Query 017456
Match_columns 371
No_of_seqs 196 out of 420
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 14:43:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017456.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017456hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 16.9 62 0.0045 17.6 2.8 16 195-210 2-17 (27)
2 d1iwga8 f.35.1.1 (A:513-566,A: 16.1 2.5E+02 0.018 22.3 10.7 43 300-343 80-125 (222)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 13.6 3.3E+02 0.024 22.4 16.0 37 131-167 56-94 (447)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 8.7 4.7E+02 0.035 21.2 28.0 28 20-47 154-181 (447)
5 d1l7va_ f.22.1.1 (A:) ABC tran 5.7 7.4E+02 0.054 20.7 12.6 52 105-157 58-110 (324)
6 d1pv7a_ f.38.1.2 (A:) Lactose 4.4 7.4E+02 0.054 19.1 15.8 19 29-47 149-167 (417)
7 d2axtl1 f.23.31.1 (L:1-37) Pho 3.9 4.1E+02 0.03 15.3 3.8 25 188-212 11-35 (37)
8 d1gyta1 c.50.1.1 (A:1-178) Leu 3.8 1.9E+02 0.013 21.8 1.8 29 327-355 121-149 (178)
9 d1nkzb_ f.3.1.1 (B:) Light-har 3.6 3.4E+02 0.025 16.2 2.5 25 326-350 16-40 (41)
10 d3dtua1 f.24.1.1 (A:14-551) Ba 3.6 1.3E+03 0.094 20.7 9.6 32 230-262 438-469 (538)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.89 E-value=62 Score=17.65 Aligned_cols=16 Identities=13% Similarity=0.459 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 017456 195 LVGFLMTIGAAVLYGF 210 (371)
Q Consensus 195 ~~G~~l~l~Aa~~~al 210 (371)
.+|.+.+-.++++|+.
T Consensus 2 vlgli~~tl~glf~aa 17 (27)
T d2e74g1 2 VLGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 4788888889999998
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=16.08 E-value=2.5e+02 Score=22.33 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHhCCCCchhHHHHHHHHHHHHHH
Q 017456 300 SLLSAIIIAVLLPVTE---ILAVIFYKEKFQAEKGVSLALSLWGFAS 343 (371)
Q Consensus 300 sl~~~vv~t~~lPvt~---ilavl~fge~~t~~k~ig~~Lvl~G~~~ 343 (371)
|....++....+|++. +.+..+.+.+++....+|+++.+ |...
T Consensus 80 S~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~-Gi~v 125 (222)
T d1iwga8 80 SWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTI-GLSA 125 (222)
T ss_dssp SSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchh-hhhh
Confidence 4445555445556533 55666678999998877777755 4443
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=13.65 E-value=3.3e+02 Score=22.40 Aligned_cols=37 Identities=5% Similarity=0.054 Sum_probs=18.1
Q ss_pred CChhHHHHHHHHhHHHHHHHHHHH--hccccchhHHHHH
Q 017456 131 LPVSTSSLIIASQLAFTAAFAFLL--VKQKLTSYSLNAV 167 (371)
Q Consensus 131 lpvst~sli~ssql~Ftalfs~l~--~kek~t~~~i~~v 167 (371)
++.+...++.+...+..++++.+. +.+|+.++++..+
T Consensus 56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~ 94 (447)
T d1pw4a_ 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA 94 (447)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 344444555555554444444332 3466666665433
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.75 E-value=4.7e+02 Score=21.23 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhhchHHHHHHHHHhcCCc
Q 017456 20 LILNIILLAIGNCAGPLIMRLYFLHGGK 47 (371)
Q Consensus 20 ~~~~~~~~~~g~~~~~Ll~r~y~~~~g~ 47 (371)
..+......+|...++++.-+-.+..++
T Consensus 154 ~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 181 (447)
T d1pw4a_ 154 VSVWNCAHNVGGGIPPLLFLLGMAWFND 181 (447)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHTCC
T ss_pred ccccccccchhhhhhhhhhhhHhhhhhc
Confidence 3444455566777777777665554443
No 5
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=5.66 E-value=7.4e+02 Score=20.68 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCChhHHHHHHHH-hHHHHHHHHHHHhcc
Q 017456 105 PVFFASAIIGILTGLDNYLYAYGVARLPVSTSSLIIAS-QLAFTAAFAFLLVKQ 157 (371)
Q Consensus 105 ~~~~~~~~~G~l~~~~n~Ly~~gl~ylpvst~sli~ss-ql~Ftalfs~l~~ke 157 (371)
+....+++.|..++.-..+++ ++..=|.+.-.++--+ .-.+.++.+.++...
T Consensus 58 PR~l~a~l~Ga~La~sG~~lQ-~~~rNpLA~P~ilGissGA~l~~v~~~~~~~~ 110 (324)
T d1l7va_ 58 PRTLAVLLVGAALAISGAVMQ-ALFENPLAEPGLLGVSNGAGVGLIAAVLLGQG 110 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTCTTCCTTTTTHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhCCCCCCchHHHhhhHHHHHHHHHHHhccc
Confidence 456788888988899888888 4443333333333333 333444444444443
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.44 E-value=7.4e+02 Score=19.11 Aligned_cols=19 Identities=21% Similarity=0.408 Sum_probs=9.7
Q ss_pred hhhchHHHHHHHHHhcCCc
Q 017456 29 IGNCAGPLIMRLYFLHGGK 47 (371)
Q Consensus 29 ~g~~~~~Ll~r~y~~~~g~ 47 (371)
.|...++++.-+..+.++.
T Consensus 149 ~~~~~~~~~~~~l~~~~~~ 167 (417)
T d1pv7a_ 149 VGWALGASIVGIMFTINNQ 167 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHH
T ss_pred ccccccccccccccccccc
Confidence 3444555565555555443
No 7
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.90 E-value=4.1e+02 Score=15.32 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=19.2
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHH
Q 017456 188 NESARQYLVGFLMTIGAAVLYGFVL 212 (371)
Q Consensus 188 ~~s~~~~~~G~~l~l~Aa~~~alyl 212 (371)
+..+....+|.+++..-+++|+-|.
T Consensus 11 eLNrtsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 11 ELNRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHh
Confidence 4445566789999999888888765
No 8
>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase A), N-terminal domain {Escherichia coli, PepA [TaxId: 562]}
Probab=3.84 E-value=1.9e+02 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.097 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHhccccchhhh
Q 017456 327 QAEKGVSLALSLWGFASYFYGEIKNKKKM 355 (371)
Q Consensus 327 t~~k~ig~~Lvl~G~~~y~y~~~~~~~k~ 355 (371)
+....+..+.--+...+|-|.+|+.+|++
T Consensus 121 ~~~~~~~~~~~g~~l~~Y~f~~yKskk~~ 149 (178)
T d1gyta1 121 NNYWKVRQAVETAKETLYSFDQLKTNKSE 149 (178)
T ss_dssp CHHHHHHHHHHHHHHHHCCCCTTCSSCCC
T ss_pred CHHHHHHHHHHHHHhcCccccceecCCCC
Confidence 44445555555666788999999876544
No 9
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=3.63 E-value=3.4e+02 Score=16.16 Aligned_cols=25 Identities=4% Similarity=-0.142 Sum_probs=17.9
Q ss_pred CchhHHHHHHHHHHHHHHHHhcccc
Q 017456 326 FQAEKGVSLALSLWGFASYFYGEIK 350 (371)
Q Consensus 326 ~t~~k~ig~~Lvl~G~~~y~y~~~~ 350 (371)
+++.++++.+-++.=+..|.|.++.
T Consensus 16 IdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 16 IDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred hcchHHHHHHHHHHHHHHHHhCccc
Confidence 4566777777777777888777653
No 10
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.60 E-value=1.3e+03 Score=20.73 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchhhhhhh
Q 017456 230 LVLEIQMVMCLFATLVCTVGMVVNKDFQAIGKE 262 (371)
Q Consensus 230 ~vle~q~~~slvat~~~~vg~~~~g~~~~l~~e 262 (371)
...++++|...++.......+...|- ..+|+.
T Consensus 438 ~l~~~hfwl~~iG~~l~f~pm~~~Gl-~GmpRR 469 (538)
T d3dtua1 438 WAGKLHFWMMFVGANLTFFPQHFLGR-QGMPRR 469 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCCccc
Confidence 45689999999888888877777763 455553
Done!