999975 9999999954 22 4788999
Q ss_pred ccchheeecchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHH
Q 017455 228 RISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALR 307 (371)
Q Consensus 228 ~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~ 307 (371)
++|+.++.+. ++. ..||+|++ |+
T Consensus 148 ~~fd~i~~~~-~~~------------------------------------------~~KP~p~~--------------~~ 170 (238)
T PRK10748 148 DYFEFVLRAG-PHG------------------------------------------RSKPFSDM--------------YH 170 (238)
T ss_pred HhhceeEecc-cCC------------------------------------------cCCCcHHH--------------HH
Confidence 9998754332 221 23888888 99
Q ss_pred HHHHHcCCCCCcEEEEeCC-HhhHHHHHHcCCcEEEECCCCCCCc-cc---ccccccchHHHHhhh
Q 017455 308 AGAEYAEKPVRNCFLIAGS-QSGVAGAQRIGMPCVVMRSRCITTL-PV---SKTQRLADMLCRILK 368 (371)
Q Consensus 308 ~a~~~lgv~p~e~I~IgDs-~~Di~aA~~aGm~~v~v~~~~~~~~-~l---~~~~~~~~~l~~~l~ 368 (371)
.+++++|++|++||||||+ ..||.+|+++||++|++..+..... .. ..++..++++.+..+
T Consensus 171 ~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~~ 236 (238)
T PRK10748 171 LAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASLTS 236 (238)
T ss_pred HHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHHHh
Confidence 9999999999999999999 5999999999999999976543211 11 123345666655543
No 34
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.89 E-value=8e-23 Score=178.58 Aligned_cols=175 Identities=22% Similarity=0.359 Sum_probs=127.6
Q ss_pred EEEecCCccccccccCcHHHHHH-HHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHHHHH
Q 017455 87 VLLEVDGVLVDAYRFGNRQAFNV-AFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAFVKN 165 (371)
Q Consensus 87 viFD~DGTL~d~~~~~~~~a~~~-~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (371)
|+||+||||+++... +..+|.. +++.+|.+ ++.+.+.... ......+...++.+.+..
T Consensus 1 iifD~dgtL~d~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------------- 59 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPA-IFRALQRLALEEFGLE---ISAEELRELF---GKSYEEALERLLERFGID-------------- 59 (176)
T ss_dssp EEEESBTTTEEHHHH-HHHHHHHHHHHHTTHH---HHHHHHHHHT---TSHHHHHHHHHHHHHHHH--------------
T ss_pred cEEECCCCcEeCHHH-HHHHHHHHHHHHhCCC---CCHHHHHHHh---CCCHHHHHHHhhhccchh--------------
Confidence 799999999999875 7788887 47777765 3223333322 112333444444433211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhh
Q 017455 166 VLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLY 245 (371)
Q Consensus 166 l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f 245 (371)
.....+.+.+.......+++||+.++|+.|+++|++++++||. ....+...++++|+.++|+.++.+. +..
T Consensus 60 -~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~---~~~~~~~~l~~~~~~~~f~~i~~~~-~~~---- 130 (176)
T PF13419_consen 60 -PEEIQELFREYNLESKLQPYPGVRELLERLKAKGIPLVIVSNG---SRERIERVLERLGLDDYFDEIISSD-DVG---- 130 (176)
T ss_dssp -HHHHHHHHHHHHHHGGEEESTTHHHHHHHHHHTTSEEEEEESS---EHHHHHHHHHHTTHGGGCSEEEEGG-GSS----
T ss_pred -HHHHHHHhhhhhhhhccchhhhhhhhhhhcccccceeEEeecC---Ccccccccccccccccccccccccc-hhh----
Confidence 2222333333322245779999999999999999999999994 4788889999999999998755433 221
Q ss_pred ccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeC
Q 017455 246 GQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAG 325 (371)
Q Consensus 246 ~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgD 325 (371)
..||+|++ |+.+++++|++|++||||||
T Consensus 131 --------------------------------------~~Kp~~~~--------------~~~~~~~~~~~p~~~~~vgD 158 (176)
T PF13419_consen 131 --------------------------------------SRKPDPDA--------------YRRALEKLGIPPEEILFVGD 158 (176)
T ss_dssp --------------------------------------SSTTSHHH--------------HHHHHHHHTSSGGGEEEEES
T ss_pred --------------------------------------hhhhHHHH--------------HHHHHHHcCCCcceEEEEeC
Confidence 23788888 99999999999999999999
Q ss_pred CHhhHHHHHHcCCcEEEE
Q 017455 326 SQSGVAGAQRIGMPCVVM 343 (371)
Q Consensus 326 s~~Di~aA~~aGm~~v~v 343 (371)
+..|+.+|+++||++|+|
T Consensus 159 ~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 159 SPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp SHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHcCCeEEeC
Confidence 999999999999999986
No 35
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.88 E-value=7.7e-22 Score=182.24 Aligned_cols=190 Identities=22% Similarity=0.329 Sum_probs=143.5
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHH
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKA 161 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (371)
..+-+++||+||||+|++.. +..+|+..+.++|.. ++.......+ +.....+...++..+..+.+
T Consensus 8 ~~~~~~lfD~dG~lvdte~~-y~~~~~~~~~~ygk~---~~~~~~~~~m---G~~~~eaa~~~~~~~~dp~s-------- 72 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDL-YTEAWQELLDRYGKP---YPWDVKVKSM---GKRTSEAARLFVKKLPDPVS-------- 72 (222)
T ss_pred cceeeEEEecCCcEEecHHH-HHHHHHHHHHHcCCC---ChHHHHHHHc---CCCHHHHHHHHHhhcCCCCC--------
Confidence 34679999999999999998 899999999999985 4444444433 33566677777766666655
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcC-ccccchheeecchhH
Q 017455 162 FVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLG-SERISKIKIVGNEEV 240 (371)
Q Consensus 162 ~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lg-l~~~f~~~i~~~~~~ 240 (371)
.++...+..+...+++ ....+.||+.+|+..|+.+|++++++|+++ ........++++ +...|..++.+.
T Consensus 73 -~ee~~~e~~~~~~~~~--~~~~~~PGa~kLv~~L~~~gip~alat~s~---~~~~~~k~~~~~~~~~~f~~~v~~d--- 143 (222)
T KOG2914|consen 73 -REEFNKEEEEILDRLF--MNSILMPGAEKLVNHLKNNGIPVALATSST---SASFELKISRHEDIFKNFSHVVLGD--- 143 (222)
T ss_pred -HHHHHHHHHHHHHHhc--cccccCCcHHHHHHHHHhCCCCeeEEecCC---cccHHHHHHHhhHHHHhcCCCeecC---
Confidence 3455555555555555 346799999999999999999999999964 455556666554 444444333211
Q ss_pred HhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCC-Cc
Q 017455 241 ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPV-RN 319 (371)
Q Consensus 241 ~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p-~e 319 (371)
+..+..| ||+|++ |..+++++|..| +.
T Consensus 144 ----------~~~v~~g----------------------------KP~Pdi--------------~l~A~~~l~~~~~~k 171 (222)
T KOG2914|consen 144 ----------DPEVKNG----------------------------KPDPDI--------------YLKAAKRLGVPPPSK 171 (222)
T ss_pred ----------CccccCC----------------------------CCCchH--------------HHHHHHhcCCCCccc
Confidence 2333333 899999 999999999998 99
Q ss_pred EEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 320 CFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 320 ~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
|++++|+..++++|++|||++|++.+..
T Consensus 172 ~lVfeds~~Gv~aa~aagm~vi~v~~~~ 199 (222)
T KOG2914|consen 172 CLVFEDSPVGVQAAKAAGMQVVGVATPD 199 (222)
T ss_pred eEEECCCHHHHHHHHhcCCeEEEecCCC
Confidence 9999999999999999999999999843
No 36
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.88 E-value=1.5e-22 Score=185.39 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=86.0
Q ss_pred CCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchh
Q 017455 181 KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 260 (371)
Q Consensus 181 ~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~ 260 (371)
...+++||+.++|+.|+++|++++|+||+... .......+..+++.++|+.++.+++..
T Consensus 91 ~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~-~~~~~~~~~~~~l~~~fd~v~~s~~~~-------------------- 149 (211)
T TIGR02247 91 ENTKLRPSMMAAIKTLRAKGFKTACITNNFPT-DHSAEEALLPGDIMALFDAVVESCLEG-------------------- 149 (211)
T ss_pred cccccChhHHHHHHHHHHCCCeEEEEeCCCCc-cchhhhHhhhhhhHhhCCEEEEeeecC--------------------
Confidence 35779999999999999999999999995411 111222344567788888755433211
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcE
Q 017455 261 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 340 (371)
Q Consensus 261 ~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~ 340 (371)
..||+|++ |+.+++++|++|++|+||||+..|+.+|+++||++
T Consensus 150 -----------------------~~KP~p~~--------------~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~~~ 192 (211)
T TIGR02247 150 -----------------------LRKPDPRI--------------YQLMLERLGVAPEECVFLDDLGSNLKPAAALGITT 192 (211)
T ss_pred -----------------------CCCCCHHH--------------HHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCCEE
Confidence 23888888 99999999999999999999999999999999999
Q ss_pred EEECCCC
Q 017455 341 VVMRSRC 347 (371)
Q Consensus 341 v~v~~~~ 347 (371)
|++.++.
T Consensus 193 i~v~~~~ 199 (211)
T TIGR02247 193 IKVSDEE 199 (211)
T ss_pred EEECCHH
Confidence 9998643
No 37
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.87 E-value=1.7e-21 Score=176.92 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=124.2
Q ss_pred eEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCC-h----HHHHHHHHHHcCCCCCCCcchh
Q 017455 85 LAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGD-E----DRMLVLFFNRIGWPTSVPTNEK 159 (371)
Q Consensus 85 kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-~----~~~~~~~~~~~g~~~~~~~~~~ 159 (371)
++|||||||||+|+... +..+|+++++.+|.. ..+.+.+..+.+..... . ......++............+
T Consensus 1 ~~viFD~DGTLiDs~~~-~~~a~~~~~~~~g~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (197)
T TIGR01548 1 QALVLDMDGVMADVSQS-YRRAIIDTVEHFGGV--SVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPT- 76 (197)
T ss_pred CceEEecCceEEechHH-HHHHHHHHHHHHcCC--CCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCcc-
Confidence 37999999999999997 999999999999854 36667666666431110 0 011111221111000000111
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--------CCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccch
Q 017455 160 KAFVKNVLQEKKNALDEFLAS--------KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK 231 (371)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~l~~--------~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~ 231 (371)
.+.+.+.+.+.|.+.... ....+.+++.++|+.|+++|++++|+||+ ....+..+++.+|+.++|+
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~---~~~~~~~~l~~~gl~~~f~ 150 (197)
T TIGR01548 77 ---LEAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGR---PRKDAAKFLTTHGLEILFP 150 (197)
T ss_pred ---HHHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCC---CHHHHHHHHHHcCchhhCC
Confidence 123333333333321100 12346677799999999999999999994 4788999999999999998
Q ss_pred heeecchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHH
Q 017455 232 IKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAE 311 (371)
Q Consensus 232 ~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~ 311 (371)
.++ +.+++. . ||+|++ |..+++
T Consensus 151 ~~~-~~~~~~------------------------------------------~-KP~p~~--------------~~~~~~ 172 (197)
T TIGR01548 151 VQI-WMEDCP------------------------------------------P-KPNPEP--------------LILAAK 172 (197)
T ss_pred EEE-eecCCC------------------------------------------C-CcCHHH--------------HHHHHH
Confidence 643 332221 2 788877 999999
Q ss_pred HcCCCCCcEEEEeCCHhhHHHHHHc
Q 017455 312 YAEKPVRNCFLIAGSQSGVAGAQRI 336 (371)
Q Consensus 312 ~lgv~p~e~I~IgDs~~Di~aA~~a 336 (371)
++|++|++||+|||+.+|+.+|+++
T Consensus 173 ~~~~~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 173 ALGVEACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred HhCcCcccEEEEeCCHHHHHHHHhC
Confidence 9999999999999999999999875
No 38
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.87 E-value=1.6e-21 Score=173.40 Aligned_cols=100 Identities=23% Similarity=0.325 Sum_probs=84.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
.+++||+.++|+.|+++|++++|+||+. ... ..++.++|+.++|+.++.+.+ . .
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~---~~~-~~~~~~~~l~~~f~~i~~~~~-~--------------~------- 137 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSP---RDH-AVLVQELGLRDLFDVVIFSGD-V--------------G------- 137 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCc---hHH-HHHHHhcCCHHHCCEEEEcCC-C--------------C-------
Confidence 6899999999999999999999999954 444 555666999999987654332 1 1
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
..||+|++ |+.+++++|++|++|++|||+..|+.+|+++||++|+
T Consensus 138 ---------------------~~KP~~~~--------------~~~~~~~~~~~~~~~~~vgD~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 138 ---------------------RGKPDPDI--------------YLLALKKLGLKPEECLFVDDSPAGIEAAKAAGMHTVL 182 (183)
T ss_pred ---------------------CCCCCHHH--------------HHHHHHHcCCCcceEEEEcCCHHHHHHHHHcCCEEEe
Confidence 23788888 9999999999999999999999999999999999997
Q ss_pred E
Q 017455 343 M 343 (371)
Q Consensus 343 v 343 (371)
|
T Consensus 183 v 183 (183)
T TIGR01509 183 V 183 (183)
T ss_pred C
Confidence 5
No 39
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.87 E-value=1e-21 Score=176.28 Aligned_cols=177 Identities=15% Similarity=0.091 Sum_probs=117.2
Q ss_pred EEEEecCCccccccccCcHHHHHHHHH-----HcCCCCCCCChHHH-HHHHHhhcCChHHHHHHHHHHcCCCCCCCcchh
Q 017455 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQ-----KLGLDCANWTAPIY-TDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEK 159 (371)
Q Consensus 86 aviFD~DGTL~d~~~~~~~~a~~~~~~-----~~g~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 159 (371)
+||||+||||+|+... +..+|++++. .+|++. .+.+.. ..++... |.... ......+. +
T Consensus 2 ~viFDlDGTL~ds~~~-~~~~~~~~~~~~~~~~~g~~~--~~~~~l~~~~~~~~-g~~~~---~~~~~~~~----~---- 66 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAG-IFLQIDRNITEFVAARLKLSE--EEARVLRKDYYREY-GTTLA---GLMILHEI----D---- 66 (184)
T ss_pred eEEEeCCCCCCCCccc-HHHHHHHHHHHHHHHHcCcCH--HHHHHHHHHHHHHH-chHHH---HHHHhhCC----C----
Confidence 7999999999999876 7788887654 456642 111111 1111111 21111 11122211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchh
Q 017455 160 KAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEE 239 (371)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~ 239 (371)
...+.+.+.+.......+++||+.++|+.|+ .+++|+||+ ....+...++.+|+..+|+.++.+. +
T Consensus 67 -------~~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~---~~~~~~~~l~~~gl~~~fd~i~~~~-~ 132 (184)
T TIGR01993 67 -------ADEYLRYVHGRLPYEKLKPDPELRNLLLRLP---GRKIIFTNG---DRAHARRALNRLGIEDCFDGIFCFD-T 132 (184)
T ss_pred -------HHHHHHHHhccCCHHhCCCCHHHHHHHHhCC---CCEEEEeCC---CHHHHHHHHHHcCcHhhhCeEEEee-c
Confidence 0112222222111124679999999999997 589999995 4788999999999999998754332 2
Q ss_pred HHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCc
Q 017455 240 VERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRN 319 (371)
Q Consensus 240 ~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e 319 (371)
..... ...||+|++ |+.+++++|++|++
T Consensus 133 ~~~~~--------------------------------------~~~KP~p~~--------------~~~~~~~~~~~~~~ 160 (184)
T TIGR01993 133 ANPDY--------------------------------------LLPKPSPQA--------------YEKALREAGVDPER 160 (184)
T ss_pred ccCcc--------------------------------------CCCCCCHHH--------------HHHHHHHhCCCccc
Confidence 21100 012788888 99999999999999
Q ss_pred EEEEeCCHhhHHHHHHcCCcEEEE
Q 017455 320 CFLIAGSQSGVAGAQRIGMPCVVM 343 (371)
Q Consensus 320 ~I~IgDs~~Di~aA~~aGm~~v~v 343 (371)
|+||||+..|+++|+++||++|+|
T Consensus 161 ~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 161 AIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred eEEEeCCHHHHHHHHHcCCEEeeC
Confidence 999999999999999999999975
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.86 E-value=2.6e-21 Score=176.12 Aligned_cols=106 Identities=12% Similarity=0.178 Sum_probs=85.9
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHH-cCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK-LGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~-lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
+++||+.++|+.|+++|++++|+||+. .......+.. .++..+|+.++.++ ++.
T Consensus 84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~---~~~~~~~~~~~~~l~~~fd~v~~s~-~~~--------------------- 138 (199)
T PRK09456 84 ALRPEVIAIMHKLREQGHRVVVLSNTN---RLHTTFWPEEYPEVRAAADHIYLSQ-DLG--------------------- 138 (199)
T ss_pred ccCHHHHHHHHHHHhCCCcEEEEcCCc---hhhHHHHHhhchhHHHhcCEEEEec-ccC---------------------
Confidence 489999999999999999999999954 4444444443 46777887754433 221
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
..||+|++ |+.+++++|++|++|+||||+..|+.+|+++||++|+
T Consensus 139 ---------------------~~KP~p~~--------------~~~~~~~~~~~p~~~l~vgD~~~di~aA~~aG~~~i~ 183 (199)
T PRK09456 139 ---------------------MRKPEARI--------------YQHVLQAEGFSAADAVFFDDNADNIEAANALGITSIL 183 (199)
T ss_pred ---------------------CCCCCHHH--------------HHHHHHHcCCChhHeEEeCCCHHHHHHHHHcCCEEEE
Confidence 23888888 9999999999999999999999999999999999999
Q ss_pred ECCCCCC
Q 017455 343 MRSRCIT 349 (371)
Q Consensus 343 v~~~~~~ 349 (371)
+.++...
T Consensus 184 ~~~~~~~ 190 (199)
T PRK09456 184 VTDKQTI 190 (199)
T ss_pred ecCCccH
Confidence 9876543
No 41
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.85 E-value=1.8e-20 Score=173.99 Aligned_cols=203 Identities=14% Similarity=0.166 Sum_probs=142.8
Q ss_pred CCCCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHH----H----------HhhcC--ChHHHHH-
Q 017455 80 NPPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDL----L----------RKSAG--DEDRMLV- 142 (371)
Q Consensus 80 ~~~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~----~----------~~~~g--~~~~~~~- 142 (371)
..+++|+|+||++|||+..... ....|.++.+.+|+.+ +....... + +...| ....++.
T Consensus 3 ~~~~iravtfD~~~tLl~~~~~-~~~~y~~i~~~~gl~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~ 78 (237)
T KOG3085|consen 3 ELMRIRAVTFDAGGTLLATLPP-VMEVYCEIAEAYGLEY---DDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPK 78 (237)
T ss_pred cccceEEEEEeCCCceeecCCc-cHHHHHHHHHHhCCCC---CHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHH
Confidence 4578999999999999986654 6789999999999984 11221111 1 11112 2333433
Q ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHH-HHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHH
Q 017455 143 LFFNRIGWPTSVPTNEKKAFVKNVLQEK-KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVV 221 (371)
Q Consensus 143 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l 221 (371)
.+...++.... +. .+.....+ ...|..+. ....+..+++.++++.||++|..++++||. +...+.++
T Consensus 79 lv~~~f~~~~~--~~-----~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~lq~lR~~g~~l~iisN~----d~r~~~~l 146 (237)
T KOG3085|consen 79 LVESTFGKAGI--DY-----EEELLENFSFRLFSTFA-PSAWKYLDGMQELLQKLRKKGTILGIISNF----DDRLRLLL 146 (237)
T ss_pred HHHHHhccccc--hh-----HHHHHhhhhhheecccc-ccCceeccHHHHHHHHHHhCCeEEEEecCC----cHHHHHHh
Confidence 23333332211 00 01111111 12222211 124567889999999999999999999995 45667899
Q ss_pred HHcCccccchheeecchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHH
Q 017455 222 EKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDK 301 (371)
Q Consensus 222 ~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~ 301 (371)
..+|+..+||+++.|++.+.. ||+|.|
T Consensus 147 ~~~~l~~~fD~vv~S~e~g~~-------------------------------------------KPDp~I---------- 173 (237)
T KOG3085|consen 147 LPLGLSAYFDFVVESCEVGLE-------------------------------------------KPDPRI---------- 173 (237)
T ss_pred hccCHHHhhhhhhhhhhhccC-------------------------------------------CCChHH----------
Confidence 999999999999988866543 999999
Q ss_pred HHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCCCccccc
Q 017455 302 IVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSK 355 (371)
Q Consensus 302 ~~~~~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~~~~l~~ 355 (371)
|+.+++++|+.|++|+||||.. +|+++|+++||++++|.+..+....++.
T Consensus 174 ----f~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~~~~~~~ 224 (237)
T KOG3085|consen 174 ----FQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSITALKELEY 224 (237)
T ss_pred ----HHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEccccchhhhhhh
Confidence 9999999999999999999997 5899999999999999877666555543
No 42
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.85 E-value=1.4e-20 Score=173.46 Aligned_cols=126 Identities=15% Similarity=0.147 Sum_probs=100.5
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhH
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
..+++|++.++|+.++++ ++++|+||+ ........+.++|+.++|+.++++++.+
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg---~~~~~~~~l~~~gl~~~Fd~v~~s~~~g--------------------- 151 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNG---ARPHQERKLRQLGLLDYFDAVFISEDVG--------------------- 151 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCC---ChHHHHHHHHHcCChhhhheEEEecccc---------------------
Confidence 367999999999999999 999999994 4788999999999999999976655332
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHh-hHHHHHHcCCcE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQS-GVAGAQRIGMPC 340 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~-Di~aA~~aGm~~ 340 (371)
..||+|++ |+.+++++|++|++|+||||+.. ||.+|+++||++
T Consensus 152 ----------------------~~KP~~~~--------------f~~~~~~~g~~p~~~l~VgD~~~~di~gA~~~G~~~ 195 (229)
T COG1011 152 ----------------------VAKPDPEI--------------FEYALEKLGVPPEEALFVGDSLENDILGARALGMKT 195 (229)
T ss_pred ----------------------cCCCCcHH--------------HHHHHHHcCCCcceEEEECCChhhhhHHHHhcCcEE
Confidence 33888888 99999999999999999999975 679999999999
Q ss_pred EEECCCCCCC-cccccccccchHHHHhhh
Q 017455 341 VVMRSRCITT-LPVSKTQRLADMLCRILK 368 (371)
Q Consensus 341 v~v~~~~~~~-~~l~~~~~~~~~l~~~l~ 368 (371)
|++..+.... ......+..+.++-+.++
T Consensus 196 vwi~~~~~~~~~~~~~~~~~i~~l~~l~~ 224 (229)
T COG1011 196 VWINRGGKPLPDALEAPDYEISSLAELLD 224 (229)
T ss_pred EEECCCCCCCCCCccCCceEEcCHHHHHH
Confidence 9998665422 111333445444444443
No 43
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.84 E-value=2.5e-20 Score=168.99 Aligned_cols=192 Identities=13% Similarity=0.131 Sum_probs=120.3
Q ss_pred ceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHHH
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAFV 163 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 163 (371)
+|+||||+||||+|+. .++..+++++|++ . +.+....+ +..... +...++. + ....
T Consensus 2 ~k~viFDlDGTLiD~~-----~~~~~~~~~~g~~---~--~~~~~~~g---~~~~~~---~~~~~~~--~------~~~~ 57 (197)
T PHA02597 2 KPTILTDVDGVLLSWQ-----SGLPYFAQKYNIP---T--DHILKMIQ---DERFRD---PGELFGC--D------QELA 57 (197)
T ss_pred CcEEEEecCCceEchh-----hccHHHHHhcCCC---H--HHHHHHHh---HhhhcC---HHHHhcc--c------HHHH
Confidence 6899999999999954 3467788888875 2 23222222 111111 1122221 1 1111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhh
Q 017455 164 KNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERS 243 (371)
Q Consensus 164 ~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~ 243 (371)
.++.+.+.+ ... ....+++||+.++|+.|+++ ++++++||+. .......+..+++..+|...
T Consensus 58 ~~~~~~~~~---~~~-~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~---~~~~~~~~~~~~l~~~f~~~---------- 119 (197)
T PHA02597 58 KKLIEKYNN---SDF-IRYLSAYDDALDVINKLKED-YDFVAVTALG---DSIDALLNRQFNLNALFPGA---------- 119 (197)
T ss_pred HHHhhhhhH---HHH-HHhccCCCCHHHHHHHHHhc-CCEEEEeCCc---cchhHHHHhhCCHHHhCCCc----------
Confidence 222222221 111 23366999999999999987 5788889854 44555567788887665321
Q ss_pred hhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEE
Q 017455 244 LYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLI 323 (371)
Q Consensus 244 ~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~I 323 (371)
|+.++.++. .||.|++ |+.+++++| |++||||
T Consensus 120 -f~~i~~~~~-------------------------------~~~kp~~--------------~~~a~~~~~--~~~~v~v 151 (197)
T PHA02597 120 -FSEVLMCGH-------------------------------DESKEKL--------------FIKAKEKYG--DRVVCFV 151 (197)
T ss_pred -ccEEEEecc-------------------------------CcccHHH--------------HHHHHHHhC--CCcEEEe
Confidence 222222221 1455566 999999999 8999999
Q ss_pred eCCHhhHHHHHHc--CCcEEEECCCCCCCcccccccccchHHHHhh
Q 017455 324 AGSQSGVAGAQRI--GMPCVVMRSRCITTLPVSKTQRLADMLCRIL 367 (371)
Q Consensus 324 gDs~~Di~aA~~a--Gm~~v~v~~~~~~~~~l~~~~~~~~~l~~~l 367 (371)
||+..|+.+|+++ ||++|++.++.. ...+...+.+.++.|++
T Consensus 152 gDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 195 (197)
T PHA02597 152 DDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDIE 195 (197)
T ss_pred CCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHHh
Confidence 9999999999999 999999988854 22333345555555543
No 44
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.82 E-value=1.3e-19 Score=166.73 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=114.9
Q ss_pred CCCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhH
Q 017455 81 PPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKK 160 (371)
Q Consensus 81 ~~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (371)
.+++|+++|||||||++++. +..++..+|.+. ...+.+.... .| ...+...+..++..-...+
T Consensus 11 ~~~~k~iiFD~DGTL~~~~~------~~~l~~~~g~~~--~~~~~~~~~~---~g-~~~~~~~~~~~~~~~~~~~----- 73 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAET------IDEIAKIAGVEE--EVSEITERAM---RG-ELDFKASLRERVALLKGLP----- 73 (219)
T ss_pred hccCCEEEEeCcccCCCchH------HHHHHHHhCCHH--HHHHHHHHHH---cC-CCCHHHHHHHHHHHhCCCC-----
Confidence 45578999999999999753 356667777641 1111112211 12 1111111211211100100
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhH
Q 017455 161 AFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEV 240 (371)
Q Consensus 161 ~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~ 240 (371)
.+.+.... ...+++||+.++|+.|+++|++++|+|| +....+..+++.+|+.++|...+...+..
T Consensus 74 ----------~~~~~~~~--~~~~~~~g~~~~l~~l~~~g~~~~IvS~---~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 138 (219)
T TIGR00338 74 ----------VELLKEVR--ENLPLTEGAEELVKTLKEKGYKVAVISG---GFDLFAEHVKDKLGLDAAFANRLEVEDGK 138 (219)
T ss_pred ----------HHHHHHHH--hcCCcCCCHHHHHHHHHHCCCEEEEECC---CcHHHHHHHHHHcCCCceEeeEEEEECCE
Confidence 01122222 2356999999999999999999999999 44788999999999998886544332111
Q ss_pred HhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcE
Q 017455 241 ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNC 320 (371)
Q Consensus 241 ~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~ 320 (371)
+...+.|... ..+|.|.+ |+.+++++|++|++|
T Consensus 139 ----~~~~~~~~~~-----------------------------~~~~k~~~--------------~~~~~~~~~~~~~~~ 171 (219)
T TIGR00338 139 ----LTGLVEGPIV-----------------------------DASYKGKT--------------LLILLRKEGISPENT 171 (219)
T ss_pred ----EEEEecCccc-----------------------------CCcccHHH--------------HHHHHHHcCCCHHHE
Confidence 1111111110 01233444 999999999999999
Q ss_pred EEEeCCHhhHHHHHHcCCcEEE
Q 017455 321 FLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 321 I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
+||||+.+|+.+|+++|+.+++
T Consensus 172 i~iGDs~~Di~aa~~ag~~i~~ 193 (219)
T TIGR00338 172 VAVGDGANDLSMIKAAGLGIAF 193 (219)
T ss_pred EEEECCHHHHHHHHhCCCeEEe
Confidence 9999999999999999998765
No 45
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.81 E-value=2.5e-19 Score=155.86 Aligned_cols=154 Identities=21% Similarity=0.303 Sum_probs=108.8
Q ss_pred EEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHHHHH
Q 017455 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAFVKN 165 (371)
Q Consensus 86 aviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 165 (371)
+|+||+||||+|+... +..+|+++++++|.+ .+.+... .|.....+..+... .++
T Consensus 1 ~iifD~DGTL~d~~~~-~~~~~~~~~~~~~~~-----~~~~~~~----~g~~~~~~~~~~~~---------------~~~ 55 (154)
T TIGR01549 1 AILFDIDGTLVDSSFA-IRRAFEETLEEFGED-----FQALKAL----RGLAEELLYRIATS---------------FEE 55 (154)
T ss_pred CeEecCCCcccccHHH-HHHHHHHHHHHhccc-----HHHHHHH----HccChHHHHHHHHH---------------HHH
Confidence 4899999999999876 889999999998753 2222222 12111111111100 001
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhh
Q 017455 166 VLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLY 245 (371)
Q Consensus 166 l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f 245 (371)
+.. . ......+||+.++|+.|+++|++++|+||+. ...+...++.+ +.++|+.++. .++.
T Consensus 56 --------~~~-~-~~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~---~~~~~~~~~~~-l~~~f~~i~~-~~~~----- 115 (154)
T TIGR01549 56 --------LLG-Y-DAEEAYIRGAADLLKRLKEAGIKLGIISNGS---LRAQKLLLRKH-LGDYFDLILG-SDEF----- 115 (154)
T ss_pred --------HhC-c-chhheeccCHHHHHHHHHHCcCeEEEEeCCc---hHHHHHHHHHH-HHhcCcEEEe-cCCC-----
Confidence 111 1 1234578999999999999999999999954 67778888877 7777765432 2111
Q ss_pred ccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeC
Q 017455 246 GQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAG 325 (371)
Q Consensus 246 ~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgD 325 (371)
. .||+|++ |+.+++++|++| +|+||||
T Consensus 116 ---------~-----------------------------~Kp~~~~--------------~~~~~~~~~~~~-~~l~iGD 142 (154)
T TIGR01549 116 ---------G-----------------------------AKPEPEI--------------FLAALESLGLPP-EVLHVGD 142 (154)
T ss_pred ---------C-----------------------------CCcCHHH--------------HHHHHHHcCCCC-CEEEEeC
Confidence 1 2788888 999999999999 9999999
Q ss_pred CHhhHHHHHHcC
Q 017455 326 SQSGVAGAQRIG 337 (371)
Q Consensus 326 s~~Di~aA~~aG 337 (371)
+..|+.+|+++|
T Consensus 143 s~~Di~aa~~aG 154 (154)
T TIGR01549 143 NLNDIEGARNAG 154 (154)
T ss_pred CHHHHHHHHHcc
Confidence 999999999998
No 46
>PLN02954 phosphoserine phosphatase
Probab=99.81 E-value=5.1e-19 Score=163.34 Aligned_cols=209 Identities=13% Similarity=0.140 Sum_probs=123.7
Q ss_pred CCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHH
Q 017455 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKA 161 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (371)
+.+|+|+|||||||++++.. ..+++.+|... ..........++...+.+.+...++.... .
T Consensus 10 ~~~k~viFDfDGTL~~~~~~------~~~~~~~g~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~------ 70 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEGI------DELAEFCGAGE------AVAEWTAKAMGGSVPFEEALAARLSLFKP-S------ 70 (224)
T ss_pred ccCCEEEEeCCCcccchHHH------HHHHHHcCChH------HHHHHHHHHHCCCCCHHHHHHHHHHHcCC-C------
Confidence 45899999999999997653 77888888741 11222222222222233333332322110 0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc--ccchheeecchh
Q 017455 162 FVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE--RISKIKIVGNEE 239 (371)
Q Consensus 162 ~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~--~~f~~~i~~~~~ 239 (371)
.+. +.+.+......++||+.++|+.|+++|++++|+|+ +....+..+++.+|+. .+|...+...++
T Consensus 71 -----~~~----~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~---~~~~~i~~~l~~~gi~~~~~~~~~~~~~~~ 138 (224)
T PLN02954 71 -----LSQ----VEEFLEKRPPRLSPGIPELVKKLRARGTDVYLVSG---GFRQMIAPVAAILGIPPENIFANQILFGDS 138 (224)
T ss_pred -----HHH----HHHHHHHccCCCCccHHHHHHHHHHCCCEEEEECC---CcHHHHHHHHHHhCCChhhEEEeEEEEcCC
Confidence 111 12222122356899999999999999999999999 4588999999999996 455433222211
Q ss_pred HHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCc
Q 017455 240 VERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRN 319 (371)
Q Consensus 240 ~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e 319 (371)
..+.|.... +|. +..+++|.+ ++.+++.+|. ++
T Consensus 139 -------g~~~g~~~~------------------------------~~~-----~~~~~K~~~---i~~~~~~~~~--~~ 171 (224)
T PLN02954 139 -------GEYAGFDEN------------------------------EPT-----SRSGGKAEA---VQHIKKKHGY--KT 171 (224)
T ss_pred -------CcEECccCC------------------------------Ccc-----cCCccHHHH---HHHHHHHcCC--Cc
Confidence 111221100 000 001112222 7888888885 69
Q ss_pred EEEEeCCHhhHHHHHHcCCcEEEECCCCCCCc-ccccccccchHHHHhhh
Q 017455 320 CFLIAGSQSGVAGAQRIGMPCVVMRSRCITTL-PVSKTQRLADMLCRILK 368 (371)
Q Consensus 320 ~I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~-~l~~~~~~~~~l~~~l~ 368 (371)
||+|||+.+|+.+|+++|+.+++...+..... ....++.+++++.++++
T Consensus 172 ~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~ 221 (224)
T PLN02954 172 MVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDLIE 221 (224)
T ss_pred eEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHHHH
Confidence 99999999999999999998776543332222 12245667666666554
No 47
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.81 E-value=5.2e-20 Score=163.48 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=112.9
Q ss_pred EEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHH-HHHHHHhhcCChH---H----HHHHHHHHcCCCCCCCcc
Q 017455 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPI-YTDLLRKSAGDED---R----MLVLFFNRIGWPTSVPTN 157 (371)
Q Consensus 86 aviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~-~~~~~~~~~g~~~---~----~~~~~~~~~g~~~~~~~~ 157 (371)
+|+||+||||+|++.. +..+++.++...+.....|+... ...+.....|... . ....+..++|.+..
T Consensus 1 ~viFD~DGTL~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---- 75 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGG-VRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDAE---- 75 (175)
T ss_pred CeEEecCCcCcccHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCCC----
Confidence 5899999999999986 88888888776543100122211 1222222222111 1 33445566666532
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecc
Q 017455 158 EKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGN 237 (371)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~ 237 (371)
. ...+ .+.+.. ...+++||+.++|+ +++|+||+ ........++++|+.++|+.+ +++
T Consensus 76 --~----~~~~----~~~~~~--~~~~~~~g~~~~L~-------~~~i~Tn~---~~~~~~~~l~~~~l~~~fd~v-~~~ 132 (175)
T TIGR01493 76 --P----KYGE----RLRDAY--KNLPPWPDSAAALA-------RVAILSNA---SHWAFDQFAQQAGLPWYFDRA-FSV 132 (175)
T ss_pred --H----HHHH----HHHHHH--hcCCCCCchHHHHH-------HHhhhhCC---CHHHHHHHHHHCCCHHHHhhh-ccH
Confidence 1 1111 222221 23669999999998 48899995 478888999999999999874 444
Q ss_pred hhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCC
Q 017455 238 EEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPV 317 (371)
Q Consensus 238 ~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p 317 (371)
+++. ..||+|++ |+.+++++|++|
T Consensus 133 ~~~~------------------------------------------~~KP~p~~--------------f~~~~~~~~~~p 156 (175)
T TIGR01493 133 DTVR------------------------------------------AYKPDPVV--------------YELVFDTVGLPP 156 (175)
T ss_pred hhcC------------------------------------------CCCCCHHH--------------HHHHHHHHCCCH
Confidence 4432 23888888 999999999999
Q ss_pred CcEEEEeCCHhhHHHHHHc
Q 017455 318 RNCFLIAGSQSGVAGAQRI 336 (371)
Q Consensus 318 ~e~I~IgDs~~Di~aA~~a 336 (371)
++||||||+.+||.+|+++
T Consensus 157 ~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 157 DRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred HHeEeEecChhhHHHHhcC
Confidence 9999999999999999864
No 48
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.78 E-value=4.9e-18 Score=153.42 Aligned_cols=114 Identities=12% Similarity=0.100 Sum_probs=88.0
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
.+++||+.++|+.|+++|++++|+|| +....+..+++.+|+..+|...+.+.+.+
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~g---------------------- 133 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSG---GIMCLAKKVAEKLNPDYVYSNELVFDEKG---------------------- 133 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeC---CcHHHHHHHHHHhCCCeEEEEEEEEcCCC----------------------
Confidence 57999999999999999999999999 45889999999999988776554433211
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCcccc-CCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDI-DTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i-~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
..||++.. ++|. +..++ ++.+++++|+++++|+||||+.+|+.+|+.+|+.++
T Consensus 134 ---------------------~~~p~~~~~~~~~--~k~~~---~~~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a 187 (201)
T TIGR01491 134 ---------------------FIQPDGIVRVTFD--NKGEA---VERLKRELNPSLTETVAVGDSKNDLPMFEVADISIS 187 (201)
T ss_pred ---------------------eEecceeeEEccc--cHHHH---HHHHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEE
Confidence 11333322 1112 22233 788889999999999999999999999999999998
Q ss_pred EECCCC
Q 017455 342 VMRSRC 347 (371)
Q Consensus 342 ~v~~~~ 347 (371)
+.+++.
T Consensus 188 ~~~~~~ 193 (201)
T TIGR01491 188 LGDEGH 193 (201)
T ss_pred ECCCcc
Confidence 877554
No 49
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.75 E-value=3.3e-17 Score=152.08 Aligned_cols=191 Identities=13% Similarity=0.096 Sum_probs=117.8
Q ss_pred ceEEEEecCCccccccccCcHHHHH---HHHHHcCCCCCCCChHHHHHHHHhhcC-ChHHHHHHHHHHcCCCCCCCcchh
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFN---VAFQKLGLDCANWTAPIYTDLLRKSAG-DEDRMLVLFFNRIGWPTSVPTNEK 159 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~---~~~~~~g~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~g~~~~~~~~~~ 159 (371)
+++|+||+.||+.+.... ...-|- +.+.++--. .|..+........... ..+.+.+.+...+......+
T Consensus 1 ~~~~l~diegt~~~isfv-~~~lfpy~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~---- 73 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFV-HDVLFPYAASRLESFVND--NYESTIVENLRELGKTPEELILLRKLHAEMDKDRKAT---- 73 (220)
T ss_pred CCEEEEecCCCcccHHHH-HhhhhHHHHHHHHHHHHH--hCCCHHHHHHHHhccCCcHHHHHHHHHHHHHcCCCcc----
Confidence 478999999999987643 222222 222221111 2443444443221111 11333333333332222111
Q ss_pred HHHHHHHHHH-HHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHc---Cccccchheee
Q 017455 160 KAFVKNVLQE-KKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL---GSERISKIKIV 235 (371)
Q Consensus 160 ~~~~~~l~~~-~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~l---gl~~~f~~~i~ 235 (371)
-.+.+... +.+.|... ....+++||+.++|+.|+++|++++|+||++ ......+++.+ ++.++|+..
T Consensus 74 --~lk~lqg~iw~~~Y~~~--~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s---~~~~~~~~~~~~~~~L~~~f~~~-- 144 (220)
T TIGR01691 74 --PLKTLQGLIWRQGYESG--ELTSHLYPDVPPALEAWLQLGLRLAVYSSGS---VPAQKLLFGHSDAGNLTPYFSGY-- 144 (220)
T ss_pred --hHHHHHHHHHHHHHhcC--CcccCcCcCHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHhhccccchhhhcceE--
Confidence 12233332 22333221 2346799999999999999999999999954 56666666665 555666542
Q ss_pred cchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCC
Q 017455 236 GNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEK 315 (371)
Q Consensus 236 ~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv 315 (371)
|+.. . ..||+|++ |+.+++++|+
T Consensus 145 ---------fd~~-~---------------------------------g~KP~p~~--------------y~~i~~~lgv 167 (220)
T TIGR01691 145 ---------FDTT-V---------------------------------GLKTEAQS--------------YVKIAGQLGS 167 (220)
T ss_pred ---------EEeC-c---------------------------------ccCCCHHH--------------HHHHHHHhCc
Confidence 1110 0 12788888 9999999999
Q ss_pred CCCcEEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 316 PVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 316 ~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
+|++|+||||+..|+++|+++||++|++.++.
T Consensus 168 ~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g 199 (220)
T TIGR01691 168 PPREILFLSDIINELDAARKAGLHTGQLVRPG 199 (220)
T ss_pred ChhHEEEEeCCHHHHHHHHHcCCEEEEEECCC
Confidence 99999999999999999999999999987654
No 50
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.75 E-value=1.1e-17 Score=163.56 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=116.3
Q ss_pred CCCceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhH
Q 017455 81 PPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKK 160 (371)
Q Consensus 81 ~~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (371)
..++++++|||||||+.. ..+.++++..|... ...........+...+.+.+..++..-...
T Consensus 107 ~~~~~LvvfDmDGTLI~~------e~i~eia~~~g~~~------~v~~it~~~m~Geldf~esl~~rv~~l~g~------ 168 (322)
T PRK11133 107 LRTPGLLVMDMDSTAIQI------ECIDEIAKLAGTGE------EVAEVTERAMRGELDFEASLRQRVATLKGA------ 168 (322)
T ss_pred ccCCCEEEEECCCCCcch------HHHHHHHHHhCCch------HHHHHHHHHHcCCcCHHHHHHHHHHHhCCC------
Confidence 456899999999999843 44567777777652 111111111112222322222222111000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhH
Q 017455 161 AFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEV 240 (371)
Q Consensus 161 ~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~ 240 (371)
....+.... ..++++||+.++|+.|+++|++++|+|+ ++..+++.+++++|+++.+...+. +
T Consensus 169 ---------~~~il~~v~--~~l~l~pGa~elL~~Lk~~G~~~aIvSg---g~~~~~~~l~~~Lgld~~~an~le----i 230 (322)
T PRK11133 169 ---------DANILQQVR--ENLPLMPGLTELVLKLQALGWKVAIASG---GFTYFADYLRDKLRLDAAVANELE----I 230 (322)
T ss_pred ---------CHHHHHHHH--HhCCCChhHHHHHHHHHHcCCEEEEEEC---CcchhHHHHHHHcCCCeEEEeEEE----E
Confidence 001111111 2367999999999999999999999999 457778899999999875543221 1
Q ss_pred HhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcE
Q 017455 241 ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNC 320 (371)
Q Consensus 241 ~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~ 320 (371)
..+.+...+.|..+ .+ ||.+++ ++.+++++|+++++|
T Consensus 231 ~dg~ltg~v~g~iv-~~----------------------------k~K~~~--------------L~~la~~lgi~~~qt 267 (322)
T PRK11133 231 MDGKLTGNVLGDIV-DA----------------------------QYKADT--------------LTRLAQEYEIPLAQT 267 (322)
T ss_pred ECCEEEeEecCccC-Cc----------------------------ccHHHH--------------HHHHHHHcCCChhhE
Confidence 11122223333211 11 344444 999999999999999
Q ss_pred EEEeCCHhhHHHHHHcCCcEEE
Q 017455 321 FLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 321 I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
|+|||+.||+.|++.||+.+++
T Consensus 268 IaVGDg~NDl~m~~~AGlgiA~ 289 (322)
T PRK11133 268 VAIGDGANDLPMIKAAGLGIAY 289 (322)
T ss_pred EEEECCHHHHHHHHHCCCeEEe
Confidence 9999999999999999999888
No 51
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=149.97 Aligned_cols=189 Identities=16% Similarity=0.194 Sum_probs=129.3
Q ss_pred CCCceEEEEecCCccccccccCcHHHHH----H-HHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCC
Q 017455 81 PPRDLAVLLEVDGVLVDAYRFGNRQAFN----V-AFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVP 155 (371)
Q Consensus 81 ~~~~kaviFD~DGTL~d~~~~~~~~a~~----~-~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 155 (371)
.+.+++++||+|.||+.... +...+.+ + +..++|++. .-..+....++...+ ..|.. +...|...+
T Consensus 12 ~~~~~~l~FDiDdtLYp~St-~i~~~~~~nI~~f~~eklgi~~-e~a~~L~~~~yk~YG---~t~aG--L~~~~~~~d-- 82 (244)
T KOG3109|consen 12 GPNYKCLFFDIDDTLYPLST-GIQLMMRNNIQEFFVEKLGISE-EEAEELRESLYKEYG---LTMAG--LKAVGYIFD-- 82 (244)
T ss_pred CccceEEEEecccccccCch-hHHHHHHHHHHHHHHHHhCCCh-hhhHHHHHHHHHHHh---HHHHH--HHHhcccCC--
Confidence 34799999999999998765 3444444 3 335688863 111112222221111 01111 112222221
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheee
Q 017455 156 TNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIV 235 (371)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~ 235 (371)
..++.+.....+.-+.++|-|..+.+|-.|++++ .++.|| ++...+.+++++||++++|+.++.
T Consensus 83 -----------~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTN---a~k~HA~r~Lk~LGieDcFegii~ 146 (244)
T KOG3109|consen 83 -----------ADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTN---AYKVHAIRILKKLGIEDCFEGIIC 146 (244)
T ss_pred -----------HHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecC---CcHHHHHHHHHHhChHHhccceeE
Confidence 2344444555554456889999999999999875 789999 558999999999999999998643
Q ss_pred cchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccC--ccccCCCCCchhHHHHHHHHHHHHHc
Q 017455 236 GNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKL--SVDIDTSSPESLDKIVAALRAGAEYA 313 (371)
Q Consensus 236 ~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP--~p~i~~p~~~~~~~~~~~~~~a~~~l 313 (371)
-. - . -| .+-+|||+++ ||+.+.+..
T Consensus 147 ~e-~--------~-------------------------------------np~~~~~vcKP~~~-------afE~a~k~a 173 (244)
T KOG3109|consen 147 FE-T--------L-------------------------------------NPIEKTVVCKPSEE-------AFEKAMKVA 173 (244)
T ss_pred ee-c--------c-------------------------------------CCCCCceeecCCHH-------HHHHHHHHh
Confidence 21 1 1 13 4556788877 499999999
Q ss_pred CCC-CCcEEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 314 EKP-VRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 314 gv~-p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
|++ |.+|+||+||..+|++|++.||++|++...+
T Consensus 174 gi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 174 GIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred CCCCcCceEEEcCchhhHHHHHhccceeEEEEeee
Confidence 998 9999999999999999999999999997543
No 52
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.73 E-value=2.8e-17 Score=147.62 Aligned_cols=131 Identities=15% Similarity=0.051 Sum_probs=91.2
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCC----C--------cHHHHHHHHHcCccccchheeecchhHHhhhhcccccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKS----G--------DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLG 251 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~----~--------~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g 251 (371)
.++||+.++|+.|+++|++++|+||.+.. . .......++++|+ .|+.++.+.. ...
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~----------~~~ 96 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPH----------HPE 96 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCC----------CCC
Confidence 37899999999999999999999995410 0 1223445566665 2443322110 001
Q ss_pred ccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHH
Q 017455 252 KGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVA 331 (371)
Q Consensus 252 ~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~ 331 (371)
+.+. ..||+|++ |+.+++++|++|++|+||||+.+|+.
T Consensus 97 ~~~~----------------------------~~KP~p~~--------------~~~~~~~l~~~~~~~~~VgDs~~Di~ 134 (181)
T PRK08942 97 DGCD----------------------------CRKPKPGM--------------LLSIAERLNIDLAGSPMVGDSLRDLQ 134 (181)
T ss_pred CCCc----------------------------CCCCCHHH--------------HHHHHHHcCCChhhEEEEeCCHHHHH
Confidence 1111 23888888 99999999999999999999999999
Q ss_pred HHHHcCCcEEEECCCCCCCcccc-cc--cccchHHHHhhh
Q 017455 332 GAQRIGMPCVVMRSRCITTLPVS-KT--QRLADMLCRILK 368 (371)
Q Consensus 332 aA~~aGm~~v~v~~~~~~~~~l~-~~--~~~~~~l~~~l~ 368 (371)
+|+++||++|++.++........ .+ +.+++++.++++
T Consensus 135 ~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~ 174 (181)
T PRK08942 135 AAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQ 174 (181)
T ss_pred HHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHHH
Confidence 99999999999988764322222 23 566666666554
No 53
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.73 E-value=2.5e-17 Score=143.26 Aligned_cols=108 Identities=14% Similarity=0.179 Sum_probs=81.0
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCC------------cHHHHHHHHHcCccccchheeecchhHHhhhhccccccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSG------------DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGK 252 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~------------~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~ 252 (371)
++||+.++|+.|+++|++++|+||..+.. ...+...++.+|+...+.+ ... ....+
T Consensus 28 ~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~~----------~~~~~ 95 (147)
T TIGR01656 28 LRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVL--FCP----------HHPAD 95 (147)
T ss_pred EcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEE--ECC----------CCCCC
Confidence 78999999999999999999999954100 1355667788888632111 000 00001
Q ss_pred cccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHH
Q 017455 253 GISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAG 332 (371)
Q Consensus 253 ~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~a 332 (371)
.. +..||+|++ |+.+++++|++|++||||||+..|+++
T Consensus 96 ~~----------------------------~~~KP~~~~--------------~~~~~~~~~~~~~e~i~IGDs~~Di~~ 133 (147)
T TIGR01656 96 NC----------------------------SCRKPKPGL--------------ILEALKRLGVDASRSLVVGDRLRDLQA 133 (147)
T ss_pred CC----------------------------CCCCCCHHH--------------HHHHHHHcCCChHHEEEEcCCHHHHHH
Confidence 11 123788888 999999999999999999999999999
Q ss_pred HHHcCCcEEEECCC
Q 017455 333 AQRIGMPCVVMRSR 346 (371)
Q Consensus 333 A~~aGm~~v~v~~~ 346 (371)
|+++||++|++.+|
T Consensus 134 A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 134 ARNAGLAAVLLVDG 147 (147)
T ss_pred HHHCCCCEEEecCC
Confidence 99999999999864
No 54
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.69 E-value=1.6e-16 Score=146.92 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=77.1
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhH
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
..+++||+.++|+.|+++|++++|+||+ ....+..+++++ +.. +. +++. +..+.|..+.
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~---~~~~i~~il~~~-~~~--~~-i~~n--------~~~~~~~~~~------ 130 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGG---MDFFVYPLLQGL-IPK--EQ-IYCN--------GSDFSGEYIT------ 130 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCC---cHHHHHHHHHHh-CCc--Cc-EEEe--------EEEecCCeeE------
Confidence 3679999999999999999999999994 478899999987 643 11 1111 1112233222
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCC---CCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCC
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDT---SSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 338 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~---p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm 338 (371)
..||+|.... -.... ...++++++.++.+||||||+.+|+.+|++||+
T Consensus 131 ----------------------~~kp~p~~~~~~~~~~~~-------K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~ 181 (219)
T PRK09552 131 ----------------------ITWPHPCDEHCQNHCGCC-------KPSLIRKLSDTNDFHIVIGDSITDLEAAKQADK 181 (219)
T ss_pred ----------------------EeccCCccccccccCCCc-------hHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCc
Confidence 2367765410 00000 245788899999999999999999999999999
Q ss_pred cEE
Q 017455 339 PCV 341 (371)
Q Consensus 339 ~~v 341 (371)
.++
T Consensus 182 ~~a 184 (219)
T PRK09552 182 VFA 184 (219)
T ss_pred cee
Confidence 444
No 55
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.67 E-value=1.3e-15 Score=142.70 Aligned_cols=109 Identities=8% Similarity=0.137 Sum_probs=80.3
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCC-CcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKS-GDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~-~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
..+.+++.++|+.++++|++++++||...+ .+..+..+++.+|+.++|+.+ ++++.. ...
T Consensus 113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i-~~~d~~--------------~~~---- 173 (237)
T TIGR01672 113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVI-FAGDKP--------------GQY---- 173 (237)
T ss_pred CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEE-ECCCCC--------------CCC----
Confidence 457888999999999999999999996421 456888888899999888653 333221 110
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
||+| . .+++++|+ +|||||+.+|+.+|+++||++|
T Consensus 174 ------------------------Kp~~----------------~-~~l~~~~i----~i~vGDs~~DI~aAk~AGi~~I 208 (237)
T TIGR01672 174 ------------------------QYTK----------------T-QWIQDKNI----RIHYGDSDNDITAAKEAGARGI 208 (237)
T ss_pred ------------------------CCCH----------------H-HHHHhCCC----eEEEeCCHHHHHHHHHCCCCEE
Confidence 2221 2 23566776 7999999999999999999999
Q ss_pred EECCCCCCCc-cccc
Q 017455 342 VMRSRCITTL-PVSK 355 (371)
Q Consensus 342 ~v~~~~~~~~-~l~~ 355 (371)
.+.+++.+.- +++.
T Consensus 209 ~V~~g~~s~~~~~~~ 223 (237)
T TIGR01672 209 RILRASNSTYKPLPQ 223 (237)
T ss_pred EEEecCCCCCCCccc
Confidence 9987765443 5554
No 56
>PRK06769 hypothetical protein; Validated
Probab=99.66 E-value=2.8e-16 Score=140.59 Aligned_cols=129 Identities=14% Similarity=0.110 Sum_probs=92.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCC-----cHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSG-----DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 258 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~-----~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~ 258 (371)
.++|||.++|+.|+++|++++|+||+..-. .......++.+|++++|...... ++++.
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--------------~~~~~--- 90 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKH--------------GDGCE--- 90 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCC--------------CCCCC---
Confidence 489999999999999999999999953100 01133346677776654321111 11111
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCC
Q 017455 259 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 338 (371)
Q Consensus 259 ~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm 338 (371)
..||+|++ |+.+++++|++|++|+||||+..|+.+|+++||
T Consensus 91 -------------------------~~KP~p~~--------------~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi 131 (173)
T PRK06769 91 -------------------------CRKPSTGM--------------LLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNA 131 (173)
T ss_pred -------------------------CCCCCHHH--------------HHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCC
Confidence 23888888 999999999999999999999999999999999
Q ss_pred cEEEECCCCCCC------ccc--ccccccchHHHHhhh
Q 017455 339 PCVVMRSRCITT------LPV--SKTQRLADMLCRILK 368 (371)
Q Consensus 339 ~~v~v~~~~~~~------~~l--~~~~~~~~~l~~~l~ 368 (371)
++|++.++.... +.+ ..++.+++++.++++
T Consensus 132 ~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~ 169 (173)
T PRK06769 132 TTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVN 169 (173)
T ss_pred eEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHH
Confidence 999998876432 112 234556666666554
No 57
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.64 E-value=2.6e-15 Score=136.57 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=74.3
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
.+++||+.++|+.|+++ ++++|+|| +....++.+++++|+..+|...+...++. ++.|..
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~---~~~~~~~~~l~~~gl~~~f~~~~~~~~~~-------~i~~~~--------- 126 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSD---TFYEFAGPLMRQLGWPTLFCHSLEVDEDG-------MITGYD--------- 126 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeC---CcHHHHHHHHHHcCCchhhcceEEECCCC-------eEECcc---------
Confidence 66899999999999999 99999999 55889999999999988876543222111 111111
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
+|.| ++ ...+++.++..+++|+||||+.+|+.+++++|+.+.
T Consensus 127 -----------------------~~~p-------~~-------k~~~l~~~~~~~~~~v~iGDs~~D~~~~~aa~~~v~ 168 (205)
T PRK13582 127 -----------------------LRQP-------DG-------KRQAVKALKSLGYRVIAAGDSYNDTTMLGEADAGIL 168 (205)
T ss_pred -----------------------cccc-------ch-------HHHHHHHHHHhCCeEEEEeCCHHHHHHHHhCCCCEE
Confidence 1111 11 234455666677999999999999999999999664
No 58
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.64 E-value=9.5e-16 Score=137.21 Aligned_cols=137 Identities=10% Similarity=0.036 Sum_probs=91.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCC----C--------cHHHHHHHHHcCccccchheeecchhHHhhhhccccc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKS----G--------DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL 250 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~----~--------~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~ 250 (371)
..++||+.++|+.|+++|++++|+||+... . ......++..+++. |+.++.+.. + ..
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~-~--------~~ 93 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPH-H--------PE 93 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCC-C--------Cc
Confidence 348999999999999999999999996410 0 02233445555544 333222110 0 00
Q ss_pred cccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhH
Q 017455 251 GKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGV 330 (371)
Q Consensus 251 g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di 330 (371)
+.+.. .+..+..||+|++ |+.+++++|++|++||||||+..||
T Consensus 94 ~~~~~-----------------------~~~~~~~KP~p~~--------------~~~a~~~~~~~~~~~v~VGDs~~Di 136 (176)
T TIGR00213 94 GVEEF-----------------------RQVCDCRKPKPGM--------------LLQARKELHIDMAQSYMVGDKLEDM 136 (176)
T ss_pred ccccc-----------------------cCCCCCCCCCHHH--------------HHHHHHHcCcChhhEEEEcCCHHHH
Confidence 00000 0011235888888 9999999999999999999999999
Q ss_pred HHHHHcCCcE-EEECCCCCCCccc-ccccccchHHHHhh
Q 017455 331 AGAQRIGMPC-VVMRSRCITTLPV-SKTQRLADMLCRIL 367 (371)
Q Consensus 331 ~aA~~aGm~~-v~v~~~~~~~~~l-~~~~~~~~~l~~~l 367 (371)
++|+++|+++ +++.++....... ..++.+++++-+++
T Consensus 137 ~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 137 QAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred HHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence 9999999998 7998876533333 23566777766654
No 59
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.62 E-value=2e-15 Score=134.31 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=77.4
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCC---------cHHHHHHHHHcCccccchheeecchhHHhhhhcccccccccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSG---------DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGIS 255 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~---------~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~ 255 (371)
++||+.++|+.|+++|++++|+||..... ...+..+++.+|+.. +.++.+. +..
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~ii~~~-~~~-------------- 105 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVLAATH-AGL-------------- 105 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEEEecC-CCC--------------
Confidence 68999999999999999999999954210 024677889999853 2222222 110
Q ss_pred CCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcC--CCCCcEEEEeCCH------
Q 017455 256 SGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE--KPVRNCFLIAGSQ------ 327 (371)
Q Consensus 256 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lg--v~p~e~I~IgDs~------ 327 (371)
..||+|++ |+.+++++| +++++|+||||+.
T Consensus 106 ----------------------------~~KP~p~~--------------~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~ 143 (166)
T TIGR01664 106 ----------------------------YRKPMTGM--------------WEYLQSQYNSPIKMTRSFYVGDAAGRKLDF 143 (166)
T ss_pred ----------------------------CCCCccHH--------------HHHHHHHcCCCCCchhcEEEECCCCCCCCC
Confidence 23788888 999999999 9999999999996
Q ss_pred --hhHHHHHHcCCcEEE
Q 017455 328 --SGVAGAQRIGMPCVV 342 (371)
Q Consensus 328 --~Di~aA~~aGm~~v~ 342 (371)
+|+++|+++|+++++
T Consensus 144 ~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 144 SDADIKFAKNLGLEFKY 160 (166)
T ss_pred chhHHHHHHHCCCCcCC
Confidence 699999999999875
No 60
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.59 E-value=2.5e-14 Score=132.13 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=91.1
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
.+++||+.++++.++++|++++|+|+ ++...++.+.+++|++..+...+...+ + .|+.-+.|.-+...
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSg---g~~~lv~~ia~~lg~d~~~an~l~~~d-G---~ltG~v~g~~~~~~----- 143 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISG---GFTFLVEPIAERLGIDYVVANELEIDD-G---KLTGRVVGPICDGE----- 143 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcC---ChHHHHHHHHHHhCCchheeeEEEEeC-C---EEeceeeeeecCcc-----
Confidence 67999999999999999999999999 679999999999999998877655443 2 34444444333210
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
.|. .+++..++.+|+++++++++|||.||+.+.+.+|.+.++
T Consensus 144 ----~K~----------------------------------~~l~~~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~ 185 (212)
T COG0560 144 ----GKA----------------------------------KALRELAAELGIPLEETVAYGDSANDLPMLEAAGLPIAV 185 (212)
T ss_pred ----hHH----------------------------------HHHHHHHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEe
Confidence 011 127888999999999999999999999999999999998
Q ss_pred ECCC
Q 017455 343 MRSR 346 (371)
Q Consensus 343 v~~~ 346 (371)
-..+
T Consensus 186 n~~~ 189 (212)
T COG0560 186 NPKP 189 (212)
T ss_pred CcCH
Confidence 7643
No 61
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.58 E-value=6.4e-14 Score=127.14 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=83.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
..++||+.++|+.++++|++++|+|+ ++...++.+++.+|++++|...+...+++ ..+|+
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~---s~~~~v~~~~~~lg~~~~~~~~l~~~~~g-------~~~g~---------- 145 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSA---SLTILVKPLARILGIDNAIGTRLEESEDG-------IYTGN---------- 145 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeC---CcHHHHHHHHHHcCCcceEecceEEcCCC-------EEeCC----------
Confidence 35899999999999999999999999 55899999999999998776533221111 11221
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
+....+ ..+.+.. +++..+++.++++++|+++|||.+|+.+++.+|..++.
T Consensus 146 ------------------------~~~~~~--~g~~K~~---~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v 196 (202)
T TIGR01490 146 ------------------------IDGNNC--KGEGKVH---ALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVV 196 (202)
T ss_pred ------------------------ccCCCC--CChHHHH---HHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEe
Confidence 110000 0111111 27888899999999999999999999999999999887
Q ss_pred ECC
Q 017455 343 MRS 345 (371)
Q Consensus 343 v~~ 345 (371)
..+
T Consensus 197 ~~~ 199 (202)
T TIGR01490 197 NPD 199 (202)
T ss_pred CCC
Confidence 654
No 62
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.57 E-value=6.7e-15 Score=141.17 Aligned_cols=113 Identities=12% Similarity=0.014 Sum_probs=78.4
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHHH
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLAT 264 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~ 264 (371)
-++|+.++++.|+++|+ ++|+||.... ......+...|+..+|+.+. ....++.+.
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~--~~~~~~~~~~~~g~~~~~i~------------~~~g~~~~~--------- 199 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPW--HPLSDGSRTPGTGSLVAAIE------------TASGRQPLV--------- 199 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCC--CCCcCCCcccChHHHHHHHH------------HHhCCceec---------
Confidence 48899999999998887 7899995421 11011122234444443210 000111111
Q ss_pred HHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCcEEEE
Q 017455 265 EARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVM 343 (371)
Q Consensus 265 ~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~~v~v 343 (371)
..||+|.+ |+.+++++|++|++|+||||+. .||.+|+++||++|+|
T Consensus 200 -------------------~gKP~p~~--------------~~~~~~~~~~~~~~~lmIGD~~~tDI~~A~~aGi~si~V 246 (279)
T TIGR01452 200 -------------------VGKPSPYM--------------FECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLV 246 (279)
T ss_pred -------------------cCCCCHHH--------------HHHHHHHhCCChhhEEEECCChHHHHHHHHHcCCcEEEE
Confidence 23788888 9999999999999999999995 8999999999999999
Q ss_pred CCCCCCCcccc
Q 017455 344 RSRCITTLPVS 354 (371)
Q Consensus 344 ~~~~~~~~~l~ 354 (371)
.+|....+++.
T Consensus 247 ~~G~~~~~~l~ 257 (279)
T TIGR01452 247 LSGVSRLEEAQ 257 (279)
T ss_pred CCCCCCHHHHH
Confidence 99987655554
No 63
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.56 E-value=7.2e-15 Score=130.13 Aligned_cols=107 Identities=9% Similarity=0.113 Sum_probs=86.4
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCC------------CcHHHHHHHHHcCccccchheeec----chhHHhhhhc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKS------------GDRIARSVVEKLGSERISKIKIVG----NEEVERSLYG 246 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~------------~~~~~~~~l~~lgl~~~f~~~i~~----~~~~~~~~f~ 246 (371)
.+++||+.++|+.|+++|++++|+||...- ....+..+++.+|+. |+.++++ .++.
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~------ 99 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNC------ 99 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCC------
Confidence 458999999999999999999999995210 234667788889986 6544443 1111
Q ss_pred cccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCC
Q 017455 247 QFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS 326 (371)
Q Consensus 247 ~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs 326 (371)
+.+||+|++ |+.+++++|++|++|+||||+
T Consensus 100 ------------------------------------~~~KP~~~~--------------~~~~~~~~~~~~~e~l~IGD~ 129 (161)
T TIGR01261 100 ------------------------------------DCRKPKIKL--------------LEPYLKKNLIDKARSYVIGDR 129 (161)
T ss_pred ------------------------------------CCCCCCHHH--------------HHHHHHHcCCCHHHeEEEeCC
Confidence 134888888 999999999999999999999
Q ss_pred HhhHHHHHHcCCcEEEECCCC
Q 017455 327 QSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 327 ~~Di~aA~~aGm~~v~v~~~~ 347 (371)
.+|+++|+++||+++++.++.
T Consensus 130 ~~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 130 ETDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred HHHHHHHHHCCCeEEEEChhh
Confidence 999999999999999998653
No 64
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.56 E-value=4.2e-14 Score=126.22 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=75.2
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
.+++||+.++|+.|+++|++++|+||+ ....+..+++.+|+.++|+.+ ++++....+ ..+..+..-.+..
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~---~~~~~~~~l~~~~l~~~f~~i-~~~~~~~~~--~g~~~~~~~~~~~---- 140 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDG---NDFFIDPVLEGIGEKDVFIEI-YSNPASFDN--DGRHIVWPHHCHG---- 140 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCC---cHHHHHHHHHHcCChhheeEE-eccCceECC--CCcEEEecCCCCc----
Confidence 579999999999999999999999994 478889999999999999874 444332110 0011110000000
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 340 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~ 340 (371)
-...|....++++ ++...+.. ++++|||||+.+|+.+|+++++-+
T Consensus 141 ---------------------------~~~~~~g~~K~~~---~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 141 ---------------------------CCSCPCGCCKGKV---IHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred ---------------------------cCcCCCCCCHHHH---HHHHHhhc---CceEEEECCCcchhchHhcCCccc
Confidence 0000001112333 55555544 899999999999999999986543
No 65
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.56 E-value=3.8e-14 Score=117.99 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=85.8
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
..++||+.++|+.|+++|++++++||+ ....+...++.+|+..+++.++................ +
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~----- 88 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNK---SRREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFL------G----- 88 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCc---hHHHHHHHHHHcCCchhhhheeccchhhhhcccccccc------c-----
Confidence 558999999999999999999999994 47889999999999877776543322211100000000 0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
.......||.+.. +..++++++..++++++|||+.+|+.+|+++|+++++
T Consensus 89 ----------------~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~ 138 (139)
T cd01427 89 ----------------GGPFDIGKPNPDK--------------LLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVA 138 (139)
T ss_pred ----------------ccccccCCCCHHH--------------HHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceee
Confidence 0011122555555 8999999999999999999999999999999999987
Q ss_pred E
Q 017455 343 M 343 (371)
Q Consensus 343 v 343 (371)
+
T Consensus 139 v 139 (139)
T cd01427 139 V 139 (139)
T ss_pred C
Confidence 5
No 66
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.55 E-value=9.7e-14 Score=127.40 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=76.2
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
++++||+.++|+.++++| +++|+|+ +....+..+++.+|++++|...+...+. ..++|..+..
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~---~~~~~~~~il~~lgi~~~~an~l~~~~~-------g~~tG~~~~~------ 129 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSD---TFYEFSQPLMRQLGFPTLLCHKLEIDDS-------DRVVGYQLRQ------ 129 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeC---ChHHHHHHHHHHcCCchhhceeeEEecC-------CeeECeeecC------
Confidence 569999999999999975 9999999 5689999999999999887643332110 1223322211
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
||.+.- +...++..|. +|++|||+.||+.+++.+|+.+++
T Consensus 130 -----------------------~~~K~~--------------~l~~l~~~~~---~~v~vGDs~nDl~ml~~Ag~~ia~ 169 (203)
T TIGR02137 130 -----------------------KDPKRQ--------------SVIAFKSLYY---RVIAAGDSYNDTTMLSEAHAGILF 169 (203)
T ss_pred -----------------------cchHHH--------------HHHHHHhhCC---CEEEEeCCHHHHHHHHhCCCCEEe
Confidence 111111 2223345553 899999999999999999999999
Q ss_pred ECCC
Q 017455 343 MRSR 346 (371)
Q Consensus 343 v~~~ 346 (371)
...+
T Consensus 170 ~ak~ 173 (203)
T TIGR02137 170 HAPE 173 (203)
T ss_pred cCCH
Confidence 8754
No 67
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.54 E-value=8.9e-15 Score=130.98 Aligned_cols=108 Identities=12% Similarity=0.016 Sum_probs=87.7
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc---------ccchheeecchhHHhhhhccccccc
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE---------RISKIKIVGNEEVERSLYGQFVLGK 252 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~---------~~f~~~i~~~~~~~~~~f~~~v~g~ 252 (371)
...++||+.++|+.|+++|++++|+||+. ....++.+++.+|+. ++|+.++.+. +..
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~--~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~-~~~----------- 108 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWND--VPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIY-KPN----------- 108 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCC--ChHHHHHHHHhCCcCCCCCcccHHHhceeeeecc-CCc-----------
Confidence 46699999999999999999999999941 467888899999998 8887754332 110
Q ss_pred cccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHc--CCCCCcEEEEeCCHhhH
Q 017455 253 GISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYA--EKPVRNCFLIAGSQSGV 330 (371)
Q Consensus 253 ~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~l--gv~p~e~I~IgDs~~Di 330 (371)
..||.+.+ ++.+.+.+ |++|++|+||||+..|+
T Consensus 109 -------------------------------~~kp~~~i--------------~~~~~~~~~~gl~p~e~l~VgDs~~di 143 (174)
T TIGR01685 109 -------------------------------KAKQLEMI--------------LQKVNKVDPSVLKPAQILFFDDRTDNV 143 (174)
T ss_pred -------------------------------hHHHHHHH--------------HHHhhhcccCCCCHHHeEEEcChhHhH
Confidence 11555555 77777777 89999999999999999
Q ss_pred HHHHHcCCcEEEECCCCC
Q 017455 331 AGAQRIGMPCVVMRSRCI 348 (371)
Q Consensus 331 ~aA~~aGm~~v~v~~~~~ 348 (371)
.+|+++|+++|++.++..
T Consensus 144 ~aA~~aGi~~i~v~~g~~ 161 (174)
T TIGR01685 144 REVWGYGVTSCYCPSGMD 161 (174)
T ss_pred HHHHHhCCEEEEcCCCcc
Confidence 999999999999988754
No 68
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.53 E-value=1.1e-14 Score=138.26 Aligned_cols=127 Identities=14% Similarity=0.062 Sum_probs=88.0
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHHH
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLAT 264 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~ 264 (371)
.++++.+.+..|++.+++++++||.. ..........+|+..+|+.+.. ... ++.+.
T Consensus 121 ~y~~l~~a~~~L~~~~~~~~iatn~~---~~~~~~~~~~~g~g~~~~~i~~-~~~-----------~~~~~--------- 176 (257)
T TIGR01458 121 SYQILNQAFRLLLDGAKPLLIAIGKG---RYYKRKDGLALDVGPFVTALEY-ATD-----------TKATV--------- 176 (257)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeCCC---CCCcCCCCCCCCchHHHHHHHH-HhC-----------CCcee---------
Confidence 47889999999999999999999954 2323333445566666654210 000 00001
Q ss_pred HHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCcEEEE
Q 017455 265 EARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVM 343 (371)
Q Consensus 265 ~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~~v~v 343 (371)
..||+|++ |+.+++++|++|++|+||||+. +||.+|+++||++|+|
T Consensus 177 -------------------~gKP~p~~--------------~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v 223 (257)
T TIGR01458 177 -------------------VGKPSKTF--------------FLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQV 223 (257)
T ss_pred -------------------ecCCCHHH--------------HHHHHHHhCCChhhEEEECCCcHHHHHHHHHcCCeEEEE
Confidence 13788887 9999999999999999999996 8999999999999999
Q ss_pred CCCCCCCccc----ccccccchHHHHhhh
Q 017455 344 RSRCITTLPV----SKTQRLADMLCRILK 368 (371)
Q Consensus 344 ~~~~~~~~~l----~~~~~~~~~l~~~l~ 368 (371)
.+|.....+. ..++.+++++.++++
T Consensus 224 ~~G~~~~~~~~~~~~~pd~~~~sl~el~~ 252 (257)
T TIGR01458 224 RTGKYRPSDEEKINVPPDLTCDSLPHAVD 252 (257)
T ss_pred CCCCCChHHhcccCCCCCEEECCHHHHHH
Confidence 9885332211 234566666666554
No 69
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.53 E-value=8.3e-14 Score=123.38 Aligned_cols=107 Identities=17% Similarity=0.260 Sum_probs=76.3
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhH
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
..+++||+.++++.++++|++++|+|+ +....++.+++.+|+.+++...+...+++ .++|....
T Consensus 71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~---~~~~~i~~~~~~~g~~~~~~~~~~~~~~g-------~~~g~~~~------ 134 (177)
T TIGR01488 71 QVALRPGARELISWLKERGIDTVIVSG---GFDFFVEPVAEKLGIDDVFANRLEFDDNG-------LLTGPIEG------ 134 (177)
T ss_pred cCCcCcCHHHHHHHHHHCCCEEEEECC---CcHHHHHHHHHHcCCchheeeeEEECCCC-------EEeCccCC------
Confidence 466899999999999999999999999 45889999999999988766544322111 11121000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHc
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI 336 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~a 336 (371)
||. |....++.+ ++..++.+|++++++++|||+.+|+.+++.+
T Consensus 135 ------------------------~~~-----~~~~~K~~~---l~~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 135 ------------------------QVN-----PEGECKGKV---LKELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred ------------------------ccc-----CCcchHHHH---HHHHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 000 111222233 6777888899999999999999999999864
No 70
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.52 E-value=1.1e-13 Score=127.49 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=75.9
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhH
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
..+++||+.++|+.|+++|++++|+|+ +....+..+++.++....+ ++++ ..+.+..+.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~---~~~~~i~~il~~~~~~~~i----~~n~--------~~~~~~~~~------ 126 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISG---GMDFFVYPLLEGIVEKDRI----YCNE--------ADFSNEYIH------ 126 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECC---CcHHHHHHHHHhhCCcccE----Eece--------eEeeCCeeE------
Confidence 367999999999999999999999999 4578888889887543322 1110 011111111
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCC-CCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 340 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p-~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~ 340 (371)
..||+|..+.. .....- -..+++.++..++++|||||+.+|+.+|+.||+
T Consensus 127 ----------------------~~~p~~~~~~~~~~cg~~-----K~~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~-- 177 (214)
T TIGR03333 127 ----------------------IDWPHPCDGTCQNQCGCC-----KPSLIRKLSEPNDYHIVIGDSVTDVEAAKQSDL-- 177 (214)
T ss_pred ----------------------EeCCCCCccccccCCCCC-----HHHHHHHHhhcCCcEEEEeCCHHHHHHHHhCCe--
Confidence 22666655210 000000 135567777789999999999999999999999
Q ss_pred EEECC
Q 017455 341 VVMRS 345 (371)
Q Consensus 341 v~v~~ 345 (371)
++.++
T Consensus 178 ~~ar~ 182 (214)
T TIGR03333 178 CFARD 182 (214)
T ss_pred eEehH
Confidence 55544
No 71
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.51 E-value=5.3e-14 Score=119.56 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=80.4
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCC-----cHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSG-----DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 258 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~-----~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~ 258 (371)
.++||+.++|+.|+++|++++|+||+.... ...+...++++|+...+. +++. .
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~--~------------------ 82 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVL--YACP--H------------------ 82 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEE--EECC--C------------------
Confidence 389999999999999999999999943111 456778889998863322 1111 0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHc-CCCCCcEEEEeC-CHhhHHHHHHc
Q 017455 259 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYA-EKPVRNCFLIAG-SQSGVAGAQRI 336 (371)
Q Consensus 259 ~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~l-gv~p~e~I~IgD-s~~Di~aA~~a 336 (371)
..||+|++ |+.+++++ +++|++|+|||| +..|+.+|+++
T Consensus 83 -------------------------~~KP~~~~--------------~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~ 123 (132)
T TIGR01662 83 -------------------------CRKPKPGM--------------FLEALKRFNEIDPEESVYVGDQDLTDLQAAKRA 123 (132)
T ss_pred -------------------------CCCCChHH--------------HHHHHHHcCCCChhheEEEcCCCcccHHHHHHC
Confidence 12788888 99999999 599999999999 79999999999
Q ss_pred CCcEEEEC
Q 017455 337 GMPCVVMR 344 (371)
Q Consensus 337 Gm~~v~v~ 344 (371)
|+++|+++
T Consensus 124 Gi~~i~~~ 131 (132)
T TIGR01662 124 GLAFILVA 131 (132)
T ss_pred CCeEEEee
Confidence 99999985
No 72
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.50 E-value=9.8e-14 Score=123.78 Aligned_cols=105 Identities=13% Similarity=0.196 Sum_probs=85.0
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhH
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
...++||+.++|+.|+++|++++|+||... ...+..+++.+|+..++.
T Consensus 41 ~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~--~~~~~~~~~~~gl~~~~~------------------------------ 88 (170)
T TIGR01668 41 HNEAYPALRDWIEELKAAGRKLLIVSNNAG--EQRAKAVEKALGIPVLPH------------------------------ 88 (170)
T ss_pred CCCcChhHHHHHHHHHHcCCEEEEEeCCch--HHHHHHHHHHcCCEEEcC------------------------------
Confidence 356899999999999999999999999431 355556666666543210
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCcE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPC 340 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~~ 340 (371)
..||+|++ |+.+++++|+++++|+||||+. .|+.+|+++||++
T Consensus 89 ----------------------~~KP~p~~--------------~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~ 132 (170)
T TIGR01668 89 ----------------------AVKPPGCA--------------FRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYT 132 (170)
T ss_pred ----------------------CCCCChHH--------------HHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeE
Confidence 12788888 9999999999999999999998 6999999999999
Q ss_pred EEECCCCCCCcccc
Q 017455 341 VVMRSRCITTLPVS 354 (371)
Q Consensus 341 v~v~~~~~~~~~l~ 354 (371)
|++.++......+.
T Consensus 133 i~v~~g~~~~~~~~ 146 (170)
T TIGR01668 133 ILVEPLVHPDQWFI 146 (170)
T ss_pred EEEccCcCCccccc
Confidence 99998876655443
No 73
>PRK11590 hypothetical protein; Provisional
Probab=99.50 E-value=1.1e-12 Score=120.87 Aligned_cols=192 Identities=13% Similarity=0.040 Sum_probs=114.6
Q ss_pred CceEEEEecCCccccccccCcHHHHHHHH-HHcCCCCCCCChHHHHHHHHhhcCCh-HH-HH--HH-HHH-HcCCCCCCC
Q 017455 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAF-QKLGLDCANWTAPIYTDLLRKSAGDE-DR-ML--VL-FFN-RIGWPTSVP 155 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~~~~~~~~a~~~~~-~~~g~~~~~~~~~~~~~~~~~~~g~~-~~-~~--~~-~~~-~~g~~~~~~ 155 (371)
..|++|||+||||++.. ....|...+ +++|+.. .+.+....+++...... .. .. .. ++. ..|.+
T Consensus 5 ~~k~~iFD~DGTL~~~d---~~~~~~~~~~~~~g~~~--~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~~---- 75 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD---MFGSFLRYLLRRQPLNL--LLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGHS---- 75 (211)
T ss_pred cceEEEEecCCCCcccc---hHHHHHHHHHHhcchhh--HHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCCC----
Confidence 46799999999999444 457777777 7888652 33233333332211100 00 00 00 011 11221
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHH-HHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchhee
Q 017455 156 TNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFV-DDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKI 234 (371)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL-~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i 234 (371)
.+.++.+.+.+.+.|.+. ..++||+.++| +.++++|++++|+|| +++..+..+++.+|+... +.+|
T Consensus 76 ----~~~~~~~~~~f~~~~~~~-----~~~~pga~e~L~~~l~~~G~~l~IvSa---s~~~~~~~il~~l~~~~~-~~~i 142 (211)
T PRK11590 76 ----EARLQALEADFVRWFRDN-----VTAFPVVQERLTTYLLSSDADVWLITG---SPQPLVEQVYFDTPWLPR-VNLI 142 (211)
T ss_pred ----HHHHHHHHHHHHHHHHHh-----CcCCccHHHHHHHHHHhCCCEEEEEeC---CcHHHHHHHHHHcccccc-CceE
Confidence 122334444444444332 45799999999 578889999999999 558999999999996321 1122
Q ss_pred ecchhHHhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcC
Q 017455 235 VGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE 314 (371)
Q Consensus 235 ~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lg 314 (371)
-+.-++ .|+..+.|... .|. . | ...+.+.+|
T Consensus 143 ~t~l~~---~~tg~~~g~~c-~g~-------------------------------------~----K----~~~l~~~~~ 173 (211)
T PRK11590 143 ASQMQR---RYGGWVLTLRC-LGH-------------------------------------E----K----VAQLERKIG 173 (211)
T ss_pred EEEEEE---EEccEECCccC-CCh-------------------------------------H----H----HHHHHHHhC
Confidence 222122 23333333221 110 0 1 344455567
Q ss_pred CCCCcEEEEeCCHhhHHHHHHcCCcEEEECC
Q 017455 315 KPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 345 (371)
Q Consensus 315 v~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~ 345 (371)
.+.+.+.+.|||.+|+.+...+|-+.++.++
T Consensus 174 ~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~ 204 (211)
T PRK11590 174 TPLRLYSGYSDSKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CCcceEEEecCCcccHHHHHhCCCCEEECcc
Confidence 7788899999999999999999999888654
No 74
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.49 E-value=1.3e-13 Score=125.08 Aligned_cols=88 Identities=19% Similarity=0.312 Sum_probs=75.4
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc--cchheeecchhHHhhhhccccccccccCCchh
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER--ISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 260 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~--~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~ 260 (371)
.+++||+.++|+.|+++|++++++|+ .....+..+.+.+|+.+ .|.... +
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TG---D~~~~a~~~~~~lgi~~~~v~a~~~----------------------~--- 177 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTG---DNESTASAIAKQLGIFDSIVFARVI----------------------G--- 177 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEES---SEHHHHHHHHHHTTSCSEEEEESHE----------------------T---
T ss_pred CcchhhhhhhhhhhhccCcceeeeec---ccccccccccccccccccccccccc----------------------c---
Confidence 46899999999999999999999998 55888999999999955 221100 1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcC
Q 017455 261 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIG 337 (371)
Q Consensus 261 ~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aG 337 (371)
||++.+ |..+++.+++++.+|+||||+.||+.|+++||
T Consensus 178 -------------------------kP~~k~--------------~~~~i~~l~~~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 178 -------------------------KPEPKI--------------FLRIIKELQVKPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp -------------------------TTHHHH--------------HHHHHHHHTCTGGGEEEEESSGGHHHHHHHSS
T ss_pred -------------------------cccchh--------------HHHHHHHHhcCCCEEEEEccCHHHHHHHHhCc
Confidence 676666 89999999999999999999999999999997
No 75
>PRK10444 UMP phosphatase; Provisional
Probab=99.44 E-value=8.7e-13 Score=124.71 Aligned_cols=61 Identities=10% Similarity=0.173 Sum_probs=51.1
Q ss_pred HHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCCCccccc----ccccchHHHHh
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSK----TQRLADMLCRI 366 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~~~~l~~----~~~~~~~l~~~ 366 (371)
|+.+++++++++++|+||||+. +||.+|+++||++++|.+|....+.+.. ++.+++++.++
T Consensus 180 ~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 180 IRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred HHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 9999999999999999999997 7999999999999999999877666543 44555555443
No 76
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.43 E-value=1.5e-12 Score=122.17 Aligned_cols=107 Identities=8% Similarity=0.180 Sum_probs=77.8
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCC-CcHHHHHHHHHcCc--cccchheeecchhHHhhhhccccccccccCCch
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKS-GDRIARSVVEKLGS--ERISKIKIVGNEEVERSLYGQFVLGKGISSGVD 259 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~-~~~~~~~~l~~lgl--~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~ 259 (371)
..|+||+.++|+.|+++|++++++||.+.+ .+..+..+++.+|+ .++|..+ +++ +.. .
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vi-l~g--------------d~~--~-- 173 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVI-FAG--------------DKP--G-- 173 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEE-EcC--------------CCC--C--
Confidence 568999999999999999999999996422 24566677777999 8887653 222 111 0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCc
Q 017455 260 EQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP 339 (371)
Q Consensus 260 ~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~ 339 (371)
||++ ..+++.+|+ +|||||+.+|+.+|++||+.
T Consensus 174 --------------------------K~~K-----------------~~~l~~~~i----~I~IGDs~~Di~aA~~AGi~ 206 (237)
T PRK11009 174 --------------------------QYTK-----------------TQWLKKKNI----RIFYGDSDNDITAAREAGAR 206 (237)
T ss_pred --------------------------CCCH-----------------HHHHHhcCC----eEEEcCCHHHHHHHHHcCCc
Confidence 2211 113456676 89999999999999999999
Q ss_pred EEEECCCCCCC-ccccc
Q 017455 340 CVVMRSRCITT-LPVSK 355 (371)
Q Consensus 340 ~v~v~~~~~~~-~~l~~ 355 (371)
+|.+.++.... .+++.
T Consensus 207 ~I~v~~G~~~~~~~~~~ 223 (237)
T PRK11009 207 GIRILRAANSTYKPLPQ 223 (237)
T ss_pred EEEEecCCCCCCCcccc
Confidence 99998887643 34543
No 77
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.42 E-value=1.1e-12 Score=123.88 Aligned_cols=49 Identities=6% Similarity=0.182 Sum_probs=44.3
Q ss_pred HHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCCCcccc
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVS 354 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~~~~l~ 354 (371)
|+.+++++|+++++++||||+. +||.+|+++||++|+|.+|.....++.
T Consensus 184 ~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~ 233 (249)
T TIGR01457 184 MEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVA 233 (249)
T ss_pred HHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHh
Confidence 9999999999999999999997 799999999999999999876555443
No 78
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.35 E-value=1.2e-11 Score=110.34 Aligned_cols=205 Identities=12% Similarity=0.193 Sum_probs=128.4
Q ss_pred CceEEEEecCCccccccccCcHHHHHHHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHcCCCCCCCcchhHHH
Q 017455 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRIGWPTSVPTNEKKAF 162 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~ 162 (371)
..++|.||||.|++--+.+ .+..+-.|.. ++.....+..++++..+.+.+..++.
T Consensus 15 ~~~aVcFDvDSTvi~eEgI------delA~~~G~~------~~Va~~T~rAMng~~~F~eaL~~Rl~------------- 69 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEEGI------DELAAYCGVG------EAVAEVTRRAMNGEADFQEALAARLS------------- 69 (227)
T ss_pred hcCeEEEecCcchhHHhhH------HHHHHHhCch------HHHHHHHHHHhCCCCcHHHHHHHHHH-------------
Confidence 3579999999999877765 5555556664 45566666666667766666665553
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc--cchheeecchhH
Q 017455 163 VKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER--ISKIKIVGNEEV 240 (371)
Q Consensus 163 ~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~--~f~~~i~~~~~~ 240 (371)
+++-.......++......+-||+++|+..|+++|.+++++|+ ++...+..+...||+.. .+...+.-+..+
T Consensus 70 ---llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~~~~~v~liSG---GF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~G 143 (227)
T KOG1615|consen 70 ---LLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHARGTQVYLISG---GFRQLIEPVAEQLGIPKSNIYANELLFDKDG 143 (227)
T ss_pred ---HhcccHHHHHHHHhcCCCccCCCHHHHHHHHHHcCCeEEEEcC---ChHHHHHHHHHHhCCcHhhhhhheeeeccCC
Confidence 2232333333444445678999999999999999999999999 77999999999999976 555544433222
Q ss_pred HhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcE
Q 017455 241 ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNC 320 (371)
Q Consensus 241 ~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~ 320 (371)
+|..+-+-..+..+. . +.++ +....+ |.....+
T Consensus 144 ---k~~gfd~~~ptsdsg--------g-------------------------------Ka~~---i~~lrk--~~~~~~~ 176 (227)
T KOG1615|consen 144 ---KYLGFDTNEPTSDSG--------G-------------------------------KAEV---IALLRK--NYNYKTI 176 (227)
T ss_pred ---cccccccCCccccCC--------c-------------------------------cHHH---HHHHHh--CCChhee
Confidence 222221112221110 1 1122 444444 8889999
Q ss_pred EEEeCCHhhHHHHHHcCCcEEEECCCCCCCcccccccccchHHHHhhhhc
Q 017455 321 FLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLCRILKSI 370 (371)
Q Consensus 321 I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~~~l~~i 370 (371)
+||||+.+|++|..- |..++..+.- .-.+....-+.+++..+..|
T Consensus 177 ~mvGDGatDlea~~p-a~afi~~~g~----~~r~~vk~nak~~~~~f~~L 221 (227)
T KOG1615|consen 177 VMVGDGATDLEAMPP-ADAFIGFGGN----VIREGVKANAKWYVTDFYVL 221 (227)
T ss_pred EEecCCccccccCCc-hhhhhccCCc----eEcHhhHhccHHHHHHHHHH
Confidence 999999999988665 4434333211 11111222456666666544
No 79
>PLN02645 phosphoglycolate phosphatase
Probab=99.34 E-value=2.1e-12 Score=125.89 Aligned_cols=63 Identities=8% Similarity=0.012 Sum_probs=52.3
Q ss_pred HHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCCCcccc------cccccchHHHHhhh
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVS------KTQRLADMLCRILK 368 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~~~~l~------~~~~~~~~l~~~l~ 368 (371)
|+.+++++|+++++++||||+. +||.+|+++||++|+|.+|.....++. .++.+++++.++++
T Consensus 236 ~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~ 305 (311)
T PLN02645 236 MDYLANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLT 305 (311)
T ss_pred HHHHHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHH
Confidence 9999999999999999999997 899999999999999998876655442 34566666666554
No 80
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.33 E-value=3.2e-12 Score=123.31 Aligned_cols=113 Identities=13% Similarity=0.055 Sum_probs=89.7
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc-cchheeecchhHHhhhhccccccccccCCchh
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER-ISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 260 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~-~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~ 260 (371)
...++||+.++|+.|+++|++++++||. +.......++.+++.. +|+.+ ++.+.... |
T Consensus 185 ~~~~~~~~~~~l~~l~~~g~~i~i~T~r---~~~~~~~~l~~l~~~~~~f~~i-~~~~~~~~--~--------------- 243 (300)
T PHA02530 185 EDKPNPMVVELVKMYKAAGYEIIVVSGR---DGVCEEDTVEWLRQTDIWFDDL-IGRPPDMH--F--------------- 243 (300)
T ss_pred cCCCChhHHHHHHHHHhCCCEEEEEeCC---ChhhHHHHHHHHHHcCCchhhh-hCCcchhh--h---------------
Confidence 4568999999999999999999999994 4788889999999986 88764 33321110 0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCC-CCCcEEEEeCCHhhHHHHHHcCCc
Q 017455 261 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEK-PVRNCFLIAGSQSGVAGAQRIGMP 339 (371)
Q Consensus 261 ~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv-~p~e~I~IgDs~~Di~aA~~aGm~ 339 (371)
.-..+..||+|++ ++.++++++. ++++|++|||+.+|+.+|+++||+
T Consensus 244 ------------------~~~~~~~kp~p~~--------------~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~ 291 (300)
T PHA02530 244 ------------------QREQGDKRPDDVV--------------KEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLE 291 (300)
T ss_pred ------------------cccCCCCCCcHHH--------------HHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCe
Confidence 0000123778777 9999999998 689999999999999999999999
Q ss_pred EEEECCCC
Q 017455 340 CVVMRSRC 347 (371)
Q Consensus 340 ~v~v~~~~ 347 (371)
+|+|.+|.
T Consensus 292 ~i~v~~g~ 299 (300)
T PHA02530 292 CWQVAPGD 299 (300)
T ss_pred EEEecCCC
Confidence 99998763
No 81
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.29 E-value=1e-11 Score=122.69 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=81.2
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCC----CC--------CcHHHHHHHHHcCccccchheeecchhHHhhhhccccc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYG----KS--------GDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL 250 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~----~~--------~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~ 250 (371)
.+++||+.++|+.|+++|++++|+||.+ .. ....+..+++.+|+. |+.++++... .
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd~i~i~~~~----------~ 96 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FDEVLICPHF----------P 96 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--eeeEEEeCCc----------C
Confidence 5699999999999999999999999941 00 123455567777773 4443332100 0
Q ss_pred cccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhH
Q 017455 251 GKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGV 330 (371)
Q Consensus 251 g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di 330 (371)
.+.. ..+||+|++ ++.+++.++++|++++||||+.+|+
T Consensus 97 sd~~----------------------------~~rKP~p~~--------------l~~a~~~l~v~~~~svmIGDs~sDi 134 (354)
T PRK05446 97 EDNC----------------------------SCRKPKTGL--------------VEEYLAEGAIDLANSYVIGDRETDV 134 (354)
T ss_pred cccC----------------------------CCCCCCHHH--------------HHHHHHHcCCCcccEEEEcCCHHHH
Confidence 0111 134788888 9999999999999999999999999
Q ss_pred HHHHHcCCcEEEEC
Q 017455 331 AGAQRIGMPCVVMR 344 (371)
Q Consensus 331 ~aA~~aGm~~v~v~ 344 (371)
.+|+++||++|+++
T Consensus 135 ~aAk~aGi~~I~v~ 148 (354)
T PRK05446 135 QLAENMGIKGIRYA 148 (354)
T ss_pred HHHHHCCCeEEEEE
Confidence 99999999999994
No 82
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.23 E-value=3.6e-12 Score=98.29 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=57.7
Q ss_pred hccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCC-HhhHHHHHHcCCcEEEECCCCCCCcccc----cccc
Q 017455 284 MLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS-QSGVAGAQRIGMPCVVMRSRCITTLPVS----KTQR 358 (371)
Q Consensus 284 ~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs-~~Di~aA~~aGm~~v~v~~~~~~~~~l~----~~~~ 358 (371)
+.||+|.+ |+.+++++++++++|+||||+ ..||.+|+++||.+|+|.+|......+. .+++
T Consensus 2 ~gKP~p~~--------------~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~ 67 (75)
T PF13242_consen 2 CGKPSPGM--------------LEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDY 67 (75)
T ss_dssp CSTTSHHH--------------HHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSE
T ss_pred CCCCcHHH--------------HHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCE
Confidence 35899998 999999999999999999999 8899999999999999999988776654 4455
Q ss_pred cchHHHH
Q 017455 359 LADMLCR 365 (371)
Q Consensus 359 ~~~~l~~ 365 (371)
+++++.|
T Consensus 68 vv~~l~e 74 (75)
T PF13242_consen 68 VVDDLKE 74 (75)
T ss_dssp EESSGGG
T ss_pred EECCHHh
Confidence 5555543
No 83
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.22 E-value=1e-11 Score=108.27 Aligned_cols=97 Identities=21% Similarity=0.165 Sum_probs=76.9
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc-cchheeecchhHHhhhhccccccccccCCchhH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER-ISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~-~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
+.++||+.++|+.|+ ++++++|+|++ ....+..+++.+++.. +|+. |++.+++.. +
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~---~~~~~~~il~~l~~~~~~f~~-i~~~~d~~~--------------~---- 100 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAG---LRMYADPVLDLLDPKKYFGYR-RLFRDECVF--------------V---- 100 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCC---cHHHHHHHHHHhCcCCCEeee-EEECccccc--------------c----
Confidence 568999999999998 57999999995 4788999999999965 4455 344333321 1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
||+ |.++++++|++|++||+|||+..|+.+|.++|+.+-
T Consensus 101 ------------------------KP~-----------------~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 101 ------------------------KGK-----------------YVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred ------------------------CCe-----------------EeecHHHcCCChhcEEEEECCHHHhhcCccCEEEec
Confidence 443 366789999999999999999999999999998764
Q ss_pred EE
Q 017455 342 VM 343 (371)
Q Consensus 342 ~v 343 (371)
-.
T Consensus 140 ~f 141 (148)
T smart00577 140 PW 141 (148)
T ss_pred Cc
Confidence 43
No 84
>PRK08238 hypothetical protein; Validated
Probab=99.21 E-value=4.1e-10 Score=115.75 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=72.2
Q ss_pred CCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchh
Q 017455 181 KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 260 (371)
Q Consensus 181 ~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~ 260 (371)
...+++||+.++|++++++|++++|+|+ +++..++.+++++|+ |+.+ ++.+++..
T Consensus 69 ~~lp~~pga~e~L~~lk~~G~~v~LaTa---s~~~~a~~i~~~lGl---Fd~V-igsd~~~~------------------ 123 (479)
T PRK08238 69 ATLPYNEEVLDYLRAERAAGRKLVLATA---SDERLAQAVAAHLGL---FDGV-FASDGTTN------------------ 123 (479)
T ss_pred hhCCCChhHHHHHHHHHHCCCEEEEEeC---CCHHHHHHHHHHcCC---CCEE-EeCCCccc------------------
Confidence 3467899999999999999999999999 458899999999987 5553 33322211
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcE
Q 017455 261 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 340 (371)
Q Consensus 261 ~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~ 340 (371)
+||+++ .+...+.++ .++++++||+.+|+.+++.+| +.
T Consensus 124 -------------------------------~kg~~K--------~~~l~~~l~--~~~~~yvGDS~~Dlp~~~~A~-~a 161 (479)
T PRK08238 124 -------------------------------LKGAAK--------AAALVEAFG--ERGFDYAGNSAADLPVWAAAR-RA 161 (479)
T ss_pred -------------------------------cCCchH--------HHHHHHHhC--ccCeeEecCCHHHHHHHHhCC-Ce
Confidence 122222 233446665 366899999999999999999 66
Q ss_pred EEECC
Q 017455 341 VVMRS 345 (371)
Q Consensus 341 v~v~~ 345 (371)
+.|+.
T Consensus 162 v~Vn~ 166 (479)
T PRK08238 162 IVVGA 166 (479)
T ss_pred EEECC
Confidence 66653
No 85
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.21 E-value=2.1e-10 Score=109.18 Aligned_cols=177 Identities=16% Similarity=0.211 Sum_probs=109.8
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHH-cCccccchheeecchhHHh---hhh---cccccc-----
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK-LGSERISKIKIVGNEEVER---SLY---GQFVLG----- 251 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~-lgl~~~f~~~i~~~~~~~~---~~f---~~~v~g----- 251 (371)
.+.||+.++|+.|+++|++++++||+++.........+.. ++++-..+.++.|+.-... ... ..++.|
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG~~~l~ 103 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEGLK 103 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEECCcchH
Confidence 3899999999999999999999999886555645555555 6664434433322221110 000 001111
Q ss_pred --------------cc-----ccCCchhHHHHHH----HHHHhHHHHH---------------------H--HHHHHhhc
Q 017455 252 --------------KG-----ISSGVDEQLATEA----RKAVSAQKQE---------------------I--AEEVASML 285 (371)
Q Consensus 252 --------------~~-----v~~~~~~~~~~~~----~k~~~~~~~~---------------------~--~~~~~~~~ 285 (371)
+. +..|.+....-|. .+++.+-..+ | +-+.++..
T Consensus 104 ~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~~p~~~g~~pgaGai~~~~~~~tg~ 183 (269)
T COG0647 104 EELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLTVPTERGLRPGAGAIAALLEQATGR 183 (269)
T ss_pred HHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCccccCCCCCccCcHHHHHHHHHhhCC
Confidence 11 2222222222222 2221111111 2 23455566
Q ss_pred cCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCCCcccccccccchHHH
Q 017455 286 KLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLC 364 (371)
Q Consensus 286 KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~~~~l~~~~~~~~~l~ 364 (371)
+| ..+.||++.- |+.+++.++.++++++||||+. +||.+|+++||.+++|.+|....+.+.......+.+.
T Consensus 184 ~~-~~~GKP~~~i-------~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~ 255 (269)
T COG0647 184 EP-TVIGKPSPAI-------YEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVV 255 (269)
T ss_pred cc-cccCCCCHHH-------HHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchH
Confidence 66 6777777773 9999999999999999999997 5999999999999999999886666554444444444
Q ss_pred Hhhh
Q 017455 365 RILK 368 (371)
Q Consensus 365 ~~l~ 368 (371)
+++.
T Consensus 256 ~sl~ 259 (269)
T COG0647 256 DSLA 259 (269)
T ss_pred hhHH
Confidence 4443
No 86
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.21 E-value=2.6e-10 Score=108.99 Aligned_cols=118 Identities=23% Similarity=0.279 Sum_probs=82.9
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhcccccccc
Q 017455 174 LDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKG 253 (371)
Q Consensus 174 ~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~ 253 (371)
+.+.+....++++||+.+|++.|+++|++++|+|+ +....++.+++++|+.+.+.. ++++.-. +..++
T Consensus 111 i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~---G~~~~Ie~vL~~lgl~~~~~~-IvSN~L~--------f~~dG 178 (277)
T TIGR01544 111 IKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSA---GIGNVLEEVLRQAGVYHPNVK-VVSNFMD--------FDEDG 178 (277)
T ss_pred HHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeC---CcHHHHHHHHHHcCCCCcCce-EEeeeEE--------ECCCC
Confidence 34444334688999999999999999999999999 558999999999998765533 4333211 12233
Q ss_pred ccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcC--CCCCcEEEEeCCHhhHH
Q 017455 254 ISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE--KPVRNCFLIAGSQSGVA 331 (371)
Q Consensus 254 v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lg--v~p~e~I~IgDs~~Di~ 331 (371)
+..| ||.|-+-. ..+... +++.++++++ .++++||+|||+.+|+.
T Consensus 179 vltG----------------------------~~~P~i~~---~~K~~~--v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ 225 (277)
T TIGR01544 179 VLKG----------------------------FKGPLIHT---FNKNHD--VALRNTEYFNQLKDRSNIILLGDSQGDLR 225 (277)
T ss_pred eEeC----------------------------CCCCcccc---cccHHH--HHHHHHHHhCccCCcceEEEECcChhhhh
Confidence 4433 44443311 011111 2677899999 89999999999999999
Q ss_pred HHHHc
Q 017455 332 GAQRI 336 (371)
Q Consensus 332 aA~~a 336 (371)
||..+
T Consensus 226 ma~g~ 230 (277)
T TIGR01544 226 MADGV 230 (277)
T ss_pred HhcCC
Confidence 98766
No 87
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.20 E-value=8.2e-11 Score=115.17 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=77.0
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHH----cCccccchheeecchhHHhhhhccccccccccCCchh
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK----LGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 260 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~----lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~ 260 (371)
++||+.++|..|+++|++++|+|+ +....+..++++ +++.++|+.+..+
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~---n~~~~a~~~l~~~~~~~~~~~~f~~~~~~------------------------ 84 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASK---NDEDDAKKVFERRKDFILQAEDFDARSIN------------------------ 84 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcC---CCHHHHHHHHHhCccccCcHHHeeEEEEe------------------------
Confidence 588999999999999999999999 457888889998 8888888764221
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCc
Q 017455 261 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP 339 (371)
Q Consensus 261 ~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~ 339 (371)
.||.|+. ++.+++++|+.++++|||||+..|+.++++++-.
T Consensus 85 ------------------------~~pk~~~--------------i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 85 ------------------------WGPKSES--------------LRKIAKKLNLGTDSFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred ------------------------cCchHHH--------------HHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCC
Confidence 1556665 9999999999999999999999999999997654
No 88
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.18 E-value=6.7e-11 Score=103.47 Aligned_cols=95 Identities=18% Similarity=0.310 Sum_probs=82.1
Q ss_pred CCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchh
Q 017455 181 KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 260 (371)
Q Consensus 181 ~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~ 260 (371)
+....-|.+++.+.+++.+|+++.|+||. .+.-+....+++|+.-+...
T Consensus 43 d~~~~tpe~~~W~~e~k~~gi~v~vvSNn---~e~RV~~~~~~l~v~fi~~A---------------------------- 91 (175)
T COG2179 43 DNPDATPELRAWLAELKEAGIKVVVVSNN---KESRVARAAEKLGVPFIYRA---------------------------- 91 (175)
T ss_pred cCCCCCHHHHHHHHHHHhcCCEEEEEeCC---CHHHHHhhhhhcCCceeecc----------------------------
Confidence 34568899999999999999999999994 47888888999988754321
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCc
Q 017455 261 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMP 339 (371)
Q Consensus 261 ~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~ 339 (371)
.||.+.- |..|++.++++|++|+||||.. .||.+++.+||+
T Consensus 92 ------------------------~KP~~~~--------------fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~ 133 (175)
T COG2179 92 ------------------------KKPFGRA--------------FRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMR 133 (175)
T ss_pred ------------------------cCccHHH--------------HHHHHHHcCCChhHEEEEcchhhhhhhcccccCcE
Confidence 2666666 9999999999999999999996 699999999999
Q ss_pred EEEEC
Q 017455 340 CVVMR 344 (371)
Q Consensus 340 ~v~v~ 344 (371)
||+|.
T Consensus 134 tIlV~ 138 (175)
T COG2179 134 TILVE 138 (175)
T ss_pred EEEEE
Confidence 99996
No 89
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.16 E-value=6.1e-11 Score=100.91 Aligned_cols=89 Identities=8% Similarity=-0.002 Sum_probs=71.2
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcC-------ccccchheeecchhHHhhhhccccccccccC
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLG-------SERISKIKIVGNEEVERSLYGQFVLGKGISS 256 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lg-------l~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~ 256 (371)
+++||+.++|+.|+++|++++|+||++ ....+...++.++ +.++|+.++.+ +
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~--~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~---------------~---- 87 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYND--DPHVAYELLKIFEDFGIIFPLAEYFDPLTIG---------------Y---- 87 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCC--CHHHHHHHHHhccccccchhhHhhhhhhhhc---------------C----
Confidence 378999999999999999999999952 4677778888888 56666653221 1
Q ss_pred CchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcC--CCCCcEEEEeCCHhhHHHHH
Q 017455 257 GVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE--KPVRNCFLIAGSQSGVAGAQ 334 (371)
Q Consensus 257 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lg--v~p~e~I~IgDs~~Di~aA~ 334 (371)
.||+|++ |..+++++| +.|++|+||||+..|+...+
T Consensus 88 ----------------------------~~pkp~~--------------~~~a~~~lg~~~~p~~~l~igDs~~n~~~~~ 125 (128)
T TIGR01681 88 ----------------------------WLPKSPR--------------LVEIALKLNGVLKPKSILFVDDRPDNNEEVD 125 (128)
T ss_pred ----------------------------CCcHHHH--------------HHHHHHHhcCCCCcceEEEECCCHhHHHHHH
Confidence 1455555 999999999 99999999999999988765
Q ss_pred H
Q 017455 335 R 335 (371)
Q Consensus 335 ~ 335 (371)
+
T Consensus 126 ~ 126 (128)
T TIGR01681 126 Y 126 (128)
T ss_pred h
Confidence 4
No 90
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.14 E-value=9.9e-11 Score=104.47 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=73.5
Q ss_pred HHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHHHHHHHHHhH
Q 017455 193 VDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSA 272 (371)
Q Consensus 193 L~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~ 272 (371)
|..|+++|++++|+||. ....++..++.+|+.++|+..
T Consensus 43 ~~~L~~~Gi~laIiT~k---~~~~~~~~l~~lgi~~~f~~~--------------------------------------- 80 (169)
T TIGR02726 43 VIVLQLCGIDVAIITSK---KSGAVRHRAEELKIKRFHEGI--------------------------------------- 80 (169)
T ss_pred HHHHHHCCCEEEEEECC---CcHHHHHHHHHCCCcEEEecC---------------------------------------
Confidence 66788899999999994 488999999999999887531
Q ss_pred HHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 273 QKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 273 ~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
||.|+. |+.+++++|+++++|++|||+.+|+.+++.+|+..++-+
T Consensus 81 -------------kpkp~~--------------~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~n 125 (169)
T TIGR02726 81 -------------KKKTEP--------------YAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGD 125 (169)
T ss_pred -------------CCCHHH--------------HHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcC
Confidence 566666 999999999999999999999999999999999988865
No 91
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.12 E-value=1.6e-10 Score=101.42 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=72.7
Q ss_pred HHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHHHHHHHHHh
Q 017455 192 FVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVS 271 (371)
Q Consensus 192 lL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~ 271 (371)
+|+.|+++|++++|+||. +...+...++.+|+.++|+..
T Consensus 36 ~i~~Lk~~G~~i~IvTn~---~~~~~~~~l~~~gi~~~~~~~-------------------------------------- 74 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGR---KAKLVEDRCKTLGITHLYQGQ-------------------------------------- 74 (154)
T ss_pred HHHHHHHCCCEEEEEECC---CCHHHHHHHHHcCCCEEEecc--------------------------------------
Confidence 689999999999999994 467888999999999876431
Q ss_pred HHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 272 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 272 ~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
||.|+. ++.+++++|+++++|+||||+.+|+.+++.+|+. +.+.+..
T Consensus 75 --------------~~k~~~--------------~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~-~~v~~~~ 121 (154)
T TIGR01670 75 --------------SNKLIA--------------FSDILEKLALAPENVAYIGDDLIDWPVMEKVGLS-VAVADAH 121 (154)
T ss_pred --------------cchHHH--------------HHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe-EecCCcC
Confidence 344444 8999999999999999999999999999999997 6665543
No 92
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.12 E-value=2.2e-09 Score=99.11 Aligned_cols=111 Identities=14% Similarity=0.014 Sum_probs=72.7
Q ss_pred CCCCccHHHHHH-HHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhH
Q 017455 183 APLRPGVEDFVD-DAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 183 ~~~~pgv~elL~-~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
..++||+.++|+ .++++|++++|+|| +++..++.+.+.+++....+ +|-+.-++. .+..+.|... .|
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSa---s~~~~~~~ia~~~~~~~~~~-~i~t~le~~---~gg~~~g~~c-~g---- 160 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITG---SPQPLVEAVYFDSNFIHRLN-LIASQIERG---NGGWVLPLRC-LG---- 160 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcC---CcHHHHHHHHHhccccccCc-EEEEEeEEe---CCceEcCccC-CC----
Confidence 358999999996 78889999999999 55888999988866533222 122221211 1112222111 11
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
..| ...+.+.+|.+.+.+.+.|||.+|+.+...+|-+.+
T Consensus 161 -------------------------------------~~K----v~rl~~~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~ 199 (210)
T TIGR01545 161 -------------------------------------HEK----VAQLEQKIGSPLKLYSGYSDSKQDNPLLAFCEHRWR 199 (210)
T ss_pred -------------------------------------hHH----HHHHHHHhCCChhheEEecCCcccHHHHHhCCCcEE
Confidence 011 233344556677788999999999999999999988
Q ss_pred EECCC
Q 017455 342 VMRSR 346 (371)
Q Consensus 342 ~v~~~ 346 (371)
+-+++
T Consensus 200 Vnp~~ 204 (210)
T TIGR01545 200 VSKRG 204 (210)
T ss_pred ECcch
Confidence 86543
No 93
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.08 E-value=1.5e-09 Score=106.39 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=54.7
Q ss_pred cCCCCCchhHHHHHHHHHHHHHc--------CC-----CCCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCCCccc---
Q 017455 291 IDTSSPESLDKIVAALRAGAEYA--------EK-----PVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPV--- 353 (371)
Q Consensus 291 i~~p~~~~~~~~~~~~~~a~~~l--------gv-----~p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~~~~l--- 353 (371)
+.||++.. |+.+++.+ ++ ++++++||||+. +||.+|+++||.+|+|.+|.....+.
T Consensus 231 ~GKP~~~~-------~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~ 303 (321)
T TIGR01456 231 LGKPTKLT-------YDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKE 303 (321)
T ss_pred cCCCChHH-------HHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCC
Confidence 45665553 88888777 43 457999999998 79999999999999999884443332
Q ss_pred ccccccchHHHHhhhhc
Q 017455 354 SKTQRLADMLCRILKSI 370 (371)
Q Consensus 354 ~~~~~~~~~l~~~l~~i 370 (371)
..++.+++++.|.++.|
T Consensus 304 ~~p~~vv~~l~e~~~~i 320 (321)
T TIGR01456 304 CKPTLIVNDVFDAVTKI 320 (321)
T ss_pred CCCCEEECCHHHHHHHh
Confidence 13467888888887765
No 94
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.07 E-value=3.8e-10 Score=116.78 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCC---------CcHHHHHHHHHcCccccchheeecchhHHhhhhcccccccccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKS---------GDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGIS 255 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~---------~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~ 255 (371)
++|||.+.|+.|+++|++++|+||...- ....+..+++.+|+. |+.+ ++.+..
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdvi-ia~~~~--------------- 259 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVF-IAIGAG--------------- 259 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEE-EeCCCC---------------
Confidence 6899999999999999999999995420 013467788888874 5542 222111
Q ss_pred CCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcC----CCCCcEEEEeCCHhhHH
Q 017455 256 SGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE----KPVRNCFLIAGSQSGVA 331 (371)
Q Consensus 256 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lg----v~p~e~I~IgDs~~Di~ 331 (371)
..+||+|.+ ++.++++++ +++++++||||+..|++
T Consensus 260 ---------------------------~~RKP~pGm--------------~~~a~~~~~~~~~Id~~~S~~VGDaagr~~ 298 (526)
T TIGR01663 260 ---------------------------FYRKPLTGM--------------WDHLKEEANDGTEIQEDDCFFVGDAAGRPA 298 (526)
T ss_pred ---------------------------CCCCCCHHH--------------HHHHHHhcCcccCCCHHHeEEeCCcccchH
Confidence 135899988 999999985 89999999999999988
Q ss_pred HHHHcCC
Q 017455 332 GAQRIGM 338 (371)
Q Consensus 332 aA~~aGm 338 (371)
+|+++|-
T Consensus 299 ~g~~ag~ 305 (526)
T TIGR01663 299 NGKAAGK 305 (526)
T ss_pred HHHhcCC
Confidence 8777765
No 95
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.07 E-value=7.8e-10 Score=104.77 Aligned_cols=37 Identities=11% Similarity=0.130 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
++.+++++|++++++++|||+.||++|++.+|+.+++
T Consensus 204 l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~vam 240 (272)
T PRK10530 204 LTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVAM 240 (272)
T ss_pred HHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEEe
Confidence 8999999999999999999999999999999985443
No 96
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.05 E-value=4.1e-09 Score=98.61 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=85.3
Q ss_pred CCCCCccHHHHHHHH--HHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCch
Q 017455 182 DAPLRPGVEDFVDDA--YNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVD 259 (371)
Q Consensus 182 ~~~~~pgv~elL~~L--~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~ 259 (371)
.+++.||+.++++.+ ++.|+.++|+|+ +...++..+++..|+.+.|.. |+++.-.... =+.+.. ..... +.
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSD---aNs~fI~~iL~~~gl~~~f~~-I~TNpa~~~~-~G~l~v-~pyh~-h~ 141 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISD---ANSFFIETILEHHGLRDCFSE-IFTNPACFDA-DGRLRV-RPYHS-HG 141 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeC---CcHhHHHHHHHhCCCccccce-EEeCCceecC-CceEEE-eCccC-CC
Confidence 488999999999999 457999999999 458999999999999998876 3444211100 000000 00000 00
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCC-
Q 017455 260 EQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM- 338 (371)
Q Consensus 260 ~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm- 338 (371)
+. +=.+-+| +-+++..|..-...-|+..+++|||||+.+|+=.+.+++-
T Consensus 142 C~------------------------~C~~NmC------K~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~ 191 (234)
T PF06888_consen 142 CS------------------------LCPPNMC------KGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPR 191 (234)
T ss_pred CC------------------------cCCCccc------hHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCC
Confidence 00 0011122 2233222333333458889999999999999999998876
Q ss_pred cEEEECCCCCCCccc
Q 017455 339 PCVVMRSRCITTLPV 353 (371)
Q Consensus 339 ~~v~v~~~~~~~~~l 353 (371)
..|+.+.++.-...+
T Consensus 192 D~v~~R~~~~l~~~i 206 (234)
T PF06888_consen 192 DVVFPRKGYPLHKLI 206 (234)
T ss_pred CEEecCCCChHHHHH
Confidence 477777776544333
No 97
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.05 E-value=4.4e-10 Score=100.13 Aligned_cols=104 Identities=14% Similarity=0.257 Sum_probs=70.3
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc----------ccchheeecchhHHhhhhcccccc
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE----------RISKIKIVGNEEVERSLYGQFVLG 251 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~----------~~f~~~i~~~~~~~~~~f~~~v~g 251 (371)
.+.++|+|.+.|..|+.+|+++++.|-++ ....++..|+.|++. ++|+.. .|..|
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt~--~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~-------------eI~~g 107 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRTD--EPDWARELLKLLEIDDADGDGVPLIEYFDYL-------------EIYPG 107 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE--S---HHHHHHHHHHTT-C----------CCECEE-------------EESSS
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECCC--ChHHHHHHHHhcCCCccccccccchhhcchh-------------heecC
Confidence 46699999999999999999999999643 368999999999999 555432 11111
Q ss_pred ccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHH
Q 017455 252 KGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVA 331 (371)
Q Consensus 252 ~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~ 331 (371)
. | .. =|+.+.+..|++.++.+||+|-.+++.
T Consensus 108 s-----K-----------------------------------------~~---Hf~~i~~~tgI~y~eMlFFDDe~~N~~ 138 (169)
T PF12689_consen 108 S-----K-----------------------------------------TT---HFRRIHRKTGIPYEEMLFFDDESRNIE 138 (169)
T ss_dssp ------H-----------------------------------------HH---HHHHHHHHH---GGGEEEEES-HHHHH
T ss_pred c-----h-----------------------------------------HH---HHHHHHHhcCCChhHEEEecCchhcce
Confidence 1 0 01 188889999999999999999999999
Q ss_pred HHHHcCCcEEEECCCCCC
Q 017455 332 GAQRIGMPCVVMRSRCIT 349 (371)
Q Consensus 332 aA~~aGm~~v~v~~~~~~ 349 (371)
...+.|..+|.+++|-+.
T Consensus 139 ~v~~lGV~~v~v~~Glt~ 156 (169)
T PF12689_consen 139 VVSKLGVTCVLVPDGLTW 156 (169)
T ss_dssp HHHTTT-EEEE-SSS--H
T ss_pred eeEecCcEEEEeCCCCCH
Confidence 999999999999987543
No 98
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.04 E-value=2.7e-09 Score=100.05 Aligned_cols=41 Identities=12% Similarity=0.271 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCCCcE-EEEeCCH-hhHHHHHHcCCcEEEECCC
Q 017455 306 LRAGAEYAEKPVRNC-FLIAGSQ-SGVAGAQRIGMPCVVMRSR 346 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~-I~IgDs~-~Di~aA~~aGm~~v~v~~~ 346 (371)
|+.++++++++++++ +||||+. +||.+|+++||++|+|.+|
T Consensus 194 ~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 194 YRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred HHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 999999999999987 9999998 7999999999999999764
No 99
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.94 E-value=2e-09 Score=97.14 Aligned_cols=84 Identities=10% Similarity=0.104 Sum_probs=68.2
Q ss_pred HHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHHHHHHHHHh
Q 017455 192 FVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVS 271 (371)
Q Consensus 192 lL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~ 271 (371)
.|+.|+++|++++|+||. ....+..+++.+|+..+|.. .
T Consensus 56 ~i~~L~~~Gi~v~I~T~~---~~~~v~~~l~~lgl~~~f~g----~---------------------------------- 94 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGR---KSKLVEDRMTTLGITHLYQG----Q---------------------------------- 94 (183)
T ss_pred HHHHHHHCCCEEEEEeCC---CcHHHHHHHHHcCCceeecC----C----------------------------------
Confidence 456777899999999994 47888999999999877642 0
Q ss_pred HHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECC
Q 017455 272 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 345 (371)
Q Consensus 272 ~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~ 345 (371)
++.++. ++.+++++|+++++|+||||+.+|+.+|+++|+.++ +.+
T Consensus 95 --------------~~k~~~--------------l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~-v~~ 139 (183)
T PRK09484 95 --------------SNKLIA--------------FSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA-VAD 139 (183)
T ss_pred --------------CcHHHH--------------HHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe-cCC
Confidence 111222 899999999999999999999999999999999954 543
No 100
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.93 E-value=1e-09 Score=103.04 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=72.7
Q ss_pred CccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHHHH
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATE 265 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~ 265 (371)
+|++.++++.+.++|+++ |+||.. .......+..+|...+|..+ .. ..++.+.
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d---~~~~~~~~~~~~~g~~~~~i------------~~-~g~~~~~---------- 192 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPD---RGINQHGIYRYGAGYYAELI------------KQ-LGGKVIY---------- 192 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCC---EeccCCCceEecccHHHHHH------------HH-hCCcEec----------
Confidence 789999999998899997 889954 33333344455555444321 00 1122211
Q ss_pred HHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCC-CCcEEEEeCC-HhhHHHHHHcCCcEEEE
Q 017455 266 ARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKP-VRNCFLIAGS-QSGVAGAQRIGMPCVVM 343 (371)
Q Consensus 266 ~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~-p~e~I~IgDs-~~Di~aA~~aGm~~v~v 343 (371)
..||+|.+ |+.+++++|+. +++|+||||+ .+||.+|+++||++++|
T Consensus 193 ------------------~gKP~~~~--------------~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v 240 (242)
T TIGR01459 193 ------------------SGKPYPAI--------------FHKALKECSNIPKNRMLMVGDSFYTDILGANRLGIDTALV 240 (242)
T ss_pred ------------------CCCCCHHH--------------HHHHHHHcCCCCcccEEEECCCcHHHHHHHHHCCCeEEEE
Confidence 23777777 99999999975 6799999999 59999999999999998
Q ss_pred CC
Q 017455 344 RS 345 (371)
Q Consensus 344 ~~ 345 (371)
.+
T Consensus 241 ~t 242 (242)
T TIGR01459 241 LT 242 (242)
T ss_pred eC
Confidence 63
No 101
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.82 E-value=3.8e-08 Score=93.93 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=39.4
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccc
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f 230 (371)
..++.||+.++|+.|+++|++++++||........+...+.++|+...+
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~ 164 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQAD 164 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCC
Confidence 4668999999999999999999999997643345556778888887543
No 102
>PTZ00445 p36-lilke protein; Provisional
Probab=98.81 E-value=2e-08 Score=91.71 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=46.4
Q ss_pred hhccCccccCCCCCchhHHHHHHH--HHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCC
Q 017455 283 SMLKLSVDIDTSSPESLDKIVAAL--RAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR 346 (371)
Q Consensus 283 ~~~KP~p~i~~p~~~~~~~~~~~~--~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~ 346 (371)
++.||+|.+ | .| +.+++++|++|++|+||+|...|+++|+++||+++.+.++
T Consensus 154 gl~KPdp~i---------K---~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 154 GLDAPMPLD---------K---SYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred cccCCCccc---------h---HHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 466888888 1 16 9999999999999999999999999999999999999865
No 103
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.80 E-value=3.2e-08 Score=97.46 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=85.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHc-C-------ccccchheeecchhHHhhhhcc------c
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL-G-------SERISKIKIVGNEEVERSLYGQ------F 248 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~l-g-------l~~~f~~~i~~~~~~~~~~f~~------~ 248 (371)
+.+.||+.++|+.|+++|++++|+|| +....+..+++.+ | +.++|+.+|.+..-= .+|.. +
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTN---S~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP--~FF~~~~pf~~v 257 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTN---SDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKP--GFFTEGRPFRQV 257 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeC---CCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCC--cccCCCCceEEE
Confidence 55799999999999999999999999 5588999999996 7 899999876654311 12221 1
Q ss_pred cccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCH-
Q 017455 249 VLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ- 327 (371)
Q Consensus 249 v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~- 327 (371)
.+.++..+... +.+ .+|- .+|. .-. +....+.+|+.+++++||||+.
T Consensus 258 ~~~~g~~~~~~---------------------~~~-l~~g-~vY~-gGn--------~~~~~~~l~~~~~~vlYvGD~i~ 305 (343)
T TIGR02244 258 DVETGSLKWGE---------------------VDG-LEPG-KVYS-GGS--------LKQFHELLKWRGKEVLYFGDHIY 305 (343)
T ss_pred eCCCCcccCCc---------------------ccc-ccCC-CeEe-CCC--------HHHHHHHHCCCCCcEEEECCcch
Confidence 11111100000 000 0110 1111 011 5777899999999999999997
Q ss_pred hhHHHHH-HcCCcEEEEC
Q 017455 328 SGVAGAQ-RIGMPCVVMR 344 (371)
Q Consensus 328 ~Di~aA~-~aGm~~v~v~ 344 (371)
.||.+++ .+||.+|+|-
T Consensus 306 ~Di~~~kk~~Gw~TvlI~ 323 (343)
T TIGR02244 306 GDLLRSKKKRGWRTAAII 323 (343)
T ss_pred HHHHhhHHhcCcEEEEEc
Confidence 5999998 9999999986
No 104
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=98.79 E-value=2.4e-07 Score=82.26 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=72.6
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhH
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
..+++|++.+.|++.+++|++++|.|.++ -.....++ |-.+.-|. .+.|..+. ++..|+
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGS---V~AQkL~F---ghs~agdL---------~~lfsGyf---DttiG~--- 159 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGS---VKAQKLFF---GHSDAGDL---------NSLFSGYF---DTTIGK--- 159 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCC---chhHHHhh---cccccccH---------Hhhhccee---eccccc---
Confidence 46799999999999999999999999864 33222222 21111110 11121111 112221
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
|-.-.- |..++...|++|.+++|+.|.+..+.||+.+||.++
T Consensus 160 ------------------------KrE~~S--------------Y~kIa~~iGl~p~eilFLSDn~~EL~AA~~vGl~t~ 201 (229)
T COG4229 160 ------------------------KRESQS--------------YAKIAGDIGLPPAEILFLSDNPEELKAAAGVGLATG 201 (229)
T ss_pred ------------------------cccchh--------------HHHHHHhcCCCchheEEecCCHHHHHHHHhcchhee
Confidence 111111 899999999999999999999999999999999999
Q ss_pred EECCCC
Q 017455 342 VMRSRC 347 (371)
Q Consensus 342 ~v~~~~ 347 (371)
++..+.
T Consensus 202 l~~R~g 207 (229)
T COG4229 202 LAVRPG 207 (229)
T ss_pred eeecCC
Confidence 986543
No 105
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.79 E-value=8.2e-08 Score=91.55 Aligned_cols=83 Identities=10% Similarity=0.038 Sum_probs=62.3
Q ss_pred HHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHh-hHHHHHHcCCcEEEECCCCCCCcccccc-
Q 017455 279 EEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQS-GVAGAQRIGMPCVVMRSRCITTLPVSKT- 356 (371)
Q Consensus 279 ~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~-Di~aA~~aGm~~v~v~~~~~~~~~l~~~- 356 (371)
.+.++.++| --+.||++.- ++...++++++|++|+||||+.+ ||.-+++.|+++++|-+|.+..++....
T Consensus 211 v~~~t~R~P-~v~GKP~~~m-------~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~ 282 (306)
T KOG2882|consen 211 VKFATGRQP-IVLGKPSTFM-------FEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQ 282 (306)
T ss_pred HHHHhcCCC-eecCCCCHHH-------HHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcc
Confidence 344556666 4455665552 89999999999999999999986 9999999999999999998866655433
Q ss_pred ---cccchHHHHhhhh
Q 017455 357 ---QRLADMLCRILKS 369 (371)
Q Consensus 357 ---~~~~~~l~~~l~~ 369 (371)
..++|.+.+.+..
T Consensus 283 ~~~~~~PDyy~~~l~d 298 (306)
T KOG2882|consen 283 GDNKMVPDYYADSLGD 298 (306)
T ss_pred cccCCCCchHHhhHHH
Confidence 2346666665543
No 106
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.77 E-value=3.5e-08 Score=88.65 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=77.9
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCC---------Cc---HHHHHHHHHcCccccchheeecchhHHhhhhcccccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKS---------GD---RIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLG 251 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~---------~~---~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g 251 (371)
.+.||+.+.+..|++.|++++++||-+.- +. ..+...++..|. .|+.+.+ +...
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv--~id~i~~-Cph~----------- 96 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGV--KIDGILY-CPHH----------- 96 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCC--ccceEEE-CCCC-----------
Confidence 37899999999999999999999993310 00 223334444443 1222111 1000
Q ss_pred ccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHH
Q 017455 252 KGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVA 331 (371)
Q Consensus 252 ~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~ 331 (371)
.. +.-.++||.|.+ ++.+++++++++++.++|||...|++
T Consensus 97 p~--------------------------~~c~cRKP~~gm--------------~~~~~~~~~iD~~~s~~VGD~~~Dlq 136 (181)
T COG0241 97 PE--------------------------DNCDCRKPKPGM--------------LLSALKEYNIDLSRSYVVGDRLTDLQ 136 (181)
T ss_pred CC--------------------------CCCcccCCChHH--------------HHHHHHHhCCCccceEEecCcHHHHH
Confidence 00 001267999999 99999999999999999999999999
Q ss_pred HHHHcCCcEEEECCCC
Q 017455 332 GAQRIGMPCVVMRSRC 347 (371)
Q Consensus 332 aA~~aGm~~v~v~~~~ 347 (371)
+|.++|++.+.+.++.
T Consensus 137 ~a~n~gi~~~~~~~~~ 152 (181)
T COG0241 137 AAENAGIKGVLVLTGI 152 (181)
T ss_pred HHHHCCCCceEEEcCc
Confidence 9999999988876553
No 107
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.74 E-value=2.3e-08 Score=89.35 Aligned_cols=40 Identities=23% Similarity=0.536 Sum_probs=36.0
Q ss_pred ccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 187 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 187 pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
|++.++|+.++++|++++|+|+ ++...+..+++.+|+...
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~---~~~~~i~~~~~~~~i~~~ 131 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSG---SPDEIIEPIAERLGIDDD 131 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEE---EEHHHHHHHHHHTTSSEG
T ss_pred hhHHHHHHHHHHCCCEEEEECC---CcHHHHHHHHHHcCCCce
Confidence 6666999999999999999999 668999999999999864
No 108
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.73 E-value=8.2e-08 Score=86.97 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=104.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchhe-------------------eecchhHHhhhh
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIK-------------------IVGNEEVERSLY 245 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~-------------------i~~~~~~~~~~f 245 (371)
+.||+.+.++.||..+.+|-.+||.++.....+...+.++|.+---+.+ ++.. +....-|
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~-d~a~~dF 102 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVD-DDALEDF 102 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEc-ccchhhC
Confidence 7899999999999999999999998877777778888888864111111 1111 1122235
Q ss_pred cccccccc--ccCCchhH-----HHHHH---------HHHHhHHHHH---------------HHHHHHh-------hccC
Q 017455 246 GQFVLGKG--ISSGVDEQ-----LATEA---------RKAVSAQKQE---------------IAEEVAS-------MLKL 287 (371)
Q Consensus 246 ~~~v~g~~--v~~~~~~~-----~~~~~---------~k~~~~~~~~---------------~~~~~~~-------~~KP 287 (371)
++|-+.+. |..|.... .-+.+ .+.++--|.+ ++-..-+ ..||
T Consensus 103 ~gidTs~pn~VViglape~F~y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP 182 (262)
T KOG3040|consen 103 DGIDTSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKP 182 (262)
T ss_pred CCccCCCCCeEEEecCcccccHHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCC
Confidence 55544311 12221110 00000 0111111111 1111111 4577
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHh-hHHHHHHcCCcEEEECCCCCCCccccc----ccccchH
Q 017455 288 SVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQS-GVAGAQRIGMPCVVMRSRCITTLPVSK----TQRLADM 362 (371)
Q Consensus 288 ~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~-Di~aA~~aGm~~v~v~~~~~~~~~l~~----~~~~~~~ 362 (371)
+|.. |+.+++.+|++|++++||||-.+ |+-+|++.||+.|.|++|-....+..+ ++..+++
T Consensus 183 ~~~f--------------Fe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~ 248 (262)
T KOG3040|consen 183 SPFF--------------FESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADN 248 (262)
T ss_pred CHHH--------------HHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhh
Confidence 7777 99999999999999999999886 899999999999999987554433332 3345666
Q ss_pred HHHhhhh
Q 017455 363 LCRILKS 369 (371)
Q Consensus 363 l~~~l~~ 369 (371)
+.+..+-
T Consensus 249 f~~AVd~ 255 (262)
T KOG3040|consen 249 FADAVDL 255 (262)
T ss_pred HHHHHHH
Confidence 6555543
No 109
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.70 E-value=4e-07 Score=83.21 Aligned_cols=132 Identities=12% Similarity=0.101 Sum_probs=79.5
Q ss_pred CCCCCccHHHHHHHHHHCCC-cEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchh
Q 017455 182 DAPLRPGVEDFVDDAYNEGI-PLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 260 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi-~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~ 260 (371)
.+|+.||+.++|+.+++.|. -+.|+|.. ..+++..+++.+|+.++|.. |.++.......=...+..... .+.+
T Consensus 82 ~iP~~Pgmv~lik~~ak~g~~eliIVSDa---NsfFIe~~Lea~~~~d~F~~-IfTNPa~~da~G~L~v~pyH~--~hsC 155 (256)
T KOG3120|consen 82 SIPIVPGMVRLIKSAAKLGCFELIIVSDA---NSFFIEEILEAAGIHDLFSE-IFTNPACVDASGRLLVRPYHT--QHSC 155 (256)
T ss_pred cCCCCccHHHHHHHHHhCCCceEEEEecC---chhHHHHHHHHccHHHHHHH-HhcCCcccCCCCcEEeecCCC--CCcc
Confidence 48899999999999999985 99999994 48999999999999999985 444322211000011111111 0000
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHH-HHcCCc
Q 017455 261 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGA-QRIGMP 339 (371)
Q Consensus 261 ~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA-~~aGm~ 339 (371)
-+. .+-+| +-.|+.-|..-..+-|+..++.|||||+.+|+=.- +..+..
T Consensus 156 ~~C------------------------PsNmC------Kg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D 205 (256)
T KOG3120|consen 156 NLC------------------------PSNMC------KGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACD 205 (256)
T ss_pred CcC------------------------chhhh------hhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCc
Confidence 000 00001 11121112222334578889999999999997544 344667
Q ss_pred EEEECCCCCC
Q 017455 340 CVVMRSRCIT 349 (371)
Q Consensus 340 ~v~v~~~~~~ 349 (371)
+++.+.++.-
T Consensus 206 ~ampRkgfpl 215 (256)
T KOG3120|consen 206 VAMPRKGFPL 215 (256)
T ss_pred eecccCCCch
Confidence 7777766653
No 110
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.70 E-value=5.2e-08 Score=90.07 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 305 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
+++.+++++|++++++++|||+.||+.|++.+|+.+++-+
T Consensus 161 al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~N 200 (230)
T PRK01158 161 GLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVAN 200 (230)
T ss_pred HHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecC
Confidence 3899999999999999999999999999999999876643
No 111
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.65 E-value=6.7e-08 Score=101.10 Aligned_cols=111 Identities=12% Similarity=0.156 Sum_probs=79.8
Q ss_pred CCCCccHHHHHHHHHHCCC-cEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhH
Q 017455 183 APLRPGVEDFVDDAYNEGI-PLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi-~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
.+++||+.++|+.|+++|+ +++++|| .+...+..+++++|++++|....
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTg---d~~~~a~~i~~~lgi~~~f~~~~--------------------------- 410 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTG---DRRAVAERVARELGIDEVHAELL--------------------------- 410 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcC---CCHHHHHHHHHHcCChhhhhccC---------------------------
Confidence 5689999999999999999 9999999 55899999999999988765320
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
| .+ -...+++++...++++||||+.+|+.+++++|+
T Consensus 411 -------------------------p-------~~---------K~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~v--- 446 (536)
T TIGR01512 411 -------------------------P-------ED---------KLEIVKELREKYGPVAMVGDGINDAPALAAADV--- 446 (536)
T ss_pred -------------------------c-------HH---------HHHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCE---
Confidence 1 00 022355566667899999999999999999996
Q ss_pred EECCC-CCCCcccccccccc--hHHHHhh
Q 017455 342 VMRSR-CITTLPVSKTQRLA--DMLCRIL 367 (371)
Q Consensus 342 ~v~~~-~~~~~~l~~~~~~~--~~l~~~l 367 (371)
.+..+ .........++.++ +++.++.
T Consensus 447 gia~g~~~~~~~~~~ad~vl~~~~l~~l~ 475 (536)
T TIGR01512 447 GIAMGASGSDVAIETADVVLLNDDLSRLP 475 (536)
T ss_pred EEEeCCCccHHHHHhCCEEEECCCHHHHH
Confidence 33333 22222233455554 4555444
No 112
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.64 E-value=3.6e-08 Score=90.71 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
++.+++++|++++++++|||+.||+.|++.+|+.+++-+
T Consensus 154 i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~N 192 (225)
T TIGR01482 154 VKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVAN 192 (225)
T ss_pred HHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEEcCC
Confidence 889999999999999999999999999999999766643
No 113
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.61 E-value=1.1e-07 Score=90.93 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCC-CcEEEEeCCHhhHHHHHHcCCcEEEECC
Q 017455 306 LRAGAEYAEKPV-RNCFLIAGSQSGVAGAQRIGMPCVVMRS 345 (371)
Q Consensus 306 ~~~a~~~lgv~p-~e~I~IgDs~~Di~aA~~aGm~~v~v~~ 345 (371)
++.+++++|+++ +++++|||+.||+.|++.+|+.+++-+.
T Consensus 195 l~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA 235 (273)
T PRK00192 195 VRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGP 235 (273)
T ss_pred HHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCC
Confidence 888899999999 9999999999999999999998888653
No 114
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.61 E-value=6.2e-09 Score=95.70 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
++.+++++|++++++++|||+.||+.|++.+|+.+++-+
T Consensus 152 i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~vam~n 190 (215)
T TIGR01487 152 VEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAVAN 190 (215)
T ss_pred HHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEEcCC
Confidence 899999999999999999999999999999999877754
No 115
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.59 E-value=8.3e-08 Score=100.81 Aligned_cols=47 Identities=26% Similarity=0.439 Sum_probs=42.4
Q ss_pred CCCCccHHHHHHHHHHCC-CcEEEEcCCCCCCcHHHHHHHHHcCccccchh
Q 017455 183 APLRPGVEDFVDDAYNEG-IPLIVLTAYGKSGDRIARSVVEKLGSERISKI 232 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~G-i~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~ 232 (371)
.+++||+.++|+.|+++| ++++++|| .....++.+++++|++++|..
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTg---d~~~~a~~i~~~lgi~~~f~~ 430 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTG---DNRSAAEAVAAELGIDEVHAE 430 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeC---CCHHHHHHHHHHhCCCeeecc
Confidence 569999999999999999 99999999 558889999999999887753
No 116
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=6.7e-07 Score=79.66 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=71.5
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcC-ccccchheeecchhHHhhhhcc-ccccccccCCch
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLG-SERISKIKIVGNEEVERSLYGQ-FVLGKGISSGVD 259 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lg-l~~~f~~~i~~~~~~~~~~f~~-~v~g~~v~~~~~ 259 (371)
.+.+.||.+++++.+++++++++|+|+ +.+.++..++++++ -++.-..-|++++.....--.. ++-.++-..|+
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSs---Gm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~- 146 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSS---GMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGH- 146 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeC---CCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCC-
Confidence 367999999999999999999999999 45889999999875 3444444456554432211001 11111122222
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCc
Q 017455 260 EQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP 339 (371)
Q Consensus 260 ~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~ 339 (371)
+ .+.+ ...+.-.++..+|+||+.+|+.||+....-
T Consensus 147 --------------------------------d------K~~v-------I~~l~e~~e~~fy~GDsvsDlsaaklsDll 181 (220)
T COG4359 147 --------------------------------D------KSSV-------IHELSEPNESIFYCGDSVSDLSAAKLSDLL 181 (220)
T ss_pred --------------------------------C------cchh-------HHHhhcCCceEEEecCCcccccHhhhhhhH
Confidence 1 1122 344455677799999999999999987653
No 117
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.56 E-value=2.7e-08 Score=94.41 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 305 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
|++..++++|++++++++|||+.||++|.+.+|..+++=+
T Consensus 200 al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 239 (270)
T PRK10513 200 GVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGN 239 (270)
T ss_pred HHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecC
Confidence 5899999999999999999999999999999999776644
No 118
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.55 E-value=2.5e-08 Score=95.02 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 305 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
|++..++++|+++++++.|||+.||++|.+.+|..+++-+
T Consensus 192 al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 231 (272)
T PRK15126 192 ALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGN 231 (272)
T ss_pred HHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccC
Confidence 5899999999999999999999999999999998666643
No 119
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.51 E-value=6.7e-07 Score=84.00 Aligned_cols=93 Identities=9% Similarity=0.144 Sum_probs=67.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc-cchheeecchhHHhhhhccccccccccCCchhH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER-ISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~-~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
..++||+.++|+.|+++|++++++||+.+.. ......++.+|+.. +|+.+ +++.+....
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~-~~~~~~L~~~gl~~~~~~~I-i~s~~~~~~------------------ 82 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRNI-FSLHKTLKSLGINADLPEMI-ISSGEIAVQ------------------ 82 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCCh-HHHHHHHHHCCCCccccceE-EccHHHHHH------------------
Confidence 4589999999999999999999999965322 22236789999987 88874 444332110
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCC
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 338 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm 338 (371)
.+..+++++|++++++++|||+..|+.....+|.
T Consensus 83 -------------------------------------------~l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 83 -------------------------------------------MILESKKRFDIRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred -------------------------------------------HHHhhhhhccCCCceEEEeCCcccchhhhcCCCc
Confidence 0555667778888888888888888777665554
No 120
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.48 E-value=4.1e-07 Score=87.27 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeec
Q 017455 187 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVG 236 (371)
Q Consensus 187 pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~ 236 (371)
||+.++|++|+++|++++|+|++. ...+...++.+|+..+|+.++.+
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~---Re~v~~~L~~lGLd~YFdvIIs~ 195 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGD---RDHVVESMRKVKLDRYFDIIISG 195 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC---HHHHHHHHHHcCCCcccCEEEEC
Confidence 889999999999999999999954 77888999999999999875433
No 121
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.47 E-value=8.8e-08 Score=84.85 Aligned_cols=116 Identities=14% Similarity=0.116 Sum_probs=85.8
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc-cchheeecchhHHhhhhccccccccccCCchhH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER-ISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~-~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
+..|||+.+||+.|.+. +.++|.|++ ...+++.+++.+++.. +|..++... ....
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~---~~~yA~~il~~ldp~~~~f~~~l~r~-~~~~------------------- 96 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTAS---LEEYADPVLDILDRGGKVISRRLYRE-SCVF------------------- 96 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCC---cHHHHHHHHHHHCcCCCEEeEEEEcc-ccEE-------------------
Confidence 55899999999999987 999999995 4899999999999875 777644321 1100
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
.||. |.+.++.+|.+++++|+|||+..++.++..+|+++.
T Consensus 97 -----------------------~~~~-----------------~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~ 136 (162)
T TIGR02251 97 -----------------------TNGK-----------------YVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIK 136 (162)
T ss_pred -----------------------eCCC-----------------EEeEchhcCCChhhEEEEeCChhhhccCccCEeecC
Confidence 0111 345578889999999999999999999999999877
Q ss_pred EECCCCCCCcccccccccchHHHHhhhhc
Q 017455 342 VMRSRCITTLPVSKTQRLADMLCRILKSI 370 (371)
Q Consensus 342 ~v~~~~~~~~~l~~~~~~~~~l~~~l~~i 370 (371)
..... . .+..+-.+.+.|+.|
T Consensus 137 ~f~~~-~-------~D~~L~~l~~~L~~l 157 (162)
T TIGR02251 137 SWFGD-P-------NDTELLNLIPFLEGL 157 (162)
T ss_pred CCCCC-C-------CHHHHHHHHHHHHHH
Confidence 76521 2 222345566666655
No 122
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.46 E-value=9.1e-07 Score=81.47 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
++.+++++|++++++++|||+.||+.|.+.+|..+++
T Consensus 184 l~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 184 ANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred HHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 7899999999999999999999999999999987664
No 123
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.44 E-value=9.9e-08 Score=90.38 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 305 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
|++..++++|++++++++|||+.||++|.+.+|..+++=+
T Consensus 193 al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~N 232 (264)
T COG0561 193 ALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGN 232 (264)
T ss_pred HHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccC
Confidence 4899999999999999999999999999999999887754
No 124
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.41 E-value=5e-07 Score=95.08 Aligned_cols=42 Identities=26% Similarity=0.510 Sum_probs=38.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
.+++||+.++|+.|+++|++++++|+ +....++.+.+.+|++
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSg---d~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTG---DNRKTAKAVAKELGIN 445 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcC---CCHHHHHHHHHHcCCc
Confidence 46899999999999999999999999 5588999999999996
No 125
>PRK10976 putative hydrolase; Provisional
Probab=98.40 E-value=2.3e-07 Score=87.93 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 305 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
|++..++++|++++++++|||+.||++|.+.+|..+++-+
T Consensus 194 al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~N 233 (266)
T PRK10976 194 ALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGN 233 (266)
T ss_pred HHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecC
Confidence 5899999999999999999999999999999999776654
No 126
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.39 E-value=5.9e-07 Score=85.73 Aligned_cols=39 Identities=8% Similarity=-0.057 Sum_probs=36.2
Q ss_pred HHHHHHHHcCC---CCCcEEEEeCCHhhHHHHHHcCCcEEEE
Q 017455 305 ALRAGAEYAEK---PVRNCFLIAGSQSGVAGAQRIGMPCVVM 343 (371)
Q Consensus 305 ~~~~a~~~lgv---~p~e~I~IgDs~~Di~aA~~aGm~~v~v 343 (371)
|++..++++|+ ++++++.|||+.||++|.+.+|..+++-
T Consensus 191 al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~ 232 (271)
T PRK03669 191 AANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVK 232 (271)
T ss_pred HHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEec
Confidence 48999999999 9999999999999999999999877775
No 127
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.30 E-value=1.5e-06 Score=95.56 Aligned_cols=87 Identities=11% Similarity=0.193 Sum_probs=69.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
-+++||+.+.|+.|+++|++++++|+ .....++.+.+.+|++++|....
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tg---d~~~~a~~ia~~lgi~~~~~~~~---------------------------- 697 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTG---DNPTTANAIAKEAGIDEVIAGVL---------------------------- 697 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCCCEEEeCCC----------------------------
Confidence 36899999999999999999999999 45788899999999987654310
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 340 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~ 340 (371)
| +. -..+++.++..+++++||||+.||+.+++++|+..
T Consensus 698 -------------------------------p--~~-------K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgi 735 (834)
T PRK10671 698 -------------------------------P--DG-------KAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGI 735 (834)
T ss_pred -------------------------------H--HH-------HHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeE
Confidence 0 00 12245566777889999999999999999999943
No 128
>PLN02887 hydrolase family protein
Probab=98.26 E-value=5.2e-06 Score=87.37 Aligned_cols=40 Identities=5% Similarity=0.006 Sum_probs=36.4
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 305 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
|++..++++|++++++++|||+.||++|.+.+|..+++-+
T Consensus 511 ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgN 550 (580)
T PLN02887 511 GVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSN 550 (580)
T ss_pred HHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCC
Confidence 4899999999999999999999999999999999766644
No 129
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.18 E-value=1.1e-05 Score=71.87 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=70.7
Q ss_pred CCCccHHHHHHHHHHCCCc--EEEEcCCCCC----CcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCC
Q 017455 184 PLRPGVEDFVDDAYNEGIP--LIVLTAYGKS----GDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSG 257 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~--v~IvTn~~~~----~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~ 257 (371)
.+.|.+.+.++++++.+.. +.|+||+..+ ....++.+.+.+|+.-+.-.
T Consensus 59 ~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~------------------------- 113 (168)
T PF09419_consen 59 EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHR------------------------- 113 (168)
T ss_pred cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeC-------------------------
Confidence 3678888889999998764 9999996311 14556777778886521100
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCC-----CCCcEEEEeCCH-hhHH
Q 017455 258 VDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEK-----PVRNCFLIAGSQ-SGVA 331 (371)
Q Consensus 258 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv-----~p~e~I~IgDs~-~Di~ 331 (371)
..|| .- +..+++.++. +|+|+++|||-. .||.
T Consensus 114 --------------------------~kKP--~~--------------~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl 151 (168)
T PF09419_consen 114 --------------------------AKKP--GC--------------FREILKYFKCQKVVTSPSEIAVIGDRLFTDVL 151 (168)
T ss_pred --------------------------CCCC--cc--------------HHHHHHHHhhccCCCCchhEEEEcchHHHHHH
Confidence 1255 22 5666777654 499999999997 6999
Q ss_pred HHHHcCCcEEEECCCC
Q 017455 332 GAQRIGMPCVVMRSRC 347 (371)
Q Consensus 332 aA~~aGm~~v~v~~~~ 347 (371)
+|.+.|+.+|++.+|-
T Consensus 152 ~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 152 MGNRMGSYTILVTDGV 167 (168)
T ss_pred HhhccCceEEEEecCc
Confidence 9999999999998763
No 130
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.16 E-value=2.2e-05 Score=74.51 Aligned_cols=120 Identities=16% Similarity=0.254 Sum_probs=83.3
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc--cc-chhe-------eecchhHHhhhhccccccc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE--RI-SKIK-------IVGNEEVERSLYGQFVLGK 252 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~--~~-f~~~-------i~~~~~~~~~~f~~~v~g~ 252 (371)
...-+.+.++|+.|+++|+++..+|....+......+.|+++|++ .. |... ...........+.++....
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 447889999999999999999999998766677777888889985 22 1100 0011111122233444444
Q ss_pred cccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHH
Q 017455 253 GISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAG 332 (371)
Q Consensus 253 ~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~a 332 (371)
+..+|. ++...+.++|..|+.+|||+|+..++..
T Consensus 160 ~~~KG~----------------------------------------------~L~~fL~~~~~~pk~IIfIDD~~~nl~s 193 (252)
T PF11019_consen 160 GQDKGE----------------------------------------------VLKYFLDKINQSPKKIIFIDDNKENLKS 193 (252)
T ss_pred CCccHH----------------------------------------------HHHHHHHHcCCCCCeEEEEeCCHHHHHH
Confidence 444431 3899999999999999999999987654
Q ss_pred ----HHHcCCcEEEECCCCC
Q 017455 333 ----AQRIGMPCVVMRSRCI 348 (371)
Q Consensus 333 ----A~~aGm~~v~v~~~~~ 348 (371)
++..|+..+++.....
T Consensus 194 v~~a~k~~~I~f~G~~Yt~~ 213 (252)
T PF11019_consen 194 VEKACKKSGIDFIGFHYTGA 213 (252)
T ss_pred HHHHHhhCCCcEEEEEEcch
Confidence 4556999998875543
No 131
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.16 E-value=1.3e-05 Score=75.59 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEE
Q 017455 305 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVM 343 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v 343 (371)
+++.+++.+|++++++++|||+.||+.|++.+|+.+++-
T Consensus 192 ~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~ 230 (256)
T TIGR00099 192 ALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMG 230 (256)
T ss_pred HHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEec
Confidence 489999999999999999999999999999999987764
No 132
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.16 E-value=3e-06 Score=79.84 Aligned_cols=42 Identities=7% Similarity=-0.045 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
++.+++.+|+++++|++|||+.||+.|++.+|...|.+.+..
T Consensus 172 l~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~ 213 (249)
T TIGR01485 172 LQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQ 213 (249)
T ss_pred HHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCH
Confidence 899999999999999999999999999999888888887653
No 133
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.10 E-value=6.6e-06 Score=74.50 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=25.3
Q ss_pred EEEeCCHhhHHHHHHcCCcEEEECCCCCCCcc
Q 017455 321 FLIAGSQSGVAGAQRIGMPCVVMRSRCITTLP 352 (371)
Q Consensus 321 I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~ 352 (371)
++|+|+..++..+...|+++|++..+++....
T Consensus 139 vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~ 170 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAGIPVILFDQPYNRDES 170 (191)
T ss_dssp EEEESSSHHHSS-SSESSEEEEE--GGGTT--
T ss_pred EEecCChHHHHhccCCCceEEEEcCCCCCCCC
Confidence 89999999999999999999999988876554
No 134
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.10 E-value=7.9e-06 Score=72.21 Aligned_cols=98 Identities=15% Similarity=0.235 Sum_probs=64.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCc-----------HHHHHHHHHcCccccchheeecchhHHhhhhcccccccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGD-----------RIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKG 253 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~-----------~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~ 253 (371)
..|+|.+.|.+|.+.|++++|+||-..-.. ..+..+++.+++.-. + +... ..+
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~--~-~~a~-------------~~d 93 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQ--V-YAAP-------------HKD 93 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EE--E-EECG-------------CSS
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceE--E-EecC-------------CCC
Confidence 456899999999999999999999542111 233444555554411 0 1111 111
Q ss_pred ccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCC----CCCcEEEEeCC---
Q 017455 254 ISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEK----PVRNCFLIAGS--- 326 (371)
Q Consensus 254 v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv----~p~e~I~IgDs--- 326 (371)
..+||.+.+ ++.+++.++. +.++++||||+
T Consensus 94 -----------------------------~~RKP~~GM--------------~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 94 -----------------------------PCRKPNPGM--------------WEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp -----------------------------TTSTTSSHH--------------HHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred -----------------------------CCCCCchhH--------------HHHHHHhccccccccccceEEEeccCCC
Confidence 167999999 9999999874 89999999996
Q ss_pred --------HhhHHHHHHcCCcEE
Q 017455 327 --------QSGVAGAQRIGMPCV 341 (371)
Q Consensus 327 --------~~Di~aA~~aGm~~v 341 (371)
..|..-|.++|++..
T Consensus 131 ~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 131 SKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp TB-S--S--HHHHHHHHHT--EE
T ss_pred CCcccccChhHHHHHHHcCCccc
Confidence 679999999999854
No 135
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.06 E-value=1e-05 Score=77.83 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecch
Q 017455 187 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNE 238 (371)
Q Consensus 187 pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~ 238 (371)
||+.++|++|+++|++++|+||+. ...+...++.+|+.++|+.++.+++
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~---Re~v~~~Le~lgL~~yFDvII~~g~ 199 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGN---REHVVHSLKETKLEGYFDIIICGGR 199 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCC---hHHHHHHHHHcCCCccccEEEECCC
Confidence 788899999999999999999943 7788999999999999987655444
No 136
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.02 E-value=1.2e-05 Score=89.04 Aligned_cols=114 Identities=22% Similarity=0.297 Sum_probs=73.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHH
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 263 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~ 263 (371)
+++||+.+.|+.|+++|++++++|+ .....+..+.+.+|+...+..+ +++++... -.++.+
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTG---D~~~tA~~ia~~~Gi~~~~~~~-v~g~~l~~--------------~~~~~l- 588 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITG---DSQETAVSIARRLGMPSKTSQS-VSGEKLDA--------------MDDQQL- 588 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCCCCCCce-eEhHHhHh--------------CCHHHH-
Confidence 7899999999999999999999999 5588899999999998765543 23322211 110000
Q ss_pred HHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 264 TEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 264 ~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
. ++. +-..-...+.|+.+-.+| ..+++. .+.+.|+||+.||+.|+++|++...
T Consensus 589 ---~--------~~~-------~~~~Vfar~~P~~K~~iv----~~lq~~---g~~v~mvGDGvND~pAl~~AdVGia 641 (884)
T TIGR01522 589 ---S--------QIV-------PKVAVFARASPEHKMKIV----KALQKR---GDVVAMTGDGVNDAPALKLADIGVA 641 (884)
T ss_pred ---H--------HHh-------hcCeEEEECCHHHHHHHH----HHHHHC---CCEEEEECCCcccHHHHHhCCeeEe
Confidence 0 000 000111223344333332 223333 4789999999999999999996443
No 137
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.01 E-value=1.4e-05 Score=74.71 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=40.6
Q ss_pred cCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 180 SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 180 ~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
....++.||+.+|++.++++|++|.++||........+..-|...|...
T Consensus 111 ~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~ 159 (229)
T PF03767_consen 111 SGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPG 159 (229)
T ss_dssp CTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTST
T ss_pred cccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCc
Confidence 3345789999999999999999999999977666677777788888654
No 138
>PLN02382 probable sucrose-phosphatase
Probab=98.00 E-value=2e-05 Score=79.94 Aligned_cols=43 Identities=14% Similarity=-0.048 Sum_probs=37.5
Q ss_pred HHHHHHHHc---CCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 305 ALRAGAEYA---EKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 305 ~~~~a~~~l---gv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
|++..++++ |++++++++|||+.||++|.+.+|...|.+.++.
T Consensus 179 Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~ 224 (413)
T PLN02382 179 ALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQ 224 (413)
T ss_pred HHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCc
Confidence 488889999 9999999999999999999999997666666543
No 139
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.96 E-value=2.3e-05 Score=85.09 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=39.4
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
+++||+.+.|+.|+++|++++++|+ .....++.+.+.+|++.+
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTG---d~~~~a~~ia~~lgi~~~ 610 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTG---DNPRAAAAIAGELGIDFR 610 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCCee
Confidence 7899999999999999999999999 558899999999999743
No 140
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.95 E-value=1.1e-05 Score=75.26 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=31.9
Q ss_pred HHHHHHHcCC--CCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 306 LRAGAEYAEK--PVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 306 ~~~a~~~lgv--~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
++..++.+++ ++.+|++|||+.||+.|.+.+|+.++.
T Consensus 186 l~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v 224 (225)
T TIGR02461 186 IKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLV 224 (225)
T ss_pred HHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEec
Confidence 6777788866 677999999999999999999997653
No 141
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=97.92 E-value=5.8e-05 Score=63.92 Aligned_cols=116 Identities=8% Similarity=0.091 Sum_probs=86.7
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc--cchheeecchhHHhhhhccccccccccCCch
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER--ISKIKIVGNEEVERSLYGQFVLGKGISSGVD 259 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~--~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~ 259 (371)
.-++++.|.+.|++|.+. +.++|.|+-. ...+....+..|+.- .|.. .
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr---~gsl~~lae~~gi~~~rv~a~----a---------------------- 77 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDR---KGSLVQLAEFVGIPVERVFAG----A---------------------- 77 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCc---chHHHHHHHHcCCceeeeecc----c----------------------
Confidence 456899999999999999 9999999833 455667777777642 2211 0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCc
Q 017455 260 EQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP 339 (371)
Q Consensus 260 ~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~ 339 (371)
+++. =....+.|+-+-+.|+||||+.||+.+.++|.+.
T Consensus 78 -----------------------------------~~e~-------K~~ii~eLkk~~~k~vmVGnGaND~laLr~ADlG 115 (152)
T COG4087 78 -----------------------------------DPEM-------KAKIIRELKKRYEKVVMVGNGANDILALREADLG 115 (152)
T ss_pred -----------------------------------CHHH-------HHHHHHHhcCCCcEEEEecCCcchHHHhhhcccc
Confidence 0110 1334666776778999999999999999999998
Q ss_pred EEEECCCCCCCcccccccccchHHHHhhhh
Q 017455 340 CVVMRSRCITTLPVSKTQRLADMLCRILKS 369 (371)
Q Consensus 340 ~v~v~~~~~~~~~l~~~~~~~~~l~~~l~~ 369 (371)
.+.+.....+...+..++.++.++.++++-
T Consensus 116 I~tiq~e~v~~r~l~~ADvvik~i~e~ldl 145 (152)
T COG4087 116 ICTIQQEGVPERLLLTADVVLKEIAEILDL 145 (152)
T ss_pred eEEeccCCcchHHHhhchhhhhhHHHHHHH
Confidence 888877665656677888888888888763
No 142
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.87 E-value=3e-05 Score=67.62 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=68.5
Q ss_pred HHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHHHHHHHHHhH
Q 017455 193 VDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSA 272 (371)
Q Consensus 193 L~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~ 272 (371)
|+.|.+.|++++|+|+.. ...++...+.||+.+++..+ . .|
T Consensus 44 ik~l~~~Gi~vAIITGr~---s~ive~Ra~~LGI~~~~qG~----~----------------------------dK---- 84 (170)
T COG1778 44 IKLLLKSGIKVAIITGRD---SPIVEKRAKDLGIKHLYQGI----S----------------------------DK---- 84 (170)
T ss_pred HHHHHHcCCeEEEEeCCC---CHHHHHHHHHcCCceeeech----H----------------------------hH----
Confidence 567778899999999954 68899999999999876542 0 01
Q ss_pred HHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEE
Q 017455 273 QKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVM 343 (371)
Q Consensus 273 ~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v 343 (371)
..+|+..++++++.+++|.||||-.+|+...++.|+.+..-
T Consensus 85 ------------------------------~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a~~ 125 (170)
T COG1778 85 ------------------------------LAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVAVA 125 (170)
T ss_pred ------------------------------HHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCccccc
Confidence 12499999999999999999999999999999999987664
No 143
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.83 E-value=0.00017 Score=67.48 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=38.5
Q ss_pred cCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 180 SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 180 ~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
....++.|++.++++.|+++|++|.++|+.+......+..-|.+.|...+
T Consensus 116 ~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~ 165 (229)
T TIGR01675 116 KGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW 165 (229)
T ss_pred cCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc
Confidence 34578999999999999999999999999653333335566777776643
No 144
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.80 E-value=0.00019 Score=76.18 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCCCcEEEE--eCCHhhHHHHHHcCCcEEEE
Q 017455 305 ALRAGAEYAEKPVRNCFLI--AGSQSGVAGAQRIGMPCVVM 343 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~I--gDs~~Di~aA~~aGm~~v~v 343 (371)
|++..++.+|++.++++.| ||+.||+.|.+.+|..+++=
T Consensus 617 AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM~ 657 (694)
T PRK14502 617 AIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILVQ 657 (694)
T ss_pred HHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEEc
Confidence 4899999999999999988 99999999999999987773
No 145
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=97.79 E-value=0.00086 Score=69.62 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=66.5
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHH-cCccccchheeecch-hH-HhhhhccccccccccCCchhH
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK-LGSERISKIKIVGNE-EV-ERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~-lgl~~~f~~~i~~~~-~~-~~~~f~~~v~g~~v~~~~~~~ 261 (371)
++|.+.+.+ +++|. .+|+|. +++.+++.+.+. +|++.. ++.+ ++ ..+.|.+.+.|.+...|.
T Consensus 111 l~~~a~~~~---~~~g~-~vvVSA---Sp~~~Vepfa~~~LGid~V-----IgTeLev~~~G~~TG~i~g~~~c~Ge--- 175 (497)
T PLN02177 111 VHPETWRVF---NSFGK-RYIITA---SPRIMVEPFVKTFLGADKV-----LGTELEVSKSGRATGFMKKPGVLVGD--- 175 (497)
T ss_pred cCHHHHHHH---HhCCC-EEEEEC---CcHHHHHHHHHHcCCCCEE-----EecccEECcCCEEeeeecCCCCCccH---
Confidence 677766654 45675 499999 668999999976 899873 2322 33 245566566554433331
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
.| ...+.+.+|.+... ++.|||.+|..+...++-..+
T Consensus 176 -----~K-------------------------------------v~rl~~~~g~~~~~-~aYgDS~sD~plL~~a~e~y~ 212 (497)
T PLN02177 176 -----HK-------------------------------------RDAVLKEFGDALPD-LGLGDRETDHDFMSICKEGYM 212 (497)
T ss_pred -----HH-------------------------------------HHHHHHHhCCCCce-EEEECCccHHHHHHhCCccEE
Confidence 01 23333556654444 899999999999999998766
Q ss_pred EEC
Q 017455 342 VMR 344 (371)
Q Consensus 342 ~v~ 344 (371)
.-.
T Consensus 213 V~~ 215 (497)
T PLN02177 213 VPR 215 (497)
T ss_pred eCC
Confidence 654
No 146
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.70 E-value=0.00022 Score=68.07 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=37.9
Q ss_pred cCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 180 SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 180 ~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
....++.||+.+|.+.++++|++|.++||........+..-|.+.|...
T Consensus 141 ~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~ 189 (275)
T TIGR01680 141 KGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT 189 (275)
T ss_pred cccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC
Confidence 3457899999999999999999999999976434445555566666643
No 147
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.68 E-value=0.00072 Score=60.30 Aligned_cols=108 Identities=11% Similarity=0.126 Sum_probs=66.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHH-HHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHH
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRI-ARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 263 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~-~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~ 263 (371)
|..-+++||+-...+|-.++.+|+.+....+. ...+.+.+.+.....+. ..|+
T Consensus 115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~---------------f~Gd----------- 168 (237)
T COG3700 115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVI---------------FAGD----------- 168 (237)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCccee---------------eccC-----------
Confidence 55567778888888999999999976333222 33333455554332221 1121
Q ss_pred HHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEE
Q 017455 264 TEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVM 343 (371)
Q Consensus 264 ~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v 343 (371)
||.|.-|+ + -.+++.-+++ |+.|||-+||.||+.+|.+.|-+
T Consensus 169 ----------------------k~k~~qy~-------K-----t~~i~~~~~~----IhYGDSD~Di~AAkeaG~RgIRi 210 (237)
T COG3700 169 ----------------------KPKPGQYT-------K-----TQWIQDKNIR----IHYGDSDNDITAAKEAGARGIRI 210 (237)
T ss_pred ----------------------CCCccccc-------c-----cHHHHhcCce----EEecCCchhhhHHHhcCccceeE
Confidence 33333321 1 1234444544 99999999999999999998876
Q ss_pred C-CCCCCCcccccc
Q 017455 344 R-SRCITTLPVSKT 356 (371)
Q Consensus 344 ~-~~~~~~~~l~~~ 356 (371)
- .......+++.+
T Consensus 211 lRAaNSTy~PlP~a 224 (237)
T COG3700 211 LRAANSTYKPLPQA 224 (237)
T ss_pred EecCCccCCcCccc
Confidence 3 444555566644
No 148
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.68 E-value=0.00029 Score=62.09 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
..|++.++++.++++|++++++|+..
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp 53 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARP 53 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCc
Confidence 45899999999999999999999954
No 149
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.63 E-value=8.8e-05 Score=79.40 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=40.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f 230 (371)
+++||+.+.++.|++.|++++++|+ .....+..+.+.+|+++++
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTG---D~~~ta~~iA~~lGI~~v~ 489 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITG---DNRLTAAAIAAEAGVDDFI 489 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCCEEE
Confidence 7899999999999999999999999 5588999999999998754
No 150
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.58 E-value=0.00022 Score=79.40 Aligned_cols=42 Identities=26% Similarity=0.523 Sum_probs=37.8
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
+++||+.+.|+.|+++|+++.++|+ .....+..+.+.+|+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTG---D~~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITG---DNKETAEAICRRIGIFS 578 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecC---CCHHHHHHHHHHcCCCC
Confidence 6899999999999999999999999 44688899999999853
No 151
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=97.57 E-value=0.0017 Score=60.17 Aligned_cols=107 Identities=10% Similarity=0.144 Sum_probs=73.2
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
...+++|...++..++.|++++|.|.++ ......+...-+-.+.- +...+.|+. ..|.
T Consensus 122 ~~v~aDv~~a~e~w~~~g~~vyIYSSgs---v~AqKllfg~s~~gdl~--------~y~~gyfDt-~iG~---------- 179 (254)
T KOG2630|consen 122 AHVYADVLPAIERWSGEGVRVYIYSSGS---VAAQKLLFGYSDAGDLR--------KYISGYFDT-TIGL---------- 179 (254)
T ss_pred ccccchhHHHHHHHhhcCceEEEEcCCc---HHHHHHHHcccCcchHH--------HHhhhhhhc-cccc----------
Confidence 4589999999999999999999999853 33333333322211110 112222322 1121
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
|-.-.+ |..+.+.+|.++.|.+|.-|-..-..+|+.+|+.+.+
T Consensus 180 -----------------------K~e~~s--------------y~~I~~~Ig~s~~eiLfLTd~~~Ea~aa~~aGl~a~l 222 (254)
T KOG2630|consen 180 -----------------------KVESQS--------------YKKIGHLIGKSPREILFLTDVPREAAAARKAGLQAGL 222 (254)
T ss_pred -----------------------eehhHH--------------HHHHHHHhCCChhheEEeccChHHHHHHHhcccceee
Confidence 111222 8999999999999999999999999999999999888
Q ss_pred ECCCCC
Q 017455 343 MRSRCI 348 (371)
Q Consensus 343 v~~~~~ 348 (371)
+-++..
T Consensus 223 ~~rPgn 228 (254)
T KOG2630|consen 223 VSRPGN 228 (254)
T ss_pred eecCCC
Confidence 865544
No 152
>PLN02645 phosphoglycolate phosphatase
Probab=97.53 E-value=0.00076 Score=65.85 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=65.6
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHHH
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLAT 264 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~ 264 (371)
+.||+.++|+.|+++|++++++||.+..........++.+|+...++.++.+. .
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~-~------------------------- 98 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSS-F------------------------- 98 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehH-H-------------------------
Confidence 67999999999999999999999965333333344557888875555432211 0
Q ss_pred HHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 265 EARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 265 ~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
+....++..+......|+++++..+.+.++.+|+.++.
T Consensus 99 ----------------------------------------~~~~~l~~~~~~~~~~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 99 ----------------------------------------AAAAYLKSINFPKDKKVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred ----------------------------------------HHHHHHHhhccCCCCEEEEEcCHHHHHHHHHCCCEEec
Confidence 03344555555555679999999999999999998765
No 153
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.49 E-value=5.6e-05 Score=72.88 Aligned_cols=37 Identities=11% Similarity=-0.018 Sum_probs=28.5
Q ss_pred HHHHHHHcCC--CCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 306 LRAGAEYAEK--PVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 306 ~~~a~~~lgv--~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
++...+.+.- .+-.+|.+|||+||+.|.+.+-..+|+
T Consensus 213 ~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi 251 (302)
T PRK12702 213 VQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVL 251 (302)
T ss_pred HHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEe
Confidence 4444444443 345899999999999999999998877
No 154
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.47 E-value=0.00023 Score=76.32 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=40.5
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f 230 (371)
+++||+.+.+++||+.|+++.++|+ .....+..+-+.+|++++|
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTG---Dn~~TA~aIA~elGI~~v~ 484 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTG---DNELTAATIAKEAGVDRFV 484 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCceEE
Confidence 7899999999999999999999999 5688899999999998755
No 155
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.45 E-value=0.00023 Score=76.37 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=40.2
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f 230 (371)
+++||+.+.+++|++.|+++.++|+ .....+..+-+.+|++++|
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTG---Dn~~TA~aIA~elGId~v~ 488 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITG---DNPLTAAAIAAEAGVDDFL 488 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCcEEE
Confidence 5799999999999999999999999 5688999999999998754
No 156
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00045 Score=74.39 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=41.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccch
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK 231 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~ 231 (371)
-+++|++.+.|++|++.|++++++|+ ..+..++.+-+++|+++++.
T Consensus 536 D~~R~~a~~aI~~L~~~Gi~~~mLTG---Dn~~~A~~iA~~lGId~v~A 581 (713)
T COG2217 536 DELRPDAKEAIAALKALGIKVVMLTG---DNRRTAEAIAKELGIDEVRA 581 (713)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcChHhhec
Confidence 45899999999999999999999999 66899999999999987654
No 157
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.33 E-value=0.00033 Score=61.71 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=43.1
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc-ccchheeecc
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE-RISKIKIVGN 237 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~-~~f~~~i~~~ 237 (371)
.+.++||+.++|+.|++. +.++|+|++ ...++..+++.+++. .+|...+++.
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~---~~~yA~~vl~~ldp~~~~F~~ri~~r 108 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMG---TRAYAQAIAKLIDPDGKYFGDRIISR 108 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCC---cHHHHHHHHHHhCcCCCeeccEEEEe
Confidence 356899999999999965 999999995 489999999999998 5785445544
No 158
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.24 E-value=0.0018 Score=57.02 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=30.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL 224 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~l 224 (371)
.+|||.++...++++||++..+|+........++..+...
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 5789999999999999999999995533344455555544
No 159
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=97.24 E-value=0.00072 Score=69.21 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=71.3
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHc---------CccccchheeecchhHHhhhhc------c
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL---------GSERISKIKIVGNEEVERSLYG------Q 247 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~l---------gl~~~f~~~i~~~~~~~~~~f~------~ 247 (371)
+..-|.+..+|+.||++|-++-++|| |+-.++..+++.+ .+.++||++|+.+.-= .+|. .
T Consensus 182 i~k~~~l~~~L~~lr~~GKklFLiTN---S~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP--~FF~~~~pfr~ 256 (448)
T PF05761_consen 182 IHKDPKLPPWLERLRSAGKKLFLITN---SPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKP--GFFTEGRPFRE 256 (448)
T ss_dssp EE--CHHHHHHHHHHCCT-EEEEE-S---S-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CC--HHHCT---EEE
T ss_pred ccCCchHHHHHHHHHhcCceEEEecC---CCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCC--cccCCCCceEE
Confidence 44578999999999999999999999 5578888888754 3668999988865411 1121 1
Q ss_pred ccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCH
Q 017455 248 FVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ 327 (371)
Q Consensus 248 ~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~ 327 (371)
+.+..+...... .++..++. .+|. ... .....+.+|....++++|||+.
T Consensus 257 vd~~~g~l~~~~---------------------~~~~l~~g-~vY~-gGn--------~~~l~~ll~~~g~~VLY~GDhi 305 (448)
T PF05761_consen 257 VDTETGKLKWGK---------------------YVGPLEKG-KVYS-GGN--------WDQLHKLLGWRGKEVLYFGDHI 305 (448)
T ss_dssp EETTTSSEECS------------------------SS--TC--EEE-E----------HHHHHHHCT--GGGEEEEESST
T ss_pred EECCCCcccccc---------------------ccccccCC-CEee-cCC--------HHHHHHHHccCCCeEEEECCch
Confidence 111111100000 00000111 0100 000 5666788899999999999997
Q ss_pred h-hHHHHHHc-CCcEEEEC
Q 017455 328 S-GVAGAQRI-GMPCVVMR 344 (371)
Q Consensus 328 ~-Di~aA~~a-Gm~~v~v~ 344 (371)
. ||...+.. |+.|++|-
T Consensus 306 ~~Di~~~k~~~gWrT~~Ii 324 (448)
T PF05761_consen 306 YGDILKSKKRHGWRTAAII 324 (448)
T ss_dssp TTTHHHHHHHH-SEEEEE-
T ss_pred hhhhhhhccccceEEEEEe
Confidence 4 98887777 99999985
No 160
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0023 Score=56.57 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=30.4
Q ss_pred HHHHcCCCCCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCC
Q 017455 309 GAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCIT 349 (371)
Q Consensus 309 a~~~lgv~p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~ 349 (371)
+.+..+++ +|++|+. +-++.|+.+|++++++++++..
T Consensus 129 ~vrth~id----lf~ed~~~na~~iAk~~~~~vilins~ynR 166 (194)
T COG5663 129 AVRTHNID----LFFEDSHDNAGQIAKNAGIPVILINSPYNR 166 (194)
T ss_pred hhHhhccC----ccccccCchHHHHHHhcCCcEEEecCcccc
Confidence 35667777 8999996 4678888899999999988764
No 161
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.08 E-value=0.0011 Score=73.70 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=38.5
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
-+++|++.+.|+.|+++|+++.++|+ .....+..+.+.+|+.
T Consensus 549 Dp~R~~a~~aI~~l~~aGI~v~miTG---D~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 549 DPPKETTAPALKALKASGVTVKILTG---DSELVAAKVCHEVGLD 590 (902)
T ss_pred CcchhhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCC
Confidence 36899999999999999999999999 5588899999999995
No 162
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.06 E-value=0.0057 Score=49.80 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=36.9
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchh
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKI 232 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~ 232 (371)
..+.||+.++|+.|+++|.+++++||.+..........++.+|+.--.+.
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~ 62 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDE 62 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGG
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCE
Confidence 34899999999999999999999999875554566666788998743343
No 163
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=96.98 E-value=0.0015 Score=72.35 Aligned_cols=41 Identities=17% Similarity=0.463 Sum_probs=38.0
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
+++|++.+.|+.|+++|+++.++|+ .....+..+-+.+|+.
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTG---D~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTG---DNEIVTARICQEVGID 555 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCC
Confidence 6899999999999999999999999 5578899999999996
No 164
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0027 Score=70.74 Aligned_cols=121 Identities=18% Similarity=0.244 Sum_probs=74.9
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccch-heeecchhHHhhhhccccccccccCCchhH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK-IKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~-~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
-||+|++.+.|+.|+++|+++.++|+ .....+..+-+.+|+..--. ..++.+.+.. .-.++.
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTG---D~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~--------------~l~~~e 608 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITG---DHVETAIAIAKECGIEAEAESALVIDGAELD--------------ALSDEE 608 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECC---CCHHHHHHHHHHcCCCCCCCceeEeehHHhh--------------hcCHHH
Confidence 57999999999999999999999999 66888999999999854321 1122222221 111110
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 262 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 262 ~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
+. +.+. +-+ -++.=+|+-+-.+ -.++++.| .-+.|.||+.||+.|.++|.+-..
T Consensus 609 l~---------------~~~~---~~~-VfARvsP~qK~~I----V~~lq~~g---~vVamtGDGvNDapALk~ADVGIa 662 (917)
T COG0474 609 LA---------------ELVE---ELS-VFARVSPEQKARI----VEALQKSG---HVVAMTGDGVNDAPALKAADVGIA 662 (917)
T ss_pred HH---------------HHhh---hCc-EEEEcCHHHHHHH----HHHHHhCC---CEEEEeCCCchhHHHHHhcCccEE
Confidence 00 0000 000 1111122222223 33344544 568999999999999999999887
Q ss_pred EECCC
Q 017455 342 VMRSR 346 (371)
Q Consensus 342 ~v~~~ 346 (371)
+...|
T Consensus 663 mg~~G 667 (917)
T COG0474 663 MGGEG 667 (917)
T ss_pred ecccH
Confidence 76543
No 165
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.92 E-value=0.0022 Score=71.35 Aligned_cols=41 Identities=17% Similarity=0.343 Sum_probs=38.1
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
+++|++.+.|+.|+++|+++.++|+ .....+..+-+.+|+.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTG---D~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTG---DNPIVTAKICREVGLE 590 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999 5578899999999995
No 166
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=96.90 E-value=0.0029 Score=69.10 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=38.8
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
+++|++.+.|+.|++.|+++.++|+ .....+..+-+.+|+.+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTG---D~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTG---DHLAIAKETARRLGLGT 483 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCCC
Confidence 7999999999999999999999999 55888999999999964
No 167
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=96.83 E-value=0.0062 Score=68.95 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=37.9
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
-+++|++.+.|+.|+++|+++.++|+ .....+..+.+.+|+.
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTG---D~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITG---DNPLTAVHVARECGIV 696 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCC
Confidence 36999999999999999999999999 5578888889999994
No 168
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.80 E-value=0.0035 Score=70.77 Aligned_cols=42 Identities=21% Similarity=0.310 Sum_probs=38.5
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
-+++|++.+.|+.|+++|+++.++|+ .....+..+.+.+|+.
T Consensus 645 Dp~r~~v~~aI~~l~~aGIkv~MiTG---D~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 645 DPPRNESAGAVEKCHQAGINVHMLTG---DFPETAKAIAQEVGII 686 (1053)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECC---CCHHHHHHHHHHcCCC
Confidence 37999999999999999999999999 5578899999999995
No 169
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.75 E-value=0.0032 Score=53.51 Aligned_cols=50 Identities=18% Similarity=0.098 Sum_probs=43.6
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchhee
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKI 234 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i 234 (371)
.+.++|.|++++..+|+.|+-+...|= +..+.+-..+..+++..+|...+
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sW---N~~~kA~~aLral~~~~yFhy~V 88 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASW---NFEDKAIKALRALDLLQYFHYIV 88 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeec---CchHHHHHHHHHhchhhhEEEEE
Confidence 356999999999999999999888886 56778888899999999998754
No 170
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=96.71 E-value=0.016 Score=54.18 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=37.1
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCC-cHHHHHHHHHcCcccc
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSG-DRIARSVVEKLGSERI 229 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~-~~~~~~~l~~lgl~~~ 229 (371)
..++.||+.+|++..-++|.+|..+||..... ......-+.++|+...
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~ 168 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQV 168 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccc
Confidence 46689999999999999999999999976332 3345555677777653
No 171
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.58 E-value=0.0049 Score=68.96 Aligned_cols=42 Identities=29% Similarity=0.512 Sum_probs=38.5
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
+++|++.+.|+.|+++|+++.++|+ .....+..+-+.+|+..
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTG---D~~~tA~~iA~~~GI~~ 620 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTG---DNIDTAKAIARNCGILT 620 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECC---CChHHHHHHHHHcCCCC
Confidence 7999999999999999999999999 55788999999999963
No 172
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.0095 Score=64.71 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=39.4
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
-+++||+...+..|++.|++++++|+ ..+..++++.+.+|++..
T Consensus 722 D~vr~~a~~av~~Lk~~Gi~v~mLTG---Dn~~aA~svA~~VGi~~V 765 (951)
T KOG0207|consen 722 DQVRPDAALAVAELKSMGIKVVMLTG---DNDAAARSVAQQVGIDNV 765 (951)
T ss_pred cccchhHHHHHHHHHhcCceEEEEcC---CCHHHHHHHHHhhCcceE
Confidence 35899999999999999999999999 668999999999996653
No 173
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.28 E-value=0.012 Score=66.23 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=37.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
-+|+|++.+.|+.++++|+++.++|+ .....+..+.+.+|+.
T Consensus 567 Dplr~~v~~aI~~l~~~Gi~v~~~TG---d~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 567 DPPRAAVPDAVGKCRSAGIKVIMVTG---DHPITAKAIAKGVGII 608 (997)
T ss_pred CCChHHHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCC
Confidence 37899999999999999999999999 4477888899999984
No 174
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.23 E-value=0.0058 Score=55.30 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
++.+++++|++++++++|||+.+|+.+++.+|+.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~vam 204 (204)
T TIGR01484 168 LQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVAV 204 (204)
T ss_pred HHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceEC
Confidence 8999999999999999999999999999999998753
No 175
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=96.04 E-value=0.014 Score=66.17 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=36.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
-+++|||.+.|+.|+++|+++.++|+ .....+..+....|+-
T Consensus 630 D~lq~~v~etI~~L~~AGIkv~mlTG---D~~~TA~~IA~~~~ii 671 (1057)
T TIGR01652 630 DKLQEGVPETIELLRQAGIKIWVLTG---DKVETAINIGYSCRLL 671 (1057)
T ss_pred hhhhhccHHHHHHHHHCCCeEEEEcC---CcHHHHHHHHHHhCCC
Confidence 36999999999999999999999999 4567778888888874
No 176
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=96.02 E-value=0.0077 Score=55.12 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 305 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
|++..++.+|++++++++|||+.||+.|.+.+|..+++=+
T Consensus 190 ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~n 229 (254)
T PF08282_consen 190 AIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGN 229 (254)
T ss_dssp HHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETT
T ss_pred HHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcC
Confidence 4789999999999999999999999999999999866643
No 177
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=96.01 E-value=0.013 Score=55.00 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHc-------CCcEEEECCC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI-------GMPCVVMRSR 346 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~a-------Gm~~v~v~~~ 346 (371)
++.++++++.+++++++|||+.+|+.+++.+ |..+|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g 219 (244)
T TIGR00685 172 VKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG 219 (244)
T ss_pred HHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC
Confidence 8899999999999999999999999999999 7788888644
No 178
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.95 E-value=0.037 Score=56.09 Aligned_cols=104 Identities=11% Similarity=0.094 Sum_probs=77.7
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
+-+.-...++.+.+.+.|-+|+++|..- -+....+.++...|.+-.--.+..|+++...
T Consensus 98 Lypn~~~~eL~e~ai~n~krVIlISDMY-lps~Il~~~L~s~g~d~~nipiY~S~e~rl~-------------------- 156 (635)
T COG5610 98 LYPNKKNIELVEEAIKNEKRVILISDMY-LPSSILRTFLNSFGPDFNNIPIYMSSEFRLK-------------------- 156 (635)
T ss_pred eeccccchHHHHHHHhCCCeEEEEeccc-CcHHHHHHHHHhcCCCccCceeeecceeehh--------------------
Confidence 3344556789999999999999999865 4567788888888876443323333333211
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHh-hHHHHHHcCCcEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQS-GVAGAQRIGMPCV 341 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~-Di~aA~~aGm~~v 341 (371)
|-+-.+ |.+++...+++|.+.+++||..+ |+..++..|+.|.
T Consensus 157 -----------------------KnSg~L--------------Fk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~LgI~Tl 199 (635)
T COG5610 157 -----------------------KNSGNL--------------FKAVLKLENVDPKKWIHCGDNWVADYLKPKNLGISTL 199 (635)
T ss_pred -----------------------cccchH--------------HHHHHhhcCCChhheEEecCchhhhhcCccccchhHH
Confidence 333444 89999999999999999999975 9999999999987
Q ss_pred EEC
Q 017455 342 VMR 344 (371)
Q Consensus 342 ~v~ 344 (371)
+.-
T Consensus 200 f~~ 202 (635)
T COG5610 200 FYI 202 (635)
T ss_pred HHH
Confidence 753
No 179
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.85 E-value=0.061 Score=51.52 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=33.9
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
+.||+.++|+.|+++|++++++||.+..........+.++|+...
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~ 63 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL 63 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 678999999999999999999999542223333355677887543
No 180
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=95.85 E-value=0.07 Score=55.13 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=27.7
Q ss_pred HHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHH-cCcccc
Q 017455 192 FVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK-LGSERI 229 (371)
Q Consensus 192 lL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~-lgl~~~ 229 (371)
.++..+..| +++|+|. +++..++..++. +|.+..
T Consensus 101 ~~~~~~~~g-~~vVVTA---sPrvmVEpFake~LG~D~V 135 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTR---MPRVMVERFAKEHLRADEV 135 (498)
T ss_pred HHHHHHcCC-eEEEEeC---CHHHHHHHHHHHhcCCceE
Confidence 455667778 9999999 779999999998 888763
No 181
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=95.82 E-value=0.0083 Score=55.78 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=34.2
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEE
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 342 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~ 342 (371)
++.+++++|++++++++|||+.||+.|++.+|...++
T Consensus 164 l~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav 200 (236)
T TIGR02471 164 LRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVV 200 (236)
T ss_pred HHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEE
Confidence 8999999999999999999999999999999876654
No 182
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.82 E-value=0.64 Score=43.47 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=32.7
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCc
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 226 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl 226 (371)
..++.||+.+.+..|.++ ++-+|+|. +...+++++...+|+
T Consensus 81 sa~lvPgA~etm~~l~~~-~tp~v~ST---SY~qy~~r~a~~ig~ 121 (315)
T COG4030 81 SAKLVPGAEETMATLQER-WTPVVIST---SYTQYLRRTASMIGV 121 (315)
T ss_pred hcccCCChHHHHHHHhcc-CCceEEec---cHHHHHHHHHHhcCC
Confidence 477999999999999887 55556665 457888888888887
No 183
>PLN03190 aminophospholipid translocase; Provisional
Probab=95.61 E-value=0.04 Score=62.97 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=34.4
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 226 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl 226 (371)
-++++|+.+.|+.|+++|+++.++|+ .....+..+-...|+
T Consensus 725 D~lr~~v~~~I~~l~~agi~v~mlTG---D~~~tAi~IA~s~~L 765 (1178)
T PLN03190 725 DKLQQGVPEAIESLRTAGIKVWVLTG---DKQETAISIGYSSKL 765 (1178)
T ss_pred cCCchhHHHHHHHHHHCCCEEEEECC---CCHHHHHHHHHHhCC
Confidence 37999999999999999999999999 445666677666666
No 184
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.61 E-value=0.14 Score=48.36 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=40.9
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGN 237 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~ 237 (371)
+.||+.++|+.|+++|++++++||.+..........++.+|++...+.++.++
T Consensus 18 ~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~ 70 (249)
T TIGR01457 18 RIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTAS 70 (249)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHH
Confidence 56799999999999999999999955344566677788899876555544443
No 185
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=95.58 E-value=0.014 Score=54.94 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCC--CCcEEEEeCCHhhHHHHHHcCCcEEEECC
Q 017455 305 ALRAGAEYAEKP--VRNCFLIAGSQSGVAGAQRIGMPCVVMRS 345 (371)
Q Consensus 305 ~~~~a~~~lgv~--p~e~I~IgDs~~Di~aA~~aGm~~v~v~~ 345 (371)
|++.+++++|++ .+++++|||+.||+.|.+.+|..+++-+.
T Consensus 180 ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na 222 (256)
T TIGR01486 180 AANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGP 222 (256)
T ss_pred HHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCC
Confidence 378899999999 99999999999999999999998887653
No 186
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.047 Score=59.08 Aligned_cols=123 Identities=18% Similarity=0.194 Sum_probs=73.8
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHH
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 262 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~ 262 (371)
-||||+|.+.++.+++.|++|..+|+ .....+..+-.++|+-..-+. + -....+|+....=.++++
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITG---D~~~TA~AI~r~iGi~~~~ed-------~----~~~~~TG~efD~ls~~~~ 648 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITG---DNKETAEAIAREIGIFSEDED-------V----SSMALTGSEFDDLSDEEL 648 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcC---CCHHHHHHHHHHhCCCcCCcc-------c----cccccchhhhhcCCHHHH
Confidence 47999999999999999999999999 557889999999997432221 0 011233333322111111
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhccCccccC-CCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 263 ATEARKAVSAQKQEIAEEVASMLKLSVDID-TSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 263 ~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~-~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
. ..+..+.++ .-.|+-+-+|| .++++.| +=+-|-||+.||-.|.+.|.+...
T Consensus 649 ~--------------------~~~~~~~vFaR~~P~HK~kIV----eaLq~~g---eivAMTGDGVNDApALK~AdIGIA 701 (972)
T KOG0202|consen 649 D--------------------DAVRRVLVFARAEPQHKLKIV----EALQSRG---EVVAMTGDGVNDAPALKKADIGIA 701 (972)
T ss_pred H--------------------HHhhcceEEEecCchhHHHHH----HHHHhcC---CEEEecCCCccchhhhhhccccee
Confidence 1 001111111 11222223332 2344444 667899999999999999988766
Q ss_pred EECCC
Q 017455 342 VMRSR 346 (371)
Q Consensus 342 ~v~~~ 346 (371)
+=.+|
T Consensus 702 MG~~G 706 (972)
T KOG0202|consen 702 MGISG 706 (972)
T ss_pred ecCCc
Confidence 64333
No 187
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=95.39 E-value=0.041 Score=62.02 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc-CCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCc
Q 017455 158 EKKAFVKNVLQEKKNALDEFLAS-KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 226 (371)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~l~~-~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl 226 (371)
++++.+++..+...+.+.-+-.. =+-++..||.+.|+.|+++|+|+.++|+ ...+.+-.+-...++
T Consensus 624 ~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTG---DK~ETAiNIg~sC~L 690 (1151)
T KOG0206|consen 624 DREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTG---DKQETAINIGYSCRL 690 (1151)
T ss_pred CHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcC---cHHHHHHHHHHhhcC
Confidence 44555555555555544322211 1356899999999999999999999999 445566666655555
No 188
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=95.30 E-value=0.046 Score=49.96 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 188 GVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 188 gv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
...+.|+.|+++|++++++|+. ....+..++..+++..
T Consensus 19 ~~~~al~~l~~~g~~~~i~TGR---~~~~~~~~~~~~~~~~ 56 (254)
T PF08282_consen 19 ETIEALKELQEKGIKLVIATGR---SYSSIKRLLKELGIDD 56 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEECSS---THHHHHHHHHHTTHCS
T ss_pred HHHHHHHhhcccceEEEEEccC---cccccccccccccchh
Confidence 3444567778889999999994 3667788888888773
No 189
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=95.04 E-value=0.13 Score=53.48 Aligned_cols=40 Identities=28% Similarity=0.514 Sum_probs=36.2
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 226 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl 226 (371)
+++|++.+.++.|++.|+++.++|+ .....+..+-+.+|+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltG---D~~~~a~~ia~~lgi 386 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTG---DNVLTAKAIAKELGI 386 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCc
Confidence 7999999999999999999999999 557888888888886
No 190
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=94.95 E-value=0.03 Score=52.88 Aligned_cols=42 Identities=21% Similarity=0.086 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 305 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
|++..++++++++++++++|||.||+.|. ..+.+.|+|.+..
T Consensus 169 Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na~ 210 (247)
T PF05116_consen 169 ALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNAQ 210 (247)
T ss_dssp HHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS-
T ss_pred HHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCCC
Confidence 48999999999999999999999999988 7888999998643
No 191
>PRK10444 UMP phosphatase; Provisional
Probab=94.83 E-value=0.42 Score=45.23 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=35.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
.+.||+.++|+.|+++|++++++||.+..........+..+|+.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~ 60 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVD 60 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 37899999999999999999999997743344455566778885
No 192
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=94.70 E-value=0.58 Score=44.33 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=38.1
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchhe
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIK 233 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~ 233 (371)
+.||+.++|+.|+++|++++++||.+..........+..+|+.--.+.+
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i 70 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEV 70 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHe
Confidence 6889999999999999999999997643334566778888986333443
No 193
>PTZ00174 phosphomannomutase; Provisional
Probab=93.92 E-value=0.048 Score=51.32 Aligned_cols=37 Identities=5% Similarity=-0.046 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCCCCcEEEEeC----CHhhHHHHHHcCCcEEEECC
Q 017455 305 ALRAGAEYAEKPVRNCFLIAG----SQSGVAGAQRIGMPCVVMRS 345 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgD----s~~Di~aA~~aGm~~v~v~~ 345 (371)
|++..+++ ++++++||| +.||++|.+.+|...+.|.+
T Consensus 192 al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n 232 (247)
T PTZ00174 192 CLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKN 232 (247)
T ss_pred HHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCC
Confidence 36777777 699999999 89999999999998888873
No 194
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=93.83 E-value=0.11 Score=49.54 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHc---CCcEEEECCCC
Q 017455 305 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI---GMPCVVMRSRC 347 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~a---Gm~~v~v~~~~ 347 (371)
|++.+++.+|++.+++++|||..+|+.|.+.+ |-..|.|..+.
T Consensus 178 al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~ 223 (266)
T PRK10187 178 AIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA 223 (266)
T ss_pred HHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC
Confidence 48899999999999999999999999998888 34556665543
No 195
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=93.77 E-value=0.033 Score=48.51 Aligned_cols=48 Identities=19% Similarity=0.504 Sum_probs=37.5
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCc-cccchhee
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS-ERISKIKI 234 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl-~~~f~~~i 234 (371)
+.+|||+.+||+.+.+. +.++|.|.+. ..++..+++.++. ..+|..++
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~---~~ya~~v~~~ldp~~~~~~~~~ 83 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSAS---EEYAEPVLDALDPNGKLFSRRL 83 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS----HHHHHHHHHHHTTTTSSEEEEE
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeeh---hhhhhHHHHhhhhhcccccccc
Confidence 45899999999999665 9999999954 8999999999988 46676543
No 196
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=93.53 E-value=0.68 Score=40.65 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=32.7
Q ss_pred CCCCcEEEEeCCH-hhHHHHHHcCCcEEEECCCCCCCc
Q 017455 315 KPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTL 351 (371)
Q Consensus 315 v~p~e~I~IgDs~-~Di~aA~~aGm~~v~v~~~~~~~~ 351 (371)
..++|.+||||.. .||-.|...|...||++.+....+
T Consensus 137 ~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~~ 174 (190)
T KOG2961|consen 137 CTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAEE 174 (190)
T ss_pred CChhHeEEEccchhhhHhhhhhccceeEEecccccccc
Confidence 7899999999997 699999999999999998765443
No 197
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=93.27 E-value=0.17 Score=49.85 Aligned_cols=128 Identities=14% Similarity=0.090 Sum_probs=72.8
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHc---CccccchheeecchhHHhhhhccccccccccCCchhH
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL---GSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 261 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~l---gl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~ 261 (371)
-.|....+++.|+++|-++-++|| ++..++...+..+ .+.++||++|+-.+.-. +| +.+...--+-+.
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTN---SPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~--Ff----tde~rPfR~~de 311 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITN---SPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPE--FF----TDERRPFRKYDE 311 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeC---CchhhhhcCceeeeCccHHhhhheeEEecCCCc--cc----ccccCcchhhcc
Confidence 356778899999999999999999 4555565555533 35689999877543211 01 110000000000
Q ss_pred H--HHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCH-hhHHHHH-HcC
Q 017455 262 L--ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQ-RIG 337 (371)
Q Consensus 262 ~--~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~-~Di~aA~-~aG 337 (371)
. +--=+|...-+|.+|+ | +.. +...++.-|-.-.+++++||+. +|+.... ++|
T Consensus 312 k~~sl~wdkv~klekgkiY-------------y--~G~--------l~~flelt~WrG~~VlYFGDHlySDLad~tlkhg 368 (510)
T KOG2470|consen 312 KRGSLLWDKVDKLEKGKIY-------------Y--QGN--------LKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHG 368 (510)
T ss_pred cccchhhhhhhhcccCcee-------------e--ecc--------HHHHHHHhccCCCeeEEecCcchhhhhhhHhhcc
Confidence 0 0000222222222221 0 000 3444566677788999999997 6988877 899
Q ss_pred CcEEEEC
Q 017455 338 MPCVVMR 344 (371)
Q Consensus 338 m~~v~v~ 344 (371)
+++-.+-
T Consensus 369 WRTgAII 375 (510)
T KOG2470|consen 369 WRTGAII 375 (510)
T ss_pred cccccch
Confidence 9876653
No 198
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=92.77 E-value=0.3 Score=51.64 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=22.4
Q ss_pred ceEEEEecCCccccccccCcHHHHHHHHHHcCCC
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLD 117 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~g~~ 117 (371)
-|.||=|+||||+.++.+ -+++...|.+
T Consensus 530 ~kIVISDIDGTITKSDvL------Gh~lp~iGkD 557 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDVL------GHVLPMIGKD 557 (738)
T ss_pred CcEEEecCCCceEhhhhh------hhhhhhhcCc
Confidence 579999999999988866 4566667776
No 199
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=92.65 E-value=0.57 Score=42.86 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=34.7
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
.||++.+||+.+.+ .+.|+|.|.+. ..++..++..+|+.
T Consensus 46 kRP~l~eFL~~~~~-~feIvVwTAa~---~~ya~~~l~~l~~~ 84 (195)
T TIGR02245 46 MRPYLHEFLTSAYE-DYDIVIWSATS---MKWIEIKMTELGVL 84 (195)
T ss_pred eCCCHHHHHHHHHh-CCEEEEEecCC---HHHHHHHHHHhccc
Confidence 69999999999998 59999999954 78999999998864
No 200
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=92.55 E-value=0.21 Score=51.67 Aligned_cols=43 Identities=16% Similarity=0.394 Sum_probs=37.9
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f 230 (371)
..||++|-..+||+-|++++.+|+ ...-.+..+....|++++.
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TG---DN~~TAa~IA~EAGVDdfi 490 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITG---DNPLTAAAIAAEAGVDDFI 490 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeC---CCHHHHHHHHHHhCchhhh
Confidence 579999999999999999999999 4567788888899999864
No 201
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=92.49 E-value=0.27 Score=46.88 Aligned_cols=33 Identities=3% Similarity=-0.081 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHH-CCCcEEEEcCCCCCCcHHHHHHHH
Q 017455 187 PGVEDFVDDAYN-EGIPLIVLTAYGKSGDRIARSVVE 222 (371)
Q Consensus 187 pgv~elL~~L~~-~Gi~v~IvTn~~~~~~~~~~~~l~ 222 (371)
|.+.+.|+.|++ .|++++|+|+.. ...+...+.
T Consensus 39 ~~~~~~L~~L~~~~g~~v~i~SGR~---~~~~~~~~~ 72 (266)
T PRK10187 39 DNILQGLQLLATANDGALALISGRS---MVELDALAK 72 (266)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCC---HHHHHHhcC
Confidence 445556667776 588888888843 344444443
No 202
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=91.84 E-value=1.6 Score=40.71 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=36.4
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCC-CCCcHHHHHHHHHcCccccchhee
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYG-KSGDRIARSVVEKLGSERISKIKI 234 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~-~~~~~~~~~~l~~lgl~~~f~~~i 234 (371)
.++||+.++|..++++|+++.++||.+ ++.......+.+.+|+.-..+.++
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~ii 65 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQII 65 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHee
Confidence 478999999999999999999999977 333344444444478764444433
No 203
>PLN02423 phosphomannomutase
Probab=91.76 E-value=0.14 Score=48.16 Aligned_cols=36 Identities=6% Similarity=-0.041 Sum_probs=31.3
Q ss_pred HHHcCCCCCcEEEEeC----CHhhHHHHHHcCCcEEEECCC
Q 017455 310 AEYAEKPVRNCFLIAG----SQSGVAGAQRIGMPCVVMRSR 346 (371)
Q Consensus 310 ~~~lgv~p~e~I~IgD----s~~Di~aA~~aGm~~v~v~~~ 346 (371)
++.+. +++++++||| +.||++|.+.-|..++-|+++
T Consensus 194 l~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~ 233 (245)
T PLN02423 194 LQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSP 233 (245)
T ss_pred HHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCH
Confidence 44444 9999999999 799999999999999999865
No 204
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=91.04 E-value=0.56 Score=38.01 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=20.3
Q ss_pred EEEecCCcccccccc-CcHHHHHHHHHHcCCC
Q 017455 87 VLLEVDGVLVDAYRF-GNRQAFNVAFQKLGLD 117 (371)
Q Consensus 87 viFD~DGTL~d~~~~-~~~~a~~~~~~~~g~~ 117 (371)
++||+||||+..... .-...+-+.+++.|.+
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~ 32 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKP 32 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSE
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCC
Confidence 689999999986543 2234444556666764
No 205
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=90.46 E-value=0.29 Score=46.28 Aligned_cols=60 Identities=30% Similarity=0.539 Sum_probs=39.9
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecc
Q 017455 174 LDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGN 237 (371)
Q Consensus 174 ~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~ 237 (371)
+.+.+....+.+|+|+.++++.|.++++|+.|+|+ +....+..++++.|... -...|+|+
T Consensus 80 i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSA---GlgdvI~~vL~q~~~~~-~Nv~VvSN 139 (246)
T PF05822_consen 80 IEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSA---GLGDVIEEVLRQAGVFH-PNVKVVSN 139 (246)
T ss_dssp HHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEE---EEHHHHHHHHHHTT--B-TTEEEEEE
T ss_pred HHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeC---CcHHHHHHHHHHcCCCC-CCeEEEee
Confidence 44445455688999999999999999999999999 55788999999886532 23445554
No 206
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=89.47 E-value=0.37 Score=40.27 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=12.5
Q ss_pred eEEEEecCCccccc
Q 017455 85 LAVLLEVDGVLVDA 98 (371)
Q Consensus 85 kaviFD~DGTL~d~ 98 (371)
|+++||+||||++.
T Consensus 1 k~~~~D~dgtL~~~ 14 (132)
T TIGR01662 1 KGVVLDLDGTLTDD 14 (132)
T ss_pred CEEEEeCCCceecC
Confidence 68999999999963
No 207
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=88.65 E-value=0.26 Score=41.91 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=21.0
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
+.+++.+.|+.++++|+.++++|+..
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 55677777888888999999999853
No 208
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=88.50 E-value=0.53 Score=51.23 Aligned_cols=137 Identities=12% Similarity=0.139 Sum_probs=77.6
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhH---------------------
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEV--------------------- 240 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~--------------------- 240 (371)
..|+.|+.+..|+.|.+.+++++.+|+ ...-.+-+..+.+|+.+---.++.-.++.
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITG---DnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~ 749 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITG---DNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPG 749 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeC---CCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeecCCCC
Confidence 478999999999999999999999998 33444555566666632211111111110
Q ss_pred -----HhhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCC-CCchhHHHHHHHHHHHHHcC
Q 017455 241 -----ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAE 314 (371)
Q Consensus 241 -----~~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p-~~~~~~~~~~~~~~a~~~lg 314 (371)
-...++..++|++..+- .+-+..-..-|+..+|.- +|.-++.+| .-++.+|
T Consensus 750 ~~~~~l~~~~dlcitG~~l~~l-------------------~~~~~l~~l~~hv~VfARvaP~QKE~ii----~tlK~~G 806 (1160)
T KOG0209|consen 750 KKKTLLAETHDLCITGSALDHL-------------------QATDQLRRLIPHVWVFARVAPKQKEFII----TTLKKLG 806 (1160)
T ss_pred ccchhhhhhhhhhcchhHHHHH-------------------hhhHHHHHhhhheeEEEeeChhhHHHHH----HHHHhcC
Confidence 01112333334333111 011111122344444421 222222232 2234444
Q ss_pred CCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 315 KPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 315 v~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
-.++|-||+-||+-|.+.|...+.+++.+.
T Consensus 807 ---y~TLMCGDGTNDVGALK~AhVGVALL~~~~ 836 (1160)
T KOG0209|consen 807 ---YVTLMCGDGTNDVGALKQAHVGVALLNNPE 836 (1160)
T ss_pred ---eEEEEecCCCcchhhhhhcccceehhcCCh
Confidence 568999999999999999999999988765
No 209
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=87.61 E-value=0.82 Score=43.91 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=25.8
Q ss_pred CCCceEEEEecCCcccccccc-CcHHHHHHHHHHcCCCC
Q 017455 81 PPRDLAVLLEVDGVLVDAYRF-GNRQAFNVAFQKLGLDC 118 (371)
Q Consensus 81 ~~~~kaviFD~DGTL~d~~~~-~~~~a~~~~~~~~g~~~ 118 (371)
.+.+++++||+||||++.... .-...+-+.+++.|++.
T Consensus 5 ~~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~ 43 (269)
T COG0647 5 MDKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPV 43 (269)
T ss_pred hhhcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeE
Confidence 456899999999999976543 22334445566677653
No 210
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=87.33 E-value=5.2 Score=38.39 Aligned_cols=43 Identities=5% Similarity=-0.116 Sum_probs=31.3
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHc---CCcEEEECCCCC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI---GMPCVVMRSRCI 348 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~a---Gm~~v~v~~~~~ 348 (371)
+..++++......-.++.||-..|=.+-..+ +-.+|.+..+.+
T Consensus 187 ~~~i~~~~~~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~~t 232 (266)
T COG1877 187 IKYIMDELPFDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGVGST 232 (266)
T ss_pred HHHHHhcCCCCCCcceecCCCCccHHHHHhhccCCCceEEecCCcc
Confidence 6777888877777799999998875555555 367777766644
No 211
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.74 E-value=1 Score=42.73 Aligned_cols=41 Identities=27% Similarity=0.399 Sum_probs=32.0
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcC
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLG 225 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lg 225 (371)
...++.|+.++.+.|+++++|+.|.|.+ .-..+..++.+..
T Consensus 136 ~i~lReg~~~ff~~L~~~~IP~~iFSAG---igdiiEev~~q~~ 176 (298)
T KOG3128|consen 136 NIALREGYEEFFEALQAHEIPLLIFSAG---IGDIIEEVTRQKL 176 (298)
T ss_pred hHHHHHHHHHHHHHHHhCCCceEEEecc---hHHHHHHHHHHHh
Confidence 3557899999999999999999999994 3555665555443
No 212
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=86.52 E-value=5.3 Score=38.09 Aligned_cols=33 Identities=6% Similarity=-0.005 Sum_probs=26.9
Q ss_pred HHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 310 AEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 310 ~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
++.++-. ||++|....++.|. .+.+++.|..+.
T Consensus 229 L~~~~ph----IFFDDQ~~H~~~a~-~~vps~hVP~gv 261 (264)
T PF06189_consen 229 LKAFRPH----IFFDDQDGHLESAS-KVVPSGHVPYGV 261 (264)
T ss_pred HHhhCCC----EeecCchhhhhHhh-cCCCEEeccCCc
Confidence 4455443 99999999999998 899999998764
No 213
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=86.35 E-value=5.7 Score=38.61 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=35.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
-.+.||+.++++.|++.|-.+.++||.+....+......+.+|+.+
T Consensus 37 ~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~ 82 (306)
T KOG2882|consen 37 EKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS 82 (306)
T ss_pred CCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc
Confidence 4589999999999999999999999976433444445566777765
No 214
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=86.29 E-value=0.37 Score=41.97 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=13.4
Q ss_pred ceEEEEecCCccccc
Q 017455 84 DLAVLLEVDGVLVDA 98 (371)
Q Consensus 84 ~kaviFD~DGTL~d~ 98 (371)
+|+|+||+||||++.
T Consensus 1 ~~~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 1 IRLLILDVDGVLTDG 15 (154)
T ss_pred CeEEEEeCceeEEcC
Confidence 479999999999983
No 215
>PLN02423 phosphomannomutase
Probab=86.18 E-value=0.74 Score=43.31 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=20.3
Q ss_pred CCceEEE-EecCCccccccccCcHHHHHHHHHH
Q 017455 82 PRDLAVL-LEVDGVLVDAYRFGNRQAFNVAFQK 113 (371)
Q Consensus 82 ~~~kavi-FD~DGTL~d~~~~~~~~a~~~~~~~ 113 (371)
.++|+++ ||+||||++.... ..+...+++++
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~~-i~~~~~~ai~~ 35 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRKE-ATPEMLEFMKE 35 (245)
T ss_pred CccceEEEEeccCCCcCCCCc-CCHHHHHHHHH
Confidence 3566666 9999999987653 34444444443
No 216
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=86.04 E-value=1.3 Score=44.38 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=16.3
Q ss_pred CCceEEEEecCCccccccc
Q 017455 82 PRDLAVLLEVDGVLVDAYR 100 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~ 100 (371)
..-|.+.||+||||+++..
T Consensus 73 ~~~K~i~FD~dgtlI~t~s 91 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKS 91 (422)
T ss_pred CCcceEEEecCCceeecCC
Confidence 3468999999999999876
No 217
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=85.81 E-value=3.6 Score=35.05 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=46.9
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 258 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~ 258 (371)
-.+++++..|.+|+++|+.+++.|++.. ..++...|+.+.+...+-.. .. ...|.-+..|++..-|+
T Consensus 44 ~fY~Di~rIL~dLk~~GVtl~~ASRt~a--p~iA~q~L~~fkvk~~Gvlk--ps----~e~ft~~~~g~gsklgh 110 (144)
T KOG4549|consen 44 IFYDDIRRILVDLKKLGVTLIHASRTMA--PQIASQGLETFKVKQTGVLK--PS----LEEFTFEAVGDGSKLGH 110 (144)
T ss_pred eeccchhHHHHHHHhcCcEEEEecCCCC--HHHHHHHHHHhccCcccccc--hh----hhcCceeeecCcccchh
Confidence 3788999999999999999999999773 57888889988776443221 11 11244455566665553
No 218
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=85.38 E-value=1.6 Score=47.61 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=30.0
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcC--CcEEEECC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIG--MPCVVMRS 345 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aG--m~~v~v~~ 345 (371)
++.+++ +++++.+++|||+.||+.|.+.++ ..+|.+..
T Consensus 662 l~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~ 701 (726)
T PRK14501 662 VRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGP 701 (726)
T ss_pred HHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECC
Confidence 566666 788999999999999999999984 34555554
No 219
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=85.15 E-value=2.5 Score=43.10 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCCCcEE-EEeCCHhhHHHHHHcCCc
Q 017455 305 ALRAGAEYAEKPVRNCF-LIAGSQSGVAGAQRIGMP 339 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~I-~IgDs~~Di~aA~~aGm~ 339 (371)
||+.-++.++..++--. -||....|+.+=+.+|++
T Consensus 481 ayLndl~slf~e~~PFyAGFGNriTDvisY~~vgIp 516 (580)
T COG5083 481 AYLNDLKSLFIEFDPFYAGFGNRITDVISYSNVGIP 516 (580)
T ss_pred HHHHHHHHhhCcCChhhccccccchhheeeccccCC
Confidence 46666777777776544 589999999999999996
No 220
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=84.60 E-value=5 Score=38.04 Aligned_cols=48 Identities=15% Similarity=0.063 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCCCCCccc
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPV 353 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~~~l 353 (371)
|+.+.+++|-+...-++|||+..-=.||+..+|+++-+.........+
T Consensus 219 Fe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I~~h~Dl~~l~ 266 (274)
T TIGR01658 219 FKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFVKIDLHPDSSHRF 266 (274)
T ss_pred HHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeEEeecCCCHHHhC
Confidence 999999999888889999999999999999999999997544433333
No 221
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=83.92 E-value=0.57 Score=42.01 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.6
Q ss_pred CceEEEEecCCccccc
Q 017455 83 RDLAVLLEVDGVLVDA 98 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~ 98 (371)
.+|+|+||+||||++.
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 4899999999999985
No 222
>PTZ00174 phosphomannomutase; Provisional
Probab=83.91 E-value=1.1 Score=42.08 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=24.7
Q ss_pred CCCceEEEEecCCccccccccCcHHHHHHHHHH---cCCC
Q 017455 81 PPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQK---LGLD 117 (371)
Q Consensus 81 ~~~~kaviFD~DGTL~d~~~~~~~~a~~~~~~~---~g~~ 117 (371)
.|.+|+|+||+||||++.... ..+...+++++ .|+.
T Consensus 2 ~~~~klia~DlDGTLL~~~~~-is~~~~~ai~~l~~~Gi~ 40 (247)
T PTZ00174 2 EMKKTILLFDVDGTLTKPRNP-ITQEMKDTLAKLKSKGFK 40 (247)
T ss_pred CCCCeEEEEECcCCCcCCCCC-CCHHHHHHHHHHHHCCCE
Confidence 367899999999999988653 33444444433 4554
No 223
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=83.50 E-value=0.62 Score=41.52 Aligned_cols=18 Identities=39% Similarity=0.553 Sum_probs=15.6
Q ss_pred CCceEEEEecCCcccccc
Q 017455 82 PRDLAVLLEVDGVLVDAY 99 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~ 99 (371)
..+|+++||+||||.|..
T Consensus 5 ~~i~~~v~d~dGv~tdg~ 22 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDGR 22 (169)
T ss_pred ccCeEEEEeCceeeECCe
Confidence 348999999999999964
No 224
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=83.42 E-value=2 Score=40.80 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=35.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f 230 (371)
+.|++.++|+.|+++|++++++|+. +...+..+++.+|+..++
T Consensus 22 ~~~~~~~ai~~l~~~Gi~~~iaTgR---~~~~~~~~~~~l~l~~~~ 64 (273)
T PRK00192 22 SYEPAKPALKALKEKGIPVIPCTSK---TAAEVEVLRKELGLEDPF 64 (273)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEcCC---CHHHHHHHHHHcCCCCCE
Confidence 3456788899999999999999994 467788889999987544
No 225
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=83.28 E-value=0.65 Score=39.11 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=13.4
Q ss_pred eEEEEecCCcccccc
Q 017455 85 LAVLLEVDGVLVDAY 99 (371)
Q Consensus 85 kaviFD~DGTL~d~~ 99 (371)
|+++||+||||++..
T Consensus 1 kli~~DlD~Tl~~~~ 15 (128)
T TIGR01681 1 KVIVFDLDNTLWTGE 15 (128)
T ss_pred CEEEEeCCCCCCCCC
Confidence 689999999999874
No 226
>PLN02580 trehalose-phosphatase
Probab=82.99 E-value=2.7 Score=42.42 Aligned_cols=31 Identities=10% Similarity=-0.027 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCCCCc-E--EEEeCCHhhHHHHHH
Q 017455 305 ALRAGAEYAEKPVRN-C--FLIAGSQSGVAGAQR 335 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e-~--I~IgDs~~Di~aA~~ 335 (371)
|++..++.+|++..+ + |+|||..+|..|.+.
T Consensus 305 Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~ 338 (384)
T PLN02580 305 AVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKV 338 (384)
T ss_pred HHHHHHHhcCCCcccceeEEEECCCchHHHHHHh
Confidence 478889999988764 3 899999999999886
No 227
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=82.10 E-value=1.8 Score=46.21 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=46.7
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc-ccchheeecchh
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE-RISKIKIVGNEE 239 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~-~~f~~~i~~~~~ 239 (371)
+++||++.+||+.+.+. +.+.|+|-++ ..++..+.+.++.+ .+|...|++.++
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~---R~YA~~i~~liDP~~~lF~dRIisrde 253 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGT---RDYALEIAKLIDPEGKYFGDRIISRDE 253 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccc---hHHHHHHHHHhCCCCccccceEEEecC
Confidence 67999999999999977 9999999955 78999999999986 888888888766
No 228
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=81.93 E-value=0.73 Score=40.63 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=36.6
Q ss_pred CCCceEEEEecCCcccccccc-----CcHHHHH-------HHHHHcCCCCCCCChHHHHHHHHhhcCChHHHHHHHHHHc
Q 017455 81 PPRDLAVLLEVDGVLVDAYRF-----GNRQAFN-------VAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRI 148 (371)
Q Consensus 81 ~~~~kaviFD~DGTL~d~~~~-----~~~~a~~-------~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (371)
...+|.+|||+||||.|..-+ ....+|+ +++.+.|+.. ....|+...+.+.-..++
T Consensus 5 a~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~v------------AIITGr~s~ive~Ra~~L 72 (170)
T COG1778 5 AKNIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKV------------AIITGRDSPIVEKRAKDL 72 (170)
T ss_pred hhhceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeE------------EEEeCCCCHHHHHHHHHc
Confidence 346899999999999986422 0112222 2444555542 234466666766777777
Q ss_pred CCCCC
Q 017455 149 GWPTS 153 (371)
Q Consensus 149 g~~~~ 153 (371)
|++.-
T Consensus 73 GI~~~ 77 (170)
T COG1778 73 GIKHL 77 (170)
T ss_pred CCcee
Confidence 77643
No 229
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=80.85 E-value=4.6 Score=35.89 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=24.1
Q ss_pred HHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCC
Q 017455 310 AEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 310 ~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~ 347 (371)
+..-|++ ++||++.. ...|++.|++++++.++.
T Consensus 121 ~~~~G~~----viVGg~~~-~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 121 AKAEGVD----VIVGGGVV-CRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHTT------EEEESHHH-HHHHHHTTSEEEESS--H
T ss_pred HHHcCCc----EEECCHHH-HHHHHHcCCcEEEEEecH
Confidence 4455766 89999975 788999999999998654
No 230
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=80.09 E-value=9.4 Score=37.37 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=33.0
Q ss_pred CCccHHHHHHHHHHC----CCcEEEEcCCCCCCc-HHHHHHHHHcCcc
Q 017455 185 LRPGVEDFVDDAYNE----GIPLIVLTAYGKSGD-RIARSVVEKLGSE 227 (371)
Q Consensus 185 ~~pgv~elL~~L~~~----Gi~v~IvTn~~~~~~-~~~~~~l~~lgl~ 227 (371)
+.||+.++++.|+.+ |+++.++||.+.... ..+..+.+++|+.
T Consensus 17 ~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 17 PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred ccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 689999999999998 999999999653223 3345555788875
No 231
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=79.33 E-value=1.8 Score=38.67 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=17.2
Q ss_pred CCCceEEEEecCCcccccccc
Q 017455 81 PPRDLAVLLEVDGVLVDAYRF 101 (371)
Q Consensus 81 ~~~~kaviFD~DGTL~d~~~~ 101 (371)
...+|+|+||.|+||+..+..
T Consensus 38 ~~Gik~li~DkDNTL~~~~~~ 58 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYED 58 (168)
T ss_pred hcCceEEEEcCCCCCCCCCcC
Confidence 456899999999999976544
No 232
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=77.37 E-value=20 Score=38.88 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh-cC-CCCCCccHHHHHHHHHHCCCcEEEEcC
Q 017455 158 EKKAFVKNVLQEKKNALDEFLA-SK-DAPLRPGVEDFVDDAYNEGIPLIVLTA 208 (371)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~l~-~~-~~~~~pgv~elL~~L~~~Gi~v~IvTn 208 (371)
++...+..+.+...+.=.+++- .+ +-++..+|+-.|+.||++|+++..+|+
T Consensus 630 dR~~~ma~vv~~~LE~dlelL~LTGVEDkLQ~dVk~tLElLRNAgikiWMLTG 682 (1051)
T KOG0210|consen 630 DRDQKMANVVERYLERDLELLGLTGVEDKLQDDVKPTLELLRNAGIKIWMLTG 682 (1051)
T ss_pred hHHHHHHHHHHHHHHhhhHHhcccChHHHHhhhhHhHHHHHhhcCcEEEEEcC
Confidence 3444444444433333333431 11 345788888999999999999999997
No 233
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=77.05 E-value=4.2 Score=41.07 Aligned_cols=124 Identities=10% Similarity=-0.041 Sum_probs=72.5
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHH---cCccccchheeecchhHHhhhhcccccccccc-CCchhHHHHH
Q 017455 190 EDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK---LGSERISKIKIVGNEEVERSLYGQFVLGKGIS-SGVDEQLATE 265 (371)
Q Consensus 190 ~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~---lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~-~~~~~~~~~~ 265 (371)
..+|..++..|-++-++||+. -.++...... .++..+|+++++.+.--.. ++++.+.-+-.. .|+.
T Consensus 204 v~~l~~~r~sGKk~fl~Tns~---~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~f-f~e~~vlreV~t~~g~l------ 273 (424)
T KOG2469|consen 204 VPLLSMLRDSGKKTFLHTNSD---WDYTDIFMAFHYGFDWETYFDLVETRAAKPGF-FHEGTVLREVEPQEGLL------ 273 (424)
T ss_pred ccchHHHHhhccceEEeeccc---cchhhHHHHHHhCCCcceeEEEEEEeccCCcc-ccccceeeeeccccccc------
Confidence 338999999999999999954 4444444432 4788999998876522111 112222111110 0000
Q ss_pred HHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHh-hH-HHHHHcCCcEEEE
Q 017455 266 ARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQS-GV-AGAQRIGMPCVVM 343 (371)
Q Consensus 266 ~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~-Di-~aA~~aGm~~v~v 343 (371)
-+....+|.-....++.-. ...+++.+++.-.+.++|||+.. || ..-+.-|+.+++|
T Consensus 274 --------------~~g~~~~p~e~~~~ySggs-------~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv 332 (424)
T KOG2469|consen 274 --------------KNGDNTGPLEQGGVYSGGS-------LKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLV 332 (424)
T ss_pred --------------cccccCCcchhcccCCcch-------HHHHHHHhcccccceeecccceeeeEEecceecceEEEEE
Confidence 0000012222222233332 67778999999999999999987 54 4446779988887
Q ss_pred C
Q 017455 344 R 344 (371)
Q Consensus 344 ~ 344 (371)
-
T Consensus 333 ~ 333 (424)
T KOG2469|consen 333 A 333 (424)
T ss_pred e
Confidence 5
No 234
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=76.98 E-value=4.9 Score=36.48 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
..+.|...+.|+.|+++|++++++|+.. ...+..+.+.+++..+
T Consensus 17 ~~i~~~~~~~i~~l~~~g~~~~~~TGR~---~~~~~~~~~~l~~~~~ 60 (215)
T TIGR01487 17 RMISERAIEAIRKAEKKGIPVSLVTGNT---VPFARALAVLIGTSGP 60 (215)
T ss_pred cccCHHHHHHHHHHHHCCCEEEEEcCCc---chhHHHHHHHhCCCCc
Confidence 3477899999999999999999999953 5667788888888643
No 235
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=76.88 E-value=4.7 Score=36.68 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 188 GVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 188 gv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
...++|+.|+++|++++++||. +...+..+++.+++.
T Consensus 20 ~~~~~l~~l~~~gi~~~i~TgR---~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 20 PAAPWLTRLQEAGIPVILCTSK---TAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHHCCCeEEEEcCC---CHHHHHHHHHHcCCC
Confidence 3778999999999999999994 477888899999986
No 236
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=76.70 E-value=2.3 Score=36.89 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=33.1
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCC---CCCcHHHHHHHHHcCccccchh
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYG---KSGDRIARSVVEKLGSERISKI 232 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~---~~~~~~~~~~l~~lgl~~~f~~ 232 (371)
+...|++++.+++|-+. +.|+|+|... ++...-...+.+.++.-++..+
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~ 118 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNI 118 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhE
Confidence 56899999999999987 9999999853 1223334445555555444444
No 237
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=76.55 E-value=5 Score=37.20 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=34.1
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
..|+..++|+.|+++|++++++|+.+ ...+..+++.+|+..
T Consensus 16 ~~~~~~~ai~~l~~~G~~~vi~TgR~---~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 16 EPGPAREALEELKDLGFPIVFVSSKT---RAEQEYYREELGVEP 56 (225)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCCC---HHHHHHHHHHcCCCC
Confidence 34678999999999999999999954 566777889999865
No 238
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=75.81 E-value=13 Score=36.23 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=32.7
Q ss_pred cCCCCCCccHHHHHHHHHHCC-CcEEEEcCCCCCCcHHHHHHHHHcC
Q 017455 180 SKDAPLRPGVEDFVDDAYNEG-IPLIVLTAYGKSGDRIARSVVEKLG 225 (371)
Q Consensus 180 ~~~~~~~pgv~elL~~L~~~G-i~v~IvTn~~~~~~~~~~~~l~~lg 225 (371)
++...++|..-++|+.+++.| +++.|+||++. ..+++.+.
T Consensus 88 ~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl------pdv~~~L~ 128 (296)
T COG0731 88 SGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL------PDVLEELK 128 (296)
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEeCCCh------HHHHHHhc
Confidence 466779999999999999999 79999999752 45566655
No 239
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=74.51 E-value=3.6 Score=36.73 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=26.8
Q ss_pred CCceEEEEecCCcccccccc---CcHHHHHHHHHHcCCC
Q 017455 82 PRDLAVLLEVDGVLVDAYRF---GNRQAFNVAFQKLGLD 117 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~~---~~~~a~~~~~~~~g~~ 117 (371)
..+|+|++|+|.||+.+... ....+|..-++.-|+.
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~ 64 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIK 64 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCE
Confidence 56899999999999976543 2446677777777775
No 240
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=74.22 E-value=6.2 Score=35.96 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=35.4
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
.+.|...+.|.+|+++|++++++|+.. ...+..++..+|+..+
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR~---~~~~~~~~~~l~~~~~ 62 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGNV---LCFARAAAKLIGTSGP 62 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCCc---hHHHHHHHHHhCCCCc
Confidence 467889999999999999999999943 5667777888888643
No 241
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=74.08 E-value=16 Score=40.50 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=37.1
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
-|.||||.+.++.++.+|++|-.+|+ +.-..++.+....|+.
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTG---DNI~TAkAIA~eCGIL 687 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTG---DNINTAKAIARECGIL 687 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeC---CcHHHHHHHHHHcccc
Confidence 46899999999999999999999999 5567788888888984
No 242
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=73.97 E-value=22 Score=33.76 Aligned_cols=101 Identities=24% Similarity=0.272 Sum_probs=65.8
Q ss_pred CCCCCccHHHHHHHHHHC---CCcEE-EEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCC
Q 017455 182 DAPLRPGVEDFVDDAYNE---GIPLI-VLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSG 257 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~---Gi~v~-IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~ 257 (371)
.-.+.|+..++++..+.. |+.+. ++++ +-..-+.+..+|.+-... .|..+..|
T Consensus 102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~d-----d~~~ar~l~~~G~~~vmP------------------lg~pIGsg 158 (248)
T cd04728 102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTD-----DPVLAKRLEDAGCAAVMP------------------LGSPIGSG 158 (248)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEEEeCC-----CHHHHHHHHHcCCCEeCC------------------CCcCCCCC
Confidence 345899999999998887 99999 7776 455566677777654311 12222222
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCC---HhhHHHHH
Q 017455 258 VDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQ 334 (371)
Q Consensus 258 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs---~~Di~aA~ 334 (371)
.- --+|++ ++.+.+..++ .|++|.+ +.|+..|.
T Consensus 159 ~G--------------------------i~~~~~--------------I~~I~e~~~v----pVI~egGI~tpeda~~Am 194 (248)
T cd04728 159 QG--------------------------LLNPYN--------------LRIIIERADV----PVIVDAGIGTPSDAAQAM 194 (248)
T ss_pred CC--------------------------CCCHHH--------------HHHHHHhCCC----cEEEeCCCCCHHHHHHHH
Confidence 10 011223 5555665443 3777755 56999999
Q ss_pred HcCCcEEEECCCCCC
Q 017455 335 RIGMPCVVMRSRCIT 349 (371)
Q Consensus 335 ~aGm~~v~v~~~~~~ 349 (371)
+.|...|+++++-..
T Consensus 195 elGAdgVlV~SAIt~ 209 (248)
T cd04728 195 ELGADAVLLNTAIAK 209 (248)
T ss_pred HcCCCEEEEChHhcC
Confidence 999999999987664
No 243
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=73.84 E-value=1.7 Score=37.55 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=13.8
Q ss_pred eEEEEecCCcccccccc
Q 017455 85 LAVLLEVDGVLVDAYRF 101 (371)
Q Consensus 85 kaviFD~DGTL~d~~~~ 101 (371)
|+++||+||||+.....
T Consensus 1 k~LVlDLD~TLv~~~~~ 17 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSK 17 (159)
T ss_dssp EEEEEE-CTTTEEEESS
T ss_pred CEEEEeCCCcEEEEeec
Confidence 68999999999987754
No 244
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=73.61 E-value=3.1 Score=36.71 Aligned_cols=13 Identities=31% Similarity=0.468 Sum_probs=11.9
Q ss_pred eEEEEecCCcccc
Q 017455 85 LAVLLEVDGVLVD 97 (371)
Q Consensus 85 kaviFD~DGTL~d 97 (371)
|+++||.||||+.
T Consensus 2 ~~~~~D~Dgtl~~ 14 (176)
T TIGR00213 2 KAIFLDRDGTINI 14 (176)
T ss_pred CEEEEeCCCCEeC
Confidence 6899999999995
No 245
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.07 E-value=16 Score=37.89 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=64.2
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHH
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 263 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~ 263 (371)
+++-..+.+|..|+++|+-++|+|- +.+..++..+.+.+-- |+-.++... + ...
T Consensus 255 ~~fk~fQ~~Ik~l~kqGVlLav~SK---N~~~da~evF~khp~M------iLkeedfa~-----~------~iN------ 308 (574)
T COG3882 255 EAFKTFQNFIKGLKKQGVLLAVCSK---NTEKDAKEVFRKHPDM------ILKEEDFAV-----F------QIN------ 308 (574)
T ss_pred hhHHHHHHHHHHHHhccEEEEEecC---CchhhHHHHHhhCCCe------EeeHhhhhh-----h------eec------
Confidence 4566678899999999999999997 4467777776665321 111111100 0 000
Q ss_pred HHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCC
Q 017455 264 TEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 338 (371)
Q Consensus 264 ~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm 338 (371)
|-|..+. ++++++++|+-.+..+||+|++...+--++-+=
T Consensus 309 ----------------------------W~~K~eN-------irkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~ 348 (574)
T COG3882 309 ----------------------------WDPKAEN-------IRKIAKKLNLGLDSMVFIDDNPAERELVKRELP 348 (574)
T ss_pred ----------------------------CCcchhh-------HHHHHHHhCCCccceEEecCCHHHHHHHHhcCc
Confidence 2233333 889999999999999999999998877777664
No 246
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=72.94 E-value=6.7 Score=36.56 Aligned_cols=41 Identities=15% Similarity=0.388 Sum_probs=33.6
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
+.+...+.|+.|+++|++++++|+.. ...+..+++.+++..
T Consensus 17 i~~~~~~~i~~l~~~G~~~~iaTGR~---~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 17 ISPSTKEALAKLREKGIKVVLATGRP---YKEVKNILKELGLDT 57 (256)
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeCCC---HHHHHHHHHHcCCCC
Confidence 55677889999999999999999953 566777888888763
No 247
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=72.86 E-value=1.9 Score=37.94 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=11.9
Q ss_pred eEEEEecCCccccccc
Q 017455 85 LAVLLEVDGVLVDAYR 100 (371)
Q Consensus 85 kaviFD~DGTL~d~~~ 100 (371)
|.++||+||||+.+..
T Consensus 1 Kia~fD~DgTLi~~~s 16 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKS 16 (159)
T ss_dssp SEEEE-SCTTTEE-ST
T ss_pred CEEEEeCCCCccCCCC
Confidence 5789999999998754
No 248
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=72.69 E-value=7.2 Score=36.54 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=37.8
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
..+.|...+.|++++++|++++++|+. +-..+..+++.+++..
T Consensus 19 ~~i~~~~~~al~~~~~~g~~v~iaTGR---~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 19 KTISPETKEALARLREKGVKVVLATGR---PLPDVLSILEELGLDG 61 (264)
T ss_pred CccCHHHHHHHHHHHHCCCEEEEECCC---ChHHHHHHHHHcCCCc
Confidence 348889999999999999999999994 4678899999999986
No 249
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=71.91 E-value=8 Score=42.28 Aligned_cols=35 Identities=3% Similarity=0.028 Sum_probs=26.5
Q ss_pred CCccHHHHHHHHHH-CCCcEEEEcCCCCCCcHHHHHHHH
Q 017455 185 LRPGVEDFVDDAYN-EGIPLIVLTAYGKSGDRIARSVVE 222 (371)
Q Consensus 185 ~~pgv~elL~~L~~-~Gi~v~IvTn~~~~~~~~~~~~l~ 222 (371)
+.+.+.+.|+.|.+ .|+.++|+|+.+ ...+...+.
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR~---~~~l~~~~~ 550 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGRD---RDTLERWFG 550 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCCC---HHHHHHHhC
Confidence 56899999999999 499999999953 444444443
No 250
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=71.61 E-value=7.3 Score=36.73 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=33.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
+.|...+.|++|+++|++++++|+. +...+..+++.+++..+
T Consensus 20 i~~~~~~ai~~l~~~G~~~~iaTGR---~~~~~~~~~~~l~~~~~ 61 (272)
T PRK15126 20 LGEKTLSTLARLRERDITLTFATGR---HVLEMQHILGALSLDAY 61 (272)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCC---CHHHHHHHHHHcCCCCc
Confidence 4455677889999999999999994 35667788888988643
No 251
>PRK00208 thiG thiazole synthase; Reviewed
Probab=71.57 E-value=27 Score=33.16 Aligned_cols=101 Identities=25% Similarity=0.312 Sum_probs=65.9
Q ss_pred CCCCCccHHHHHHHHHHC---CCcEE-EEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCC
Q 017455 182 DAPLRPGVEDFVDDAYNE---GIPLI-VLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSG 257 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~---Gi~v~-IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~ 257 (371)
.-.+.|+..++++..+.. |+.+. ++++ +-..-..+..+|.+-... .|..+..|
T Consensus 102 ~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~-----d~~~ak~l~~~G~~~vmP------------------lg~pIGsg 158 (250)
T PRK00208 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTD-----DPVLAKRLEEAGCAAVMP------------------LGAPIGSG 158 (250)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCEEEEEeCC-----CHHHHHHHHHcCCCEeCC------------------CCcCCCCC
Confidence 344789999999988887 99999 7777 455566677777654321 12222222
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCC---HhhHHHHH
Q 017455 258 VDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQ 334 (371)
Q Consensus 258 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs---~~Di~aA~ 334 (371)
.- --+|++ ++.+.+..+++ |++|.+ +.|+..|.
T Consensus 159 ~g--------------------------i~~~~~--------------i~~i~e~~~vp----VIveaGI~tpeda~~Am 194 (250)
T PRK00208 159 LG--------------------------LLNPYN--------------LRIIIEQADVP----VIVDAGIGTPSDAAQAM 194 (250)
T ss_pred CC--------------------------CCCHHH--------------HHHHHHhcCCe----EEEeCCCCCHHHHHHHH
Confidence 10 001222 55556654443 777755 46999999
Q ss_pred HcCCcEEEECCCCCC
Q 017455 335 RIGMPCVVMRSRCIT 349 (371)
Q Consensus 335 ~aGm~~v~v~~~~~~ 349 (371)
+.|...|+++++-..
T Consensus 195 elGAdgVlV~SAItk 209 (250)
T PRK00208 195 ELGADAVLLNTAIAV 209 (250)
T ss_pred HcCCCEEEEChHhhC
Confidence 999999999988664
No 252
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=71.11 E-value=29 Score=34.26 Aligned_cols=101 Identities=24% Similarity=0.295 Sum_probs=65.6
Q ss_pred CCCCCccHHHHHHHHHHC---CCcE-EEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCC
Q 017455 182 DAPLRPGVEDFVDDAYNE---GIPL-IVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSG 257 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~---Gi~v-~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~ 257 (371)
.-.+.|+..++++.++.. |+.+ .++++ +-..-+.+..+|..-... .+..+..|
T Consensus 176 ~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~-----d~~~a~~l~~~g~~avmP------------------l~~pIGsg 232 (326)
T PRK11840 176 AKTLYPDMVETLKATEILVKEGFQVMVYCSD-----DPIAAKRLEDAGAVAVMP------------------LGAPIGSG 232 (326)
T ss_pred CCCcccCHHHHHHHHHHHHHCCCEEEEEeCC-----CHHHHHHHHhcCCEEEee------------------ccccccCC
Confidence 345899999999998887 9999 66666 455666677776631111 12222222
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCC---HhhHHHHH
Q 017455 258 VDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQ 334 (371)
Q Consensus 258 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs---~~Di~aA~ 334 (371)
.- . -+|+. ++...+...++ |++|-+ .+|+..|.
T Consensus 233 ~g------------------------v--~~p~~--------------i~~~~e~~~vp----VivdAGIg~~sda~~Am 268 (326)
T PRK11840 233 LG------------------------I--QNPYT--------------IRLIVEGATVP----VLVDAGVGTASDAAVAM 268 (326)
T ss_pred CC------------------------C--CCHHH--------------HHHHHHcCCCc----EEEeCCCCCHHHHHHHH
Confidence 10 0 13333 66667764443 778755 57999999
Q ss_pred HcCCcEEEECCCCCC
Q 017455 335 RIGMPCVVMRSRCIT 349 (371)
Q Consensus 335 ~aGm~~v~v~~~~~~ 349 (371)
+.|...|+++++-.+
T Consensus 269 elGadgVL~nSaIa~ 283 (326)
T PRK11840 269 ELGCDGVLMNTAIAE 283 (326)
T ss_pred HcCCCEEEEcceecc
Confidence 999999999987653
No 253
>PRK10976 putative hydrolase; Provisional
Probab=71.07 E-value=7.9 Score=36.25 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=35.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
.+.|...+.|.+++++|++++++|+.. ...+..+++.+++..+
T Consensus 19 ~is~~~~~ai~~l~~~G~~~~iaTGR~---~~~~~~~~~~l~~~~~ 61 (266)
T PRK10976 19 TLSPYAKETLKLLTARGIHFVFATGRH---HVDVGQIRDNLEIKSY 61 (266)
T ss_pred cCCHHHHHHHHHHHHCCCEEEEEcCCC---hHHHHHHHHhcCCCCe
Confidence 467788999999999999999999953 5566778888888643
No 254
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=71.05 E-value=9.9 Score=42.45 Aligned_cols=28 Identities=11% Similarity=-0.092 Sum_probs=24.7
Q ss_pred HHHcCCCCCcEEEEeCCHhhHHHHHHcC
Q 017455 310 AEYAEKPVRNCFLIAGSQSGVAGAQRIG 337 (371)
Q Consensus 310 ~~~lgv~p~e~I~IgDs~~Di~aA~~aG 337 (371)
++.+|..++.+++|||..+|..|-+.++
T Consensus 774 ~~~~g~~~d~vl~~GDD~nDedMF~~~~ 801 (854)
T PLN02205 774 MQERGMLPDFVLCIGDDRSDEDMFEVIT 801 (854)
T ss_pred HHhcCCCcccEEEEcCCccHHHHHHHhh
Confidence 3557999999999999999999988876
No 255
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=70.78 E-value=9.2 Score=35.86 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=31.5
Q ss_pred CccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
.|...+.|++|+++|++++++|+.. ...+..+++.+++..
T Consensus 22 ~~~~~~ai~~l~~~G~~~~iaTGR~---~~~~~~~~~~l~~~~ 61 (270)
T PRK10513 22 SPAVKQAIAAARAKGVNVVLTTGRP---YAGVHRYLKELHMEQ 61 (270)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCC---hHHHHHHHHHhCCCC
Confidence 3456678899999999999999943 566777888888753
No 256
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=70.69 E-value=31 Score=36.37 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=26.7
Q ss_pred HHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCC
Q 017455 309 GAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR 346 (371)
Q Consensus 309 a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~ 346 (371)
-++..|++ ++|||... ...|+++||+.|++.++
T Consensus 140 ~l~~~G~~----~viG~~~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 140 DLRARGIG----AVVGAGLI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHCCCC----EEECChHH-HHHHHHcCCceEEEecH
Confidence 35556776 88999965 67899999999999875
No 257
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=70.22 E-value=32 Score=32.78 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=25.1
Q ss_pred HHHcCCCCCcEEEEeCCHh------hHHHHHHcCCcEEEECCC
Q 017455 310 AEYAEKPVRNCFLIAGSQS------GVAGAQRIGMPCVVMRSR 346 (371)
Q Consensus 310 ~~~lgv~p~e~I~IgDs~~------Di~aA~~aGm~~v~v~~~ 346 (371)
+++++++ +|+-=||.. =+.+|.++|+++|++..+
T Consensus 192 l~q~~id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 192 LEQYRID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHhCCC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 5667764 444445544 399999999999999876
No 258
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=70.10 E-value=9.4 Score=36.92 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=44.7
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecch
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNE 238 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~ 238 (371)
..|.+.+-|.+|++.|.-+++=|-++ ...+..-++++++..+|+.+|.++.
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~---~eHV~~sl~~~~L~~~Fd~ii~~G~ 193 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGN---REHVRHSLKELKLEGYFDIIICGGN 193 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCC---HHHHHHHHHHhCCccccEEEEeCCc
Confidence 56899999999999999999999854 8899999999999999999776543
No 259
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=69.99 E-value=8.3 Score=36.03 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=31.3
Q ss_pred CccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
.|...+.|.+++++|++++++|+. +...+..+++.+++..
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR---~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGR---HHVAIHPFYQALALDT 61 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCC---ChHHHHHHHHhcCCCC
Confidence 445667888999999999999994 3566777888888764
No 260
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=69.84 E-value=2.7 Score=39.27 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=13.6
Q ss_pred CceEEEEecCCccccc
Q 017455 83 RDLAVLLEVDGVLVDA 98 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~ 98 (371)
+.++++||+||||++.
T Consensus 2 ~~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEI 17 (244)
T ss_pred CcEEEEEecCccccCC
Confidence 3468999999999975
No 261
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=69.15 E-value=9.7 Score=37.16 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=36.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f 230 (371)
..+-+.+.|+.|+++|++++++|+.+ ...+..+.+.+++..+|
T Consensus 19 ~~~~a~~aL~~Lk~~GI~vVlaTGRt---~~ev~~l~~~Lgl~~p~ 61 (302)
T PRK12702 19 SYGAARQALAALERRSIPLVLYSLRT---RAQLEHLCRQLRLEHPF 61 (302)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEcCCC---HHHHHHHHHHhCCCCeE
Confidence 56678999999999999999999954 66778888999987643
No 262
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=68.92 E-value=3.6 Score=38.02 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=16.4
Q ss_pred EEEEecCCccccccccCcHHHHHHHHH
Q 017455 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQ 112 (371)
Q Consensus 86 aviFD~DGTL~d~~~~~~~~a~~~~~~ 112 (371)
+|++|+||||++.... . ..+.++++
T Consensus 1 li~~DlDgTLl~~~~~-~-~~~~~~~~ 25 (236)
T TIGR02471 1 LIITDLDNTLLGDDEG-L-ASFVELLR 25 (236)
T ss_pred CeEEeccccccCCHHH-H-HHHHHHHH
Confidence 4789999999986543 3 33334443
No 263
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=68.36 E-value=9.7 Score=34.48 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=32.5
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
+.|...+.|..|+++|++++++|+.. ...+..+++.+|+..
T Consensus 16 i~~~~~~al~~l~~~Gi~~~~aTGR~---~~~~~~~~~~l~~~~ 56 (225)
T TIGR01482 16 INESALEAIRKAESVGIPVVLVTGNS---VQFARALAKLIGTPD 56 (225)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCc---hHHHHHHHHHhCCCC
Confidence 55677788999999999999999943 556677788888644
No 264
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=67.56 E-value=10 Score=35.43 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccc
Q 017455 187 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 187 pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~ 228 (371)
+...++|..|+++|++++++|+.. ...+..+++.+|+.+
T Consensus 19 ~~~~~~i~~l~~~g~~~~~~TgR~---~~~~~~~~~~~~~~~ 57 (256)
T TIGR01486 19 GPAKEVLERLQELGIPVIPCTSKT---AAEVEYLRKELGLED 57 (256)
T ss_pred hHHHHHHHHHHHCCCeEEEEcCCC---HHHHHHHHHHcCCCC
Confidence 357888999999999999999943 667788889998754
No 265
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=67.40 E-value=41 Score=32.86 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.5
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
..-++|.+.++++.++++|..+.++||+.
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~ 110 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNAL 110 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCce
Confidence 34478999999999999999999999965
No 266
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=65.89 E-value=13 Score=31.50 Aligned_cols=15 Identities=7% Similarity=0.217 Sum_probs=12.9
Q ss_pred ceEEEEecCCccccc
Q 017455 84 DLAVLLEVDGVLVDA 98 (371)
Q Consensus 84 ~kaviFD~DGTL~d~ 98 (371)
+|+|+||+||||+..
T Consensus 1 ~K~i~~DiDGTL~~~ 15 (126)
T TIGR01689 1 MKRLVMDLDNTITLT 15 (126)
T ss_pred CCEEEEeCCCCcccC
Confidence 479999999999754
No 267
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=63.69 E-value=6.7 Score=34.58 Aligned_cols=19 Identities=26% Similarity=0.174 Sum_probs=15.7
Q ss_pred CCceEEEEecCCccccccc
Q 017455 82 PRDLAVLLEVDGVLVDAYR 100 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d~~~ 100 (371)
..+++|++|+||||+....
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~ 41 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH 41 (170)
T ss_pred CCCCEEEEecCCccccCCC
Confidence 4578999999999996544
No 268
>PLN02580 trehalose-phosphatase
Probab=62.30 E-value=16 Score=36.89 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=12.6
Q ss_pred ceEEEEecCCcccccc
Q 017455 84 DLAVLLEVDGVLVDAY 99 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~ 99 (371)
-.+++||+||||.+..
T Consensus 119 ~~~LfLDyDGTLaPIv 134 (384)
T PLN02580 119 KIALFLDYDGTLSPIV 134 (384)
T ss_pred CeEEEEecCCccCCCC
Confidence 4588889999997654
No 269
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=62.00 E-value=9.3 Score=35.79 Aligned_cols=36 Identities=17% Similarity=0.416 Sum_probs=23.8
Q ss_pred CCceEEEEecCCcccc-ccccCcHHHHHHHHHHcCCC
Q 017455 82 PRDLAVLLEVDGVLVD-AYRFGNRQAFNVAFQKLGLD 117 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d-~~~~~~~~a~~~~~~~~g~~ 117 (371)
...++|+.|+||||++ ++.-+....|-.-+...|.+
T Consensus 5 ~~~~lIFtDlD~TLl~~~ye~~pA~pv~~el~d~G~~ 41 (274)
T COG3769 5 QMPLLIFTDLDGTLLPHSYEWQPAAPVLLELKDAGVP 41 (274)
T ss_pred ccceEEEEcccCcccCCCCCCCccchHHHHHHHcCCe
Confidence 4467999999999999 43322334455555666654
No 270
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=61.88 E-value=14 Score=34.86 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 187 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 187 pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
+-..+.|.+|+++|++++++|+. +...+..+++.+|++
T Consensus 27 ~~~~~ai~~l~~~Gi~~viaTGR---~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 27 QPAAPWLTRLREAQVPVILCSSK---TAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCC---CHHHHHHHHHHhCCC
Confidence 34556788999999999999994 367788889999985
No 271
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=61.14 E-value=83 Score=29.84 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=33.8
Q ss_pred CccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHh--hHHHHHHcCCcEEEEC
Q 017455 287 LSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQS--GVAGAQRIGMPCVVMR 344 (371)
Q Consensus 287 P~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~--Di~aA~~aGm~~v~v~ 344 (371)
|+|.. |-|.. -+..+...|+ -||+|+|.+. +..+.+..|+.-|.+.
T Consensus 69 PN~a~--PGP~~-------ARE~l~~~~i---P~IvI~D~p~~K~~d~l~~~g~GYIivk 116 (277)
T PRK00994 69 PNPAA--PGPKK-------AREILKAAGI---PCIVIGDAPGKKVKDAMEEQGLGYIIVK 116 (277)
T ss_pred CCCCC--CCchH-------HHHHHHhcCC---CEEEEcCCCccchHHHHHhcCCcEEEEe
Confidence 56555 44442 4556666776 5999999975 6789999999888875
No 272
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=60.67 E-value=62 Score=34.27 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=27.1
Q ss_pred HHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCC
Q 017455 308 AGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR 346 (371)
Q Consensus 308 ~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~ 346 (371)
.-++..|++ ++|||+.. ...|.++|+..+++.++
T Consensus 149 ~~lk~~G~~----~vvG~~~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 149 NELKANGIE----AVVGAGLI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred HHHHHCCCC----EEEcCchH-HHHHHHhCCceEEecCH
Confidence 335567776 88999775 78999999999999854
No 273
>PRK06769 hypothetical protein; Validated
Probab=60.45 E-value=9.9 Score=33.60 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=13.7
Q ss_pred CceEEEEecCCccccc
Q 017455 83 RDLAVLLEVDGVLVDA 98 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~ 98 (371)
.+|+++||.||||...
T Consensus 3 ~~~~~~~d~d~~~~~~ 18 (173)
T PRK06769 3 NIQAIFIDRDGTIGGD 18 (173)
T ss_pred CCcEEEEeCCCcccCC
Confidence 5899999999999644
No 274
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=59.42 E-value=8.1 Score=35.59 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=22.2
Q ss_pred ceEEEEecCCccccccccCcHHHHHHHHHHc
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKL 114 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~~~~~ 114 (371)
.-.++||+||||...... ....+.+.++++
T Consensus 11 ~~l~lfdvdgtLt~~r~~-~~~e~~~~l~~l 40 (252)
T KOG3189|consen 11 ETLCLFDVDGTLTPPRQK-VTPEMLEFLQKL 40 (252)
T ss_pred ceEEEEecCCcccccccc-CCHHHHHHHHHH
Confidence 348999999999987654 556666666653
No 275
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=59.41 E-value=5.7 Score=35.57 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=15.2
Q ss_pred ceEEEEecCCcccccccc
Q 017455 84 DLAVLLEVDGVLVDAYRF 101 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~ 101 (371)
+|+|+||+|+|+++-+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMI 19 (174)
T ss_pred CcEEEEeCCCCCcCcccc
Confidence 579999999999987654
No 276
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=58.95 E-value=13 Score=28.55 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=37.0
Q ss_pred CCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEE
Q 017455 294 SSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 341 (371)
Q Consensus 294 p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v 341 (371)
|...|..++ ++.++|.+++++..+-.|-+...+|..++.+|--..
T Consensus 23 pE~aPftAv---lkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvfl 67 (82)
T cd01766 23 PESTPFTAV---LKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFL 67 (82)
T ss_pred cccCchHHH---HHHHHHhcCCCccceeEEecCccccChhhcccceee
Confidence 556666666 999999999999998888887889999999985433
No 277
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=57.33 E-value=6.1 Score=38.85 Aligned_cols=32 Identities=22% Similarity=0.565 Sum_probs=25.6
Q ss_pred CCCcEEEEeCCH-hhHHHHH---------------HcCCcEEEECCCC
Q 017455 316 PVRNCFLIAGSQ-SGVAGAQ---------------RIGMPCVVMRSRC 347 (371)
Q Consensus 316 ~p~e~I~IgDs~-~Di~aA~---------------~aGm~~v~v~~~~ 347 (371)
++...-+|||.+ +|+.+|. .-|+..|+|.+|-
T Consensus 296 ~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV 343 (389)
T KOG1618|consen 296 PIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGV 343 (389)
T ss_pred CcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeee
Confidence 456778899997 5999996 6688889887763
No 278
>PLN03017 trehalose-phosphatase
Probab=55.99 E-value=11 Score=37.99 Aligned_cols=40 Identities=13% Similarity=-0.049 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCC---CcEEEEeCCHhhHHHHHHc---C-CcEEEEC
Q 017455 305 ALRAGAEYAEKPV---RNCFLIAGSQSGVAGAQRI---G-MPCVVMR 344 (371)
Q Consensus 305 ~~~~a~~~lgv~p---~e~I~IgDs~~Di~aA~~a---G-m~~v~v~ 344 (371)
|++..++.+|... .-.|||||-..|-.|-+.+ | -..|.|.
T Consensus 287 Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG 333 (366)
T PLN03017 287 ALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVS 333 (366)
T ss_pred HHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEEC
Confidence 4788888888653 3479999999987776655 2 3466675
No 279
>PLN02151 trehalose-phosphatase
Probab=54.99 E-value=11 Score=37.69 Aligned_cols=32 Identities=13% Similarity=-0.067 Sum_probs=23.1
Q ss_pred HHHHHHHHcCCCCC---cEEEEeCCHhhHHHHHHc
Q 017455 305 ALRAGAEYAEKPVR---NCFLIAGSQSGVAGAQRI 336 (371)
Q Consensus 305 ~~~~a~~~lgv~p~---e~I~IgDs~~Di~aA~~a 336 (371)
|++..++.++..-. -.|||||-..|-.|-+.+
T Consensus 273 Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L 307 (354)
T PLN02151 273 ALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKIL 307 (354)
T ss_pred HHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHH
Confidence 46777888876532 379999999987666543
No 280
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=51.94 E-value=27 Score=31.14 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=29.4
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL 224 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~l 224 (371)
+.|.+.+.|++|+++|++++++|+.. ...+..++..+
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~---~~~~~~~~~~~ 54 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRS---LAEIKELLKQL 54 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCC---HHHHHHHHHhC
Confidence 56788889999999999999999954 56666666653
No 281
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=51.82 E-value=1.3e+02 Score=28.59 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=25.8
Q ss_pred HHHHcCCCCCcEEEEeCC------HhhHHHHHHcCCcEEEECCCCC
Q 017455 309 GAEYAEKPVRNCFLIAGS------QSGVAGAQRIGMPCVVMRSRCI 348 (371)
Q Consensus 309 a~~~lgv~p~e~I~IgDs------~~Di~aA~~aGm~~v~v~~~~~ 348 (371)
.++++|++ +|+-=|| ..=+++|++.|+++|++..+..
T Consensus 192 l~~~~~i~---~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 192 LLREYRID---AVVTKASGEQGGELEKVKAAEALGINVIRIARPQT 234 (256)
T ss_pred HHHHcCCC---EEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCC
Confidence 35667765 3443344 3349999999999999987753
No 282
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=51.26 E-value=2e+02 Score=26.87 Aligned_cols=41 Identities=5% Similarity=-0.006 Sum_probs=32.4
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCc
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 226 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl 226 (371)
..+...++|+.+|+.|.+.+++=|-. .+-..+.+++..+++
T Consensus 94 ~~~~~~r~i~~Ik~~G~kaGv~lnP~-Tp~~~i~~~l~~vD~ 134 (220)
T COG0036 94 ATEHIHRTIQLIKELGVKAGLVLNPA-TPLEALEPVLDDVDL 134 (220)
T ss_pred cCcCHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHhhCCE
Confidence 56788999999999999999999966 455666666766543
No 283
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=50.83 E-value=15 Score=41.91 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCCCCcE-EEEeCCHh-hHHHHHHcCC-cEEEECC
Q 017455 305 ALRAGAEYAEKPVRNC-FLIAGSQS-GVAGAQRIGM-PCVVMRS 345 (371)
Q Consensus 305 ~~~~a~~~lgv~p~e~-I~IgDs~~-Di~aA~~aGm-~~v~v~~ 345 (371)
|++..+.++|++.+++ ||+||+.+ |++... .|. ++|.+..
T Consensus 960 AlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll-~G~~~tvi~~g 1002 (1050)
T TIGR02468 960 ALRYLFVRWGIELANMAVFVGESGDTDYEGLL-GGLHKTVILKG 1002 (1050)
T ss_pred HHHHHHHHcCCChHHeEEEeccCCCCCHHHHh-CCceeEEEEec
Confidence 5788899999999999 66999999 988774 455 5666654
No 284
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=50.69 E-value=33 Score=33.77 Aligned_cols=30 Identities=13% Similarity=0.303 Sum_probs=26.3
Q ss_pred CCCCCCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 181 KDAPLRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 181 ~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
+..-++|.+.++++.++++|+.+.|.||+.
T Consensus 139 GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~ 168 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKRGFTTFLVTNGT 168 (322)
T ss_pred ccccchhhHHHHHHHHHHcCCCEEEECCCC
Confidence 444478999999999999999999999975
No 285
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=50.50 E-value=9.2 Score=33.59 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=13.0
Q ss_pred eEEEEecCCcccccc
Q 017455 85 LAVLLEVDGVLVDAY 99 (371)
Q Consensus 85 kaviFD~DGTL~d~~ 99 (371)
|+++||.||||++.-
T Consensus 2 ~~~~~d~dg~l~~~~ 16 (161)
T TIGR01261 2 KILFIDRDGTLIEEP 16 (161)
T ss_pred CEEEEeCCCCccccC
Confidence 689999999999843
No 286
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=50.20 E-value=56 Score=33.05 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=34.6
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 345 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~ 345 (371)
|+.+.+++|- .-.-|+|||+.---.+|++..|+++-+..
T Consensus 414 FerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~PfwrI~~ 452 (468)
T KOG3107|consen 414 FERIQSRFGR-KVVYVVIGDGVEEEQAAKALNMPFWRISS 452 (468)
T ss_pred HHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCCceEeecc
Confidence 9999999997 45568899999899999999999999863
No 287
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=48.36 E-value=47 Score=36.95 Aligned_cols=42 Identities=26% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCc
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 226 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl 226 (371)
.-||++.+.+.+..+|++|+++..+|+ .....+..+....|+
T Consensus 588 idPPR~~vP~Av~~CrsAGIkvimVTg---dhpiTAkAiA~~vgI 629 (1019)
T KOG0203|consen 588 IDPPRAAVPDAVGKCRSAGIKVIMVTG---DHPITAKAIAKSVGI 629 (1019)
T ss_pred cCCCcccCchhhhhhhhhCceEEEEec---Cccchhhhhhhheee
Confidence 357999999999999999999999999 335666667776664
No 288
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=48.31 E-value=14 Score=34.81 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=18.9
Q ss_pred ceEEEEecCCccccccccCcHHHHHHHHH
Q 017455 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQ 112 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~~~~~~a~~~~~~ 112 (371)
.+.++.|+||||++.+.. ....+.+.++
T Consensus 2 ~~ll~sDlD~Tl~~~~~~-~~~~l~~~l~ 29 (247)
T PF05116_consen 2 PRLLASDLDGTLIDGDDE-ALARLEELLE 29 (247)
T ss_dssp SEEEEEETBTTTBHCHHH-HHHHHHHHHH
T ss_pred CEEEEEECCCCCcCCCHH-HHHHHHHHHH
Confidence 468999999999943332 3455555555
No 289
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=47.17 E-value=6.1 Score=30.14 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=28.7
Q ss_pred CCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcC
Q 017455 294 SSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIG 337 (371)
Q Consensus 294 p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aG 337 (371)
|...|..++ ++.++|.+.+++..+..|-+...+|...+.+|
T Consensus 23 PE~apftaV---lkfaAeeF~vp~~tsaiItndG~GInP~QTag 63 (76)
T PF03671_consen 23 PEEAPFTAV---LKFAAEEFKVPPATSAIITNDGVGINPQQTAG 63 (76)
T ss_dssp ETTSBHHHH---HHHHHHHTTS-SSSEEEEESSS-EE-TTSBHH
T ss_pred CCCCchHHH---HHHHHHHcCCCCceEEEEecCCcccccchhhh
Confidence 556667777 99999999999999988877666655444433
No 290
>PRK08005 epimerase; Validated
Probab=46.77 E-value=1e+02 Score=28.41 Aligned_cols=36 Identities=8% Similarity=-0.093 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHH
Q 017455 187 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK 223 (371)
Q Consensus 187 pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~ 223 (371)
+...++|+.+|+.|.+.+|.=|..+ +-..+..++..
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~T-p~~~i~~~l~~ 128 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPAT-PLLPYRYLALQ 128 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHHHHh
Confidence 4567899999999999999988653 33444444443
No 291
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=46.75 E-value=14 Score=33.67 Aligned_cols=30 Identities=7% Similarity=0.147 Sum_probs=20.1
Q ss_pred HHcCC--CCCcEEEEeCCHhhHHHHHHcCCcE
Q 017455 311 EYAEK--PVRNCFLIAGSQSGVAGAQRIGMPC 340 (371)
Q Consensus 311 ~~lgv--~p~e~I~IgDs~~Di~aA~~aGm~~ 340 (371)
..+|. +.+++|+|+|+......--..|++.
T Consensus 121 ~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I 152 (195)
T TIGR02245 121 ALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKI 152 (195)
T ss_pred hhcccCCCcccEEEEeCCHHHHhcCCCCcccc
Confidence 35653 7789999999997655444445543
No 292
>PTZ00445 p36-lilke protein; Provisional
Probab=46.72 E-value=15 Score=34.16 Aligned_cols=16 Identities=6% Similarity=-0.020 Sum_probs=14.4
Q ss_pred CCceEEEEecCCcccc
Q 017455 82 PRDLAVLLEVDGVLVD 97 (371)
Q Consensus 82 ~~~kaviFD~DGTL~d 97 (371)
-.+|+|++|+|.||+.
T Consensus 41 ~GIk~Va~D~DnTlI~ 56 (219)
T PTZ00445 41 CGIKVIASDFDLTMIT 56 (219)
T ss_pred cCCeEEEecchhhhhh
Confidence 3589999999999998
No 293
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=46.61 E-value=16 Score=40.88 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.6
Q ss_pred CceEEEEecCCcccccc
Q 017455 83 RDLAVLLEVDGVLVDAY 99 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~~ 99 (371)
+.+++++|+||||++..
T Consensus 595 ~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 595 TTRAILLDYDGTLMPQA 611 (854)
T ss_pred cCeEEEEecCCcccCCc
Confidence 46899999999999665
No 294
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=45.31 E-value=2.3e+02 Score=26.15 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=28.0
Q ss_pred CccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHc
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL 224 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~l 224 (371)
.+...++|+.+|+.|++.++.-|.. .+-..+..++..+
T Consensus 92 ~~~~~~~l~~ik~~g~k~GlalnP~-Tp~~~i~~~l~~~ 129 (220)
T PRK08883 92 SEHVDRTLQLIKEHGCQAGVVLNPA-TPLHHLEYIMDKV 129 (220)
T ss_pred cccHHHHHHHHHHcCCcEEEEeCCC-CCHHHHHHHHHhC
Confidence 3457889999999999999999966 3445555555543
No 295
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=44.19 E-value=87 Score=31.09 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=30.2
Q ss_pred CCCCCccHHHHHHHHHHCC-CcEEEEcCCCCCCcHHHHHHHHHc
Q 017455 182 DAPLRPGVEDFVDDAYNEG-IPLIVLTAYGKSGDRIARSVVEKL 224 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~G-i~v~IvTn~~~~~~~~~~~~l~~l 224 (371)
.-++.|||..+.+.|.+.| .++..+||+ +...-..+-+.+
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnS---Pw~~f~~L~efi 234 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNS---PWQLFPTLQEFI 234 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCC---hhHhHHHHHHHH
Confidence 4669999999999999998 899999994 444444333333
No 296
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=44.15 E-value=96 Score=30.79 Aligned_cols=43 Identities=26% Similarity=0.314 Sum_probs=30.6
Q ss_pred CCccHHHHHHHHHHC----CCcEEEEcCCCCCCcH-HHHHHHHHcCcc
Q 017455 185 LRPGVEDFVDDAYNE----GIPLIVLTAYGKSGDR-IARSVVEKLGSE 227 (371)
Q Consensus 185 ~~pgv~elL~~L~~~----Gi~v~IvTn~~~~~~~-~~~~~l~~lgl~ 227 (371)
+.||+.+.++.|.+. .++.+.+||+....+. -+..+-+.||.+
T Consensus 52 ~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~ 99 (389)
T KOG1618|consen 52 PIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVE 99 (389)
T ss_pred CCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCc
Confidence 778999999999888 8999999998743332 233344455554
No 297
>COG4996 Predicted phosphatase [General function prediction only]
Probab=43.75 E-value=12 Score=32.22 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.0
Q ss_pred eEEEEecCCcccccccc
Q 017455 85 LAVLLEVDGVLVDAYRF 101 (371)
Q Consensus 85 kaviFD~DGTL~d~~~~ 101 (371)
++++||.||||.|-..+
T Consensus 1 ~~i~~d~d~t~wdhh~i 17 (164)
T COG4996 1 RAIVFDADKTLWDHHNI 17 (164)
T ss_pred CcEEEeCCCcccccccc
Confidence 37999999999986544
No 298
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=43.33 E-value=40 Score=29.22 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.6
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
..+.+.++++.++++|+++.+.||+.
T Consensus 73 ~~~~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 73 NREALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 45678899999999999999999954
No 299
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=42.93 E-value=16 Score=31.35 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.9
Q ss_pred ceEEEEecCCcccccc
Q 017455 84 DLAVLLEVDGVLVDAY 99 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~ 99 (371)
.+.+++|+||||+.+.
T Consensus 2 k~~lvldld~tl~~~~ 17 (148)
T smart00577 2 KKTLVLDLDETLVHST 17 (148)
T ss_pred CcEEEEeCCCCeECCC
Confidence 3589999999999985
No 300
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=40.97 E-value=1.7e+02 Score=27.22 Aligned_cols=36 Identities=11% Similarity=-0.014 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHH
Q 017455 187 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK 223 (371)
Q Consensus 187 pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~ 223 (371)
+...++|+.+|+.|++.+|.=|.. .+-..+..++..
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~-T~~~~i~~~l~~ 132 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPA-TPVDILDWVLPE 132 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCC-CCHHHHHHHHhh
Confidence 457789999999999999999965 234444455443
No 301
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=40.88 E-value=50 Score=30.50 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=27.0
Q ss_pred CCcc-HHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHH
Q 017455 185 LRPG-VEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVE 222 (371)
Q Consensus 185 ~~pg-v~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~ 222 (371)
+.++ +.++++.++++|+.+++.||+. .+......++.
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~-~~~~~~~~l~~ 88 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGD-APASKLLPLAK 88 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC-CCHHHHHHHHH
Confidence 5666 6899999999999999999975 23334444433
No 302
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=40.29 E-value=2.5e+02 Score=26.67 Aligned_cols=100 Identities=23% Similarity=0.295 Sum_probs=60.0
Q ss_pred CCCCCccHHHHHHH---HHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCc
Q 017455 182 DAPLRPGVEDFVDD---AYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 258 (371)
Q Consensus 182 ~~~~~pgv~elL~~---L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~ 258 (371)
...++|+..++++. |.+.|+.|--+++- +-.+-+.++..|-.-... .|..+.+|.
T Consensus 102 ~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~----D~v~akrL~d~GcaavMP------------------lgsPIGSg~ 159 (247)
T PF05690_consen 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTD----DPVLAKRLEDAGCAAVMP------------------LGSPIGSGR 159 (247)
T ss_dssp TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-----HHHHHHHHHTT-SEBEE------------------BSSSTTT--
T ss_pred CCCcCCChhHHHHHHHHHHHCCCEEeecCCC----CHHHHHHHHHCCCCEEEe------------------cccccccCc
Confidence 34578888887765 55789999998872 566667777777654332 222222221
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCC---HhhHHHHHH
Q 017455 259 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQR 335 (371)
Q Consensus 259 ~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs---~~Di~aA~~ 335 (371)
- =-+|+. ++.+.++.+++ |+|+-+ ++|...|.+
T Consensus 160 G--------------------------i~n~~~--------------l~~i~~~~~vP----vIvDAGiG~pSdaa~AME 195 (247)
T PF05690_consen 160 G--------------------------IQNPYN--------------LRIIIERADVP----VIVDAGIGTPSDAAQAME 195 (247)
T ss_dssp ---------------------------SSTHHH--------------HHHHHHHGSSS----BEEES---SHHHHHHHHH
T ss_pred C--------------------------CCCHHH--------------HHHHHHhcCCc----EEEeCCCCCHHHHHHHHH
Confidence 0 011222 78888999887 777744 579999999
Q ss_pred cCCcEEEECCCC
Q 017455 336 IGMPCVVMRSRC 347 (371)
Q Consensus 336 aGm~~v~v~~~~ 347 (371)
.|+..|++++.-
T Consensus 196 lG~daVLvNTAi 207 (247)
T PF05690_consen 196 LGADAVLVNTAI 207 (247)
T ss_dssp TT-SEEEESHHH
T ss_pred cCCceeehhhHH
Confidence 999999998653
No 303
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=39.33 E-value=22 Score=32.85 Aligned_cols=43 Identities=12% Similarity=-0.008 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCC---CCcEEEEeCCHhhHHHHHHcCCc-----EEEECCCC
Q 017455 305 ALRAGAEYAEKP---VRNCFLIAGSQSGVAGAQRIGMP-----CVVMRSRC 347 (371)
Q Consensus 305 ~~~~a~~~lgv~---p~e~I~IgDs~~Di~aA~~aGm~-----~v~v~~~~ 347 (371)
|++.+++.++.. ++-+|++||...|-.+-+.+.-. .|.|.+..
T Consensus 169 av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~ 219 (235)
T PF02358_consen 169 AVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVS 219 (235)
T ss_dssp HHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES---
T ss_pred HHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeec
Confidence 377788888776 78899999999998887776443 66776554
No 304
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=37.43 E-value=71 Score=31.77 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=32.2
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
+.-++|++.++++.++++|+.+.+.||+..-.++.++ .+...|++
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~-~L~~~g~~ 116 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLA-ALKDAGLD 116 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHH-HHHHcCCC
Confidence 4447899999999999999999999997632233333 34455654
No 305
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=36.92 E-value=3e+02 Score=25.19 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=23.4
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHH
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQR 335 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~ 335 (371)
+...++.+. ..+++-+.+|...-+.+-+.
T Consensus 123 l~~ll~~Y~-~~~eI~IYeDR~~hvk~Fr~ 151 (197)
T PF10307_consen 123 LEDLLHTYK-NAEEIRIYEDRPKHVKGFRD 151 (197)
T ss_pred HHHHHHhcC-CCCEEEEEcCCHHHHHHHHH
Confidence 666777777 78999999999988776654
No 306
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=36.72 E-value=71 Score=31.43 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
..-++|++.++++.++++|+.+.+.||+..-.++.+.. +...|++
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~-L~~~g~~ 107 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDA-LADAGLD 107 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHH-HHhCCCC
Confidence 34478999999999999999999999976322333433 4445654
No 307
>PLN02887 hydrolase family protein
Probab=36.51 E-value=54 Score=35.04 Aligned_cols=41 Identities=7% Similarity=0.193 Sum_probs=34.3
Q ss_pred CCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 184 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 184 ~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
.+.+...+.|++++++|++++++|+. ....+..+++.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR---~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGK---ARPAVIDILKMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCC---CHHHHHHHHHHhCcc
Confidence 46788899999999999999999994 356677788888875
No 308
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=36.13 E-value=3.4e+02 Score=26.10 Aligned_cols=103 Identities=20% Similarity=0.263 Sum_probs=67.6
Q ss_pred CCCCCccHHHHHHHH---HHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCc
Q 017455 182 DAPLRPGVEDFVDDA---YNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 258 (371)
Q Consensus 182 ~~~~~pgv~elL~~L---~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~ 258 (371)
.-.++|+..++++.. -+.|+.|--+++- +-.+-+.++..|-.-... .|..+.+|.
T Consensus 116 ~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~----D~v~a~rLed~Gc~aVMP------------------lgsPIGSg~ 173 (267)
T CHL00162 116 PKYLLPDPIGTLKAAEFLVKKGFTVLPYINA----DPMLAKHLEDIGCATVMP------------------LGSPIGSGQ 173 (267)
T ss_pred CcccCCChHHHHHHHHHHHHCCCEEeecCCC----CHHHHHHHHHcCCeEEee------------------ccCcccCCC
Confidence 455888888887654 4679999999883 566667777777654321 122222221
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCC---HhhHHHHHH
Q 017455 259 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQR 335 (371)
Q Consensus 259 ~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs---~~Di~aA~~ 335 (371)
- =.+|+. ++.+.+...++ |++|-+ .+|+..|.+
T Consensus 174 G--------------------------l~n~~~--------------l~~i~e~~~vp----VivdAGIgt~sDa~~AmE 209 (267)
T CHL00162 174 G--------------------------LQNLLN--------------LQIIIENAKIP----VIIDAGIGTPSEASQAME 209 (267)
T ss_pred C--------------------------CCCHHH--------------HHHHHHcCCCc----EEEeCCcCCHHHHHHHHH
Confidence 0 012222 67777766655 777755 579999999
Q ss_pred cCCcEEEECCCCCCC
Q 017455 336 IGMPCVVMRSRCITT 350 (371)
Q Consensus 336 aGm~~v~v~~~~~~~ 350 (371)
.|...|+++++-.+.
T Consensus 210 lGaDgVL~nSaIakA 224 (267)
T CHL00162 210 LGASGVLLNTAVAQA 224 (267)
T ss_pred cCCCEEeecceeecC
Confidence 999999999876543
No 309
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=35.83 E-value=1.8e+02 Score=24.50 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHCCCcEEEEcCCCCC---CcHHHHHHHHHcCccccchheeecchhHH
Q 017455 165 NVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKS---GDRIARSVVEKLGSERISKIKIVGNEEVE 241 (371)
Q Consensus 165 ~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~---~~~~~~~~l~~lgl~~~f~~~i~~~~~~~ 241 (371)
+..+...+.+.+.. ....+....+.+++.+...+|-++.++-|++ + -...........+..+.....+...+..
T Consensus 1 ~y~~~~~~~l~~v~-~~~~~~i~~aa~~i~~~~~~gg~i~~~G~G~-S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~- 77 (138)
T PF13580_consen 1 QYFDEIQELLEAVE-ETQAEAIEKAADLIAEALRNGGRIFVCGNGH-SAAIASHFAADLGGLFGVNRILLPAIALNDDA- 77 (138)
T ss_dssp -HHHHHHHHHHHHH-HHSHHHHHHHHHHHHHHHHTT--EEEEESTH-HHHHHHHHHHHHHCHSSSTSSS-SEEETTSTH-
T ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCEEEEEcCch-hhhHHHHHHHHHhcCcCCCcccccccccccch-
Q ss_pred hhhhccccccccccCCchhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEE
Q 017455 242 RSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCF 321 (371)
Q Consensus 242 ~~~f~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I 321 (371)
..........+... -+..+..+.+.|.+++
T Consensus 78 ~~~~~~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~gDvl 107 (138)
T PF13580_consen 78 LTAISNDLEYDEGF--------------------------------------------------ARQLLALYDIRPGDVL 107 (138)
T ss_dssp HHHHHHHTTGGGTH--------------------------------------------------HHHHHHHTT--TT-EE
T ss_pred HhhhhcccchhhHH--------------------------------------------------HHHHHHHcCCCCCCEE
Q ss_pred EE----eCCHhhHHHHHHc---CCcEEEEC
Q 017455 322 LI----AGSQSGVAGAQRI---GMPCVVMR 344 (371)
Q Consensus 322 ~I----gDs~~Di~aA~~a---Gm~~v~v~ 344 (371)
++ |.+++=|++++.| ||.+|.++
T Consensus 108 i~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 108 IVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp EEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEEe
No 310
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=35.72 E-value=1.4e+02 Score=29.76 Aligned_cols=36 Identities=8% Similarity=0.077 Sum_probs=23.6
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhh--HHHHHHcCCcEEEE
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSG--VAGAQRIGMPCVVM 343 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~D--i~aA~~aGm~~v~v 343 (371)
+..++++++ |+.+++|.|+..| +-..-+.-.+.+.+
T Consensus 90 ld~vl~~~~--~~~~i~VsDGaeDE~vlPiIqSr~~V~sV 127 (344)
T PF04123_consen 90 LDEVLSKFD--PDSAIVVSDGAEDERVLPIIQSRVPVDSV 127 (344)
T ss_pred HHHHHHhCC--CCEEEEEecChhhhhhhHhhhccCceEEE
Confidence 455566665 7799999999998 33444444444444
No 311
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=35.70 E-value=1.1e+02 Score=26.85 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.3
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
.-++|.+.++++.+++.|+.+.+.||+.
T Consensus 73 Pll~~~l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 73 PTLQAGLPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred ccCcHhHHHHHHHHHHCCCeEEEEeCCC
Confidence 3367789999999999999999999975
No 312
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.14 E-value=2.6e+02 Score=26.03 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=23.5
Q ss_pred EEEEeCCH---hhHHHHHHcCCcEEEECCCCC
Q 017455 320 CFLIAGSQ---SGVAGAQRIGMPCVVMRSRCI 348 (371)
Q Consensus 320 ~I~IgDs~---~Di~aA~~aGm~~v~v~~~~~ 348 (371)
.|.+|-+. .++..+.++|...+++++...
T Consensus 187 ~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~ 218 (244)
T PRK13125 187 YLVVGFGLDSPEDARDALSAGADGVVVGTAFI 218 (244)
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 48888877 488888899999999987643
No 313
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=34.03 E-value=52 Score=30.54 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 187 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 187 pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
|.+.+++++++++|++++++|+.. ...++.+.+.+++.
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~---~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRS---PHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCC---HHHHHHHHhcCCCC
Confidence 456667888999999999999943 55666777777764
No 314
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=33.45 E-value=41 Score=31.45 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.7
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
+++++.++++.+++.|+++.|-||++
T Consensus 85 l~~~l~~li~~l~~~g~~v~leTNGt 110 (238)
T TIGR03365 85 LQKPLGELIDLGKAKGYRFALETQGS 110 (238)
T ss_pred hhHhHHHHHHHHHHCCCCEEEECCCC
Confidence 56889999999999999999999975
No 315
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=33.19 E-value=46 Score=31.72 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=36.5
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCCCC--cEEEEeCCH-hhHHHHHHcCCcEEE
Q 017455 293 TSSPESLDKIVAALRAGAEYAEKPVR--NCFLIAGSQ-SGVAGAQRIGMPCVV 342 (371)
Q Consensus 293 ~p~~~~~~~~~~~~~~a~~~lgv~p~--e~I~IgDs~-~Di~aA~~aGm~~v~ 342 (371)
||+|++..++ |..-++.+|++|. ++-||+|.- +--.+|-.+|+-+.+
T Consensus 81 KPsP~niQel---YL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVWl 130 (279)
T cd00733 81 KPSPDNIQEL---YLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVWL 130 (279)
T ss_pred CCCCccHHHH---HHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 5556656666 9999999999874 689999985 567788888887655
No 316
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=33.07 E-value=25 Score=30.77 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=13.8
Q ss_pred eEEEEecCCccccccc
Q 017455 85 LAVLLEVDGVLVDAYR 100 (371)
Q Consensus 85 kaviFD~DGTL~d~~~ 100 (371)
+.+++|+|+||+-+..
T Consensus 2 ~~lvlDLDeTLi~~~~ 17 (162)
T TIGR02251 2 KTLVLDLDETLVHSTF 17 (162)
T ss_pred cEEEEcCCCCcCCCCC
Confidence 4799999999998764
No 317
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=32.86 E-value=1.9e+02 Score=28.79 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=22.7
Q ss_pred CccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
-|-|..+.+.|+++|++++++|-+.
T Consensus 63 TP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 63 TPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred CHHHHHHHHHHHhcCCeeEEEecCc
Confidence 5789999999999999999999854
No 318
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.56 E-value=43 Score=25.87 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=34.3
Q ss_pred CCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCc
Q 017455 294 SSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP 339 (371)
Q Consensus 294 p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~ 339 (371)
|...|..++ ++.+++.+.+++...-.|-....+|..|+.+|--
T Consensus 34 pestpftav---lkfaaeefkvpaatsaiitndgiginpaq~agnv 76 (94)
T KOG3483|consen 34 PESTPFTAV---LKFAAEEFKVPAATSAIITNDGIGINPAQTAGNV 76 (94)
T ss_pred CCCCchHHH---HHHHHHHccCCccceeEEecCccccCccccccce
Confidence 555666666 9999999999998877777666788888888853
No 319
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.35 E-value=2.4e+02 Score=27.17 Aligned_cols=54 Identities=19% Similarity=0.363 Sum_probs=33.2
Q ss_pred HHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHC--CCcEEEEcCC
Q 017455 146 NRIGWPTSVPTNEKKAFVKNVLQEKKNALDEFLASKDAPLRPGVEDFVDDAYNE--GIPLIVLTAY 209 (371)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~pgv~elL~~L~~~--Gi~v~IvTn~ 209 (371)
-++|+|.|.|-.+-.. ++.- -.+++. .+ .-.+.+.++++.+++. +++++++|=+
T Consensus 48 iELGvPfSDPvADGP~-Iq~A---~~rAL~----~g--~t~~~~lel~~~~r~~~~~~Pivlm~Y~ 103 (265)
T COG0159 48 LELGVPFSDPVADGPT-IQAA---HLRALA----AG--VTLEDTLELVEEIRAKGVKVPIVLMTYY 103 (265)
T ss_pred EEecCCCCCcCccCHH-HHHH---HHHHHH----CC--CCHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 3679999988766322 2211 112221 21 2457788899999965 5679999964
No 320
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=32.34 E-value=2.5e+02 Score=22.22 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=18.7
Q ss_pred CcEEEEeCCHhhHHHHHHcCCcEEEE
Q 017455 318 RNCFLIAGSQSGVAGAQRIGMPCVVM 343 (371)
Q Consensus 318 ~e~I~IgDs~~Di~aA~~aGm~~v~v 343 (371)
-.++..-+.....+.++.+|+..|..
T Consensus 90 ~~ii~~~~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 90 IRIIARVNDPENAELLRQAGADHVIS 115 (116)
T ss_dssp SEEEEEESSHHHHHHHHHTT-SEEEE
T ss_pred CeEEEEECCHHHHHHHHHCCcCEEEC
Confidence 45677777777788888888887764
No 321
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=32.16 E-value=1.7e+02 Score=28.99 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHC-CCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCCchhHHHHHHH
Q 017455 189 VEDFVDDAYNE-GIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEAR 267 (371)
Q Consensus 189 v~elL~~L~~~-Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~~~~~~~~~~~ 267 (371)
+.++|+.|.+. ++++++.-. +.+.....+.+.+.--+ .+.++..-....
T Consensus 202 i~~~l~~L~~~~~~~vi~~~h---n~p~~~~~i~~~l~~~~--~v~~~~~l~~~~------------------------- 251 (346)
T PF02350_consen 202 ILEALKALAERQNVPVIFPLH---NNPRGSDIIIEKLKKYD--NVRLIEPLGYEE------------------------- 251 (346)
T ss_dssp HHHHHHHHHHHTTEEEEEE-----S-HHHHHHHHHHHTT-T--TEEEE----HHH-------------------------
T ss_pred HHHHHHHHHhcCCCcEEEEec---CCchHHHHHHHHhcccC--CEEEECCCCHHH-------------------------
Q ss_pred HHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHH-HHHHcCCcEEEECCC
Q 017455 268 KAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVA-GAQRIGMPCVVMRSR 346 (371)
Q Consensus 268 k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~-aA~~aGm~~v~v~~~ 346 (371)
|..+++... ++||||. +|. -|-..|.+||-+++.
T Consensus 252 --------------------------------------~l~ll~~a~------~vvgdSs-GI~eEa~~lg~P~v~iR~~ 286 (346)
T PF02350_consen 252 --------------------------------------YLSLLKNAD------LVVGDSS-GIQEEAPSLGKPVVNIRDS 286 (346)
T ss_dssp --------------------------------------HHHHHHHES------EEEESSH-HHHHHGGGGT--EEECSSS
T ss_pred --------------------------------------HHHHHhcce------EEEEcCc-cHHHHHHHhCCeEEEecCC
Q ss_pred CCCCcccccccccc
Q 017455 347 CITTLPVSKTQRLA 360 (371)
Q Consensus 347 ~~~~~~l~~~~~~~ 360 (371)
....+......-++
T Consensus 287 geRqe~r~~~~nvl 300 (346)
T PF02350_consen 287 GERQEGRERGSNVL 300 (346)
T ss_dssp -S-HHHHHTTSEEE
T ss_pred CCCHHHHhhcceEE
No 322
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=31.62 E-value=33 Score=29.97 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=15.9
Q ss_pred CceEEEEecCCcccccccc
Q 017455 83 RDLAVLLEVDGVLVDAYRF 101 (371)
Q Consensus 83 ~~kaviFD~DGTL~d~~~~ 101 (371)
+.+.+++|+|.||+.+...
T Consensus 5 ~kl~LVLDLDeTLihs~~~ 23 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTKD 23 (156)
T ss_pred CceEEEEeCCCCccccccc
Confidence 3568999999999998764
No 323
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=31.62 E-value=1e+02 Score=31.84 Aligned_cols=30 Identities=13% Similarity=0.307 Sum_probs=21.8
Q ss_pred CCCCcEEEEeCCHhhHHHHH-------HcCCcEEEEC
Q 017455 315 KPVRNCFLIAGSQSGVAGAQ-------RIGMPCVVMR 344 (371)
Q Consensus 315 v~p~e~I~IgDs~~Di~aA~-------~aGm~~v~v~ 344 (371)
+.|+++++|=|+..+-.|.. ++|+..|.++
T Consensus 211 ~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 211 INPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred cCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 57999999999987654443 3477777764
No 324
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=31.48 E-value=95 Score=23.60 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=28.0
Q ss_pred HHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchh
Q 017455 191 DFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKI 232 (371)
Q Consensus 191 elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~ 232 (371)
++.+.++++|..+.+..- ...+..+++.+|+.+.|.+
T Consensus 61 ~l~~~~~~~g~~v~i~~~-----~~~~~~~l~~~gl~~~~~i 97 (99)
T cd07043 61 GAYKRARAAGGRLVLVNV-----SPAVRRVLELTGLDRLFPI 97 (99)
T ss_pred HHHHHHHHcCCeEEEEcC-----CHHHHHHHHHhCcceeeec
Confidence 466788888988776654 4678889999999877653
No 325
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=31.44 E-value=77 Score=34.59 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=32.8
Q ss_pred CccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
.+...+.|+.|+++|++++++|+.. ...+..+.+.+++.++
T Consensus 435 ~~~t~eAL~~L~ekGI~~VIATGRs---~~~i~~l~~~Lgl~~~ 475 (694)
T PRK14502 435 YSTALDALRLLKDKELPLVFCSAKT---MGEQDLYRNELGIKDP 475 (694)
T ss_pred CHHHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHcCCCCe
Confidence 3456788999999999999999954 5667788888887643
No 326
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=30.91 E-value=51 Score=31.44 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=36.5
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCCCC--cEEEEeCCH-hhHHHHHHcCCcEEE
Q 017455 293 TSSPESLDKIVAALRAGAEYAEKPVR--NCFLIAGSQ-SGVAGAQRIGMPCVV 342 (371)
Q Consensus 293 ~p~~~~~~~~~~~~~~a~~~lgv~p~--e~I~IgDs~-~Di~aA~~aGm~~v~ 342 (371)
||+|+...++ |..-++.+|++|. ++-||+|.- +--.+|-.+|+-+.+
T Consensus 85 KPsP~niQel---YL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 134 (283)
T PRK09348 85 KPSPDNIQEL---YLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVWL 134 (283)
T ss_pred cCCCccHHHH---HHHHHHHhCCCccccceeEeecCCCCCcccccccceEEEE
Confidence 5666666666 9999999999975 689999985 567788888877655
No 327
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=30.76 E-value=34 Score=33.20 Aligned_cols=23 Identities=9% Similarity=-0.185 Sum_probs=17.3
Q ss_pred HHHHHHHcCCCCCc-EEEEeCCHh
Q 017455 306 LRAGAEYAEKPVRN-CFLIAGSQS 328 (371)
Q Consensus 306 ~~~a~~~lgv~p~e-~I~IgDs~~ 328 (371)
....+++.|+..=. .-.|+|-..
T Consensus 234 VL~yL~k~gvny~KtiTLVDDL~~ 257 (297)
T PF05152_consen 234 VLWYLRKKGVNYFKTITLVDDLKS 257 (297)
T ss_pred hHHHHHHcCCceeeeEEEeccCcc
Confidence 78889999998644 456787753
No 328
>PLN02334 ribulose-phosphate 3-epimerase
Probab=30.46 E-value=3.8e+02 Score=24.57 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=21.4
Q ss_pred EEEEe-CCHhhHHHHHHcCCcEEEECCCCC
Q 017455 320 CFLIA-GSQSGVAGAQRIGMPCVVMRSRCI 348 (371)
Q Consensus 320 ~I~Ig-Ds~~Di~aA~~aGm~~v~v~~~~~ 348 (371)
++++| =+..++....++|...+.+.+.-.
T Consensus 177 I~a~GGI~~e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 177 IEVDGGVGPSTIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEEChHHh
Confidence 44443 334689999999999999986643
No 329
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=30.22 E-value=18 Score=34.71 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=33.5
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 226 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl 226 (371)
+.-+|++.+||+..-+. +.+++.|+ +...++..++..|.-
T Consensus 130 V~kRP~vdeFL~~~s~~-~e~v~FTA---s~~~Ya~~v~D~LD~ 169 (262)
T KOG1605|consen 130 VRKRPHVDEFLSRVSKW-YELVLFTA---SLEVYADPLLDILDP 169 (262)
T ss_pred EEcCCCHHHHHHHhHHH-HHHHHHHh---hhHHHHHHHHHHccC
Confidence 34689999999998776 89999999 448889999998876
No 330
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=29.81 E-value=88 Score=31.46 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=34.5
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccc
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 230 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f 230 (371)
..-+|||.-+|..+. +.+.|+++|. ...-.+..+++.++...+.
T Consensus 213 f~kRPgvD~FL~~~a-~~yEIVi~ss---e~gmt~~pl~d~lDP~g~I 256 (393)
T KOG2832|consen 213 FKKRPGVDYFLGHLA-KYYEIVVYSS---EQGMTVFPLLDALDPKGYI 256 (393)
T ss_pred eccCchHHHHHHhhc-ccceEEEEec---CCccchhhhHhhcCCcceE
Confidence 446999999999997 6799999998 4456677788888776443
No 331
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.53 E-value=3.9e+02 Score=25.26 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=23.0
Q ss_pred EEEeCCHh---hHHHHHHcCCcEEEECCCCC
Q 017455 321 FLIAGSQS---GVAGAQRIGMPCVVMRSRCI 348 (371)
Q Consensus 321 I~IgDs~~---Di~aA~~aGm~~v~v~~~~~ 348 (371)
|++|-+.+ ++..+..+|...|.+++...
T Consensus 201 i~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 201 VLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 78887654 89999999999999987654
No 332
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=29.40 E-value=46 Score=29.45 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCCchhHHHHHHHHHHHHH---cCCCCCcEEEEeCCHhh
Q 017455 294 SSPESLDKIVAALRAGAEY---AEKPVRNCFLIAGSQSG 329 (371)
Q Consensus 294 p~~~~~~~~~~~~~~a~~~---lgv~p~e~I~IgDs~~D 329 (371)
+-|....++..||+++.+. +|.++++++++|||.=+
T Consensus 44 ~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg 82 (211)
T PF07859_consen 44 PFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGG 82 (211)
T ss_dssp STTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHH
T ss_pred cccccccccccceeeeccccccccccccceEEeeccccc
Confidence 4477788888889998877 79999999999999754
No 333
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=28.94 E-value=4.7e+02 Score=24.16 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.9
Q ss_pred cEEEEeCCHh--hHHHHHHcCCcEEEECCCCC
Q 017455 319 NCFLIAGSQS--GVAGAQRIGMPCVVMRSRCI 348 (371)
Q Consensus 319 e~I~IgDs~~--Di~aA~~aGm~~v~v~~~~~ 348 (371)
-.|.|+.+.+ .+..+.++|...+.++++-.
T Consensus 174 ~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~ 205 (228)
T PTZ00170 174 LNIQVDGGINLETIDIAADAGANVIVAGSSIF 205 (228)
T ss_pred CeEEECCCCCHHHHHHHHHcCCCEEEEchHHh
Confidence 4477777765 79999999999999987654
No 334
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=28.66 E-value=61 Score=31.10 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=36.3
Q ss_pred CCCCchhHHHHHHHHHHHHHcCCCCC--cEEEEeCCH-hhHHHHHHcCCcEEE
Q 017455 293 TSSPESLDKIVAALRAGAEYAEKPVR--NCFLIAGSQ-SGVAGAQRIGMPCVV 342 (371)
Q Consensus 293 ~p~~~~~~~~~~~~~~a~~~lgv~p~--e~I~IgDs~-~Di~aA~~aGm~~v~ 342 (371)
||+|+...++ |..-++.+|++|. ++-||+|.- +--.+|-.+|+-+.+
T Consensus 82 KPsP~niQel---YL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVWl 131 (293)
T TIGR00388 82 KPSPDNIQEL---YLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEVWL 131 (293)
T ss_pred CCCCccHHHH---HHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEEE
Confidence 4555656666 9999999999985 689999985 567788888876654
No 335
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=28.49 E-value=5.1e+02 Score=27.22 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCC---------CCCCcccccccccchHHHHhh
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR---------CITTLPVSKTQRLADMLCRIL 367 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~---------~~~~~~l~~~~~~~~~l~~~l 367 (371)
++..+++.+.+ ++||++ ..-..|++.|++++.+..+ +.....+.++..+++++.+.|
T Consensus 366 i~~~I~~~~pd----liiGs~-~er~ia~~lgiP~~~is~Pv~~~~~p~~~~p~~Gy~Ga~~l~~~i~n~l 431 (513)
T CHL00076 366 VGDMIARVEPS----AIFGTQ-MERHIGKRLDIPCGVISAPVHIQNFPLGYRPFLGYEGTNQIADLVYNSF 431 (513)
T ss_pred HHHHHHhcCCC----EEEECc-hhhHHHHHhCCCEEEeecccccccccCCCCCccchHHHHHHHHHHHHHh
Confidence 45555665544 889998 4444589999999876522 122233445555666666654
No 336
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.03 E-value=73 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.7
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
-.+.+.+.++.++++|.+++.+|+..
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 59 ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 35778999999999999999999954
No 337
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=27.68 E-value=70 Score=25.97 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=21.9
Q ss_pred CccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
.+.+.+.++.++++|.+++.+|+..
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCC
Confidence 4678899999999999999999954
No 338
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=27.35 E-value=1.3e+02 Score=23.70 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccch
Q 017455 191 DFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK 231 (371)
Q Consensus 191 elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~ 231 (371)
.+.+.++++|.++.++.- ...+...++..|+.+.+.
T Consensus 62 ~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~~~~~ 97 (106)
T TIGR02886 62 GRYKKIKNEGGEVIVCNV-----SPAVKRLFELSGLFKIIR 97 (106)
T ss_pred HHHHHHHHcCCEEEEEeC-----CHHHHHHHHHhCCceEEE
Confidence 356778889999988765 677889999999988774
No 339
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=27.33 E-value=1.6e+02 Score=27.89 Aligned_cols=57 Identities=14% Similarity=0.078 Sum_probs=43.8
Q ss_pred cCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCCCCC
Q 017455 286 KLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCITT 350 (371)
Q Consensus 286 KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~~~ 350 (371)
||-.+| ...|.|++.++.+++. ..+++|+--|+..=..+.++.|..+++....+.+.
T Consensus 20 KPLadI-----~GkpmI~rV~e~a~~s---~~~rvvVATDde~I~~av~~~G~~avmT~~~h~SG 76 (247)
T COG1212 20 KPLADI-----GGKPMIVRVAERALKS---GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQSG 76 (247)
T ss_pred Cchhhh-----CCchHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCCCc
Confidence 676666 4567887777777766 35788888899998999999999999987655443
No 340
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=26.93 E-value=4.4e+02 Score=26.55 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=14.9
Q ss_pred cCCCCCcEEEEeCCH--hhHHHHHHcCCcEEEE
Q 017455 313 AEKPVRNCFLIAGSQ--SGVAGAQRIGMPCVVM 343 (371)
Q Consensus 313 lgv~p~e~I~IgDs~--~Di~aA~~aGm~~v~v 343 (371)
.|++|++++|-|-.. .+++.|.+.|+..+.+
T Consensus 76 ~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i~v 108 (394)
T cd06831 76 LGVSPENIIYTNPCKQASQIKYAAKVGVNIMTC 108 (394)
T ss_pred cCCCcCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 455555555544432 3455555555544433
No 341
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=26.66 E-value=1.1e+02 Score=29.73 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=28.4
Q ss_pred CccHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCc
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 226 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl 226 (371)
.||+..+-..|++.|.++.|+|... ....+...++.+++
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~~--~~~~~~~~~~~~~~ 100 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDER--CAPVVKAAVRAAGL 100 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECHH--HHHHHHHHHHHHhh
Confidence 6899999999999999999999832 13344444444454
No 342
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=26.30 E-value=1.2e+02 Score=27.86 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=7.8
Q ss_pred EEecCCccccccc
Q 017455 88 LLEVDGVLVDAYR 100 (371)
Q Consensus 88 iFD~DGTL~d~~~ 100 (371)
+||+||||.+...
T Consensus 1 ~lDyDGTL~p~~~ 13 (235)
T PF02358_consen 1 FLDYDGTLAPIVD 13 (235)
T ss_dssp EEE-TTTSS---S
T ss_pred CcccCCccCCCCC
Confidence 6999999997654
No 343
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=26.28 E-value=1e+02 Score=29.35 Aligned_cols=28 Identities=14% Similarity=-0.030 Sum_probs=24.5
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
....+.+.++++.++++|+++++.||+.
T Consensus 95 ~~q~e~~~~~~~~ake~Gl~~~l~TnG~ 122 (260)
T COG1180 95 TLQAEFALDLLRAAKERGLHVALDTNGF 122 (260)
T ss_pred hhhHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 3467788899999999999999999975
No 344
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=26.24 E-value=6.9e+02 Score=25.27 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=32.2
Q ss_pred HHHHHHHcCCCCCcEEEEe-CCHhhHHHHHHcCCcEEEECCCCC-CCcccccccccchHHHHhh
Q 017455 306 LRAGAEYAEKPVRNCFLIA-GSQSGVAGAQRIGMPCVVMRSRCI-TTLPVSKTQRLADMLCRIL 367 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~Ig-Ds~~Di~aA~~aGm~~v~v~~~~~-~~~~l~~~~~~~~~l~~~l 367 (371)
+...++++. |+ ++|+ -+......+.+.|++++-+..... ......++-..++++.+.|
T Consensus 365 ~~~~l~~~~--pD--l~i~~~~~~~~~~~~~~gip~~~~~~~~~~~~~Gy~G~~~l~~~i~~~l 424 (426)
T cd01972 365 FYNLLKRVK--PD--FIIFRHGGLFPDATVYLGIPVVPLNDELNQPQFGYRGLLKIANKIVDAL 424 (426)
T ss_pred HHHHHHHhC--CC--EEEEcCCCccHHHHHhcCCCEEeccccccCCcccHhHHHHHHHHHHHHh
Confidence 445556664 33 5554 345677778889999998864311 1122334333455555544
No 345
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=25.71 E-value=5.9e+02 Score=26.10 Aligned_cols=57 Identities=16% Similarity=0.073 Sum_probs=32.4
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCCCC-CCcccccccccchHHHHhh
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCI-TTLPVSKTQRLADMLCRIL 367 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~~~-~~~~l~~~~~~~~~l~~~l 367 (371)
+...+++.+.+ ++||.+. .-..|++.|++.+.+..... ....+.++...++++.+.+
T Consensus 387 ~~~~i~~~~pD----l~ig~~~-~~~~a~k~giP~i~~~~~~~~p~~Gy~G~~~l~~~i~~a~ 444 (456)
T TIGR01283 387 LLKLLLEYKAD----LLIAGGK-ERYTALKLGIPFCDINHEREHPYAGYDGMVEFAREVDLTV 444 (456)
T ss_pred HHHHHhhcCCC----EEEEccc-hHHHHHhcCCCEEEcccccCCCCcchhhHHHHHHHHHHHh
Confidence 45556666544 6777643 45567789999887653211 1223444444555555544
No 346
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=25.64 E-value=44 Score=30.18 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.3
Q ss_pred ceEEEEecCCccccccc
Q 017455 84 DLAVLLEVDGVLVDAYR 100 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~~ 100 (371)
.++|++|-||||.....
T Consensus 5 ~k~lflDRDGtin~d~~ 21 (181)
T COG0241 5 QKALFLDRDGTINIDKG 21 (181)
T ss_pred CcEEEEcCCCceecCCC
Confidence 68999999999986544
No 347
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=25.49 E-value=1.4e+02 Score=30.40 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCCCCccHHHHHHHHHHCCCcEEEE-cCCCCCCcHHHHHHHHHcCccc
Q 017455 182 DAPLRPGVEDFVDDAYNEGIPLIVL-TAYGKSGDRIARSVVEKLGSER 228 (371)
Q Consensus 182 ~~~~~pgv~elL~~L~~~Gi~v~Iv-Tn~~~~~~~~~~~~l~~lgl~~ 228 (371)
..-++|.+.++|+.+++.|+++++. ||+..-........+..+|++.
T Consensus 84 epl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~ 131 (404)
T TIGR03278 84 DVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVRE 131 (404)
T ss_pred ccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCE
Confidence 3447899999999999999999995 9954111222233344455553
No 348
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=25.41 E-value=91 Score=27.99 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=12.2
Q ss_pred HHHHHcCCCCCcEEEEeCCHhhH
Q 017455 308 AGAEYAEKPVRNCFLIAGSQSGV 330 (371)
Q Consensus 308 ~a~~~lgv~p~e~I~IgDs~~Di 330 (371)
.-+.++|++++++.+.|+-.-|.
T Consensus 162 ~r~~~lG~~~~~v~v~GnlKfd~ 184 (186)
T PF04413_consen 162 ERFRKLGAPPERVHVTGNLKFDQ 184 (186)
T ss_dssp HHHHTTT-S--SEEE---GGG--
T ss_pred HHHHHcCCCcceEEEeCcchhcc
Confidence 34788999999999999987665
No 349
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=25.37 E-value=44 Score=37.16 Aligned_cols=16 Identities=19% Similarity=0.328 Sum_probs=13.6
Q ss_pred ceEEEEecCCcccccc
Q 017455 84 DLAVLLEVDGVLVDAY 99 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~ 99 (371)
-++++||+||||++..
T Consensus 507 ~rll~LDyDGTL~~~~ 522 (797)
T PLN03063 507 NRLLILGFYGTLTEPR 522 (797)
T ss_pred CeEEEEecCccccCCC
Confidence 4799999999999753
No 350
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=25.29 E-value=38 Score=38.27 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=13.7
Q ss_pred ceEEEEecCCcccccc
Q 017455 84 DLAVLLEVDGVLVDAY 99 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~ 99 (371)
-++++||+||||++..
T Consensus 591 ~RLlfLDyDGTLap~~ 606 (934)
T PLN03064 591 NRLLILGFNATLTEPV 606 (934)
T ss_pred ceEEEEecCceeccCC
Confidence 4799999999999754
No 351
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=25.26 E-value=4.3e+02 Score=22.51 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHh-----hHHHHHHcCCcEEEECCCCCCC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQS-----GVAGAQRIGMPCVVMRSRCITT 350 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~-----Di~aA~~aGm~~v~v~~~~~~~ 350 (371)
+...++..|+ ++.++.|=..+ -...|...|++++++.+.....
T Consensus 79 L~~~L~~~gi--~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as~ 126 (157)
T cd01012 79 FRKALKATGR--KQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGSR 126 (157)
T ss_pred HHHHHHhcCC--CEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCCC
Confidence 6677888876 57788885432 3667888899999998876543
No 352
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=25.07 E-value=5.2e+02 Score=24.57 Aligned_cols=102 Identities=20% Similarity=0.279 Sum_probs=66.5
Q ss_pred CCCCCCccHHHHHHHH---HHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchheeecchhHHhhhhccccccccccCC
Q 017455 181 KDAPLRPGVEDFVDDA---YNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSG 257 (371)
Q Consensus 181 ~~~~~~pgv~elL~~L---~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~~i~~~~~~~~~~f~~~v~g~~v~~~ 257 (371)
+.-.+.|+..++++.. -+.|+.|--+|+- +-..-+.++..|-.-....- .-|=+|.++.
T Consensus 108 d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~d----D~v~arrLee~GcaavMPl~------------aPIGSg~G~~-- 169 (262)
T COG2022 108 DEKTLLPDPIETLKAAEQLVKEGFVVLPYTTD----DPVLARRLEEAGCAAVMPLG------------APIGSGLGLQ-- 169 (262)
T ss_pred CCcccCCChHHHHHHHHHHHhCCCEEeeccCC----CHHHHHHHHhcCceEecccc------------ccccCCcCcC--
Confidence 3455889998887654 4679999999882 45566666766754332210 0111122221
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHhhccCccccCCCCCchhHHHHHHHHHHHHHcCCCCCcEEEEeC---CHhhHHHHH
Q 017455 258 VDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAG---SQSGVAGAQ 334 (371)
Q Consensus 258 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~KP~p~i~~p~~~~~~~~~~~~~~a~~~lgv~p~e~I~IgD---s~~Di~aA~ 334 (371)
+|+. ++.+.++..++ |.|+- +++|...|.
T Consensus 170 ------------------------------n~~~--------------l~iiie~a~VP----viVDAGiG~pSdAa~aM 201 (262)
T COG2022 170 ------------------------------NPYN--------------LEIIIEEADVP----VIVDAGIGTPSDAAQAM 201 (262)
T ss_pred ------------------------------CHHH--------------HHHHHHhCCCC----EEEeCCCCChhHHHHHH
Confidence 1112 78888888887 77774 468999999
Q ss_pred HcCCcEEEECCCCC
Q 017455 335 RIGMPCVVMRSRCI 348 (371)
Q Consensus 335 ~aGm~~v~v~~~~~ 348 (371)
+.|...|++++.-.
T Consensus 202 ElG~DaVL~NTAiA 215 (262)
T COG2022 202 ELGADAVLLNTAIA 215 (262)
T ss_pred hcccceeehhhHhh
Confidence 99999999986543
No 353
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=24.60 E-value=45 Score=33.34 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=14.0
Q ss_pred ceEEEEecCCcccccc
Q 017455 84 DLAVLLEVDGVLVDAY 99 (371)
Q Consensus 84 ~kaviFD~DGTL~d~~ 99 (371)
.|+++||.||||+...
T Consensus 2 ~k~l~lDrDgtl~~~~ 17 (354)
T PRK05446 2 QKILFIDRDGTLIEEP 17 (354)
T ss_pred CcEEEEeCCCCccCCC
Confidence 5799999999999863
No 354
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=24.25 E-value=96 Score=25.41 Aligned_cols=25 Identities=20% Similarity=0.048 Sum_probs=22.2
Q ss_pred CccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
.+.+.+.++.++++|.+++.+|+..
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (120)
T cd05710 60 TKETVAAAKFAKEKGATVIGLTDDE 84 (120)
T ss_pred ChHHHHHHHHHHHcCCeEEEEECCC
Confidence 5788889999999999999999954
No 355
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=24.24 E-value=3.4e+02 Score=25.19 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=19.6
Q ss_pred CCCCccHHHHHHHHHHCCCcEEEE
Q 017455 183 APLRPGVEDFVDDAYNEGIPLIVL 206 (371)
Q Consensus 183 ~~~~pgv~elL~~L~~~Gi~v~Iv 206 (371)
..+.+...++.+.|++.|+.+..+
T Consensus 9 TRp~~~~~~l~~~l~~~G~~~~~~ 32 (255)
T PRK05752 9 TRPAEECAALAASLAEAGIFSSSL 32 (255)
T ss_pred CCcHHHHHHHHHHHHHcCCCEEEc
Confidence 347788888999999999888775
No 356
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=23.40 E-value=1.2e+02 Score=30.15 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=31.7
Q ss_pred CCCchhHHHHHHHHHHHHH----cCCCCCcEEEEeCCHh-hHH
Q 017455 294 SSPESLDKIVAALRAGAEY----AEKPVRNCFLIAGSQS-GVA 331 (371)
Q Consensus 294 p~~~~~~~~~~~~~~a~~~----lgv~p~e~I~IgDs~~-Di~ 331 (371)
|-|+.+++.+.|+.++.+. .++++++++..|||.- ||.
T Consensus 138 ~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia 180 (336)
T KOG1515|consen 138 PFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIA 180 (336)
T ss_pred CCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHH
Confidence 5688899999999998874 7999999999999974 443
No 357
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=23.32 E-value=1.5e+02 Score=23.17 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=28.8
Q ss_pred HHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCccccchh
Q 017455 191 DFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKI 232 (371)
Q Consensus 191 elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~f~~ 232 (371)
++.+.++++|..+.++.- ......+++..|+.+.+..
T Consensus 66 ~~~~~~~~~~~~~~l~~~-----~~~~~~~l~~~~l~~~~~i 102 (108)
T TIGR00377 66 GRYKQVRRVGGQLVLVSV-----SPRVARLLDITGLLRIIPI 102 (108)
T ss_pred HHHHHHHhcCCEEEEEeC-----CHHHHHHHHHhChhheecc
Confidence 355677888998888775 5678889999999887764
No 358
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=23.22 E-value=6.3e+02 Score=24.40 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHh---hHHHHHHcCCcEEEECCCC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQS---GVAGAQRIGMPCVVMRSRC 347 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~---Di~aA~~aGm~~v~v~~~~ 347 (371)
+...+++.+ |+=++..||... ...+|...|++.+.+..+.
T Consensus 78 l~~~l~~~~--pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~ 120 (365)
T TIGR00236 78 LEELLLEEK--PDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL 120 (365)
T ss_pred HHHHHHHcC--CCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC
Confidence 444455544 666677788754 5667788899999886543
No 359
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=23.01 E-value=2e+02 Score=29.12 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=31.1
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHh--hHHHHHHcCCcEEEECC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQS--GVAGAQRIGMPCVVMRS 345 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~--Di~aA~~aGm~~v~v~~ 345 (371)
+..+++. |.+|++++|-|...+ +|..|.+.|+.+|.+.+
T Consensus 86 l~~al~a-G~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS 126 (394)
T COG0019 86 LELALAA-GFPPERIVFSGPAKSEEEIAFALELGIKLINVDS 126 (394)
T ss_pred HHHHHHc-CCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCC
Confidence 3444444 999999999888764 89999999999888874
No 360
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=22.88 E-value=1.6e+02 Score=27.23 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.5
Q ss_pred CCcc-HHHHHHHHHHCCCcEEEEcCCC
Q 017455 185 LRPG-VEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 185 ~~pg-v~elL~~L~~~Gi~v~IvTn~~ 210 (371)
++++ +.++++.+++.|+++++.||+.
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~ 109 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGF 109 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 5777 4689999999999999999965
No 361
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=22.04 E-value=7.8e+02 Score=24.35 Aligned_cols=36 Identities=8% Similarity=0.254 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcccc
Q 017455 190 EDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 229 (371)
Q Consensus 190 ~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~~~ 229 (371)
..++.+|+++|+.+.|.+-. ...+..+++.+|++..
T Consensus 17 k~~I~eL~~~GheV~it~R~----~~~~~~LL~~yg~~y~ 52 (335)
T PF04007_consen 17 KNIIRELEKRGHEVLITARD----KDETEELLDLYGIDYI 52 (335)
T ss_pred HHHHHHHHhCCCEEEEEEec----cchHHHHHHHcCCCeE
Confidence 45788999999999777752 4567888998888753
No 362
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=22.02 E-value=7e+02 Score=25.78 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
++..++..+.+ ++||.+. +-..|++.|++++-++
T Consensus 396 l~~~i~~~~pD----l~ig~~~-~~~~a~k~gIP~~~~~ 429 (466)
T TIGR01282 396 FEEFVEKLKPD----LVGSGIK-EKYVFQKMGVPFRQMH 429 (466)
T ss_pred HHHHHHHhCCC----EEEecCC-ccceeeecCCCccccc
Confidence 55666776666 8888885 5778889999986554
No 363
>PRK10537 voltage-gated potassium channel; Provisional
Probab=21.96 E-value=7.8e+02 Score=24.92 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=21.7
Q ss_pred HHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEEC
Q 017455 310 AEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 344 (371)
Q Consensus 310 ~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~ 344 (371)
++.++ +.-+++..-+...+.+..+++|...|..+
T Consensus 323 ar~l~-p~~kIIa~v~~~~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 323 AKEMS-SDVKTVAAVNDSKNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHhC-CCCcEEEEECCHHHHHHHHhcCCCEEECH
Confidence 45555 22356666666667777788888777654
No 364
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=21.88 E-value=1.9e+02 Score=33.89 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=16.9
Q ss_pred HHHHHHHHCCCcEEEEcCC
Q 017455 191 DFVDDAYNEGIPLIVLTAY 209 (371)
Q Consensus 191 elL~~L~~~Gi~v~IvTn~ 209 (371)
=||++|+..|+++-|+|-.
T Consensus 1267 iLLqQLk~eghRvLIfTQM 1285 (1958)
T KOG0391|consen 1267 ILLQQLKSEGHRVLIFTQM 1285 (1958)
T ss_pred HHHHHHHhcCceEEehhHH
Confidence 4789999999999999974
No 365
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=21.81 E-value=1.4e+02 Score=28.37 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=23.8
Q ss_pred CCCCccH-HHHHHHHHHCCCcEEEEcCCC
Q 017455 183 APLRPGV-EDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 183 ~~~~pgv-~elL~~L~~~Gi~v~IvTn~~ 210 (371)
.-++|.. .++++.+++.|+++.+.||+.
T Consensus 136 Pll~~~~l~~l~~~~k~~g~~~~i~TnG~ 164 (295)
T TIGR02494 136 PLLQPEFALALLQACHERGIHTAVETSGF 164 (295)
T ss_pred hhchHHHHHHHHHHHHHcCCcEeeeCCCC
Confidence 3367775 699999999999999999975
No 366
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=21.80 E-value=8.7e+02 Score=25.45 Aligned_cols=36 Identities=19% Similarity=0.440 Sum_probs=24.7
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR 346 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~ 346 (371)
++..+++.+.+ ++||++ ..-..|++.|++++.+..+
T Consensus 354 l~~~i~~~~Pd----liiG~~-~er~~a~~lgiP~~~i~~P 389 (519)
T PRK02910 354 VEDAIAEAAPE----LVLGTQ-MERHSAKRLGIPCAVISAP 389 (519)
T ss_pred HHHHHHhcCCC----EEEEcc-hHHHHHHHcCCCEEEeccc
Confidence 34445555433 777887 5666888999999988543
No 367
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=21.76 E-value=3.2e+02 Score=26.88 Aligned_cols=25 Identities=16% Similarity=-0.059 Sum_probs=22.1
Q ss_pred CccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
-|-+..+++.|+++|++++|+|-+-
T Consensus 51 TP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 51 TPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred hHHHHHHHHHHHhcCCceEEEcCCC
Confidence 5778899999999999999999743
No 368
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.72 E-value=95 Score=23.11 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred CccHHHHHHHHHHCCCcEEEEc
Q 017455 186 RPGVEDFVDDAYNEGIPLIVLT 207 (371)
Q Consensus 186 ~pgv~elL~~L~~~Gi~v~IvT 207 (371)
.+.+.++++.++++|.+++.+|
T Consensus 60 t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 60 TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CHHHHHHHHHHHHcCCeEEEEe
Confidence 4779999999999999999988
No 369
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.56 E-value=1.1e+02 Score=26.84 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=22.6
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
-.+.+.++++.++++|.+++.+|+..
T Consensus 84 ~t~~~i~~~~~ak~~g~~ii~IT~~~ 109 (179)
T TIGR03127 84 ETESLVTVAKKAKEIGATVAAITTNP 109 (179)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 35778899999999999999999954
No 370
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.53 E-value=5.8e+02 Score=23.69 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=22.4
Q ss_pred CcEEEEeCCHh---hHHHHHHcCCcEEEECCCCC
Q 017455 318 RNCFLIAGSQS---GVAGAQRIGMPCVVMRSRCI 348 (371)
Q Consensus 318 ~e~I~IgDs~~---Di~aA~~aGm~~v~v~~~~~ 348 (371)
+--|.+|-+.+ ++..+..+ ...+.+++...
T Consensus 187 ~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 187 DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHH
Confidence 44488888776 68888888 88999986543
No 371
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=21.23 E-value=2.3e+02 Score=23.57 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEEe--CCHhh----HHHHHHcCCcEEEEC
Q 017455 299 LDKIVAALRAGAEYAEKPVRNCFLIA--GSQSG----VAGAQRIGMPCVVMR 344 (371)
Q Consensus 299 ~~~~~~~~~~a~~~lgv~p~e~I~Ig--Ds~~D----i~aA~~aGm~~v~v~ 344 (371)
...+..+++.+++..|+++..+-.|. |...| ++.|+..|++.+++.
T Consensus 14 ~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~~A~~l~~~~~~~~ 65 (121)
T PF01890_consen 14 AEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLELAEELGIPLRFFS 65 (121)
T ss_dssp HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHHHHHHCTSEEEEE-
T ss_pred HHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHHHHHHhCCCeEEEC
Confidence 34566779999999999998876555 55554 789999999999985
No 372
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.01 E-value=8.8e+02 Score=24.58 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCCCcEEEEeCCHhhHHHHHHcCCcEEEECCC
Q 017455 306 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR 346 (371)
Q Consensus 306 ~~~a~~~lgv~p~e~I~IgDs~~Di~aA~~aGm~~v~v~~~ 346 (371)
++..+++.+.+ ++||.+. +-..|++.|++++-+...
T Consensus 361 ~~~~i~~~~pD----liig~~~-~~~~a~k~giP~~~~~~~ 396 (421)
T cd01976 361 LEEFVKRLKPD----LIGSGIK-EKYVFQKMGIPFRQMHSW 396 (421)
T ss_pred HHHHHHHhCCC----EEEecCc-chhhhhhcCCCeEeCCcc
Confidence 45556666655 8889886 777899999999877643
No 373
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=20.61 E-value=1.1e+02 Score=26.68 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCccHHHHHHHHHHCCCcEEEEcCCC
Q 017455 185 LRPGVEDFVDDAYNEGIPLIVLTAYG 210 (371)
Q Consensus 185 ~~pgv~elL~~L~~~Gi~v~IvTn~~ 210 (371)
-.+.+.++++.++++|.+++.+|+..
T Consensus 113 ~t~~~i~~~~~ak~~Ga~vI~IT~~~ 138 (177)
T cd05006 113 NSPNVLKALEAAKERGMKTIALTGRD 138 (177)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45899999999999999999999954
No 374
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=20.59 E-value=8.1e+02 Score=24.16 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.7
Q ss_pred EEEeCCHhhHHHHHHcCCcEEEECC
Q 017455 321 FLIAGSQSGVAGAQRIGMPCVVMRS 345 (371)
Q Consensus 321 I~IgDs~~Di~aA~~aGm~~v~v~~ 345 (371)
++|+||-..+.-|-..|.++|.++.
T Consensus 284 ~vitdSSggi~EA~~lg~Pvv~l~~ 308 (365)
T TIGR03568 284 AVIGNSSSGIIEAPSFGVPTINIGT 308 (365)
T ss_pred EEEEcChhHHHhhhhcCCCEEeecC
Confidence 7899998889999999999999874
No 375
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=20.54 E-value=1.8e+02 Score=25.55 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHCCCcEEEEcCCCCCCcHHHHHHHHHcCcc
Q 017455 188 GVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 227 (371)
Q Consensus 188 gv~elL~~L~~~Gi~v~IvTn~~~~~~~~~~~~l~~lgl~ 227 (371)
.+-++++...+.|+++.|+|+ ...++++++....+
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~G-----gt~ar~~ik~~~p~ 108 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATG-----GTLARKIIKEYRPK 108 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcC-----hHHHHHHHHHhCCC
Confidence 577888888899999999999 46788888887776
No 376
>PLN03017 trehalose-phosphatase
Probab=20.26 E-value=2.2e+02 Score=28.74 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=11.5
Q ss_pred ceEEEEecCCccc
Q 017455 84 DLAVLLEVDGVLV 96 (371)
Q Consensus 84 ~kaviFD~DGTL~ 96 (371)
-.+|+||+||||+
T Consensus 111 ~~llflD~DGTL~ 123 (366)
T PLN03017 111 QIVMFLDYDGTLS 123 (366)
T ss_pred CeEEEEecCCcCc
Confidence 4688899999999
No 377
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.05 E-value=1.6e+02 Score=22.56 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=18.5
Q ss_pred cHHHHHHHHHHCCCcEEEEcC
Q 017455 188 GVEDFVDDAYNEGIPLIVLTA 208 (371)
Q Consensus 188 gv~elL~~L~~~Gi~v~IvTn 208 (371)
.+.++++.|+++|+++.++|+
T Consensus 54 ~~~~i~~~L~~~G~~~~~~~~ 74 (85)
T cd04906 54 ELAELLEDLKSAGYEVVDLSD 74 (85)
T ss_pred HHHHHHHHHHHCCCCeEECCC
Confidence 477889999999999998887
Done!