Query 017459
Match_columns 371
No_of_seqs 302 out of 1776
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1169 Diacylglycerol kinase 100.0 2.5E-56 5.4E-61 457.0 15.5 293 28-366 214-513 (634)
2 KOG0782 Predicted diacylglycer 100.0 7.6E-50 1.6E-54 398.1 11.0 268 29-344 301-581 (1004)
3 PRK12361 hypothetical protein; 100.0 6.1E-34 1.3E-38 297.3 18.9 242 12-325 163-416 (547)
4 PRK00861 putative lipid kinase 100.0 9.4E-30 2E-34 246.9 17.4 171 80-325 2-172 (300)
5 PRK11914 diacylglycerol kinase 100.0 2.1E-29 4.6E-34 245.1 18.7 177 78-323 6-182 (306)
6 COG1597 LCB5 Sphingosine kinas 100.0 1.7E-29 3.7E-34 245.6 16.4 178 80-329 2-180 (301)
7 PRK13055 putative lipid kinase 100.0 4.7E-29 1E-33 245.8 17.2 175 80-324 2-177 (334)
8 PRK13059 putative lipid kinase 100.0 6.6E-29 1.4E-33 240.8 17.1 173 80-325 1-173 (295)
9 PRK13057 putative lipid kinase 100.0 8.4E-29 1.8E-33 238.9 16.8 164 84-324 1-164 (287)
10 PRK13337 putative lipid kinase 100.0 1.4E-28 3E-33 239.3 17.0 171 80-322 1-171 (304)
11 TIGR03702 lip_kinase_YegS lipi 100.0 6.8E-28 1.5E-32 233.4 16.3 169 82-322 1-169 (293)
12 PLN02958 diacylglycerol kinase 100.0 1.1E-27 2.4E-32 246.2 18.3 181 78-323 109-294 (481)
13 PRK13054 lipid kinase; Reviewe 100.0 1.4E-27 3.1E-32 231.8 17.4 173 79-324 2-175 (300)
14 TIGR00147 lipid kinase, YegS/R 99.9 7.6E-27 1.7E-31 225.5 17.1 173 80-324 1-174 (293)
15 KOG1170 Diacylglycerol kinase 99.9 7.8E-28 1.7E-32 248.2 1.3 133 78-231 192-324 (1099)
16 PLN02204 diacylglycerol kinase 99.9 9.1E-25 2E-29 225.9 18.6 196 76-324 155-417 (601)
17 PF00781 DAGK_cat: Diacylglyce 99.9 1.2E-22 2.5E-27 173.9 12.9 126 82-230 1-127 (130)
18 KOG1116 Sphingosine kinase, in 99.9 1.9E-22 4.2E-27 205.4 11.1 226 19-299 114-348 (579)
19 smart00046 DAGKc Diacylglycero 99.9 8.7E-22 1.9E-26 167.8 11.9 101 84-201 1-101 (124)
20 PF00609 DAGK_acc: Diacylglyce 99.6 8.5E-16 1.9E-20 136.7 3.8 80 274-366 1-80 (161)
21 KOG1115 Ceramide kinase [Lipid 99.5 1.8E-13 4E-18 134.2 9.2 185 74-319 152-348 (516)
22 KOG4435 Predicted lipid kinase 99.2 9.3E-11 2E-15 115.2 11.5 137 74-227 54-195 (535)
23 PRK03708 ppnK inorganic polyph 98.4 1.7E-06 3.8E-11 83.5 11.6 123 81-232 1-124 (277)
24 PRK02645 ppnK inorganic polyph 98.4 2.4E-06 5.2E-11 83.7 11.6 125 79-233 2-128 (305)
25 smart00045 DAGKa Diacylglycero 98.1 4.8E-07 1E-11 80.2 -0.2 49 274-322 1-49 (160)
26 PRK03378 ppnK inorganic polyph 97.9 0.00017 3.7E-09 70.3 12.0 127 79-232 4-131 (292)
27 COG3199 Predicted inorganic po 97.8 0.0001 2.3E-09 72.3 10.1 58 147-220 100-157 (355)
28 PRK01231 ppnK inorganic polyph 97.6 0.00084 1.8E-08 65.6 12.8 128 79-233 3-131 (295)
29 PRK02155 ppnK NAD(+)/NADH kina 97.3 0.0043 9.4E-08 60.5 13.6 128 80-233 5-132 (291)
30 PRK14077 pnk inorganic polypho 97.3 0.0042 9.2E-08 60.4 13.2 126 77-232 7-132 (287)
31 PF01513 NAD_kinase: ATP-NAD k 97.2 0.0017 3.7E-08 63.0 9.6 70 146-232 75-144 (285)
32 PRK03372 ppnK inorganic polyph 97.2 0.0082 1.8E-07 59.0 13.8 126 78-232 3-140 (306)
33 PRK04539 ppnK inorganic polyph 97.0 0.01 2.2E-07 58.1 12.8 129 78-232 3-136 (296)
34 PRK02649 ppnK inorganic polyph 97.0 0.014 3.1E-07 57.3 13.2 130 80-232 1-136 (305)
35 PRK03501 ppnK inorganic polyph 96.9 0.016 3.4E-07 55.8 12.4 107 80-232 2-109 (264)
36 PRK01911 ppnK inorganic polyph 96.7 0.032 6.9E-07 54.5 12.9 123 82-233 2-133 (292)
37 PLN02935 Bifunctional NADH kin 96.6 0.042 9.1E-07 57.2 13.6 134 78-231 192-329 (508)
38 PRK04885 ppnK inorganic polyph 96.0 0.1 2.2E-06 50.3 12.0 103 82-231 2-104 (265)
39 PRK14075 pnk inorganic polypho 95.9 0.2 4.3E-06 48.0 13.5 67 147-233 41-107 (256)
40 PRK14076 pnk inorganic polypho 95.6 0.2 4.4E-06 53.3 13.5 123 80-231 290-415 (569)
41 PRK00561 ppnK inorganic polyph 95.6 0.18 3.9E-06 48.5 11.8 64 147-227 33-97 (259)
42 PRK01185 ppnK inorganic polyph 95.3 0.29 6.2E-06 47.4 12.5 117 82-233 2-118 (271)
43 PLN02727 NAD kinase 95.1 0.21 4.5E-06 55.4 11.7 116 78-222 676-801 (986)
44 PLN02929 NADH kinase 94.4 0.24 5.2E-06 48.6 9.2 76 146-232 63-149 (301)
45 COG0061 nadF NAD kinase [Coenz 94.3 0.66 1.4E-05 45.0 12.1 72 146-234 54-125 (281)
46 PRK02231 ppnK inorganic polyph 93.9 0.35 7.5E-06 46.8 9.1 69 147-232 42-111 (272)
47 PRK04761 ppnK inorganic polyph 92.3 0.28 6.1E-06 46.8 5.7 36 146-188 24-59 (246)
48 KOG2178 Predicted sugar kinase 83.2 2.2 4.7E-05 43.1 5.4 60 147-223 168-227 (409)
49 cd08197 DOIS 2-deoxy-scyllo-in 83.0 3.5 7.5E-05 41.4 6.9 96 81-191 24-125 (355)
50 PF00731 AIRC: AIR carboxylase 82.8 7.4 0.00016 34.4 8.0 79 92-188 8-88 (150)
51 PF10254 Pacs-1: PACS-1 cytoso 82.4 4.4 9.5E-05 41.5 7.3 50 148-198 76-128 (414)
52 cd08170 GlyDH Glycerol dehydro 81.8 9 0.0002 38.0 9.4 94 81-194 23-119 (351)
53 cd08194 Fe-ADH6 Iron-containin 78.9 12 0.00025 37.7 9.1 100 81-193 24-139 (375)
54 cd08171 GlyDH-like2 Glycerol d 78.9 12 0.00025 37.2 9.0 92 81-192 23-118 (345)
55 cd08186 Fe-ADH8 Iron-containin 78.8 10 0.00022 38.3 8.6 105 80-196 26-147 (383)
56 cd08172 GlyDH-like1 Glycerol d 77.2 15 0.00033 36.4 9.3 92 81-193 24-117 (347)
57 cd08169 DHQ-like Dehydroquinat 77.0 8.5 0.00018 38.4 7.4 97 80-191 23-124 (344)
58 cd07766 DHQ_Fe-ADH Dehydroquin 77.0 8.2 0.00018 37.8 7.2 92 80-189 23-117 (332)
59 cd08180 PDD 1,3-propanediol de 74.6 12 0.00026 36.9 7.7 99 81-192 23-125 (332)
60 cd08187 BDH Butanol dehydrogen 73.0 19 0.0004 36.3 8.8 104 81-196 29-148 (382)
61 cd08181 PPD-like 1,3-propanedi 72.9 13 0.00029 37.0 7.6 103 81-195 26-143 (357)
62 TIGR03405 Phn_Fe-ADH phosphona 72.8 24 0.00051 35.3 9.4 104 81-195 24-145 (355)
63 cd08179 NADPH_BDH NADPH-depend 71.1 20 0.00044 35.9 8.5 103 81-195 24-145 (375)
64 KOG4180 Predicted kinase [Gene 70.8 2.4 5.3E-05 41.8 1.7 75 145-233 103-179 (395)
65 cd08195 DHQS Dehydroquinate sy 70.5 12 0.00026 37.1 6.7 95 80-186 24-119 (345)
66 cd08173 Gro1PDH Sn-glycerol-1- 69.9 33 0.00072 33.9 9.6 88 81-189 26-113 (339)
67 PRK00002 aroB 3-dehydroquinate 69.8 14 0.00031 36.8 7.0 97 80-191 31-133 (358)
68 PRK09423 gldA glycerol dehydro 69.3 37 0.00081 33.9 10.0 94 81-194 30-126 (366)
69 cd08174 G1PDH-like Glycerol-1- 68.9 30 0.00064 34.0 9.0 34 147-187 75-108 (331)
70 cd08551 Fe-ADH iron-containing 68.7 15 0.00032 36.8 6.9 101 80-193 23-139 (370)
71 COG1454 EutG Alcohol dehydroge 67.8 30 0.00066 35.1 8.9 107 79-198 28-150 (377)
72 cd08176 LPO Lactadehyde:propan 67.8 17 0.00036 36.6 7.1 104 81-197 29-148 (377)
73 cd08185 Fe-ADH1 Iron-containin 67.0 19 0.00042 36.1 7.4 105 81-197 26-151 (380)
74 cd08177 MAR Maleylacetate redu 66.6 26 0.00056 34.6 8.1 91 81-191 24-115 (337)
75 PRK15138 aldehyde reductase; P 66.6 29 0.00062 35.2 8.5 105 81-197 30-151 (387)
76 cd08550 GlyDH-like Glycerol_de 66.4 31 0.00067 34.2 8.6 93 81-193 23-118 (349)
77 cd08192 Fe-ADH7 Iron-containin 66.4 33 0.00071 34.3 8.9 100 81-193 25-144 (370)
78 PRK09860 putative alcohol dehy 65.6 37 0.0008 34.3 9.1 106 80-198 31-152 (383)
79 PF00782 DSPc: Dual specificit 63.1 5.4 0.00012 33.3 2.2 35 14-48 63-98 (133)
80 TIGR01357 aroB 3-dehydroquinat 63.0 23 0.00049 35.1 6.9 91 81-186 21-115 (344)
81 TIGR02638 lactal_redase lactal 62.4 40 0.00086 33.9 8.6 104 80-196 29-150 (379)
82 PLN00180 NDF6 (NDH-dependent f 60.4 1.8 4E-05 38.1 -1.2 13 153-165 130-142 (180)
83 PF13685 Fe-ADH_2: Iron-contai 59.2 16 0.00034 35.0 4.8 94 80-191 19-112 (250)
84 PRK06203 aroB 3-dehydroquinate 58.6 74 0.0016 32.4 9.8 99 80-186 42-145 (389)
85 COG2453 CDC14 Predicted protei 56.9 6.9 0.00015 35.2 1.9 36 13-48 94-130 (180)
86 cd08178 AAD_C C-terminal alcoh 56.4 51 0.0011 33.4 8.3 75 81-168 22-98 (398)
87 PF00465 Fe-ADH: Iron-containi 56.1 36 0.00079 33.8 7.1 104 82-198 23-143 (366)
88 TIGR01162 purE phosphoribosyla 55.6 81 0.0018 28.1 8.3 75 98-189 12-87 (156)
89 smart00195 DSPc Dual specifici 55.6 7.6 0.00016 32.7 1.8 35 14-48 68-103 (138)
90 cd08183 Fe-ADH2 Iron-containin 55.6 90 0.002 31.3 9.8 98 81-194 23-139 (374)
91 cd08198 DHQS-like2 Dehydroquin 55.1 1E+02 0.0022 31.2 10.0 100 80-187 30-134 (369)
92 TIGR02483 PFK_mixed phosphofru 54.2 29 0.00064 34.4 6.0 45 146-198 93-140 (324)
93 PTZ00286 6-phospho-1-fructokin 54.0 33 0.00071 35.8 6.5 50 147-198 176-228 (459)
94 cd08184 Fe-ADH3 Iron-containin 53.7 58 0.0012 32.5 8.0 51 147-198 81-145 (347)
95 PRK15454 ethanol dehydrogenase 53.4 55 0.0012 33.3 7.9 91 98-198 64-170 (395)
96 PRK06756 flavodoxin; Provision 52.4 79 0.0017 26.9 7.8 29 80-110 1-29 (148)
97 cd08188 Fe-ADH4 Iron-containin 50.8 99 0.0022 31.0 9.3 48 146-194 84-145 (377)
98 PRK10624 L-1,2-propanediol oxi 50.0 59 0.0013 32.7 7.5 105 80-197 30-152 (382)
99 cd08182 HEPD Hydroxyethylphosp 49.2 1.2E+02 0.0027 30.1 9.7 45 147-192 77-139 (367)
100 PLN02834 3-dehydroquinate synt 49.0 57 0.0012 33.7 7.3 94 81-187 101-198 (433)
101 cd08549 G1PDH_related Glycerol 49.0 73 0.0016 31.4 7.8 85 81-186 25-112 (332)
102 PRK00843 egsA NAD(P)-dependent 48.4 77 0.0017 31.5 8.0 86 81-188 35-121 (350)
103 cd08199 EEVS 2-epi-5-epi-valio 48.2 54 0.0012 32.8 6.9 95 80-186 26-122 (354)
104 PRK06830 diphosphate--fructose 46.9 45 0.00098 34.6 6.1 50 147-198 172-224 (443)
105 cd08189 Fe-ADH5 Iron-containin 46.8 1.1E+02 0.0024 30.7 8.9 103 80-195 26-145 (374)
106 PLN02564 6-phosphofructokinase 46.5 43 0.00093 35.2 5.9 45 147-193 176-220 (484)
107 PF12219 End_tail_spike: Catal 46.4 10 0.00022 32.9 1.1 14 148-161 85-98 (160)
108 cd08175 G1PDH Glycerol-1-phosp 46.1 58 0.0013 32.2 6.7 88 81-187 24-113 (348)
109 PRK10586 putative oxidoreducta 45.1 1.7E+02 0.0037 29.4 9.9 37 147-190 86-122 (362)
110 TIGR02482 PFKA_ATP 6-phosphofr 43.5 1E+02 0.0023 30.2 7.9 42 146-194 90-131 (301)
111 PRK14021 bifunctional shikimat 41.8 1.2E+02 0.0027 32.1 8.7 36 146-186 268-303 (542)
112 cd00127 DSPc Dual specificity 41.3 18 0.0004 30.1 2.0 34 15-48 72-106 (139)
113 cd08191 HHD 6-hydroxyhexanoate 40.7 1.7E+02 0.0037 29.5 9.2 102 81-195 23-140 (386)
114 cd08193 HVD 5-hydroxyvalerate 40.7 1.5E+02 0.0032 29.7 8.7 102 80-194 26-143 (376)
115 cd00763 Bacterial_PFK Phosphof 39.6 1.4E+02 0.0029 29.6 8.0 41 146-194 91-131 (317)
116 cd01836 FeeA_FeeB_like SGNH_hy 39.0 75 0.0016 27.8 5.7 59 150-219 44-102 (191)
117 cd08190 HOT Hydroxyacid-oxoaci 38.9 1.6E+02 0.0035 30.0 8.7 103 81-196 24-148 (414)
118 COG0337 AroB 3-dehydroquinate 38.9 2.3E+02 0.0051 28.6 9.6 97 77-186 30-128 (360)
119 cd00363 PFK Phosphofructokinas 38.4 1.4E+02 0.003 29.8 8.0 45 146-193 91-136 (338)
120 PRK09267 flavodoxin FldA; Vali 38.2 2.2E+02 0.0049 24.7 8.6 28 80-109 1-28 (169)
121 PRK14072 6-phosphofructokinase 37.0 89 0.0019 32.1 6.5 47 146-194 102-148 (416)
122 KOG1719 Dual specificity phosp 36.6 23 0.0005 31.7 1.8 39 10-48 95-134 (183)
123 PRK05948 precorrin-2 methyltra 36.4 1.7E+02 0.0037 27.6 7.9 48 146-198 91-143 (238)
124 TIGR00730 conserved hypothetic 36.4 46 0.00099 30.1 3.8 48 128-187 18-66 (178)
125 cd00764 Eukaryotic_PFK Phospho 36.4 1.4E+02 0.0029 33.4 8.1 47 146-193 477-523 (762)
126 cd08196 DHQS-like1 Dehydroquin 36.1 2E+02 0.0044 28.7 8.8 78 81-169 20-97 (346)
127 PRK03202 6-phosphofructokinase 35.4 1.6E+02 0.0034 29.2 7.8 41 146-194 92-132 (320)
128 PRK00536 speE spermidine synth 34.8 28 0.00062 33.5 2.3 19 146-164 72-91 (262)
129 PRK14071 6-phosphofructokinase 34.6 1E+02 0.0022 31.1 6.3 46 146-198 106-154 (360)
130 PRK13805 bifunctional acetalde 33.7 2E+02 0.0042 32.5 9.1 75 80-167 480-558 (862)
131 COG1979 Uncharacterized oxidor 32.2 1.1E+02 0.0024 30.7 6.0 76 78-164 27-106 (384)
132 cd04502 SGNH_hydrolase_like_7 31.3 70 0.0015 27.6 4.1 58 152-219 28-85 (171)
133 PLN02948 phosphoribosylaminoim 30.4 2.9E+02 0.0062 29.7 9.3 87 82-189 412-499 (577)
134 TIGR02478 6PF1K_euk 6-phosphof 30.2 99 0.0022 34.3 5.9 46 147-193 478-523 (745)
135 PRK06555 pyrophosphate--fructo 27.5 2.4E+02 0.0053 28.9 7.7 45 146-193 111-156 (403)
136 PLN02884 6-phosphofructokinase 27.5 1E+02 0.0023 31.6 5.1 45 146-193 142-187 (411)
137 cd01844 SGNH_hydrolase_like_6 26.4 1.3E+02 0.0029 26.1 5.1 55 150-219 35-89 (177)
138 COG1691 NCAIR mutase (PurE)-re 25.8 59 0.0013 30.8 2.7 34 147-189 173-206 (254)
139 PTZ00393 protein tyrosine phos 25.7 42 0.00092 32.0 1.8 33 15-47 161-194 (241)
140 COG0371 GldA Glycerol dehydrog 25.0 3.4E+02 0.0073 27.5 8.1 94 81-195 31-125 (360)
141 PF05893 LuxC: Acyl-CoA reduct 24.7 1.1E+02 0.0023 31.3 4.6 42 146-187 167-209 (399)
142 cd01831 Endoglucanase_E_like E 24.6 1.3E+02 0.0027 26.0 4.5 48 148-219 45-92 (169)
143 TIGR01752 flav_long flavodoxin 23.6 4.9E+02 0.011 22.6 8.9 25 83-109 2-26 (167)
144 COG0205 PfkA 6-phosphofructoki 23.4 6.1E+02 0.013 25.5 9.5 41 146-193 93-133 (347)
145 COG1646 Predicted phosphate-bi 23.3 3.6E+02 0.0078 25.7 7.4 77 100-189 4-81 (240)
146 PRK07085 diphosphate--fructose 23.1 1.3E+02 0.0028 32.3 5.0 50 147-198 164-218 (555)
147 TIGR00725 conserved hypothetic 22.8 1E+02 0.0022 27.2 3.5 49 128-188 17-65 (159)
148 TIGR03590 PseG pseudaminic aci 22.4 2.6E+02 0.0055 26.7 6.6 29 146-186 240-268 (279)
149 cd02007 TPP_DXS Thiamine pyrop 22.2 2.9E+02 0.0062 25.0 6.6 64 148-218 97-177 (195)
150 PF00365 PFK: Phosphofructokin 22.2 87 0.0019 30.4 3.3 42 146-194 91-132 (282)
151 PRK11866 2-oxoacid ferredoxin 22.1 74 0.0016 30.9 2.7 23 146-168 75-98 (279)
152 PLN03028 pyrophosphate--fructo 22.0 1.3E+02 0.0029 32.5 4.9 50 147-198 173-227 (610)
153 TIGR02477 PFKA_PPi diphosphate 21.5 1.7E+02 0.0037 31.2 5.5 46 147-194 161-206 (539)
154 PF03641 Lysine_decarbox: Poss 21.2 1E+02 0.0022 26.2 3.1 35 150-185 57-91 (133)
155 TIGR02478 6PF1K_euk 6-phosphof 21.1 2.8E+02 0.0061 30.9 7.2 48 146-193 93-155 (745)
156 TIGR00725 conserved hypothetic 20.5 1.2E+02 0.0027 26.6 3.6 29 149-185 94-122 (159)
157 cd01839 SGNH_arylesterase_like 20.3 1.6E+02 0.0036 26.1 4.5 39 177-219 78-116 (208)
No 1
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-56 Score=457.02 Aligned_cols=293 Identities=36% Similarity=0.594 Sum_probs=235.3
Q ss_pred EEeeccccccccchhhhhhHHhhHHHhhhcCCCCCCCCC------CCceecCCCCCCCCCcEEEEEcCCCCCCChhhHHH
Q 017459 28 MRIDKEDLRRKLSIPEYLRVAMSNAIRRKEGEPPADTCQ------SDVIVDGNGVQPPEAPMVVFINSRSGGRHGPELKE 101 (371)
Q Consensus 28 ~~~~~~~~r~~~~~p~yl~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~llviiNP~SG~~~g~~l~~ 101 (371)
.+||++.+++++.+|.+++.+....+ .++.+....... ...+.+.....++..|++||+||||||++|+.+.+
T Consensus 214 ~~~~~~~~~~~i~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PLlVfvNpKSGg~~G~~ll~ 292 (634)
T KOG1169|consen 214 QECDLGELKDHILPPSTLRPARTARV-ASDHSGLPGEKSEEVTDAKKMQQLLVTDPPDWRPLLVFVNPKSGGQQGERLLR 292 (634)
T ss_pred hhccChhhhhccCCceeeeccccccc-ccccccccccccccccccccccccccCCCCCCcceEEEEecCCcccccHHHHH
Confidence 38999999999999999998766521 001111100000 00111235667889999999999999999999999
Q ss_pred HHHHHhhhcCeeEEEeec-ccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCc
Q 017459 102 RLQELMGKEQVFDLSEVK-PHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPP 180 (371)
Q Consensus 102 ~l~~~L~~~~v~dl~~~~-p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~p 180 (371)
+++.+|++.|||||...+ |... ..+..+ .+..+|+||||||||+||++++.++...+..+.||
T Consensus 293 ~f~~lLnp~QVfdl~~~~~p~~g--------L~l~~~--------~~~~riLVcGGDGTvGWVL~~i~~~n~~~~~~~Pp 356 (634)
T KOG1169|consen 293 RFRYLLNPVQVFDLLKRGGPRPG--------LTLFRD--------VPDFRILVCGGDGTVGWVLGCIDKLNKQNAIPPPP 356 (634)
T ss_pred HHHHhcChhhEEecccCCCCchh--------HHHHHh--------CCcceEEEecCCCcchhhhhhHHHhhccccCCCCC
Confidence 999999999999998875 5432 223322 24569999999999999999999886666667899
Q ss_pred EEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCccCCCCCCCCCccccccccccc
Q 017459 181 VAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKPTEDCALDQGLQI 260 (371)
Q Consensus 181 igIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (371)
+||+|+||||||||+|+||++||+++.. +.++|+.+..+.+.++|+|+|.+.++.++.. ||+.++.
T Consensus 357 VAilPLGTGNDLsR~l~WGgg~~g~~~~-~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~--~~~~~~~----------- 422 (634)
T KOG1169|consen 357 VAILPLGTGNDLSRVLRWGGGYPGEDRN-LIKILKDIEEAPVTKLDRWKVLVEPQSGELV--QYSLKPP----------- 422 (634)
T ss_pred eEEEecCCCCchHhhcCCCCCCCcchhh-HHHHHHhhhhccceecceeeEEeeccccccc--cccccCC-----------
Confidence 9999999999999999999999998776 8899999999999999999999987766532 4444432
Q ss_pred cCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhhcccccccCCCccccchhhhhe
Q 017459 261 EGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGLKNILR 340 (371)
Q Consensus 261 ~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~~~~~~~c~~~p~~~~~~~~~~ 340 (371)
++..+....+|+||||||+||+|+++||.+|+++|++|+||+.||++|+.||+ +.||++.|+.. .
T Consensus 423 ----~~~~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~-q~~f~~~ck~~----------~ 487 (634)
T KOG1169|consen 423 ----EKGDPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGT-QETFAARCKNL----------H 487 (634)
T ss_pred ----CcCCCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecc-hhhHHHhhcCC----------c
Confidence 11112456799999999999999999999999999999999999999999998 66799988752 5
Q ss_pred eeecccCCCCceEeecCCcccceeee
Q 017459 341 MHVKKVNCSEWEQVAVPKRWSSNIWV 366 (371)
Q Consensus 341 l~~~~~~~~~~~~i~~~~~~~~~~~~ 366 (371)
++++....++|++|++|+++++||-.
T Consensus 488 ~~i~i~~~~d~~dl~~p~sleGIv~L 513 (634)
T KOG1169|consen 488 LHIKIELDGDGEDLELPKSLEGIVVL 513 (634)
T ss_pred cceEEEEcccceEccCCCCceeEEEE
Confidence 77788788999999999999999854
No 2
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-50 Score=398.06 Aligned_cols=268 Identities=31% Similarity=0.553 Sum_probs=206.0
Q ss_pred EeeccccccccchhhhhhHHhhH--HHh-hhcCC----------CCCCCCCCCceecCCCCCCCCCcEEEEEcCCCCCCC
Q 017459 29 RIDKEDLRRKLSIPEYLRVAMSN--AIR-RKEGE----------PPADTCQSDVIVDGNGVQPPEAPMVVFINSRSGGRH 95 (371)
Q Consensus 29 ~~~~~~~r~~~~~p~yl~~~~~~--~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~llviiNP~SG~~~ 95 (371)
.|.+|.+..++|+|++|+...+- +++ +|.++ .+.........++...+.+.|+|++||+||+|||++
T Consensus 301 pCslGahaavivPPTWIlr~~~pqnslkaskkkkRtsfkRKasKkg~ee~k~rpFvikPtsSplmkPLLVFVNPKSGGNq 380 (1004)
T KOG0782|consen 301 PCSLGAHAAVIVPPTWILRLANPQNSLKASKKKKRTSFKRKASKKGHEENKGRPFVIKPTSSPLMKPLLVFVNPKSGGNQ 380 (1004)
T ss_pred cccccccceeecCchHheeecCccchhhhhhhcccCchhhhhhhccchhccCCceEEccCCCCCCCceEEEecCCCCCcc
Confidence 69999999999999999875332 122 11111 111111122344566778999999999999999999
Q ss_pred hhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhhcccCCC
Q 017459 96 GPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGR 175 (371)
Q Consensus 96 g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~ 175 (371)
|.+.++.+.++|+++||||++..+|.. +-++-++ ..+.+|++|||||||+|++..|.+++ .
T Consensus 381 GsK~lq~f~WyLNPRQVFDlsq~GPK~--------aLEmyRK--------V~nLRILaCGGDGTVGWiLStLD~L~---l 441 (1004)
T KOG0782|consen 381 GSKALQTFCWYLNPRQVFDLSQLGPKF--------ALEMYRK--------VVNLRILACGGDGTVGWILSTLDNLN---L 441 (1004)
T ss_pred hHHHHHHHHHhcChhhheehhccCcHH--------HHHHHHh--------ccceEEEEecCCCceeehhhhhhhcC---C
Confidence 999999999999999999999876653 3444332 34589999999999999999999864 4
Q ss_pred CCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCccCCCCCCCCCcccccc
Q 017459 176 EPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKPTEDCALD 255 (371)
Q Consensus 176 ~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~~p~~~~~~~~~~~~ 255 (371)
.+.||+||+|+||||||||+|+||++|... .+.++|+.+++|.++++|+|.+.+ .|+.+.+ .-..|
T Consensus 442 ~p~PPvailPLGTGNDLARtlnWGGgytDE---PvSkil~~ve~gtvVqLDRW~lhv-EpNp~~~----------pEe~d 507 (1004)
T KOG0782|consen 442 PPYPPVAILPLGTGNDLARTLNWGGGYTDE---PVSKILQAVEHGTVVQLDRWRLHV-EPNPSCN----------PEEED 507 (1004)
T ss_pred CCCCCeeEeecCCcchHHHhcccCCCcCcc---hHHHHHHHHhcCcEEeeeeeeecc-cCCCCCC----------hhhhc
Confidence 688999999999999999999999999875 577888999999999999999988 3333211 11234
Q ss_pred ccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhhcccccccCCCccccch
Q 017459 256 QGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGL 335 (371)
Q Consensus 256 ~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~~~~~~~c~~~p~~~~~ 335 (371)
+|.. ..+|- .+|+||||+||||+|+.+||+.|+.+|++|++|++||+.|++.++...+. -+++.|
T Consensus 508 dG~~--~~LPL------~VfnNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl~-------rSskDL 572 (1004)
T KOG0782|consen 508 DGMQ--SALPL------TVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFLK-------RSSKDL 572 (1004)
T ss_pred ccch--hccch------hHhhccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHHh-------hhhHHh
Confidence 4432 22332 47999999999999999999999999999999999999999999988421 234455
Q ss_pred hhhheeeec
Q 017459 336 KNILRMHVK 344 (371)
Q Consensus 336 ~~~~~l~~~ 344 (371)
.+-+++..+
T Consensus 573 ~khi~vvCD 581 (1004)
T KOG0782|consen 573 CKHITVVCD 581 (1004)
T ss_pred hhheEEEec
Confidence 555555443
No 3
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=6.1e-34 Score=297.33 Aligned_cols=242 Identities=19% Similarity=0.183 Sum_probs=187.0
Q ss_pred cchhhhhhhhhcCcce-EEeeccccccccchhhhhhHHh----hHHHhhhcCCCCCCCCCCCcee--c----CCCCCCCC
Q 017459 12 ARSSMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVAM----SNAIRRKEGEPPADTCQSDVIV--D----GNGVQPPE 80 (371)
Q Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~~----~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~ 80 (371)
.-...||+.++.|.++ |||..|..|+..++.+||...- .+...+..++.|+...+|..|. + +......+
T Consensus 163 ~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~~~~ 242 (547)
T PRK12361 163 QAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKLNIH 242 (547)
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcccC
Confidence 3345678889999999 9999999999999999998542 2223444555666666666655 2 45556668
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV 160 (371)
+++++|+||+||++++.+.++++++.|.+. +++.. +.|+..+|++++++++. ..+.+.||++||||||
T Consensus 243 ~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~--~~~~v-----~~t~~~~~a~~la~~~~-----~~~~d~Viv~GGDGTl 310 (547)
T PRK12361 243 KRAWLIANPVSGGGKWQEYGEQIQRELKAY--FDLTV-----KLTTPEISAEALAKQAR-----KAGADIVIACGGDGTV 310 (547)
T ss_pred CceEEEECCCCCCCcHHHHHHHHHHHHhcC--CceEE-----EECCCCccHHHHHHHHH-----hcCCCEEEEECCCcHH
Confidence 899999999999999999999999999763 45544 45566788999987642 2456899999999999
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhh-CCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCc
Q 017459 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSF-GWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (371)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsL-G~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~ 239 (371)
|||+|+|.+ +++|+||||+||||||||+| |++... .++ +++++.+.+|+.+++|++.+
T Consensus 311 ~ev~~~l~~-------~~~~lgiiP~GTgNdfAr~L~gi~~~~-~~~----~~a~~~i~~g~~~~iD~g~v--------- 369 (547)
T PRK12361 311 TEVASELVN-------TDITLGIIPLGTANALSHALFGLGSKL-IPV----EQACDNIIQGHTQRIDTARC--------- 369 (547)
T ss_pred HHHHHHHhc-------CCCCEEEecCCchhHHHHHhcCCCCCC-ccH----HHHHHHHHhCCCeEEEEEEE---------
Confidence 999999975 56899999999999999999 996421 233 34555678899999999753
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhh
Q 017459 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQ 319 (371)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~ 319 (371)
++++|+|++|+||||+|++..++.++ .++ +++.|...+++.
T Consensus 370 -------------------------------n~~~fln~agiG~da~v~~~~~~~~k-------~~~-G~laY~~~~~~~ 410 (547)
T PRK12361 370 -------------------------------NDRLMLLLVGIGFEQKMIESADRERK-------NAL-GQLAYLDGLWRA 410 (547)
T ss_pred -------------------------------cCeEEEEEEeechhHHHHHhccHHHH-------hcc-CHHHHHHHHHHH
Confidence 24589999999999999998876653 233 899999888887
Q ss_pred cccccc
Q 017459 320 GWFLTP 325 (371)
Q Consensus 320 ~~~~~~ 325 (371)
.+...+
T Consensus 411 l~~~~~ 416 (547)
T PRK12361 411 VNENET 416 (547)
T ss_pred hhcCCC
Confidence 655444
No 4
>PRK00861 putative lipid kinase; Reviewed
Probab=99.97 E-value=9.4e-30 Score=246.91 Aligned_cols=171 Identities=20% Similarity=0.219 Sum_probs=136.6
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
++++++|+||.||++++.+.++.++..|.+. +++.. +.|+..+|+.++++++. ..+.+.|+++|||||
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~--~~~~~-----~~t~~~~~a~~~a~~~~-----~~~~d~vv~~GGDGT 69 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDLALIRAILEPE--MDLDI-----YLTTPEIGADQLAQEAI-----ERGAELIIASGGDGT 69 (300)
T ss_pred CceEEEEECCCCCCCchhhhHHHHHHHHHhc--CceEE-----EEccCCCCHHHHHHHHH-----hcCCCEEEEECChHH
Confidence 5789999999999998877888888888753 34333 45667789999987642 245689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCc
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~ 239 (371)
+|+|+|+|.+ .++|||+||+||||||||+||+ |.++.+ +++.+.+|+.+++|++++.
T Consensus 70 l~evv~~l~~-------~~~~lgviP~GTgNdfAr~lgi----~~~~~~----a~~~i~~g~~~~iDlg~vn-------- 126 (300)
T PRK00861 70 LSAVAGALIG-------TDIPLGIIPRGTANAFAAALGI----PDTIEE----ACRTILQGKTRRVDVAYCN-------- 126 (300)
T ss_pred HHHHHHHHhc-------CCCcEEEEcCCchhHHHHHcCC----CCCHHH----HHHHHHcCCcEEeeEEEEC--------
Confidence 9999999974 5689999999999999999999 555444 4555778999999997541
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhh
Q 017459 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQ 319 (371)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~ 319 (371)
+++|+|.+|+||||+|++..++..+ .++ +++.|...++++
T Consensus 127 --------------------------------~~~fin~a~~G~~a~v~~~~~~~~k-------~~~-G~~aY~~~~l~~ 166 (300)
T PRK00861 127 --------------------------------GQPMILLAGIGFEAETVEEADREAK-------NRF-GILAYILSGLQQ 166 (300)
T ss_pred --------------------------------CEEEEEEEeccHHHHHHHHhhHHHH-------hcc-cHHHHHHHHHHH
Confidence 3589999999999999998765442 234 899999999988
Q ss_pred cccccc
Q 017459 320 GWFLTP 325 (371)
Q Consensus 320 ~~~~~~ 325 (371)
.+...|
T Consensus 167 l~~~~~ 172 (300)
T PRK00861 167 LRELES 172 (300)
T ss_pred hccCCC
Confidence 765443
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=99.97 E-value=2.1e-29 Score=245.09 Aligned_cols=177 Identities=23% Similarity=0.206 Sum_probs=138.1
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
..++++++|+||.||++++.+.++.+.+.|... .+++.. +.|+..+|++++++++. ..+.+.||++|||
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~-g~~~~~-----~~t~~~~~~~~~a~~~~-----~~~~d~vvv~GGD 74 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHR-GVDVVE-----IVGTDAHDARHLVAAAL-----AKGTDALVVVGGD 74 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHc-CCeEEE-----EEeCCHHHHHHHHHHHH-----hcCCCEEEEECCc
Confidence 347899999999999999888888888888654 455544 45566889999987642 2456899999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCC
Q 017459 158 GTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSG 237 (371)
Q Consensus 158 GTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~ 237 (371)
||+|+|+|+|.. .++|||+||+||||||||+||++. .++. .+++.+.+|+++++|++++.-. +
T Consensus 75 GTi~evv~~l~~-------~~~~lgiiP~GT~NdfAr~lg~~~---~~~~----~a~~~i~~g~~~~iDlg~v~~~--~- 137 (306)
T PRK11914 75 GVISNALQVLAG-------TDIPLGIIPAGTGNDHAREFGIPT---GDPE----AAADVIVDGWTETVDLGRIQDD--D- 137 (306)
T ss_pred hHHHHHhHHhcc-------CCCcEEEEeCCCcchhHHHcCCCC---CCHH----HHHHHHHcCCceEEEEEEEecC--C-
Confidence 999999999974 568999999999999999999932 1333 3445578899999999877420 0
Q ss_pred CccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHh
Q 017459 238 EVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSC 317 (371)
Q Consensus 238 ~~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~ 317 (371)
..+++|+|++|+||||.|++..++.|. ++ +++.|...++
T Consensus 138 --------------------------------~~~~~f~n~~~~G~~a~v~~~~~~~k~--------~~-G~~aY~~~~l 176 (306)
T PRK11914 138 --------------------------------GIVKWFGTVAATGFDSLVTDRANRMRW--------PH-GRMRYNLAML 176 (306)
T ss_pred --------------------------------CCcEEEEEEEeeehHHHHHHHHHhccc--------cC-CchhhHHHHH
Confidence 013699999999999999988765431 23 8899999988
Q ss_pred hhcccc
Q 017459 318 TQGWFL 323 (371)
Q Consensus 318 ~~~~~~ 323 (371)
++++..
T Consensus 177 ~~l~~~ 182 (306)
T PRK11914 177 AELSKL 182 (306)
T ss_pred HHHHhc
Confidence 876543
No 6
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=99.96 E-value=1.7e-29 Score=245.59 Aligned_cols=178 Identities=25% Similarity=0.330 Sum_probs=146.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
++++.+|+||.||++++.+.++.+++.|..+ .+++.. +.++..+|+.++++++. ..+.|.||++|||||
T Consensus 2 ~~~~~~i~Np~sG~~~~~~~~~~~~~~l~~~-g~~~~~-----~~t~~~g~a~~~a~~a~-----~~~~D~via~GGDGT 70 (301)
T COG1597 2 MKKALLIYNPTSGKGKAKKLLREVEELLEEA-GHELSV-----RVTEEAGDAIEIAREAA-----VEGYDTVIAAGGDGT 70 (301)
T ss_pred CceEEEEEcccccccchhhHHHHHHHHHHhc-CCeEEE-----EEeecCccHHHHHHHHH-----hcCCCEEEEecCcch
Confidence 6789999999999999999999999999765 455554 34445589999998764 347899999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCc
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~ 239 (371)
||||+|+|.+. ..++|||||+||+|||||+||| |.+ .+.++++.+.+|+++.+|++++
T Consensus 71 v~evingl~~~------~~~~LgilP~GT~NdfAr~Lgi----p~~---~~~~Al~~i~~g~~~~vDlg~~--------- 128 (301)
T COG1597 71 VNEVANGLAGT------DDPPLGILPGGTANDFARALGI----PLD---DIEAALELIKSGETRKVDLGQV--------- 128 (301)
T ss_pred HHHHHHHHhcC------CCCceEEecCCchHHHHHHcCC----Cch---hHHHHHHHHHcCCeEEEeehhc---------
Confidence 99999999973 2223999999999999999999 542 3566777789999999999631
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccc-eEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhh
Q 017459 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEG-VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (371)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~-~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~ 318 (371)
+.+ ||+|.+|+||||+++++.+..|+. .+ +.+.|...++.
T Consensus 129 -------------------------------~~~~~fin~a~~G~~a~~~~~~~~~~k~-------~~-g~~~y~~~~~~ 169 (301)
T COG1597 129 -------------------------------NGRRYFINNAGIGFDAEVVAAVEEERKK-------GF-GRLAYALAGLA 169 (301)
T ss_pred -------------------------------CCcceEEEEeecchhHHHHHhhcHHHHh-------cc-chHHHHHHHHH
Confidence 123 999999999999999999988853 33 89999999999
Q ss_pred hcccccccCCC
Q 017459 319 QGWFLTPCISD 329 (371)
Q Consensus 319 ~~~~~~~c~~~ 329 (371)
......||...
T Consensus 170 ~l~~~~~~~~~ 180 (301)
T COG1597 170 VLARLKPFRIE 180 (301)
T ss_pred hccccCCCcEE
Confidence 88777776543
No 7
>PRK13055 putative lipid kinase; Reviewed
Probab=99.96 E-value=4.7e-29 Score=245.84 Aligned_cols=175 Identities=20% Similarity=0.198 Sum_probs=135.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
+++++||+||+||++++.+.+.+++..|.... +++... ..+...+|++++++++. ..+.+.|||+|||||
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g-~~~~i~----~t~~~~~~a~~~~~~~~-----~~~~d~vvv~GGDGT 71 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNVADILDILEQAG-YETSAF----QTTPEPNSAKNEAKRAA-----EAGFDLIIAAGGDGT 71 (334)
T ss_pred CceEEEEECCCCCchhHHHHHHHHHHHHHHcC-CeEEEE----EeecCCccHHHHHHHHh-----hcCCCEEEEECCCCH
Confidence 57899999999999998888999999987654 444431 12224578888887642 245689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCC-cHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCC
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPF-AWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~-~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~ 238 (371)
||+|+|+|... ...+||||||+||||||||+||+ |. ++.++ ++.+..|+++++|++.+.
T Consensus 72 l~evvngl~~~-----~~~~~LgiiP~GTgNdfAr~Lgi----~~~~~~~a----~~~l~~g~~~~vD~g~v~------- 131 (334)
T PRK13055 72 INEVVNGIAPL-----EKRPKMAIIPAGTTNDYARALKI----PRDNPVEA----AKVILKNQTIKMDIGRAN------- 131 (334)
T ss_pred HHHHHHHHhhc-----CCCCcEEEECCCchhHHHHHcCC----CCcCHHHH----HHHHHcCCcEEeeEEEEC-------
Confidence 99999999853 25689999999999999999999 55 45444 445678999999998642
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhh
Q 017459 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (371)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~ 318 (371)
++++|+|.+|+||||+|++..+..++ .++ +++.|...+++
T Consensus 132 --------------------------------~~~~F~n~ag~G~da~v~~~~~~~~k-------~~~-G~laY~~~~~~ 171 (334)
T PRK13055 132 --------------------------------EDKYFINIAAGGSLTELTYSVPSQLK-------SMF-GYLAYLAKGAE 171 (334)
T ss_pred --------------------------------CCcEEEEEehhccchHHHHhcCHHHH-------hhc-cHHHHHHHHHH
Confidence 13699999999999999988775442 244 89999998888
Q ss_pred hccccc
Q 017459 319 QGWFLT 324 (371)
Q Consensus 319 ~~~~~~ 324 (371)
.++...
T Consensus 172 ~l~~~~ 177 (334)
T PRK13055 172 LLPRVS 177 (334)
T ss_pred HHHhcC
Confidence 765443
No 8
>PRK13059 putative lipid kinase; Reviewed
Probab=99.96 E-value=6.6e-29 Score=240.76 Aligned_cols=173 Identities=21% Similarity=0.167 Sum_probs=129.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
|+++++|+||.||++++.+.++.+++.|.+. .+++....+ ...++. +.++++. ....+.|+++|||||
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~~~i~~~l~~~-g~~~~~~~~-----~~~~~~-~~~~~~~-----~~~~d~vi~~GGDGT 68 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIRIHQEK-GYLVVPYRI-----SLEYDL-KNAFKDI-----DESYKYILIAGGDGT 68 (295)
T ss_pred CcEEEEEECCcccchhHHHHHHHHHHHHHHC-CcEEEEEEc-----cCcchH-HHHHHHh-----hcCCCEEEEECCccH
Confidence 4689999999999998878888888888664 345443221 122232 3333221 245689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCc
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~ 239 (371)
||+|+|+|.+. ..++||||||+||||||||+||+ |.++.++ ++.+..|+.+++|++++.
T Consensus 69 v~evv~gl~~~-----~~~~~lgviP~GTgNdfAr~lgi----~~~~~~a----~~~i~~g~~~~vDlg~v~-------- 127 (295)
T PRK13059 69 VDNVVNAMKKL-----NIDLPIGILPVGTANDFAKFLGM----PTDIGEA----CEQILKSKPKKVDLGKIN-------- 127 (295)
T ss_pred HHHHHHHHHhc-----CCCCcEEEECCCCHhHHHHHhCC----CCCHHHH----HHHHHhCCcEEeeEEEEC--------
Confidence 99999999853 25689999999999999999998 5555444 445678999999998642
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhh
Q 017459 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQ 319 (371)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~ 319 (371)
+++|+|++|+||||+|++..+...+ .++ +++.|...++++
T Consensus 128 --------------------------------~~~f~n~~~~G~~a~v~~~~~~~~k-------~~~-G~~aY~~~~~~~ 167 (295)
T PRK13059 128 --------------------------------DKYFINVASTGLFTDVSQKTDVNLK-------NTI-GKLAYYLKGLEE 167 (295)
T ss_pred --------------------------------CEEEEEEEeeeechhhhhhccHHHh-------hCc-chHHHHHHHHHH
Confidence 3599999999999999998764321 233 899999999988
Q ss_pred cccccc
Q 017459 320 GWFLTP 325 (371)
Q Consensus 320 ~~~~~~ 325 (371)
.+...|
T Consensus 168 l~~~~~ 173 (295)
T PRK13059 168 LPNFRK 173 (295)
T ss_pred HhcCCC
Confidence 765444
No 9
>PRK13057 putative lipid kinase; Reviewed
Probab=99.96 E-value=8.4e-29 Score=238.90 Aligned_cols=164 Identities=21% Similarity=0.265 Sum_probs=129.6
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHH
Q 017459 84 VVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWV 163 (371)
Q Consensus 84 lviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~~V 163 (371)
++|+||.||+++ +.+++++..|... .+++.. ..|+..+++++++++. ..+.++|+++|||||||+|
T Consensus 1 ~~I~Np~sg~~~--~~~~~i~~~l~~~-g~~~~~-----~~t~~~~~a~~~~~~~------~~~~d~iiv~GGDGTv~~v 66 (287)
T PRK13057 1 LLLVNRHARSGR--AALAAARAALEAA-GLELVE-----PPAEDPDDLSEVIEAY------ADGVDLVIVGGGDGTLNAA 66 (287)
T ss_pred CEEECCCCCCcc--hhHHHHHHHHHHc-CCeEEE-----EecCCHHHHHHHHHHH------HcCCCEEEEECchHHHHHH
Confidence 479999999875 4678888888664 345544 4556778999988752 2456899999999999999
Q ss_pred HHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCccCCC
Q 017459 164 LGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPP 243 (371)
Q Consensus 164 ln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~~p 243 (371)
+|+|.+ .++|||+||+||||||||+||+ |.++.+ +++.+..++.+++|++++.
T Consensus 67 ~~~l~~-------~~~~lgiiP~GT~Ndfar~Lg~----~~~~~~----a~~~i~~~~~~~vD~g~~~------------ 119 (287)
T PRK13057 67 APALVE-------TGLPLGILPLGTANDLARTLGI----PLDLEA----AARVIATGQVRRIDLGWVN------------ 119 (287)
T ss_pred HHHHhc-------CCCcEEEECCCCccHHHHHcCC----CCCHHH----HHHHHHcCCeEEeeEEEEC------------
Confidence 999974 5689999999999999999999 444444 4556778999999998641
Q ss_pred CCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhhcccc
Q 017459 244 HSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFL 323 (371)
Q Consensus 244 ~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~~~~~ 323 (371)
+++|+|++|+||||.|++.++..++ .++ +++.|...+++.++..
T Consensus 120 ----------------------------~~~f~n~~g~G~da~v~~~~~~~~k-------~~~-G~~aY~~~~~~~l~~~ 163 (287)
T PRK13057 120 ----------------------------GHYFFNVASLGLSAELARRLTKELK-------RRW-GTLGYAIAALRVLRRS 163 (287)
T ss_pred ----------------------------CEEEEEEEecCccHHHHHHhhHHhh-------ccC-ChhHHHHHHHHHHhhC
Confidence 3599999999999999998876442 234 8999999998886544
Q ss_pred c
Q 017459 324 T 324 (371)
Q Consensus 324 ~ 324 (371)
.
T Consensus 164 ~ 164 (287)
T PRK13057 164 R 164 (287)
T ss_pred C
Confidence 3
No 10
>PRK13337 putative lipid kinase; Reviewed
Probab=99.96 E-value=1.4e-28 Score=239.33 Aligned_cols=171 Identities=21% Similarity=0.201 Sum_probs=133.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
|+++++|+||+||++++.+.++.+.+.|.+.+ +++.. +.|++.+|++++++++. ..+.+.||++|||||
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~-~~~~~-----~~t~~~~~a~~~a~~~~-----~~~~d~vvv~GGDGT 69 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLPDVLQKLEQAG-YETSA-----HATTGPGDATLAAERAV-----ERKFDLVIAAGGDGT 69 (304)
T ss_pred CceEEEEECCcccchhHHHHHHHHHHHHHHcC-CEEEE-----EEecCCCCHHHHHHHHH-----hcCCCEEEEEcCCCH
Confidence 47899999999999887777888887776643 45443 45667899999987642 245689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCc
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~ 239 (371)
||+|+|+|... ...+||||||.||||||||+||+ |.++.+ +++.+..|..+++|++++.
T Consensus 70 l~~vv~gl~~~-----~~~~~lgiiP~GT~NdfAr~lgi----~~~~~~----a~~~i~~g~~~~vDlg~vn-------- 128 (304)
T PRK13337 70 LNEVVNGIAEK-----ENRPKLGIIPVGTTNDFARALHV----PRDIEK----AADVIIEGHTVPVDIGKAN-------- 128 (304)
T ss_pred HHHHHHHHhhC-----CCCCcEEEECCcCHhHHHHHcCC----CCCHHH----HHHHHHcCCeEEEEEEEEC--------
Confidence 99999999853 24689999999999999999999 555444 4455778999999997542
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhh
Q 017459 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQ 319 (371)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~ 319 (371)
+++|+|.+|+|+||+|++..+...+ .++ +++.|...+++.
T Consensus 129 --------------------------------~~~fln~~g~G~~a~v~~~~~~~~k-------~~~-G~~aY~~~~~~~ 168 (304)
T PRK13337 129 --------------------------------NRYFINIAGGGRLTELTYEVPSKLK-------TML-GQLAYYLKGIEM 168 (304)
T ss_pred --------------------------------CEEEEeeehhhHHHHHHHhcCHHHh-------cCc-ccHHHHHHHHHH
Confidence 3599999999999999988764321 234 889999888876
Q ss_pred ccc
Q 017459 320 GWF 322 (371)
Q Consensus 320 ~~~ 322 (371)
.+.
T Consensus 169 l~~ 171 (304)
T PRK13337 169 LPS 171 (304)
T ss_pred Hhh
Confidence 543
No 11
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=99.95 E-value=6.8e-28 Score=233.35 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=127.1
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHH
Q 017459 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (371)
Q Consensus 82 ~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~ 161 (371)
++++|+||+||.. +.+..+.+.|.+. .++++. +.|+..+|++++++++. ..+.+.|+++|||||+|
T Consensus 1 ~~~~I~N~~~~~~---~~~~~~~~~l~~~-g~~~~v-----~~t~~~~~a~~~a~~~~-----~~~~d~vv~~GGDGTi~ 66 (293)
T TIGR03702 1 KALLILNGKQADN---EDVREAVGDLRDE-GIQLHV-----RVTWEKGDAQRYVAEAL-----ALGVSTVIAGGGDGTLR 66 (293)
T ss_pred CEEEEEeCCccch---hHHHHHHHHHHHC-CCeEEE-----EEecCCCCHHHHHHHHH-----HcCCCEEEEEcCChHHH
Confidence 4789999998743 2444556667554 345443 45667799999997642 24568999999999999
Q ss_pred HHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCccC
Q 017459 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVD 241 (371)
Q Consensus 162 ~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~ 241 (371)
+|+|+|.+... ...+|||+||+||||||||+||+ |.++.+ +++.+..|+++++|++.++
T Consensus 67 ev~ngl~~~~~---~~~~~lgiiP~GTgNdfAr~l~i----p~~~~~----a~~~i~~g~~~~iDlg~v~---------- 125 (293)
T TIGR03702 67 EVATALAQIRD---DAAPALGLLPLGTANDFATAAGI----PLEPAK----ALKLALNGAAQPIDLARVN---------- 125 (293)
T ss_pred HHHHHHHhhCC---CCCCcEEEEcCCchhHHHHhcCC----CCCHHH----HHHHHHhCCceeeeEEEEC----------
Confidence 99999975321 23578999999999999999999 555444 4455678999999997542
Q ss_pred CCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhhcc
Q 017459 242 PPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGW 321 (371)
Q Consensus 242 ~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~~~ 321 (371)
+ +++|+|.+|+||||+|++..++..+ .++ +++.|...+++..+
T Consensus 126 --------------------~---------~~~f~n~~~~G~da~v~~~~~~~~k-------~~~-G~~aY~~~~l~~l~ 168 (293)
T TIGR03702 126 --------------------G---------KHYFLNMATGGFGTRVTTETSEKLK-------KAL-GGAAYLITGLTRFS 168 (293)
T ss_pred --------------------C---------ccEEEEEeecccchHhhhhhhHHHH-------hcc-chHHHHHHHHHHHh
Confidence 0 2589999999999999999876432 233 89999999988764
Q ss_pred c
Q 017459 322 F 322 (371)
Q Consensus 322 ~ 322 (371)
.
T Consensus 169 ~ 169 (293)
T TIGR03702 169 E 169 (293)
T ss_pred h
Confidence 3
No 12
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=99.95 E-value=1.1e-27 Score=246.22 Aligned_cols=181 Identities=19% Similarity=0.217 Sum_probs=136.6
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHH-HHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017459 78 PPEAPMVVFINSRSGGRHGPELKE-RLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (371)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~l~~-~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GG 156 (371)
..+++++||+||.||++++.+++. .++.+|...+ +++.. +.|++++|+++++++++ ..+++.||++||
T Consensus 109 ~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~g-i~~~v-----~~T~~~ghA~~la~~~~-----~~~~D~VV~vGG 177 (481)
T PLN02958 109 GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDAD-IQLTI-----QETKYQLHAKEVVRTMD-----LSKYDGIVCVSG 177 (481)
T ss_pred cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcC-CeEEE-----EeccCccHHHHHHHHhh-----hcCCCEEEEEcC
Confidence 467899999999999999888764 6888887654 44443 56778899999998653 356799999999
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhh----CCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEE
Q 017459 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSF----GWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (371)
Q Consensus 157 DGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsL----G~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (371)
|||+|||+|+|....++....++||||||+||||||||+| |+ |.++.++ +..|..|+.+++|++.+.-
T Consensus 178 DGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gi----p~~~~~A----~~~I~~g~~~~vDlg~v~~ 249 (481)
T PLN02958 178 DGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGE----PCSATNA----VLAIIRGHKCSLDVATILQ 249 (481)
T ss_pred CCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCC----CcCHHHH----HHHHHcCCceEEeEEEEEc
Confidence 9999999999986432222346899999999999999999 76 5555444 4457889999999987631
Q ss_pred ecCCCCccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhh
Q 017459 233 QMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIY 312 (371)
Q Consensus 233 ~~~~~~~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y 312 (371)
+. ...+|+|.+|+||||+|.....+.| +.+++.|
T Consensus 250 ----~~--------------------------------~~~f~vn~~g~GfdAdV~~~se~kr----------~lG~lrY 283 (481)
T PLN02958 250 ----GE--------------------------------TKFFSVLMLAWGLVADIDIESEKYR----------WMGSARL 283 (481)
T ss_pred ----CC--------------------------------ceEEEEEeeeeehhhhhhccccccc----------ccchHHH
Confidence 00 0123479999999999965533222 2389999
Q ss_pred HHHHhhhcccc
Q 017459 313 SGYSCTQGWFL 323 (371)
Q Consensus 313 ~~~~~~~~~~~ 323 (371)
...+++..+..
T Consensus 284 ~~~~l~~l~~~ 294 (481)
T PLN02958 284 DFYGLQRILCL 294 (481)
T ss_pred HHHHHHHHHhc
Confidence 99999876544
No 13
>PRK13054 lipid kinase; Reviewed
Probab=99.95 E-value=1.4e-27 Score=231.78 Aligned_cols=173 Identities=21% Similarity=0.259 Sum_probs=130.4
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 79 ~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
+|+++++|+||++++. +.+..+...|.+.+ +++.. ..|...+|+.++++++. ..+.+.||++||||
T Consensus 2 ~~~~~~~i~N~~~~~~---~~~~~~~~~l~~~g-~~~~v-----~~t~~~~~a~~~a~~~~-----~~~~d~vvv~GGDG 67 (300)
T PRK13054 2 TFPKSLLILNGKSAGN---EELREAVGLLREEG-HTLHV-----RVTWEKGDAARYVEEAL-----ALGVATVIAGGGDG 67 (300)
T ss_pred CCceEEEEECCCccch---HHHHHHHHHHHHcC-CEEEE-----EEecCCCcHHHHHHHHH-----HcCCCEEEEECCcc
Confidence 5789999999998632 44555556665543 44443 45567789999987642 24568999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCC
Q 017459 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGE 238 (371)
Q Consensus 159 TV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~ 238 (371)
|||+|+|+|.+... ..++|||+||+||||||||+||+ |.++.+ +++.+..|+++++|+++++
T Consensus 68 Tl~evv~~l~~~~~---~~~~~lgiiP~GTgNdfar~lgi----~~~~~~----a~~~i~~g~~~~iDlg~v~------- 129 (300)
T PRK13054 68 TINEVATALAQLEG---DARPALGILPLGTANDFATAAGI----PLEPDK----ALKLAIEGRAQPIDLARVN------- 129 (300)
T ss_pred HHHHHHHHHHhhcc---CCCCcEEEEeCCcHhHHHHhcCC----CCCHHH----HHHHHHhCCceEEEEEEEc-------
Confidence 99999999985321 24689999999999999999999 555544 4555778999999998642
Q ss_pred ccCCCCCCCCCccccccccccccCCCCcccccccc-eEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHh
Q 017459 239 VVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEG-VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSC 317 (371)
Q Consensus 239 ~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~-~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~ 317 (371)
++ +|+|.+|+||||+|+++.++..+ .++ +++.|...++
T Consensus 130 ---------------------------------~~~~f~n~~~~G~~a~v~~~~~~~~k-------~~~-G~~~Y~~~~l 168 (300)
T PRK13054 130 ---------------------------------DRTYFINMATGGFGTRVTTETPEKLK-------AAL-GGVAYLIHGL 168 (300)
T ss_pred ---------------------------------CceEEEEEeecchhHHHHHhhHHHHH-------hcc-chHHHHHHHH
Confidence 23 99999999999999998865321 233 8999999998
Q ss_pred hhccccc
Q 017459 318 TQGWFLT 324 (371)
Q Consensus 318 ~~~~~~~ 324 (371)
...+...
T Consensus 169 ~~l~~~~ 175 (300)
T PRK13054 169 MRMDTLK 175 (300)
T ss_pred HHHhhCC
Confidence 8865443
No 14
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=99.95 E-value=7.6e-27 Score=225.47 Aligned_cols=173 Identities=20% Similarity=0.270 Sum_probs=131.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
|+++++|+||.||++.+.+.++++++.|...+. ++.. +.|+..+++.+++++.. ..+.+.||++|||||
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~-~~~~-----~~t~~~~~~~~~~~~~~-----~~~~d~ivv~GGDGT 69 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPLREVIMLLREEGM-EIHV-----RVTWEKGDAARYVEEAR-----KFGVDTVIAGGGDGT 69 (293)
T ss_pred CceEEEEECCCccchhhHHHHHHHHHHHHHCCC-EEEE-----EEecCcccHHHHHHHHH-----hcCCCEEEEECCCCh
Confidence 578999999999998888888889888876543 3332 23344556666654321 235689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCc
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEV 239 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~ 239 (371)
+++|+|+|... ...+|||+||+||+|||||+||+ |.++.+ +++.+.+++.+++|++++.
T Consensus 70 l~~v~~~l~~~-----~~~~~lgiiP~Gt~N~~a~~l~i----~~~~~~----~~~~l~~~~~~~~Dlg~v~-------- 128 (293)
T TIGR00147 70 INEVVNALIQL-----DDIPALGILPLGTANDFARSLGI----PEDLDK----AAKLVIAGDARAIDMGQVN-------- 128 (293)
T ss_pred HHHHHHHHhcC-----CCCCcEEEEcCcCHHHHHHHcCC----CCCHHH----HHHHHHcCCceEEEEEEEC--------
Confidence 99999999753 23479999999999999999999 444444 4455778999999997542
Q ss_pred cCCCCCCCCCccccccccccccCCCCcccccccce-EEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhh
Q 017459 240 VDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGV-FYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCT 318 (371)
Q Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~-F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~ 318 (371)
+++ |+|++|+|+||++++.++... +.++ +++.|...++.
T Consensus 129 --------------------------------~~~~fln~~g~G~~a~v~~~~~~~~-------k~~~-g~~~Y~~~~l~ 168 (293)
T TIGR00147 129 --------------------------------KQYCFINMAGGGFGTEITTETPEKL-------KAAL-GSLSYILSGLM 168 (293)
T ss_pred --------------------------------CeEEEEEEEeechhhHhHhhCCHHH-------Hhcc-chHHHHHHHHH
Confidence 358 999999999999999886432 2344 89999999888
Q ss_pred hccccc
Q 017459 319 QGWFLT 324 (371)
Q Consensus 319 ~~~~~~ 324 (371)
..+...
T Consensus 169 ~l~~~~ 174 (293)
T TIGR00147 169 RMDTLQ 174 (293)
T ss_pred HHhhCC
Confidence 765443
No 15
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=99.93 E-value=7.8e-28 Score=248.25 Aligned_cols=133 Identities=35% Similarity=0.679 Sum_probs=111.9
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
+-..|++||+|.+||..+|.++.+++..+|++.||||+...+|+-.++. .. .-+..+|+|||||
T Consensus 192 ~~~spllv~insksgd~qg~~~lrkfkq~lnp~qVfdll~~gp~~gL~~----f~------------~~d~friLvcggd 255 (1099)
T KOG1170|consen 192 PCGSPLLVFINSKSGDSQGQRFLRKFKQILNPIQVFDLIAGGPDFGLTF----FS------------HFESFRILVCGGD 255 (1099)
T ss_pred CCCCceeEeecccCCCchhHHHHHhhhhhcCHHHHHHHHccCcchhhhh----hh------------cccceEEEEecCC
Confidence 6678999999999999999999999999999999999988777543221 11 1345799999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEE
Q 017459 158 GTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (371)
Q Consensus 158 GTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~ 231 (371)
|+|+||+..+..+ +..+++-++++|+||||||||.||||..|+.+- .+.++++....+.++++|+|.+-
T Consensus 256 Gsv~wvls~~ds~---~lh~kcql~vlplgtgndlarvlgwg~a~~ddt--~~p~il~~~eRastkmldrwsvm 324 (1099)
T KOG1170|consen 256 GSVGWVLSAIDRL---NLHSKCQLAVLPLGTGNDLARVLGWGHAFYDDT--LLPQILRTMERASTKMLDRWSVM 324 (1099)
T ss_pred CCCcchHHHHHhc---cchhhcccccccCCChHHHHHHhcccccCchhh--ccHHHHHHHHhhhhhhhhcchhh
Confidence 9999999998875 346889999999999999999999998777543 34578888888999999999864
No 16
>PLN02204 diacylglycerol kinase
Probab=99.93 E-value=9.1e-25 Score=225.86 Aligned_cols=196 Identities=13% Similarity=0.040 Sum_probs=143.2
Q ss_pred CCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEc
Q 017459 76 VQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (371)
Q Consensus 76 ~~~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~G 155 (371)
.....++++|||||.||++++.+.++++..+|..+. +++.. +.|+..+|+.++++++.+ .....++.||++|
T Consensus 155 ~~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~-i~~~v-----~~T~~aghA~d~~~~~~~--~~l~~~D~VVaVG 226 (601)
T PLN02204 155 EVGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAK-VKTKV-----IVTERAGHAFDVMASISN--KELKSYDGVIAVG 226 (601)
T ss_pred ccCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcC-CeEEE-----EEecCcchHHHHHHHHhh--hhccCCCEEEEEc
Confidence 446678999999999999999999999999997654 34333 567788999999865421 1135679999999
Q ss_pred CchHHHHHHHHHhhcccC--------------------------------------------------------------
Q 017459 156 GDGTVGWVLGSVGELNKQ-------------------------------------------------------------- 173 (371)
Q Consensus 156 GDGTV~~Vln~L~~~~~~-------------------------------------------------------------- 173 (371)
||||+|||+|+|...+..
T Consensus 227 GDGt~nEVlNGL~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (601)
T PLN02204 227 GDGFFNEILNGYLLSRLKVPYPPSPSDSVHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQ 306 (601)
T ss_pred CccHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999732100
Q ss_pred -----CCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCccCCCCCCCC
Q 017459 174 -----GREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKP 248 (371)
Q Consensus 174 -----~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~~p~~~~~ 248 (371)
.....++|||||.|||||||++++. +.++..++ ..|..|+.+.+|+++|.-... ...+
T Consensus 307 ~~~~~~~~~~~~lGIIPaGSgN~~a~~~~g----~~dp~taa----~~Ii~G~~~~lDig~V~~~~~-~~~~-------- 369 (601)
T PLN02204 307 DSDFPFPNERFRFGIIPAGSTDAIVMCTTG----ERDPVTSA----LHIILGRRVCLDIAQVVRWKT-TSTS-------- 369 (601)
T ss_pred cccccccCCCceEEEECCccHHHHHHHccC----CCCHHHHH----HHHHhCCCeEeeEEEEecccc-cccc--------
Confidence 0124688999999999999999875 45554443 447789999999998742100 0000
Q ss_pred CccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhhccccc
Q 017459 249 TEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLT 324 (371)
Q Consensus 249 ~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~~~~~~ 324 (371)
+ .....+||.|.+|+||||+|+.+.++.| +.+++.|...+++..+...
T Consensus 370 --------------~----~~~~~ryf~s~ag~Gf~gdVi~esek~R----------~mG~~rY~~~g~k~~~~~r 417 (601)
T PLN02204 370 --------------E----IEPYVRYAASFAGYGFYGDVISESEKYR----------WMGPKRYDYAGTKVFLKHR 417 (601)
T ss_pred --------------c----ccccceEEEEEeecchHHHHHHHhhhhc----------ccchHHHHHHHHHHHHhCC
Confidence 0 0112479999999999999998854444 3489999999999865443
No 17
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.89 E-value=1.2e-22 Score=173.93 Aligned_cols=126 Identities=28% Similarity=0.398 Sum_probs=85.7
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCC-cEEEEEcCchHH
Q 017459 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGDGTV 160 (371)
Q Consensus 82 ~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~-~~Ivv~GGDGTV 160 (371)
+++||+||+||++++. ++++.+.|.... .++.. +.++..++++.+++.. ..... +.|+++|||||+
T Consensus 1 k~~vi~Np~sG~~~~~--~~~v~~~l~~~~-~~~~~-----~~t~~~~~~~~~~~~~-----~~~~~~~~ivv~GGDGTl 67 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--WKKVEPALRAAG-IDYEV-----IETESAGHAEALARIL-----ALDDYPDVIVVVGGDGTL 67 (130)
T ss_dssp SEEEEEETTSTTSHHH--HHHHHHHHHHTT-CEEEE-----EEESSTTHHHHHHHHH-----HHTTS-SEEEEEESHHHH
T ss_pred CEEEEECCCCCCCchh--HHHHHHHHHHcC-CceEE-----EEEeccchHHHHHHHH-----hhccCccEEEEEcCccHH
Confidence 5899999999999887 477888776653 33333 3344567777776521 13444 899999999999
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeE
Q 017459 161 GWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHA 230 (371)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i 230 (371)
++++|+|.+... ...+|||+||+||||||||+||++. ++.. .....+..+...++|+.++
T Consensus 68 ~~vv~~l~~~~~---~~~~~l~iiP~GT~N~~ar~lg~~~----~~~~---~a~~~~~~~~~~~~d~~~v 127 (130)
T PF00781_consen 68 NEVVNGLMGSDR---EDKPPLGIIPAGTGNDFARSLGIPS----DPEA---NAALLIILGRVRKIDVGKV 127 (130)
T ss_dssp HHHHHHHCTSTS---SS--EEEEEE-SSS-HHHHHTT--S----SHHH----HHHHHHHSEEEEEEEEEE
T ss_pred HHHHHHHhhcCC---CccceEEEecCCChhHHHHHcCCCC----CcHH---HHHHHHHhCCCcEeEEEEe
Confidence 999999987532 2267999999999999999999954 3333 1222344566778998764
No 18
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.87 E-value=1.9e-22 Score=205.40 Aligned_cols=226 Identities=19% Similarity=0.200 Sum_probs=160.1
Q ss_pred hhhhcCcce--EEeeccccccccchhhh-hhHHhhHHHhhhcCCCCCCCCCCCcee--c--CCCCCCCCCcEEEEEcCCC
Q 017459 19 SIRGCGLSG--MRIDKEDLRRKLSIPEY-LRVAMSNAIRRKEGEPPADTCQSDVIV--D--GNGVQPPEAPMVVFINSRS 91 (371)
Q Consensus 19 ~~~~~~~~~--~~~~~~~~r~~~~~p~y-l~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~llviiNP~S 91 (371)
...+|+... ++....+.+++.+.|.+ ....+.....+....... . ..... + ........++++||+||++
T Consensus 114 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~r~~~lLV~iNP~g 190 (579)
T KOG1116|consen 114 PIYKLGPKRKLLRVRSTRPFRVDCTPVEPFTLKVASFCRKQAAETSD-R--SFTFEGLGDKSVDSLKRPRRLLVFINPFG 190 (579)
T ss_pred ehhhccccccceeeeecccccceeeeeehhhcccceeehhhhhcccc-c--cceecccccccccccCCCccEEEEECCCC
Confidence 344466665 67888888888888876 222222111111111110 0 00111 1 2455666788999999999
Q ss_pred CCCChhhHHH-HHHHHhhhcCe-eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhh
Q 017459 92 GGRHGPELKE-RLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGE 169 (371)
Q Consensus 92 G~~~g~~l~~-~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~~Vln~L~~ 169 (371)
|.|++.+++. +++.+|.++.+ |++ .+|.+++||.++++..+ ..++|.||++||||+++||+|||..
T Consensus 191 GkGka~~~F~~~v~Pll~~A~i~~ev-------v~T~~~~HArei~rt~d-----l~kyDgIv~vsGDGl~hEVlNGLl~ 258 (579)
T KOG1116|consen 191 GKGKAKKLFKNHVEPLLSEAGISFEV-------VLTTRPNHAREIVRTLD-----LGKYDGIVCVSGDGLLHEVLNGLLE 258 (579)
T ss_pred CCccHHHHHHhhhhhhhhhcCceEEE-------EEecCccHHHHHHHhhh-----ccccceEEEecCCcCHHHhhhcccc
Confidence 9999988875 55667776544 544 67889999999999864 6789999999999999999999998
Q ss_pred cccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEecCCCCccCCCCCCCCC
Q 017459 170 LNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQMPSGEVVDPPHSLKPT 249 (371)
Q Consensus 170 ~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~~~~~~~~~~p~~~~~~ 249 (371)
..++......|||+||+||||+||.+++|..++ + -++. +...++.|....+|+..+...
T Consensus 259 R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~--~--~~~~-a~l~iirg~~t~~dv~~v~~~---------------- 317 (579)
T KOG1116|consen 259 RPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGP--D--LPLL-ATLLIIRGRLTPMDVSVVEYA---------------- 317 (579)
T ss_pred ccchhhHhcCceeEeecCCccHHHHHhhcccCc--c--cchH-HHHHHHccCCCchheeehhhc----------------
Confidence 777666778999999999999999999998763 2 0222 233467899999999765431
Q ss_pred ccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCc
Q 017459 250 EDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKP 299 (371)
Q Consensus 250 ~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P 299 (371)
.....++++....||-|+|-.+.+++|..-|
T Consensus 318 -------------------~~~~~fSfLs~~wGlIADiDI~SEk~R~mG~ 348 (579)
T KOG1116|consen 318 -------------------GKDRHFSFLSAAWGLIADVDIESEKYRWMGP 348 (579)
T ss_pred -------------------cCcceEEEEeeeeeeEEecccchHHHHhhcc
Confidence 0112578899999999999888888885433
No 19
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.87 E-value=8.7e-22 Score=167.76 Aligned_cols=101 Identities=47% Similarity=0.844 Sum_probs=75.3
Q ss_pred EEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHH
Q 017459 84 VVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWV 163 (371)
Q Consensus 84 lviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~~V 163 (371)
+||+||+||++++.+++..++..+.+.+++.... ...+++.+++++ ...++.|+++|||||+|+|
T Consensus 1 lvi~NP~sG~~~~~~~~~~~~~~l~~~~v~~t~~--------~~~~~~~~~~~~-------~~~~d~vvv~GGDGTi~~v 65 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLRKFRLLLNPAQVFDLTK--------KGPAAALVIFRD-------LPKFDRVLVCGGDGTVGWV 65 (124)
T ss_pred CEEEcCCCCCCccHHHHHHHHHHcCCceEEEEec--------CChHHHHHHHhh-------cCcCCEEEEEccccHHHHH
Confidence 5899999999999889998888887654433211 123344444432 2346799999999999999
Q ss_pred HHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCC
Q 017459 164 LGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGS 201 (371)
Q Consensus 164 ln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~ 201 (371)
+|+|.+... ..+.+|||+||+||||||||+|||+.+
T Consensus 66 vn~l~~~~~--~~~~~plgiiP~GTgNdfar~lgi~~~ 101 (124)
T smart00046 66 LNALDKREL--PLPEPPVAVLPLGTGNDLARSLGWGGG 101 (124)
T ss_pred HHHHHhccc--ccCCCcEEEeCCCChhHHHHHcCCCCC
Confidence 999986421 112289999999999999999999665
No 20
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=99.58 E-value=8.5e-16 Score=136.65 Aligned_cols=80 Identities=33% Similarity=0.579 Sum_probs=68.0
Q ss_pred eEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhhcccccccCCCccccchhhhheeeecccCCCCceE
Q 017459 274 VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWFLTPCISDPNLRGLKNILRMHVKKVNCSEWEQ 353 (371)
Q Consensus 274 ~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~~~~~~~c~~~p~~~~~~~~~~l~~~~~~~~~~~~ 353 (371)
+|+||||||+||+|+++||+.|+++|++|++|+.||++|+.+|+++.| ..+|.. +...+++. .+|++
T Consensus 1 v~~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~-~~~~~~------~~~~i~l~------~dg~~ 67 (161)
T PF00609_consen 1 VMNNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALF-QRSCKN------LPKKIELE------VDGKE 67 (161)
T ss_pred CeEecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHH-hchhcC------chhhcccc------cCCee
Confidence 489999999999999999999999999999999999999999999986 555543 33444444 56888
Q ss_pred eecCCcccceeee
Q 017459 354 VAVPKRWSSNIWV 366 (371)
Q Consensus 354 i~~~~~~~~~~~~ 366 (371)
+++|..+++||-.
T Consensus 68 ~~lp~~~~~iv~l 80 (161)
T PF00609_consen 68 VDLPSSLESIVFL 80 (161)
T ss_pred EeeecceeEEEEE
Confidence 9999999998854
No 21
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.46 E-value=1.8e-13 Score=134.16 Aligned_cols=185 Identities=17% Similarity=0.097 Sum_probs=134.2
Q ss_pred CCCCCCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEE
Q 017459 74 NGVQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVV 153 (371)
Q Consensus 74 ~~~~~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv 153 (371)
+......+.++|||||.+|+|+|.++++.+.++ |-+....+..++|+..+||.+..-+... ++...+|-||+
T Consensus 152 ~k~~~RPknllvFinPfgGkG~g~ki~e~V~~~------F~la~v~tkvivTErAnhA~d~~~ei~~--~~~~~yDGiv~ 223 (516)
T KOG1115|consen 152 IKEVERPKNLLVFINPFGGKGNGSKIWETVSKI------FILAKVNTKVIVTERANHAFDVMAEIQN--KELHTYDGIVA 223 (516)
T ss_pred HHHhcCCccEEEEEcCCCCCCcccchhhhhhhh------EEeeecceeEEEEccccchhhhhhhCCH--hhhhhcccEEE
Confidence 344556778999999999999999999997654 3444444455788899999987655432 33567899999
Q ss_pred EcCchHHHHHHHHHhhccc------C------CCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCC
Q 017459 154 AGGDGTVGWVLGSVGELNK------Q------GREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGP 221 (371)
Q Consensus 154 ~GGDGTV~~Vln~L~~~~~------~------~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~ 221 (371)
+||||-.||+|+++...-. + ...+.+-+||||.|+.|...-+-.= ..| ++..+|+ |.-|+
T Consensus 224 VGGDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~g----t~D---~~TSAlH-I~lG~ 295 (516)
T KOG1115|consen 224 VGGDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTTG----TRD---PVTSALH-IILGR 295 (516)
T ss_pred ecCchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEecc----CCc---cccceee-eEecc
Confidence 9999999999999843211 0 1235677999999999998887642 223 2333443 55689
Q ss_pred eeEeeeeeEEEecCCCCccCCCCCCCCCccccccccccccCCCCcccccccceEEEEeecchhHHHHhhhccccccCccc
Q 017459 222 ICRLDSWHAVIQMPSGEVVDPPHSLKPTEDCALDQGLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYL 301 (371)
Q Consensus 222 ~~~iD~w~i~v~~~~~~~~~~p~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~F~Ny~siG~DA~Va~~f~~~R~~~P~~ 301 (371)
...+|+..+.-. ...-||-.|.+|.||-.+|..+.+++|-.
T Consensus 296 ~l~vDVctVht~-----------------------------------~kLiRysaSa~gYGFyGDvl~dSEKYRWm---- 336 (516)
T KOG1115|consen 296 KLFVDVCTVHTI-----------------------------------EKLIRYSASAAGYGFYGDVLSDSEKYRWM---- 336 (516)
T ss_pred ceeeeeeeeeec-----------------------------------chheeeehhhhcccccchhhhhhhhhhcc----
Confidence 999999765410 02346888999999999999999988843
Q ss_pred cccCCccchhhHHHHhhh
Q 017459 302 AQGPISNKLIYSGYSCTQ 319 (371)
Q Consensus 302 ~~~rl~nkl~Y~~~~~~~ 319 (371)
+...|-+.+++.
T Consensus 337 ------Gp~RYDfsglKt 348 (516)
T KOG1115|consen 337 ------GPKRYDFSGLKT 348 (516)
T ss_pred ------CchhhhhHHHHH
Confidence 556677777775
No 22
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.21 E-value=9.3e-11 Score=115.20 Aligned_cols=137 Identities=20% Similarity=0.123 Sum_probs=93.3
Q ss_pred CCCCCCCCcEEEEEcCCCCCCChhhHHH-HHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEE
Q 017459 74 NGVQPPEAPMVVFINSRSGGRHGPELKE-RLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIV 152 (371)
Q Consensus 74 ~~~~~~~~~llviiNP~SG~~~g~~l~~-~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Iv 152 (371)
.++....++++|++||.+..+.....+. .-..+|.- .++++++ +.|.+.|+++.+++..+ ...|.|+
T Consensus 54 vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHL-aG~~V~I-----vktd~~gqak~l~e~~~------t~~Dii~ 121 (535)
T KOG4435|consen 54 VPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHL-AGVQVDI-----VKTDNQGQAKALAEAVD------TQEDIIY 121 (535)
T ss_pred CCcccccceEEEEechhhccchhhhhhhcccchheee-ccceEEE-----EecCcHHHHHHHHHHhc------cCCCeEE
Confidence 5566778999999999988755443333 23344443 3567766 45667899999997654 2349999
Q ss_pred EEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCC-CCcHHHHHHHHHHHHHcCCe---eEeee
Q 017459 153 VAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSF-PFAWKSAVKRTLQRASAGPI---CRLDS 227 (371)
Q Consensus 153 v~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~-p~~~~~al~~~l~~i~~g~~---~~iD~ 227 (371)
|+|||||+++|+.|+.+.+ ....|++++|+|--|--..+.-.. -| ..|....+-+++..+++++. ..+|+
T Consensus 122 VaGGDGT~~eVVTGi~Rrr----~~~~pv~~~P~G~~~l~~~s~l~~-vfe~~d~V~h~~~a~~avikde~ksv~~fdv 195 (535)
T KOG4435|consen 122 VAGGDGTIGEVVTGIFRRR----KAQLPVGFYPGGYDNLWLKSMLPS-VFENSDDVRHACEAAMAVIKDEKKSVYAFDV 195 (535)
T ss_pred EecCCCcHHHhhHHHHhcc----cccCceeeccCccchHhhhhhchh-hhccchHHHHHHHHHHHHhcccccceEEEEe
Confidence 9999999999999999753 467899999998876544333211 11 12344455556666777766 66666
No 23
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.44 E-value=1.7e-06 Score=83.54 Aligned_cols=123 Identities=13% Similarity=0.058 Sum_probs=76.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHh-ccchhhhccCCCcEEEEEcCchH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE-LGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~-~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
+++.+++|+.. ....++++++.+.|...+ +++.... ..+...+++...+. .. ...+.+.||++|||||
T Consensus 1 m~v~iv~~~~k--~~~~~~~~~I~~~L~~~g-~~v~v~~---~~~~~~~~~~~~~~~~~-----~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARRDK--EEALKLAYRVYDFLKVSG-YEVVVDS---ETYEHLPEFSEEDVLPL-----EEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEec---chhhhcCcccccccccc-----cccCCCEEEEEeCcHH
Confidence 35788888754 456778888888886643 3333211 00001111111110 00 0125689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEE
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (371)
+.++++ +.. ..+||..||+||. +|...+.. +.+.++++++.+|....-.+-.+.+
T Consensus 70 lL~a~~-~~~-------~~~pi~gIn~G~l-GFl~~~~~---------~~~~~~l~~i~~g~~~~~~r~~l~~ 124 (277)
T PRK03708 70 ILRIEH-KTK-------KDIPILGINMGTL-GFLTEVEP---------EETFFALSRLLEGDYFIDERIKLRV 124 (277)
T ss_pred HHHHHH-hcC-------CCCeEEEEeCCCC-CccccCCH---------HHHHHHHHHHHcCCceEEEeEEEEE
Confidence 999999 653 5789999999998 77776652 2466778888888765434433433
No 24
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.40 E-value=2.4e-06 Score=83.68 Aligned_cols=125 Identities=12% Similarity=0.043 Sum_probs=77.0
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhH-HHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLAC-LEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 79 ~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~-a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
.++++++|+|| |.....+..+.+.+.|.+. .+++...... ...+ .....+ ......+.|+++|||
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~~~i~~~L~~~-g~~v~v~~~~-----~~~~~~~~~~~------~~~~~~d~vi~~GGD 67 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAAERCAKQLEAR-GCKVLMGPSG-----PKDNPYPVFLA------SASELIDLAIVLGGD 67 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHHHHHHHHHHHC-CCEEEEecCc-----hhhccccchhh------ccccCcCEEEEECCc
Confidence 46789999999 4445566778888777553 4554332110 0000 011111 112346899999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeC-CCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEe
Q 017459 158 GTVGWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (371)
Q Consensus 158 GTV~~Vln~L~~~~~~~~~~~~pigIIPl-GTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~ 233 (371)
||+..+++.+.. .++|+..|.+ |+-.=|+. ++.... . +++++.+.+|+..--.+..+.++
T Consensus 68 GT~l~~~~~~~~-------~~~pv~gin~~G~lGFL~~-------~~~~~~-~-~~~l~~i~~g~~~i~~r~~L~~~ 128 (305)
T PRK02645 68 GTVLAAARHLAP-------HDIPILSVNVGGHLGFLTH-------PRDLLQ-D-ESVWDRLQEDRYAIERRMMLQAR 128 (305)
T ss_pred HHHHHHHHHhcc-------CCCCEEEEecCCcceEecC-------chhhcc-h-HHHHHHHHcCCceEEEeeEEEEE
Confidence 999999999863 5789999998 76433332 111111 1 56778888998776666666554
No 25
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=98.12 E-value=4.8e-07 Score=80.24 Aligned_cols=49 Identities=37% Similarity=0.619 Sum_probs=44.4
Q ss_pred eEEEEeecchhHHHHhhhccccccCccccccCCccchhhHHHHhhhccc
Q 017459 274 VFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGYSCTQGWF 322 (371)
Q Consensus 274 ~F~Ny~siG~DA~Va~~f~~~R~~~P~~~~~rl~nkl~Y~~~~~~~~~~ 322 (371)
+|+||+|+||||+|++.+++.|+.+|.++++++.|++.|...+++.+|+
T Consensus 1 ~~~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~ 49 (160)
T smart00045 1 VMNNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFF 49 (160)
T ss_pred CccccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhh
Confidence 4899999999999999999999888988888888999999999988754
No 26
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.85 E-value=0.00017 Score=70.29 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=74.5
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 79 ~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
.++++.+|.|+.. ....++.+.+.+.|.+++ +++...... ....+ ..... .........+.|.|++.||||
T Consensus 4 ~~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~g-~~v~~~~~~---~~~~~-~~~~~--~~~~~~~~~~~d~vi~lGGDG 74 (292)
T PRK03378 4 HFKCIGIVGHPRH--PTALTTHEMLYHWLTSKG-YEVIVEQQI---AHELQ-LKNVK--TGTLAEIGQQADLAIVVGGDG 74 (292)
T ss_pred cCCEEEEEEeCCC--HHHHHHHHHHHHHHHHCC-CEEEEecch---hhhcC-ccccc--ccchhhcCCCCCEEEEECCcH
Confidence 3678999999865 345667788888776544 333221100 00000 00000 000001113468999999999
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeCCCcc-chhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEE
Q 017459 159 TVGWVLGSVGELNKQGREPVPPVAIIPLGTGN-DLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (371)
Q Consensus 159 TV~~Vln~L~~~~~~~~~~~~pigIIPlGTGN-DlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (371)
|+..++..+.. . .+.|+|.++|| +|...+.. +.++.+|+++.+|....-.+..+.+
T Consensus 75 T~L~aa~~~~~-------~--~~Pilgin~G~lGFl~~~~~---------~~~~~~l~~i~~g~~~i~~r~~L~~ 131 (292)
T PRK03378 75 NMLGAARVLAR-------Y--DIKVIGINRGNLGFLTDLDP---------DNALQQLSDVLEGHYISEKRFLLEA 131 (292)
T ss_pred HHHHHHHHhcC-------C--CCeEEEEECCCCCcccccCH---------HHHHHHHHHHHcCCceEEEEEEEEE
Confidence 99999987753 2 25578888888 66655542 2466677888888766555555544
No 27
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=97.84 E-value=0.0001 Score=72.29 Aligned_cols=58 Identities=36% Similarity=0.274 Sum_probs=42.3
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcC
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAG 220 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g 220 (371)
.-+.|+.+|||||...|++++. .+.|+--||.||-|-++-..-- |. +..+++..+.++
T Consensus 100 gVdlIvfaGGDGTarDVa~av~--------~~vPvLGipaGvk~~SgvfA~~----P~----~aa~l~~~~lkg 157 (355)
T COG3199 100 GVDLIVFAGGDGTARDVAEAVG--------ADVPVLGIPAGVKNYSGVFALS----PE----DAARLLGAFLKG 157 (355)
T ss_pred CceEEEEeCCCccHHHHHhhcc--------CCCceEeeccccceeccccccC----hH----HHHHHHHHHhcc
Confidence 4689999999999999999983 5688999999998765421111 32 344566666666
No 28
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.62 E-value=0.00084 Score=65.57 Aligned_cols=128 Identities=13% Similarity=0.065 Sum_probs=75.7
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeeccc-ceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPH-EFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 79 ~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~-~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
.++++.+|+|+... ...++.+.+.+.|.++ .+++...... +.+ .++....... .......+.|++.|||
T Consensus 3 ~~~~v~iv~~~~k~--~a~e~~~~i~~~L~~~-giev~v~~~~~~~~---~~~~~~~~~~----~~~~~~~d~vi~~GGD 72 (295)
T PRK01231 3 SFRNIGLIGRLGSS--SVVETLRRLKDFLLDR-GLEVILDEETAEVL---PGHGLQTVSR----KLLGEVCDLVIVVGGD 72 (295)
T ss_pred CCCEEEEEecCCCH--HHHHHHHHHHHHHHHC-CCEEEEecchhhhc---Ccccccccch----hhcccCCCEEEEEeCc
Confidence 36679999998774 4567888888877654 3443332110 000 0000000000 0012346899999999
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEe
Q 017459 158 GTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (371)
Q Consensus 158 GTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~ 233 (371)
||+..+++.+.. ..+||--|.+|+ +|+-..++ .+.++++++.+.+|....-.+..+.+.
T Consensus 73 Gt~l~~~~~~~~-------~~~Pvlgin~G~-------lGFl~~~~---~~~~~~~l~~~~~g~~~i~~r~~L~~~ 131 (295)
T PRK01231 73 GSLLGAARALAR-------HNVPVLGINRGR-------LGFLTDIR---PDELEFKLAEVLDGHYQEEERFLLEAE 131 (295)
T ss_pred HHHHHHHHHhcC-------CCCCEEEEeCCc-------ccccccCC---HHHHHHHHHHHHcCCceEEEEEEEEEE
Confidence 999999988753 556766677764 45433222 235677888888888766666666553
No 29
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.33 E-value=0.0043 Score=60.49 Aligned_cols=128 Identities=17% Similarity=0.113 Sum_probs=73.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
++.+.+|.|+.+ ....++.+.+.+.|...+ +++..... .. ...+ ...+-. .. ........+.||++|||||
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~~~i~~~L~~~g-~~v~v~~~-~~--~~~~-~~~~~~-~~-~~~~~~~~d~vi~~GGDGt 75 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPLESLAAFLAKRG-FEVVFEAD-TA--RNIG-LTGYPA-LT-PEEIGARADLAVVLGGDGT 75 (291)
T ss_pred CCEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEecc-hh--hhcC-cccccc-cC-hhHhccCCCEEEEECCcHH
Confidence 567889988865 345667788887776543 34322110 00 0000 000000 00 0001134689999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEe
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~ 233 (371)
+..+++.+.. .++|+-=|.+|+ ||+=..++ .+.+.++|+++.+|....-.++.+.+.
T Consensus 76 ~l~~~~~~~~-------~~~pilGIn~G~-------lGFL~~~~---~~~~~~~l~~~~~g~~~i~~r~~L~~~ 132 (291)
T PRK02155 76 MLGIGRQLAP-------YGVPLIGINHGR-------LGFITDIP---LDDMQETLPPMLAGNYEEEERMLLEAR 132 (291)
T ss_pred HHHHHHHhcC-------CCCCEEEEcCCC-------ccccccCC---HHHHHHHHHHHHcCCceEEEeEEEEEE
Confidence 9999988753 456655567666 34422222 235777888888998766666666543
No 30
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.31 E-value=0.0042 Score=60.45 Aligned_cols=126 Identities=14% Similarity=0.055 Sum_probs=74.4
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017459 77 QPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (371)
Q Consensus 77 ~~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GG 156 (371)
+..++++.+|+||.. ...++.+++...|..++ +++..... .+..+............+.|.||+.||
T Consensus 7 ~~~~~~i~ii~~~~~---~~~~~~~~i~~~l~~~g-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~Dlvi~iGG 73 (287)
T PRK14077 7 HKNIKKIGLVTRPNV---SLDKEILKLQKILSIYK-VEILLEKE---------SAEILDLPGYGLDELFKISDFLISLGG 73 (287)
T ss_pred cccCCEEEEEeCCcH---HHHHHHHHHHHHHHHCC-CEEEEecc---------hhhhhcccccchhhcccCCCEEEEECC
Confidence 455888999999863 56778888888886654 33322110 001110000000001134689999999
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEE
Q 017459 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (371)
Q Consensus 157 DGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (371)
|||+-.++..+.. .++||--|-+|+ ||+=..++ .+.++++++++.+|+...-.+-.+.+
T Consensus 74 DGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFLt~~~---~~~~~~~l~~i~~g~y~ie~r~~L~~ 132 (287)
T PRK14077 74 DGTLISLCRKAAE-------YDKFVLGIHAGH-------LGFLTDIT---VDEAEKFFQAFFQGEFEIEKPYMLSV 132 (287)
T ss_pred CHHHHHHHHHhcC-------CCCcEEEEeCCC-------cccCCcCC---HHHHHHHHHHHHcCCCeEEEEEEEEE
Confidence 9999888876653 456655567776 66633322 23567788888888755444444444
No 31
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.24 E-value=0.0017 Score=62.95 Aligned_cols=70 Identities=26% Similarity=0.277 Sum_probs=47.3
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEe
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~i 225 (371)
.+.|.||++|||||+-.++..+.. ..+||--|++||-|=|+ .+. +. .+..+++.+.+|+...-
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~-------~~~Pilgin~G~lgfl~-~~~-----~~----~~~~~l~~~~~g~~~~~ 137 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGD-------YDIPILGINTGTLGFLT-EFE-----PE----DIEEALEKILAGEYSIE 137 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTT-------ST-EEEEEESSSSTSSS-SEE-----GC----GHHHHHHHHHHTHCEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHhcc-------CCCcEEeecCCCccccc-cCC-----HH----HHHHHHHHHhcCCeEEE
Confidence 567999999999999999987753 57899999999844333 222 23 34555666667666655
Q ss_pred eeeeEEE
Q 017459 226 DSWHAVI 232 (371)
Q Consensus 226 D~w~i~v 232 (371)
.+..+.+
T Consensus 138 ~r~~l~~ 144 (285)
T PF01513_consen 138 ERMRLEV 144 (285)
T ss_dssp EEEEEEE
T ss_pred EeeeEEE
Confidence 5555544
No 32
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.19 E-value=0.0082 Score=58.98 Aligned_cols=126 Identities=13% Similarity=0.166 Sum_probs=74.2
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHh---cc---------chhhhcc
Q 017459 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE---LG---------DFCAKDT 145 (371)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~---~~---------~~~a~~~ 145 (371)
.+++++.+|.|+.. ....++.+.+...|..++ +++...... +..+.. .. +......
T Consensus 3 ~~~~~I~iv~~~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (306)
T PRK03372 3 TASRRVLLVAHTGR--DEATEAARRVAKQLGDAG-IGVRVLDAE---------AVDLGATHPAPDDFRAMEVVDADPDAA 70 (306)
T ss_pred CCccEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEeech---------hhhhcccccccccccccccccchhhcc
Confidence 45677999999754 345677888888776543 333221110 000000 00 0000011
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEe
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~i 225 (371)
.+.|.||+.|||||+-.++..+.. ..+||--|.+|+ ||+=..++ .+.++.+|+++.+|...--
T Consensus 71 ~~~D~vi~lGGDGT~L~aar~~~~-------~~~PilGIN~G~-------lGFL~~~~---~~~~~~~l~~i~~g~y~i~ 133 (306)
T PRK03372 71 DGCELVLVLGGDGTILRAAELARA-------ADVPVLGVNLGH-------VGFLAEAE---AEDLDEAVERVVDRDYRVE 133 (306)
T ss_pred cCCCEEEEEcCCHHHHHHHHHhcc-------CCCcEEEEecCC-------CceeccCC---HHHHHHHHHHHHcCCceEE
Confidence 245899999999999999877653 457777788887 55533222 2356778888889987655
Q ss_pred eeeeEEE
Q 017459 226 DSWHAVI 232 (371)
Q Consensus 226 D~w~i~v 232 (371)
.+-.+.+
T Consensus 134 ~R~~L~~ 140 (306)
T PRK03372 134 ERMTLDV 140 (306)
T ss_pred EeeeEEE
Confidence 5544443
No 33
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.04 E-value=0.01 Score=58.08 Aligned_cols=129 Identities=14% Similarity=0.136 Sum_probs=74.5
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeeccc----ceee-cchhHHHHHHhccchhhhccCCCcEEE
Q 017459 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPH----EFVQ-YGLACLEKLAELGDFCAKDTRQKMRIV 152 (371)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~----~~~t-~~~~~a~~la~~~~~~a~~~~~~~~Iv 152 (371)
.+++++.+|.|+.. ....++.+.+...|.+++ +++...... .... ...++. .. . ........|.||
T Consensus 3 ~~~~~i~ii~~~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~~~~D~vi 73 (296)
T PRK04539 3 SPFHNIGIVTRPNT--PDIQDTAHTLITFLKQHG-FTVYLDEVGIKEGCIYTQDTVGCH--IV-N---KTELGQYCDLVA 73 (296)
T ss_pred CCCCEEEEEecCCC--HHHHHHHHHHHHHHHHCC-CEEEEecccccccchhcccccccc--cc-c---hhhcCcCCCEEE
Confidence 45788999999865 345667888888776544 233221100 0000 000000 00 0 000112468999
Q ss_pred EEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEE
Q 017459 153 VAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (371)
Q Consensus 153 v~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (371)
+.|||||+-.++..+.. ..+||-=|-+|+ ||+=..++ .+.+..+++++.+|+...-.+..+.+
T Consensus 74 ~lGGDGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFL~~~~---~~~~~~~l~~i~~g~~~~~~r~~l~~ 136 (296)
T PRK04539 74 VLGGDGTFLSVAREIAP-------RAVPIIGINQGH-------LGFLTQIP---REYMTDKLLPVLEGKYLAEERILIEA 136 (296)
T ss_pred EECCcHHHHHHHHHhcc-------cCCCEEEEecCC-------CeEeeccC---HHHHHHHHHHHHcCCceEEEeeeEEE
Confidence 99999999999877653 456665577776 66644333 23566778888888766555555554
No 34
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.97 E-value=0.014 Score=57.26 Aligned_cols=130 Identities=13% Similarity=0.074 Sum_probs=71.2
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecc-cceeecchhH-----HHHHHhccchhhhccCCCcEEEE
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKP-HEFVQYGLAC-----LEKLAELGDFCAKDTRQKMRIVV 153 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p-~~~~t~~~~~-----a~~la~~~~~~a~~~~~~~~Ivv 153 (371)
|+++.+|+|+.. ....++.+.+.+.|.+++ +++..... ...+. .... ...+.. .. ......+.|.+|+
T Consensus 1 m~~igiv~n~~~--~~~~~~~~~l~~~L~~~g-~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~Dlvi~ 74 (305)
T PRK02649 1 MPKAGIIYNDGK--PLAVRTAEELQDKLEAAG-WEVVRASSSGGILG-YANPDQPVCHTGIDQ-LV-PPGFDSSMKFAIV 74 (305)
T ss_pred CCEEEEEEcCCC--HHHHHHHHHHHHHHHHCC-CEEEEecchhhhcC-ccccccccccccccc-cC-hhhcccCcCEEEE
Confidence 467899999744 345677888888776544 33322110 00000 0000 000000 00 0001124589999
Q ss_pred EcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEE
Q 017459 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (371)
Q Consensus 154 ~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (371)
.|||||+-.++..+.. .++||--|.+|+ ||+=..+. .+.+.++|+++.+|...--.+-.+.+
T Consensus 75 iGGDGTlL~aar~~~~-------~~iPilGIN~G~-------lGFLt~~~---~~~~~~~l~~l~~g~y~ie~r~~L~~ 136 (305)
T PRK02649 75 LGGDGTVLSAARQLAP-------CGIPLLTINTGH-------LGFLTEAY---LNQLDEAIDQVLAGQYTIEERTMLTV 136 (305)
T ss_pred EeCcHHHHHHHHHhcC-------CCCcEEEEeCCC-------CcccccCC---HHHHHHHHHHHHcCCcEEEEeeeEEE
Confidence 9999999999877653 456655566665 66533222 23567788888888865444444444
No 35
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.88 E-value=0.016 Score=55.79 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=67.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
|.++.+|.|+.. ...++.+.+...|.+.+ ++.... ..+.|.|++.|||||
T Consensus 2 ~~~i~iv~~~~~---~a~~~~~~l~~~l~~~g-~~~~~~--------------------------~~~~D~vi~lGGDGT 51 (264)
T PRK03501 2 RRNLFFFYKRDK---ELVEKVKPLKKIAEEYG-FTVVDH--------------------------PKNANIIVSIGGDGT 51 (264)
T ss_pred CcEEEEEECCCH---HHHHHHHHHHHHHHHCC-CEEEcC--------------------------CCCccEEEEECCcHH
Confidence 456788888776 45677888888786643 232110 123579999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeC-CCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEE
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPl-GTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (371)
+-.++..+.. ...+|+--|.+ | .||+=..++ .+.++++++++.+|+...-.+..+.+
T Consensus 52 ~L~a~~~~~~------~~~~pilgIn~~G-------~lGFL~~~~---~~~~~~~l~~i~~g~~~~~~r~~l~~ 109 (264)
T PRK03501 52 FLQAVRKTGF------REDCLYAGISTKD-------QLGFYCDFH---IDDLDKMIQAITKEEIEVRKYPTIEV 109 (264)
T ss_pred HHHHHHHhcc------cCCCeEEeEecCC-------CCeEcccCC---HHHHHHHHHHHHcCCcEEEEeeeEEE
Confidence 9888876542 12456433555 5 456533322 23577788888888865545554444
No 36
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.66 E-value=0.032 Score=54.48 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=71.1
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHh---------ccchhhhccCCCcEEE
Q 017459 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAE---------LGDFCAKDTRQKMRIV 152 (371)
Q Consensus 82 ~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~---------~~~~~a~~~~~~~~Iv 152 (371)
++.+|+|+.. ....++.+++.+.|..++ +++..... .+..+.. ..+.......+.|.||
T Consensus 2 ~igii~~~~~--~~~~~~~~~i~~~l~~~g-~~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi 69 (292)
T PRK01911 2 KIAIFGQTYQ--ESASPYIQELFDELEERG-AEVLIEEK---------FLDFLKQDLKFHPSYDTFSDNEELDGSADMVI 69 (292)
T ss_pred EEEEEeCCCC--HHHHHHHHHHHHHHHHCC-CEEEEecc---------hhhhhccccccccccccccchhhcccCCCEEE
Confidence 5788888754 345667788888776544 33322110 0000000 0000001112468999
Q ss_pred EEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEE
Q 017459 153 VAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVI 232 (371)
Q Consensus 153 v~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v 232 (371)
+.|||||+-.++..+.. .++||--|-+|+ ||+=..++ .+.++++|+.+.+|....-.+-.+.+
T Consensus 70 ~lGGDGT~L~aa~~~~~-------~~~PilGIN~G~-------lGFLt~~~---~~~~~~~l~~i~~g~~~i~~r~~L~~ 132 (292)
T PRK01911 70 SIGGDGTFLRTATYVGN-------SNIPILGINTGR-------LGFLATVS---KEEIEETIDELLNGDYTIEERSLLQL 132 (292)
T ss_pred EECCcHHHHHHHHHhcC-------CCCCEEEEecCC-------CCcccccC---HHHHHHHHHHHHcCCceEEEEeeEEE
Confidence 99999999988877653 456665577776 66633322 23567888889999876555555554
Q ss_pred e
Q 017459 233 Q 233 (371)
Q Consensus 233 ~ 233 (371)
.
T Consensus 133 ~ 133 (292)
T PRK01911 133 E 133 (292)
T ss_pred E
Confidence 3
No 37
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=96.58 E-value=0.042 Score=57.15 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=70.2
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecc-ccee-ec--chhHHHHHHhccchhhhccCCCcEEEE
Q 017459 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKP-HEFV-QY--GLACLEKLAELGDFCAKDTRQKMRIVV 153 (371)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p-~~~~-t~--~~~~a~~la~~~~~~a~~~~~~~~Ivv 153 (371)
.+++.++||.||.. ....++...+...|.....+++..... ...+ .. ..+.. ..-...........+.|.||+
T Consensus 192 ~~p~~VgIV~n~~k--~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~DlVIs 268 (508)
T PLN02935 192 SDPQTVLIITKPNS--TSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFV-QTWEDEKEILLLHTKVDLVIT 268 (508)
T ss_pred CCCCEEEEEecCCC--HHHHHHHHHHHHHHHhcCCCEEEEechhhhhhcccccccccc-ccccccchhhhcccCCCEEEE
Confidence 34778999999865 344567777777775322233322100 0000 00 00000 000000000001134689999
Q ss_pred EcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEE
Q 017459 154 AGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (371)
Q Consensus 154 ~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~ 231 (371)
.|||||+-.++..+.. ..+||--|.+|+ ||+=..++ .+.+..+|+.+.+|....-.+-.+.
T Consensus 269 iGGDGTlL~Aar~~~~-------~~iPILGIN~G~-------LGFLt~i~---~~e~~~~Le~il~G~y~Ie~R~~L~ 329 (508)
T PLN02935 269 LGGDGTVLWAASMFKG-------PVPPVVPFSMGS-------LGFMTPFH---SEQYRDCLDAILKGPISITLRHRLQ 329 (508)
T ss_pred ECCcHHHHHHHHHhcc-------CCCcEEEEeCCC-------cceecccC---HHHHHHHHHHHHcCCceEEEEeEEE
Confidence 9999999999877653 456655566665 55433222 2357778888988876544443443
No 38
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.00 E-value=0.1 Score=50.32 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=63.1
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHH
Q 017459 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (371)
Q Consensus 82 ~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~ 161 (371)
++.+|.|+ ..+..++.+++.+.|...+ +++. .++.|.|++.|||||+=
T Consensus 2 ~i~Ii~~~---~~~~~~~~~~l~~~l~~~g-~~~~----------------------------~~~~Dlvi~iGGDGT~L 49 (265)
T PRK04885 2 KVAIISNG---DPKSKRVASKLKKYLKDFG-FILD----------------------------EKNPDIVISVGGDGTLL 49 (265)
T ss_pred EEEEEeCC---CHHHHHHHHHHHHHHHHcC-CccC----------------------------CcCCCEEEEECCcHHHH
Confidence 36777773 2345677888888776532 2210 12458999999999999
Q ss_pred HHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEE
Q 017459 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (371)
Q Consensus 162 ~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~ 231 (371)
.++..+... ..++|+--|.+|+ ||+=..+. + +.++++++++.+|+...-.+-.+.
T Consensus 50 ~a~~~~~~~-----~~~iPilGIN~G~-------lGFL~~~~--~-~~~~~~l~~i~~g~y~i~~r~~L~ 104 (265)
T PRK04885 50 SAFHRYENQ-----LDKVRFVGVHTGH-------LGFYTDWR--P-FEVDKLVIALAKDPGQVVSYPLLE 104 (265)
T ss_pred HHHHHhccc-----CCCCeEEEEeCCC-------ceecccCC--H-HHHHHHHHHHHcCCceEEEEeeEE
Confidence 988776531 1356655567765 44433222 1 246778888888876544443333
No 39
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.89 E-value=0.2 Score=47.98 Aligned_cols=67 Identities=25% Similarity=0.343 Sum_probs=45.7
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEee
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLD 226 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD 226 (371)
+.|.|++.|||||+-.++..+ ++||--|.+|+ +|+=..+. .+.+.++++++.+|......
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~----------~~Pilgin~G~-------lGfl~~~~---~~~~~~~l~~~~~g~~~~~~ 100 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKV----------GTPLVGFKAGR-------LGFLSSYT---LEEIDRFLEDLKNWNFREEK 100 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHc----------CCCEEEEeCCC-------CccccccC---HHHHHHHHHHHHcCCcEEEE
Confidence 458999999999998776543 34544455555 66533222 23577888889999877666
Q ss_pred eeeEEEe
Q 017459 227 SWHAVIQ 233 (371)
Q Consensus 227 ~w~i~v~ 233 (371)
+..+.+.
T Consensus 101 r~~l~~~ 107 (256)
T PRK14075 101 RWFLKIE 107 (256)
T ss_pred eeEEEEE
Confidence 7666664
No 40
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.59 E-value=0.2 Score=53.35 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=69.9
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccch---hhhccCCCcEEEEEcC
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDF---CAKDTRQKMRIVVAGG 156 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~---~a~~~~~~~~Ivv~GG 156 (371)
.+++.+|.|+.. ....++..++...|...+ +++..... .+..+.....+ ......+.+.||+.||
T Consensus 290 ~~~i~iv~~~~~--~~~~~~~~~i~~~l~~~~-~~v~~~~~---------~~~~~~~~~~~~~~~~~~~~~~dlvi~lGG 357 (569)
T PRK14076 290 PTKFGIVSRIDN--EEAINLALKIIKYLDSKG-IPYELESF---------LYNKLKNRLNEECNLIDDIEEISHIISIGG 357 (569)
T ss_pred CcEEEEEcCCCC--HHHHHHHHHHHHHHHHCC-CEEEEech---------hhhhhcccccccccccccccCCCEEEEECC
Confidence 345888888753 345667788887776543 23322100 01111100000 0001224589999999
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEE
Q 017459 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAV 231 (371)
Q Consensus 157 DGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~ 231 (371)
|||+=.++..+.. ..+||--|.+|+ ||+=..+. .+.+.+.|+.+.+|...--.+-.+.
T Consensus 358 DGT~L~aa~~~~~-------~~~PilGin~G~-------lGFL~~~~---~~~~~~~l~~~~~g~~~i~~r~~L~ 415 (569)
T PRK14076 358 DGTVLRASKLVNG-------EEIPIICINMGT-------VGFLTEFS---KEEIFKAIDSIISGEYEIEKRTKLS 415 (569)
T ss_pred cHHHHHHHHHhcC-------CCCCEEEEcCCC-------CCcCcccC---HHHHHHHHHHHHcCCceEEEeEEEE
Confidence 9999999877653 456766688887 55533222 2356778888889986544443333
No 41
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.58 E-value=0.18 Score=48.45 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=39.8
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHH-HHHHHHcCCeeEe
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKR-TLQRASAGPICRL 225 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~-~l~~i~~g~~~~i 225 (371)
+.|.|++.|||||+=.++..+.. .++|+--|.+|+ ||+=..++ + +.+.+ +++.+.+......
T Consensus 33 ~~D~vi~iGGDGT~L~a~~~~~~-------~~iPilGIN~G~-------lGFL~~~~--~-~~~~~~~~~~l~~~~~~~r 95 (259)
T PRK00561 33 GADYLFVLGGDGFFVSTAANYNC-------AGCKVVGINTGH-------LGFYTSFN--E-TDLDQNFANKLDQLKFTQI 95 (259)
T ss_pred CCCEEEEECCcHHHHHHHHHhcC-------CCCcEEEEecCC-------CccccccC--H-HHHHHHHHHHHhhCCeEEE
Confidence 45899999999999988876643 556766677775 66533322 2 23444 5555554444433
Q ss_pred ee
Q 017459 226 DS 227 (371)
Q Consensus 226 D~ 227 (371)
.+
T Consensus 96 ~~ 97 (259)
T PRK00561 96 DL 97 (259)
T ss_pred EE
Confidence 33
No 42
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.34 E-value=0.29 Score=47.35 Aligned_cols=117 Identities=15% Similarity=0.208 Sum_probs=63.4
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHH
Q 017459 82 PMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVG 161 (371)
Q Consensus 82 ~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~ 161 (371)
++.+++|+.. ....++..++...| .. .++..... ..+..+.... ......+.|.|++.|||||+=
T Consensus 2 ~i~iv~~~~~--~~~~~~~~~i~~~l-~~-g~~~~~~~---------~~~~~~~~~~--~~~~~~~~D~vi~lGGDGT~L 66 (271)
T PRK01185 2 KVAFVIRKDC--KRCIKIAKSIIELL-PP-DWEIIYEM---------EAAKALGMDG--LDIEEINADVIITIGGDGTIL 66 (271)
T ss_pred EEEEEecCCC--HHHHHHHHHHHHHH-hc-CCEEEEec---------hhhhhcCccc--CcccccCCCEEEEEcCcHHHH
Confidence 4788888754 34556777787766 33 33332210 0011110000 000011468999999999987
Q ss_pred HHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEeeeeeEEEe
Q 017459 162 WVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRLDSWHAVIQ 233 (371)
Q Consensus 162 ~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~iD~w~i~v~ 233 (371)
.++..+ . +||--|-+|+ ||+=..++ .+.+.++|+++.+|...--.+..+.+.
T Consensus 67 ~a~~~~---------~-~PilGIN~G~-------lGFL~~~~---~~~~~~~l~~i~~g~~~i~~r~~L~~~ 118 (271)
T PRK01185 67 RTLQRA---------K-GPILGINMGG-------LGFLTEIE---IDEVGSAIKKLIRGEYFIDERMKLKVY 118 (271)
T ss_pred HHHHHc---------C-CCEEEEECCC-------CccCcccC---HHHHHHHHHHHHcCCcEEEEeeEEEEE
Confidence 665432 1 2444457775 45533222 235677888888887665555555553
No 43
>PLN02727 NAD kinase
Probab=95.11 E-value=0.21 Score=55.42 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=67.1
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHH--hcc--------chhhhccCC
Q 017459 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLA--ELG--------DFCAKDTRQ 147 (371)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la--~~~--------~~~a~~~~~ 147 (371)
.+++++++|.++.. ........+...|..+..+++.+.. . .+..+. ... .........
T Consensus 676 ~p~rtVgIV~K~~~---ea~~~~~eL~~~L~~~~gi~V~VE~-~--------~a~~l~~~~~~~~~~~~~~~~~~el~~~ 743 (986)
T PLN02727 676 STPKTVLLLKKLGQ---ELMEEAKEVASFLYHQEKMNVLVEP-D--------VHDIFARIPGFGFVQTFYSQDTSDLHER 743 (986)
T ss_pred CCCCEEEEEcCCcH---HHHHHHHHHHHHHHhCCCeEEEEec-c--------hHHHhhccccccccceecccchhhcccC
Confidence 56888999999876 3445666667777654233433211 0 011110 000 000001124
Q ss_pred CcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCe
Q 017459 148 KMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 222 (371)
Q Consensus 148 ~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~ 222 (371)
.|.||+.|||||+=.++..+.. ..+||--|.+|+ ||+=..+. + +.+++.|+.+.+|..
T Consensus 744 ~DLVIvLGGDGTlLrAar~~~~-------~~iPILGINlGr-------LGFLTdi~--~-ee~~~~L~~Il~G~y 801 (986)
T PLN02727 744 VDFVACLGGDGVILHASNLFRG-------AVPPVVSFNLGS-------LGFLTSHY--F-EDFRQDLRQVIHGNN 801 (986)
T ss_pred CCEEEEECCcHHHHHHHHHhcC-------CCCCEEEEeCCC-------ccccccCC--H-HHHHHHHHHHHcCCc
Confidence 6899999999999999877653 456776678884 66643322 2 346677777887764
No 44
>PLN02929 NADH kinase
Probab=94.38 E-value=0.24 Score=48.57 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=49.7
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCc---------cch--hhhhCCCCCCCCcHHHHHHHHH
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTG---------NDL--SRSFGWGGSFPFAWKSAVKRTL 214 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTG---------NDl--ArsLG~g~~~p~~~~~al~~~l 214 (371)
.+.|.||+.|||||+-.++..+ + ..+||-=|-.|+. |.| .|++|+=..+. .+.++++|
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~-~-------~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~---~~~~~~~L 131 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFL-D-------DSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT---AEDFEQVL 131 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHc-C-------CCCcEEEEECCCcccccccccccccccccCccccccCC---HHHHHHHH
Confidence 4568999999999999888766 3 3455544666742 223 45777744322 24677888
Q ss_pred HHHHcCCeeEeeeeeEEE
Q 017459 215 QRASAGPICRLDSWHAVI 232 (371)
Q Consensus 215 ~~i~~g~~~~iD~w~i~v 232 (371)
+++.+|....-.+-.+.+
T Consensus 132 ~~il~g~~~~~~r~~L~~ 149 (301)
T PLN02929 132 DDVLFGRLKPTELSRIST 149 (301)
T ss_pred HHHHcCCceEEEeeeEEE
Confidence 999999765544444444
No 45
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=94.31 E-value=0.66 Score=44.96 Aligned_cols=72 Identities=24% Similarity=0.273 Sum_probs=52.6
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCeeEe
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPICRL 225 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~~i 225 (371)
+..+.|++.|||||+-.++..+.+ ..+|+--|-+|+ ||+=..++ .+.++++++.+.+++....
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~-------~~~pilgin~G~-------lGFLt~~~---~~~~~~~~~~~~~~~~~~~ 116 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLAR-------LDIPVLGINLGH-------LGFLTDFE---PDELEKALDALLEGEYRIE 116 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhcc-------CCCCEEEEeCCC-------cccccccC---HHHHHHHHHHHhcCceEEE
Confidence 456899999999999999987764 446766666664 66644433 3467888888888877767
Q ss_pred eeeeEEEec
Q 017459 226 DSWHAVIQM 234 (371)
Q Consensus 226 D~w~i~v~~ 234 (371)
.+..+.+..
T Consensus 117 ~r~~l~~~v 125 (281)
T COG0061 117 ERLLLEVSV 125 (281)
T ss_pred EeEEEEEEE
Confidence 777776543
No 46
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=93.86 E-value=0.35 Score=46.82 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=42.5
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc-CCeeEe
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA-GPICRL 225 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~-g~~~~i 225 (371)
+.|.|++.|||||+-.++..+.. .++||--|.+|+ ||+=..+. +. .+.+.++.+.+ |+..--
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~-------~~~PilgIn~G~-------lGFL~~~~--~~-~~~~~l~~~~~~g~~~i~ 104 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAK-------YDIPLIGINRGN-------LGFLTDID--PK-NAYEQLEACLERGEFFVE 104 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhcc-------CCCcEEEEeCCC-------CcccccCC--HH-HHHHHHHHHHhcCCceEE
Confidence 46899999999999988877653 345654457777 66533222 22 34445565666 665544
Q ss_pred eeeeEEE
Q 017459 226 DSWHAVI 232 (371)
Q Consensus 226 D~w~i~v 232 (371)
.+..+.+
T Consensus 105 ~r~~L~~ 111 (272)
T PRK02231 105 ERFLLEA 111 (272)
T ss_pred EeeeEEE
Confidence 4444444
No 47
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=92.26 E-value=0.28 Score=46.78 Aligned_cols=36 Identities=28% Similarity=0.250 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCC
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGT 188 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGT 188 (371)
.+.|.|++.|||||+-.++..+.. ..+||--|.+|+
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~-------~~~PvlGIN~G~ 59 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMN-------SGKPVYGMNRGS 59 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcC-------CCCeEEEEeCCC
Confidence 456899999999999988877653 456665577775
No 48
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=83.17 E-value=2.2 Score=43.15 Aligned_cols=60 Identities=33% Similarity=0.561 Sum_probs=43.5
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCee
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPIC 223 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~~ 223 (371)
..|.||..||||||--+..-.. ...|||--+-+|| ||+=..|+. +..++.+..+.+++..
T Consensus 168 ~~D~iItLGGDGTvL~aS~LFq-------~~VPPV~sFslGs-------lGFLtpf~f---~~f~~~l~~v~~~~~~ 227 (409)
T KOG2178|consen 168 RFDLIITLGGDGTVLYASSLFQ-------RSVPPVLSFSLGS-------LGFLTPFPF---ANFQEQLARVLNGRAA 227 (409)
T ss_pred ceeEEEEecCCccEEEehhhhc-------CCCCCeEEeecCC-------ccccccccH---HHHHHHHHHHhcCcce
Confidence 4589999999999977765443 2578887777775 777554554 4677778888888843
No 49
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=82.97 E-value=3.5 Score=41.37 Aligned_cols=96 Identities=23% Similarity=0.250 Sum_probs=53.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEEe---ecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSE---VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl~~---~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GG 156 (371)
++++|+..+.-. ....+.+...|..... +.+.. ..+.+ ....++++++.+.+ ...+..+.||++||
T Consensus 24 ~rvlvVtd~~v~----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k----~~~~v~~~~~~~~~--~~~dr~~~IIAvGG 93 (355)
T cd08197 24 DKYLLVTDSNVE----DLYGHRLLEYLREAGAPVELLSVPSGEEHK----TLSTLSDLVERALA--LGATRRSVIVALGG 93 (355)
T ss_pred CeEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCcEEEEECC
Confidence 678888875432 2355667777765432 22211 11111 12334444433211 11233457888876
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeC--CCccc
Q 017459 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (371)
Q Consensus 157 DGTV~~Vln~L~~~~~~~~~~~~pigIIPl--GTGND 191 (371)
|++..+...+.... ...+|+..||. |++.|
T Consensus 94 -Gsv~D~ak~~A~~~----~rgip~I~IPTTlla~~d 125 (355)
T cd08197 94 -GVVGNIAGLLAALL----FRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred -cHHHHHHHHHHHHh----ccCCCEEEecCccccccc
Confidence 88988887775432 24579999998 67766
No 50
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=82.77 E-value=7.4 Score=34.37 Aligned_cols=79 Identities=16% Similarity=0.296 Sum_probs=46.8
Q ss_pred CCCChhhHHHHHHHHhhhcCe-eEEEeecccceeecchhHHHHHHhccchhhhccCC-CcEEEEEcCchHHHHHHHHHhh
Q 017459 92 GGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQ-KMRIVVAGGDGTVGWVLGSVGE 169 (371)
Q Consensus 92 G~~~g~~l~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~-~~~Ivv~GGDGTV~~Vln~L~~ 169 (371)
|+..-....+.....|...++ |++.+...+. .+..+.++.++.. ... .-.|.++|+++-+.-++.++.
T Consensus 8 gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR----~p~~l~~~~~~~~-----~~~~~viIa~AG~~a~Lpgvva~~t- 77 (150)
T PF00731_consen 8 GSTSDLPIAEEAAKTLEEFGIPYEVRVASAHR----TPERLLEFVKEYE-----ARGADVIIAVAGMSAALPGVVASLT- 77 (150)
T ss_dssp SSGGGHHHHHHHHHHHHHTT-EEEEEE--TTT----SHHHHHHHHHHTT-----TTTESEEEEEEESS--HHHHHHHHS-
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEeccC----CHHHHHHHHHHhc-----cCCCEEEEEECCCcccchhhheecc-
Confidence 443334567788888887765 8887765432 4556667766542 112 246778899999999998886
Q ss_pred cccCCCCCCCcEEEeeCCC
Q 017459 170 LNKQGREPVPPVAIIPLGT 188 (371)
Q Consensus 170 ~~~~~~~~~~pigIIPlGT 188 (371)
+.|-||+ |.-+
T Consensus 78 -------~~PVIgv-P~~~ 88 (150)
T PF00731_consen 78 -------TLPVIGV-PVSS 88 (150)
T ss_dssp -------SS-EEEE-EE-S
T ss_pred -------CCCEEEe-ecCc
Confidence 3355665 6544
No 51
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=82.40 E-value=4.4 Score=41.50 Aligned_cols=50 Identities=26% Similarity=0.368 Sum_probs=38.2
Q ss_pred CcEEEEEcCchHHHHHHHHHhhcccC---CCCCCCcEEEeeCCCccchhhhhCC
Q 017459 148 KMRIVVAGGDGTVGWVLGSVGELNKQ---GREPVPPVAIIPLGTGNDLSRSFGW 198 (371)
Q Consensus 148 ~~~Ivv~GGDGTV~~Vln~L~~~~~~---~~~~~~pigIIPlGTGNDlArsLG~ 198 (371)
...|+|+|||--++.||....+.-.. +...-..+-+||+|+ |.+||.||-
T Consensus 76 ~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl~~~rFlvIPlGs-~~varyLgs 128 (414)
T PF10254_consen 76 PVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWLNYLRFLVIPLGS-HPVARYLGS 128 (414)
T ss_pred ceEEEEEccHHHHHHHHHHHHHHhccCCcccccceeEEEecCCC-CHHHHHHhc
Confidence 46899999999999999888664210 112334588999999 999999974
No 52
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=81.83 E-value=9 Score=38.01 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=54.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
++++|+.-+.+ ...+.+++...|...++ +.+....+.+ ...+..+.++.+. ..+.|.||++|| |+
T Consensus 23 ~r~livt~~~~----~~~~~~~v~~~L~~~~i~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-GS 88 (351)
T cd08170 23 KRALIIADEFV----LDLVGAKIEESLAAAGIDARFEVFGGEC----TRAEIERLAEIAR-----DNGADVVIGIGG-GK 88 (351)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHHhCCCeEEEEEeCCcC----CHHHHHHHHHHHh-----hcCCCEEEEecC-ch
Confidence 66777753222 22467778888866532 2222222222 1133444443321 245689999998 77
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeC--CCccchhh
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPl--GTGNDlAr 194 (371)
+..+...+.-. ..+|+..||. |||--.+.
T Consensus 89 ~iD~aK~ia~~------~~~P~iaIPTTagTgse~t~ 119 (351)
T cd08170 89 TLDTAKAVADY------LGAPVVIVPTIASTDAPTSA 119 (351)
T ss_pred hhHHHHHHHHH------cCCCEEEeCCccccCccccc
Confidence 88888777542 3578999997 67655444
No 53
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=78.93 E-value=12 Score=37.69 Aligned_cols=100 Identities=19% Similarity=0.239 Sum_probs=52.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+..+.+-. ....+++...|....+ +. +....+.+ .....++.++.+. ..+.|.||++|| |
T Consensus 24 ~r~livt~~~~~~---~g~~~~v~~~L~~~gi~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG-G 90 (375)
T cd08194 24 KRPLIVTDKVMVK---LGLVDKLTDSLKKEGIESAIFDDVVSEP----TDESVEEGVKLAK-----EGGCDVIIALGG-G 90 (375)
T ss_pred CeEEEEcCcchhh---cchHHHHHHHHHHCCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 5788887655431 1255667777765432 21 21222222 1233444443321 245689999988 6
Q ss_pred HHHHHHHHHhhccc------------CCCCCCCcEEEeeC--CCccchh
Q 017459 159 TVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLS 193 (371)
Q Consensus 159 TV~~Vln~L~~~~~------------~~~~~~~pigIIPl--GTGNDlA 193 (371)
++..+...+.-... ......+|+..||. |||--..
T Consensus 91 S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagtGsE~t 139 (375)
T cd08194 91 SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGTGSEVT 139 (375)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCccccccC
Confidence 77777665531100 00124578999997 6665443
No 54
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=78.90 E-value=12 Score=37.22 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=53.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe--eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v--~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+..+.+- ....+++...|+..++ ..+....+.+ .....+++++.+ + ..+.|.||++|| |
T Consensus 23 ~r~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~----~-~~~~d~iiavGG-G 88 (345)
T cd08171 23 KKVVVIGGKTAL----AAAKDKIKAALEQSGIEITDFIWYGGES----TYENVERLKKNP----A-VQEADMIFAVGG-G 88 (345)
T ss_pred CEEEEEeCHHHH----HHHHHHHHHHHHHCCCeEEEEEecCCCC----CHHHHHHHHHHH----h-hcCCCEEEEeCC-c
Confidence 677777654432 2346777777765443 2222222222 123344444322 1 245689999998 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeC--CCccch
Q 017459 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDL 192 (371)
Q Consensus 159 TV~~Vln~L~~~~~~~~~~~~pigIIPl--GTGNDl 192 (371)
++..+...+... ..+|+..||. |||-..
T Consensus 89 s~~D~aK~ia~~------~~~p~i~VPTt~gtgse~ 118 (345)
T cd08171 89 KAIDTVKVLADK------LGKPVFTFPTIASNCAAV 118 (345)
T ss_pred HHHHHHHHHHHH------cCCCEEEecCccccCccc
Confidence 888888877643 3578888887 555433
No 55
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=78.82 E-value=10 Score=38.31 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=55.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
.++++|+..+.+-... ..++++...|...++ + .+....|.+ ....+.++++.+. ..+.|.||++||
T Consensus 26 ~kr~livtd~~~~~~~--g~~~~v~~~L~~~gi~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG- 93 (383)
T cd08186 26 ISKVLLVTGKSAYKKS--GAWDKVEPALDEHGIEYVLYNKVTPNP----TVDQVDEAAKLGR-----EFGAQAVIAIGG- 93 (383)
T ss_pred CCEEEEEcCccHHhhc--ChHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----HcCCCEEEEeCC-
Confidence 3688888776654322 245666666654432 1 111222222 1233444443321 234588999998
Q ss_pred hHHHHHHHHHhhccc-------------CCCCCCCcEEEeeC--CCccchhhhh
Q 017459 158 GTVGWVLGSVGELNK-------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (371)
Q Consensus 158 GTV~~Vln~L~~~~~-------------~~~~~~~pigIIPl--GTGNDlArsL 196 (371)
|++..+...+.-.-. ......+|+..||. |||...++.-
T Consensus 94 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~~a 147 (383)
T cd08186 94 GSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDRFA 147 (383)
T ss_pred ccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCCeE
Confidence 677776665532110 00123578999998 8877665544
No 56
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=77.19 E-value=15 Score=36.38 Aligned_cols=92 Identities=20% Similarity=0.125 Sum_probs=55.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV 160 (371)
++++|+..+.. ...+.+.+...|... .+....... . -....++++++.+. ..+.|.||++|| |++
T Consensus 24 ~~~liv~d~~~----~~~~~~~l~~~L~~~-~~~~~~~~~--~--p~~~~v~~~~~~~~-----~~~~D~iIavGG-Gs~ 88 (347)
T cd08172 24 KRPLIVTGPRS----WAAAKPYLPESLAAG-EAFVLRYDG--E--CSEENIERLAAQAK-----ENGADVIIGIGG-GKV 88 (347)
T ss_pred CeEEEEECHHH----HHHHHHHHHHHHhcC-eEEEEEeCC--C--CCHHHHHHHHHHHH-----hcCCCEEEEeCC-cHH
Confidence 67888887665 235667777777432 222222110 1 12234555544321 235688888887 889
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeC--CCccchh
Q 017459 161 GWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLS 193 (371)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~pigIIPl--GTGNDlA 193 (371)
..+...+... ..+|+..||. |||-..+
T Consensus 89 ~D~aK~ia~~------~~~p~i~VPTT~gtgse~t 117 (347)
T cd08172 89 LDTAKAVADR------LGVPVITVPTLAATCAAWT 117 (347)
T ss_pred HHHHHHHHHH------hCCCEEEecCccccCcccc
Confidence 8988888653 3578999997 6665444
No 57
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=77.01 E-value=8.5 Score=38.36 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhh-cCe--eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGK-EQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~-~~v--~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GG 156 (371)
.++++|+..+.--. ...+.+...|.. ..+ +.+....+.+ ....+.++.+.+.+ ....+.+.||++||
T Consensus 23 ~~k~livtd~~v~~----~~~~~v~~~L~~~~~~~~~~~~~~e~~k----~~~~v~~~~~~~~~--~~~~r~d~IIaiGG 92 (344)
T cd08169 23 FDQYFFISDSGVAD----LIAHYIAEYLSKILPVHILVIEGGEEYK----TFETVTRILERAIA--LGANRRTAIVAVGG 92 (344)
T ss_pred CCeEEEEECccHHH----HHHHHHHHHHHhhcCceEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCcEEEEECC
Confidence 36778887654422 355666666654 222 2222211211 22344444433211 01234678888876
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeC--CCccc
Q 017459 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (371)
Q Consensus 157 DGTV~~Vln~L~~~~~~~~~~~~pigIIPl--GTGND 191 (371)
|++..+...+.... ...+|+-.||. ++++|
T Consensus 93 -Gsv~D~ak~vA~~~----~rgip~i~VPTTlla~~d 124 (344)
T cd08169 93 -GATGDVAGFVASTL----FRGIAFIRVPTTLLAQSD 124 (344)
T ss_pred -cHHHHHHHHHHHHh----ccCCcEEEecCCcccccc
Confidence 78888887775432 24578999997 44444
No 58
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=76.98 E-value=8.2 Score=37.85 Aligned_cols=92 Identities=18% Similarity=0.233 Sum_probs=52.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhc-CeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKE-QVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~-~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
.++++|+..+..-. ...+.+...|... .+..+....|.+ ...+..++++.+. ..+.|.||++|| |
T Consensus 23 ~~~~liv~~~~~~~----~~~~~v~~~l~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-G 88 (332)
T cd07766 23 FDRALVVSDEGVVK----GVGEKVADSLKKLIAVHIFDGVGPNP----TFEEVKEAVERAR-----AAEVDAVIAVGG-G 88 (332)
T ss_pred CCeEEEEeCCchhh----hHHHHHHHHHHhcCcEEEeCCcCCCc----CHHHHHHHHHHHH-----hcCcCEEEEeCC-c
Confidence 35788887655433 3556666666542 221111122211 2234555554321 135688888886 8
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeC--CCc
Q 017459 159 TVGWVLGSVGELNKQGREPVPPVAIIPL--GTG 189 (371)
Q Consensus 159 TV~~Vln~L~~~~~~~~~~~~pigIIPl--GTG 189 (371)
++..+...+.... ...+|+..||. |||
T Consensus 89 s~~D~aK~ia~~~----~~~~p~i~iPTt~~tg 117 (332)
T cd07766 89 STLDTAKAVAALL----NRGLPIIIVPTTAATG 117 (332)
T ss_pred hHHHHHHHHHHHh----cCCCCEEEEeCCCchh
Confidence 8888888776532 23689999997 565
No 59
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=74.57 E-value=12 Score=36.90 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=50.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhc-CeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKE-QVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~-~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
++++|+..+..-. ..+.+++...|... .+..+....+.+ .....++.++.+. ..+.|.||++|| |+
T Consensus 23 ~~~lvv~~~~~~~---~g~~~~v~~~l~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~d~IiaiGG-Gs 89 (332)
T cd08180 23 KRVLIVTDPFMVK---SGMLDKVTDHLDSSIEVEIFSDVVPDP----PIEVVAKGIKKFL-----DFKPDIVIALGG-GS 89 (332)
T ss_pred CeEEEEeCchhhh---CccHHHHHHHHHhcCcEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEECC-ch
Confidence 6788888653322 12455666666542 121122222221 1233444443221 235689999998 66
Q ss_pred HHHHHHHHhhcccC-CCCCCCcEEEeeC--CCccch
Q 017459 160 VGWVLGSVGELNKQ-GREPVPPVAIIPL--GTGNDL 192 (371)
Q Consensus 160 V~~Vln~L~~~~~~-~~~~~~pigIIPl--GTGNDl 192 (371)
+..+...+.-.... ...+.+|+..||. |||--.
T Consensus 90 ~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagtgse~ 125 (332)
T cd08180 90 AIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGTGSEV 125 (332)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcchHhh
Confidence 66776654321110 1134579999996 777443
No 60
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=73.03 E-value=19 Score=36.32 Aligned_cols=104 Identities=19% Similarity=0.247 Sum_probs=54.5
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe--eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v--~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+.-+.+.... .+.+++...|...++ ..+....|.+ ......+.++.+ + ..+.|.||++|| |
T Consensus 29 ~r~livt~~~~~~~~--~~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-G 96 (382)
T cd08187 29 KKVLLVYGGGSIKKN--GLYDRVIASLKEAGIEVVELGGVEPNP----RLETVREGIELC----K-EEKVDFILAVGG-G 96 (382)
T ss_pred CEEEEEeCCcHHHhc--CcHHHHHHHHHHcCCeEEEECCccCCC----CHHHHHHHHHHH----H-HcCCCEEEEeCC-h
Confidence 677777665544322 345667777765332 2222222222 112333333321 1 245689999998 6
Q ss_pred HHHHHHHHHhhccc------------CCCCCCCcEEEeeC--CCccchhhhh
Q 017459 159 TVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (371)
Q Consensus 159 TV~~Vln~L~~~~~------------~~~~~~~pigIIPl--GTGNDlArsL 196 (371)
++..+...+.-... ......+|+-.||. |||-...+.-
T Consensus 97 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGsE~t~~a 148 (382)
T cd08187 97 SVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGSEMNGGA 148 (382)
T ss_pred HHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhhccCCCE
Confidence 77777766532100 00124578999996 7775555443
No 61
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=72.89 E-value=13 Score=37.04 Aligned_cols=103 Identities=16% Similarity=0.270 Sum_probs=55.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+.-+.+-... ...+.+...|...++ +. +....|.+ ....+.+.++.+. ..+.|.||++|| |
T Consensus 26 ~r~lvVt~~~~~~~~--g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 93 (357)
T cd08181 26 KRALIVTGKSSAKKN--GSLDDVTKALEELGIEYEIFDEVEENP----SLETIMEAVEIAK-----KFNADFVIGIGG-G 93 (357)
T ss_pred CEEEEEeCCchHhhc--CcHHHHHHHHHHcCCeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 678888766653322 234556666654332 21 11222222 1233444443321 235689999998 7
Q ss_pred HHHHHHHHHhhcc-----------cCCCCCCCcEEEeeC--CCccchhhh
Q 017459 159 TVGWVLGSVGELN-----------KQGREPVPPVAIIPL--GTGNDLSRS 195 (371)
Q Consensus 159 TV~~Vln~L~~~~-----------~~~~~~~~pigIIPl--GTGNDlArs 195 (371)
++..+...+.-.. .......+|+..||. |||-..++.
T Consensus 94 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~~ 143 (357)
T cd08181 94 SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQY 143 (357)
T ss_pred hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCCe
Confidence 7777776543210 001124579999997 888777763
No 62
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=72.78 E-value=24 Score=35.26 Aligned_cols=104 Identities=22% Similarity=0.227 Sum_probs=54.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV 160 (371)
++++|+..+.... ..+.+.+...|....++.+....|.+- ....++.++.+. ....+.|.||++|| |++
T Consensus 24 ~r~lvVtd~~~~~---~g~~~~v~~~L~~~~~~~~~~v~~~pt----~~~v~~~~~~~~---~~~~~~D~IIaiGG-GSv 92 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLARRLEALLGGRLAALIDDVAPNPD----VAQLDGLYARLW---GDEGACDLVIALGG-GSV 92 (355)
T ss_pred CeEEEEECcchhh---cchHHHHHHHhccCcEEEeCCCCCCcC----HHHHHHHHHHHH---hcCCCCCEEEEeCC-ccH
Confidence 6788887654321 235566777765433322222333221 233444443221 11123689999988 677
Q ss_pred HHHHHHHhhc---cc-------------CCCCCCCcEEEeeC--CCccchhhh
Q 017459 161 GWVLGSVGEL---NK-------------QGREPVPPVAIIPL--GTGNDLSRS 195 (371)
Q Consensus 161 ~~Vln~L~~~---~~-------------~~~~~~~pigIIPl--GTGNDlArs 195 (371)
..+...+.-. .. ....+.+|+..||. |||-..++.
T Consensus 93 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~~ 145 (355)
T TIGR03405 93 IDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTPW 145 (355)
T ss_pred HHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcCe
Confidence 7776554322 00 00124578999997 787665554
No 63
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=71.14 E-value=20 Score=35.95 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe--eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v--~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+.-+.+-.. ..+.+++...|.+.++ ..+....|.+ .....++.++.+ + ..+.|.||++|| |
T Consensus 24 ~r~livt~~~~~~~--~g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIavGG-G 91 (375)
T cd08179 24 KKAFIVTGGGSMKK--FGFLDKVEAYLKEAGIEVEVFEGVEPDP----SVETVLKGAEAM----R-EFEPDWIIALGG-G 91 (375)
T ss_pred CeEEEEeCchHHHh--CChHHHHHHHHHHcCCeEEEeCCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-c
Confidence 56777764433221 1355667777765332 1122222222 112344444322 1 235688999988 5
Q ss_pred HHHHHHHHHhhc---cc------------CCCCCCCcEEEeeC--CCccchhhh
Q 017459 159 TVGWVLGSVGEL---NK------------QGREPVPPVAIIPL--GTGNDLSRS 195 (371)
Q Consensus 159 TV~~Vln~L~~~---~~------------~~~~~~~pigIIPl--GTGNDlArs 195 (371)
++..+...+.-. +. ......+|+..||. |||--....
T Consensus 92 SviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t~~ 145 (375)
T cd08179 92 SPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVTAF 145 (375)
T ss_pred cHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhCCe
Confidence 666666554311 00 00023468999997 777655533
No 64
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=70.85 E-value=2.4 Score=41.85 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=44.8
Q ss_pred cCCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEe--eCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHcCCe
Q 017459 145 TRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAII--PLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASAGPI 222 (371)
Q Consensus 145 ~~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigII--PlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~g~~ 222 (371)
....|.|+-+|||||+-....-+.+ ...|-|||= |.|+---+. ++.+||.++..++. ++..|..
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~------~~~PViGvNtDP~~Seg~lc----L~~~~~~n~~~al~----k~~sgnF 168 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVID------DSKPVIGVNTDPTGSEGHLC----LPDKYPSNPAGALC----KLTSGNF 168 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhc------cCCceeeecCCCCcCcceEe----ccccCCCCcHHHHH----HHHhccH
Confidence 3456899999999999888775543 245666653 666654443 34555654444444 4555655
Q ss_pred eEeeeeeEEEe
Q 017459 223 CRLDSWHAVIQ 233 (371)
Q Consensus 223 ~~iD~w~i~v~ 233 (371)
..+-+-+|.++
T Consensus 169 ~wv~r~rir~t 179 (395)
T KOG4180|consen 169 EWVLRQRIRGT 179 (395)
T ss_pred HHhhhheeEEE
Confidence 54444444443
No 65
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=70.46 E-value=12 Score=37.08 Aligned_cols=95 Identities=20% Similarity=0.194 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
.++++|+..+..-. ...+.+.+.|..... +........+. ......++++.+.+.+ ....+.+.||++|| |
T Consensus 24 ~~~~livtd~~~~~----~~~~~l~~~L~~~g~~~~~~~~~~~e~-~~~~~~v~~~~~~~~~--~~~~r~d~IIaiGG-G 95 (345)
T cd08195 24 GSKILIVTDENVAP----LYLEKLKAALEAAGFEVEVIVIPAGEA-SKSLETLEKLYDALLE--AGLDRKSLIIALGG-G 95 (345)
T ss_pred CCeEEEEECCchHH----HHHHHHHHHHHhcCCceEEEEeCCCCC-cCCHHHHHHHHHHHHH--cCCCCCCeEEEECC-h
Confidence 36788888765542 356677777765421 22212111110 1122344444433211 11234578888887 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017459 159 TVGWVLGSVGELNKQGREPVPPVAIIPL 186 (371)
Q Consensus 159 TV~~Vln~L~~~~~~~~~~~~pigIIPl 186 (371)
++..+...+.... ...+|+..||.
T Consensus 96 sv~D~ak~vA~~~----~rgip~i~VPT 119 (345)
T cd08195 96 VVGDLAGFVAATY----MRGIDFIQIPT 119 (345)
T ss_pred HHHhHHHHHHHHH----hcCCCeEEcch
Confidence 8888887775322 24678999996
No 66
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=69.93 E-value=33 Score=33.87 Aligned_cols=88 Identities=15% Similarity=0.148 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV 160 (371)
++++|+..+... ..+.+++...|.....+... ..|.. ....++++.+.+. ..+.+.||++|| |++
T Consensus 26 ~~~liv~d~~~~----~~~~~~v~~~l~~~~~~~~~-~~~~~----~~~~v~~~~~~~~-----~~~~d~iIaiGG-Gs~ 90 (339)
T cd08173 26 GRVLVVTGPTTK----SIAGKKVEALLEDEGEVDVV-IVEDA----TYEEVEKVESSAR-----DIGADFVIGVGG-GRV 90 (339)
T ss_pred CeEEEEECCchH----HHHHHHHHHHHHhcCCeEEE-EeCCC----CHHHHHHHHHHhh-----hcCCCEEEEeCC-chH
Confidence 678888865543 24667777777654322111 12221 2244555554332 135688888887 889
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeCCCc
Q 017459 161 GWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (371)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~pigIIPlGTG 189 (371)
..+...+.-. ..+|+..||.=.+
T Consensus 91 ~D~aK~~a~~------~~~p~i~iPTT~~ 113 (339)
T cd08173 91 IDVAKVAAYK------LGIPFISVPTAAS 113 (339)
T ss_pred HHHHHHHHHh------cCCCEEEecCccc
Confidence 9988887642 4578999997433
No 67
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=69.77 E-value=14 Score=36.85 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE---EEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD---LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d---l~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~G 155 (371)
.++++++..+... ..+.+.+.+.|..... +. +....+.+ ....+.++.+.+.+ ....+.+.||++|
T Consensus 31 ~~~~livtd~~~~----~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~----~~~~v~~~~~~~~~--~~~~r~d~IIavG 100 (358)
T PRK00002 31 GKKVAIVTDETVA----PLYLEKLRASLEAAGFEVDVVVLPDGEQYK----SLETLEKIYDALLE--AGLDRSDTLIALG 100 (358)
T ss_pred CCeEEEEECCchH----HHHHHHHHHHHHhcCCceEEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCCEEEEEc
Confidence 4678888865542 2366777777765432 22 11122211 12334444432211 0123457888888
Q ss_pred CchHHHHHHHHHhhcccCCCCCCCcEEEeeC--CCccc
Q 017459 156 GDGTVGWVLGSVGELNKQGREPVPPVAIIPL--GTGND 191 (371)
Q Consensus 156 GDGTV~~Vln~L~~~~~~~~~~~~pigIIPl--GTGND 191 (371)
| |++..+...+.... ...+|+..||. ++.+|
T Consensus 101 G-Gsv~D~aK~iA~~~----~~gip~i~IPTT~~s~~d 133 (358)
T PRK00002 101 G-GVIGDLAGFAAATY----MRGIRFIQVPTTLLAQVD 133 (358)
T ss_pred C-cHHHHHHHHHHHHh----cCCCCEEEcCchhhhccc
Confidence 7 78888887775322 24678999997 34444
No 68
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=69.33 E-value=37 Score=33.91 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
++++|+.-+.. ...+.+++...|...+. +.+....+.+ .....+++++.+. ..+.|.||++|| |+
T Consensus 30 ~~~livtd~~~----~~~~~~~v~~~l~~~~~~~~~~~~~~ep----~~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 95 (366)
T PRK09423 30 KRALVIADEFV----LGIVGDRVEASLKEAGLTVVFEVFNGEC----SDNEIDRLVAIAE-----ENGCDVVIGIGG-GK 95 (366)
T ss_pred CEEEEEEChhH----HHHHHHHHHHHHHhCCCeEEEEEeCCCC----CHHHHHHHHHHHH-----hcCCCEEEEecC-hH
Confidence 67777764443 22366777777865432 2122222222 1123444443321 235689999998 78
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeC--CCccchhh
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLSR 194 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPl--GTGNDlAr 194 (371)
+..+...+.-. ..+|+..||. |||-..+.
T Consensus 96 v~D~aK~iA~~------~~~p~i~IPTtagtgSe~t~ 126 (366)
T PRK09423 96 TLDTAKAVADY------LGVPVVIVPTIASTDAPTSA 126 (366)
T ss_pred HHHHHHHHHHH------cCCCEEEeCCccccCccccC
Confidence 88888877642 3578999997 55554444
No 69
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=68.86 E-value=30 Score=34.05 Aligned_cols=34 Identities=24% Similarity=0.146 Sum_probs=26.5
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCC
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlG 187 (371)
+.+.||++|| |++..+...+... ..+|+..||.=
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~------~~~p~i~vPTt 108 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFL------RGIPLSVPTTN 108 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhh------cCCCEEEecCc
Confidence 5688888887 8899998887652 56788888873
No 70
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=68.69 E-value=15 Score=36.77 Aligned_cols=101 Identities=15% Similarity=0.256 Sum_probs=53.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
.++++|+..+.+-. ....+.+...|...+. +. +....+.+ ......++++.+. ..+.|.||++||
T Consensus 23 ~~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IiaiGG- 89 (370)
T cd08551 23 GRKALIVTDPGLVK---TGVLDKVIDSLKEAGIEVVIFDGVEPNP----TLSNVDAAVAAYR-----EEGCDGVIAVGG- 89 (370)
T ss_pred CCeEEEEeCcchhh---CccHHHHHHHHHHcCCeEEEECCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 36788887765543 1345566666654332 21 11122211 1234455544321 235688998888
Q ss_pred hHHHHHHHHHhhccc------------CCCCCCCcEEEeeC--CCccchh
Q 017459 158 GTVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLS 193 (371)
Q Consensus 158 GTV~~Vln~L~~~~~------------~~~~~~~pigIIPl--GTGNDlA 193 (371)
|++..+...+.-... ....+..|+..||. |||--.+
T Consensus 90 Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gtgse~t 139 (370)
T cd08551 90 GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGTGSEVT 139 (370)
T ss_pred chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcchhhcC
Confidence 677777666532210 00123679999998 6664333
No 71
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=67.80 E-value=30 Score=35.12 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=61.3
Q ss_pred CCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-EeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017459 79 PEAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (371)
Q Consensus 79 ~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GG 156 (371)
..++.+|+.-|.- ....+.+.+.+.|+..++ |.+ ..+.|.+-. ...++-++.+ + ..+.|.||+.||
T Consensus 28 g~~r~liVTd~~~---~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~----~~v~~~~~~~----~-~~~~D~iIalGG 95 (377)
T COG1454 28 GAKRALIVTDRGL---AKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI----ETVEAGAEVA----R-EFGPDTIIALGG 95 (377)
T ss_pred CCCceEEEECCcc---ccchhHHHHHHHHHhcCCeEEEecCCCCCCCH----HHHHHHHHHH----H-hcCCCEEEEeCC
Confidence 3477888876652 223477888888887762 222 223343321 2233222221 1 245689999998
Q ss_pred chHHHHHHHHHhhcccC------------CCCCCCcEEEeeC--CCccchhhhhCC
Q 017459 157 DGTVGWVLGSVGELNKQ------------GREPVPPVAIIPL--GTGNDLSRSFGW 198 (371)
Q Consensus 157 DGTV~~Vln~L~~~~~~------------~~~~~~pigIIPl--GTGNDlArsLG~ 198 (371)
|++..++.++.-+... ...+.+|+-.||. |||-...+.--+
T Consensus 96 -GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~aVi 150 (377)
T COG1454 96 -GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFAVI 150 (377)
T ss_pred -ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeEEE
Confidence 6666666655322110 0233478888986 888888877766
No 72
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=67.80 E-value=17 Score=36.58 Aligned_cols=104 Identities=13% Similarity=0.262 Sum_probs=54.4
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+..+..-. ....+++...|....+ +. +....+.+ .....+++++.+. ..+.|.||++|| |
T Consensus 29 ~~~lvv~~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIavGG-G 95 (377)
T cd08176 29 KKALIVTDKGLVK---IGVVEKVTDVLDEAGIDYVIYDGVKPNP----TITNVKDGLAVFK-----KEGCDFIISIGG-G 95 (377)
T ss_pred CeEEEECCchHhh---cCcHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 5677776544322 1355667777765432 21 21122221 1233444443321 235689999988 6
Q ss_pred HHHHHHHHHhhcc------------cCCCCCCCcEEEeeC--CCccchhhhhC
Q 017459 159 TVGWVLGSVGELN------------KQGREPVPPVAIIPL--GTGNDLSRSFG 197 (371)
Q Consensus 159 TV~~Vln~L~~~~------------~~~~~~~~pigIIPl--GTGNDlArsLG 197 (371)
++..+...+.-+. .......+|+..||. |||-..++.--
T Consensus 96 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~t~~av 148 (377)
T cd08176 96 SPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEVTINYV 148 (377)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhccCCcEE
Confidence 7766665553110 000124579999997 88876655443
No 73
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=66.98 E-value=19 Score=36.12 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=56.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+.-+.+-.. ..+.+++...|...++ + .+....|.+ .....++.++.+ + ..+.|.||++|| |
T Consensus 26 ~r~livt~~~~~~~--~g~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IiavGG-G 93 (380)
T cd08185 26 KKALIVTGNGSSKK--TGYLDRVIELLKQAGVEVVVFDKVEPNP----TTTTVMEGAALA----R-EEGCDFVVGLGG-G 93 (380)
T ss_pred CeEEEEeCCCchhh--ccHHHHHHHHHHHcCCeEEEeCCccCCC----CHHHHHHHHHHH----H-HcCCCEEEEeCC-c
Confidence 68888887655211 2466677777765432 2 122222222 123344444322 1 235689999998 6
Q ss_pred HHHHHHHHHhhccc-----------------CCCCCCCcEEEeeC--CCccchhhhhC
Q 017459 159 TVGWVLGSVGELNK-----------------QGREPVPPVAIIPL--GTGNDLSRSFG 197 (371)
Q Consensus 159 TV~~Vln~L~~~~~-----------------~~~~~~~pigIIPl--GTGNDlArsLG 197 (371)
++..+...+.-... ......+|+..||. |||--.++.-.
T Consensus 94 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~av 151 (380)
T cd08185 94 SSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEADPWAV 151 (380)
T ss_pred cHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccCCeEE
Confidence 66666665532100 00124578999996 78776555443
No 74
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=66.63 E-value=26 Score=34.63 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=50.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV 160 (371)
++++|+..+ +-.....+++.+.|....+..+....+.+ .....+++++.+ + ..+.|.||++|| |++
T Consensus 24 ~~~livt~~----~~~~~~~~~v~~~l~~~~~~~~~~~~~~p----~~~~v~~~~~~~----~-~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 24 SRALVLTTP----SLATKLAERVASALGDRVAGTFDGAVMHT----PVEVTEAAVAAA----R-EAGADGIVAIGG-GST 89 (337)
T ss_pred CeEEEEcCh----HHHHHHHHHHHHHhccCCcEEeCCCCCCC----CHHHHHHHHHHH----H-hcCCCEEEEeCC-cHH
Confidence 567777543 22223667777888654322222222221 112344444322 1 235688888887 889
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeC-CCccc
Q 017459 161 GWVLGSVGELNKQGREPVPPVAIIPL-GTGND 191 (371)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~pigIIPl-GTGND 191 (371)
..+...+.-. ..+|+..||. -||..
T Consensus 90 iD~aK~ia~~------~~~p~i~IPTtatgse 115 (337)
T cd08177 90 IDLAKAIALR------TGLPIIAIPTTLSGSE 115 (337)
T ss_pred HHHHHHHHHH------hcCCEEEEcCCchhhh
Confidence 9998887643 3578888885 34443
No 75
>PRK15138 aldehyde reductase; Provisional
Probab=66.60 E-value=29 Score=35.17 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV 160 (371)
++++|+.-+.+= +...+.+++...|....+..+....|.+- ....++.++.+ + ..+.|.||++|| |++
T Consensus 30 ~~~livt~~~~~--~~~g~~~~v~~~L~~~~~~~f~~v~~~p~----~~~v~~~~~~~----~-~~~~D~IIaiGG-GS~ 97 (387)
T PRK15138 30 ARVLITYGGGSV--KKTGVLDQVLDALKGMDVLEFGGIEPNPT----YETLMKAVKLV----R-EEKITFLLAVGG-GSV 97 (387)
T ss_pred CeEEEECCCchH--HhcCcHHHHHHHhcCCeEEEECCccCCCC----HHHHHHHHHHH----H-HcCCCEEEEeCC-hHH
Confidence 567776543331 11234566666664322222222333221 12344444322 1 246689999998 555
Q ss_pred HHHHHHHhhc---c------------cCCCCCCCcEEEeeC--CCccchhhhhC
Q 017459 161 GWVLGSVGEL---N------------KQGREPVPPVAIIPL--GTGNDLSRSFG 197 (371)
Q Consensus 161 ~~Vln~L~~~---~------------~~~~~~~~pigIIPl--GTGNDlArsLG 197 (371)
-.+...+.-. . .....+.+|+..||. |||-......-
T Consensus 98 iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~~av 151 (387)
T PRK15138 98 LDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNAGAV 151 (387)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCCCEE
Confidence 5555444211 0 001123468999997 88876555443
No 76
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=66.41 E-value=31 Score=34.25 Aligned_cols=93 Identities=16% Similarity=0.132 Sum_probs=53.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
++.+|+..+.+- +...+++...|....+ +++....+.+ ......++++.+. ..+.|.||++|| |+
T Consensus 23 ~~~liv~~~~~~----~~~~~~v~~~l~~~~i~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~d~IIavGG-Gs 88 (349)
T cd08550 23 SKVAVVGGKTVL----KKSRPRFEAALAKSIIVVDVIVFGGEC----STEEVVKALCGAE-----EQEADVIIGVGG-GK 88 (349)
T ss_pred CeEEEEEChHHH----HHHHHHHHHHHHhcCCeeEEEEcCCCC----CHHHHHHHHHHHH-----hcCCCEEEEecC-cH
Confidence 567777655443 2355777777765432 2332222111 1233444443321 235688888887 78
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeC--CCccchh
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPL--GTGNDLS 193 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPl--GTGNDlA 193 (371)
+..+...+... ...|+..||. |||-..+
T Consensus 89 ~~D~aK~ia~~------~~~p~i~VPTtagtgse~t 118 (349)
T cd08550 89 TLDTAKAVADR------LDKPIVIVPTIASTCAASS 118 (349)
T ss_pred HHHHHHHHHHH------cCCCEEEeCCccccCcccc
Confidence 88888887643 3578999997 6664333
No 77
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=66.35 E-value=33 Score=34.30 Aligned_cols=100 Identities=19% Similarity=0.259 Sum_probs=50.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+..+..-. ....+++.+.|...+. + .+....+.+ .....++.++.+. ..+.|.||++|| |
T Consensus 25 ~~~liv~~~~~~~---~~~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~d~IIaiGG-G 91 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLVARVLALLEDAGLAAALFDEVPPNP----TEAAVEAGLAAYR-----AGGCDGVIAFGG-G 91 (370)
T ss_pred CeEEEEcCcchhh---CccHHHHHHHHHHcCCeEEEeCCCCCCC----CHHHHHHHHHHHH-----hcCCCEEEEeCC-c
Confidence 5777776544321 1245667777765332 1 122222222 1123444443321 245689999988 6
Q ss_pred HHHHHHHHHhhccc----------------CCCCCCCcEEEeeC--CCccchh
Q 017459 159 TVGWVLGSVGELNK----------------QGREPVPPVAIIPL--GTGNDLS 193 (371)
Q Consensus 159 TV~~Vln~L~~~~~----------------~~~~~~~pigIIPl--GTGNDlA 193 (371)
++..+...+.-... ....+.+|+..||. |||-...
T Consensus 92 SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~t 144 (370)
T cd08192 92 SALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGTGSEVG 144 (370)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCchhhhhC
Confidence 77777766533210 00123478999997 6654333
No 78
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=65.61 E-value=37 Score=34.31 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=55.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe--eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v--~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
.++++|+.-+.. ....+++++...|...++ ..+..+.|.+- ....++.++.+ + ..+.|.||++||
T Consensus 31 ~~~~livt~~~~---~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~----~~~v~~~~~~~----~-~~~~D~IiaiGG- 97 (383)
T PRK09860 31 FTRTLIVTDNML---TKLGMAGDVQKALEERNIFSVIYDGTQPNPT----TENVAAGLKLL----K-ENNCDSVISLGG- 97 (383)
T ss_pred CCEEEEEcCcch---hhCccHHHHHHHHHHcCCeEEEeCCCCCCcC----HHHHHHHHHHH----H-HcCCCEEEEeCC-
Confidence 356776654311 112356677777765543 12222333221 13344444322 1 246689999998
Q ss_pred hHHHHHHHHHhhc---c---------cCCCCCCCcEEEeeC--CCccchhhhhCC
Q 017459 158 GTVGWVLGSVGEL---N---------KQGREPVPPVAIIPL--GTGNDLSRSFGW 198 (371)
Q Consensus 158 GTV~~Vln~L~~~---~---------~~~~~~~~pigIIPl--GTGNDlArsLG~ 198 (371)
|++-.+...+.-+ . .......+|+..||. |||-...+.--+
T Consensus 98 GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~~avi 152 (383)
T PRK09860 98 GSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCII 152 (383)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCceEEE
Confidence 4555555444310 0 001124579999997 888776665544
No 79
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=63.15 E-value=5.4 Score=33.27 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=31.0
Q ss_pred hhhhhhhhhcCcce-EEeeccccccccchhhhhhHH
Q 017459 14 SSMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (371)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (371)
..+|+..+..|..+ |||..|..|+-.++.+||...
T Consensus 63 ~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~ 98 (133)
T PF00782_consen 63 VEFIENAISEGGKVLVHCKAGLSRSGAVAAAYLMKK 98 (133)
T ss_dssp HHHHHHHHHTTSEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred HHhhhhhhcccceeEEEeCCCcccchHHHHHHHHHH
Confidence 35678888888889 999999999999999999885
No 80
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=62.96 E-value=23 Score=35.07 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE---EEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD---LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d---l~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GG 156 (371)
++++|+..+..- ....+.+.+.|...+. +. +....+.+ .....+++.+.+.+ ....+.+.||++||
T Consensus 21 ~~~livtd~~~~----~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~----~~~~v~~~~~~~~~--~~~~r~d~IIavGG 90 (344)
T TIGR01357 21 SKLVIITDETVA----DLYADKLLEALQALGYNVLKLTVPDGEESK----SLETVQRLYDQLLE--AGLDRSSTIIALGG 90 (344)
T ss_pred CeEEEEECCchH----HHHHHHHHHHHHhcCCceeEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCCEEEEEcC
Confidence 678888865442 2356777777765432 22 21111111 12334444433211 01234578888887
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017459 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (371)
Q Consensus 157 DGTV~~Vln~L~~~~~~~~~~~~pigIIPl 186 (371)
|++..+...+.... ...+|+..||.
T Consensus 91 -Gsv~D~aK~iA~~~----~~~~p~i~VPT 115 (344)
T TIGR01357 91 -GVVGDLAGFVAATY----MRGIRFIQVPT 115 (344)
T ss_pred -hHHHHHHHHHHHHH----ccCCCEEEecC
Confidence 78888887775322 24578999997
No 81
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=62.45 E-value=40 Score=33.94 Aligned_cols=104 Identities=17% Similarity=0.326 Sum_probs=52.7
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEE-EeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
.++++|+..+..-. ..+.+++...|....+ +.+ ....|.+ ......+.++.+ + ..+.|.||++||
T Consensus 29 ~~r~lvvt~~~~~~---~g~~~~v~~~L~~~~i~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IiaiGG- 95 (379)
T TIGR02638 29 FKKALVVTDKDLIK---FGVADKVTDLLDEAGIAYELFDEVKPNP----TITVVKAGVAAF----K-ASGADYLIAIGG- 95 (379)
T ss_pred CCEEEEEcCcchhh---ccchHHHHHHHHHCCCeEEEECCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 35777777543321 1255667777765432 211 1222222 113334443322 1 235689999988
Q ss_pred hHHHHHHHHHhhccc--------------CCCCCCCcEEEeeC--CCccchhhhh
Q 017459 158 GTVGWVLGSVGELNK--------------QGREPVPPVAIIPL--GTGNDLSRSF 196 (371)
Q Consensus 158 GTV~~Vln~L~~~~~--------------~~~~~~~pigIIPl--GTGNDlArsL 196 (371)
|++..+..++.-... ......+|+..||. |||-...+..
T Consensus 96 GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGse~t~~a 150 (379)
T TIGR02638 96 GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAAEVTINY 150 (379)
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhhhhCCEE
Confidence 666666654421100 00124578999997 7776555444
No 82
>PLN00180 NDF6 (NDH-dependent flow 6); Provisional
Probab=60.44 E-value=1.8 Score=38.12 Aligned_cols=13 Identities=54% Similarity=0.910 Sum_probs=11.0
Q ss_pred EEcCchHHHHHHH
Q 017459 153 VAGGDGTVGWVLG 165 (371)
Q Consensus 153 v~GGDGTV~~Vln 165 (371)
-.|||||+||+-.
T Consensus 130 gdGGDGT~hW~Yd 142 (180)
T PLN00180 130 GDGGDGTGHWVYE 142 (180)
T ss_pred ccCCCCceeeEee
Confidence 4699999999964
No 83
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=59.18 E-value=16 Score=34.99 Aligned_cols=94 Identities=16% Similarity=0.145 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
.++++++.-+. ..+..-+.++..|... .|++...... ..+-...++.++.+.+. ..+.+.||.+|| ||
T Consensus 19 ~~~~lvv~d~~----t~~~~g~~v~~~l~~~-g~~v~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~d~ii~vGg-G~ 86 (250)
T PF13685_consen 19 LKKVLVVTDEN----TYKAAGEKVEESLKSA-GIEVAVIEEF-VGDADEDEVEKLVEALR-----PKDADLIIGVGG-GT 86 (250)
T ss_dssp -SEEEEEEETT----HHHHHHHHHHHHHHTT-T-EEEEEE-E-E---BHHHHHHHHTTS-------TT--EEEEEES-HH
T ss_pred CCcEEEEEcCC----HHHHHHHHHHHHHHHc-CCeEEEEecC-CCCCCHHHHHHHHHHhc-----ccCCCEEEEeCC-cH
Confidence 35777877544 3344556777777654 3444322100 00112234555554321 235678888887 99
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccc
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGND 191 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGTGND 191 (371)
++.+....... ...|+-.+|.=--||
T Consensus 87 i~D~~K~~A~~------~~~p~isVPTa~S~D 112 (250)
T PF13685_consen 87 IIDIAKYAAFE------LGIPFISVPTAASHD 112 (250)
T ss_dssp HHHHHHHHHHH------HT--EEEEES--SSG
T ss_pred HHHHHHHHHHh------cCCCEEEeccccccc
Confidence 99999888653 567888998865554
No 84
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=58.64 E-value=74 Score=32.36 Aligned_cols=99 Identities=18% Similarity=0.152 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe----eEEEeecccceeecch-hHHHHHHhccchhhhccCCCcEEEEE
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV----FDLSEVKPHEFVQYGL-ACLEKLAELGDFCAKDTRQKMRIVVA 154 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v----~dl~~~~p~~~~t~~~-~~a~~la~~~~~~a~~~~~~~~Ivv~ 154 (371)
.++++|+..+.--.. ...+.+.+...|..... |+....-+.....+.. ....++.+.+.+ ....+.+.||++
T Consensus 42 ~~r~liVtD~~v~~~-~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~--~~~dr~d~IIai 118 (389)
T PRK06203 42 PKKVLVVIDSGVLRA-HPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINR--HGIDRHSYVLAI 118 (389)
T ss_pred CCeEEEEECchHHHh-hhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHH--cCCCCCceEEEe
Confidence 467888886544321 12356778888865432 3222110100011111 223444332211 113445688888
Q ss_pred cCchHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017459 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (371)
Q Consensus 155 GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPl 186 (371)
|| |++..+...+.... ...+|+-.||.
T Consensus 119 GG-Gsv~D~ak~iA~~~----~rgip~I~IPT 145 (389)
T PRK06203 119 GG-GAVLDMVGYAAATA----HRGVRLIRIPT 145 (389)
T ss_pred CC-cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 87 78888877765431 24578999996
No 85
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=56.95 E-value=6.9 Score=35.20 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=31.9
Q ss_pred chhhhhhhhhcCcce-EEeeccccccccchhhhhhHH
Q 017459 13 RSSMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (371)
Q Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (371)
=...|++..+-|..+ |||-.|-+|+-.++.+||...
T Consensus 94 ~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~ 130 (180)
T COG2453 94 IVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY 130 (180)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH
Confidence 356788899999888 999999999999999999875
No 86
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=56.41 E-value=51 Score=33.40 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+.-+..- .....+++...|....+ + .+....|.+ .....++.++.+ + ..+.|.||++|| |
T Consensus 22 ~k~liVtd~~~~---~~g~~~~v~~~L~~~gi~~~~f~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-G 88 (398)
T cd08178 22 KRAFIVTDRFMV---KLGYVDKVIDVLKRRGVETEVFSDVEPDP----SLETVRKGLELM----N-SFKPDTIIALGG-G 88 (398)
T ss_pred CeEEEEcChhHH---hCccHHHHHHHHHHCCCeEEEecCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-c
Confidence 677777643211 11256677777765432 1 111222222 112344444322 1 245689999998 5
Q ss_pred HHHHHHHHHh
Q 017459 159 TVGWVLGSVG 168 (371)
Q Consensus 159 TV~~Vln~L~ 168 (371)
++..+...+.
T Consensus 89 S~iD~AK~iA 98 (398)
T cd08178 89 SPMDAAKIMW 98 (398)
T ss_pred cHHHHHHHHH
Confidence 6666665553
No 87
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=56.15 E-value=36 Score=33.85 Aligned_cols=104 Identities=22% Similarity=0.290 Sum_probs=56.3
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCe--eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 82 ~llviiNP~SG~~~g~~l~~~l~~~L~~~~v--~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
+++||..+ +-.. ..+.+++...|.+..+ ..+....+.. ....++++++.+. ..+.|.||++|| |+
T Consensus 23 r~lvVt~~-~~~~--~~~~~~v~~~L~~~~i~~~~~~~~~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG-GS 89 (366)
T PF00465_consen 23 RVLVVTDP-SLSK--SGLVDRVLDALEEAGIEVQVFDGVGPNP----TLEDVDEAAEQAR-----KFGADCIIAIGG-GS 89 (366)
T ss_dssp EEEEEEEH-HHHH--HTHHHHHHHHHHHTTCEEEEEEEESSS-----BHHHHHHHHHHHH-----HTTSSEEEEEES-HH
T ss_pred CEEEEECc-hHHh--CccHHHHHHHHhhCceEEEEEecCCCCC----cHHHHHHHHHHHH-----hcCCCEEEEcCC-CC
Confidence 88888877 3322 2377888888855432 2222222222 1234455444321 246689999998 55
Q ss_pred HHHHHHHHhhcccC-------------CCCCCCcEEEeeC--CCccchhhhhCC
Q 017459 160 VGWVLGSVGELNKQ-------------GREPVPPVAIIPL--GTGNDLSRSFGW 198 (371)
Q Consensus 160 V~~Vln~L~~~~~~-------------~~~~~~pigIIPl--GTGNDlArsLG~ 198 (371)
+-.+...+.-.... ...+.+|+..||. |||-.+.+...+
T Consensus 90 ~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtGsE~t~~avi 143 (366)
T PF00465_consen 90 VMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTGSEVTPYAVI 143 (366)
T ss_dssp HHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSSGCCSSEEEE
T ss_pred cCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCccccccccccccc
Confidence 65665555332110 0123379999998 666566555443
No 88
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=55.60 E-value=81 Score=28.07 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=48.1
Q ss_pred hHHHHHHHHhhhcCe-eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhhcccCCCC
Q 017459 98 ELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGRE 176 (371)
Q Consensus 98 ~l~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~ 176 (371)
...+.....|...++ ||+.+...+ +.+..+.++++++.+ ..-...|.++|+.+-+.-++.++.
T Consensus 12 ~~~~~a~~~L~~~gi~~dv~V~SaH----Rtp~~~~~~~~~a~~----~g~~viIa~AG~aa~Lpgvva~~t-------- 75 (156)
T TIGR01162 12 PTMKKAADILEEFGIPYELRVVSAH----RTPELMLEYAKEAEE----RGIKVIIAGAGGAAHLPGMVAALT-------- 75 (156)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECcc----cCHHHHHHHHHHHHH----CCCeEEEEeCCccchhHHHHHhcc--------
Confidence 456677777776665 888887653 356778888775421 112345667799998888887764
Q ss_pred CCCcEEEeeCCCc
Q 017459 177 PVPPVAIIPLGTG 189 (371)
Q Consensus 177 ~~~pigIIPlGTG 189 (371)
..|+==+|.-++
T Consensus 76 -~~PVIgvP~~~~ 87 (156)
T TIGR01162 76 -PLPVIGVPVPSK 87 (156)
T ss_pred -CCCEEEecCCcc
Confidence 345555566543
No 89
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=55.59 E-value=7.6 Score=32.68 Aligned_cols=35 Identities=17% Similarity=0.067 Sum_probs=30.1
Q ss_pred hhhhhhhhhcCcce-EEeeccccccccchhhhhhHH
Q 017459 14 SSMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (371)
Q Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (371)
...|+..+..|..+ |||..|..|+-.++.+||...
T Consensus 68 ~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~ 103 (138)
T smart00195 68 VEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY 103 (138)
T ss_pred HHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH
Confidence 45667788888888 999999999999999998764
No 90
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=55.57 E-value=90 Score=31.26 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=52.1
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
++++|+..+.+. ..+++...|....+ +.+....+.+ ......+.++.+ + ..+.|.||++|| |+
T Consensus 23 ~r~livtd~~~~------~~~~v~~~L~~~g~~~~~~~~~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-GS 86 (374)
T cd08183 23 RRVLLVTGASSL------RAAWLIEALRAAGIEVTHVVVAGEP----SVELVDAAVAEA----R-NAGCDVVIAIGG-GS 86 (374)
T ss_pred CcEEEEECCchH------HHHHHHHHHHHcCCeEEEecCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEecC-ch
Confidence 678888766553 55667777765432 2111112211 112344444322 1 245689999998 67
Q ss_pred HHHHHHHHhhccc-----------C-----CCCCCCcEEEeeC--CCccchhh
Q 017459 160 VGWVLGSVGELNK-----------Q-----GREPVPPVAIIPL--GTGNDLSR 194 (371)
Q Consensus 160 V~~Vln~L~~~~~-----------~-----~~~~~~pigIIPl--GTGNDlAr 194 (371)
+..+...+.-... . .....+|+..||. |||--.++
T Consensus 87 ~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t~ 139 (374)
T cd08183 87 VIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVTK 139 (374)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhCC
Confidence 7776665532100 0 0124578999997 67655544
No 91
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=55.07 E-value=1e+02 Score=31.22 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE---EEeecccceeecc-hhHHHHHHhccchhhhccCCCcEEEEE
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD---LSEVKPHEFVQYG-LACLEKLAELGDFCAKDTRQKMRIVVA 154 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d---l~~~~p~~~~t~~-~~~a~~la~~~~~~a~~~~~~~~Ivv~ 154 (371)
.++++|+.++.-.. ....+.+.+...|...++ +. ....-|....... .....++.+.+.+ ....+.+.||+.
T Consensus 30 ~~r~lvVtD~~v~~-~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~--~~~~r~~~IIal 106 (369)
T cd08198 30 RPKVLVVIDSGVAQ-ANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINR--HGIDRHSYVIAI 106 (369)
T ss_pred CCeEEEEECcchHH-hhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHH--cCCCcCcEEEEE
Confidence 46788998875543 212356777777754431 22 1111111111122 1223344432211 113445688888
Q ss_pred cCchHHHHHHHHHhhcccCCCCCCCcEEEeeCC
Q 017459 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (371)
Q Consensus 155 GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlG 187 (371)
|| |++..+...+.... ...+|+-.||.=
T Consensus 107 GG-G~v~D~ag~vA~~~----~rGip~I~IPTT 134 (369)
T cd08198 107 GG-GAVLDAVGYAAATA----HRGVRLIRIPTT 134 (369)
T ss_pred CC-hHHHHHHHHHHHHh----cCCCCEEEECCC
Confidence 87 89999988776532 246888888854
No 92
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=54.24 E-value=29 Score=34.40 Aligned_cols=45 Identities=31% Similarity=0.525 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh---hhhCC
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlA---rsLG~ 198 (371)
.+-+.++++|||||+.-+ +.|.+ ..+++--||-==-||+. .++|.
T Consensus 93 ~~Id~LivIGGdgS~~~a-~~L~~-------~gi~vigiPkTIDNDl~gtd~tiGf 140 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIA-RRLAD-------KGLPVVGVPKTIDNDLEATDYTFGF 140 (324)
T ss_pred cCCCEEEEECCchHHHHH-HHHHh-------cCCCEEeeccccCCCCcCCccCcCH
Confidence 355899999999999755 34553 34788889988899997 34554
No 93
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=54.05 E-value=33 Score=35.79 Aligned_cols=50 Identities=34% Similarity=0.420 Sum_probs=34.9
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh---hhhCC
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlA---rsLG~ 198 (371)
+-+.++++|||||..-+..--....+ ....+++--||-===||+. +++|+
T Consensus 176 ~I~~L~vIGGdgT~~~A~~L~ee~~~--~g~~I~VIGIPKTIDNDI~~td~S~GF 228 (459)
T PTZ00286 176 GINILFTLGGDGTHRGALAIYKELRR--RKLNISVVGIPKTIDNDIPIIDESFGF 228 (459)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHH--hCCCceEEEeccccCCCCCCcccCcCc
Confidence 45789999999999866532221111 1345889999998889997 56665
No 94
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=53.68 E-value=58 Score=32.55 Aligned_cols=51 Identities=29% Similarity=0.268 Sum_probs=30.1
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcc----------c--CCCCCCCcEEEeeC--CCccchhhhhCC
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELN----------K--QGREPVPPVAIIPL--GTGNDLSRSFGW 198 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~----------~--~~~~~~~pigIIPl--GTGNDlArsLG~ 198 (371)
+.|.||++|| |++-.+...+.-.- . ....+.+|+..||. |||--..+.--+
T Consensus 81 ~~D~IIaiGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~~aVi 145 (347)
T cd08184 81 LPCAIVGIGG-GSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASRTAVL 145 (347)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCCcEEE
Confidence 5689999998 55656655542210 0 00123468999996 887766554433
No 95
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=53.38 E-value=55 Score=33.26 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=46.9
Q ss_pred hHHHHHHHHhhhcCe-eEE-EeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhhc---cc
Q 017459 98 ELKERLQELMGKEQV-FDL-SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGEL---NK 172 (371)
Q Consensus 98 ~l~~~l~~~L~~~~v-~dl-~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~~Vln~L~~~---~~ 172 (371)
.+.+++...|...++ +.+ ....|.+ .....++.++.+ + ..+.|.||++|| |++-.+...+.-. +.
T Consensus 64 g~~~~v~~~L~~~gi~~~~~~~v~~~P----~~~~v~~~~~~~----r-~~~~D~IiavGG-GS~iD~AKaia~~~~~~~ 133 (395)
T PRK15454 64 GMTAGLTRSLAVKGIAMTLWPCPVGEP----CITDVCAAVAQL----R-ESGCDGVIAFGG-GSVLDAAKAVALLVTNPD 133 (395)
T ss_pred ccHHHHHHHHHHcCCeEEEECCCCCCc----CHHHHHHHHHHH----H-hcCcCEEEEeCC-hHHHHHHHHHHHHHhCCC
Confidence 356677778866543 221 1222222 112344444322 1 246789999998 4555555443211 00
Q ss_pred ---------CCCCCCCcEEEeeC--CCccchhhhhCC
Q 017459 173 ---------QGREPVPPVAIIPL--GTGNDLSRSFGW 198 (371)
Q Consensus 173 ---------~~~~~~~pigIIPl--GTGNDlArsLG~ 198 (371)
....+.+|+..||. |||-...+.--+
T Consensus 134 ~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~~avi 170 (395)
T PRK15454 134 STLAEMSETSVLQPRLPLIAIPTTAGTGSETTNVTVI 170 (395)
T ss_pred ccHHHHhcccccCCCCCEEEECCCCcchhhhCCeEEE
Confidence 01123568999997 787766665443
No 96
>PRK06756 flavodoxin; Provisional
Probab=52.44 E-value=79 Score=26.91 Aligned_cols=29 Identities=10% Similarity=0.266 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKE 110 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~ 110 (371)
|++++||+=.. .|+.+++.+.+.+.|...
T Consensus 1 mmkv~IiY~S~--tGnTe~vA~~ia~~l~~~ 29 (148)
T PRK06756 1 MSKLVMIFASM--SGNTEEMADHIAGVIRET 29 (148)
T ss_pred CceEEEEEECC--CchHHHHHHHHHHHHhhc
Confidence 45788888554 456678888888888654
No 97
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=50.79 E-value=99 Score=31.02 Aligned_cols=48 Identities=29% Similarity=0.464 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhh---cc-------c--CCCCCCCcEEEeeC--CCccchhh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGE---LN-------K--QGREPVPPVAIIPL--GTGNDLSR 194 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~---~~-------~--~~~~~~~pigIIPl--GTGNDlAr 194 (371)
.+.|.||++|| |++-.+...+.- .+ . ....+.+|+..||. |||-..++
T Consensus 84 ~~~d~IIaiGG-GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 84 NGCDVIIAVGG-GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred cCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 45689999988 666666644321 10 0 00122468999997 78755555
No 98
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=49.95 E-value=59 Score=32.73 Aligned_cols=105 Identities=14% Similarity=0.301 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
.++++|+.-+..-. ..+.+++...|.+..+ +. +....+.+- .....+.++.+ + ..+.|.||++||
T Consensus 30 ~~~~lvvtd~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p~----~~~v~~~~~~~----~-~~~~D~IIaiGG- 96 (382)
T PRK10624 30 FKKALIVTDKTLVK---CGVVAKVTDVLDAAGLAYEIYDGVKPNPT----IEVVKEGVEVF----K-ASGADYLIAIGG- 96 (382)
T ss_pred CCEEEEEeCcchhh---CcchHHHHHHHHHCCCeEEEeCCCCCCcC----HHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 35778877643221 1255667777765432 21 112222211 12333333322 1 235688998888
Q ss_pred hHHHHHHHHHhhccc--------------CCCCCCCcEEEeeC--CCccchhhhhC
Q 017459 158 GTVGWVLGSVGELNK--------------QGREPVPPVAIIPL--GTGNDLSRSFG 197 (371)
Q Consensus 158 GTV~~Vln~L~~~~~--------------~~~~~~~pigIIPl--GTGNDlArsLG 197 (371)
|++..+...+.-... ......+|+..||. |||--.++..-
T Consensus 97 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~t~~av 152 (382)
T PRK10624 97 GSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEVTINYV 152 (382)
T ss_pred hHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhhcceee
Confidence 677777654421100 00124579999997 78766665544
No 99
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=49.16 E-value=1.2e+02 Score=30.09 Aligned_cols=45 Identities=29% Similarity=0.492 Sum_probs=28.1
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcc----------------cCCCCCCCcEEEeeC--CCccch
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELN----------------KQGREPVPPVAIIPL--GTGNDL 192 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~----------------~~~~~~~~pigIIPl--GTGNDl 192 (371)
+.|.||++|| |++..+...+.-.. .......+|+..||. |||--.
T Consensus 77 ~~D~IIavGG-Gs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagtgse~ 139 (367)
T cd08182 77 GPDAVLAVGG-GSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGTGSEV 139 (367)
T ss_pred CcCEEEEeCC-cHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCchhhh
Confidence 5688888887 67777776654320 000124578999997 666544
No 100
>PLN02834 3-dehydroquinate synthase
Probab=48.99 E-value=57 Score=33.72 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe----eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV----FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG 156 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v----~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GG 156 (371)
++++||.++... ....+.+...|...+. |+........ +.....++++++.+.+ ...++.+.||++||
T Consensus 101 ~rvlIVtD~~v~----~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~--~ksl~~v~~~~~~l~~--~~~dr~~~VIAiGG 172 (433)
T PLN02834 101 KRVLVVTNETVA----PLYLEKVVEALTAKGPELTVESVILPDGEK--YKDMETLMKVFDKALE--SRLDRRCTFVALGG 172 (433)
T ss_pred CEEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEEEecCCcC--CCCHHHHHHHHHHHHh--cCCCcCcEEEEECC
Confidence 678888866543 2366777777765432 2222111111 1122334444332211 11234567777777
Q ss_pred chHHHHHHHHHhhcccCCCCCCCcEEEeeCC
Q 017459 157 DGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (371)
Q Consensus 157 DGTV~~Vln~L~~~~~~~~~~~~pigIIPlG 187 (371)
|++..+...+.... ...+|+-.||.-
T Consensus 173 -Gsv~D~ak~~A~~y----~rgiplI~VPTT 198 (433)
T PLN02834 173 -GVIGDMCGFAAASY----QRGVNFVQIPTT 198 (433)
T ss_pred -hHHHHHHHHHHHHh----cCCCCEEEECCc
Confidence 78888887654322 246789999983
No 101
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=48.96 E-value=73 Score=31.44 Aligned_cols=85 Identities=11% Similarity=0.026 Sum_probs=49.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEEe--ecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSE--VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl~~--~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
++++||..+..-. ...+++...|...+. +.+.. ..+.+ ....++++++.+ + .+.+.||+.||
T Consensus 25 ~kvlivtd~~~~~----~~~~~i~~~L~~~~~~~~i~~~~~~~~p----~~~~v~~~~~~~----~--~~~d~IIaiGG- 89 (332)
T cd08549 25 SKIMIVCGNNTYK----VAGKEIIERLESNNFTKEVLERDSLLIP----DEYELGEVLIKL----D--KDTEFLLGIGS- 89 (332)
T ss_pred CcEEEEECCcHHH----HHHHHHHHHHHHcCCeEEEEecCCCCCC----CHHHHHHHHHHh----h--cCCCEEEEECC-
Confidence 6788888765532 223666777765432 22211 11110 123445555432 2 26688999988
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017459 158 GTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (371)
Q Consensus 158 GTV~~Vln~L~~~~~~~~~~~~pigIIPl 186 (371)
|++..+...+.-. ..+|+-.||.
T Consensus 90 Gsv~D~aK~iA~~------~gip~I~VPT 112 (332)
T cd08549 90 GTIIDLVKFVSFK------VGKPFISVPT 112 (332)
T ss_pred cHHHHHHHHHHHH------cCCCEEEeCC
Confidence 7888888877632 4578999996
No 102
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=48.45 E-value=77 Score=31.49 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=49.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcC-eeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQ-VFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~-v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
++++||..+.+-. ...+.+...|.... ++.+ ..|.. ....++++++.+. ..+.+.||++|| |+
T Consensus 35 ~~~livtd~~~~~----~~~~~l~~~l~~~~~~~~~--~~~~~----t~~~v~~~~~~~~-----~~~~d~IIaiGG-Gs 98 (350)
T PRK00843 35 GRALIVTGPTTKK----IAGDRVEENLEDAGDVEVV--IVDEA----TMEEVEKVEEKAK-----DVNAGFLIGVGG-GK 98 (350)
T ss_pred CeEEEEECCcHHH----HHHHHHHHHHHhcCCeeEE--eCCCC----CHHHHHHHHHHhh-----ccCCCEEEEeCC-ch
Confidence 5788888776642 23455666664432 2221 12221 2234455544321 124588888887 88
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCC
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGT 188 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGT 188 (371)
+..+...+.-. ...|+-.||.=-
T Consensus 99 v~D~ak~vA~~------rgip~I~IPTT~ 121 (350)
T PRK00843 99 VIDVAKLAAYR------LGIPFISVPTAA 121 (350)
T ss_pred HHHHHHHHHHh------cCCCEEEeCCCc
Confidence 88888777632 457888888633
No 103
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=48.24 E-value=54 Score=32.80 Aligned_cols=95 Identities=16% Similarity=0.250 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEEeecccceeecchhHHHHHHhccchhhhccCCC-cEEEEEcCc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQK-MRIVVAGGD 157 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~-~~Ivv~GGD 157 (371)
.++++||..+..- ....+.+.+.|..... +........+ .......++++.+.+.+ ...... +.||++||
T Consensus 26 ~~~~lvVtd~~v~----~~~~~~v~~~l~~~g~~~~~~v~~~~e-~~~s~~~v~~~~~~l~~--~~~~r~~d~IVaiGG- 97 (354)
T cd08199 26 SGRRFVVVDQNVD----KLYGKKLREYFAHHNIPLTILVLRAGE-AAKTMDTVLKIVDALDA--FGISRRREPVLAIGG- 97 (354)
T ss_pred CCeEEEEECccHH----HHHHHHHHHHHHhcCCceEEEEeCCCC-CCCCHHHHHHHHHHHHH--cCCCCCCCEEEEECC-
Confidence 4678888866542 1244666666754322 2211111111 01122344555433211 112334 77887776
Q ss_pred hHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017459 158 GTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (371)
Q Consensus 158 GTV~~Vln~L~~~~~~~~~~~~pigIIPl 186 (371)
|++..+...+.... ...+|+-.||.
T Consensus 98 G~v~D~ak~~A~~~----~rg~p~i~VPT 122 (354)
T cd08199 98 GVLTDVAGLAASLY----RRGTPYVRIPT 122 (354)
T ss_pred cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 78888888776422 24578888887
No 104
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=46.90 E-value=45 Score=34.62 Aligned_cols=50 Identities=32% Similarity=0.450 Sum_probs=33.6
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh---hhhCC
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS---RSFGW 198 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlA---rsLG~ 198 (371)
+-+.++++|||||+.-+..--..... ....+++--||-===||+. +++|+
T Consensus 172 ~I~~L~vIGGdgT~~gA~~l~ee~~~--~g~~I~VIGIPKTIDNDi~~td~S~GF 224 (443)
T PRK06830 172 NINILFVIGGDGTLRGASAIAEEIER--RGLKISVIGIPKTIDNDINFIQKSFGF 224 (443)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHH--hCCCceEEEeccccCCCCcCcccCCCH
Confidence 45789999999999766532211111 1345788888988889997 44554
No 105
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=46.80 E-value=1.1e+02 Score=30.66 Aligned_cols=103 Identities=18% Similarity=0.308 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
.++++|+..+..-. ...++++...|...++ +. +....+.+ .....++.++.+ + ..+.|.||++||
T Consensus 26 ~~~~lvvt~~~~~~---~g~~~~v~~~L~~~g~~~~~~~~v~~~p----~~~~v~~~~~~~----~-~~~~d~IIaiGG- 92 (374)
T cd08189 26 VKKVLIVTDKGLVK---LGLLDKVLEALEGAGIEYAVYDGVPPDP----TIENVEAGLALY----R-ENGCDAILAVGG- 92 (374)
T ss_pred CCeEEEEeCcchhh---cccHHHHHHHHHhcCCeEEEeCCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-
Confidence 35788887654321 1245667777765432 21 22222222 112334444322 1 235688998988
Q ss_pred hHHHHHHHHHhhccc-------------CCCCCCCcEEEeeC--CCccchhhh
Q 017459 158 GTVGWVLGSVGELNK-------------QGREPVPPVAIIPL--GTGNDLSRS 195 (371)
Q Consensus 158 GTV~~Vln~L~~~~~-------------~~~~~~~pigIIPl--GTGNDlArs 195 (371)
|++..+...+.-... ....+.+|+..||. |||-..++.
T Consensus 93 GS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGsE~t~~ 145 (374)
T cd08189 93 GSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGSEVTIA 145 (374)
T ss_pred ccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccccccCCe
Confidence 566666655432110 00113368999997 677555443
No 106
>PLN02564 6-phosphofructokinase
Probab=46.54 E-value=43 Score=35.19 Aligned_cols=45 Identities=29% Similarity=0.302 Sum_probs=30.4
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlA 193 (371)
+-+.++++|||||..-+..-.....+ ....+++--||-===||+.
T Consensus 176 ~Id~LivIGGDGS~~gA~~L~e~~~~--~g~~i~VIGIPKTIDNDI~ 220 (484)
T PLN02564 176 GINQVYIIGGDGTQKGASVIYEEIRR--RGLKVAVAGIPKTIDNDIP 220 (484)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHH--cCCCceEEEecccccCCCc
Confidence 45799999999999876432221111 1234567888988889987
No 107
>PF12219 End_tail_spike: Catalytic domain of bacteriophage endosialidase; InterPro: IPR024430 This entry represents the C-terminal domain of endosialidases which is approximately 160 amino acids in length. There are two conserved sequence motifs: VSR and YGA. The endosialidase protein forms homotrimeric molecules and this domain complexes into a tail-spike stalk. The stalk region folds in a triple beta-helix that is interrupted by a small triple beta-prism domain. The tail-spike is a multifunctional protein device used by the phage to fulfil the following functions: (i) to adsorb to the bacterial polySia capsule (ii) to de-polymerise the capsule to gain access to the outer bacterial membrane, and finally (iii) to mediate tight adhesion to the membrane, a prerequisite for the initiation of the infection cycle [].; PDB: 3JU4_A 3GW6_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=46.44 E-value=10 Score=32.90 Aligned_cols=14 Identities=43% Similarity=0.890 Sum_probs=11.1
Q ss_pred CcEEEEEcCchHHH
Q 017459 148 KMRIVVAGGDGTVG 161 (371)
Q Consensus 148 ~~~Ivv~GGDGTV~ 161 (371)
..|+|+||||||-+
T Consensus 85 gQRlIvsGGegtss 98 (160)
T PF12219_consen 85 GQRLIVSGGEGTSS 98 (160)
T ss_dssp G-EEEEESSSSSSG
T ss_pred ccEEEEeCCCCccc
Confidence 36999999999854
No 108
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=46.13 E-value=58 Score=32.22 Aligned_cols=88 Identities=11% Similarity=0.108 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEEe-ecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSE-VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl~~-~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+.-+.+- ....+++...|...++ +.+.. ..+.+. .......++++.+ +. +.|.||++|| |
T Consensus 24 ~~~livtd~~~~----~~~~~~v~~~l~~~~i~~~~~~~~~~~~~--pt~~~v~~~~~~~----~~--~~d~IIaIGG-G 90 (348)
T cd08175 24 KKALIVADENTY----AAAGKKVEALLKRAGVVVLLIVLPAGDLI--ADEKAVGRVLKEL----ER--DTDLIIAVGS-G 90 (348)
T ss_pred CcEEEEECCcHH----HHHHHHHHHHHHHCCCeeEEeecCCCccc--CCHHHHHHHHHHh----hc--cCCEEEEECC-c
Confidence 567777654332 2234667777765433 22111 112100 1123445554432 11 6689999998 7
Q ss_pred HHHHHHHHHhhcccCCCCCCCcEEEeeCC
Q 017459 159 TVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (371)
Q Consensus 159 TV~~Vln~L~~~~~~~~~~~~pigIIPlG 187 (371)
++..+...+.-. ..+|+-.||.=
T Consensus 91 s~~D~aK~vA~~------~~~p~i~IPTT 113 (348)
T cd08175 91 TINDITKYVSYK------TGIPYISVPTA 113 (348)
T ss_pred HHHHHHHHHHHh------cCCCEEEecCc
Confidence 888888887642 45789999963
No 109
>PRK10586 putative oxidoreductase; Provisional
Probab=45.07 E-value=1.7e+02 Score=29.36 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=26.7
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCcc
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGN 190 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGN 190 (371)
+.|.||.+|| |++..+...+... ..+|+..||.=-++
T Consensus 86 ~~d~iiavGG-Gs~iD~aK~~a~~------~~~p~i~vPT~a~t 122 (362)
T PRK10586 86 DRQVVIGVGG-GALLDTAKALARR------LGLPFVAIPTIAAT 122 (362)
T ss_pred CCCEEEEecC-cHHHHHHHHHHhh------cCCCEEEEeCCccc
Confidence 4588888887 6777888777642 46799999974333
No 110
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=43.55 E-value=1e+02 Score=30.23 Aligned_cols=42 Identities=31% Similarity=0.297 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlAr 194 (371)
.+-+.++++|||||+.-+. .|.+ ...+++--||-=-=||+.-
T Consensus 90 ~~Id~Li~IGGdgs~~~a~-~L~e------~~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQ-KLYE------EGGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred cCCCEEEEeCCchHHHHHH-HHHH------hhCCCEEeecccccCCCcC
Confidence 3558999999999987664 3433 1357888899999999984
No 111
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=41.78 E-value=1.2e+02 Score=32.14 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPl 186 (371)
.+.+.||++|| |++..++..+.... ...+|+-.+|.
T Consensus 268 ~r~D~IIAIGG-Gsv~D~AKfvA~~y----~rGi~~i~vPT 303 (542)
T PRK14021 268 TRSDAIVGLGG-GAATDLAGFVAATW----MRGIRYVNCPT 303 (542)
T ss_pred CCCcEEEEEcC-hHHHHHHHHHHHHH----HcCCCEEEeCC
Confidence 35688888887 89999988876432 25688888888
No 112
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=41.35 E-value=18 Score=30.06 Aligned_cols=34 Identities=21% Similarity=0.117 Sum_probs=28.5
Q ss_pred hhhhhhhhcCcce-EEeeccccccccchhhhhhHH
Q 017459 15 SMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (371)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (371)
.+|+..+..|..+ |||.-|..|+..++.+||...
T Consensus 72 ~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~ 106 (139)
T cd00127 72 DFIDDAREKGGKVLVHCLAGVSRSATLVIAYLMKT 106 (139)
T ss_pred HHHHHHHhcCCcEEEECCCCCchhHHHHHHHHHHH
Confidence 4567777778888 899999999999999998763
No 113
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=40.74 E-value=1.7e+02 Score=29.45 Aligned_cols=102 Identities=21% Similarity=0.254 Sum_probs=52.2
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-e-EEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-F-DLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~-dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+..+.... ....+++...|...++ + .+....|.+ ......+.++.+ + ..+.|.||++|| |
T Consensus 23 ~~~livt~~~~~~---~~~~~~v~~~L~~~~~~~~~f~~v~~~~----~~~~v~~~~~~~----~-~~~~D~IIaiGG-G 89 (386)
T cd08191 23 SRALIVTDERMAG---TPVFAELVQALAAAGVEVEVFDGVLPDL----PRSELCDAASAA----A-RAGPDVIIGLGG-G 89 (386)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCeEEEECCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-c
Confidence 6788887644432 2456667777765432 1 111111111 011122222211 1 245688999988 6
Q ss_pred HHHHHHHHHhhccc------------CCCCCCCcEEEeeC--CCccchhhh
Q 017459 159 TVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSRS 195 (371)
Q Consensus 159 TV~~Vln~L~~~~~------------~~~~~~~pigIIPl--GTGNDlArs 195 (371)
++..+...+.-... ....+.+|+..||. |||-..++.
T Consensus 90 S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t~~ 140 (386)
T cd08191 90 SCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVTPV 140 (386)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhCCe
Confidence 77777766642110 01123578999996 677655553
No 114
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=40.69 E-value=1.5e+02 Score=29.67 Aligned_cols=102 Identities=19% Similarity=0.234 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGD 157 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGD 157 (371)
.++++|+.-+.-- .....+++...|.+.++ +. +....+.+ ......+.++.+. ..+.|.||++||
T Consensus 26 ~~~~livt~~~~~---~~~~~~~v~~~L~~~~~~~~~~~~v~~~p----~~~~v~~~~~~~~-----~~~~D~IIaiGG- 92 (376)
T cd08193 26 AKRVLVVTDPGIL---KAGLIDPLLASLEAAGIEVTVFDDVEADP----PEAVVEAAVEAAR-----AAGADGVIGFGG- 92 (376)
T ss_pred CCeEEEEcCcchh---hCccHHHHHHHHHHcCCeEEEECCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeCC-
Confidence 3567776543211 11245667777765432 21 21222221 1233444444321 235689999988
Q ss_pred hHHHHHHHHHhhccc------------CCCCCCCcEEEeeC--CCccchhh
Q 017459 158 GTVGWVLGSVGELNK------------QGREPVPPVAIIPL--GTGNDLSR 194 (371)
Q Consensus 158 GTV~~Vln~L~~~~~------------~~~~~~~pigIIPl--GTGNDlAr 194 (371)
|++..+...+.-... .......|+-.||. |||-..+.
T Consensus 93 Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagtgSe~t~ 143 (376)
T cd08193 93 GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGTGSEVTP 143 (376)
T ss_pred chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcchHhhCC
Confidence 777777766543210 00123578999997 56644443
No 115
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=39.56 E-value=1.4e+02 Score=29.63 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlAr 194 (371)
.+-+.++++|||||+.-+. .|.+ ..+|+--||-===||+.-
T Consensus 91 ~~Id~Li~IGGdgs~~~a~-~L~e-------~~i~vigiPkTIDNDi~g 131 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAM-RLTE-------HGFPCVGLPGTIDNDIPG 131 (317)
T ss_pred cCCCEEEEECCchHHHHHH-HHHH-------cCCCEEEecccccCCCCC
Confidence 3558999999999998764 4543 358899999988999983
No 116
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.02 E-value=75 Score=27.81 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=37.9
Q ss_pred EEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc
Q 017459 150 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA 219 (371)
Q Consensus 150 ~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~ 219 (371)
.-+.++|+ |..+++..+... ....+-+-+|=+|| ||+.+... +....+.+.++++.+..
T Consensus 44 ~n~g~~G~-t~~~~~~~l~~~----~~~~pd~Vii~~G~-ND~~~~~~-----~~~~~~~l~~li~~i~~ 102 (191)
T cd01836 44 RLFAKTGA-TSADLLRQLAPL----PETRFDVAVISIGV-NDVTHLTS-----IARWRKQLAELVDALRA 102 (191)
T ss_pred EEEecCCc-CHHHHHHHHHhc----ccCCCCEEEEEecc-cCcCCCCC-----HHHHHHHHHHHHHHHHh
Confidence 44567888 456666666541 13567899999998 89875321 22345567777777765
No 117
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=38.86 E-value=1.6e+02 Score=30.02 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eE-EEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCch
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQV-FD-LSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDG 158 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~d-l~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDG 158 (371)
++++|+.-+..-. ....+++...|...++ +. +....+.+ ......+.++.+ + ..+.|.||++|| |
T Consensus 24 ~~vlivt~~~~~~---~g~~~~v~~~L~~~gi~~~~f~~v~~~p----~~~~v~~~~~~~----~-~~~~D~IIaiGG-G 90 (414)
T cd08190 24 RRVCLVTDPNLAQ---LPPVKVVLDSLEAAGINFEVYDDVRVEP----TDESFKDAIAFA----K-KGQFDAFVAVGG-G 90 (414)
T ss_pred CeEEEEECcchhh---cchHHHHHHHHHHcCCcEEEeCCCCCCc----CHHHHHHHHHHH----H-hcCCCEEEEeCC-c
Confidence 6777776543221 1245666767755432 22 22222222 112334433322 1 235689999998 5
Q ss_pred HHHHHHHHHh---hcc------------c---CCCCCCCcEEEeeC--CCccchhhhh
Q 017459 159 TVGWVLGSVG---ELN------------K---QGREPVPPVAIIPL--GTGNDLSRSF 196 (371)
Q Consensus 159 TV~~Vln~L~---~~~------------~---~~~~~~~pigIIPl--GTGNDlArsL 196 (371)
++..+...+. ..+ . ......+|+..||. |||-...+.-
T Consensus 91 SviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagTGSE~t~~a 148 (414)
T cd08190 91 SVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTTAGTGSETTGVA 148 (414)
T ss_pred cHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCCCchhhhhccce
Confidence 5555544432 100 0 00113368999997 6665544443
No 118
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=38.85 E-value=2.3e+02 Score=28.64 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=52.0
Q ss_pred CCCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEE--EeecccceeecchhHHHHHHhccchhhhccCCCcEEEEE
Q 017459 77 QPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDL--SEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVA 154 (371)
Q Consensus 77 ~~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl--~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~ 154 (371)
.....+++++.|+.=. ....+.+...|..... +. ....+.| ......+..++-...- .....+.+.||+.
T Consensus 30 ~~~~~k~~ivtd~~v~----~~y~~~~~~~l~~~g~-~v~~~~lp~GE-~~Ksl~~~~~i~~~ll--~~~~~R~s~iial 101 (360)
T COG0337 30 LLAGRKVAIVTDETVA----PLYLEKLLATLEAAGV-EVDSIVLPDGE-EYKSLETLEKIYDALL--EAGLDRKSTLIAL 101 (360)
T ss_pred hccCCeEEEEECchhH----HHHHHHHHHHHHhcCC-eeeEEEeCCCc-ccccHHHHHHHHHHHH--HcCCCCCcEEEEE
Confidence 3344488999987633 2346777777766543 22 2223332 2223344444443221 1224566788888
Q ss_pred cCchHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017459 155 GGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (371)
Q Consensus 155 GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPl 186 (371)
|| |+++.+..-..... ...+++--||.
T Consensus 102 GG-GvigDlaGF~Aaty----~RGv~fiqiPT 128 (360)
T COG0337 102 GG-GVIGDLAGFAAATY----MRGVRFIQIPT 128 (360)
T ss_pred CC-hHHHHHHHHHHHHH----HcCCCeEeccc
Confidence 87 88888876554432 13455555554
No 119
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=38.39 E-value=1.4e+02 Score=29.79 Aligned_cols=45 Identities=24% Similarity=0.155 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhc-ccCCCCCCCcEEEeeCCCccchh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGEL-NKQGREPVPPVAIIPLGTGNDLS 193 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~-~~~~~~~~~pigIIPlGTGNDlA 193 (371)
.+-+.++++|||||+.-+.. |.+. .+ ....+++--||-=--||+.
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~-L~e~~~~--~~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADL-LTEEWPS--KYQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHH-HHHHHHh--cCCCccEEEeeecccCCCc
Confidence 35589999999999976643 3221 11 1356889999976689987
No 120
>PRK09267 flavodoxin FldA; Validated
Probab=38.16 E-value=2.2e+02 Score=24.66 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhhh
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMGK 109 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~~ 109 (371)
|++++||+-..+| +.+++.+.|.+.|..
T Consensus 1 mmki~IiY~S~tG--nT~~vA~~Ia~~l~~ 28 (169)
T PRK09267 1 MAKIGIFFGSDTG--NTEDIAKMIQKKLGK 28 (169)
T ss_pred CCeEEEEEECCCC--hHHHHHHHHHHHhCC
Confidence 3578899965554 567888888888854
No 121
>PRK14072 6-phosphofructokinase; Provisional
Probab=37.04 E-value=89 Score=32.15 Aligned_cols=47 Identities=23% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlAr 194 (371)
.+-+.+|++|||||+.-+. .|.+.-. .....+++--||-===||+.-
T Consensus 102 ~~Id~LivIGGdgS~~~a~-~L~e~~~-~~g~~i~vIgIPkTIDNDl~g 148 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTAL-KVSQLAK-KMGYPIRCIGIPKTIDNDLPG 148 (416)
T ss_pred cCCCEEEEECChHHHHHHH-HHHHHHH-HhCCCceEEEeeecccCCCCC
Confidence 3558999999999997664 3332100 012457888899877899983
No 122
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=36.58 E-value=23 Score=31.68 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=33.5
Q ss_pred cccchhhhhhhhhcCcce-EEeeccccccccchhhhhhHH
Q 017459 10 IAARSSMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRVA 48 (371)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~~ 48 (371)
+..-.-.||+.-..|..+ |||--|+.|+-.+...||...
T Consensus 95 i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~ 134 (183)
T KOG1719|consen 95 IQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQH 134 (183)
T ss_pred HHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhh
Confidence 444456789999999999 999999999999999999863
No 123
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=36.44 E-value=1.7e+02 Score=27.59 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCc----hHHHHHHHHHhhcccCCCCCCCcEEEeeC-CCccchhhhhCC
Q 017459 146 RQKMRIVVAGGD----GTVGWVLGSVGELNKQGREPVPPVAIIPL-GTGNDLSRSFGW 198 (371)
Q Consensus 146 ~~~~~Ivv~GGD----GTV~~Vln~L~~~~~~~~~~~~pigIIPl-GTGNDlArsLG~ 198 (371)
...+.+++..|| ||..+++..|.+. ....++=+||. -+.+..|-.+|+
T Consensus 91 ~g~~v~~l~~GDp~~ys~~~~l~~~l~~~-----~~~~~veivPGIss~~a~aa~~g~ 143 (238)
T PRK05948 91 QGEDVAFACEGDVSFYSTFTYLAQTLQEL-----YPQVAIQTIPGVCSPLAAAAALGI 143 (238)
T ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHHhc-----CCCCCEEEECChhHHHHHHHHhCC
Confidence 345789999999 6666666666542 13567788886 334445555555
No 124
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=36.41 E-value=46 Score=30.06 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=29.4
Q ss_pred hhHHHHHHhccchhhhccCCCcEEEEEcC-chHHHHHHHHHhhcccCCCCCCCcEEEeeCC
Q 017459 128 LACLEKLAELGDFCAKDTRQKMRIVVAGG-DGTVGWVLGSVGELNKQGREPVPPVAIIPLG 187 (371)
Q Consensus 128 ~~~a~~la~~~~~~a~~~~~~~~Ivv~GG-DGTV~~Vln~L~~~~~~~~~~~~pigIIPlG 187 (371)
...+++|.+.. ......+|-.|| .|....+.++..+ .....+||+|-.
T Consensus 18 ~~~A~~lG~~l------a~~g~~lV~GGg~~GlM~a~a~ga~~------~gG~viGi~p~~ 66 (178)
T TIGR00730 18 KELAAELGAYL------AGQGWGLVYGGGRVGLMGAIADAAME------NGGTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHH------HHCCCEEEECCChHhHHHHHHHHHHh------cCCeEEEecchh
Confidence 34455555432 123345555556 6888888888765 245679999864
No 125
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=36.36 E-value=1.4e+02 Score=33.39 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=33.3
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlA 193 (371)
.+-+.++++|||||..-+. .|.+.........+|+-.||.===||+.
T Consensus 477 ~~Id~LivIGGdgs~~~a~-~L~~~~~~y~~~~i~vVgIPkTIDNDv~ 523 (762)
T cd00764 477 YGIDGLIIVGGFEAYKGLL-QLREAREQYEEFCIPMVLIPATVSNNVP 523 (762)
T ss_pred cCCCEEEEECChhHHHHHH-HHHHHHhhCCCCCccEEEecccccCCCC
Confidence 3458999999999998665 3433211111256899999999899987
No 126
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=36.15 E-value=2e+02 Score=28.69 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=39.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV 160 (371)
++++++..+.-. ....+.+.+.|.....+.+....+.+ ....+.++.+.+.+ ....+.+.||+.|| |++
T Consensus 20 ~r~lIVtD~~v~----~l~~~~l~~~L~~~~~~~~~~~e~~k----~l~~v~~~~~~~~~--~~~~r~d~iIaiGG-Gsv 88 (346)
T cd08196 20 ENDVFIVDANVA----ELYRDRLDLPLDAAPVIAIDATEENK----SLEAVSSVIESLRQ--NGARRNTHLVAIGG-GII 88 (346)
T ss_pred CeEEEEECccHH----HHHHHHHHHHhcCCeEEEeCCCCCCC----CHHHHHHHHHHHHH--cCCCCCcEEEEECC-hHH
Confidence 678888876542 22556666666432222222222221 22344444433211 11234577888877 778
Q ss_pred HHHHHHHhh
Q 017459 161 GWVLGSVGE 169 (371)
Q Consensus 161 ~~Vln~L~~ 169 (371)
..++..+..
T Consensus 89 ~D~ak~vA~ 97 (346)
T cd08196 89 QDVTTFVAS 97 (346)
T ss_pred HHHHHHHHH
Confidence 888777653
No 127
>PRK03202 6-phosphofructokinase; Provisional
Probab=35.43 E-value=1.6e+02 Score=29.20 Aligned_cols=41 Identities=29% Similarity=0.277 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlAr 194 (371)
.+-+.++++|||||+.-+. .|.+ ..+++--||-===||+.-
T Consensus 92 ~~Id~Li~IGGd~s~~~a~-~L~e-------~~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAK-RLTE-------HGIPVIGLPGTIDNDIAG 132 (320)
T ss_pred cCCCEEEEeCChHHHHHHH-HHHh-------cCCcEEEecccccCCCCC
Confidence 3558999999999998764 3543 367888899888899883
No 128
>PRK00536 speE spermidine synthase; Provisional
Probab=34.75 E-value=28 Score=33.48 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=14.5
Q ss_pred CCCcEEEEEcCc-hHHHHHH
Q 017459 146 RQKMRIVVAGGD-GTVGWVL 164 (371)
Q Consensus 146 ~~~~~Ivv~GGD-GTV~~Vl 164 (371)
.+..++|+.||| ||+.||+
T Consensus 72 ~pk~VLIiGGGDGg~~REvL 91 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLF 91 (262)
T ss_pred CCCeEEEEcCCchHHHHHHH
Confidence 345678888999 6888886
No 129
>PRK14071 6-phosphofructokinase; Provisional
Probab=34.60 E-value=1e+02 Score=31.09 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=33.1
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh---hhCC
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR---SFGW 198 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlAr---sLG~ 198 (371)
.+-+.++++|||||+.- +..|.+ ...+++--||-===||+.- ++|.
T Consensus 106 ~~Id~Li~IGGdgS~~~-a~~L~~------~~~i~vIgiPkTIDNDl~~td~t~Gf 154 (360)
T PRK14071 106 LGLDALIGIGGDGSLAI-LRRLAQ------QGGINLVGIPKTIDNDVGATEVSIGF 154 (360)
T ss_pred cCCCEEEEECChhHHHH-HHHHHH------hcCCcEEEecccccCCCcCcccCcCh
Confidence 35589999999999864 345543 1267888899877899863 4554
No 130
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=33.68 E-value=2e+02 Score=32.46 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=38.1
Q ss_pred CCcEEEEEcCCCCCCChhhHHHHHHHHhh--hcCe--eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEc
Q 017459 80 EAPMVVFINSRSGGRHGPELKERLQELMG--KEQV--FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAG 155 (371)
Q Consensus 80 ~~~llviiNP~SG~~~g~~l~~~l~~~L~--~~~v--~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~G 155 (371)
.++++|+..+..-. ..+.+++...|. ...+ +.+....|.+ .....+++++.+. ..+.|.||++|
T Consensus 480 ~~~~lvVtd~~~~~---~g~~~~v~~~L~~~~~~i~~~~~~~v~~np----~~~~v~~~~~~~~-----~~~~D~IIaiG 547 (862)
T PRK13805 480 KKRAFIVTDRFMVE---LGYVDKVTDVLKKRENGVEYEVFSEVEPDP----TLSTVRKGAELMR-----SFKPDTIIALG 547 (862)
T ss_pred CCEEEEEECcchhh---cchHHHHHHHHhcccCCCeEEEeCCCCCCc----CHHHHHHHHHHHH-----hcCCCEEEEeC
Confidence 46777777543321 125667777775 3221 1122222222 1233444443321 23558899898
Q ss_pred CchHHHHHHHHH
Q 017459 156 GDGTVGWVLGSV 167 (371)
Q Consensus 156 GDGTV~~Vln~L 167 (371)
| |++..+...+
T Consensus 548 G-GSviD~AK~i 558 (862)
T PRK13805 548 G-GSPMDAAKIM 558 (862)
T ss_pred C-chHHHHHHHH
Confidence 7 6666666655
No 131
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=32.18 E-value=1.1e+02 Score=30.69 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=47.5
Q ss_pred CCCCcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcC-
Q 017459 78 PPEAPMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGG- 156 (371)
Q Consensus 78 ~~~~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GG- 156 (371)
+...++++.+---|= +.-.+.+++...|...+++++.-+.|.+.++. ...+.++++ .++-+-|+++||
T Consensus 27 ~~~~kVLi~YGGGSI--KrnGvydqV~~~Lkg~~~~E~~GVEPNP~~~T-v~kaV~i~k--------ee~idflLAVGGG 95 (384)
T COG1979 27 PKDAKVLIVYGGGSI--KKNGVYDQVVEALKGIEVIEFGGVEPNPRLET-LMKAVEICK--------EENIDFLLAVGGG 95 (384)
T ss_pred cccCeEEEEecCccc--cccchHHHHHHHhcCceEEEecCCCCCchHHH-HHHHHHHHH--------HcCceEEEEecCc
Confidence 344889998842222 22347888888888777788888888775432 233444443 245688888888
Q ss_pred ---chHHHHHH
Q 017459 157 ---DGTVGWVL 164 (371)
Q Consensus 157 ---DGTV~~Vl 164 (371)
|||=-=.+
T Consensus 96 SViD~tK~IAa 106 (384)
T COG1979 96 SVIDGTKFIAA 106 (384)
T ss_pred chhhhHHHHHh
Confidence 55543333
No 132
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=31.28 E-value=70 Score=27.55 Aligned_cols=58 Identities=21% Similarity=0.165 Sum_probs=33.7
Q ss_pred EEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc
Q 017459 152 VVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA 219 (371)
Q Consensus 152 vv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~ 219 (371)
...+||. ..+++..+... .....|.+.+|=+|| ||+.+... +....+.+.++++.+.+
T Consensus 28 ~Gi~G~~-~~~~~~~~~~~---~~~~~p~~vvi~~G~-ND~~~~~~-----~~~~~~~~~~lv~~i~~ 85 (171)
T cd04502 28 RGFGGST-LADCLHYFDRL---VLPYQPRRVVLYAGD-NDLASGRT-----PEEVLRDFRELVNRIRA 85 (171)
T ss_pred cCcccch-HHHHHHHHHhh---hccCCCCEEEEEEec-CcccCCCC-----HHHHHHHHHHHHHHHHH
Confidence 4557774 44555444332 113467799999998 88754221 23345566777776653
No 133
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=30.37 E-value=2.9e+02 Score=29.68 Aligned_cols=87 Identities=17% Similarity=0.203 Sum_probs=55.1
Q ss_pred cEEEEEcCCCCCCChhhHHHHHHHHhhhcCe-eEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHH
Q 017459 82 PMVVFINSRSGGRHGPELKERLQELMGKEQV-FDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTV 160 (371)
Q Consensus 82 ~llviiNP~SG~~~g~~l~~~l~~~L~~~~v-~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV 160 (371)
.+.||. |+..-....+.....|...++ |++.+...+ +.+..+.++++++.. ..-...|.++|+.+.+
T Consensus 412 ~v~i~~----gs~sd~~~~~~~~~~l~~~g~~~~~~v~sah----r~~~~~~~~~~~~~~----~~~~v~i~~ag~~~~l 479 (577)
T PLN02948 412 LVGIIM----GSDSDLPTMKDAAEILDSFGVPYEVTIVSAH----RTPERMFSYARSAHS----RGLQVIIAGAGGAAHL 479 (577)
T ss_pred eEEEEE----CchhhHHHHHHHHHHHHHcCCCeEEEEECCc----cCHHHHHHHHHHHHH----CCCCEEEEEcCccccc
Confidence 355555 333223566777777877665 888877654 356677887765431 1123467778999999
Q ss_pred HHHHHHHhhcccCCCCCCCcEEEeeCCCc
Q 017459 161 GWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (371)
Q Consensus 161 ~~Vln~L~~~~~~~~~~~~pigIIPlGTG 189 (371)
.-|+.++. ..|+-=+|..+|
T Consensus 480 ~~~~a~~t---------~~pvi~vp~~~~ 499 (577)
T PLN02948 480 PGMVASMT---------PLPVIGVPVKTS 499 (577)
T ss_pred hHHHhhcc---------CCCEEEcCCCCC
Confidence 99988774 345555666554
No 134
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=30.23 E-value=99 Score=34.33 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=31.9
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlA 193 (371)
+-+.++++|||||..-+.. |.+.........+|+-.||-===||+.
T Consensus 478 ~Id~LivIGGdgs~~~a~~-L~~~~~~~~~~~i~vvgIPkTIDNDi~ 523 (745)
T TIGR02478 478 KIDGLLIIGGFEAFEALLQ-LEQAREKYPAFRIPMVVIPATISNNVP 523 (745)
T ss_pred CCCEEEEeCChHHHHHHHH-HHHHHhhCCCCCccEEEecccccCCCC
Confidence 4589999999999976543 222111111245889999998899997
No 135
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=27.54 E-value=2.4e+02 Score=28.94 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhh-cccCCCCCCCcEEEeeCCCccchh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGE-LNKQGREPVPPVAIIPLGTGNDLS 193 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~-~~~~~~~~~~pigIIPlGTGNDlA 193 (371)
.+-+.++++|||||..-+.. |.+ ..+ ....+++--||-===||+.
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~-L~~~~~~--~g~~i~vvgIPkTIDNDl~ 156 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAAD-LAAYLAE--NGYDLTVVGLPKTIDNDVV 156 (403)
T ss_pred cCCCEEEEECChhHHHHHHH-HHHHHHH--hCCCceEEEeeeeeeCCCC
Confidence 35589999999999976643 322 111 0236889999988889986
No 136
>PLN02884 6-phosphofructokinase
Probab=27.48 E-value=1e+02 Score=31.65 Aligned_cols=45 Identities=27% Similarity=0.295 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhh-cccCCCCCCCcEEEeeCCCccchh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGE-LNKQGREPVPPVAIIPLGTGNDLS 193 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~-~~~~~~~~~~pigIIPlGTGNDlA 193 (371)
.+-+.++++|||||+.-+.. |.+ ... ....+++--||-===||+.
T Consensus 142 ~~Id~LivIGGdgS~~~a~~-L~~~~~~--~g~~i~vIGIPkTIDNDi~ 187 (411)
T PLN02884 142 RGINMLFVLGGNGTHAGANA-IHNECRK--RKMKVSVVGVPKTIDNDIL 187 (411)
T ss_pred cCCCEEEEECCchHHHHHHH-HHHHHHH--cCCCceEEeccccccCCCc
Confidence 34589999999999976642 222 110 1244788889988889986
No 137
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.35 E-value=1.3e+02 Score=26.09 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=33.1
Q ss_pred EEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc
Q 017459 150 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA 219 (371)
Q Consensus 150 ~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~ 219 (371)
.=..+|||+++...+..+.. ..+|.+-+|=+|| ||+.... +..+.++.+++.+.+
T Consensus 35 ~N~g~~G~~~~~~~~~~~~~------~~~pd~vii~~G~-ND~~~~~--------~~~~~~~~~i~~i~~ 89 (177)
T cd01844 35 INLGFSGNARLEPEVAELLR------DVPADLYIIDCGP-NIVGAEA--------MVRERLGPLVKGLRE 89 (177)
T ss_pred EEeeecccccchHHHHHHHH------hcCCCEEEEEecc-CCCccHH--------HHHHHHHHHHHHHHH
Confidence 34667888876544333222 2467788898888 7763221 334567777776654
No 138
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=25.81 E-value=59 Score=30.84 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=26.2
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCc
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTG 189 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTG 189 (371)
....|+++|-||++-.|+.+|.+ .|+--+|.-+|
T Consensus 173 ~~~lIVvAGMEGaLPsvvagLvD---------~PVIavPTsVG 206 (254)
T COG1691 173 ADVLIVVAGMEGALPSVVAGLVD---------VPVIAVPTSVG 206 (254)
T ss_pred CCeEEEEcccccchHHHHHhccC---------CCeEecccccc
Confidence 34588999999999999999975 45666676443
No 139
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=25.71 E-value=42 Score=31.95 Aligned_cols=33 Identities=6% Similarity=-0.085 Sum_probs=27.7
Q ss_pred hhhhhhhhcCcce-EEeeccccccccchhhhhhH
Q 017459 15 SMIDSIRGCGLSG-MRIDKEDLRRKLSIPEYLRV 47 (371)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~r~~~~~p~yl~~ 47 (371)
.+++..++.|..+ |||.-|.+|+-.+++.||..
T Consensus 161 ~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~ 194 (241)
T PTZ00393 161 TIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194 (241)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4456666678778 99999999999999999975
No 140
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=24.98 E-value=3.4e+02 Score=27.49 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCCCCChhhHHHHHHHHhhhcCeeEEEe-ecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchH
Q 017459 81 APMVVFINSRSGGRHGPELKERLQELMGKEQVFDLSE-VKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGT 159 (371)
Q Consensus 81 ~~llviiNP~SG~~~g~~l~~~l~~~L~~~~v~dl~~-~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGT 159 (371)
++.+|+.-+. -..-..+++...|...+. .... ..+. -..++.+++++.+. ..+.+.||.+|| |+
T Consensus 31 ~~~lvv~g~~----~~~~~~~~~~~~l~~~g~-~~~~~~~~~----a~~~ev~~~~~~~~-----~~~~d~vIGVGG-Gk 95 (360)
T COG0371 31 SRALVVTGEN----TYAIAGEKVEKSLKDEGL-VVHVVFVGE----ASEEEVERLAAEAG-----EDGADVVIGVGG-GK 95 (360)
T ss_pred CceEEEEChh----HHHHHHHHHHHHhcccCc-ceeeeecCc----cCHHHHHHHHHHhc-----ccCCCEEEEecC-cH
Confidence 5666665332 233445677777765432 1111 1111 12244555554321 135678888888 78
Q ss_pred HHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhh
Q 017459 160 VGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRS 195 (371)
Q Consensus 160 V~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArs 195 (371)
+-.+...+.. ....|+-++|.=..+|=.-|
T Consensus 96 ~iD~aK~~A~------~~~~pfIsvPT~AS~Da~~S 125 (360)
T COG0371 96 TIDTAKAAAY------RLGLPFISVPTIASTDAITS 125 (360)
T ss_pred HHHHHHHHHH------HcCCCEEEecCccccccccC
Confidence 8888888765 36789999998776664443
No 141
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=24.66 E-value=1.1e+02 Score=31.31 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhc-ccCCCCCCCcEEEeeCC
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGEL-NKQGREPVPPVAIIPLG 187 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~-~~~~~~~~~pigIIPlG 187 (371)
...|.||+-|||-||.++-..+... +.....++..+++|-.-
T Consensus 167 ~~~D~vv~wGgd~ti~~ir~~~~~~~~~i~fg~k~S~avi~~~ 209 (399)
T PF05893_consen 167 QQADAVVAWGGDETIRAIRQPLPPGARLIEFGPKYSFAVIDAE 209 (399)
T ss_pred HHCCEEEEeCCHHHHHHHHHHcCCCCcEeeeCCceEEEEEcCc
Confidence 4568999999999999998744211 11122455566666544
No 142
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=24.65 E-value=1.3e+02 Score=26.02 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=31.0
Q ss_pred CcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc
Q 017459 148 KMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA 219 (371)
Q Consensus 148 ~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~ 219 (371)
...++.+||.| +-+.+|=+|| ||+.+..+. ...+....+.++++.+.+
T Consensus 45 ~~~~~~~~g~~--------------------pd~vii~~G~-ND~~~~~~~---~~~~~~~~~~~li~~i~~ 92 (169)
T cd01831 45 EYSIIAYSGIG--------------------PDLVVINLGT-NDFSTGNNP---PGEDFTNAYVEFIEELRK 92 (169)
T ss_pred cEEEEEecCCC--------------------CCEEEEECCc-CCCCCCCCC---CHHHHHHHHHHHHHHHHH
Confidence 35677889988 4588999998 888543221 022345567777777654
No 143
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=23.63 E-value=4.9e+02 Score=22.63 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCCChhhHHHHHHHHhhh
Q 017459 83 MVVFINSRSGGRHGPELKERLQELMGK 109 (371)
Q Consensus 83 llviiNP~SG~~~g~~l~~~l~~~L~~ 109 (371)
++||+= |..|+.+++.+.|...|..
T Consensus 2 i~IiY~--S~tGnTe~vA~~Ia~~l~~ 26 (167)
T TIGR01752 2 IGIFYG--TDTGNTEGIAEKIQKELGE 26 (167)
T ss_pred EEEEEE--CCCChHHHHHHHHHHHhCC
Confidence 566664 4556677899999888864
No 144
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=23.37 E-value=6.1e+02 Score=25.54 Aligned_cols=41 Identities=32% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS 193 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlA 193 (371)
..-+.+|++|||||..-.. -|.+. -..++-=||-===||++
T Consensus 93 ~gId~LvvIGGDgS~~gA~-~Lae~------~~i~vVGvPkTIDNDi~ 133 (347)
T COG0205 93 LGIDALVVIGGDGSYTGAA-LLAEE------GGIPVVGVPKTIDNDIS 133 (347)
T ss_pred cCCCEEEEECCCChHHHHH-HHHHh------cCCcEEecCCCccCCCc
Confidence 3458999999999988664 34431 22677777877779998
No 145
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=23.33 E-value=3.6e+02 Score=25.71 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=45.2
Q ss_pred HHHHHHHhhhcCeeEEEeecccceeecchhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhh-cccCCCCCC
Q 017459 100 KERLQELMGKEQVFDLSEVKPHEFVQYGLACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGE-LNKQGREPV 178 (371)
Q Consensus 100 ~~~l~~~L~~~~v~dl~~~~p~~~~t~~~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~~Vln~L~~-~~~~~~~~~ 178 (371)
.+.+...+......+++...|... . ...++++.+. ....|.|++.|-||.-.+.+..+.+ .+. ...
T Consensus 4 ~~~l~~~~~~~~~~H~tliDP~k~-~----~~~ei~~~~~-----~~GTDaImIGGS~gvt~~~~~~~v~~ik~---~~~ 70 (240)
T COG1646 4 EKYLLEKLDWRGKRHLTLIDPDKT-E----EADEIAEAAA-----EAGTDAIMIGGSDGVTEENVDNVVEAIKE---RTD 70 (240)
T ss_pred HHHHHHHhhhccceEEEEeCcccc-c----ccHHHHHHHH-----HcCCCEEEECCcccccHHHHHHHHHHHHh---hcC
Confidence 345555554444556677777542 1 2233333211 2457999999999987655544433 221 478
Q ss_pred CcEEEeeCCCc
Q 017459 179 PPVAIIPLGTG 189 (371)
Q Consensus 179 ~pigIIPlGTG 189 (371)
.|+-+.|.+..
T Consensus 71 lPvilfP~~~~ 81 (240)
T COG1646 71 LPVILFPGSPS 81 (240)
T ss_pred CCEEEecCChh
Confidence 89999997653
No 146
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=23.07 E-value=1.3e+02 Score=32.28 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=33.9
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh-----hhhCC
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS-----RSFGW 198 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlA-----rsLG~ 198 (371)
+-+.+|++|||||...+. .|.+.-. .....+++--||-===|||. .++|+
T Consensus 164 ~Id~LviIGGd~S~~~A~-~Lae~~~-~~~~~i~VIGIPkTIDNDl~~~~id~s~GF 218 (555)
T PRK07085 164 KLDGLVIIGGDDSNTNAA-ILAEYFA-KHGCKTQVIGVPKTIDGDLKNEFIETSFGF 218 (555)
T ss_pred CCCEEEEeCCchHHHHHH-HHHHHHH-HhCCCccEEEEeeeecCCCCCCcccccCCH
Confidence 447899999999987664 3332110 01246888889987789997 45565
No 147
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=22.78 E-value=1e+02 Score=27.23 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=28.7
Q ss_pred hhHHHHHHhccchhhhccCCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCC
Q 017459 128 LACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGT 188 (371)
Q Consensus 128 ~~~a~~la~~~~~~a~~~~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGT 188 (371)
...+++|.+... +....|+..|+.|-...+.++..+ .....+||+|.+-
T Consensus 17 ~~~A~~lg~~La------~~g~~lv~Gg~~GlM~a~a~ga~~------~gg~viGVlp~~l 65 (159)
T TIGR00725 17 YEIAYRLGKELA------KKGHILINGGRTGVMEAVSKGARE------AGGLVVGILPDED 65 (159)
T ss_pred HHHHHHHHHHHH------HCCCEEEcCCchhHHHHHHHHHHH------CCCeEEEECChhh
Confidence 344555554321 233455554556776777666654 2456799999764
No 148
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=22.41 E-value=2.6e+02 Score=26.70 Aligned_cols=29 Identities=21% Similarity=-0.059 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeC
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPL 186 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPl 186 (371)
...|.+|..|| +|+.|++. ...|.-++|.
T Consensus 240 ~~aDl~Is~~G-~T~~E~~a-----------~g~P~i~i~~ 268 (279)
T TIGR03590 240 NEADLAIGAAG-STSWERCC-----------LGLPSLAICL 268 (279)
T ss_pred HHCCEEEECCc-hHHHHHHH-----------cCCCEEEEEe
Confidence 45688899999 99999972 3467777776
No 149
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=22.23 E-value=2.9e+02 Score=25.03 Aligned_cols=64 Identities=22% Similarity=0.275 Sum_probs=36.0
Q ss_pred CcEEEEEcCchHHH-----HHHHHHhhcccCCCCCCCcE-EEe---------eCCCccchhhhhCCCCCC--CCcHHHHH
Q 017459 148 KMRIVVAGGDGTVG-----WVLGSVGELNKQGREPVPPV-AII---------PLGTGNDLSRSFGWGGSF--PFAWKSAV 210 (371)
Q Consensus 148 ~~~Ivv~GGDGTV~-----~Vln~L~~~~~~~~~~~~pi-gII---------PlGTGNDlArsLG~g~~~--p~~~~~al 210 (371)
..+|++.=|||+++ |.++..... ..|+ .|+ |.+...+.++.+||.... .....+++
T Consensus 97 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~-------~~~li~vvdnN~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l 169 (195)
T cd02007 97 KRKVIAVIGDGALTGGMAFEALNNAGYL-------KSNMIVILNDNEMSISPNVGTPGNLFEELGFRYIGPVDGHNIEAL 169 (195)
T ss_pred CCeEEEEEcccccccChHHHHHHHHHHh-------CCCEEEEEECCCcccCCCCCCHHHHHHhcCCCccceECCCCHHHH
Confidence 46899999999987 444444332 1122 111 233456777888986542 22234466
Q ss_pred HHHHHHHH
Q 017459 211 KRTLQRAS 218 (371)
Q Consensus 211 ~~~l~~i~ 218 (371)
.++++.+.
T Consensus 170 ~~a~~~a~ 177 (195)
T cd02007 170 IKVLKEVK 177 (195)
T ss_pred HHHHHHHH
Confidence 66666543
No 150
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=22.19 E-value=87 Score=30.36 Aligned_cols=42 Identities=29% Similarity=0.307 Sum_probs=32.2
Q ss_pred CCCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh
Q 017459 146 RQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlAr 194 (371)
.+-+.++++|||||+..+ +.|.+. ..+++--||-=--||+.-
T Consensus 91 ~~Id~Li~IGG~gs~~~a-~~L~~~------~~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 91 LGIDALIVIGGDGSMKGA-HKLSEE------FGIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp TTESEEEEEESHHHHHHH-HHHHHH------HHSEEEEEEEETTSSCTT
T ss_pred hCCCEEEEecCCCHHHHH-HHHHhc------CceEEEEEeccccCCcCC
Confidence 345799999999998776 455531 237899999988899985
No 151
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=22.14 E-value=74 Score=30.92 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=16.7
Q ss_pred CCCcEEEEEcCch-HHHHHHHHHh
Q 017459 146 RQKMRIVVAGGDG-TVGWVLGSVG 168 (371)
Q Consensus 146 ~~~~~Ivv~GGDG-TV~~Vln~L~ 168 (371)
.+...||+.+||| +.+.-++.|.
T Consensus 75 ~Pd~~VV~i~GDG~~f~ig~~eL~ 98 (279)
T PRK11866 75 NPKLTVIGYGGDGDGYGIGLGHLP 98 (279)
T ss_pred CCCCcEEEEECChHHHHccHHHHH
Confidence 4557899999999 4766665553
No 152
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=22.01 E-value=1.3e+02 Score=32.51 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=33.2
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchh-----hhhCC
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLS-----RSFGW 198 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlA-----rsLG~ 198 (371)
+-+.+|++|||||...+. .|.+.-. .....+++--||-===||+. .++|+
T Consensus 173 ~Id~LvvIGGddS~~~A~-~Lae~~~-~~~~~i~VIGIPKTIDNDL~~~~td~s~GF 227 (610)
T PLN03028 173 KLDGLVIIGGVTSNTDAA-QLAETFA-EAKCKTKVVGVPVTLNGDLKNQFVETNVGF 227 (610)
T ss_pred CCCEEEEeCCchHHHHHH-HHHHHHH-HcCCCceEEEeceeeeCCCCCCCCCCCcCH
Confidence 447899999999987664 2222100 01246788888987789997 55665
No 153
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=21.52 E-value=1.7e+02 Score=31.22 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=30.7
Q ss_pred CCcEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEeeCCCccchhh
Q 017459 147 QKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSR 194 (371)
Q Consensus 147 ~~~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIPlGTGNDlAr 194 (371)
+-+.+|++|||||...+. .|.+.-. .....+++--||-===||+..
T Consensus 161 ~Id~LviIGGdgS~~~A~-~Lae~~~-~~g~~i~VIGIPkTIDNDl~~ 206 (539)
T TIGR02477 161 KLDGLVIIGGDDSNTNAA-LLAEYFA-KHGLKTQVIGVPKTIDGDLKN 206 (539)
T ss_pred CCCEEEEeCCchHHHHHH-HHHHHHH-hcCCCceEEEEeeeecCCCCC
Confidence 447899999999987664 2322100 012457888888877899974
No 154
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=21.17 E-value=1e+02 Score=26.18 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=21.6
Q ss_pred EEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEee
Q 017459 150 RIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIP 185 (371)
Q Consensus 150 ~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIP 185 (371)
.|+.-||=||+-|+...+.-.+. +.....|+.++-
T Consensus 57 ~I~lPGG~GTl~El~~~~~~~~l-~~~~~~Piil~~ 91 (133)
T PF03641_consen 57 FIALPGGIGTLDELFEALTLMQL-GRHNKVPIILLN 91 (133)
T ss_dssp EEEES-SHHHHHHHHHHHHHHHT-TSSTS-EEEEEE
T ss_pred EEEEecCCchHHHHHHHHHHHhh-ccccCCCEEEeC
Confidence 56666999999999998864322 222333766654
No 155
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=21.07 E-value=2.8e+02 Score=30.89 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCchHHHHHHH----------HHhhccc-----CCCCCCCcEEEeeCCCccchh
Q 017459 146 RQKMRIVVAGGDGTVGWVLG----------SVGELNK-----QGREPVPPVAIIPLGTGNDLS 193 (371)
Q Consensus 146 ~~~~~Ivv~GGDGTV~~Vln----------~L~~~~~-----~~~~~~~pigIIPlGTGNDlA 193 (371)
.+-+.++++|||||+.-+.. .|.+..+ ......+++--||-===||+.
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~ 155 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMC 155 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCC
Confidence 35589999999999876531 1111000 011346788889954489998
No 156
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=20.45 E-value=1.2e+02 Score=26.64 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=22.6
Q ss_pred cEEEEEcCchHHHHHHHHHhhcccCCCCCCCcEEEee
Q 017459 149 MRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIP 185 (371)
Q Consensus 149 ~~Ivv~GGDGTV~~Vln~L~~~~~~~~~~~~pigIIP 185 (371)
-.|++-||=||+.|+...+. .+-|+.+++
T Consensus 94 a~IvlpGG~GTL~E~~~a~~--------~~kpv~~l~ 122 (159)
T TIGR00725 94 VVVSVGGGYGTAIEILGAYA--------LGGPVVVLR 122 (159)
T ss_pred EEEEcCCchhHHHHHHHHHH--------cCCCEEEEE
Confidence 35666799999999998886 346788877
No 157
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.32 E-value=1.6e+02 Score=26.13 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=24.9
Q ss_pred CCCcEEEeeCCCccchhhhhCCCCCCCCcHHHHHHHHHHHHHc
Q 017459 177 PVPPVAIIPLGTGNDLSRSFGWGGSFPFAWKSAVKRTLQRASA 219 (371)
Q Consensus 177 ~~~pigIIPlGTGNDlArsLG~g~~~p~~~~~al~~~l~~i~~ 219 (371)
.++-+-+|=+|| ||+.+.+++. +....+.++++++.+.+
T Consensus 78 ~~pd~vii~lGt-ND~~~~~~~~---~~~~~~~l~~lv~~i~~ 116 (208)
T cd01839 78 SPLDLVIIMLGT-NDLKSYFNLS---AAEIAQGLGALVDIIRT 116 (208)
T ss_pred CCCCEEEEeccc-cccccccCCC---HHHHHHHHHHHHHHHHh
Confidence 467788999998 9987655441 22234456666666654
Done!