Query         017461
Match_columns 371
No_of_seqs    327 out of 2429
Neff          10.4
Searched_HMMs 29240
Date          Mon Mar 25 14:48:51 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017461hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1pw4_A Glycerol-3-phosphate tr 100.0 1.3E-30 4.3E-35  244.3  21.7  265  100-367    24-298 (451)
  2 3o7q_A L-fucose-proton symport 100.0 7.2E-30 2.4E-34  238.4  24.6  252  101-367    23-305 (438)
  3 2gfp_A EMRD, multidrug resista 100.0 1.2E-28   4E-33  225.6  15.0  243  107-367     3-245 (375)
  4 4aps_A DI-OR tripeptide H+ sym  99.9 2.4E-24 8.2E-29  204.0  19.1  167  112-280    21-196 (491)
  5 4gc0_A D-xylose-proton symport  99.9 5.6E-24 1.9E-28  201.5  17.4  184  100-286     8-225 (491)
  6 2xut_A Proton/peptide symporte  99.8 8.3E-20 2.9E-24  174.3  17.3  165  115-280    23-198 (524)
  7 2cfq_A Lactose permease; trans  99.8 4.3E-20 1.5E-24  171.2   7.7  226  117-353    20-252 (417)
  8 1pw4_A Glycerol-3-phosphate tr  99.7   1E-16 3.5E-21  149.7  14.4  171  111-281   259-434 (451)
  9 2cfq_A Lactose permease; trans  99.6 6.9E-15 2.4E-19  136.2  14.3  145  138-284   258-403 (417)
 10 3o7q_A L-fucose-proton symport  99.6 3.3E-14 1.1E-18  132.1  15.7  152  119-275   273-427 (438)
 11 4gc0_A D-xylose-proton symport  99.5 1.2E-13 4.2E-18  130.3  14.0  179  109-287   282-469 (491)
 12 4aps_A DI-OR tripeptide H+ sym  99.5 3.1E-13 1.1E-17  127.6  12.6  164  120-284   299-475 (491)
 13 2gfp_A EMRD, multidrug resista  99.3 1.3E-12 4.4E-17  118.9   3.7  153  111-266   206-362 (375)
 14 2xut_A Proton/peptide symporte  99.1 1.8E-10 6.3E-15  109.5   9.4  145  140-284   336-506 (524)
 15 2g9p_A Antimicrobial peptide l  64.9     2.8 9.5E-05   19.9   1.1   14  158-171     2-15  (26)
 16 4dve_A Biotin transporter BIOY  39.9      82  0.0028   24.9   6.6   24  146-169   100-123 (198)
 17 2dw3_A Intrinsic membrane prot  28.8   1E+02  0.0034   20.0   4.3   31  259-289    32-62  (77)
 18 3hd6_A Ammonium transporter RH  20.3   5E+02   0.017   23.8  14.4   30  221-250   335-364 (490)

No 1  
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97  E-value=1.3e-30  Score=244.32  Aligned_cols=265  Identities=15%  Similarity=0.222  Sum_probs=222.8

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHH
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWW  179 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~  179 (371)
                      +.++..+..+++..+..+++...+.+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||++++++.++.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~  102 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence            35677788888888999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh----hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 017461          180 SIATALTPV----AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH  255 (371)
Q Consensus       180 ~i~~~~~~~----~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  255 (371)
                      +++.+++++    ++  +++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.+++|.+++.+.+
T Consensus       103 ~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          103 AAVMLFMGFVPWATS--SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHCHHHHS--SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhccc--cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999    88  999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ccC-chhHHHHHhHHHHHHHHHHhhcccCCCCCCCCCChHHHH-----HHhhhccCCCCcccchhhhhhcChhHHHHHHH
Q 017461          256 RFG-WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDPQLRPAEKK-----LIVSSCASKEPVKTIPWGLILSKPPVWALIVS  329 (371)
Q Consensus       256 ~~g-w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  329 (371)
                      ..| ||+.|++.++++++..++.+++.||++........++.+     ....+.+++...+...++++++++.++...+.
T Consensus       181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (451)
T 1pw4_A          181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA  260 (451)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence            898 999999999988887777777777765543221111100     00000000111111225678899999999999


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhcCCChhhhhhhhhhee
Q 017461          330 HFCHNWGTFILLTWMPTYYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      .++..+..+.+..++|.|+++.+|+++.+++++.+..+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  298 (451)
T 1pw4_A          261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE  298 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            99999999999999999999988999999988776654


No 2  
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97  E-value=7.2e-30  Score=238.37  Aligned_cols=252  Identities=15%  Similarity=0.196  Sum_probs=214.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHH
Q 017461          101 KRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWS  180 (371)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~  180 (371)
                      +++..+..+++..+..+++....++..|.+.+++|++..+.|++.+++.++..++.+++|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            45556667777788888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh---hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHh-cc
Q 017461          181 IATALT---PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLI-HR  256 (371)
Q Consensus       181 i~~~~~---~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-~~  256 (371)
                      ++.+++   .+++  +++.++++|++.|++.+...+...++++|++|+++|++++++.+.+..+|.++++.+++.+. +.
T Consensus       103 ~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  180 (438)
T 3o7q_A          103 LGAALFWPAAEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN  180 (438)
T ss_dssp             HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred             HHHHHHHhccccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999   8888  99999999999999999999999999999999999999999999999999999999999998 65


Q ss_pred             cC-------------------------chhHHHHHhHHHHHHHHHHhhc-ccCCCCCCCCCChHHHHHHhhhccCCCCcc
Q 017461          257 FG-------------------------WPSVFYSFGSLGTVWFTVWLSK-AHSSPAEDPQLRPAEKKLIVSSCASKEPVK  310 (371)
Q Consensus       257 ~g-------------------------w~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (371)
                      .+                         ||+.|++.+++.++..++.++. .||.+.+.++.             ++++..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------------~~~~~~  247 (438)
T 3o7q_A          181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-------------AKQGSF  247 (438)
T ss_dssp             SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-------------SSTTSH
T ss_pred             cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-------------ccccch
Confidence            55                         9999988887776665554443 23322211110             111222


Q ss_pred             cchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhcCCChhhhhhhhhhee
Q 017461          311 TIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTY-YNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~g~s~~~~~~~~~~~~  367 (371)
                      ..++++++|+|.++...+..++.......+..++|.| +++.+|+++.+++.+.+...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  305 (438)
T 3o7q_A          248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM  305 (438)
T ss_dssp             HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence            4567789999999999999999999999999999999 88878999999988776543


No 3  
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96  E-value=1.2e-28  Score=225.61  Aligned_cols=243  Identities=14%  Similarity=0.143  Sum_probs=214.0

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHh
Q 017461          107 VLCFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~  186 (371)
                      .++++..+...+....+.+.+|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            44566667777888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHH
Q 017461          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (371)
Q Consensus       187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~  266 (371)
                      .+++  +++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+++.+.+..|||+.|++.
T Consensus        83 ~~~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  160 (375)
T 2gfp_A           83 VTTS--SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL  160 (375)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHhc--cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence            9999  99999999999999999999999999999999999999999999999999999999999999988999999999


Q ss_pred             hHHHHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHH
Q 017461          267 GSLGTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPT  346 (371)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (371)
                      +++.++..++.++..||++..++++                ++...++++++|+|.++...+..++.......+..++|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (375)
T 2gfp_A          161 LVLCAGVTFSMARWMPETRPVDAPR----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV  224 (375)
T ss_dssp             HHHHHHHHCCCCCSSCCCSTTTCCC----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHHHHHHCcccCCCCccc----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877776666666654432211                111345667889999999999999999999999999999


Q ss_pred             HHHHhcCCChhhhhhhhhhee
Q 017461          347 YYNQVSSFGSKTLSETVQVCT  367 (371)
Q Consensus       347 ~l~~~~g~s~~~~~~~~~~~~  367 (371)
                      |+++.+|+++.+++.+.+..+
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~  245 (375)
T 2gfp_A          225 LMGAVLGLSSMTVSILFILPI  245 (375)
T ss_dssp             SSHHHHHHHHHHHHHHHHTHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHH
Confidence            999988999999888766543


No 4  
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.92  E-value=2.4e-24  Score=204.04  Aligned_cols=167  Identities=16%  Similarity=0.179  Sum_probs=144.4

Q ss_pred             HHHHHHhhhhhhh-hhhhhhhhh-----cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhh-hCCchhHHHHHHHHHHHHH
Q 017461          112 AFLLCNMDRVNMS-IAILPMSAE-----FNWNPATVGLIQSSFFWGYLLTQIAGGIWADT-VGGKAVLGFGVVWWSIATA  184 (371)
Q Consensus       112 ~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~  184 (371)
                      ..+...+..+.+. ...+.+.++     +|++..+.+++.+++.++..++++++|+++|| +|||+++.++.++.+++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~  100 (491)
T 4aps_A           21 TEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHI  100 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            3333333333333 333445555     99999999999999999999999999999999 8999999999999999999


Q ss_pred             HhhhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcc--hHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhH
Q 017461          185 LTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAE--RSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSV  262 (371)
Q Consensus       185 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~  262 (371)
                      ++++++  +++.++++|++.|++.+...+...++++|++|+++  |+.++++++.+.++|..++|.+++.+.+..|||+.
T Consensus       101 ~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~  178 (491)
T 4aps_A          101 VLALPF--GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVA  178 (491)
T ss_dssp             HHHSCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHhh--hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            999999  99999999999999999999999999999999988  77888889999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHhhc
Q 017461          263 FYSFGSLGTVWFTVWLSK  280 (371)
Q Consensus       263 f~~~~~~~~~~~~~~~~~  280 (371)
                      |++.+++.++..++.++.
T Consensus       179 f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          179 FSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999887776665555444


No 5  
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.91  E-value=5.6e-24  Score=201.46  Aligned_cols=184  Identities=18%  Similarity=0.258  Sum_probs=155.7

Q ss_pred             ChhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCC--------CcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchh
Q 017461          100 PKRWFIVVLCFSAFLLCNMDRVNMSIAILPMSAEFNW--------NPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAV  171 (371)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  171 (371)
                      ++.+.+.++..++.++.++|..+++..+|.+.++++.        +..+.|++.+++.+|..++++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            3455566666778889999999999999999888753        23467899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh------------------hhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHH
Q 017461          172 LGFGVVWWSIATALTPV------------------AAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLA  233 (371)
Q Consensus       172 ~~~~~~~~~i~~~~~~~------------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~  233 (371)
                      ++++.+++.++.+++++                  ++  |++.++++|+++|+|.|+..+....+++|+.|+++|++..+
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~--~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~  165 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG--YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS  165 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence            99999999999999984                  67  99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHhcc--------cCchhHHHHHhHHHHHHHHHHhhcccCCCC
Q 017461          234 LVYSGMYLGSVTGLAFSPFLIHR--------FGWPSVFYSFGSLGTVWFTVWLSKAHSSPA  286 (371)
Q Consensus       234 ~~~~~~~~g~~~g~~~~~~l~~~--------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
                      +.+.+..+|.++++.++..+...        .+||+.+.+..+..++. ++..++.||+|+
T Consensus       166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peSp~  225 (491)
T 4gc0_A          166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPESPR  225 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCCHH
T ss_pred             hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCChH
Confidence            99999999999999888877653        24676666655555444 444556788765


No 6  
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.83  E-value=8.3e-20  Score=174.26  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=141.7

Q ss_pred             HHHhhhhhhhhhh-hhhhhhcC------CCcchHHHHHHHHHHHHHHHHHHHHHhhhhh-CCchhHHHHHHHHHHHHHHh
Q 017461          115 LCNMDRVNMSIAI-LPMSAEFN------WNPATVGLIQSSFFWGYLLTQIAGGIWADTV-GGKAVLGFGVVWWSIATALT  186 (371)
Q Consensus       115 ~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~  186 (371)
                      +..+..+.....+ +.+.+++|      ++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.+++
T Consensus        23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~  102 (524)
T 2xut_A           23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL  102 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            3333333344444 44678899      9999999999999999999999999999999 99999999999999999998


Q ss_pred             hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHH---HHHHHHHHHHHHHHhHHHHhcccCchhHH
Q 017461          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLAL---VYSGMYLGSVTGLAFSPFLIHRFGWPSVF  263 (371)
Q Consensus       187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~g~~~~~~l~~~~gw~~~f  263 (371)
                      ++++. +++.++++|++.|++.+...+...+++.|++|+++|+++.++   ...+.++|.+++|.+++.+.+..||++.|
T Consensus       103 ~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f  181 (524)
T 2xut_A          103 AIFEH-SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF  181 (524)
T ss_dssp             HHTSS-CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred             HHhcc-cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            88752 688999999999999999999999999999999999876666   89999999999999999999989999999


Q ss_pred             HHHhHHHHHHHHHHhhc
Q 017461          264 YSFGSLGTVWFTVWLSK  280 (371)
Q Consensus       264 ~~~~~~~~~~~~~~~~~  280 (371)
                      ++.+++.++..++.++.
T Consensus       182 ~~~~~~~~~~~~~~~~~  198 (524)
T 2xut_A          182 GIPGVLMFVATVFFWLG  198 (524)
T ss_dssp             HHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99888877665555443


No 7  
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.80  E-value=4.3e-20  Score=171.24  Aligned_cols=226  Identities=11%  Similarity=0.035  Sum_probs=147.0

Q ss_pred             Hhhhhhhhhhhhh-hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHH---HHhhhhhcc
Q 017461          117 NMDRVNMSIAILP-MSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIAT---ALTPVAAKL  192 (371)
Q Consensus       117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~  192 (371)
                      ........+.+|. +++++|++..+.|++.+++.++..++++++|+++||+|||++++++.++++++.   ..+.++.  
T Consensus        20 ~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~--   97 (417)
T 2cfq_A           20 FFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP--   97 (417)
T ss_dssp             HHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3334445556666 566799999999999999999999999999999999999999999888775532   2222322  


Q ss_pred             Ch-hHHHHHHHHHHhhhhchhhhHHHHHhcccCC--cchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHH
Q 017461          193 GL-PFLLVVRVFMGIGEGVAMPAMNNILSKWVPV--AERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSL  269 (371)
Q Consensus       193 ~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~  269 (371)
                      .. ..++.++++.|++.+...+.....+.++.++  ++++...+.......+|..++|.+++++.+ .+|++.|++.+++
T Consensus        98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~  176 (417)
T 2cfq_A           98 LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGC  176 (417)
T ss_dssp             HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHH
Confidence            11 1234455666665554444444444444432  456777788888889999999999999987 5899999987776


Q ss_pred             HHHHHHHHhhcccCCCCCCCCCChHHHHHHhhhccCCCCcccchhhhhhcChhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017461          270 GTVWFTVWLSKAHSSPAEDPQLRPAEKKLIVSSCASKEPVKTIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYN  349 (371)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  349 (371)
                      .++..++.++..||+++..++.   ++     +..++++.....++++++++.++...+..++....+..+..++|.|+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (417)
T 2cfq_A          177 ALILAVLLFFAKTDAPSSATVA---NA-----VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT  248 (417)
T ss_dssp             TTTHHHHSCSSCCCCSCSSCSS---SS-----SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccccccc---cc-----cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544444333333332111000   00     000111111234567889999987777766666666667777898887


Q ss_pred             HhcC
Q 017461          350 QVSS  353 (371)
Q Consensus       350 ~~~g  353 (371)
                      +.++
T Consensus       249 ~~~~  252 (417)
T 2cfq_A          249 SFFA  252 (417)
T ss_dssp             HTSS
T ss_pred             HHHh
Confidence            7544


No 8  
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.71  E-value=1e-16  Score=149.67  Aligned_cols=171  Identities=13%  Similarity=0.072  Sum_probs=144.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhh-cCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh--CCchhHHHHHHHHH-HHHHHh
Q 017461          111 SAFLLCNMDRVNMSIAILPMSAE-FNWNPATVGLIQSSFFWGYLLTQIAGGIWADTV--GGKAVLGFGVVWWS-IATALT  186 (371)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-i~~~~~  186 (371)
                      +..++.......+....|.+.++ +|.+..+.+++.+...++..++.++.|++.||+  |||+.+.++.++.. ++.++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (451)
T 1pw4_A          259 IANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY  338 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            33344444445566667776555 899999999999999999999999999999999  99999988887776 777777


Q ss_pred             hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHH-HHHHHHHhHHHHhcccCchhHHHH
Q 017461          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYL-GSVTGLAFSPFLIHRFGWPSVFYS  265 (371)
Q Consensus       187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-g~~~g~~~~~~l~~~~gw~~~f~~  265 (371)
                      .+.+..+.+.+++..++.|++.+...+....++.|.+|+++|++++|+......+ |..++|.+.+.+.+..||+..|++
T Consensus       339 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  418 (451)
T 1pw4_A          339 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  418 (451)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            7764226788888899999998888888899999999999999999999999999 999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhhcc
Q 017461          266 FGSLGTVWFTVWLSKA  281 (371)
Q Consensus       266 ~~~~~~~~~~~~~~~~  281 (371)
                      .+++.++..++.++..
T Consensus       419 ~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          419 MIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888877766665543


No 9  
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.61  E-value=6.9e-15  Score=136.17  Aligned_cols=145  Identities=8%  Similarity=0.021  Sum_probs=125.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhHHHHHHHHHHhhhhchhhhHHH
Q 017461          138 PATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPFLLVVRVFMGIGEGVAMPAMNN  217 (371)
Q Consensus       138 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  217 (371)
                      ....+++.++..++..++.++.|+++||+|||+++.++.++.+++.++.++.+  +.+.+++..++.+++.+...+....
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~  335 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFLLVGCFK  335 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45568888888889999999999999999999999999998888888887777  8888888888888887777777889


Q ss_pred             HHhcccCCcchHHHHHH-HHHHHHHHHHHHHHhHHHHhcccCchhHHHHHhHHHHHHHHHHhhcccCC
Q 017461          218 ILSKWVPVAERSRSLAL-VYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSFGSLGTVWFTVWLSKAHSS  284 (371)
Q Consensus       218 ~i~~~~~~~~r~~~~~~-~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~  284 (371)
                      +++|.+|++.|+.+.++ ++....+|..++|.++|.+.+..|+...|.+.+++.++..++.++..+++
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            99999999999999998 48888899999999999999988899999998888887777666655543


No 10 
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.57  E-value=3.3e-14  Score=132.10  Aligned_cols=152  Identities=9%  Similarity=0.005  Sum_probs=125.9

Q ss_pred             hhhhhhhhhhhh-hh-hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhhhhccChhH
Q 017461          119 DRVNMSIAILPM-SA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPVAAKLGLPF  196 (371)
Q Consensus       119 ~~~~~~~~~~~~-~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  196 (371)
                      .........|.+ .+ .+|.+..+.+++.+.+.++..++.++.|+++||+|||+++.++.++.+++.++..+.+  +.+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  350 (438)
T 3o7q_A          273 AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHVG  350 (438)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--HHHH
T ss_pred             HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--CcHH
Confidence            334444555555 44 4599999999999999999999999999999999999999999999999998888887  6655


Q ss_pred             HHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccC-chhHHHHHhHHHHHHHH
Q 017461          197 LLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFG-WPSVFYSFGSLGTVWFT  275 (371)
Q Consensus       197 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-w~~~f~~~~~~~~~~~~  275 (371)
                      ++ .-++.|++.+...+...++..|.+|++ ++.+.++.. ...+|..++|.+.|.+.+..| ++..|++.+++.++..+
T Consensus       351 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          351 LI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            44 448899999999999999999999755 888888877 566999999999999999999 99999876655444433


No 11 
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.51  E-value=1.2e-13  Score=130.35  Aligned_cols=179  Identities=13%  Similarity=0.013  Sum_probs=132.7

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHHHHHHHHHhhh
Q 017461          109 CFSAFLLCNMDRVNMSIAILPMSAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVWWSIATALTPV  188 (371)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~  188 (371)
                      +....+........+....+.+.+..+.+............+...++.++.+.+.||+|||+.++.+....+++.+..+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~  361 (491)
T 4gc0_A          282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT  361 (491)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence            33334444444455566677888888888888888888888999999999999999999999999998888887766554


Q ss_pred             hhc--cChhHHHHHHHHHHhh-hhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhc------ccCc
Q 017461          189 AAK--LGLPFLLVVRVFMGIG-EGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIH------RFGW  259 (371)
Q Consensus       189 ~~~--~~~~~l~~~r~l~G~~-~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------~~gw  259 (371)
                      ...  ...+..++.-++...+ .....+..+.+.+|.+|.+.|++++|+......+|..+++.+...+.+      ..++
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~  441 (491)
T 4gc0_A          362 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHN  441 (491)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTT
T ss_pred             HHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            321  1222222222222222 223456778899999999999999999999999999998887765543      3567


Q ss_pred             hhHHHHHhHHHHHHHHHHhhcccCCCCC
Q 017461          260 PSVFYSFGSLGTVWFTVWLSKAHSSPAE  287 (371)
Q Consensus       260 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~  287 (371)
                      .+.|++.++++++..++.+++.||++.+
T Consensus       442 ~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          442 GFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence            7889999999999999888999987554


No 12 
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.46  E-value=3.1e-13  Score=127.57  Aligned_cols=164  Identities=14%  Similarity=0.064  Sum_probs=128.4

Q ss_pred             hhhhhhhhhhh-hhhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHH-----HHHHHHHHHHHHhhhhh---
Q 017461          120 RVNMSIAILPM-SAEFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLG-----FGVVWWSIATALTPVAA---  190 (371)
Q Consensus       120 ~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~~---  190 (371)
                      .......++.+ .+.++.+....+++.+...++..++.++.|++.||+|||+...     ++.++.+++.++..+..   
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (491)
T 4aps_A          299 EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY  378 (491)
T ss_dssp             HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC
T ss_pred             HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344445554 4456777678888889999999999999999999999987665     77777777777666632   


Q ss_pred             ----ccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHH
Q 017461          191 ----KLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (371)
Q Consensus       191 ----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~  266 (371)
                          ..+.+.+++..++.|++.+...+....++.|.+|+++|+.+.|+......+|..+++.+.+.+.+ .++.+.|++.
T Consensus       379 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~  457 (491)
T 4aps_A          379 GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYF  457 (491)
T ss_dssp             CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHT
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence                12677888889999999999899999999999999999999999999999999999999888776 4677888888


Q ss_pred             hHHHHHHHHHHhhcccCC
Q 017461          267 GSLGTVWFTVWLSKAHSS  284 (371)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~  284 (371)
                      ++++++..++.++..++.
T Consensus       458 ~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          458 GLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             HHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888887777766665543


No 13 
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.27  E-value=1.3e-12  Score=118.92  Aligned_cols=153  Identities=12%  Similarity=-0.039  Sum_probs=116.7

Q ss_pred             HHHHHHHhhhhhhhhhhhhhhh-hcCCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhCCchhHHHHHHH-HHHHHH--Hh
Q 017461          111 SAFLLCNMDRVNMSIAILPMSA-EFNWNPATVGLIQSSFFWGYLLTQIAGGIWADTVGGKAVLGFGVVW-WSIATA--LT  186 (371)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~i~~~--~~  186 (371)
                      +..+........+....|.+.+ .+|.+..+.+++.+...++..++.++.+++.||+|++  +..+..+ ..++..  ..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~  283 (375)
T 2gfp_A          206 LMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIP  283 (375)
T ss_dssp             HHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence            3334444444555666676544 4899999999999999999999999999999999883  3333333 222222  22


Q ss_pred             hhhhccChhHHHHHHHHHHhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhcccCchhHHHHH
Q 017461          187 PVAAKLGLPFLLVVRVFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRFGWPSVFYSF  266 (371)
Q Consensus       187 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~gw~~~f~~~  266 (371)
                      ......+.+.+++..++.|++.+...+...+++.|.+| ++|+++.|+......+|..++|.+.+.+.+..+|+..+++.
T Consensus       284 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          284 DWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             hhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            22111157778888899999999999999999999997 89999999999999999999999999998877787777664


No 14 
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.10  E-value=1.8e-10  Score=109.46  Aligned_cols=145  Identities=12%  Similarity=0.066  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh----hhhCCc----hhHHHHHHHHHHHHHHhhhhh-------ccChhHHHHHHHHH
Q 017461          140 TVGLIQSSFFWGYLLTQIAGGIWA----DTVGGK----AVLGFGVVWWSIATALTPVAA-------KLGLPFLLVVRVFM  204 (371)
Q Consensus       140 ~~~~~~s~~~~~~~~~~~~~g~l~----dr~Grr----~~~~~~~~~~~i~~~~~~~~~-------~~~~~~l~~~r~l~  204 (371)
                      ..+++.....++..++.++.+++.    +|.|+|    +.+.++.++.+++.++.++..       ..+.+.+++..++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            466666666677777787877765    555432    456778888888887776642       12677788889999


Q ss_pred             HhhhhchhhhHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhHHHHhccc--Cc---------hhHHHHHhHHHHHH
Q 017461          205 GIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHRF--GW---------PSVFYSFGSLGTVW  273 (371)
Q Consensus       205 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--gw---------~~~f~~~~~~~~~~  273 (371)
                      |++.+...+....++.|.+|+++||+++|+......+|..++|.+.+.+.+..  +|         +..|++.+++.++.
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  495 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILA  495 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987732  23         33477777777776


Q ss_pred             HHHHhhcccCC
Q 017461          274 FTVWLSKAHSS  284 (371)
Q Consensus       274 ~~~~~~~~~~~  284 (371)
                      .++.+++.++.
T Consensus       496 ~~~~~~~~~~~  506 (524)
T 2xut_A          496 AIVFALYARSY  506 (524)
T ss_dssp             HHHHC------
T ss_pred             HHHHHHHHHHh
Confidence            66665554443


No 15 
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=64.94  E-value=2.8  Score=19.94  Aligned_cols=14  Identities=29%  Similarity=0.278  Sum_probs=11.5

Q ss_pred             HHHHhhhhhCCchh
Q 017461          158 AGGIWADTVGGKAV  171 (371)
Q Consensus       158 ~~g~l~dr~Grr~~  171 (371)
                      ++|.+..+||||.+
T Consensus         2 lfgklikkfgrkai   15 (26)
T 2g9p_A            2 LFGKLIKKFGRKAI   15 (26)
T ss_dssp             HHHHHHHHHTSHHH
T ss_pred             cHHHHHHHHhHHHH
Confidence            46899999999854


No 16 
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=39.89  E-value=82  Score=24.90  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhCCc
Q 017461          146 SSFFWGYLLTQIAGGIWADTVGGK  169 (371)
Q Consensus       146 s~~~~~~~~~~~~~g~l~dr~Grr  169 (371)
                      .-|.+|+.++..+.|++.+|..++
T Consensus       100 gGYLiGF~~aA~v~G~l~~~~~~~  123 (198)
T 4dve_A          100 GGYRIAWLFTPFLIGFFLKKLKIT  123 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred             hHHHHHHHHHHHHHHHHHHHcccc
Confidence            457788899999999999997643


No 17 
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=28.81  E-value=1e+02  Score=19.97  Aligned_cols=31  Identities=16%  Similarity=0.118  Sum_probs=15.1

Q ss_pred             chhHHHHHhHHHHHHHHHHhhcccCCCCCCC
Q 017461          259 WPSVFYSFGSLGTVWFTVWLSKAHSSPAEDP  289 (371)
Q Consensus       259 w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (371)
                      |-.++.+...+.++.+-++-..+||..+..+
T Consensus        32 ~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP   62 (77)
T 2dw3_A           32 WAGGVFFGTLLLIGFFRVVGRMLPIQENQAP   62 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence            4444444444444444444556677655443


No 18 
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=20.25  E-value=5e+02  Score=23.75  Aligned_cols=30  Identities=10%  Similarity=0.072  Sum_probs=16.6

Q ss_pred             cccCCcchHHHHHHHHHHHHHHHHHHHHhH
Q 017461          221 KWVPVAERSRSLALVYSGMYLGSVTGLAFS  250 (371)
Q Consensus       221 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  250 (371)
                      +...-+.---+.++...+..+|.++..+++
T Consensus       335 ~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa  364 (490)
T 3hd6_A          335 SRLHIQDTCGINNLHGIPGIIGGIVGAVTA  364 (490)
T ss_dssp             HHHCCCCTTCHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHCCCCccccchHHhhHHHHHHHHHHHHHh
Confidence            334334434466666666666666655443


Done!