Query 017464
Match_columns 371
No_of_seqs 147 out of 425
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 08:48:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 99.9 4.5E-23 9.8E-28 204.3 8.2 63 61-124 231-293 (526)
2 TIGR01557 myb_SHAQKYF myb-like 99.9 5.7E-22 1.2E-26 150.1 6.4 56 65-120 1-56 (57)
3 PF00249 Myb_DNA-binding: Myb- 98.0 9.8E-06 2.1E-10 58.0 5.3 48 67-118 1-48 (48)
4 smart00717 SANT SANT SWI3, AD 94.2 0.18 3.8E-06 33.7 5.5 44 68-117 2-46 (49)
5 cd00167 SANT 'SWI3, ADA2, N-Co 93.9 0.2 4.2E-06 33.2 5.3 44 69-117 1-44 (45)
6 smart00426 TEA TEA domain. 93.8 0.064 1.4E-06 43.2 3.2 46 68-116 4-67 (68)
7 PF12776 Myb_DNA-bind_3: Myb/S 81.0 2.1 4.4E-05 33.6 3.5 52 69-120 1-64 (96)
8 PF01285 TEA: TEA/ATTS domain 79.5 1.8 3.8E-05 44.9 3.4 54 64-117 46-112 (431)
9 PF13921 Myb_DNA-bind_6: Myb-l 78.6 6.2 0.00013 28.9 5.2 41 70-116 1-41 (60)
10 smart00501 BRIGHT BRIGHT, ARID 71.5 4.8 0.0001 32.4 3.3 46 72-118 32-84 (93)
11 PLN03212 Transcription repress 60.6 17 0.00036 35.9 5.2 50 64-117 22-71 (249)
12 KOG3841 TEF-1 and related tran 59.2 7.4 0.00016 40.7 2.7 58 65-122 74-146 (455)
13 PLN03091 hypothetical protein; 51.8 25 0.00055 37.3 5.1 36 63-101 10-45 (459)
14 KOG0457 Histone acetyltransfer 50.2 26 0.00055 37.1 4.8 49 66-120 71-120 (438)
15 KOG0724 Zuotin and related mol 42.8 8.3 0.00018 37.3 0.1 63 56-124 42-104 (335)
16 PLN03091 hypothetical protein; 42.0 66 0.0014 34.3 6.4 49 65-119 65-117 (459)
17 PLN03212 Transcription repress 36.6 77 0.0017 31.4 5.5 51 62-118 73-127 (249)
18 PF07384 DUF1497: Protein of u 27.2 59 0.0013 25.6 2.5 22 68-89 36-57 (59)
19 PF13837 Myb_DNA-bind_4: Myb/S 26.7 59 0.0013 25.0 2.4 56 67-122 1-72 (90)
20 cd08783 Death_MALT1 Death doma 25.6 1E+02 0.0022 26.8 3.9 48 66-117 36-84 (97)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.88 E-value=4.5e-23 Score=204.28 Aligned_cols=63 Identities=43% Similarity=0.725 Sum_probs=59.0
Q ss_pred ccCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcccCC
Q 017464 61 VRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDD 124 (371)
Q Consensus 61 ~r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~~ 124 (371)
...||+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||++++..
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l 293 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHL 293 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence 34689999999999999999999999 7999999999999999999999999999999987644
No 2
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.86 E-value=5.7e-22 Score=150.12 Aligned_cols=56 Identities=55% Similarity=0.901 Sum_probs=54.2
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~ 120 (371)
|+|++||+|+|.+||+||+.||+.+.|+||.|+++|++++||+.||+|||||||++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 68999999999999999999998789999999999999999999999999999986
No 3
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.05 E-value=9.8e-06 Score=57.97 Aligned_cols=48 Identities=25% Similarity=0.332 Sum_probs=41.8
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464 67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR 118 (371)
|..||++.+..|++||.++|.. .++.|.+.|+ .+.|..+|++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 5689999999999999999932 5899999999 7899999999999985
No 4
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=94.20 E-value=0.18 Score=33.74 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=37.7
Q ss_pred ccCCHHHHHHHHHHHHHhC-CCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464 68 LRWTPDLHLRFVNAVEKLG-GQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117 (371)
Q Consensus 68 lrWT~ELH~rFV~AV~~LG-G~ekAtPK~ILelM~V~GLT~~~VkSHLQKY 117 (371)
-.||++-...|+.+|.++| + .+..|...|+ +-|..+|+.+...+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~----~w~~Ia~~~~--~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKN----NWEKIAKELP--GRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcC----CHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 4699999999999999999 4 3799999986 79999999876654
No 5
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=93.93 E-value=0.2 Score=33.15 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464 69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117 (371)
Q Consensus 69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY 117 (371)
.||++-+..|+.++..+|- ..++.|.+.|+- -|..+|+.|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~~--rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELPG--RTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcCC--CCHHHHHHHHHHh
Confidence 4999999999999999992 348999999854 8999999887654
No 6
>smart00426 TEA TEA domain.
Probab=93.82 E-value=0.064 Score=43.24 Aligned_cols=46 Identities=24% Similarity=0.340 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCchh-HHH-----------------hhcCCCCCCHHHHHHhhhh
Q 017464 68 LRWTPDLHLRFVNAVEKLGGQERATPK-LVL-----------------QMMDIKGLSIAHVKSHLQM 116 (371)
Q Consensus 68 lrWT~ELH~rFV~AV~~LGG~ekAtPK-~IL-----------------elM~V~GLT~~~VkSHLQK 116 (371)
-+|.++|-..|++|+..+- ...+-| ++. ..-| .-.|+.||.||+|.
T Consensus 4 ~vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tG-k~Rt~KQVsShIQv 67 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQV 67 (68)
T ss_pred CcCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhC-Cccchhhhcchhee
Confidence 3799999999999999885 222222 222 1111 23689999999995
No 7
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=81.01 E-value=2.1 Score=33.64 Aligned_cols=52 Identities=10% Similarity=0.275 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHHHh---CCC------CCCchhHHHhhcCC---CCCCHHHHHHhhhhhhhc
Q 017464 69 RWTPDLHLRFVNAVEKL---GGQ------ERATPKLVLQMMDI---KGLSIAHVKSHLQMYRSK 120 (371)
Q Consensus 69 rWT~ELH~rFV~AV~~L---GG~------ekAtPK~ILelM~V---~GLT~~~VkSHLQKYRl~ 120 (371)
.||++..+.||+++-.. |.. .+.....|++.|+- -.+|..||++|++..|..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 59999999999988443 332 22334557776665 347899999999877654
No 8
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=79.50 E-value=1.8 Score=44.88 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=29.8
Q ss_pred CCCCccCCHHHHHHHHHHHHHhC--CCCCC--------chhHHHhhcCC---CCCCHHHHHHhhhhh
Q 017464 64 KMPRLRWTPDLHLRFVNAVEKLG--GQERA--------TPKLVLQMMDI---KGLSIAHVKSHLQMY 117 (371)
Q Consensus 64 kKpRlrWT~ELH~rFV~AV~~LG--G~ekA--------tPK~ILelM~V---~GLT~~~VkSHLQKY 117 (371)
+...-+|++++...|++|+..+- |.-|- .=+.|.+.... .-.|+.||.||+|..
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 46788999999999999998773 12110 00112222111 347999999999999
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=78.64 E-value=6.2 Score=28.85 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhh
Q 017464 70 WTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQM 116 (371)
Q Consensus 70 WT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQK 116 (371)
||++--...+.+|...|. .++.|.+.|+ ..|..+|+.+...
T Consensus 1 WT~eEd~~L~~~~~~~g~----~W~~Ia~~l~--~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN----DWKKIAEHLG--NRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-----HHHHHHHST--TS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc----CHHHHHHHHC--cCCHHHHHHHHHH
Confidence 999999999999999984 3999999996 5899999988777
No 10
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=71.50 E-value=4.8 Score=32.36 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhHHHhhcCCCCC---CHHHHHHhhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQER----ATPKLVLQMMDIKGL---SIAHVKSHLQMYR 118 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ek----AtPK~ILelM~V~GL---T~~~VkSHLQKYR 118 (371)
-+|++.|+ +|..+||.+. ..|+.|.+.|+++.- ...++++|-+||=
T Consensus 32 vdL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L 84 (93)
T smart00501 32 LDLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYL 84 (93)
T ss_pred CcHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHh
Confidence 47999998 5899999753 469999999999752 2456777766663
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=60.57 E-value=17 Score=35.87 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=39.9
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464 64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117 (371)
Q Consensus 64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY 117 (371)
...|-.||+|.-.+-+++|+++|. ..++.|.+.|+ ++.|..|++-.-..|
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG~---~nW~~IAk~~g-~gRT~KQCReRW~N~ 71 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEGE---GRWRSLPKRAG-LLRCGKSCRLRWMNY 71 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCc---ccHHHHHHhhh-cCCCcchHHHHHHHh
Confidence 456778999999999999999993 34899988876 578888888664444
No 12
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=59.15 E-value=7.4 Score=40.70 Aligned_cols=58 Identities=22% Similarity=0.454 Sum_probs=38.5
Q ss_pred CCCccCCHHHHHHHHHHHHHhC--CCCC----------CchhHHHhhcCC---CCCCHHHHHHhhhhhhhccc
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLG--GQER----------ATPKLVLQMMDI---KGLSIAHVKSHLQMYRSKKI 122 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LG--G~ek----------AtPK~ILelM~V---~GLT~~~VkSHLQKYRl~k~ 122 (371)
-.--+|+++.-+.|.+|+..+- |.-| -.-..|...... +-.|+.||.||+|..-..+.
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~ 146 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKL 146 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 4667899999999999998763 1110 001123333332 55899999999998866544
No 13
>PLN03091 hypothetical protein; Provisional
Probab=51.79 E-value=25 Score=37.28 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=29.7
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcC
Q 017464 63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMD 101 (371)
Q Consensus 63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~ 101 (371)
.+..|..||+|.-.+.+++|.++|. ..++.|...|+
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~---~nWs~IAk~~g 45 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGH---GCWSSVPKQAG 45 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCc---CCHHHHhhhhc
Confidence 3566778999999999999999993 35888888776
No 14
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=50.21 E-value=26 Score=37.07 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=42.9
Q ss_pred CCccCCHHHHHHHHHHHHHhC-CCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464 66 PRLRWTPDLHLRFVNAVEKLG-GQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120 (371)
Q Consensus 66 pRlrWT~ELH~rFV~AV~~LG-G~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~ 120 (371)
--.-||.+--..||+|++.+| |- |.-|.+.||. -|.++++.|--|+...
T Consensus 71 ~~~~WtadEEilLLea~~t~G~GN----W~dIA~hIGt--Ktkeeck~hy~k~fv~ 120 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFGN----WQDIADHIGT--KTKEECKEHYLKHFVN 120 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCc----HHHHHHHHcc--cchHHHHHHHHHHHhc
Confidence 456799999999999999999 54 8999999995 8999999998887753
No 15
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=42.84 E-value=8.3 Score=37.31 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=48.2
Q ss_pred CccccccCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcccCC
Q 017464 56 PVRPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDD 124 (371)
Q Consensus 56 ~vr~y~r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~~ 124 (371)
..++|.--+...-+||++.|.+|.+||-.. +..|..|-+..+. .+..++.+|-|+|.......
T Consensus 42 i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~----~~~~~~~~~~~~~--~~~v~~~~~~~~~~p~~~~~ 104 (335)
T KOG0724|consen 42 IEKALAILDDDEPRRTPDSWDKFAEALPLE----KRLEDKIEEYIGL--VFDVNIRESGQKPFPKYGKS 104 (335)
T ss_pred HHHHHHHHhccccccchhhhhHHHhcCccc----cccchhHHhhhhh--HHHHhhhhccCCCccccCcc
Confidence 355666555556679999999998887543 4558999888888 88888999999998776544
No 16
>PLN03091 hypothetical protein; Provisional
Probab=42.01 E-value=66 Score=34.32 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=40.1
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHH----Hhhhhhhh
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVK----SHLQMYRS 119 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~Vk----SHLQKYRl 119 (371)
-.+-.||+|--.+.++.+..+|. .+..|...| +|.|-.+|| ++|+|+..
T Consensus 65 IkKgpWT~EED~lLLeL~k~~Gn----KWskIAk~L--PGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 65 LKRGTFSQQEENLIIELHAVLGN----RWSQIAAQL--PGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCc----chHHHHHhc--CCCCHHHHHHHHHHHHHHHHH
Confidence 34557999999999999999993 489999886 899999998 45666644
No 17
>PLN03212 Transcription repressor MYB5; Provisional
Probab=36.57 E-value=77 Score=31.38 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=39.3
Q ss_pred cCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHH----Hhhhhhh
Q 017464 62 RSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVK----SHLQMYR 118 (371)
Q Consensus 62 r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~Vk----SHLQKYR 118 (371)
+..-.+-.||.|.-..-++++..+|.. +..|...| +|.|-.+|| +||.|..
T Consensus 73 ~P~I~kgpWT~EED~lLlel~~~~GnK----Ws~IAk~L--pGRTDnqIKNRWns~LrK~l 127 (249)
T PLN03212 73 RPSVKRGGITSDEEDLILRLHRLLGNR----WSLIAGRI--PGRTDNEIKNYWNTHLRKKL 127 (249)
T ss_pred chhcccCCCChHHHHHHHHHHHhcccc----HHHHHhhc--CCCCHHHHHHHHHHHHhHHH
Confidence 334455689999988899999999943 78898876 899999998 4555543
No 18
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=27.17 E-value=59 Score=25.64 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=19.2
Q ss_pred ccCCHHHHHHHHHHHHHhCCCC
Q 017464 68 LRWTPDLHLRFVNAVEKLGGQE 89 (371)
Q Consensus 68 lrWT~ELH~rFV~AV~~LGG~e 89 (371)
-.+..|+|..|-+-|++|||.+
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 3578999999999999999864
No 19
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=26.65 E-value=59 Score=25.04 Aligned_cols=56 Identities=18% Similarity=0.338 Sum_probs=33.6
Q ss_pred CccCCHHHHHHHHHHHHH------h--CCCCC--CchhHHHhhcCCCCC--CHHHHHHhh----hhhhhccc
Q 017464 67 RLRWTPDLHLRFVNAVEK------L--GGQER--ATPKLVLQMMDIKGL--SIAHVKSHL----QMYRSKKI 122 (371)
Q Consensus 67 RlrWT~ELH~rFV~AV~~------L--GG~ek--AtPK~ILelM~V~GL--T~~~VkSHL----QKYRl~k~ 122 (371)
|-.||++--..|++++.. + |+..+ .+.+.|.+.|..-|. |..|++... ++||..+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~ 72 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKD 72 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999877 2 12222 267888887766555 888877554 45555443
No 20
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=25.65 E-value=1e+02 Score=26.78 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=40.5
Q ss_pred CCccCCH-HHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464 66 PRLRWTP-DLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117 (371)
Q Consensus 66 pRlrWT~-ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY 117 (371)
+|++-++ ||+++-+..++.-|-+ -+..|+.|++.|-|..+.-.-||.-
T Consensus 36 ~~fr~S~~el~~cslkvl~p~gSP----sk~LL~~~~~rg~Tv~~Ll~~L~~M 84 (97)
T cd08783 36 GRFRLSCLDLEQCSLKVLEPEGSP----SRSLLKLLGERGCTVTELSEFLQAM 84 (97)
T ss_pred CccccCHHHHHHHHHHHhcCCCCc----hHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4888888 9999999988887744 5789999999999999998888763
Done!