BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017461
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O7P|A Chain A, Crystal Structure Of The E.Coli Fucose:proton Symporter,
Fucp (N162a)
Length = 438
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 122 NMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180
N++ +LP + F GLIQS+F++GY + I GI + KA + G+ ++
Sbjct: 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102
Query: 181 IATALT-PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGM 239
+ AL P A + LV + G G A N ++ P + L L +
Sbjct: 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFA 162
Query: 240 YLGSVTGLAFSPFLI 254
G++ + F LI
Sbjct: 163 SFGAIIAVVFGQSLI 177
>pdb|3O7Q|A Chain A, Crystal Structure Of A Major Facilitator Superfamily (Mfs)
Transporter, Fucp, In The Outward Conformation
Length = 438
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 122 NMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS 180
N++ +LP + F GLIQS+F++GY + I GI + KA + G+ ++
Sbjct: 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102
Query: 181 IATALT-PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGM 239
+ AL P A + LV + G G A N ++ P + L L +
Sbjct: 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN 162
Query: 240 YLGSVTGLAFSPFLI 254
G++ + F LI
Sbjct: 163 SFGAIIAVVFGQSLI 177
>pdb|3CSR|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSZ|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT0|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT1|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CT5|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
Length = 159
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 157 IAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF 196
I G+W + G LGFG+V W+ A+ A GLP+
Sbjct: 48 INPGLWQNLDEGNTSLGFGLVQWTPASNYINWANSQGLPY 87
>pdb|3CSQ|A Chain A, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|B Chain B, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|C Chain C, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
pdb|3CSQ|D Chain D, Crystal And Cryoem Structural Studies Of A Cell Wall
Degrading Enzyme In The Bacteriophage Phi29 Tail
Length = 334
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 157 IAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF 196
I G+W + G LGFG+V W+ A+ A GLP+
Sbjct: 48 INPGLWQNLDEGNTSLGFGLVQWTPASNYINWANSQGLPY 87
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 260 PSVFYSFGSLGTVWFTVWLSKAHSSP 285
P+ F S G + T W + W S AH P
Sbjct: 614 PASFASDGDMNTFWHSKWSSPAHEGP 639
>pdb|2IUM|A Chain A, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUM|B Chain B, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUM|C Chain C, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (C2 Crystal Form)
pdb|2IUN|A Chain A, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|B Chain B, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|C Chain C, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|D Chain D, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|E Chain E, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
pdb|2IUN|F Chain F, Structure Of The C-Terminal Head Domain Of The Avian
Adenovirus Celo Long Fibre (P21 Crystal Form)
Length = 248
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 242 GSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFT-----VWLSKAHSSPAEDPQLRPAEK 296
G+ T L FSP + +G + + S+ + W+ V +K H P QL+ A
Sbjct: 134 GATTAL-FSP---NPYGSLNTITTLPSIASDWYVPESNLVTYTKIHFKPTGSQQLQLASG 189
Query: 297 KLIVSSCASKEPVKTIPWGLI 317
+L+V+ A+K PV+T + LI
Sbjct: 190 ELVVA--AAKSPVQTTKYELI 208
>pdb|2J1A|A Chain A, Structure Of Cbm32 From Clostridium Perfringens Beta-N-
Acetylhexosaminidase Gh84c In Complex With Galactose
pdb|2J1E|A Chain A, High Resolution Crystal Structure Of Cbm32 From A
N-Acetyl- Beta-Hexosaminidase In Complex With Lacnac
Length = 150
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 260 PSVFYSFGSLGTVWFTVWLSKAHSSP 285
P+ F S G + T W + W S AH P
Sbjct: 27 PASFASDGDMNTFWHSKWSSPAHEGP 52
>pdb|1Z7L|A Chain A, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|B Chain B, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
pdb|1Z7L|C Chain C, Crystal Structure Of Fragment Of Mouse
Ubiquitin-Activating Enzyme
Length = 276
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 295 EKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGT 337
E+ L ++ E ++ + L+L +P W V+ CH+W T
Sbjct: 59 ERTLRLAGTQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHT 101
>pdb|2J7M|A Chain A, Characterization Of A Family 32 Cbm
Length = 149
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 260 PSVFYSFGSLGTVWFTVWLSKAHSSP 285
P+ F S G + T W + W S AH P
Sbjct: 26 PASFASDGDMNTFWHSKWSSPAHEGP 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,253,528
Number of Sequences: 62578
Number of extensions: 403413
Number of successful extensions: 915
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 13
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)