Query 017456
Match_columns 371
No_of_seqs 196 out of 420
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:43:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017456.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017456hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.2 9E-06 3.1E-10 66.8 9.4 68 114-181 37-105 (110)
2 2i68_A Protein EMRE; transmemb 98.1 5.8E-06 2E-10 70.8 7.5 67 115-181 38-105 (137)
3 2i68_A Protein EMRE; transmemb 96.6 0.0073 2.5E-07 51.4 8.4 69 275-347 35-104 (137)
4 3b5d_A Multidrug transporter E 94.5 0.42 1.4E-05 38.5 11.0 35 312-346 68-103 (110)
5 2zxe_G FXYD10, phospholemman-l 46.8 11 0.00039 28.2 2.4 37 331-368 25-61 (74)
6 3o7q_A L-fucose-proton symport 41.1 2.2E+02 0.0074 26.2 18.5 28 20-47 155-183 (438)
7 3hd6_A Ammonium transporter RH 24.4 5.5E+02 0.019 25.8 15.7 135 17-177 91-233 (490)
8 2jo1_A Phospholemman; FXYD1, N 24.0 59 0.002 24.1 3.0 19 331-349 22-40 (72)
9 3l1l_A Arginine/agmatine antip 20.8 63 0.0022 30.8 3.5 23 330-352 410-432 (445)
10 2jp3_A FXYD domain-containing 15.7 87 0.003 23.0 2.3 20 331-350 23-42 (67)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.16 E-value=9e-06 Score=66.83 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHHH-HHHhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhccc
Q 017456 114 GILTGLDNYLYAYGVARLPVSTSSLI-IASQLAFTAAFAFLLVKQKLTSYSLNAVFLLTLGAVVLGLHT 181 (371)
Q Consensus 114 G~l~~~~n~Ly~~gl~ylpvst~sli-~ssql~Ftalfs~l~~kek~t~~~i~~vvLl~~Ga~ll~~~~ 181 (371)
.+.++...+++.++++++|++.+.-+ ..+.++++++.+++++|||+|+.|+.|+++..+|++++...+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34557778889999999999999777 899999999999999999999999999999999998887543
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.11 E-value=5.8e-06 Score=70.77 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhccCCCChhHHHHH-HHHhHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhccc
Q 017456 115 ILTGLDNYLYAYGVARLPVSTSSLI-IASQLAFTAAFAFLLVKQKLTSYSLNAVFLLTLGAVVLGLHT 181 (371)
Q Consensus 115 ~l~~~~n~Ly~~gl~ylpvst~sli-~ssql~Ftalfs~l~~kek~t~~~i~~vvLl~~Ga~ll~~~~ 181 (371)
+.+++..++|.++++++|++.+..+ ....|++++++++++++|++|+.++.|+++..+|++++...+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4456778899999999999988777 899999999999999999999999999999999999887644
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.59 E-value=0.0073 Score=51.37 Aligned_cols=69 Identities=10% Similarity=0.002 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhchhhHHHHHHHHHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHhc
Q 017456 275 AVVVASALIWQCFFLGAIGVIYCGSSLLSAIIIAVLLPV-TEILAVIFYKEKFQAEKGVSLALSLWGFASYFYG 347 (371)
Q Consensus 275 ~~lv~~av~~q~~~~g~~Glv~~~ssl~~~vv~t~~lPv-t~ilavl~fge~~t~~k~ig~~Lvl~G~~~y~y~ 347 (371)
+.++..++++.+...++..+-. |.-+.+.. ..-|+ +.++++++|||+++..|++|+++++.|+......
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~---s~ay~iw~-~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPT---GIAYAIWS-GVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC--------CHHHHHH-HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCh---hHHHHHHH-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3355565665555554333311 21111212 33377 4599999999999999999999999999887654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=94.50 E-value=0.42 Score=38.54 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=31.3
Q ss_pred HH-HHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHh
Q 017456 312 PV-TEILAVIFYKEKFQAEKGVSLALSLWGFASYFY 346 (371)
Q Consensus 312 Pv-t~ilavl~fge~~t~~k~ig~~Lvl~G~~~y~y 346 (371)
|+ +.++++++|||++|..|++|.++++.|+.....
T Consensus 68 ~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 68 IVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 66 569999999999999999999999999887644
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=46.82 E-value=11 Score=28.19 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhccccchhhhhhhcCCCCCCCCC
Q 017456 331 GVSLALSLWGFASYFYGEIKNKKKMKKREQLPETEMPI 368 (371)
Q Consensus 331 ~ig~~Lvl~G~~~y~y~~~~~~~k~~~~~~~~~~~~~~ 368 (371)
+++++|.+.|+...+-++-+-+ .++|.++.++++..|
T Consensus 25 ifA~vLfi~GI~iilS~kcrCk-~~qk~~~~p~d~~a~ 61 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCRCK-FNQNKRTRSNSGTAT 61 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--------------------
T ss_pred hhHHHHHHHHHHHHHcCccccC-CCCCCCCCCCccccc
Confidence 5666777777777766655433 333333344444433
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=41.07 E-value=2.2e+02 Score=26.23 Aligned_cols=28 Identities=11% Similarity=0.016 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhhchHHHHHHHHH-hcCCc
Q 017456 20 LILNIILLAIGNCAGPLIMRLYF-LHGGK 47 (371)
Q Consensus 20 ~~~~~~~~~~g~~~~~Ll~r~y~-~~~g~ 47 (371)
..+......+|...++++..+.. +++++
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44556666777778888877766 55543
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=24.37 E-value=5.5e+02 Score=25.75 Aligned_cols=135 Identities=11% Similarity=0.107 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHh-cCCcc-hhHHHHHhhhchhhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCC
Q 017456 17 IALLILNIILLAIGNCAGPLIMRLYFL-HGGKR-IWFSSWLETAGCPVILIPITVSYLQRRRSGTTTDHESSTSSQPSNN 94 (371)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~~Ll~r~y~~-~~g~~-~w~~t~vq~agfp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (371)
|--+..|.++.+.|---+.|+..++.. |+|+= ..+-.+.| +-|-..-+.+..--.-.|-+
T Consensus 91 ~ssv~~n~l~~a~~~Qwa~l~~g~~~~~~~g~ip~~~~~~fq-~~Faa~t~~IvsGAvaeR~k----------------- 152 (490)
T 3hd6_A 91 FSAVGFNFLLAAFGIQWALLMQGWFHFLQDRYIVVGVENLIN-ADFCVASVCVAFGAVLGKVS----------------- 152 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCBTTTBEECCHHHHHH-HHHHHHHHHHHHHHHTTSSC-----------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHHHHH-HHHHHHHHHHHHHHHHhccc-----------------
Confidence 667778888888887778888888654 55543 33333444 35655443333211111111
Q ss_pred CCCccccCChhHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHHhHHHHHHHHHHHhccc--c----chhHHHHHH
Q 017456 95 DDNKLILMRPPVFFASAIIGILTGLDNYLYAYGVARLPVSTSSLIIASQLAFTAAFAFLLVKQK--L----TSYSLNAVF 168 (371)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~G~l~~~~n~Ly~~gl~ylpvst~sli~ssql~Ftalfs~l~~kek--~----t~~~i~~vv 168 (371)
+. ..+...++..+++..+.++|...+..+|.+-.+++|...-.+....++++-|++ - ....--++.
T Consensus 153 -------~~-~~li~~~l~~~vY~~~~w~~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~ 224 (490)
T 3hd6_A 153 -------PI-QLLIMTFFQVTLFAVNEFILLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDL 224 (490)
T ss_dssp -------HH-HHHHHHHHHHHHHHHHHHHHHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCTTGGGGTTTSSCCHHHHH
T ss_pred -------HH-HHHHHHHHHHHHHhhhHHHHHhccCceeecCceeeeHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCHH
Confidence 11 122233344566677777766678889999999999998888877777665331 0 111236677
Q ss_pred HHHHHHHHH
Q 017456 169 LLTLGAVVL 177 (371)
Q Consensus 169 Ll~~Ga~ll 177 (371)
+.++|+.+|
T Consensus 225 ~a~LGt~lL 233 (490)
T 3hd6_A 225 FAMIGTLFL 233 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888898876
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=24.03 E-value=59 Score=24.11 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 017456 331 GVSLALSLWGFASYFYGEI 349 (371)
Q Consensus 331 ~ig~~Lvl~G~~~y~y~~~ 349 (371)
++|+++.+.|+...+-++-
T Consensus 22 ifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcc
Confidence 4566666777766666554
No 9
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=20.76 E-value=63 Score=30.80 Aligned_cols=23 Identities=13% Similarity=-0.167 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhccccch
Q 017456 330 KGVSLALSLWGFASYFYGEIKNK 352 (371)
Q Consensus 330 k~ig~~Lvl~G~~~y~y~~~~~~ 352 (371)
-..+.++.+.|+..|.+.+++++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 34567777888888876554433
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=15.67 E-value=87 Score=22.96 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 017456 331 GVSLALSLWGFASYFYGEIK 350 (371)
Q Consensus 331 ~ig~~Lvl~G~~~y~y~~~~ 350 (371)
++|+++.+.|+...+-++-+
T Consensus 23 ifA~vLfi~GI~iilS~kcr 42 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCK 42 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 56667777777776665543
Done!