Query 017464
Match_columns 371
No_of_seqs 147 out of 425
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 14:51:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 3.1E-28 1E-32 188.0 6.6 59 63-122 3-61 (64)
2 2yum_A ZZZ3 protein, zinc fing 97.1 0.00091 3.1E-08 50.8 6.3 55 66-123 7-64 (75)
3 2yus_A SWI/SNF-related matrix- 97.0 0.0013 4.5E-08 51.6 6.6 49 65-119 16-64 (79)
4 2cu7_A KIAA1915 protein; nucle 96.9 0.002 7E-08 48.8 6.2 53 65-123 7-59 (72)
5 1x41_A Transcriptional adaptor 96.5 0.0066 2.3E-07 44.6 6.4 49 66-119 7-55 (60)
6 2cqq_A RSGI RUH-037, DNAJ homo 96.4 0.0087 3E-07 46.4 7.1 59 66-127 7-65 (72)
7 2iw5_B Protein corest, REST co 96.1 0.0086 2.9E-07 56.2 6.6 53 64-122 130-182 (235)
8 2elk_A SPCC24B10.08C protein; 96.1 0.013 4.5E-07 42.9 6.0 48 68-119 10-57 (58)
9 1ity_A TRF1; helix-turn-helix, 95.9 0.022 7.5E-07 42.7 6.6 54 63-119 6-59 (69)
10 2xag_B REST corepressor 1; ami 95.8 0.013 4.6E-07 59.5 6.9 53 64-122 377-429 (482)
11 2cqr_A RSGI RUH-043, DNAJ homo 95.4 0.024 8.4E-07 44.1 5.6 53 65-119 16-68 (73)
12 2d9a_A B-MYB, MYB-related prot 95.2 0.053 1.8E-06 39.3 6.4 51 64-119 5-55 (60)
13 1guu_A C-MYB, MYB proto-oncoge 95.1 0.049 1.7E-06 38.4 5.8 46 67-117 3-48 (52)
14 1gvd_A MYB proto-oncogene prot 94.8 0.066 2.2E-06 37.8 5.8 47 67-118 3-49 (52)
15 1w0t_A Telomeric repeat bindin 94.7 0.087 3E-06 37.5 6.3 48 67-117 2-49 (53)
16 3sjm_A Telomeric repeat-bindin 94.6 0.078 2.7E-06 39.8 6.2 48 65-115 9-56 (64)
17 2din_A Cell division cycle 5-l 94.1 0.12 4.1E-06 38.2 6.1 51 63-120 5-55 (66)
18 2hzd_A Transcriptional enhance 93.7 0.053 1.8E-06 43.8 3.8 58 64-124 3-78 (82)
19 2dim_A Cell division cycle 5-l 93.6 0.17 5.7E-06 37.8 6.2 49 65-118 7-55 (70)
20 2eqr_A N-COR1, N-COR, nuclear 93.5 0.22 7.5E-06 36.7 6.7 44 64-113 9-52 (61)
21 2cjj_A Radialis; plant develop 92.7 0.18 6.2E-06 40.9 5.5 52 67-120 8-59 (93)
22 2aje_A Telomere repeat-binding 92.4 0.37 1.3E-05 39.9 7.2 54 62-118 8-63 (105)
23 1gv2_A C-MYB, MYB proto-oncoge 92.0 0.36 1.2E-05 38.1 6.4 47 65-117 54-100 (105)
24 2yqk_A Arginine-glutamic acid 91.5 0.76 2.6E-05 34.2 7.4 45 64-113 6-50 (63)
25 2llk_A Cyclin-D-binding MYB-li 91.4 0.52 1.8E-05 36.6 6.5 51 58-115 14-64 (73)
26 1gv2_A C-MYB, MYB proto-oncoge 91.2 0.39 1.3E-05 37.8 5.8 46 67-117 4-49 (105)
27 2k9n_A MYB24; R2R3 domain, DNA 90.4 0.5 1.7E-05 37.7 5.8 50 65-120 51-100 (107)
28 3osg_A MYB21; transcription-DN 90.1 0.6 2.1E-05 38.4 6.2 50 63-118 7-56 (126)
29 1h8a_C AMV V-MYB, MYB transfor 90.1 0.68 2.3E-05 37.9 6.5 51 63-118 23-73 (128)
30 1h8a_C AMV V-MYB, MYB transfor 90.0 0.71 2.4E-05 37.8 6.5 47 65-117 77-123 (128)
31 2ltp_A Nuclear receptor corepr 88.8 0.074 2.5E-06 42.1 0.0 51 65-121 14-64 (89)
32 2k9n_A MYB24; R2R3 domain, DNA 88.8 0.81 2.8E-05 36.5 5.9 45 68-117 2-46 (107)
33 3zqc_A MYB3; transcription-DNA 88.3 0.99 3.4E-05 37.2 6.3 52 65-122 52-103 (131)
34 1h89_C C-MYB, MYB proto-oncoge 87.8 1.1 3.6E-05 37.9 6.3 50 63-118 106-155 (159)
35 3osg_A MYB21; transcription-DN 87.8 1 3.4E-05 37.0 6.0 49 66-120 61-109 (126)
36 4eef_G F-HB80.4, designed hema 86.6 0.37 1.3E-05 38.4 2.5 46 68-115 21-66 (74)
37 1h89_C C-MYB, MYB proto-oncoge 86.3 1.6 5.4E-05 36.9 6.5 50 64-118 55-104 (159)
38 2juh_A Telomere binding protei 85.2 1.6 5.3E-05 37.1 5.9 54 62-118 12-67 (121)
39 2roh_A RTBP1, telomere binding 85.1 2.7 9.1E-05 35.7 7.3 52 62-116 26-79 (122)
40 3zqc_A MYB3; transcription-DNA 84.7 1.3 4.5E-05 36.4 5.2 46 68-118 3-48 (131)
41 2ckx_A NGTRF1, telomere bindin 84.0 2.1 7.1E-05 33.9 5.8 47 69-118 2-50 (83)
42 1wgx_A KIAA1903 protein; MYB D 83.0 2.5 8.6E-05 33.1 5.8 50 69-120 10-59 (73)
43 2crg_A Metastasis associated p 75.8 3.7 0.00013 31.2 4.6 45 65-114 6-50 (70)
44 1x58_A Hypothetical protein 49 70.6 9.9 0.00034 29.1 5.9 48 65-119 6-54 (62)
45 2li6_A SWI/SNF chromatin-remod 57.4 3.1 0.00011 34.1 0.9 45 72-119 49-97 (116)
46 4a69_C Nuclear receptor corepr 56.2 18 0.0006 28.9 5.1 43 65-113 41-83 (94)
47 2lm1_A Lysine-specific demethy 55.2 6.7 0.00023 31.3 2.5 45 72-117 44-94 (107)
48 2cxy_A BAF250B subunit, HBAF25 52.3 7.8 0.00027 32.1 2.5 45 72-117 51-101 (125)
49 2eqy_A RBP2 like, jumonji, at 50.4 14 0.00047 30.5 3.8 46 72-118 42-93 (122)
50 2jxj_A Histone demethylase jar 48.1 12 0.00041 29.2 2.9 45 72-117 36-86 (96)
51 2jrz_A Histone demethylase jar 46.0 11 0.00038 30.8 2.5 46 72-118 40-91 (117)
52 1c20_A DEAD ringer protein; DN 44.7 15 0.00052 30.4 3.1 47 72-119 52-105 (128)
53 2kk0_A AT-rich interactive dom 42.1 15 0.0005 31.3 2.7 47 72-119 64-117 (145)
54 1kkx_A Transcription regulator 40.0 7.9 0.00027 32.3 0.7 45 72-119 48-96 (123)
55 1ig6_A MRF-2, modulator recogn 38.3 8.7 0.0003 30.7 0.7 46 72-118 33-85 (107)
56 1ign_A Protein (RAP1); RAP1,ye 37.2 37 0.0013 32.1 4.8 54 66-122 7-63 (246)
57 1qgp_A Protein (double strande 32.3 55 0.0019 24.6 4.3 46 70-118 11-56 (77)
58 4b4c_A Chromodomain-helicase-D 30.8 56 0.0019 28.2 4.6 57 64-121 4-60 (211)
59 2rq5_A Protein jumonji; develo 28.1 50 0.0017 27.6 3.7 47 72-119 42-95 (121)
60 3b73_A PHIH1 repressor-like pr 27.8 94 0.0032 25.3 5.2 50 67-120 7-56 (111)
61 1tc3_C Protein (TC3 transposas 21.5 1.3E+02 0.0043 18.5 3.9 41 71-119 7-47 (51)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=3.1e-28 Score=188.00 Aligned_cols=59 Identities=44% Similarity=0.750 Sum_probs=56.4
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhccc
Q 017464 63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKI 122 (371)
Q Consensus 63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~ 122 (371)
.+|+|++||+|||++||+||++|| .++|+||.||++|+|+|||++||+|||||||++..
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999 79999999999999999999999999999998754
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.00091 Score=50.79 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=45.8
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCC---CchhHHHhhcCCCCCCHHHHHHhhhhhhhcccC
Q 017464 66 PRLRWTPDLHLRFVNAVEKLGGQER---ATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKID 123 (371)
Q Consensus 66 pRlrWT~ELH~rFV~AV~~LGG~ek---AtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~ 123 (371)
.+-.||+|-+..|++||..+| .+. -.+..|.+.| +|-|..||+.|.|+|-.....
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHHh
Confidence 455899999999999999999 222 3588999987 579999999999999876543
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.05 E-value=0.0013 Score=51.63 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=42.6
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS 119 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl 119 (371)
..+-.||+|.+.+|++||+.+|+ .++.|.++|+ +-|..||+.|-++|-.
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLPI 64 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhcc
Confidence 35678999999999999999994 3899999986 6999999999988843
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.88 E-value=0.002 Score=48.80 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=45.5
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcccC
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKID 123 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~ 123 (371)
..+-.||+|.+..|++||..+|- .+..|..+| +|-|..+|+.|.++|..+...
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHh
Confidence 34568999999999999999993 599999976 689999999999999776543
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.49 E-value=0.0066 Score=44.59 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=42.1
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464 66 PRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS 119 (371)
Q Consensus 66 pRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl 119 (371)
.+-.||+|...++++||..+| . ..++.|.+.| +|.|..+++.|-++|-.
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 455799999999999999999 1 2389999998 67999999999888855
No 6
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.44 E-value=0.0087 Score=46.42 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=46.4
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcccCCCCC
Q 017464 66 PRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKIDDPGR 127 (371)
Q Consensus 66 pRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~~~~~q 127 (371)
..-.||.|-+..|+.||..+++-..-.+.+|.+.| |-|..+|+.|.+++......+++.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~~~~~G~ 65 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSVTCSPGM 65 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSCCCCSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhcCccCCC
Confidence 34479999999999999999843345688899998 589999999999887654434444
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.14 E-value=0.0086 Score=56.24 Aligned_cols=53 Identities=25% Similarity=0.398 Sum_probs=46.0
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhccc
Q 017464 64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKI 122 (371)
Q Consensus 64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~ 122 (371)
.+..-+||+|.+..|++|+..+| -+ +..|.++| ++-|..+|+.|.++|+.+..
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KD---W~~IAk~V--gTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RD---FQAISDVI--GNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SC---HHHHHHHH--SSCCHHHHHHHHHHTTTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cC---HHHHHHHc--CCCCHHHHHHHHHHHHHHhh
Confidence 35778999999999999999999 33 99999985 56999999999999997643
No 8
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=96.06 E-value=0.013 Score=42.91 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=40.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464 68 LRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS 119 (371)
Q Consensus 68 lrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl 119 (371)
-.||++...++++||+++|- ..++.|.+.|+. |.|..|++.|-++|.+
T Consensus 10 ~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGL---GNWADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 35999999999999999991 238999999862 6999999999988864
No 9
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=95.87 E-value=0.022 Score=42.67 Aligned_cols=54 Identities=13% Similarity=0.163 Sum_probs=45.1
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464 63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS 119 (371)
Q Consensus 63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl 119 (371)
.++++-.||+|.-...+++|+++|. -.+..|.+.|+..|.|-.+++-+-..|-.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 3567889999999999999999992 14899999997668999999987766644
No 10
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.83 E-value=0.013 Score=59.51 Aligned_cols=53 Identities=25% Similarity=0.370 Sum_probs=46.6
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhccc
Q 017464 64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKI 122 (371)
Q Consensus 64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~ 122 (371)
.+...+||++-|..|++||.++|- + ++.|-++++. -|..||++|.++||....
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-d---w~~IA~~VgT--KT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-D---FQAISDVIGN--KSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-C---HHHHHHHHSS--CCHHHHHHHHHHTTTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-C---HHHHHHHhCC--CCHHHHHHHHHHHHHHhC
Confidence 346789999999999999999983 3 9999999887 799999999999997643
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.44 E-value=0.024 Score=44.07 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=41.4
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS 119 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl 119 (371)
..+-.||++-...|+.||..+|.-..-.+..|.++| ||-|..+|+.|-+.+..
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 345569999999999999999821123466787776 58999999999887754
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=95.17 E-value=0.053 Score=39.33 Aligned_cols=51 Identities=12% Similarity=0.151 Sum_probs=42.3
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464 64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS 119 (371)
Q Consensus 64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl 119 (371)
...+-.||+|...+++++|.++|- -.+..|.+.| +|.|..+++-|-++|-.
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHHcC
Confidence 345678999999999999999992 2389999997 68999999988777643
No 13
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=95.06 E-value=0.049 Score=38.37 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=39.8
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464 67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117 (371)
Q Consensus 67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY 117 (371)
+-.||+|....++++|.++|. ..++.|.+.| +|-|..+++-|-++|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 467999999999999999993 2489999987 589999999887766
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=94.79 E-value=0.066 Score=37.81 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=39.8
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464 67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR 118 (371)
+-.||+|....++++|.++|. ..+..|...| +|-|..+++-|-+.|-
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence 457999999999999999993 2488999887 6899999998877663
No 15
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=94.67 E-value=0.087 Score=37.50 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=40.0
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464 67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117 (371)
Q Consensus 67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY 117 (371)
|-.||+|.....+++|+.+|. ..++.|.+.|+..|-|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 148999999876689999999765554
No 16
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=94.63 E-value=0.078 Score=39.84 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=39.8
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhh
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQ 115 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQ 115 (371)
..|-.||+|.-...+++|+++|.- .++.|.+.+...|.|-.|++-.-.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEG---NWAAISKNYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTT---CHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCC---chHHHHhhcCCCCCCHHHHHHHHH
Confidence 345679999999999999999921 389999999888999999985543
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.05 E-value=0.12 Score=38.20 Aligned_cols=51 Identities=12% Similarity=0.255 Sum_probs=42.8
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464 63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120 (371)
Q Consensus 63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~ 120 (371)
+...+-.||+|-..+++++|..+|. .+..|.++| |.|-.+|+-|-+.|-..
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhCh
Confidence 3455668999999999999999993 589999955 59999999999888654
No 18
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=93.70 E-value=0.053 Score=43.79 Aligned_cols=58 Identities=24% Similarity=0.359 Sum_probs=40.1
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHh------------------hcCCCCCCHHHHHHhhhhhhhcccCC
Q 017464 64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQ------------------MMDIKGLSIAHVKSHLQMYRSKKIDD 124 (371)
Q Consensus 64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILe------------------lM~V~GLT~~~VkSHLQKYRl~k~~~ 124 (371)
++..-+|.++|-+.|++|+..+- +. .+-|-||. .-| .--|+.||.||||.-+..+..+
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp-~~-g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~~ 78 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYP-PC-GRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSRD 78 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSC-SS-SCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTTC
T ss_pred CCcCCcCCHHHHHHHHHHHHHcC-CC-CccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhhh
Confidence 34567899999999999999885 11 11222221 111 4579999999999988766544
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.60 E-value=0.17 Score=37.84 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=41.5
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR 118 (371)
..+-.||+|-..+++++|.++|- ..++.|...|+ |.|..+++-|-..|-
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEWL 55 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHHc
Confidence 45668999999999999999992 24899999986 899999998877764
No 20
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.55 E-value=0.22 Score=36.75 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=36.8
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHh
Q 017464 64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSH 113 (371)
Q Consensus 64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSH 113 (371)
++..-.||++-|..|++|+.++|- ....|..+| |+-|..+|.-|
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l--~~rt~~~~v~~ 52 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYL--ERKSVPDCVLY 52 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHC--TTSCHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHH
Confidence 456678999999999999999983 378998764 67999999865
No 21
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=92.67 E-value=0.18 Score=40.85 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=42.0
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464 67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120 (371)
Q Consensus 67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~ 120 (371)
.-.||+|-...|+.||..+|--..-.+..|...| ||-|..+|+.|-+.+...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAV--EGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS--TTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 4469999999999999999822124578898887 589999999999887643
No 22
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=92.39 E-value=0.37 Score=39.94 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=43.2
Q ss_pred cCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcC--CCCCCHHHHHHhhhhhh
Q 017464 62 RSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMD--IKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 62 r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~--V~GLT~~~VkSHLQKYR 118 (371)
..++.|..||+|.-...+++|+++|.- .++.|+..+. .+|.|..++|-+...+-
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnll 63 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLV 63 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999931 3899999763 38999999996544433
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=91.98 E-value=0.36 Score=38.05 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=39.9
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY 117 (371)
-.+-.||+|-...+++||.++|. .+..|.+.| ||-|..+|+.|-..+
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 34568999999999999999994 388998875 799999999987654
No 24
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.54 E-value=0.76 Score=34.23 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=34.9
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHh
Q 017464 64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSH 113 (371)
Q Consensus 64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSH 113 (371)
...+-.||+|-|..|.+|+.++| -+ ...|...| |+.-|..+|..+
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHH
Confidence 45567899999999999999999 33 67787632 456899988744
No 25
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=91.39 E-value=0.52 Score=36.63 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=40.6
Q ss_pred cccccCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhh
Q 017464 58 RPYVRSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQ 115 (371)
Q Consensus 58 r~y~r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQ 115 (371)
.-|..+.-.+-.||+|.-...+++|.++| .. +..|.+.| |.|-.+|+.+..
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~k---W~~IA~~l---gRt~~q~knRw~ 64 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHG-ND---WATIGAAL---GRSASSVKDRCR 64 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHS-SC---HHHHHHHH---TSCHHHHHHHHH
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHC-CC---HHHHHHHh---CCCHHHHHHHHH
Confidence 33445667788999999999999999999 22 99999999 899999998754
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=91.18 E-value=0.39 Score=37.85 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=39.4
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464 67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117 (371)
Q Consensus 67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY 117 (371)
+-.||+|....++.+|+.+|.. .++.|.+.| +|.|..+++.|-+.|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 4579999999999999999942 388999987 689999999887766
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=90.35 E-value=0.5 Score=37.74 Aligned_cols=50 Identities=12% Similarity=0.241 Sum_probs=42.0
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~ 120 (371)
-.+-.||+|-...++.+|..+|. .+..|...| ||-|..+|+.|-..+..+
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence 34568999999999999999993 489999987 789999999987766543
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=90.12 E-value=0.6 Score=38.35 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=42.5
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464 63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR 118 (371)
....+..||+|.-.+++++|+++|. .++.|.+.| +|.|..+++.+-..|-
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 4567788999999999999999994 599999887 5799999998777664
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=90.06 E-value=0.68 Score=37.89 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=41.8
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464 63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR 118 (371)
....+-.||+|.-.+++++|+.+|.. .++.|.+.| +|-|..+++-+-..|-
T Consensus 23 p~~~k~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 23 PELNKGPWTKEEDQRVIEHVQKYGPK---RWSDIAKHL--KGRIGKQCRERWHNHL 73 (128)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHTCSC---CHHHHHHHS--SSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC---CHHHHHHHh--cCCcHHHHHHHHHHhc
Confidence 34456789999999999999999932 389999987 5899999998777654
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=89.95 E-value=0.71 Score=37.76 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=40.0
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY 117 (371)
-.+-.||+|....++++|.++|. .+..|.+.| ||-|..+|+.|-..+
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAVKNHWNST 123 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGS--TTCCHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc----CHHHHHHHC--CCCCHHHHHHHHHHH
Confidence 34567999999999999999993 389999876 799999999886654
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=88.76 E-value=0.074 Score=42.11 Aligned_cols=51 Identities=12% Similarity=0.179 Sum_probs=42.7
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcc
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKK 121 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k 121 (371)
-.+-.||+|....|+++|..+|- .+..|...| +|-|..+|+.|.+.|..+.
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l--~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR----NWSAIARMV--GSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 34567999999999999999993 389998885 6899999999988776544
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=88.80 E-value=0.81 Score=36.50 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=37.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhh
Q 017464 68 LRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMY 117 (371)
Q Consensus 68 lrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKY 117 (371)
..||+|.-.+++.+|+.+|.. .+..|.+.|+ |.|..+++-+-..|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~~--~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK---DWIRISQLMI--TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS---CHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCC---CHHHHhhhcC--CCCHHHHHHHHHHH
Confidence 479999999999999999942 4899999885 79999998766554
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=88.29 E-value=0.99 Score=37.22 Aligned_cols=52 Identities=21% Similarity=0.352 Sum_probs=43.0
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhccc
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKKI 122 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k~ 122 (371)
..+-.||+|-...++++|..+|.. +..|.+.| +|.|..+|+.|-..|.....
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~----W~~Ia~~l--~gRt~~~~k~rw~~~l~~~~ 103 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSK----WSVIAKLI--PGRTDNAIKNRWNSSISKRI 103 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSC----HHHHTTTS--TTCCHHHHHHHHHHTTGGGC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHc--CCCCHHHHHHHHHHHHHHHh
Confidence 344579999999999999999953 89999875 68999999998877765544
No 34
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=87.80 E-value=1.1 Score=37.91 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=41.3
Q ss_pred CCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464 63 SKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 63 ~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR 118 (371)
....+..||+|-...++++|.++|. .+..|.+.| ||-|..+|+.|-..+-
T Consensus 106 p~~~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~l--~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 106 PEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNSTM 155 (159)
T ss_dssp TTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHTTT
T ss_pred ccccccCCChHHHHHHHHHHHHHCC----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 3345678999999999999999993 489999875 8999999999876543
No 35
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=87.78 E-value=1 Score=37.04 Aligned_cols=49 Identities=16% Similarity=0.334 Sum_probs=41.0
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464 66 PRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120 (371)
Q Consensus 66 pRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~ 120 (371)
.+-.||+|-...++++|.++|. .+..|.+.| +|.|..+|+.|-..+..+
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR----QWAIIAKFF--PGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHh
Confidence 4457999999999999999994 389999865 799999999987666544
No 36
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=86.57 E-value=0.37 Score=38.38 Aligned_cols=46 Identities=24% Similarity=0.241 Sum_probs=35.9
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhh
Q 017464 68 LRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQ 115 (371)
Q Consensus 68 lrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQ 115 (371)
-.||.+-...|..|+..++.-..-.+.+|.+.+ ||-|.++|+.|-|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V--pGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV--KGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS--CSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc--CCCCHHHHHHHHH
Confidence 359999999999999999733334456677665 5899999999966
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=86.29 E-value=1.6 Score=36.87 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=41.4
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464 64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR 118 (371)
...+-.||+|....++.+|..+|. -.+..|.+.| +|.|..+++.+-..|-
T Consensus 55 ~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 55 ELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL 104 (159)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTS--TTCCHHHHHHHHHHTT
T ss_pred CcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHc--CCCCHHHHHHHHHHHh
Confidence 445678999999999999999993 2378999887 6899999998876663
No 38
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=85.20 E-value=1.6 Score=37.13 Aligned_cols=54 Identities=17% Similarity=0.062 Sum_probs=43.9
Q ss_pred cCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcC--CCCCCHHHHHHhhhhhh
Q 017464 62 RSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMD--IKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 62 r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~--V~GLT~~~VkSHLQKYR 118 (371)
..+++|-.||+|.-...+++|+++|. -.++.|+..+. .+|.|-.++|-+...+-
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999993 13899999875 38999999996654443
No 39
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=85.14 E-value=2.7 Score=35.74 Aligned_cols=52 Identities=19% Similarity=0.127 Sum_probs=41.8
Q ss_pred cCCCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhc--CCCCCCHHHHHHhhhh
Q 017464 62 RSKMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMM--DIKGLSIAHVKSHLQM 116 (371)
Q Consensus 62 r~kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM--~V~GLT~~~VkSHLQK 116 (371)
..++.|-.||+|.-...+++|+++|. -.++.|+..+ ..+|.|..++|-+...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKdRWrn 79 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKDKWKT 79 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 34678899999999999999999993 1389999875 3489999999954333
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=84.70 E-value=1.3 Score=36.45 Aligned_cols=46 Identities=11% Similarity=-0.067 Sum_probs=38.7
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464 68 LRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 68 lrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR 118 (371)
..||+|.-.+.+++|..+|.. .++.|.+.| +|-|..++.-+-+.|-
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQ---NWPRITSFL--PNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSC---CGGGGTTSC--TTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcC---CHHHHHHHH--CCCCHHHHHHHHhhcc
Confidence 469999999999999999932 388998887 6899999998777664
No 41
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=84.01 E-value=2.1 Score=33.90 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcC--CCCCCHHHHHHhhhhhh
Q 017464 69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMD--IKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~--V~GLT~~~VkSHLQKYR 118 (371)
.||+|.....+++|+++|. -.++.|++... ++|.|..+||-+-..+-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 4999999999999999993 13899998643 58999999997655443
No 42
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=83.01 E-value=2.5 Score=33.11 Aligned_cols=50 Identities=10% Similarity=0.009 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464 69 RWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120 (371)
Q Consensus 69 rWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~ 120 (371)
.||.+-..+|..|+..++-..--.+.+|.+.+ +|-|.++|..|-+.....
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V--~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAV--GSRSPEECQRKYMENPRG 59 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT--TTSCHHHHHHHHHHSSSS
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc--CCCCHHHHHHHHHHHHhc
Confidence 59999999999999999722223466777765 579999999887666433
No 43
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=75.77 E-value=3.7 Score=31.19 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=35.4
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhh
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHL 114 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHL 114 (371)
...-.||++-|..|.+|+...| .+ ...|...| |+.-|..+|..+-
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 4566899999999999999999 33 67777621 5668988888664
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=70.61 E-value=9.9 Score=29.15 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=39.6
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcC-CCCCCHHHHHHhhhhhhh
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMD-IKGLSIAHVKSHLQMYRS 119 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~-V~GLT~~~VkSHLQKYRl 119 (371)
+.|-.||+|.-...++.|+++|- .++.|+.-.. .++.|...||. |||.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKd---k~r~ 54 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAH---KYHR 54 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHH---HHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHH---HHHH
Confidence 46778999999999999999993 5999996433 47899999994 6665
No 45
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=57.44 E-value=3.1 Score=34.06 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhCCCCCC----chhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQERA----TPKLVLQMMDIKGLSIAHVKSHLQMYRS 119 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ekA----tPK~ILelM~V~GLT~~~VkSHLQKYRl 119 (371)
-+|+..|.. |..+||.++. .|+.|.+.|+++. ...++.|=.||=.
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 478888875 7889998763 6899999999987 4667777666643
No 46
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=56.24 E-value=18 Score=28.95 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=33.5
Q ss_pred CCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHh
Q 017464 65 MPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSH 113 (371)
Q Consensus 65 KpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSH 113 (371)
+..-.||++-|..|.+|+.+.|-. ...|.+.| +.-|..++--|
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~----F~~Ia~~l--~~Kt~~~cV~~ 83 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKN----FGLIASFL--ERKTVAECVLY 83 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTC----HHHHHHTC--TTCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCC----HHHHHHHc--CCCCHHHHHHH
Confidence 456679999999999999999832 68886665 56887776644
No 47
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=55.25 E-value=6.7 Score=31.29 Aligned_cols=45 Identities=24% Similarity=0.167 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCCCC----chhHHHhhcCCCCCC--HHHHHHhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQERA----TPKLVLQMMDIKGLS--IAHVKSHLQMY 117 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ekA----tPK~ILelM~V~GLT--~~~VkSHLQKY 117 (371)
-+|++.|.. |..+||.++. .|+.|.+.|+++.-| ...++.|=.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 489998876 6789998654 588999999997632 13444444444
No 48
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=52.28 E-value=7.8 Score=32.05 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhCCCCCC----chhHHHhhcCCCCCC--HHHHHHhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQERA----TPKLVLQMMDIKGLS--IAHVKSHLQMY 117 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ekA----tPK~ILelM~V~GLT--~~~VkSHLQKY 117 (371)
-+|++.|.. |..+||.++. .|+.|.+.|+++.-| ...++.|=.||
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478888875 7789998753 689999999998632 12344444444
No 49
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.43 E-value=14 Score=30.55 Aligned_cols=46 Identities=17% Similarity=0.095 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhHHHhhcCCCCCCH--HHHHHhhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQER----ATPKLVLQMMDIKGLSI--AHVKSHLQMYR 118 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ek----AtPK~ILelM~V~GLT~--~~VkSHLQKYR 118 (371)
-+|++.|.. |..+||.++ ..|+.|.+.|+++.-+. ..++.|=+||=
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 478888875 788999865 46899999999976432 34555555553
No 50
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=48.07 E-value=12 Score=29.24 Aligned_cols=45 Identities=22% Similarity=-0.005 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhHHHhhcCCCCCC--HHHHHHhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQER----ATPKLVLQMMDIKGLS--IAHVKSHLQMY 117 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ek----AtPK~ILelM~V~GLT--~~~VkSHLQKY 117 (371)
-+|+..|.. |..+||.++ -.|+.|.+.|+++.-+ ...++.|=+||
T Consensus 36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 378888875 778899876 4588999999996533 22444444444
No 51
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=46.00 E-value=11 Score=30.82 Aligned_cols=46 Identities=22% Similarity=0.034 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhHHHhhcCCCCCC--HHHHHHhhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQER----ATPKLVLQMMDIKGLS--IAHVKSHLQMYR 118 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ek----AtPK~ILelM~V~GLT--~~~VkSHLQKYR 118 (371)
-+|++.|.. |..+||.++ -.|+.|.+.|+++.-| ...++.|=+||=
T Consensus 40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L 91 (117)
T 2jrz_A 40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIV 91 (117)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTT
T ss_pred ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 378888875 778999865 3589999999997433 234566555553
No 52
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=44.72 E-value=15 Score=30.36 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhHHHhhcCCCCC-C--HHHHHHhhhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQER----ATPKLVLQMMDIKGL-S--IAHVKSHLQMYRS 119 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ek----AtPK~ILelM~V~GL-T--~~~VkSHLQKYRl 119 (371)
-+||..|.. |..+||.++ ..|+.|.+.|+++.- | ...++.|=.||=.
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~ 105 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLY 105 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 489988876 678999865 358899999999752 2 3556666665543
No 53
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=42.14 E-value=15 Score=31.29 Aligned_cols=47 Identities=15% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhHHHhhcCCCCC-C--HHHHHHhhhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQER----ATPKLVLQMMDIKGL-S--IAHVKSHLQMYRS 119 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ek----AtPK~ILelM~V~GL-T--~~~VkSHLQKYRl 119 (371)
-+|+..|.. |..+||.++ -.|+.|.+.|+++.- | ...++.|=.||=.
T Consensus 64 vDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~ 117 (145)
T 2kk0_A 64 LDLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLY 117 (145)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSS
T ss_pred ecHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHH
Confidence 478888876 778999875 458899999999762 1 3456666666543
No 54
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=40.02 E-value=7.9 Score=32.32 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhCCCCCC----chhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQERA----TPKLVLQMMDIKGLSIAHVKSHLQMYRS 119 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ekA----tPK~ILelM~V~GLT~~~VkSHLQKYRl 119 (371)
-+|++.|.. |..+||.++. .|+.|.+.|+++. -..++.|=.||=.
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 96 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence 478887765 7899998664 5888999999987 6678877666654
No 55
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=38.28 E-value=8.7 Score=30.74 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCCCC----chhHHHhhcCCCCC-C--HHHHHHhhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQERA----TPKLVLQMMDIKGL-S--IAHVKSHLQMYR 118 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ekA----tPK~ILelM~V~GL-T--~~~VkSHLQKYR 118 (371)
-+|+..|.. |..+||.++. .|+.|.+.|+++.- | -.+++.|=+||=
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L 85 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLI 85 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 478888875 7889998754 58899999999652 2 135666555553
No 56
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=37.21 E-value=37 Score=32.14 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCccCCHHHHHHHHHHHHHhCCCC--CCc-hhHHHhhcCCCCCCHHHHHHhhhhhhhccc
Q 017464 66 PRLRWTPDLHLRFVNAVEKLGGQE--RAT-PKLVLQMMDIKGLSIAHVKSHLQMYRSKKI 122 (371)
Q Consensus 66 pRlrWT~ELH~rFV~AV~~LGG~e--kAt-PK~ILelM~V~GLT~~~VkSHLQKYRl~k~ 122 (371)
.+-.||+|.-..-+++|.++| .. ... +..|..+ +||-|-.+|+.|...|-....
T Consensus 7 ~k~~FT~EED~~Ile~v~k~G-n~r~ghk~W~~IAk~--LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNP-TRRTTHTLYDEISHY--VPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSG-GGTTCSHHHHHHTTT--STTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhC-cCccccccHHHHHHH--cCCCCHHHHHHHHHHHHhhhc
Confidence 456899999999999999998 32 123 7788886 469999999999888876554
No 57
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=32.27 E-value=55 Score=24.64 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhh
Q 017464 70 WTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYR 118 (371)
Q Consensus 70 WT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYR 118 (371)
=++++.++-+.++...|--+..+.+.|.+.++| +...|..||.+-.
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~ 56 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHH
Confidence 367888889999999993356788999999996 5677888876653
No 58
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=30.81 E-value=56 Score=28.20 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=43.1
Q ss_pred CCCCccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhcc
Q 017464 64 KMPRLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSKK 121 (371)
Q Consensus 64 kKpRlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~k 121 (371)
|.+.--||..--++|+.|+.++|-+ .-....|++--..++-|.+.|+...+.+...+
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~-~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGP-LERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSG-GGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCc-hhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 5667789999999999999999943 23457888877788889999998777766654
No 59
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=28.09 E-value=50 Score=27.58 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCCCC----CchhHHHhhcCCCCCC---HHHHHHhhhhhhh
Q 017464 72 PDLHLRFVNAVEKLGGQER----ATPKLVLQMMDIKGLS---IAHVKSHLQMYRS 119 (371)
Q Consensus 72 ~ELH~rFV~AV~~LGG~ek----AtPK~ILelM~V~GLT---~~~VkSHLQKYRl 119 (371)
-+|+..| .+|..+||.++ -.|+.|.+.|++|... ...++.|=.||=.
T Consensus 42 lDL~~Ly-~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 42 LDLACFF-RLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp CCHHHHH-HHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred ccHHHHH-HHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 3677766 46779999865 4588899999997543 3556776666654
No 60
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=27.76 E-value=94 Score=25.27 Aligned_cols=50 Identities=18% Similarity=0.271 Sum_probs=40.4
Q ss_pred CccCCHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhhc
Q 017464 67 RLRWTPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRSK 120 (371)
Q Consensus 67 RlrWT~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl~ 120 (371)
+..|-...-++.++.+..-| .++|..|.+.+++ |+|+..|..||++-...
T Consensus 7 ~~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~-giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG---NGSPKELEDRDEI-RISKSSVSRRLKKLADH 56 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTC-CSCHHHHHHHHHHHHHT
T ss_pred hhhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhc-CCCHHHHHHHHHHHHHC
Confidence 34688888899999988877 5789999887732 57999999999998763
No 61
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=21.52 E-value=1.3e+02 Score=18.51 Aligned_cols=41 Identities=7% Similarity=-0.129 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCchhHHHhhcCCCCCCHHHHHHhhhhhhh
Q 017464 71 TPDLHLRFVNAVEKLGGQERATPKLVLQMMDIKGLSIAHVKSHLQMYRS 119 (371)
Q Consensus 71 T~ELH~rFV~AV~~LGG~ekAtPK~ILelM~V~GLT~~~VkSHLQKYRl 119 (371)
+++....++..+. .| .+.+.|.+.|+| +...|..++..|+.
T Consensus 7 ~~~~~~~i~~~~~--~g---~s~~~IA~~lgi---s~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 7 SDTERAQLDVMKL--LN---VSLHEMSRKISR---SRHCIRVYLKDPVS 47 (51)
T ss_dssp CHHHHHHHHHHHH--TT---CCHHHHHHHHTC---CHHHHHHHHHCSTT
T ss_pred CHHHHHHHHHHHH--cC---CCHHHHHHHHCc---CHHHHHHHHhhHHh
Confidence 4555444544431 22 357889999987 78889989888864
Done!