Query 017467
Match_columns 371
No_of_seqs 280 out of 1569
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 08:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07607 BAR_SH3P_plant The Bin 100.0 1.5E-79 3.3E-84 552.2 23.6 207 68-276 1-208 (209)
2 KOG1118 Lysophosphatidic acid 100.0 7E-52 1.5E-56 397.0 20.7 244 86-363 67-366 (366)
3 cd07613 BAR_Endophilin_A1 The 99.9 4E-27 8.6E-32 221.1 17.0 151 96-280 59-218 (223)
4 cd07617 BAR_Endophilin_B2 The 99.9 1.3E-26 2.8E-31 217.0 19.7 173 67-277 19-219 (220)
5 cd07615 BAR_Endophilin_A3 The 99.9 2.1E-26 4.6E-31 216.3 20.0 156 91-280 53-218 (223)
6 cd07616 BAR_Endophilin_B1 The 99.9 3E-25 6.6E-30 209.2 20.6 181 67-277 19-228 (229)
7 cd07614 BAR_Endophilin_A2 The 99.9 1.3E-25 2.7E-30 211.2 17.4 151 96-280 59-218 (223)
8 cd07592 BAR_Endophilin_A The B 99.9 5.6E-25 1.2E-29 207.1 20.1 151 96-280 59-218 (223)
9 cd07594 BAR_Endophilin_B The B 99.9 5.5E-24 1.2E-28 201.0 21.2 180 67-277 19-228 (229)
10 cd07620 BAR_SH3BP1 The Bin/Amp 99.9 1.5E-22 3.3E-27 192.4 21.7 203 58-284 12-243 (257)
11 cd07619 BAR_Rich2 The Bin/Amph 99.9 2.7E-22 5.9E-27 191.0 21.1 197 67-285 17-235 (248)
12 cd07593 BAR_MUG137_fungi The B 99.9 4.8E-21 1E-25 179.6 21.3 150 99-278 49-208 (215)
13 cd07618 BAR_Rich1 The Bin/Amph 99.9 6.6E-21 1.4E-25 181.6 21.7 184 67-282 17-230 (246)
14 cd07595 BAR_RhoGAP_Rich-like T 99.8 2.4E-19 5.3E-24 171.0 21.7 158 100-284 56-230 (244)
15 cd07600 BAR_Gvp36 The Bin/Amph 99.8 3.2E-19 6.9E-24 170.0 16.9 211 39-277 17-241 (242)
16 KOG3725 SH3 domain protein SH3 99.7 2E-15 4.4E-20 143.5 20.4 278 62-358 33-374 (375)
17 KOG3771 Amphiphysin [Intracell 99.6 4.2E-13 9.2E-18 136.4 23.8 169 70-269 36-215 (460)
18 cd07307 BAR The Bin/Amphiphysi 99.5 5.9E-12 1.3E-16 110.6 22.0 188 80-275 5-192 (194)
19 smart00721 BAR BAR domain. 99.4 2.3E-11 5E-16 113.0 22.3 209 41-278 12-237 (239)
20 PF14604 SH3_9: Variant SH3 do 99.4 1.3E-13 2.9E-18 100.6 5.6 49 308-356 1-49 (49)
21 PF03114 BAR: BAR domain; Int 99.4 5E-11 1.1E-15 108.3 22.9 215 41-278 11-228 (229)
22 cd07588 BAR_Amphiphysin The Bi 99.3 1.5E-10 3.3E-15 108.6 20.6 170 79-279 27-207 (211)
23 cd07612 BAR_Bin2 The Bin/Amphi 99.3 2E-10 4.4E-15 107.7 19.3 178 65-279 19-207 (211)
24 PF07653 SH3_2: Variant SH3 do 99.3 3.6E-12 7.8E-17 94.5 6.0 54 305-358 1-55 (55)
25 KOG1029 Endocytic adaptor prot 99.2 1.6E-09 3.4E-14 115.4 24.1 59 303-361 693-753 (1118)
26 cd07611 BAR_Amphiphysin_I_II T 99.2 1.3E-09 2.9E-14 102.2 20.5 178 65-279 19-207 (211)
27 cd07590 BAR_Bin3 The Bin/Amphi 99.2 2.6E-09 5.7E-14 101.2 21.5 185 65-279 18-213 (225)
28 KOG2070 Guanine nucleotide exc 99.2 8.4E-12 1.8E-16 127.3 3.0 56 304-359 18-73 (661)
29 smart00326 SH3 Src homology 3 99.1 2.1E-10 4.5E-15 82.7 6.4 54 304-357 3-57 (58)
30 KOG4226 Adaptor protein NCK/Do 99.1 1.6E-10 3.5E-15 111.2 7.1 97 267-363 64-167 (379)
31 PF00018 SH3_1: SH3 domain; I 99.1 2.5E-10 5.5E-15 82.3 5.2 46 307-352 1-48 (48)
32 KOG0162 Myosin class I heavy c 99.0 1.3E-10 2.7E-15 123.1 4.8 55 303-357 1051-1105(1106)
33 cd00174 SH3 Src homology 3 dom 99.0 5.7E-10 1.2E-14 79.6 6.2 51 306-356 2-53 (54)
34 KOG2199 Signal transducing ada 99.0 1.3E-10 2.9E-15 116.3 3.3 57 303-359 215-271 (462)
35 KOG1029 Endocytic adaptor prot 99.0 3.7E-10 8.1E-15 120.1 4.1 54 305-358 1055-1108(1118)
36 KOG4225 Sorbin and SH3 domain- 99.0 8.9E-10 1.9E-14 111.4 6.3 56 305-360 232-287 (489)
37 cd07604 BAR_ASAPs The Bin/Amph 98.9 1.6E-07 3.4E-12 88.6 20.1 189 87-278 21-212 (215)
38 KOG2996 Rho guanine nucleotide 98.9 3.9E-09 8.4E-14 109.9 8.0 60 300-359 802-863 (865)
39 cd07639 BAR_ACAP1 The Bin/Amph 98.8 1.2E-06 2.6E-11 81.9 19.8 178 87-276 21-198 (200)
40 cd07606 BAR_SFC_plant The Bin/ 98.8 1.1E-06 2.3E-11 82.3 19.4 183 67-275 14-200 (202)
41 KOG4348 Adaptor protein CMS/SE 98.8 4.2E-09 9.1E-14 106.6 3.3 56 304-359 262-319 (627)
42 KOG4348 Adaptor protein CMS/SE 98.8 1.9E-09 4.2E-14 109.0 0.8 59 302-360 99-157 (627)
43 cd07603 BAR_ACAPs The Bin/Amph 98.7 1.4E-06 3.1E-11 81.3 19.2 180 85-276 19-198 (200)
44 KOG2856 Adaptor protein PACSIN 98.7 1.1E-06 2.3E-11 87.9 19.2 55 304-358 415-471 (472)
45 KOG3523 Putative guanine nucle 98.7 1.3E-09 2.8E-14 113.9 -2.2 87 274-360 575-667 (695)
46 PF10455 BAR_2: Bin/amphiphysi 98.7 1E-06 2.2E-11 86.5 17.6 154 108-278 126-287 (289)
47 cd07591 BAR_Rvs161p The Bin/Am 98.7 3.8E-06 8.3E-11 79.6 21.0 177 78-278 25-211 (224)
48 cd07634 BAR_GAP10-like The Bin 98.7 3.7E-06 8E-11 78.9 19.7 188 80-275 14-204 (207)
49 KOG4225 Sorbin and SH3 domain- 98.6 1.5E-08 3.3E-13 102.6 3.7 53 305-357 434-488 (489)
50 cd07602 BAR_RhoGAP_OPHN1-like 98.6 7.7E-06 1.7E-10 76.8 19.0 182 86-276 20-205 (207)
51 cd07642 BAR_ASAP2 The Bin/Amph 98.5 1.5E-05 3.2E-10 75.1 19.7 184 90-278 24-212 (215)
52 cd07637 BAR_ACAP3 The Bin/Amph 98.5 1.5E-05 3.2E-10 74.6 19.6 183 68-276 16-198 (200)
53 KOG1264 Phospholipase C [Lipid 98.5 6.7E-08 1.5E-12 103.8 2.7 60 302-361 773-833 (1267)
54 KOG2546 Abl interactor ABI-1, 98.4 1.1E-07 2.5E-12 96.2 3.0 55 305-359 425-479 (483)
55 cd07636 BAR_GRAF The Bin/Amphi 98.4 5.3E-05 1.1E-09 71.2 19.5 187 81-275 15-204 (207)
56 cd07601 BAR_APPL The Bin/Amphi 98.4 9.7E-05 2.1E-09 69.9 21.0 188 68-278 16-207 (215)
57 cd07638 BAR_ACAP2 The Bin/Amph 98.4 0.00012 2.7E-09 68.5 21.3 182 68-276 16-198 (200)
58 cd07635 BAR_GRAF2 The Bin/Amph 98.4 8.2E-05 1.8E-09 70.0 20.0 183 85-275 19-204 (207)
59 KOG4226 Adaptor protein NCK/Do 98.3 4.3E-07 9.4E-12 87.8 4.6 63 302-364 190-255 (379)
60 KOG0515 p53-interacting protei 98.3 7.5E-07 1.6E-11 92.5 4.5 58 304-361 684-744 (752)
61 KOG1702 Nebulin repeat protein 98.2 8.7E-07 1.9E-11 82.6 4.1 56 303-358 207-264 (264)
62 cd07599 BAR_Rvs167p The Bin/Am 98.2 0.00026 5.6E-09 66.2 20.7 133 131-272 72-210 (216)
63 cd07598 BAR_FAM92 The Bin/Amph 98.2 0.00037 8E-09 65.7 21.4 179 87-280 23-204 (211)
64 KOG3655 Drebrins and related a 98.2 3.8E-07 8.3E-12 93.5 1.4 55 304-358 428-483 (484)
65 PF08397 IMD: IRSp53/MIM homol 98.2 0.00039 8.4E-09 65.4 20.6 194 68-279 10-209 (219)
66 cd07589 BAR_DNMBP The Bin/Amph 98.1 0.0002 4.3E-09 66.5 17.2 158 78-271 19-186 (195)
67 KOG4792 Crk family adapters [S 98.1 1.2E-06 2.5E-11 82.9 1.3 60 303-362 124-184 (293)
68 KOG3601 Adaptor protein GRB2, 98.1 2E-06 4.4E-11 80.4 2.6 55 303-357 163-217 (222)
69 cd07641 BAR_ASAP1 The Bin/Amph 98.0 0.0011 2.4E-08 62.6 20.3 201 57-278 5-212 (215)
70 KOG3875 Peroxisomal biogenesis 98.0 3.3E-06 7.1E-11 82.9 3.5 60 304-363 269-335 (362)
71 KOG1843 Uncharacterized conser 97.9 7.2E-06 1.6E-10 83.0 2.6 54 304-357 417-472 (473)
72 cd07640 BAR_ASAP3 The Bin/Amph 97.9 0.0041 8.9E-08 58.3 20.3 180 87-278 21-210 (213)
73 cd07633 BAR_OPHN1 The Bin/Amph 97.8 0.0035 7.6E-08 58.9 19.1 179 85-275 19-204 (207)
74 KOG4773 NADPH oxidase [Energy 97.8 4.2E-06 9.1E-11 83.2 -0.5 68 296-363 168-235 (386)
75 KOG2222 Uncharacterized conser 97.7 6.5E-06 1.4E-10 84.9 -0.7 57 303-359 548-604 (848)
76 PF09325 Vps5: Vps5 C terminal 97.6 0.024 5.2E-07 52.9 22.0 158 106-274 62-233 (236)
77 cd07596 BAR_SNX The Bin/Amphip 97.6 0.015 3.3E-07 52.9 20.1 160 107-274 43-215 (218)
78 cd07605 I-BAR_IMD Inverse (I)- 97.6 0.02 4.3E-07 54.6 21.1 175 89-273 34-214 (223)
79 cd07631 BAR_APPL1 The Bin/Amph 97.6 0.024 5.2E-07 53.7 21.1 185 64-278 19-207 (215)
80 PF06456 Arfaptin: Arfaptin-li 97.5 0.049 1.1E-06 52.1 22.7 215 40-271 14-229 (229)
81 cd07632 BAR_APPL2 The Bin/Amph 97.3 0.035 7.6E-07 52.5 18.7 161 108-277 42-205 (215)
82 KOG4429 Uncharacterized conser 97.3 7.9E-05 1.7E-09 73.0 0.6 55 304-358 364-418 (421)
83 KOG2528 Sorting nexin SNX9/SH3 97.2 0.00014 3E-09 74.6 1.6 61 305-365 4-66 (490)
84 KOG4278 Protein tyrosine kinas 97.1 0.00039 8.5E-09 74.5 4.3 57 303-360 90-148 (1157)
85 cd07643 I-BAR_IMD_MIM Inverse 97.1 0.099 2.2E-06 50.0 19.8 133 127-265 68-208 (231)
86 cd07623 BAR_SNX1_2 The Bin/Amp 97.1 0.19 4.2E-06 47.5 21.6 185 66-274 24-219 (224)
87 cd07624 BAR_SNX7_30 The Bin/Am 97.1 0.07 1.5E-06 49.6 18.2 127 127-273 67-196 (200)
88 KOG3632 Peripheral benzodiazep 97.1 0.00045 9.7E-09 76.4 3.8 55 305-359 1140-1203(1335)
89 KOG4792 Crk family adapters [S 97.0 0.0014 3E-08 62.5 6.4 57 304-360 228-286 (293)
90 KOG1451 Oligophrenin-1 and rel 97.0 0.0007 1.5E-08 71.6 4.3 93 80-172 32-130 (812)
91 cd07625 BAR_Vps17p The Bin/Amp 96.9 0.45 9.8E-06 45.7 23.8 207 41-274 5-227 (230)
92 cd07660 BAR_Arfaptin The Bin/A 96.7 0.4 8.6E-06 45.2 19.8 178 86-274 20-197 (201)
93 PF06730 FAM92: FAM92 protein; 96.6 0.47 1E-05 45.2 20.1 163 103-278 46-209 (219)
94 KOG4575 TGc (transglutaminase/ 96.6 0.0032 6.9E-08 67.2 5.5 55 304-358 9-65 (874)
95 KOG0197 Tyrosine kinases [Sign 96.5 0.0015 3.3E-08 68.1 2.6 57 303-359 11-70 (468)
96 KOG3775 Mitogen-activated prot 96.4 0.0015 3.3E-08 65.9 2.2 57 304-360 263-321 (482)
97 cd07627 BAR_Vps5p The Bin/Amph 96.4 0.87 1.9E-05 42.8 20.7 158 107-272 43-211 (216)
98 cd00011 BAR_Arfaptin_like The 96.2 1.2 2.6E-05 42.1 20.1 178 85-274 19-200 (203)
99 KOG0609 Calcium/calmodulin-dep 96.1 0.0022 4.7E-08 67.4 1.0 55 304-358 215-281 (542)
100 KOG3557 Epidermal growth facto 96.0 0.0024 5.2E-08 68.2 1.1 55 305-360 502-557 (721)
101 cd07621 BAR_SNX5_6 The Bin/Amp 95.8 1.8 3.9E-05 41.3 21.0 147 107-271 63-211 (219)
102 KOG0040 Ca2+-binding actin-bun 95.7 0.0094 2E-07 68.8 4.1 198 89-361 827-1026(2399)
103 KOG3632 Peripheral benzodiazep 95.7 0.0095 2.1E-07 66.4 3.8 57 304-360 448-512 (1335)
104 cd07628 BAR_Atg24p The Bin/Amp 95.6 1.6 3.5E-05 40.2 17.8 40 127-166 58-97 (185)
105 cd07666 BAR_SNX7 The Bin/Amphi 95.4 1.3 2.9E-05 42.9 17.0 142 108-271 87-237 (243)
106 cd07664 BAR_SNX2 The Bin/Amphi 95.3 2.9 6.3E-05 40.2 20.4 97 51-166 17-116 (234)
107 KOG3601 Adaptor protein GRB2, 95.0 0.004 8.7E-08 58.7 -1.5 52 306-357 3-55 (222)
108 cd07646 I-BAR_IMD_IRSp53 Inver 94.9 3.9 8.4E-05 39.4 20.9 176 79-273 30-217 (232)
109 KOG0521 Putative GTPase activa 94.7 0.86 1.9E-05 50.9 15.5 184 59-268 23-210 (785)
110 cd07645 I-BAR_IMD_BAIAP2L1 Inv 94.7 4.3 9.4E-05 38.9 20.3 178 85-273 30-215 (226)
111 KOG3565 Cdc42-interacting prot 94.5 0.011 2.3E-07 64.2 0.2 58 302-359 577-637 (640)
112 cd07622 BAR_SNX4 The Bin/Amphi 94.4 4.5 9.8E-05 37.9 18.0 146 108-276 47-198 (201)
113 cd07626 BAR_SNX9_like The Bin/ 94.0 5 0.00011 37.7 16.8 57 107-165 44-104 (199)
114 KOG1451 Oligophrenin-1 and rel 93.8 7.7 0.00017 42.2 19.2 29 252-280 198-233 (812)
115 cd07663 BAR_SNX5 The Bin/Amphi 93.4 7.5 0.00016 37.2 22.9 128 125-271 75-210 (218)
116 cd07659 BAR_PICK1 The Bin/Amph 93.0 8.5 0.00018 36.7 19.2 166 86-272 20-208 (215)
117 cd07665 BAR_SNX1 The Bin/Amphi 92.9 9.4 0.0002 36.8 19.3 81 68-166 36-116 (234)
118 cd07630 BAR_SNX_like The Bin/A 92.7 8.6 0.00019 36.0 20.9 174 66-273 16-194 (198)
119 PF08239 SH3_3: Bacterial SH3 92.6 0.19 4.2E-06 36.4 4.1 36 321-356 18-55 (55)
120 cd07649 F-BAR_GAS7 The F-BAR ( 92.3 11 0.00024 36.1 20.4 45 126-170 56-100 (233)
121 cd07644 I-BAR_IMD_BAIAP2L2 Inv 91.4 13 0.00029 35.3 18.6 170 85-273 30-206 (215)
122 KOG0199 ACK and related non-re 90.6 0.23 5E-06 54.7 3.6 46 311-356 382-430 (1039)
123 cd07657 F-BAR_Fes_Fer The F-BA 89.7 20 0.00043 34.5 19.8 65 124-188 59-129 (237)
124 cd07658 F-BAR_NOSTRIN The F-BA 88.0 25 0.00055 33.6 21.0 42 126-167 58-99 (239)
125 KOG3876 Arfaptin and related p 88.0 30 0.00065 34.3 18.6 207 38-273 108-319 (341)
126 cd07667 BAR_SNX30 The Bin/Amph 88.0 27 0.00059 33.9 19.6 128 124-273 101-236 (240)
127 smart00287 SH3b Bacterial SH3 87.2 0.96 2.1E-05 33.4 4.0 35 321-355 26-61 (63)
128 PF14603 hSH3: Helically-exten 86.0 1.2 2.6E-05 36.8 4.1 43 316-358 29-72 (89)
129 cd07653 F-BAR_CIP4-like The F- 85.8 32 0.00069 32.5 19.8 41 126-166 61-101 (251)
130 PRK10884 SH3 domain-containing 85.8 0.77 1.7E-05 43.3 3.4 38 321-358 49-88 (206)
131 cd07651 F-BAR_PombeCdc15_like 85.5 33 0.00072 32.4 19.0 41 127-167 57-97 (236)
132 cd07629 BAR_Atg20p The Bin/Amp 84.9 32 0.0007 31.7 18.5 41 126-166 59-99 (187)
133 cd07676 F-BAR_FBP17 The F-BAR 82.9 48 0.001 32.2 17.8 81 107-187 41-130 (253)
134 PF06347 SH3_4: Bacterial SH3 82.6 2.4 5.2E-05 30.9 4.2 35 320-355 19-53 (55)
135 cd07652 F-BAR_Rgd1 The F-BAR ( 82.4 47 0.001 31.7 14.3 40 126-166 61-100 (234)
136 cd07662 BAR_SNX6 The Bin/Amphi 81.2 53 0.0011 31.5 20.4 175 66-272 35-211 (218)
137 KOG3812 L-type voltage-depende 79.6 1 2.2E-05 45.7 1.7 49 304-352 59-117 (475)
138 KOG2996 Rho guanine nucleotide 78.5 0.97 2.1E-05 48.7 1.2 45 318-362 625-672 (865)
139 cd07610 FCH_F-BAR The Extended 77.3 53 0.0012 29.3 19.8 89 126-226 53-141 (191)
140 cd07673 F-BAR_FCHO2 The F-BAR 70.7 1.1E+02 0.0024 29.9 24.5 40 126-166 63-102 (269)
141 KOG3705 Glycoprotein 6-alpha-L 70.3 4.1 8.8E-05 42.4 3.2 53 305-357 511-565 (580)
142 KOG3651 Protein kinase C, alph 68.5 1.4E+02 0.0031 30.3 15.3 159 92-274 156-340 (429)
143 cd07597 BAR_SNX8 The Bin/Amphi 67.2 1.2E+02 0.0026 29.1 18.7 147 126-275 87-243 (246)
144 KOG4384 Uncharacterized SAM do 64.0 6 0.00013 40.3 3.0 55 305-359 138-194 (361)
145 PF15290 Syntaphilin: Golgi-lo 63.3 95 0.0021 31.0 10.9 57 155-243 57-115 (305)
146 PRK13914 invasion associated s 61.8 11 0.00025 39.9 4.7 38 321-358 104-142 (481)
147 cd07686 F-BAR_Fer The F-BAR (F 60.5 1.7E+02 0.0036 28.4 19.8 42 125-166 60-101 (234)
148 cd07655 F-BAR_PACSIN The F-BAR 59.6 1.7E+02 0.0037 28.2 19.7 39 127-165 61-99 (258)
149 cd07675 F-BAR_FNBP1L The F-BAR 58.8 1.9E+02 0.004 28.3 19.4 59 107-166 41-102 (252)
150 PF11302 DUF3104: Protein of u 56.8 12 0.00027 30.0 3.0 25 319-343 3-33 (75)
151 PF03114 BAR: BAR domain; Int 54.6 1.6E+02 0.0034 26.2 15.1 15 212-226 169-183 (229)
152 cd07681 F-BAR_PACSIN3 The F-BA 54.6 2.2E+02 0.0048 27.9 20.2 37 127-163 61-97 (258)
153 cd07609 BAR_SIP3_fungi The Bin 54.2 2E+02 0.0044 27.3 16.9 94 130-241 63-160 (214)
154 COG3103 SH3 domain protein [Si 52.9 19 0.0004 34.2 4.1 38 321-358 49-88 (205)
155 smart00743 Agenet Tudor-like d 52.6 20 0.00043 26.5 3.4 23 321-343 2-24 (61)
156 cd07648 F-BAR_FCHO The F-BAR ( 48.0 2.6E+02 0.0055 26.7 18.6 40 126-166 56-95 (261)
157 cd07634 BAR_GAP10-like The Bin 46.5 2.7E+02 0.0058 26.5 14.2 152 60-230 7-186 (207)
158 cd07680 F-BAR_PACSIN1 The F-BA 40.1 3.7E+02 0.008 26.3 19.5 37 126-162 60-96 (258)
159 PF12913 SH3_6: SH3 domain of 37.9 55 0.0012 24.7 3.8 32 321-352 22-54 (54)
160 PF08397 IMD: IRSp53/MIM homol 37.1 3.5E+02 0.0077 25.3 15.8 61 87-154 15-75 (219)
161 TIGR03545 conserved hypothetic 36.7 4E+02 0.0086 29.0 11.5 68 162-230 152-231 (555)
162 KOG4673 Transcription factor T 35.4 7.1E+02 0.015 28.3 14.9 128 141-281 420-556 (961)
163 KOG2008 BTK-associated SH3-dom 33.8 5.4E+02 0.012 26.4 20.1 51 66-119 15-65 (426)
164 PF06675 DUF1177: Protein of u 32.1 46 0.001 32.7 3.3 34 41-85 239-272 (276)
165 KOG4682 Uncharacterized conser 30.0 62 0.0013 34.0 3.9 79 23-120 110-190 (488)
166 cd07669 BAR_SNX33 The Bin/Amph 29.3 5.1E+02 0.011 24.8 15.2 24 251-274 180-203 (207)
167 KOG3208 SNARE protein GS28 [In 27.7 1.7E+02 0.0036 28.4 6.1 17 2-18 8-24 (231)
168 cd07593 BAR_MUG137_fungi The B 27.5 5.4E+02 0.012 24.4 17.6 124 126-272 54-188 (215)
169 PRK12715 flgK flagellar hook-a 25.1 9.7E+02 0.021 26.6 12.3 107 55-198 55-161 (649)
170 smart00307 ILWEQ I/LWEQ domain 23.0 6.5E+02 0.014 23.8 12.9 17 77-93 25-41 (200)
171 KOG1314 DHHC-type Zn-finger pr 22.9 68 0.0015 33.1 2.7 45 315-360 329-385 (414)
172 PF05911 DUF869: Plant protein 22.4 1.2E+03 0.026 26.6 16.3 26 177-202 80-105 (769)
173 cd07637 BAR_ACAP3 The Bin/Amph 22.3 6.5E+02 0.014 23.6 14.5 118 84-226 39-175 (200)
174 PF10456 BAR_3_WASP_bdg: WASP- 22.0 7.3E+02 0.016 24.0 17.2 25 251-275 209-233 (237)
175 PF03333 PapB: Adhesin biosynt 21.8 1.7E+02 0.0037 24.3 4.4 37 85-134 40-76 (91)
176 cd07603 BAR_ACAPs The Bin/Amph 21.3 6.8E+02 0.015 23.4 14.0 117 67-196 15-158 (200)
177 cd07605 I-BAR_IMD Inverse (I)- 20.5 7.6E+02 0.016 23.6 16.8 46 105-157 43-88 (223)
178 cd07670 BAR_SNX18 The Bin/Amph 20.1 7.7E+02 0.017 23.6 14.3 24 251-274 180-203 (207)
No 1
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=100.00 E-value=1.5e-79 Score=552.23 Aligned_cols=207 Identities=54% Similarity=0.842 Sum_probs=203.2
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 017467 68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 147 (371)
Q Consensus 68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~ 147 (371)
|+|||||+||||||||||||||||||||++|+||+|+++||+|||||||+|++ +.+++|++|.++||.|+++|+++++
T Consensus 1 q~LekLY~STRaaKhFQrdIVrgvEg~is~g~Kq~Ei~~KlaeDc~KYG~en~--~~~~~LsrAa~~yG~a~~~mEkEre 78 (209)
T cd07607 1 QKLERLYASTRAAKHFQRDIVRGVEGFISTGSKQLEIGTKLAEDCKKYGSENP--SVNTALSRASLHYGSARNQMEKERE 78 (209)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhheechhHHHHHHHHHHHHHHhccCCC--CcccHHHHHHHHHhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999998 3667899999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-CcccHHHHHHHHHHHHHHHHH
Q 017467 148 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKAN 226 (371)
Q Consensus 148 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~Kl~elk~~ 226 (371)
+|++.|++||+|||++|++|+||||||||+|+||||||++|+|++||.||+.|+||+. |||++.||+.||+||+|||++
T Consensus 79 ~l~r~l~~QV~ePLRaMv~GaPLEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~ 158 (209)
T cd07607 79 NLHRVLSEQVAEPLRAMVYGAPLEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSS 158 (209)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467 227 MAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 276 (371)
Q Consensus 227 m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~ 276 (371)
|+.|||||++||..||.|||++|+++|++||++++.||+++++||++|+.
T Consensus 159 M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l~~ 208 (209)
T cd07607 159 MNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKLHD 208 (209)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999985
No 2
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=7e-52 Score=397.01 Aligned_cols=244 Identities=20% Similarity=0.378 Sum_probs=212.0
Q ss_pred HHHHHHHHHh-hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 017467 86 DLVKVAEVFT-AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM 164 (371)
Q Consensus 86 ~~vr~~~~~~-~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~ 164 (371)
.++.-|+|-. ..||||+|+ .||+||.+||.++| .+|+||.+|+++|+||++|++++++|+++|+++|||||+++
T Consensus 67 n~lsKvrG~~k~~~ypq~e~--~Lg~~mik~gkeLg---~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l 141 (366)
T KOG1118|consen 67 NTLSKVRGQVKEKGYPQTEG--LLGDVMIKHGKELG---DDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNL 141 (366)
T ss_pred HHHHHhcccccCCCCccchh--HHHHHHHHHHHhcC---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 4666667655 579999999 89999999999999 89999999999999999999999999999999999999999
Q ss_pred hhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017467 165 ITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAA 236 (371)
Q Consensus 165 ~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~ 236 (371)
+.++++++ ||||||||++ +|++|++ | ++|++|.+||+|+++. |+.
T Consensus 142 ~~~elK~i~hh~KKLEgRRldyD~kk-------------kk~~K~~-----d--EelrqA~eKfEESkE~-------aE~ 194 (366)
T KOG1118|consen 142 QLKELKDIQHHRKKLEGRRLDYDYKK-------------KKQGKIK-----D--EELRQALEKFEESKEL-------AED 194 (366)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHH-------------HHhccCC-----h--HHHHHHHHHHHHHHHH-------HHH
Confidence 99999985 9999999999 8999974 4 6999999999999998 999
Q ss_pred HHHHH-HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhh------hhcCCCCCCCC---------CC---C--
Q 017467 237 ALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSE------KQRKESAPPVI---------PS---E-- 295 (371)
Q Consensus 237 am~~v-e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~se------r~r~es~~pp~---------~~---~-- 295 (371)
+|.++ |.+.+| ++||.++|+++++||+++++||+.|...+.+. +++.++.|.+. ++ +
T Consensus 195 sM~nlle~d~eq--vsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a~~~prrey~p~~~~an~f~p~~~p~~~~g~ 272 (366)
T KOG1118|consen 195 SMFNLLENDVEQ--VSQLSALIQAQLDFHRQSTQILQELQMKLFSRIRDASSQPRREYVPRSVLANEFAPSGPPIQLNGK 272 (366)
T ss_pred HHHHHHhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCchhhcCCcccccccCCCCCCccccCCC
Confidence 99975 556677 89999999999999999999999999987662 23332222110 00 0
Q ss_pred ----------------------CCc----ccccceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeE
Q 017467 296 ----------------------NSS----QKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGW 349 (371)
Q Consensus 296 ----------------------s~s----~~~~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~ 349 (371)
+.+ ++++.++|+++|||+|++++||.|++||+|.|++++++|||+|+..|..|+
T Consensus 273 ~s~T~~t~~~ass~~~is~~p~~~p~rs~s~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~ 352 (366)
T KOG1118|consen 273 LSKTTSTPQSASSPSNISPKPPSTPNRSASQMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGM 352 (366)
T ss_pred CCcCccCccccCCcccCCCCCCCCCCcccCcccchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCc
Confidence 000 234567999999999999999999999999999999999999999999999
Q ss_pred ecCCceeeccCCCC
Q 017467 350 FPSANVEKRQRIPV 363 (371)
Q Consensus 350 FPsnYVE~i~~lP~ 363 (371)
||.|||+++.|+|.
T Consensus 353 FPvnYv~vlvpl~~ 366 (366)
T KOG1118|consen 353 FPVNYVEVLVPLPQ 366 (366)
T ss_pred cccceeEEeccCCC
Confidence 99999999999874
No 3
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=99.95 E-value=4e-27 Score=221.08 Aligned_cols=151 Identities=25% Similarity=0.400 Sum_probs=137.1
Q ss_pred hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 017467 96 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--- 172 (371)
Q Consensus 96 ~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--- 172 (371)
.++|||+|+ .||+||.+||.++| .+|.||.||+.||+|+++|+.++.+++..++++||+||+.+..++++++
T Consensus 59 ~~~~p~~~~--~Lg~~M~~~G~elg---~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~ 133 (223)
T cd07613 59 GPGYPQAEA--LLAEAMLKFGRELG---DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHH 133 (223)
T ss_pred CCCCCChHh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999 89999999999999 8999999999999999999999999999999999999999999999875
Q ss_pred -----hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhh
Q 017467 173 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQH 246 (371)
Q Consensus 173 -----~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~qqq 246 (371)
+||||+||+| +|..|+ ++ ++|++|+.||+++++. +...|.++ ++...
T Consensus 134 RKkLe~rRLd~D~~K-------------~r~~k~-----~e--eElr~A~~kFees~E~-------a~~~M~n~l~~e~e 186 (223)
T cd07613 134 LKKLEGRRLDFDYKK-------------KRQGKI-----PD--EELRQALEKFDESKEI-------AESSMFNLLEMDIE 186 (223)
T ss_pred HHHHHHHHHhHHHHH-------------HhCCCC-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHcCch
Confidence 9999999998 666554 34 7999999999999998 88889975 44455
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467 247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS 280 (371)
Q Consensus 247 rlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s 280 (371)
+ +++|..||+||++||++|.+||.+|...+..
T Consensus 187 ~--~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 187 Q--VSQLSALVQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 6799999999999999999999999998863
No 4
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=99.95 E-value=1.3e-26 Score=217.04 Aligned_cols=173 Identities=17% Similarity=0.200 Sum_probs=148.5
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHHHHHh-------------------hcCcchhhhhhhHhHHHhhhhccCCCCCCCCc
Q 017467 67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT-------------------AIGYKHIEAGTKLSEDCCRYGAENNQNINENI 127 (371)
Q Consensus 67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~-------------------~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~ 127 (371)
.++|++.--+|+.+- .+|++.++.++ .+++||+|. .||+||.+||.++| .+|.
T Consensus 19 f~~l~~~~D~tk~~~---~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~--~Lg~~M~~~g~~~g---~~s~ 90 (220)
T cd07617 19 FENLLARADSTKNWT---EKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAE--LLGQYMTEAANDFG---PGTP 90 (220)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHH--HHHHHHHHHHHhcC---CCCc
Confidence 567888777777653 34555444443 457899999 89999999999999 7999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHH
Q 017467 128 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQ 199 (371)
Q Consensus 128 l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~ 199 (371)
||.||+.||+|+++|++++++++..++++||+||++++.++++++ +|||||||.| +|+.
T Consensus 91 ~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K-------------~r~~ 157 (220)
T cd07617 91 YGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACK-------------ARLK 157 (220)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHh
Confidence 999999999999999999999999999999999999999999875 9999999999 6665
Q ss_pred hhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017467 200 RVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 277 (371)
Q Consensus 200 K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~ 277 (371)
| +| .+|++|++||+++++. +...|..+ +.+.++ +.+|.+||+|+++||++|++||.+|...
T Consensus 158 k------ae--~elr~A~~kf~~~~E~-------a~~~M~~il~~~~e~--l~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 219 (220)
T cd07617 158 K------AE--HELRVAQTEFDRQAEV-------TRLLLEGISSTHVNH--LRCLHEFVEAQATYYAQCYRHMLDLQKQ 219 (220)
T ss_pred c------cH--HHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 45 6999999999999998 88889876 333455 8899999999999999999999998864
No 5
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=99.95 E-value=2.1e-26 Score=216.28 Aligned_cols=156 Identities=22% Similarity=0.381 Sum_probs=139.1
Q ss_pred HHHHh-hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh
Q 017467 91 AEVFT-AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP 169 (371)
Q Consensus 91 ~~~~~-~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~ 169 (371)
++|=. .++|||.|+ .||+||.+||.++| .+|+||.||+.||+|+++|+.++.+++..++++||+||+.++.+++
T Consensus 53 ~~g~~k~~~~p~~~~--~Lg~~M~~~G~~lg---~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~di 127 (223)
T cd07615 53 IRGQVKTTGYPQTEG--LLGDCMLRYGRELG---EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKDL 127 (223)
T ss_pred HhcccccCCCCCchh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 578999999 89999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017467 170 LED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI 241 (371)
Q Consensus 170 ~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v 241 (371)
+++ +||||+||+| +|..|+ ++ +++++|+.||+++++. +...|.++
T Consensus 128 k~i~k~RKkLe~rRLd~D~~K-------------~r~~k~-----~~--eE~~~A~~kfees~E~-------a~~~M~n~ 180 (223)
T cd07615 128 KEIGHHLKKLEGRRLDFDYKK-------------KRQGKI-----PD--EEIRQAVEKFEESKEL-------AERSMFNF 180 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HcCCCC-----cH--HHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 874 9999999998 555553 34 6999999999999998 99999986
Q ss_pred -HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467 242 -EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS 280 (371)
Q Consensus 242 -e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s 280 (371)
+.+.++ +++|.+||+||++||+++++||.+|...+..
T Consensus 181 le~e~e~--~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 181 LENDVEQ--VSQLSVLIEAALDYHRQSTEILEDLQSKLQN 218 (223)
T ss_pred HHcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555 8899999999999999999999999998863
No 6
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=99.94 E-value=3e-25 Score=209.23 Aligned_cols=181 Identities=17% Similarity=0.206 Sum_probs=148.6
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHHHHHh-------------------hcCcchhhhhhhHhHHHhhhhccCCCCCCCCc
Q 017467 67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT-------------------AIGYKHIEAGTKLSEDCCRYGAENNQNINENI 127 (371)
Q Consensus 67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~-------------------~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~ 127 (371)
.++|||.--+|+.+-+ +|++.++.++ .++|||+|. .||+||.+||.++| .+|.
T Consensus 19 f~~l~~~~d~t~~~~~---~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~--~Lg~~M~~~g~~~g---~~S~ 90 (229)
T cd07616 19 LENLLSKAECTKHWTE---KIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPE--LLGQYMIDAGNEFG---PGTA 90 (229)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHH--HHHHHHHHHHHhcC---CCCc
Confidence 5677777777765432 3333333222 268999999 89999999999999 8999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHH
Q 017467 128 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQ 199 (371)
Q Consensus 128 l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~ 199 (371)
||.||+.||+|+++|++++.+|...++++|++||++.+.++++++ +|||||||.| .|+.
T Consensus 91 ~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K-------------~r~~ 157 (229)
T cd07616 91 YGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAK-------------TRLK 157 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHh
Confidence 999999999999999999999999999999999999999999874 9999999999 6666
Q ss_pred hhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017467 200 RVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 277 (371)
Q Consensus 200 K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~ 277 (371)
|.+... .+...++|+.|++||++..+. +...|..+.+ +..+ +.+|..||+|+++||++|.+||.+|...
T Consensus 158 kAk~~~~~~~~e~elr~ae~efees~E~-------a~~~m~~i~~~~~e~--~~~L~~lv~AQl~Yh~~~~e~L~~L~~~ 228 (229)
T cd07616 158 KAKVAEARAAAEQELRITQSEFDRQAEI-------TRLLLEGISSTHAHH--LRCLNDFVEAQMTYYAQCYQYMLDLQKQ 228 (229)
T ss_pred cCCcchhhcchHHHHHHHHHHHHHHHHH-------HHHHHHhhhhcChHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 643322 333347999999999999998 7777877643 3344 7899999999999999999999999865
No 7
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=99.94 E-value=1.3e-25 Score=211.16 Aligned_cols=151 Identities=24% Similarity=0.404 Sum_probs=135.9
Q ss_pred hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 017467 96 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--- 172 (371)
Q Consensus 96 ~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--- 172 (371)
.+||||+|+ .||+||.+||.++| ++|.||.||+.||+|+++|+.++.+++..++++|++||+.++.++++++
T Consensus 59 ~~~~p~~~~--~Lg~~M~~~G~~lg---~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~ 133 (223)
T cd07614 59 NPGYPQSEG--LLGETMIRYGKELG---DESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHH 133 (223)
T ss_pred CCCCCChHh--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999 89999999999999 8999999999999999999999999999999999999999999999875
Q ss_pred -----hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-Hhh
Q 017467 173 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQH 246 (371)
Q Consensus 173 -----~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqq 246 (371)
+|||||||+| +|..|+ ++ ++|+.|.+||+++++. +...|..+-+ ...
T Consensus 134 RKkLe~rRLdyD~~K-------------~r~~k~-----~e--eelr~a~ekFees~E~-------a~~~M~~il~~e~e 186 (223)
T cd07614 134 LKKLEGRRLDFDYKK-------------KRQGKI-----PD--EELRQAMEKFEESKEV-------AETSMHNLLETDIE 186 (223)
T ss_pred HHHHHHHHHHHHHHH-------------HcCCCC-----ch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCChH
Confidence 9999999998 555553 34 6999999999999998 8888987633 344
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467 247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS 280 (371)
Q Consensus 247 rlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s 280 (371)
+ +.+|..||+||++||++|++||.+|...+..
T Consensus 187 ~--~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07614 187 Q--VSQLSALVDAQLDYHRQAVQILDELAEKLKR 218 (223)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 7899999999999999999999999999873
No 8
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=99.93 E-value=5.6e-25 Score=207.06 Aligned_cols=151 Identities=24% Similarity=0.393 Sum_probs=134.6
Q ss_pred hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh---
Q 017467 96 AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--- 172 (371)
Q Consensus 96 ~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--- 172 (371)
..+|||+|+ .||+||.+||.++| ++|.||.||+.||+|+.+|+.++.+++..++++|++||+.++.++++++
T Consensus 59 ~~~~p~~~~--~Lg~~M~~~g~elg---~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~dik~i~k~ 133 (223)
T cd07592 59 STKYPQPEG--LLGEVMLKYGRELG---EDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKDLKEINHH 133 (223)
T ss_pred ccCCCCccc--HHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999 89999999999999 7899999999999999999999999999999999999999999998874
Q ss_pred -----hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-Hhh
Q 017467 173 -----ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQH 246 (371)
Q Consensus 173 -----~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqq 246 (371)
+|||||||.| +|..|. ++ ++|+.|+.||+++++. +...|..+-+ ...
T Consensus 134 RKkLe~rRLdyD~~k-------------~k~~k~-----~e--eEl~~Ae~kfe~s~E~-------a~~~M~~il~~e~e 186 (223)
T cd07592 134 RKKLEGRRLDYDYKK-------------RKQGKG-----PD--EELKQAEEKFEESKEL-------AENSMFNLLENDVE 186 (223)
T ss_pred HHHHHHHHHHHHHHH-------------HhcccC-----ch--HHHHHHHHHHHHHHHH-------HHHHHHHHHhCchH
Confidence 9999999998 554442 34 7999999999999998 8888887533 344
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467 247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVS 280 (371)
Q Consensus 247 rlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~s 280 (371)
+ +..|..||+||++||++|+++|..|...+..
T Consensus 187 ~--~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~ 218 (223)
T cd07592 187 Q--VSQLSALVEAQLDYHRQSAEILEELQSKLQE 218 (223)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 7889999999999999999999999998874
No 9
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=99.92 E-value=5.5e-24 Score=201.01 Aligned_cols=180 Identities=17% Similarity=0.242 Sum_probs=147.2
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHHHHHh--------------------hcCcchhhhhhhHhHHHhhhhccCCCCCCCC
Q 017467 67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT--------------------AIGYKHIEAGTKLSEDCCRYGAENNQNINEN 126 (371)
Q Consensus 67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~--------------------~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~ 126 (371)
..+||+-.-+|+.+-+ +|++..+.++ ..+||+.|. ||+||..||.++| .+|
T Consensus 19 f~~le~~~d~~~~~~e---~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~---Lg~~M~~~g~~lg---~~S 89 (229)
T cd07594 19 FENLLQRADKTKVWTE---KILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQ---LGQAMIEAGNDFG---PGT 89 (229)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHH---HHHHHHHHHhhCC---CCC
Confidence 4567777666665432 3444444444 458999986 9999999999999 789
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHH
Q 017467 127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQ 198 (371)
Q Consensus 127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq 198 (371)
.||.||+.||+|+++|+.++.+++..++++||+||++++.++++++ +||||||+.| .|.
T Consensus 90 ~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k-------------~r~ 156 (229)
T cd07594 90 AYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACK-------------TRV 156 (229)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH
Confidence 9999999999999999999999999999999999999999999875 9999999999 565
Q ss_pred HhhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467 199 QRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 276 (371)
Q Consensus 199 ~K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~ 276 (371)
.|.+... .+....+|+.|++||+++.+. +...|..|-+ +..+ +.+|..||+|+++||++|+++|.+|..
T Consensus 157 ~kAk~~~~~~~~e~elr~Ae~kF~~~~E~-------a~~~M~~i~~~~~~~--~~~L~~lv~AQl~Yh~q~~e~L~~l~~ 227 (229)
T cd07594 157 KKAKSAEAIEQAEQDLRVAQSEFDRQAEI-------TKLLLEGISSTHANH--LRCLRDFVEAQMTYYAQCYQYMDDLQR 227 (229)
T ss_pred hhcCCccchhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5543111 112237999999999999998 8888997643 4455 789999999999999999999999986
Q ss_pred H
Q 017467 277 E 277 (371)
Q Consensus 277 ~ 277 (371)
.
T Consensus 228 ~ 228 (229)
T cd07594 228 Q 228 (229)
T ss_pred h
Confidence 5
No 10
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.90 E-value=1.5e-22 Score=192.45 Aligned_cols=203 Identities=12% Similarity=0.089 Sum_probs=153.0
Q ss_pred eecHHHHHHHHHHHHHHhhhhch-hhhhHHHHHHHHHHhhc-----CcchhhhhhhHhHHHhhhhccCCCCCCCCchhHH
Q 017467 58 VIDEVEMQRHQQLEKLYRSTRGT-KDFQRDLVKVAEVFTAI-----GYKHIEAGTKLSEDCCRYGAENNQNINENILPKA 131 (371)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~-~~~q~~~vr~~~~~~~~-----~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A 131 (371)
|+||. -+++||---.||.+ -+..|.++-|.-|-.++ -.|-+|+ .||+||.+||.++| ++|.||+|
T Consensus 12 ~L~ed----l~~iEkrvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKlpe~--~Ls~~M~es~keLg---~dS~lg~a 82 (257)
T cd07620 12 LLTED----LVLVEQRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKLPLM--ALSISMAESFKDFD---AESSIRRV 82 (257)
T ss_pred hhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhccHh--HHHHHHHHHHhhCC---CcchHHHH
Confidence 45664 45566666566544 44555555554431110 2467888 89999999999999 78999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHH-------
Q 017467 132 AAIYGDAR-KHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVS------- 195 (371)
Q Consensus 132 ~~~~g~a~-~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~------- 195 (371)
| ++|.++ ++|++++++++.+|+++|++||+.++++|+.++ +|+||+||+|-|..-........
T Consensus 83 L-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~ 161 (257)
T cd07620 83 L-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPRSGGRSEEV 161 (257)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccCCccccccc
Confidence 9 999999 999999999999999999999999999999987 99999999996553211100000
Q ss_pred ------HHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhHhhHhhHHHHHHHHHHHHHHHH
Q 017467 196 ------KRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIA 268 (371)
Q Consensus 196 ------rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~qqqrlt~~~L~~~veae~~yhq~~~ 268 (371)
...+|+- .++ ++++.|+.||+++|+. +++.|..+ ..+.++ +++|+.||+++.+||++++
T Consensus 162 ~~~~~~~~~~K~~---~lk--eE~eea~~K~E~~kd~-------~~a~Mynfl~kE~e~--a~~l~~lveaQ~~YHrqsl 227 (257)
T cd07620 162 GEHQGIRRANKGE---PLK--EEEEECWRKLEQCKDQ-------YSADLYHFATKEDSY--ANYFIRLLELQAEYHKNSL 227 (257)
T ss_pred ccccccccccccc---ccH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHH
Confidence 0112210 133 6999999999999998 88888863 444455 7889999999999999999
Q ss_pred HHHHHhHHHHhhhhhc
Q 017467 269 AILGDVEAEMVSEKQR 284 (371)
Q Consensus 269 ~IL~~L~~~l~ser~r 284 (371)
+||+.+..++...-..
T Consensus 228 ~~Le~~l~~~~~~~~~ 243 (257)
T cd07620 228 EFLDKNITELKENHSQ 243 (257)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999998865433
No 11
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.90 E-value=2.7e-22 Score=191.03 Aligned_cols=197 Identities=14% Similarity=0.151 Sum_probs=139.7
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHHHHHh-----------hcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHH
Q 017467 67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFT-----------AIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY 135 (371)
Q Consensus 67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~-----------~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~ 135 (371)
.++|||---+|+.+-| +|++-++.+. ..+|||+ .||+||.+||+++| .+|.||.||..|
T Consensus 17 ~~~le~r~D~~k~~~~---~i~kk~~~~LQpnp~~r~ekr~~k~P~~----~L~q~M~~~g~elg---~~s~lg~aL~~~ 86 (248)
T cd07619 17 LLQVEKRLELVKQVSH---STHKKLTACLQGQQGVDADKRSKKLPLT----TLAQCMVEGAAVLG---DDSLLGKMLKLC 86 (248)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhCCCcHHHHHHhccCCCHH----HHHHHHHHHHHhcC---CCchHHHHHHHH
Confidence 5678887777765543 3444443333 3467765 59999999999999 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHH--HhhccCC
Q 017467 136 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQ--QRVREAP 205 (371)
Q Consensus 136 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq--~K~re~~ 205 (371)
|+|+++|++++.+++..++++|++||++++++|++++ +||||+||.|.|..--.....-..+. .++++
T Consensus 87 gea~~kla~a~~~~d~~i~~~fl~PL~~~le~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~-- 164 (248)
T cd07619 87 GETEDKLAQELILFELQIERDVVEPLYVLAEVEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKA-- 164 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCcc--
Confidence 9999999999999999999999999999999999875 99999999995543110000000000 01100
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhc
Q 017467 206 NPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQR 284 (371)
Q Consensus 206 ~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~ser~r 284 (371)
.+.-+++..|+.+|+..|.. ++..|..+ ....++ +..|..||+||++||+++++||+.+...+......
T Consensus 165 -e~lr~e~E~ae~~~e~~kd~-------~~~~m~~~l~~e~e~--~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~ 234 (248)
T cd07619 165 -DALREEMEEAANRMEICRDQ-------LSADMYSFVAKEIDY--ANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQEA 234 (248)
T ss_pred -HHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01112344455555555545 56666653 444444 66799999999999999999999999988765444
Q ss_pred C
Q 017467 285 K 285 (371)
Q Consensus 285 ~ 285 (371)
|
T Consensus 235 ~ 235 (248)
T cd07619 235 W 235 (248)
T ss_pred c
Confidence 4
No 12
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=99.88 E-value=4.8e-21 Score=179.58 Aligned_cols=150 Identities=20% Similarity=0.263 Sum_probs=126.3
Q ss_pred cchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh------
Q 017467 99 YKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED------ 172 (371)
Q Consensus 99 ~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~------ 172 (371)
.+.++. .||+||..||.++| .+|.||.||+.||+|+++|+.+++.|...++++|++||+..+. +.+++
T Consensus 49 k~~p~~--~Lg~~M~~~g~~lg---~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKk 122 (215)
T cd07593 49 KCLPVE--ALGLVMINHGEEFP---QDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKK 122 (215)
T ss_pred cCChHH--HHHHHHHHHHhhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344566 79999999999999 7999999999999999999999999999999999999998874 77764
Q ss_pred --hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhHh
Q 017467 173 --ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA-QQHRL 248 (371)
Q Consensus 173 --~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~-qqqrl 248 (371)
+||||||+.| -|..|.+... .++ ++|+.|++||++.++. +...|..+-+ ...+
T Consensus 123 Le~rRLdyD~~k-------------sk~~kak~~~~~~e--eElr~Ae~kfees~E~-------a~~~M~~i~~~e~e~- 179 (215)
T cd07593 123 LESRRLAYDAAL-------------TKSQKAKKEDSRLE--EELRRAKAKYEESSED-------VEARMVAIKESEADQ- 179 (215)
T ss_pred HHHHHHHHHHHH-------------HHHHhccccchhHH--HHHHHHHHHHHHHHHH-------HHHHHHHHHhcChHH-
Confidence 8999999888 3333332221 344 7999999999999998 8888987643 3455
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467 249 TFQRLVAMVEGEKNYHLRIAAILGDVEAEM 278 (371)
Q Consensus 249 t~~~L~~~veae~~yhq~~~~IL~~L~~~l 278 (371)
+.+|..||+||++||++|.+||.+|....
T Consensus 180 -~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~ 208 (215)
T cd07593 180 -YRDLTDLLDAELDYHQQSLDVLREVRQSW 208 (215)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999988753
No 13
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=99.88 E-value=6.6e-21 Score=181.62 Aligned_cols=184 Identities=18% Similarity=0.213 Sum_probs=144.4
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHHHHH-----------hhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHH
Q 017467 67 HQQLEKLYRSTRGTKDFQRDLVKVAEVF-----------TAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY 135 (371)
Q Consensus 67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~-----------~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~ 135 (371)
.++||+---+||.+-+ +|++.++++ +..+| +|. .||+||.+||.++| .+|.||.||..|
T Consensus 17 ~~~le~r~D~~k~~~~---~i~k~~~~~lqpnp~~r~ek~~kk~--p~~--~Lgq~M~e~~~~lg---~~s~~g~aL~~~ 86 (246)
T cd07618 17 LLQIERRLDTVRSVSH---NVHKRLIACFQGQVGTDAEKRHKKL--PLT--ALAQNMQEGSAQLG---EESLIGKMLDTC 86 (246)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHcCCChHHHHHHHhccC--CHH--HHHHHHHHHHhcCC---CCccHHHHHHHH
Confidence 4678887777775543 444444444 23456 477 79999999999999 799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC--
Q 017467 136 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-- 205 (371)
Q Consensus 136 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-- 205 (371)
|+++++|++++.+++..++++|++||++++.++++++ +||||+||.|. |..+...++
T Consensus 87 gea~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D~~K~-------------r~~~a~~~~~~ 153 (246)
T cd07618 87 GDAENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWDSARG-------------RYNQAHKSSGT 153 (246)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHHHHHH-------------HHHhccccCcc
Confidence 9999999999999999999999999999999998765 89999999993 333321100
Q ss_pred C--------cccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467 206 N--------PENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 276 (371)
Q Consensus 206 ~--------~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~ 276 (371)
| +-..+++..|+.||++++.. +++.|..+ ....+. +++|..+|+++++||+++++||+.+..
T Consensus 154 ~~~~~~~K~~~l~ee~e~a~~k~E~~kD~-------~~~dm~~~l~~e~e~--~~~l~~lv~aQ~eYHr~a~e~Le~~~p 224 (246)
T cd07618 154 NFQAMPSKIDMLKEEMDEAGNKVEQCKDQ-------LAADMYNFASKEGEY--AKFFVLLLEAQADYHRKALAVIEKVLP 224 (246)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 10124789999999999998 55566643 333344 789999999999999999999999999
Q ss_pred HHhhhh
Q 017467 277 EMVSEK 282 (371)
Q Consensus 277 ~l~ser 282 (371)
.+....
T Consensus 225 ~i~~~~ 230 (246)
T cd07618 225 EIQAHQ 230 (246)
T ss_pred HHHHHH
Confidence 887653
No 14
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=99.84 E-value=2.4e-19 Score=170.99 Aligned_cols=158 Identities=18% Similarity=0.246 Sum_probs=132.9
Q ss_pred chhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh-------
Q 017467 100 KHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED------- 172 (371)
Q Consensus 100 ~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~------- 172 (371)
+-++. .||.+|..||.++| .+++||.||..||+|++.|++++.+++..+.++|++||+.+..++++++
T Consensus 56 k~p~~--~Lg~~M~~~g~~l~---~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkL 130 (244)
T cd07595 56 KLPEY--GLAQSMLESSKELP---DDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEIPNIQKQKKRL 130 (244)
T ss_pred cCcHH--HHHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566 79999999999999 7899999999999999999999999999999999999999999998875
Q ss_pred -hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccC-------C-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017467 173 -ARHLAQRYSRMRQEAETQAVEVSKRQQRVREA-------P-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA 243 (371)
Q Consensus 173 -~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~-------~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~ 243 (371)
.||||||+.| +|..|.+.+ . .+..-++++.|+.||+++++. +...|..+-+
T Consensus 131 e~~RLd~D~~k-------------~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~-------~~~~M~~~l~ 190 (244)
T cd07595 131 SKLVLDMDSAR-------------SRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDA-------LATDMYEFLA 190 (244)
T ss_pred hhhhHHHHHHH-------------HHHHhccccccccccccccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 8999999999 555443311 0 121136899999999999998 8899997533
Q ss_pred -HhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhc
Q 017467 244 -QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQR 284 (371)
Q Consensus 244 -qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~ser~r 284 (371)
..+. +++|..||+||++||++++++|+.+...+..-...
T Consensus 191 ~E~e~--~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~ 230 (244)
T cd07595 191 KEAEI--ASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQ 230 (244)
T ss_pred ccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2444 78999999999999999999999999998764333
No 15
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.82 E-value=3.2e-19 Score=169.98 Aligned_cols=211 Identities=17% Similarity=0.226 Sum_probs=151.2
Q ss_pred hhHHHhhhccCCCCCCccc--eecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhh-hhhHhHHHhhh
Q 017467 39 FQAVIKQFSASGYERSDVM--VIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEA-GTKLSEDCCRY 115 (371)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~-~~~l~e~~~kY 115 (371)
+..|-+.|..-||--.-++ .+.+---.-+.+..-|=..| +....|.-++- ..++.+++=. -.-||.+|..+
T Consensus 17 ~l~vt~~ye~esYDYP~n~~es~~~~~~~~~~k~~~l~~~t-~~~e~~~~l~~-----~~~~~~~pkTl~~aLs~~m~~~ 90 (242)
T cd07600 17 ILKVTKTYENESYDYPPNLTESISDFSKTIGSKVSELSKAT-SPTEAQKVLLG-----TPAPAKLPKTLNHALSRAALAS 90 (242)
T ss_pred HHHHHHhhcccCCCCCCCchHHHHHHHHhhHHHHHHHhhcC-ChhhhhhhhcC-----CCCCCCCCCcHHHHHHHHHHHH
Confidence 4477788887777321111 12222222345555444444 34455655432 2222223222 23599999999
Q ss_pred hccCCCC--CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhh
Q 017467 116 GAENNQN--INENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQ 185 (371)
Q Consensus 116 g~e~~~~--~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq 185 (371)
|.++|.+ .++++||.||+.||+|+.+|++.|..+|..++++|++||++++.++++++ +||||||+.|
T Consensus 91 ~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K--- 167 (242)
T cd07600 91 SLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTAR--- 167 (242)
T ss_pred HHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 9999921 22889999999999999999999999999999999999999999999874 9999999999
Q ss_pred HHHHHHHHHHHHHHhhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHH
Q 017467 186 EAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYH 264 (371)
Q Consensus 186 ~~e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yh 264 (371)
.|+.|.+... .++.-.++++||.+|.+.++. |...|..+-+.-.. ++.|..||+||+.||
T Consensus 168 ----------~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~-------a~~~M~~il~~~e~--i~~L~~fv~AQl~Yh 228 (242)
T cd07600 168 ----------AELKSAEPAEKQEAARVEVETAEDEFVSATEE-------AVELMKEVLDNPEP--LQLLKELVKAQLAYH 228 (242)
T ss_pred ----------HHHHhccccccccchHHHHHHHHHHHHHhHHH-------HHHHHHHHHhhhHH--HHHHHHHHHHHHHHH
Confidence 4554442111 122347888999999999987 77888876443333 788999999999999
Q ss_pred HHHHHHHHHhHHH
Q 017467 265 LRIAAILGDVEAE 277 (371)
Q Consensus 265 q~~~~IL~~L~~~ 277 (371)
++|+++|.+|...
T Consensus 229 ~~~~e~L~~l~~~ 241 (242)
T cd07600 229 KTAAELLEELLSV 241 (242)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998753
No 16
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=99.70 E-value=2e-15 Score=143.54 Aligned_cols=278 Identities=20% Similarity=0.246 Sum_probs=189.3
Q ss_pred HHHHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcC-cchhh----------------hhhhHhHHHhhhhccCCCCCC
Q 017467 62 VEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIG-YKHIE----------------AGTKLSEDCCRYGAENNQNIN 124 (371)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~-~~q~E----------------~~~~l~e~~~kYg~e~~~~~~ 124 (371)
-||--| +|+|..-.-..|..-+.|.+..|++..+- .--+| -+..|+..|.--|.|+| .
T Consensus 33 TELDaH--fENLL~rAd~Tk~wTekil~qtEvlLQPNP~aR~EEf~YEKLdrK~psR~nN~ElL~qyM~dAg~efG---p 107 (375)
T KOG3725|consen 33 TELDAH--FENLLQRADKTKDWTEKILSQTEVLLQPNPTARMEEFFYEKLDRKKPSRQNNLELLSQYMTDAGEEFG---P 107 (375)
T ss_pred hhHHHH--HHHHHHHhhhhhHHHHHHHHhhheecCCCcchhHHHHHHHHHhccCccccCCHHHHHHHHHHHHHhcC---C
Confidence 345444 88998877788889999999999986542 11111 12358999999999999 7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhhhhHHHHHHHHHHH
Q 017467 125 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRMRQEAETQAVEVSK 196 (371)
Q Consensus 125 ~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~Rq~~e~~~~ev~r 196 (371)
+.+.|.||+.+|++.+++...--.|...-..|||-|||++..||.+-+ .+|||-|--+-|-. -+.++|..
T Consensus 108 tTpYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEGD~KTI~KERklLqnkRLDLDAcKsRLK-KAKaae~q- 185 (375)
T KOG3725|consen 108 TTPYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEGDMKTIQKERKLLQNKRLDLDACKSRLK-KAKAAELQ- 185 (375)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhhcccChHHHHHHHH-Hhhhhhhh-
Confidence 889999999999999999999999999999999999999999998754 66776554432221 11112210
Q ss_pred HHHhhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHhhHhhHhhHHHHHHHHHHHHHHHHH
Q 017467 197 RQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIE------AQQHRLTFQRLVAMVEGEKNYHLRIAA 269 (371)
Q Consensus 197 Rq~K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve------~qqqrlt~~~L~~~veae~~yhq~~~~ 269 (371)
-+|.+. ..- ..+.+||+.+.-. -+++++.++-.---+| +.+ +..|..||+++..|+.+|.+
T Consensus 186 ---~~rN~~~s~~--~~ie~aEqelRva---Q~EFDrQaEiTrLLLEGIsstH~nh----LrCL~dFVeaQmtyYAQcyq 253 (375)
T KOG3725|consen 186 ---TVRNSKTSGG--FTIEQAEQELRVA---QAEFDRQAEITRLLLEGISSTHNNH----LRCLRDFVEAQMTYYAQCYQ 253 (375)
T ss_pred ---ccccccccCc--chHhHHHHHHHHH---HHHHhHHHHHHHHHHHhhhhhhhhH----HHHHHHHHHHHHHHHHHHHH
Confidence 012211 111 2444555433322 2233333332221112 111 56789999999999999999
Q ss_pred HHHHhHHHHhhhhhcCCC-----CCCCCCCCC-----------C-----cccc---------cceEEEEecCCCCCCCCC
Q 017467 270 ILGDVEAEMVSEKQRKES-----APPVIPSEN-----------S-----SQKA---------VYFLAEAIHPFTAASEKE 319 (371)
Q Consensus 270 IL~~L~~~l~ser~r~es-----~~pp~~~~s-----------~-----s~~~---------~~~~arALydfea~~~~E 319 (371)
.+-+|+.++.+-.....+ ++.|.|+++ + .+|. ....++++|||++..+.|
T Consensus 254 ~MlDLQkqLg~fps~~~s~~~~~s~sp~ps~~pt~aaa~a~a~pSgl~i~~P~~ls~l~e~sgtrkArVlyDYdAa~s~E 333 (375)
T KOG3725|consen 254 LMLDLQKQLGGFPSFRGSSAILVSNSPDPSNGPTMAAAIAAAKPSGLLITSPDDLSDLKECSGTRKARVLYDYDAALSQE 333 (375)
T ss_pred HHHHHHHHhcCCcccccccccccCCCCCCCCCchHHHHHhccCCcceeecCcchhhhHHhhccccceeeeecccccchhh
Confidence 999999987653211111 111222111 0 0111 234689999999999999
Q ss_pred ccCCCCCEEEEEE--eCCCCeeEEEeCCeeeEecCCceeec
Q 017467 320 LSLGVGDYVVVRK--VSPSGWSEGECKGKAGWFPSANVEKR 358 (371)
Q Consensus 320 Lsf~~GDiI~Vl~--~~d~GWweGe~~Gk~G~FPsnYVE~i 358 (371)
|++-.+++|.|.+ -.|.+|..|+.+++.|-+|..|++.+
T Consensus 334 lslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 334 LSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred hhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 9999999999965 45778999999999999999999754
No 17
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=4.2e-13 Score=136.39 Aligned_cols=169 Identities=19% Similarity=0.257 Sum_probs=133.1
Q ss_pred HHHHHhhhhchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 017467 70 LEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQ 146 (371)
Q Consensus 70 ~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~ 146 (371)
..++...-..++++||| |..+|.|++....+-.|.+..+ |..+|. +..-. -..+..++..|
T Consensus 36 ~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~ei------y~p~~~----g~~~l------~~v~~~~d~l~ 99 (460)
T KOG3771|consen 36 ERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEI------YEPDWP----GRDYL------QAVADNDDLLW 99 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcccc----cHHHH------HHHHHHHHHHH
Confidence 44555556789999999 9999999998876555553333 888886 43322 22456788899
Q ss_pred HHHHHHHHhhhhhHHHHhhhcCh------hhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHH
Q 017467 147 EDFNRLLSSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARM 220 (371)
Q Consensus 147 ~~l~~~~~~~~~~PL~~~~~~~~------~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl 220 (371)
.+|+..|.+++++||..+...+| +.++|+|. |||++||.++...... + .+ ..|+..||+.|
T Consensus 100 ~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~-DyD~~r~~~~kvq~~k-------~----kd-~~k~~KAeeEl 166 (460)
T KOG3771|consen 100 KDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLV-DYDSARHSFEKLQAKK-------K----KD-EAKLAKAEEEL 166 (460)
T ss_pred HHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhh-hhHHHHHHHHHHHHhc-------C----CC-hhhhHHHHHHH
Confidence 99999999999999999998886 35799999 9999999987765541 2 13 36888899999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHH
Q 017467 221 QELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAA 269 (371)
Q Consensus 221 ~elk~~m~~lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~ 269 (371)
+..+..+..++.++..-|..+.+ .|+.+ .-+.+++-.+..||+....
T Consensus 167 ~~Aq~~fE~lN~~L~eELP~L~~--sRv~f~vp~Fqsl~~~q~vf~~Emsk 215 (460)
T KOG3771|consen 167 EKAQQVFEELNNELLEELPALYS--SRVGFFVPTFQSLFNLQLVFHKEMSK 215 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 66553 4577788889999988833
No 18
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.51 E-value=5.9e-12 Score=110.55 Aligned_cols=188 Identities=20% Similarity=0.313 Sum_probs=150.3
Q ss_pred hhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017467 80 TKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLD 159 (371)
Q Consensus 80 ~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~ 159 (371)
.++.=+.|++.+++++..+.........|++.|.++|...+ ...+..++.++..+|++.+.++..++.+...+...|++
T Consensus 5 ~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~ 83 (194)
T cd07307 5 LEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELP-DLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIE 83 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666789999999999987 22222499999999999999999999999999999999
Q ss_pred HHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 017467 160 PLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALA 239 (371)
Q Consensus 160 PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~ 239 (371)
||+.+..++++.. +..-.+|++.|.+++.....+.+-+.+.+ + ..++..+++++++.+..+..+..++...|.
T Consensus 84 pL~~~~~~~~~~~-~~~~k~~~~~~~~yd~~~~k~~~~~~~~~-----~-~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~ 156 (194)
T cd07307 84 PLKEYLKKDLKEI-KKRRKKLDKARLDYDAAREKLKKLRKKKK-----D-SSKLAEAEEELQEAKEKYEELREELIEDLN 156 (194)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccC-----C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998776644 66666788888888777777654433321 1 368999999999999999999999999999
Q ss_pred HHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467 240 AIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 275 (371)
Q Consensus 240 ~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~ 275 (371)
.+...........|..|++++..||.++.++++++.
T Consensus 157 ~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~ 192 (194)
T cd07307 157 KLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL 192 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 987755555578899999999999999999987764
No 19
>smart00721 BAR BAR domain.
Probab=99.45 E-value=2.3e-11 Score=112.98 Aligned_cols=209 Identities=19% Similarity=0.236 Sum_probs=139.8
Q ss_pred HHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhh-chhhhhHHHHHHH------HHHhhcCcchhhhhhhHhHHHh
Q 017467 41 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTR-GTKDFQRDLVKVA------EVFTAIGYKHIEAGTKLSEDCC 113 (371)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~vr~~------~~~~~~~~~q~E~~~~l~e~~~ 113 (371)
.|.-.+|++ +-..+||.= ..||+-+..++ ..++++|++-..+ ++...+...-.+ .+++.+.
T Consensus 12 ~~~ek~G~~-----e~T~~D~~f----~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~---~l~~~~~ 79 (239)
T smart00721 12 KVGEKVGKA-----EKTKLDEDF----EELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSK---SLGEVYE 79 (239)
T ss_pred HHHHHhCCC-----CcCcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHH---HHHHHhc
Confidence 566677722 334446653 23444444433 2345555533333 333332222223 3555555
Q ss_pred h--hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhh--------hhhhhhhHHhh
Q 017467 114 R--YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLED--------ARHLAQRYSRM 183 (371)
Q Consensus 114 k--Yg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~--------~R~L~~dy~r~ 183 (371)
- +|.+.+ .++.+|.++..+|+++..++..+..+ ..+..+|+.|+.+....+..+. .++|| ||+.
T Consensus 80 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lD--yD~~ 153 (239)
T smart00721 80 GGDDGEGLG---ADSSYGKALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLD--YDSA 153 (239)
T ss_pred CCCCccccC---chhHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHH--HHHH
Confidence 4 455555 67789999999999999999999999 9999999999999998887654 34443 4444
Q ss_pred hhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHH
Q 017467 184 RQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNY 263 (371)
Q Consensus 184 Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~y 263 (371)
|..++... +..+ .+.. .+|..|+++|+..++.+..++.++...|..+.+....+-+..|.+++.++..|
T Consensus 154 ~~kl~~~~-----~~~~-----~~~~-~kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y 222 (239)
T smart00721 154 RHKLKKAK-----KSKE-----KKKD-EKLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNF 222 (239)
T ss_pred HHHHHHHH-----Hhcc-----CChh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 44433221 1111 1221 38888999999999999999999999999887643333367899999999999
Q ss_pred HHHHHHHHHHhHHHH
Q 017467 264 HLRIAAILGDVEAEM 278 (371)
Q Consensus 264 hq~~~~IL~~L~~~l 278 (371)
|.++.+++.+|...+
T Consensus 223 ~~~~~~~l~~l~~~l 237 (239)
T smart00721 223 HRESYKLLQQLQQQL 237 (239)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988765
No 20
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.45 E-value=1.3e-13 Score=100.64 Aligned_cols=49 Identities=37% Similarity=0.626 Sum_probs=45.4
Q ss_pred EecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCcee
Q 017467 308 AIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVE 356 (371)
Q Consensus 308 ALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE 356 (371)
|+|+|.+..++||+|++||+|.|+...++|||.|+.+|+.||||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 6899999999999999999999999999999999999999999999986
No 21
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.43 E-value=5e-11 Score=108.26 Aligned_cols=215 Identities=19% Similarity=0.325 Sum_probs=135.7
Q ss_pred HHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHH---HHHHHhhcCcchhhhhhhHhHHHhhhhc
Q 017467 41 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVK---VAEVFTAIGYKHIEAGTKLSEDCCRYGA 117 (371)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr---~~~~~~~~~~~q~E~~~~l~e~~~kYg~ 117 (371)
.|...+|++ +...+|+.=-....++..+.. ..+++++++-+ .++.+...+.-.......||++|..+|.
T Consensus 11 ~~~~k~g~~-----~~t~~D~~f~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 82 (229)
T PF03114_consen 11 RVKQKLGKS-----EKTEIDEEFEELEEKFKQLEE---SIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGS 82 (229)
T ss_dssp HHHHHHTSH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC-----CCCcCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhc
Confidence 666667622 233357642223344444433 34566666443 3444444433111222379999999999
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHH
Q 017467 118 ENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKR 197 (371)
Q Consensus 118 e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rR 197 (371)
+.+ .++.||.++..||+++..|+..+..+...+.+.|++||+.+. ...++...... .+++.|.+++.....+
T Consensus 83 ~~~---~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~-~~~~~i~~~~k-kr~~~~ldyd~~~~k~--- 154 (229)
T PF03114_consen 83 EFS---DDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFL-KEFKEIKKLIK-KREKKRLDYDSARSKL--- 154 (229)
T ss_dssp CTS---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHH---
T ss_pred ccc---ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHH-HHHHHHHHHHHHHHHH---
Confidence 987 566799999999999999999999999999999999999999 66655422222 2333333333333333
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 017467 198 QQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAE 277 (371)
Q Consensus 198 q~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~ 277 (371)
.+.++..... .+ ++++++.+..+..++......|+.+......+....|..+++++..||+++.++|.+|...
T Consensus 155 -~k~~~~~~~~--~~----~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~ 227 (229)
T PF03114_consen 155 -EKLRKKKSKS--SK----EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQ 227 (229)
T ss_dssp -HHCHTTSSBT--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHhhhccc--cc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222211111 01 4444444444444555588888887653333333779999999999999999999999876
Q ss_pred H
Q 017467 278 M 278 (371)
Q Consensus 278 l 278 (371)
+
T Consensus 228 l 228 (229)
T PF03114_consen 228 L 228 (229)
T ss_dssp H
T ss_pred h
Confidence 5
No 22
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=99.34 E-value=1.5e-10 Score=108.64 Aligned_cols=170 Identities=22% Similarity=0.294 Sum_probs=139.0
Q ss_pred chhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017467 79 GTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSS 155 (371)
Q Consensus 79 ~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~ 155 (371)
+++.+||| |..+|.|+..++..-.|....| |+.+|. .-+ ++..++..++..|.+|...+.+
T Consensus 27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~l------Y~p~~~---~~~-------~~~~v~e~~d~~~~~l~~~l~~ 90 (211)
T cd07588 27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKEL------YEPDWP---GRE-------HLASIFEQLDLLWNDLEEKLSD 90 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCccc---cHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 57899998 8899999988888777776555 888874 112 3466788999999999999999
Q ss_pred hhhhHHHHhhhcChh------hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHH
Q 017467 156 QVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAI 229 (371)
Q Consensus 156 ~~~~PL~~~~~~~~~------e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~ 229 (371)
.|++||..++.-.|- +++|+|. ||||.|+.++.... |. ..| ..||.+||++|+..+..+..
T Consensus 91 ~Vl~Pl~~~~s~f~~i~k~I~KR~~Kll-DYDr~r~~~~kL~~-------K~----~kd-e~KL~kae~el~~Ak~~Ye~ 157 (211)
T cd07588 91 QVLGPLTAYQSQFPEVKKRIAKRGRKLV-DYDSARHNLEALKA-------KK----KVD-DQKLTKAEEELQQAKKVYEE 157 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH-hHHHHHHHHHHHHh-------cc----ccc-HhhHHHHHHHHHHHHHHHHH
Confidence 999999999987763 5699999 99999998765532 21 123 47999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467 230 LGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGDVEAEMV 279 (371)
Q Consensus 230 lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~IL~~L~~~l~ 279 (371)
++.++...|+.+.+ .|+.+ .-+.+++.+|..||.++..+..+|..-|.
T Consensus 158 lN~~L~~ELP~L~~--~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~ 207 (211)
T cd07588 158 LNTELHEELPALYD--SRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMD 207 (211)
T ss_pred HHHHHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998877 34332 45888999999999999999998887664
No 23
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=99.31 E-value=2e-10 Score=107.67 Aligned_cols=178 Identities=13% Similarity=0.199 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhhhhchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 017467 65 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH 141 (371)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~ 141 (371)
.+.+.||. +++.+||| |..+|.|+......-.|.+..+ ||.+|+ ..+.+ ......
T Consensus 19 ~rf~~le~------~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~------Y~~~~~---~~~~~-------~~v~e~ 76 (211)
T cd07612 19 MNLNMQQS------DGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDI------YEPDWD---GHEDL-------GAIVEG 76 (211)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCCcC---cccHH-------HHHHhc
Confidence 45555653 68999999 8999999999888777775555 999998 33333 344566
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHH
Q 017467 142 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA 215 (371)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~ 215 (371)
++..|.+++..+.+.||+||..+..-.|- +++|.|. |||+.|+.++..... + + -| ..||..
T Consensus 77 ~d~~~~~~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~Kll-DYD~~R~~~~kl~~k------~-~----kD-~~KL~k 143 (211)
T cd07612 77 EDLLWNDYEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLV-DYDSARHHLEALQNA------K-K----KD-DAKIAK 143 (211)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhc------c-c----cc-HHHHHH
Confidence 77899999999999999999999988773 5699999 999999997665431 1 1 13 479999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467 216 AEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGDVEAEMV 279 (371)
Q Consensus 216 Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~IL~~L~~~l~ 279 (371)
||+.|+..+..+..++.++..-|+.+.+ .|+.+ .-+.+++..|..||.+...+...|..-|.
T Consensus 144 Ae~el~~Ak~~ye~lN~~L~~ELP~L~~--~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~ 207 (211)
T cd07612 144 AEEEFNRAQVVFEDINRELREELPILYD--SRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMK 207 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 56553 56889999999999999999888877653
No 24
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.31 E-value=3.6e-12 Score=94.55 Aligned_cols=54 Identities=39% Similarity=0.672 Sum_probs=48.6
Q ss_pred EEEEecCCCCCCCCCccCCCCCEEEEE-EeCCCCeeEEEeCCeeeEecCCceeec
Q 017467 305 LAEAIHPFTAASEKELSLGVGDYVVVR-KVSPSGWSEGECKGKAGWFPSANVEKR 358 (371)
Q Consensus 305 ~arALydfea~~~~ELsf~~GDiI~Vl-~~~d~GWweGe~~Gk~G~FPsnYVE~i 358 (371)
.++|++||.+..+++|+|.+||+|.|+ ...+++||.|+.+|+.||||.+||+++
T Consensus 1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 479999999999999999999999999 888889999999999999999999864
No 25
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.6e-09 Score=115.40 Aligned_cols=59 Identities=39% Similarity=0.726 Sum_probs=53.2
Q ss_pred ceEEEEecCCCCCCCCCccCCCCCEEEEEE--eCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467 303 YFLAEAIHPFTAASEKELSLGVGDYVVVRK--VSPSGWSEGECKGKAGWFPSANVEKRQRI 361 (371)
Q Consensus 303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~--~~d~GWweGe~~Gk~G~FPsnYVE~i~~l 361 (371)
...|+|+|.|++.+++|++|.+||+|.|.. ...+||..|+.+|+.||||+|||+.+...
T Consensus 693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~ 753 (1118)
T KOG1029|consen 693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAV 753 (1118)
T ss_pred eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccC
Confidence 567999999999999999999999999864 45889999999999999999999987543
No 26
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=99.24 E-value=1.3e-09 Score=102.18 Aligned_cols=178 Identities=17% Similarity=0.240 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhhhhchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 017467 65 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH 141 (371)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~ 141 (371)
.+.+.||+ +++.+||| |..+|.|+.+....-.|.+..+ ||..|+ . .+.. ...| ..
T Consensus 19 rrf~~lE~------~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~------Y~p~~~-g--~~~~----~~~~---~~ 76 (211)
T cd07611 19 QNFKRQET------EGTRLQRELRAYLAAIKGMQEASKKLTESLHEV------YEPDWY-G--RDDV----KTIG---EK 76 (211)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCccc-c--cchH----HHHH---hh
Confidence 45566664 67899999 9999999999988888887766 999984 1 1211 1223 55
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHH
Q 017467 142 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA 215 (371)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~ 215 (371)
+..+|.+|+..+..++++|+..++.-.|- +++|.|. |||++|+.++.... |. ..| ..||..
T Consensus 77 ~d~~~~dl~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKll-DYD~~r~~~~kL~~-------k~----~kD-e~KL~k 143 (211)
T cd07611 77 CDLLWEDFHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLV-DYDSARHHLEALQT-------SK----RKD-EGRIAK 143 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhc-------cc----ccc-HHHHHH
Confidence 66799999999999999999999987763 5699999 99999998765542 21 124 589999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467 216 AEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGDVEAEMV 279 (371)
Q Consensus 216 Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~IL~~L~~~l~ 279 (371)
||+-|+..+..+..+|..+..-|+.+.+ .|+.+ ..+.+++..|..||.+...+-..|..-|.
T Consensus 144 Ae~el~~Ak~~ye~lN~~Lk~ELP~L~~--~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~ 207 (211)
T cd07611 144 AEEEFQKAQKVFEEFNVDLQEELPSLWS--RRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMT 207 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 55543 56889999999999999998877776553
No 27
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.22 E-value=2.6e-09 Score=101.21 Aligned_cols=185 Identities=18% Similarity=0.307 Sum_probs=143.7
Q ss_pred HHHHHHHHHHhhhhchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHH
Q 017467 65 QRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKH 141 (371)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~ 141 (371)
++.+.||+ +++++||| |+.+|.|+..+..|-.|. |+++ |+.+. +..+..+.-.|-.++..
T Consensus 18 ~rf~~lE~------~~~kL~Ke~K~Y~dav~~m~~a~~~is~~---l~~~---~~~~~-----~~~~~~~~e~y~~~~~~ 80 (225)
T cd07590 18 QKLQQLES------TTKKLYKDMKKYIEAVLALSKAEQRLSQD---LASG---PLCED-----NDELRNLVEALDSVTTQ 80 (225)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHhc---ccCCC-----ChHHHHHHHHHHHHHHH
Confidence 45555554 57899999 888888888777555555 4442 54332 23466677788889999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhcChh------hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHH
Q 017467 142 VEKEQEDFNRLLSSQVLDPLRAMITGAPL------EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA 215 (371)
Q Consensus 142 ~~~~~~~l~~~~~~~~~~PL~~~~~~~~~------e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~ 215 (371)
|.+....++..+...|++||..+..-+|. +++|.|. |||++|+.++... .|.+.+ + +..||.+
T Consensus 81 l~~~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~-DYD~~r~~~~kl~-------~K~~k~--~-~~~KL~k 149 (225)
T cd07590 81 LDKTVQELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQ-EYERLQAKVEKLA-------EKEKTG--P-NLAKLEQ 149 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH-------hCccCC--h-hHHHHHH
Confidence 99989999999999999999999998874 5688997 9999998876443 232211 1 1379999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467 216 AEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILGDVEAEMV 279 (371)
Q Consensus 216 Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~IL~~L~~~l~ 279 (371)
||+.|+..+..+..++..+..-|+.+.+ .|+.+ .-+.+|+-.|+.||.....++.+|...+-
T Consensus 150 ae~el~~Ak~~ye~~N~~L~~ELP~l~~--~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d 213 (225)
T cd07590 150 AEKALAAARADFEKQNIKLLEELPKFYN--GRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLD 213 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH--HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998877 34332 45888999999999999999999988754
No 28
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=99.18 E-value=8.4e-12 Score=127.34 Aligned_cols=56 Identities=36% Similarity=0.734 Sum_probs=53.2
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 359 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~ 359 (371)
-.++|-|.|.+.+.+||+|.+||+|+|+...+.|||+|..+|+.||||+|||.++.
T Consensus 18 LvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik 73 (661)
T KOG2070|consen 18 LVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK 73 (661)
T ss_pred eEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence 35899999999999999999999999999999999999999999999999999864
No 29
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=99.10 E-value=2.1e-10 Score=82.74 Aligned_cols=54 Identities=39% Similarity=0.588 Sum_probs=50.1
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC-CeeeEecCCceee
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANVEK 357 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~-Gk~G~FPsnYVE~ 357 (371)
..++|+|+|.+..+++|+|.+||.|.|+...++|||.++.. |+.||||.+|++.
T Consensus 3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEE
Confidence 45799999999999999999999999999888999999976 9999999999975
No 30
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=99.09 E-value=1.6e-10 Score=111.15 Aligned_cols=97 Identities=29% Similarity=0.417 Sum_probs=69.7
Q ss_pred HHHHHHHhHHHHhhhhhcCCCCCC--CCCCCCCc-cc---cc-ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCee
Q 017467 267 IAAILGDVEAEMVSEKQRKESAPP--VIPSENSS-QK---AV-YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWS 339 (371)
Q Consensus 267 ~~~IL~~L~~~l~ser~r~es~~p--p~~~~s~s-~~---~~-~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWw 339 (371)
-..|...|...+-..-.+..+++. ++|+.... ++ .. ...+.+-|.|.++.++||++.+|+.|.|.+++.+|||
T Consensus 64 ~~si~knlkd~~g~kt~~k~s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWW 143 (379)
T KOG4226|consen 64 KGSIVKNLKDTLGLKTRRKTSARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWW 143 (379)
T ss_pred hhHHHHhhhhccccccccCCCccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcce
Confidence 445777777776663333333332 22222111 11 01 1137888999999999999999999999999999999
Q ss_pred EEEeCCeeeEecCCceeeccCCCC
Q 017467 340 EGECKGKAGWFPSANVEKRQRIPV 363 (371)
Q Consensus 340 eGe~~Gk~G~FPsnYVE~i~~lP~ 363 (371)
.|..+|..||||+|||++....+.
T Consensus 144 rG~~ng~VGWFPSNYv~E~~ds~~ 167 (379)
T KOG4226|consen 144 RGSYNGQVGWFPSNYVTEEVDSAA 167 (379)
T ss_pred ecccCCeeccccccceehhccccc
Confidence 999999999999999998766543
No 31
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.06 E-value=2.5e-10 Score=82.34 Aligned_cols=46 Identities=39% Similarity=0.666 Sum_probs=42.1
Q ss_pred EEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeC--CeeeEecC
Q 017467 307 EAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECK--GKAGWFPS 352 (371)
Q Consensus 307 rALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~--Gk~G~FPs 352 (371)
+|+|+|.+..++||+|.+||.|.|++..+++||.++.. |+.||||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 58999999999999999999999999999999999973 79999995
No 32
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=99.05 E-value=1.3e-10 Score=123.13 Aligned_cols=55 Identities=33% Similarity=0.584 Sum_probs=52.6
Q ss_pred ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceee
Q 017467 303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357 (371)
Q Consensus 303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~ 357 (371)
.+.|.|+|||.+++.+||+|++||+|.++.+.++|||.|..+|+.||||.+||++
T Consensus 1051 ~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1051 NPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred CcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence 3689999999999999999999999999999999999999999999999999975
No 33
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=99.03 E-value=5.7e-10 Score=79.63 Aligned_cols=51 Identities=41% Similarity=0.624 Sum_probs=47.5
Q ss_pred EEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCC-eeeEecCCcee
Q 017467 306 AEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKG-KAGWFPSANVE 356 (371)
Q Consensus 306 arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~G-k~G~FPsnYVE 356 (371)
++|+|+|.+..+++|+|.+||.+.|++..++|||.++..+ +.||||.+|++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~ 53 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE 53 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence 6899999999999999999999999998889999999765 99999999986
No 34
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=99.02 E-value=1.3e-10 Score=116.27 Aligned_cols=57 Identities=33% Similarity=0.445 Sum_probs=53.5
Q ss_pred ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467 303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 359 (371)
Q Consensus 303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~ 359 (371)
...+||||||++..++||+|+.||+|+|+...+++||.|++.+..|+||+|||....
T Consensus 215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l 271 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL 271 (462)
T ss_pred chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence 346899999999999999999999999999999999999999999999999998754
No 35
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=3.7e-10 Score=120.07 Aligned_cols=54 Identities=35% Similarity=0.563 Sum_probs=51.0
Q ss_pred EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR 358 (371)
Q Consensus 305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i 358 (371)
.+.++|||.+++++||+|++||+|.|+.+.++.||.|+++|..|+||+|||...
T Consensus 1055 qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1055 QVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred eeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence 467999999999999999999999999999999999999999999999999654
No 36
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=98.95 E-value=8.9e-10 Score=111.44 Aligned_cols=56 Identities=36% Similarity=0.587 Sum_probs=54.3
Q ss_pred EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360 (371)
Q Consensus 305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~ 360 (371)
.++|+|+|.++...||.|.+||+|.|+.++|.+|++|+.+|+.|+||++||+.+.+
T Consensus 232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred hhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCc
Confidence 48999999999999999999999999999999999999999999999999999877
No 37
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=98.93 E-value=1.6e-07 Score=88.58 Aligned_cols=189 Identities=16% Similarity=0.211 Sum_probs=128.4
Q ss_pred HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
+++++.+++.+|.-.++.-..+++...+.|.... ..++...|.++..|+.+.+.|++.++.|-.++...++.||.++..
T Consensus 21 l~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~-~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k 99 (215)
T cd07604 21 LKKAVKAIHNSGLAHVENELQFAEALEKLGSKAL-SREEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLK 99 (215)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888999999998764 223335899999999999999999999999999999999999999
Q ss_pred cChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHh-hccC--CCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 017467 167 GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR-VREA--PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEA 243 (371)
Q Consensus 167 ~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K-~re~--~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~ 243 (371)
+|+...-+-+...|||-+..+|....-+++.+.+ .++. .++| .-...|.+-++..+..+-..--+-...++.++.
T Consensus 100 ~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~e--~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~ 177 (215)
T cd07604 100 GDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRTE--ITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKT 177 (215)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcchh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9886542366667778777766554433332221 1110 0122 011223444444444432222223444555555
Q ss_pred HhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467 244 QQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 278 (371)
Q Consensus 244 qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l 278 (371)
.+..=-++.|+.+++|+..|+++..++++++..-+
T Consensus 178 kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~ 212 (215)
T cd07604 178 KKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33332368899999999999999999999987654
No 38
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=98.88 E-value=3.9e-09 Score=109.91 Aligned_cols=60 Identities=40% Similarity=0.600 Sum_probs=51.7
Q ss_pred cccceEEEEecCCCCCCCCCccCCCCCEEEEEEeC--CCCeeEEEeCCeeeEecCCceeecc
Q 017467 300 KAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVS--PSGWSEGECKGKAGWFPSANVEKRQ 359 (371)
Q Consensus 300 ~~~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~--d~GWweGe~~Gk~G~FPsnYVE~i~ 359 (371)
+.....+.+-|||.+.+-.||||++||+|.+.... +.|||.|+.+|+.||||++||++-.
T Consensus 802 ~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~~ 863 (865)
T KOG2996|consen 802 PKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEEDD 863 (865)
T ss_pred cceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccccC
Confidence 33455678889999999999999999999998654 5699999999999999999998754
No 39
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.77 E-value=1.2e-06 Score=81.90 Aligned_cols=178 Identities=12% Similarity=0.180 Sum_probs=127.2
Q ss_pred HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
+|+.+.+++.+|.-..-.-..++..+..+|.+.. ++...|.++..|+.+++.|++.+..|..++..-+++||..++.
T Consensus 21 l~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~---~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k 97 (200)
T cd07639 21 LVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGP---KDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVK 97 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566655555555566777788887543 6667999999999999999999999999999999999999999
Q ss_pred cChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 017467 167 GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQH 246 (371)
Q Consensus 167 ~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqq 246 (371)
.|+.. .+-....|||....++.-..-..+ ..|. .| .+++.|++-|.-.++.+...-=+....++.++..-.
T Consensus 98 ~dl~~-vKe~kK~FdK~s~~~d~al~K~~~-~~k~----k~---~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKk 168 (200)
T cd07639 98 EDLRG-FRDARKEFERGAESLEAALQHNAE-TPRR----KA---QEVEEAAAALLGARATFRDRALDYALQINVIEDKKK 168 (200)
T ss_pred hhhHH-HHHHhhhHhhcchhHHHHHHHHhh-cccc----ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88864 456666788877777554222111 0111 12 377888888888888765444445555555544111
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467 247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEA 276 (371)
Q Consensus 247 rlt~~~L~~~veae~~yhq~~~~IL~~L~~ 276 (371)
---+..|.++++|+.+|+.+-.+++++|..
T Consensus 169 fefle~ll~~m~a~~tfF~qG~ell~~l~~ 198 (200)
T cd07639 169 FDILEFMLQLMEAQASFFQQGHEALSALHQ 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 111578999999999999999999998764
No 40
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.76 E-value=1.1e-06 Score=82.32 Aligned_cols=183 Identities=15% Similarity=0.200 Sum_probs=133.5
Q ss_pred HHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCch----hHHHHHHHHHHHHH
Q 017467 67 HQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENIL----PKAAAIYGDARKHV 142 (371)
Q Consensus 67 ~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l----~~A~~~~g~a~~~~ 142 (371)
...|+|||.+.+..-.-++++..+... ++..+..||.. + +|... |.++..|+.+++.|
T Consensus 14 ~~~~~Kl~K~~~~~~~a~~~~~~a~~~--------------Fa~~L~~f~~~-~---dD~~~~a~gg~~l~kF~~~l~ei 75 (202)
T cd07606 14 RDRSLKLYKGCRKYRDALGEAYDGDSA--------------FAESLEEFGGG-H---DDPISVAVGGPVMTKFTSALREI 75 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhcCC-C---CChHHHhccchHHHHHHHHHHHH
Confidence 457888887777665555655555444 45555666632 2 44333 24799999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHH
Q 017467 143 EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQE 222 (371)
Q Consensus 143 ~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~e 222 (371)
...++.|...+..-+++||+.++..|+.+. +-+...|||-+.++++-..-...-..+.| + .+++.|++.+.-
T Consensus 76 ~~~~~~L~~q~~~~l~~pL~~F~k~Dl~~v-Ke~kK~FdK~s~~yd~al~K~~~l~k~~k----~---~~~~ea~~~l~~ 147 (202)
T cd07606 76 GSYKEVLRSQVEHMLNDRLAQFADTDLQEV-KDARRRFDKASLDYEQARSKFLSLTKDAK----P---EILAAAEEDLGT 147 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccCc----h---HHHHHHHHHHHH
Confidence 999999999999999999999999998864 56777888877777665444332221221 2 377889999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467 223 LKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 275 (371)
Q Consensus 223 lk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~ 275 (371)
.+..+-...-+...+++.++..-.---+..|+++++|+.+|+++-.+++.++.
T Consensus 148 ~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~ 200 (202)
T cd07606 148 TRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLE 200 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99987777777777777666522212267899999999999999999998864
No 41
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=98.75 E-value=4.2e-09 Score=106.61 Aligned_cols=56 Identities=32% Similarity=0.523 Sum_probs=51.0
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEe--CCCCeeEEEeCCeeeEecCCceeecc
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKV--SPSGWSEGECKGKAGWFPSANVEKRQ 359 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~--~d~GWweGe~~Gk~G~FPsnYVE~i~ 359 (371)
.+|+++|.|++++++||+|++||+|.++.+ ++.|||+|+.+|+.|.||-|||+.+.
T Consensus 262 eycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 262 EYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred hheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 479999999999999999999999987754 36799999999999999999998765
No 42
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=98.75 E-value=1.9e-09 Score=109.00 Aligned_cols=59 Identities=27% Similarity=0.482 Sum_probs=55.1
Q ss_pred cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467 302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360 (371)
Q Consensus 302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~ 360 (371)
....|.++|.|.+++++||.|+.||+|.|+....+|||.|..+|+.|+||+|||.++..
T Consensus 99 ~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~ 157 (627)
T KOG4348|consen 99 QARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPT 157 (627)
T ss_pred cceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCC
Confidence 34579999999999999999999999999999999999999999999999999998754
No 43
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.73 E-value=1.4e-06 Score=81.30 Aligned_cols=180 Identities=9% Similarity=0.153 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 017467 85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM 164 (371)
Q Consensus 85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~ 164 (371)
+.+|+++.+++.+|.-....-..++.....+|.+. .++...+.++..||.+++.|...+..|...+...+++||+++
T Consensus 19 ~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~---~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F 95 (200)
T cd07603 19 EKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYF---RDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNF 95 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888887777777778888888888864 367788999999999999999999999999999999999999
Q ss_pred hhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 017467 165 ITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQ 244 (371)
Q Consensus 165 ~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~q 244 (371)
+.+|+... +-+...|++-...+++-..-. -.+.|. +| ..++.|+.-|...+..+-..--+....++.++..
T Consensus 96 ~k~dL~~v-KE~kk~Fdk~s~~yd~al~k~-~~~~K~----K~---~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~k 166 (200)
T cd07603 96 VKEDIKKV-KESKKHFEKISDDLDNALVKN-AQAPRS----KP---QEAEEATNILTATRSCFRHTALDYVLQINVLQAK 166 (200)
T ss_pred HHHhhHHH-HHHHHHHHHHHHHHHHHHHHH-hccCCC----CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888753 444445555544443322211 011122 22 3777788888888888655555555556555542
Q ss_pred hhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467 245 QHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 276 (371)
Q Consensus 245 qqrlt~~~L~~~veae~~yhq~~~~IL~~L~~ 276 (371)
-.---++.|+++++|+.+|+.+-.++++++..
T Consensus 167 Kk~e~le~ll~~~~A~~tff~qG~el~~dl~p 198 (200)
T cd07603 167 KRHEILSTLLSYMHAQFTFFHQGYDLLEDLEP 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 11122678999999999999999999988753
No 44
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.73 E-value=1.1e-06 Score=87.92 Aligned_cols=55 Identities=25% Similarity=0.477 Sum_probs=49.0
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEeC-CeeeEecCCceeec
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECK-GKAGWFPSANVEKR 358 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~~-Gk~G~FPsnYVE~i 358 (371)
..++|||||.+...+||+|+.||.+..+... .-||+.|+.+ |+.|+||+|||+.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 4689999999999999999999999877544 5599999986 99999999999865
No 45
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=98.70 E-value=1.3e-09 Score=113.88 Aligned_cols=87 Identities=34% Similarity=0.505 Sum_probs=71.8
Q ss_pred hHHHHhhhhhcCCCCCCCCCCCC----CcccccceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCee
Q 017467 274 VEAEMVSEKQRKESAPPVIPSEN----SSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKA 347 (371)
Q Consensus 274 L~~~l~ser~r~es~~pp~~~~s----~s~~~~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~ 347 (371)
|....+++++||.++..|.+... .....+++++.++..|.+..++||++..+|++.|+.+.++||++|+. +|..
T Consensus 575 L~a~s~Sd~~RWi~Al~p~~~~~~~~~i~e~~dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~ 654 (695)
T KOG3523|consen 575 LSAESQSDRQRWISALRPPSSTKPPEKIYEEWDCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGER 654 (695)
T ss_pred ecCCchHHHHHHHHhcCCCCCCCChhhhhhccCCChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCcc
Confidence 34445678899999876533222 12456788999999999999999999999999999999999999995 8999
Q ss_pred eEecCCceeeccC
Q 017467 348 GWFPSANVEKRQR 360 (371)
Q Consensus 348 G~FPsnYVE~i~~ 360 (371)
||||..|+++|..
T Consensus 655 GWFP~~~veeI~~ 667 (695)
T KOG3523|consen 655 GWFPSSYVEEITN 667 (695)
T ss_pred CcchHHHHHHhcC
Confidence 9999999998754
No 46
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=98.69 E-value=1e-06 Score=86.48 Aligned_cols=154 Identities=16% Similarity=0.281 Sum_probs=103.5
Q ss_pred HhHHHhhhh---ccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhh
Q 017467 108 LSEDCCRYG---AENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRM 183 (371)
Q Consensus 108 l~e~~~kYg---~e~~~-~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~ 183 (371)
|+..+.... .++.. ..+.++|+.||..|+.++..|++.|-.+|..+.++|..||++....+.... . ++
T Consensus 126 LSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a-~-------k~ 197 (289)
T PF10455_consen 126 LSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNTDFKKA-N-------KA 197 (289)
T ss_pred HHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------HH
Confidence 555555555 44410 224578999999999999999999999999999999999999888666543 2 33
Q ss_pred hhHHHHHHHHHHHHHHhhccCCCccc----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHH
Q 017467 184 RQEAETQAVEVSKRQQRVREAPNPEN----VAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEG 259 (371)
Q Consensus 184 Rq~~e~~~~ev~rRq~K~re~~~~d~----~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~vea 259 (371)
|+.++.-+.+.+-=+.+.+...+|+. -.+|..||..|-...+. |..-|..|-+.-.- +..|..|+.|
T Consensus 198 RkkV~~sRL~~D~~R~~~k~~~~pekee~~r~~lE~aEDeFv~aTee-------Av~~Mk~vl~~~e~--l~~Lk~lv~A 268 (289)
T PF10455_consen 198 RKKVENSRLQFDAARANLKNKAKPEKEEQLRVELEQAEDEFVSATEE-------AVEVMKEVLDNSEP--LRLLKELVKA 268 (289)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCcccCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhcCcch--HHHHHHHHHH
Confidence 44444443333322222211012332 23466677766655554 77788876442222 5778999999
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 017467 260 EKNYHLRIAAILGDVEAEM 278 (371)
Q Consensus 260 e~~yhq~~~~IL~~L~~~l 278 (371)
|+.||+.++++|..+-..+
T Consensus 269 Ql~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 269 QLEYHKKAAEALSELLKSL 287 (289)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999876654
No 47
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=98.69 E-value=3.8e-06 Score=79.58 Aligned_cols=177 Identities=15% Similarity=0.220 Sum_probs=126.5
Q ss_pred hchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 017467 78 RGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVE-KEQEDFNRLL 153 (371)
Q Consensus 78 ~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~-~~~~~l~~~~ 153 (371)
.+++.+||+ +..++.++..+...-.|...-+ |+..++ .+ .-.+.-.|..++..|. +....++..+
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~l------Y~p~~~---~~--~~~~~~~y~~~v~~l~~~~~~el~~~~ 93 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQARIAETISSF------YGDAGD---KD--GAMLSQEYKQAVEELDAETVKELDGPY 93 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCCC---cc--HhHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 467889988 5556666655544444443333 888886 21 1123345666666665 4566677778
Q ss_pred HhhhhhHHHHhhhcCh------hhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 017467 154 SSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM 227 (371)
Q Consensus 154 ~~~~~~PL~~~~~~~~------~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m 227 (371)
.+.|++|+..+..-.+ ++++++|. |||+.|+.++... .|.. .+ ..+|..||++|++.+..+
T Consensus 94 ~~~V~~Pl~~~~~~~~~i~k~IkKR~~Kll-DYD~~~~k~~kl~-------~K~~----kd-~~kL~kae~el~~a~~~Y 160 (224)
T cd07591 94 RQTVLDPIGRFNSYFPEINEAIKKRNHKLL-DYDAARAKVRKLI-------DKPS----ED-PTKLPRAEKELDEAKEVY 160 (224)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHh-hHHHHHHHHHHHH-------hccc----CC-HHHHHHHHHHHHHHHHHH
Confidence 9999999999987664 35688888 9999988876433 2221 13 379999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467 228 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 278 (371)
Q Consensus 228 ~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l 278 (371)
..++..+..-|+.+-+-.-.+-..-+.+++..+..||.+....|..+....
T Consensus 161 e~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~ 211 (224)
T cd07591 161 ETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYL 211 (224)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999876622223234577899999999999999888877654
No 48
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=98.66 E-value=3.7e-06 Score=78.92 Aligned_cols=188 Identities=12% Similarity=0.133 Sum_probs=128.6
Q ss_pred hhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCC--CCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017467 80 TKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQ 156 (371)
Q Consensus 80 ~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~--~~~~~-~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~ 156 (371)
++.|=++||+.+.+++.+|.--.=+...++.+...+|.+... .+++. ..+.++..|+..++.|++.+..|-.++..-
T Consensus 14 t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~ 93 (207)
T cd07634 14 TNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDV 93 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777666555555677777777755320 01221 589999999999999999999999999999
Q ss_pred hhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 017467 157 VLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAA 236 (371)
Q Consensus 157 ~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~ 236 (371)
++.||..++..|+.. .+-....|||-...+++...-- ....+.+ + + ..++.|++-|.-.++.+-..-=+...
T Consensus 94 l~~pL~~f~k~dl~~-vKe~kK~FDK~se~y~~aleK~-l~l~~~k---k-~--~~~~ea~~~l~~~R~~F~~~~ldYv~ 165 (207)
T cd07634 94 LIAPLEKFRKEQIGA-AKDGKKKFDKESEKYYSILEKH-LNLSAKK---K-E--SHLQRADTQIDREHQNFYEASLEYVF 165 (207)
T ss_pred HHHHHHHHHHHHHHH-HHHHccchhHHHhHHHHHHHHH-HhccccC---C-c--cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988864 3556667777666664422111 1111111 1 2 37788888888888875444444444
Q ss_pred HHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467 237 ALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 275 (371)
Q Consensus 237 am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~ 275 (371)
.++.|+....---++.|+++++|+.+|+.+..++++++.
T Consensus 166 ~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~ 204 (207)
T cd07634 166 KIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFA 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 454454421111157899999999999999999998875
No 49
>KOG4225 consensus Sorbin and SH3 domain-containing protein [Signal transduction mechanisms]
Probab=98.65 E-value=1.5e-08 Score=102.62 Aligned_cols=53 Identities=32% Similarity=0.520 Sum_probs=50.5
Q ss_pred EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEE--EeCCeeeEecCCceee
Q 017467 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEG--ECKGKAGWFPSANVEK 357 (371)
Q Consensus 305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweG--e~~Gk~G~FPsnYVE~ 357 (371)
.++|||.|.+++++||.|.+||+|.|++++|+||+.| +++|+.|.||.|||+.
T Consensus 434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred cceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCcccccc
Confidence 4899999999999999999999999999999999999 5899999999999974
No 50
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=98.57 E-value=7.7e-06 Score=76.83 Aligned_cols=182 Identities=12% Similarity=0.174 Sum_probs=122.2
Q ss_pred HHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCC--CCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 017467 86 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINE-NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLR 162 (371)
Q Consensus 86 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~--~~~~-~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~ 162 (371)
.+|+...+++.+|.-..=+-..++++..-|+-+-.. .++| -..+.++-.||.++..|++.++-|...+...++.||.
T Consensus 20 kLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~ 99 (207)
T cd07602 20 ELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLE 99 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444444555556666644210 0122 2478999999999999999999999999999999999
Q ss_pred HhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 017467 163 AMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIE 242 (371)
Q Consensus 163 ~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve 242 (371)
.+...++.+ .+-....|+|-....+....-.. +..|.| .+ .+++.|++-|.-.++..-..--+-..+++.|+
T Consensus 100 ~F~k~dl~~-~ke~kk~FdK~se~~~~al~k~~-~lsk~k----k~--~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq 171 (207)
T cd07602 100 KFRKEQIGG-AKEEKKKFDKETEKFCSSLEKHL-NLSTKK----KE--NQLQEADAQLDMERRNFHQASLEYVFKLQEVQ 171 (207)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh-ccCCCC----Cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999977754 35566677776666544333221 111211 12 37777898888888886665555666666665
Q ss_pred HHhhHhh-HhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467 243 AQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVEA 276 (371)
Q Consensus 243 ~qqqrlt-~~~L~~~veae~~yhq~~~~IL~~L~~ 276 (371)
.. .+.. +..|+++++|+.+|+.+..+++.++..
T Consensus 172 ~r-Kkfefle~ll~~m~a~~tff~qG~el~~d~~p 205 (207)
T cd07602 172 ER-KKFEFVETLLSFMYGWLTFYHQGHEVAKDFKP 205 (207)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 52 1221 567999999999999999999988753
No 51
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=98.53 E-value=1.5e-05 Score=75.15 Aligned_cols=184 Identities=10% Similarity=0.187 Sum_probs=117.5
Q ss_pred HHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh
Q 017467 90 VAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP 169 (371)
Q Consensus 90 ~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~ 169 (371)
.|+++..+|.-+++.-.-+++.+.+.|.--- |.++...|.+++.||.+.+.|.+..+.|..++..-+.-||.+++.+|+
T Consensus 24 ~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l-~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dL 102 (215)
T cd07642 24 SVKAIHTSGLAHVENEEQYTQALEKFGSNCV-CRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDL 102 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445555665555555556666666666311 235678999999999999999999999999999999999999999888
Q ss_pred hhhhh-hhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHH-HHHHHHHHHHHHHHhhHHHHH---HHHHHHHH
Q 017467 170 LEDAR-HLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHA-AEARMQELKANMAILGKEAAA---ALAAIEAQ 244 (371)
Q Consensus 170 ~e~~R-~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~-Ae~Kl~elk~~m~~lgkea~~---am~~ve~q 244 (371)
+.. | -+...|||.|..+|+...-.++-..| ..++......+. .++--+++......+..+|.. -++.+...
T Consensus 103 r~v-K~d~KK~fdK~~~dyE~~~~k~ek~~r~---~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~k 178 (215)
T cd07642 103 KGV-KGDLKKPFDKAWKDYETKVTKIEKEKKE---HAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIK 178 (215)
T ss_pred HHh-HHHHHHHHHHHHHHHHHHHHHHHhhhhc---cCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654 3 45667888888888776532221111 001221110000 011112222223333444444 23344443
Q ss_pred hhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467 245 QHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 278 (371)
Q Consensus 245 qqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l 278 (371)
+..=-+++++.+..|+..|+++..+.+++|..-+
T Consensus 179 k~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~ 212 (215)
T cd07642 179 KGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSI 212 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333368899999999999999999999988755
No 52
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.52 E-value=1.5e-05 Score=74.58 Aligned_cols=183 Identities=9% Similarity=0.202 Sum_probs=126.6
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 017467 68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 147 (371)
Q Consensus 68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~ 147 (371)
.+|+||...-++.-..=|.++.+.++ ++.....++.+. ..|...+.+|-.||++++.|...+.
T Consensus 16 ~~l~kl~K~~~~~~d~g~~~~~a~~~--------------F~~~l~d~~~~~---~gd~~i~~~L~kF~~~l~ei~~~~~ 78 (200)
T cd07637 16 AKLDKLVKLCSGMIEAGKAYATTNKL--------------FVSGIRDLSQQC---KKDEMISECLDKFGDSLQEMVNYHM 78 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHHHHHH
Confidence 67888876665444433444444333 344444444442 3566789999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 017467 148 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM 227 (371)
Q Consensus 148 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m 227 (371)
.|...+..-+++||+.++..|+.+. +-+...|++...+++.-..-.. +.|.+ +| .+++.|...|.+.+..+
T Consensus 79 ~l~~q~e~~l~~pL~~F~k~dL~~~-KE~rK~Fdk~se~yd~al~k~~--~~k~k---k~---~~l~Ea~~~L~~~Rk~f 149 (200)
T cd07637 79 ILFDQAQRSVRQQLHSFVKEDVRKF-KETKKQFDKVREDLEIALVKNA--QAPRH---KP---HEVEEATSTLTITRKCF 149 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHh--hcCCC---Ch---HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 4445566666666543333211 12211 12 47788899999999887
Q ss_pred HHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467 228 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEA 276 (371)
Q Consensus 228 ~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~ 276 (371)
-..--+....++.++..-.=--+..|+++++|+.+|+.+-.++++++..
T Consensus 150 ~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~p 198 (200)
T cd07637 150 RHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDP 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 6666666666666655211111578999999999999999999998753
No 53
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.47 E-value=6.7e-08 Score=103.84 Aligned_cols=60 Identities=27% Similarity=0.479 Sum_probs=54.4
Q ss_pred cceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCe-eeEecCCceeeccCC
Q 017467 302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGK-AGWFPSANVEKRQRI 361 (371)
Q Consensus 302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk-~G~FPsnYVE~i~~l 361 (371)
....|+|||||.+..++||+|.+|-+|+++++.+.|||.|..+|. .+|||+|||+++.+.
T Consensus 773 ~~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~ 833 (1267)
T KOG1264|consen 773 PQVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA 833 (1267)
T ss_pred cchhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence 346799999999999999999999999999999999999999865 699999999998764
No 54
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=1.1e-07 Score=96.16 Aligned_cols=55 Identities=36% Similarity=0.537 Sum_probs=52.1
Q ss_pred EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 359 (371)
Q Consensus 305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~ 359 (371)
.++++|||.+..++||+|.+|-+|.|+++.++|||+|.++|..|+||.|||+.+.
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence 4789999999999999999999999999999999999999999999999998764
No 55
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=98.38 E-value=5.3e-05 Score=71.25 Aligned_cols=187 Identities=12% Similarity=0.178 Sum_probs=131.5
Q ss_pred hhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCC--CCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017467 81 KDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQV 157 (371)
Q Consensus 81 ~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~--~~~~~-~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~ 157 (371)
+++=+.+|+...+++.+|.-..=.-..++.+..-|+-+-.. .++|. ..+.++-.|+.+++.|++.+.-|......-+
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l 94 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVL 94 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667888888888888776666666788888888854210 11222 2678999999999999999999999999999
Q ss_pred hhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017467 158 LDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAA 237 (371)
Q Consensus 158 ~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~a 237 (371)
+.||..+...++.. .+--...|||-...+++-..-...=..|.| + .+++.|++-|...++.+-...-+-...
T Consensus 95 ~~~L~~F~kedi~~-~Ke~kK~FdK~se~~~~al~k~~~ls~k~K-----~--~~~eEA~~~L~~~r~~F~~~sLdYV~q 166 (207)
T cd07636 95 ITPLEKFRKEQIGA-AKEAKKKYDKETEKYCAVLEKHLNLSSKKK-----E--SQLHEADSQVDLVRQHFYEVSLEYVFK 166 (207)
T ss_pred HHHHHHHHHHHHHH-HHHHhhhHhhhhhHHHHHHHHHhcCcccCC-----c--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999877653 344555677766666443322211001111 2 388899999999998865554455555
Q ss_pred HHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467 238 LAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 275 (371)
Q Consensus 238 m~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~ 275 (371)
++.|++.-.---+..|+++++|..+|+.+..+++.++.
T Consensus 167 i~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~ 204 (207)
T cd07636 167 VQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFS 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 55554421111156799999999999999999998864
No 56
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.37 E-value=9.7e-05 Score=69.87 Aligned_cols=188 Identities=11% Similarity=0.188 Sum_probs=123.8
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhcc-CCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 017467 68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAE-NNQNINENILPKAAAIYGDARKHVEKEQ 146 (371)
Q Consensus 68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e-~~~~~~~~~l~~A~~~~g~a~~~~~~~~ 146 (371)
..++||+.--++.-+-+|++..+...| +....-|+.. .++|++|...+.++..|+.+++.|+..+
T Consensus 16 ~~~~kL~K~c~~~~~a~~~~~~A~~~F--------------~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~ 81 (215)
T cd07601 16 SYMNQLLQACKRVYDAQNELKSATQAL--------------SKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMH 81 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555445555555554444 4444445432 1113467777889999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHH-HHHHHHHHHHHH
Q 017467 147 EDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKL-HAAEARMQELKA 225 (371)
Q Consensus 147 ~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl-~~Ae~Kl~elk~ 225 (371)
..|...+..-++.||..++.+|+.+. +-+...|||-...+++-..-..+ ..|.| +. +++ +.|++-+...+.
T Consensus 82 ~~L~~q~~~~l~~pL~~F~k~Dl~~v-Ke~kK~FdK~s~~~d~al~K~~~-l~k~k----~~--~~~~~Ea~~~l~~~R~ 153 (215)
T cd07601 82 STLSSQLADTVLHPISQFMESDLAEI-MTLKELFKAASNDHDGVLSKYSR-LSKKR----EN--TKVKIEVNDEVYACRK 153 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHhHHHHHHHHHHhh-CCcCC----Cc--hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999764 56666778876666653333321 11111 11 122 357777777777
Q ss_pred HHHHhhHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHHHHHHHHHHH-HhHHHH
Q 017467 226 NMAILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAAILG-DVEAEM 278 (371)
Q Consensus 226 ~m~~lgkea~~am~~ve~qqqrlt-~~~L~~~veae~~yhq~~~~IL~-~L~~~l 278 (371)
..-..--+-..+++.++.. .+.. +..|+++++|+.+|+.+-.+++. ++..-+
T Consensus 154 ~F~~~~ldYv~~ln~iq~k-Kk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~ 207 (215)
T cd07601 154 KQHQTAMNYYCALNLLQYK-KTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFL 207 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7555544555556655541 1111 57899999999999999999997 766544
No 57
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.36 E-value=0.00012 Score=68.47 Aligned_cols=182 Identities=9% Similarity=0.215 Sum_probs=131.1
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 017467 68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 147 (371)
Q Consensus 68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~ 147 (371)
.+|+||+..-+..-+.+++++.+.+.|+. +.+-+ .+||+ ++...|.++-.|+.++..|++.+.
T Consensus 16 ~~l~Kl~K~~~~~~dag~~~~~a~~~F~~-------~l~d~----~~~~~------~De~i~~~l~kF~~~l~ei~~~~~ 78 (200)
T cd07638 16 LKLDKLVKLCIGMIDAGKAFCQANKQFMN-------GIRDL----AQYSS------KDAVIETSLTKFSDTLQEMINYHT 78 (200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHH----HHhCC------cchhhHHHHHHHHHHHHHHHHHHH
Confidence 67899999998888888888887777753 21112 23443 355788999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 017467 148 DFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM 227 (371)
Q Consensus 148 ~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m 227 (371)
-|...+..-+++||..++..|+.+ .+-....|+|...+.+.-..-. -|..|.| + .+++.|.+-+...++..
T Consensus 79 ~L~~q~~~~l~~~L~~F~k~dl~~-vke~kk~FdK~s~~~~~aL~K~-~~~~k~k-----~--~e~eEa~~~l~~~r~~F 149 (200)
T cd07638 79 ILFDQAQRSIKAQLQTFVKEDLRK-FKDAKKQFDKVSEEKENALVKN-AQVQRNK-----Q--HEVEEATNILTATRKCF 149 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhHHHHHHHHHh-ccCCcCc-----h--HHHHHHHHHHHHHHHHH
Confidence 999999999999999999988865 3666667777655442222111 0111211 2 36777888888888886
Q ss_pred HHhhHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 017467 228 AILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAAILGDVEA 276 (371)
Q Consensus 228 ~~lgkea~~am~~ve~qqqrlt-~~~L~~~veae~~yhq~~~~IL~~L~~ 276 (371)
-..--+...+++.++.. .+.. +..|.++++|+.+|+.+-.+++.++..
T Consensus 150 ~~~~ldYv~~ln~vq~k-Kkfe~le~ll~~m~a~~tff~qG~el~~d~~p 198 (200)
T cd07638 150 RHIALDYVLQINVLQSK-RRSEILKSMLSFMYAHLTFFHQGYDLFSELGP 198 (200)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 66666666666666552 1221 567999999999999999999998753
No 58
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=98.35 E-value=8.2e-05 Score=69.97 Aligned_cols=183 Identities=11% Similarity=0.163 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCC--CCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 017467 85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQ--NINE-NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPL 161 (371)
Q Consensus 85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~--~~~~-~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL 161 (371)
+.+|+...+++.+|.--.=+...++.+..-++-+-.. .+++ ...|..+..|+.++..+++.++-|..++...++.||
T Consensus 19 ~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL 98 (207)
T cd07635 19 KELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLIKPL 98 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444443333444444444422110 1122 234799999999999999999999999999999999
Q ss_pred HHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017467 162 RAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI 241 (371)
Q Consensus 162 ~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v 241 (371)
..+...|+.+ .+-....|+|-..+.++-..-..+=..|.| + .+++.|++-|.-.+...-...-+-...++.+
T Consensus 99 ~~F~kedl~~-~Ke~KK~FdK~se~~~~Al~K~~~ls~kkk-----~--~e~~EA~~~l~~~r~~F~~~sLdYv~qin~l 170 (207)
T cd07635 99 ERFRKEQLGA-VKEEKKKFDKETEKNYSLLEKHLNLSAKKK-----E--PQLQEADVQVEQNRQHFYELSLEYVCKLQEI 170 (207)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHhccCCCC-----c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988864 466667888877776554443322222322 2 2666788888888887544444455555555
Q ss_pred HHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467 242 EAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 275 (371)
Q Consensus 242 e~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~ 275 (371)
+..-.=--+..|+++++|+.+|+.+..+++.++.
T Consensus 171 Q~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~ 204 (207)
T cd07635 171 QERKKFECVEPMLSFFQGVFTFYHQGYELAKDFN 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 4411111156799999999999999999998864
No 59
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=98.34 E-value=4.3e-07 Score=87.82 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=55.3
Q ss_pred cceEEEEecCCCCCCCCCccCCCCCEEEEEE--eCCCCeeEEEe-CCeeeEecCCceeeccCCCCC
Q 017467 302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRK--VSPSGWSEGEC-KGKAGWFPSANVEKRQRIPVS 364 (371)
Q Consensus 302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~--~~d~GWweGe~-~Gk~G~FPsnYVE~i~~lP~s 364 (371)
....+.|||+|.+.++.||+|.+||.+.|+. ..|++||.++. .|..|++|.|||.++..-|.+
T Consensus 190 vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~~t 255 (379)
T KOG4226|consen 190 VLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGPST 255 (379)
T ss_pred EEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCccc
Confidence 4556899999999999999999999999975 45889999994 899999999999999876644
No 60
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=7.5e-07 Score=92.48 Aligned_cols=58 Identities=26% Similarity=0.379 Sum_probs=50.8
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEeC---CCCeeEEEeCCeeeEecCCceeeccCC
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS---PSGWSEGECKGKAGWFPSANVEKRQRI 361 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~---d~GWweGe~~Gk~G~FPsnYVE~i~~l 361 (371)
..+-|+|||++++++||+|.+||.++|++.. +.+||.++.+|+.||||.||+-....+
T Consensus 684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPri 744 (752)
T KOG0515|consen 684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRI 744 (752)
T ss_pred ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccc
Confidence 4578999999999999999999999999764 447999999999999999998765443
No 61
>KOG1702 consensus Nebulin repeat protein [Cytoskeleton]
Probab=98.24 E-value=8.7e-07 Score=82.59 Aligned_cols=56 Identities=29% Similarity=0.417 Sum_probs=51.4
Q ss_pred ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeec
Q 017467 303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR 358 (371)
Q Consensus 303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i 358 (371)
...++|+|||.++.++|.+|.-||.|.-+..+++||..|.+ +|..|..|+||+|.+
T Consensus 207 gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 207 GKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred CccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 35689999999999999999999999999999999999985 899999999999853
No 62
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=98.24 E-value=0.00026 Score=66.22 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcCh------hhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccC
Q 017467 131 AAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA 204 (371)
Q Consensus 131 A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~------~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~ 204 (371)
....|..+++.|...-......+...|++|+..+..-.+ ++++++|. |||++|+.++.. .+.|. +-
T Consensus 72 ~~~~y~~~~~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~l-Dyd~~~~k~~k~------~~~k~-~~ 143 (216)
T cd07599 72 RLSRYVKALEELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKL-DYDKLQNKLNKL------LQKKK-EL 143 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH------HhcCC-CC
Confidence 344677777777654444455888999999999987543 35688888 999998887661 22221 11
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHH
Q 017467 205 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG 272 (371)
Q Consensus 205 ~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~ 272 (371)
+..| ..+|..|+++|++.+..+..++..+..-|+.+-+-...+--.-+.+++--++.|+......+.
T Consensus 144 ~~kd-~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~ 210 (216)
T cd07599 144 SLKD-EKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEYLQ 210 (216)
T ss_pred ChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1113 479999999999999999999999999988765522221112244466667777766655443
No 63
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.22 E-value=0.00037 Score=65.71 Aligned_cols=179 Identities=13% Similarity=0.175 Sum_probs=121.0
Q ss_pred HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
+.+.+.+++.-....-..+..||..+.-||.. ++..|++||..++++...|.+.++.-...+-..|++||..+..
T Consensus 23 l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~-----E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~ 97 (211)
T cd07598 23 LCQDFAAYTRKTARLRDKGDELAKSINAYADT-----ENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGT 97 (211)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555544444445556788889999985 3457999999999999999999999999999999999998876
Q ss_pred cChh-hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017467 167 GAPL-EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ 245 (371)
Q Consensus 167 ~~~~-e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qq 245 (371)
--+- .+.++..++ -|... .--..+..|.|....++ -.+|.+||.+++..+.-.....+....-|...|.
T Consensus 98 l~k~~k~~~K~~~~---ar~~~----~~~~~~leklk~~~~~d-~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~-- 167 (211)
T cd07598 98 ICKHARDDLKNTFT---ARNKE----LKQLKQLEKLRQKNPSD-RQIISQAESELQKASVDANRSTKELEEQMDNFEK-- 167 (211)
T ss_pred HHHHHHHHHHHHHH---HHHHH----HHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3311 122221110 11111 11112233444322233 3567679999999988888888878777877766
Q ss_pred hHhh-H-hhHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q 017467 246 HRLT-F-QRLVAMVEGEKNYHLRIAAILGDVEAEMVS 280 (371)
Q Consensus 246 qrlt-~-~~L~~~veae~~yhq~~~~IL~~L~~~l~s 280 (371)
+++. + .-|..|+.++..||.++.++...+...+.+
T Consensus 168 ~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~ 204 (211)
T cd07598 168 QKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQN 204 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3322 3 347789999999999999998887766543
No 64
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=98.22 E-value=3.8e-07 Score=93.48 Aligned_cols=55 Identities=29% Similarity=0.478 Sum_probs=51.3
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeec
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR 358 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i 358 (371)
.+++|+|||++-++.|++|..+|.|.++...+.|||.|.. .|..|+||+|||+.+
T Consensus 428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 4689999999999999999999999999999999999995 799999999999865
No 65
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=98.18 E-value=0.00039 Score=65.42 Aligned_cols=194 Identities=16% Similarity=0.231 Sum_probs=128.2
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 017467 68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 147 (371)
Q Consensus 68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~ 147 (371)
--||+|.. +|+. |.+++.+++.++.--.+++.++|+.+..= . ..-.+|.+|+.+.+.++.|+..+.
T Consensus 10 P~~e~lv~---~~~k----Y~~al~~~~~a~~~f~dal~ki~~~A~~s--~-----~s~~lG~~L~~~s~~~r~i~~~~~ 75 (219)
T PF08397_consen 10 PAWENLVS---LGKK----YQKALRAMSQAAAAFFDALQKIGDMASNS--R-----GSKELGDALMQISEVHRRIENELE 75 (219)
T ss_dssp HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTS--S-----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCC--C-----ccccHHHHHHHHHHHHHHHHHHHH
Confidence 34555543 3444 45677888888777777877777765531 1 123699999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhhcChhhh---hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHH
Q 017467 148 DFNRLLSSQVLDPLRAMITGAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELK 224 (371)
Q Consensus 148 ~l~~~~~~~~~~PL~~~~~~~~~e~---~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk 224 (371)
.+...+-..||-||..-+..+.+.. =++....|++.|.+++....++.|=+.|.+. ..++.-..++.+ ++.+.
T Consensus 76 ~~~~~~~~~li~pLe~~~e~d~k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~k-gk~~~~~~~~~~---~~~v~ 151 (219)
T PF08397_consen 76 EVFKAFHSELIQPLEKKLEEDKKYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRK-GKDDQKYELKEA---LQDVT 151 (219)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CTSCHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCccccHHHHHH---HHHHH
Confidence 9999999999999999999888754 2444456666666666666665332222221 122322334444 44444
Q ss_pred HHHHHhhHHHHHHHHH-HHHHhhHhh--HhhHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 017467 225 ANMAILGKEAAAALAA-IEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGDVEAEMV 279 (371)
Q Consensus 225 ~~m~~lgkea~~am~~-ve~qqqrlt--~~~L~~~veae~~yhq~~~~IL~~L~~~l~ 279 (371)
.....+..-...++-. +.+...|.+ +..++.+++.+..||..+..+|...-....
T Consensus 152 ~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~ 209 (219)
T PF08397_consen 152 ERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQ 209 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444455545555554 333445666 578999999999999998777766544443
No 66
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=98.13 E-value=0.0002 Score=66.45 Aligned_cols=158 Identities=13% Similarity=0.146 Sum_probs=102.2
Q ss_pred hchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 017467 78 RGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHV-EKEQEDFNRLL 153 (371)
Q Consensus 78 ~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~-~~~~~~l~~~~ 153 (371)
.+.+.++|| |.++|.+.. .-+.+. ....|-=|+..++ .+ . .+...|..++..+ +..+.++...+
T Consensus 19 ~~~~~l~kd~k~Y~~~~~~~~---~~~~~~---~~~~~d~y~~~~~---~~--~-~~~~~~~~~~~~~~~~~~~e~~~~i 86 (195)
T cd07589 19 KQVQLVVRNVELYLQHVQESV---LVKVLA---LEVVLDLYPSNHP---RL--E-SKWERFRRVVRGISSKALPEFKSRV 86 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHH---HHHHHHhccCCCh---hh--H-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789998 777887776 333333 2222333776665 21 2 2344555555554 44889999999
Q ss_pred HhhhhhHHHHhhhcCh------hhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHH
Q 017467 154 SSQVLDPLRAMITGAP------LEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANM 227 (371)
Q Consensus 154 ~~~~~~PL~~~~~~~~------~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m 227 (371)
...|++|+..+..-.+ +++.++|- ||+|.|+..+ ++..|+.++++.+..+
T Consensus 87 ~~~V~~Pl~~~~~~~~~~~k~I~KR~~Kll-DYdr~~~~~~-----------------------k~~k~e~~l~~a~~~y 142 (195)
T cd07589 87 RKLVIEPLSSLLKLFSGPQKLIQKRYDKLL-DYERYKEKKE-----------------------RGGKVDEELEEAANQY 142 (195)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhc-cHHHHHHHHH-----------------------hhcchHHHHHHHHHHH
Confidence 9999999999976442 34567777 7887555432 2334566666666666
Q ss_pred HHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHH
Q 017467 228 AILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAIL 271 (371)
Q Consensus 228 ~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL 271 (371)
..++..+..-|+.+-+--..+.-.-+.+|+..|..||....+-+
T Consensus 143 ~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 143 EALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666688888876552333333568889999999998886653
No 67
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]
Probab=98.07 E-value=1.2e-06 Score=82.94 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=54.0
Q ss_pred ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE-eCCeeeEecCCceeeccCCC
Q 017467 303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE-CKGKAGWFPSANVEKRQRIP 362 (371)
Q Consensus 303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe-~~Gk~G~FPsnYVE~i~~lP 362 (371)
...++++|||.++...+|.|++|+++.|+.+.+..||..+ ..|+.|++|.+||+...+..
T Consensus 124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~ 184 (293)
T KOG4792|consen 124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPAS 184 (293)
T ss_pred hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhh
Confidence 3467889999999999999999999999999999999999 48999999999999876544
No 68
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=98.06 E-value=2e-06 Score=80.42 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=51.3
Q ss_pred ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceee
Q 017467 303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEK 357 (371)
Q Consensus 303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~ 357 (371)
.....++|||.+..+++|.|.+||.+.|+...++.||.|.+.|+.|+||++||..
T Consensus 163 ~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p 217 (222)
T KOG3601|consen 163 NYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAP 217 (222)
T ss_pred chhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccccc
Confidence 3457899999999999999999999999999999999999999999999999864
No 69
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=98.04 E-value=0.0011 Score=62.56 Aligned_cols=201 Identities=14% Similarity=0.186 Sum_probs=125.8
Q ss_pred ceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHH
Q 017467 57 MVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYG 136 (371)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g 136 (371)
..++|+==.-+..|+|| ++-+.|++.+|.-+++.-.-+.+...+.|.-.- +.++...|.|++.|+
T Consensus 5 ~~~ee~l~~~e~~L~Kl--------------~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~-~~dd~~i~~a~~kfs 69 (215)
T cd07641 5 NVLEEALDQDRTALQKV--------------KKSVKAIYNSGQDHVQNEENYAQALDKFGSNFL-SRDNPDLGTAFVKFS 69 (215)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCchhHHHHHHHHH
Confidence 34555544456667765 566677777777777777777777777787752 236778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhh-hhhhhHHhhhhHHHHHHHHHHHHH---HhhccCCCcccHHH
Q 017467 137 DARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDAR-HLAQRYSRMRQEAETQAVEVSKRQ---QRVREAPNPENVAK 212 (371)
Q Consensus 137 ~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R-~L~~dy~r~Rq~~e~~~~ev~rRq---~K~re~~~~d~~~k 212 (371)
..++.|...--.|-.++..-|.-||.+++-+|++.. | -+...++|....+|+...-.++.. .|--+-..+| +.-
T Consensus 70 ~~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dlr~~-K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e-~~~ 147 (215)
T cd07641 70 TLTKELSTLLKNLLQGLSHNVIFTLDSLLKGDLKGV-KGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTE-ITG 147 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhcc-ccc
Confidence 999999999999999999999999999999887654 3 444456666666655554332211 1210000111 000
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467 213 LHAAEARMQELKANMAILGKEAAAALA---AIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 278 (371)
Q Consensus 213 l~~Ae~Kl~elk~~m~~lgkea~~am~---~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l 278 (371)
.. |.+-|.-.+.. +...+..=+. .++....---++.|+++..|+.+|+++..+.+++|..-+
T Consensus 148 ~E-aa~~l~~~Rr~---Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~ 212 (215)
T cd07641 148 AE-IAEEMEKERRL---FQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYI 212 (215)
T ss_pred hh-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 22333333332 1111111111 122211111167899999999999999999999987654
No 70
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=3.3e-06 Score=82.93 Aligned_cols=60 Identities=27% Similarity=0.239 Sum_probs=49.3
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEeC-----CCCeeEEE-e-CCeeeEecCCceeeccCCCC
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVS-----PSGWSEGE-C-KGKAGWFPSANVEKRQRIPV 363 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~-----d~GWweGe-~-~Gk~G~FPsnYVE~i~~lP~ 363 (371)
..|+|+|||.+.++.||+|++||.+.|..+. +..||... + +|..||||.|||+.+..-|.
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq~q 335 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQPQ 335 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcCCC
Confidence 4689999999999999999999999987543 33477776 4 56789999999999876443
No 71
>KOG1843 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=7.2e-06 Score=83.02 Aligned_cols=54 Identities=30% Similarity=0.497 Sum_probs=49.2
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEeCC--CCeeEEEeCCeeeEecCCceee
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSP--SGWSEGECKGKAGWFPSANVEK 357 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d--~GWweGe~~Gk~G~FPsnYVE~ 357 (371)
..+.++|+|..+.+++|+|++||+|+++++.+ ..||.|..+|..|+||+|||+.
T Consensus 417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 37899999999999999999999999987664 4799999999999999999963
No 72
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=97.85 E-value=0.0041 Score=58.29 Aligned_cols=180 Identities=13% Similarity=0.167 Sum_probs=116.9
Q ss_pred HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
+-+.|+++.++|-.++|.-..++|.+.+.|+.-- +.++..+|-|.+.|+--.+.++-.--+|-.++..-+.=||.+++-
T Consensus 21 ~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l-~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK 99 (213)
T cd07640 21 IKKIVKAIHNSGLNHVENEEQYTEALENLGNSHL-SQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLK 99 (213)
T ss_pred HHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhh-cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHH
Confidence 3456778899999999999999999999999766 556788999999999999999988888888888889999999988
Q ss_pred cChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC--CcccHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 017467 167 GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP--NPENVA-----KLHAAEARMQELKANMAILGKEAAAALA 239 (371)
Q Consensus 167 ~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~--~~d~~~-----kl~~Ae~Kl~elk~~m~~lgkea~~am~ 239 (371)
+|++.. | -||+| .+|...-|++-...|....+ .|- .. +...|.+-|+-.+.. +...+..=+.
T Consensus 100 ~dlr~~-K---~D~KK---~FeK~skDyE~kl~K~ak~~r~k~~-~~g~~~~e~eEaae~l~~eRr~---Fql~acdYll 168 (213)
T cd07640 100 GQLRDG-R---LESKK---QMEKAWKDYEAKIGKLEKERREKQK-QHGLIRLDMTDTAEDMQRERRN---FQLHMCEYLL 168 (213)
T ss_pred HHhhhh-h---HHHHh---HHHHHHHHHHHHHHHHhccccccch-hcccccccHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 776543 2 23333 23444444444434332111 110 00 112233333333333 1111211111
Q ss_pred HHHH-HhhH--hhHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017467 240 AIEA-QQHR--LTFQRLVAMVEGEKNYHLRIAAILGDVEAEM 278 (371)
Q Consensus 240 ~ve~-qqqr--lt~~~L~~~veae~~yhq~~~~IL~~L~~~l 278 (371)
.+.. |-.+ --++.|+++.+|+.+|+++-.+.+++|..-+
T Consensus 169 kin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyi 210 (213)
T cd07640 169 KAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFI 210 (213)
T ss_pred HHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 2111 1111 1168899999999999999999999987644
No 73
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.80 E-value=0.0035 Score=58.94 Aligned_cols=179 Identities=11% Similarity=0.128 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCc------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017467 85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENI------LPKAAAIYGDARKHVEKEQEDFNRLLSSQVL 158 (371)
Q Consensus 85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~------l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~ 158 (371)
++||+-..++|.+|....=....++.++.-++-+- ..+.. .+.+|-.||..+..|++.+.-|..+....++
T Consensus 19 kkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~---igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~ 95 (207)
T cd07633 19 KDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDF---IGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNASDLLI 95 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665555555555555555555542 23333 7899999999999999999999999999999
Q ss_pred hHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 017467 159 DPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAA 237 (371)
Q Consensus 159 ~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~a 237 (371)
.||+.++--++.. .+--...|+|-+..+++...- -... |+ +.+ .+++.|.+.|.-.+..+-..--+=.--
T Consensus 96 ~~L~~F~Kedi~~-~Ke~KK~FdK~se~~~~aL~k----~a~~--s~k~K~--~e~eEA~~~L~~~r~~F~~~aLdYV~q 166 (207)
T cd07633 96 KPLENFRKEQIGF-TKERKKKFEKDSEKFYSLLDR----HVNL--SSKKKE--SQLQEADLQVDKERQNFYESSLEYVYQ 166 (207)
T ss_pred HHHHHHHHHHHHH-HHHHhhhhhhhhhHHHHHHHH----Hhcc--cccCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987644332 222333444544443221111 0101 01 223 478888888888777642221111111
Q ss_pred HHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467 238 LAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 275 (371)
Q Consensus 238 m~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~ 275 (371)
++.|+....-=-|.-|++|+.+..+|+.+-.+++.++.
T Consensus 167 I~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~ 204 (207)
T cd07633 167 IQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFL 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 11222210001146689999999999999999988764
No 74
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=97.78 E-value=4.2e-06 Score=83.21 Aligned_cols=68 Identities=26% Similarity=0.367 Sum_probs=59.8
Q ss_pred CCcccccceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCCCC
Q 017467 296 NSSQKAVYFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRIPV 363 (371)
Q Consensus 296 s~s~~~~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~lP~ 363 (371)
+.+.++....+.+++||..+...||.|..||++.+...++.+||.|...|.+||||..|++.+...|.
T Consensus 168 ni~~~~~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~fpe 235 (386)
T KOG4773|consen 168 NIVLGMAAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDDFPE 235 (386)
T ss_pred cccchhhhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhccCcc
Confidence 33444455678999999999999999999999999999999999999999999999999998876665
No 75
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=97.70 E-value=6.5e-06 Score=84.88 Aligned_cols=57 Identities=28% Similarity=0.427 Sum_probs=52.7
Q ss_pred ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467 303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 359 (371)
Q Consensus 303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~ 359 (371)
...++|+.||....++||.|+++|+|++++.-++..|.|+.+|-+||||+.||+.+.
T Consensus 548 ~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvelld 604 (848)
T KOG2222|consen 548 AKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLD 604 (848)
T ss_pred hHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHH
Confidence 346889999999999999999999999999999999999999999999999998653
No 76
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=97.62 E-value=0.024 Score=52.86 Aligned_cols=158 Identities=16% Similarity=0.233 Sum_probs=94.9
Q ss_pred hhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--ChhhhhhhhhhhHHhh
Q 017467 106 TKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLEDARHLAQRYSRM 183 (371)
Q Consensus 106 ~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e~~R~L~~dy~r~ 183 (371)
..||.++...|.--. +..++.++..+|++...+.+..+.+...--..|.+||+.+..- +.++. |.+| .+.
T Consensus 62 ~e~~~~~~~la~~E~----~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~---l~~R-~~~ 133 (236)
T PF09325_consen 62 AEFGSSFSQLAKSEE----EKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEA---LNRR-DKK 133 (236)
T ss_pred HHHHHHHHHhhcccC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHH-HHH
Confidence 356666666665433 3469999999999999999999999999999999999987652 22221 1111 122
Q ss_pred hhHHHHHHHHHHHHHHhh---ccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHhhHhhH-h
Q 017467 184 RQEAETQAVEVSKRQQRV---REAP-NPENVAKLHAAEARMQELKANMAILGKE-------AAAALAAIEAQQHRLTF-Q 251 (371)
Q Consensus 184 Rq~~e~~~~ev~rRq~K~---re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgke-------a~~am~~ve~qqqrlt~-~ 251 (371)
..+++....++.+++... +.+. ++ ..|+..|+..+.++...+.....+ +...+...+. .....+ .
T Consensus 134 ~~~~~~a~~~l~kkk~~~~kl~~~~~~~--~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~-~k~~d~k~ 210 (236)
T PF09325_consen 134 LIEYQNAEKELQKKKAQLEKLKASGKNR--QDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEK-EKVKDFKS 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 334444455555444432 2121 12 146666666666655554433333 3333322222 111123 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 017467 252 RLVAMVEGEKNYHLRIAAILGDV 274 (371)
Q Consensus 252 ~L~~~veae~~yhq~~~~IL~~L 274 (371)
-|..+++.+..||+++.++-+.+
T Consensus 211 ~l~~~~~~~i~~~~~~~~~We~~ 233 (236)
T PF09325_consen 211 MLEEYAESQIEYQKKMLEAWETF 233 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 58889999999999998887654
No 77
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.60 E-value=0.015 Score=52.87 Aligned_cols=160 Identities=13% Similarity=0.216 Sum_probs=92.1
Q ss_pred hHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc-----ChhhhhhhhhhhHH
Q 017467 107 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG-----APLEDARHLAQRYS 181 (371)
Q Consensus 107 ~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~-----~~~e~~R~L~~dy~ 181 (371)
.||.++..++..-. . .+..|+.++..+|.++..+....+.+....-..|++||+.+..- +.+..=.++-.+|+
T Consensus 43 elg~~~~~Ls~~e~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~ 120 (218)
T cd07596 43 EFGKALIKLAKCEE-E-VGGELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQ 120 (218)
T ss_pred HHHHHHHHHHhhcc-c-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777776533 0 11259999999999999999999999999999999999998851 11222122233444
Q ss_pred hhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHhhHhhH-hhH
Q 017467 182 RMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELK-------ANMAILGKEAAAALAAIEAQQHRLTF-QRL 253 (371)
Q Consensus 182 r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk-------~~m~~lgkea~~am~~ve~qqqrlt~-~~L 253 (371)
.+.+.+.......+ |.+..+++. ..++..++.++.++. ..+..+...+...|...+. .....+ .-|
T Consensus 121 ~~~~~l~~k~~~~~----kl~~~~~~~-~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~-~~~~dlk~~l 194 (218)
T cd07596 121 SLKKDLASKKAQLE----KLKAAPGIK-PAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHE-ERARDLKAAL 194 (218)
T ss_pred HHHHHHHHHHHHHH----HHhhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 44444433333322 221111111 124444444444444 3333333333333333222 111123 346
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 017467 254 VAMVEGEKNYHLRIAAILGDV 274 (371)
Q Consensus 254 ~~~veae~~yhq~~~~IL~~L 274 (371)
..+++.+..|++.+.++...+
T Consensus 195 ~~~~~~qi~~~~~~~~~W~~~ 215 (218)
T cd07596 195 KEFARLQVQYAEKIAEAWESL 215 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 779999999999998887764
No 78
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=97.58 E-value=0.02 Score=54.59 Aligned_cols=175 Identities=15% Similarity=0.220 Sum_probs=111.1
Q ss_pred HHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC
Q 017467 89 KVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA 168 (371)
Q Consensus 89 r~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~ 168 (371)
+++.+++.++.--.+...++||.-.. +. | --.+|.+|..+.+.++.++...+.+...+-..+|.||..=+..+
T Consensus 34 kal~a~~~a~~~~~dAl~kia~~A~~--s~-~----sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d 106 (223)
T cd07605 34 KALQALSQAAKVFFDALAKIGELASQ--SR-G----SQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELD 106 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--CC-c----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34555555555555555555554332 11 2 12588888888888888988888888888999999999888877
Q ss_pred hhhh---hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHH
Q 017467 169 PLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAI-EAQ 244 (371)
Q Consensus 169 ~~e~---~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v-e~q 244 (371)
.+.+ =.+-..+|++.|.+++.-..++.+=+.|.+.+..+....++.++.+-+..-.. .|..-...++..+ -..
T Consensus 107 ~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~---ele~~~~~~lr~al~EE 183 (223)
T cd07605 107 QKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQK---ELEAFVSQGLRDALLEE 183 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 7754 23344478888888888888876544444421112223466666544433333 3333344455442 223
Q ss_pred hhHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Q 017467 245 QHRLT--FQRLVAMVEGEKNYHLRIAAILGD 273 (371)
Q Consensus 245 qqrlt--~~~L~~~veae~~yhq~~~~IL~~ 273 (371)
..|.+ ++.++.+++.+..||......|..
T Consensus 184 RrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~ 214 (223)
T cd07605 184 RRRYCFLVDKHCSVAKHEIAYHAKAMTLLST 214 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 478888999999999888776654
No 79
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=97.57 E-value=0.024 Score=53.73 Aligned_cols=185 Identities=9% Similarity=0.128 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccC-CCCCCCCchhHHHHHHHHHHHHH
Q 017467 64 MQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN-NQNINENILPKAAAIYGDARKHV 142 (371)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~-~~~~~~~~l~~A~~~~g~a~~~~ 142 (371)
-|-||-+++.|-.|+.---- -.+++.-..-|-..+ .+..+|...+.+|-.|+.++..|
T Consensus 19 ~~~~~~~~~~~~a~~~ls~a---------------------~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El 77 (215)
T cd07631 19 NQLFQAMHRIYDAQNELSAA---------------------THLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDEL 77 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHH
Confidence 46799999999877611111 124666667777322 21246667999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHH-HHHHHHH
Q 017467 143 EKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLH-AAEARMQ 221 (371)
Q Consensus 143 ~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~-~Ae~Kl~ 221 (371)
++.+.-|-..+..-++.||..+...|+.+ ++-+...|+|-..+.+.-..-..+ ..|.| ++ ++++ .|.+-+.
T Consensus 78 ~~~~~~L~~q~~~sl~~pL~~F~kedL~~-~Ke~KK~FdK~Se~~d~Al~K~a~-lsk~K----~~--E~~~eea~~~v~ 149 (215)
T cd07631 78 SSCHAVLSTQLADAMMFPITQFKERDLKE-ILTLKEVFQIASNDHDAAINRYSR-LSKRR----EN--EKVKYEVTEDVY 149 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHhc-CCCCC----Cc--hHHHHHHHHHHH
Confidence 99999999999999999999999988865 477777888877776554433321 11222 12 2232 2333333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHHHHHHHH-HHHHhHHHH
Q 017467 222 ELKANMAILGKEAAAALAAIEAQQHRLT-FQRLVAMVEGEKNYHLRIAA-ILGDVEAEM 278 (371)
Q Consensus 222 elk~~m~~lgkea~~am~~ve~qqqrlt-~~~L~~~veae~~yhq~~~~-IL~~L~~~l 278 (371)
-.+...-..--+-...++.++.. .+.. +..|.++++|+..|+.+..+ +..++..-+
T Consensus 150 ~tR~~F~~~aLdYv~qLn~lQ~r-KKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~ 207 (215)
T cd07631 150 TSRKKQHQTMMHYFCALNTLQYK-KKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFL 207 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34443222222223333333331 1111 56799999999999999999 554655443
No 80
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=97.50 E-value=0.049 Score=52.06 Aligned_cols=215 Identities=18% Similarity=0.215 Sum_probs=136.5
Q ss_pred hHHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccC
Q 017467 40 QAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN 119 (371)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~ 119 (371)
|.+.+.||.+|- .-+|+=-.||. -+||.|=... .+=+.+++-++.++..=+.-.+.-+.||+.+.--|..-
T Consensus 14 q~~~e~~g~~~~---~~~it~D~eL~--~kle~l~~~~----~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e 84 (229)
T PF06456_consen 14 QMVSEKLGKKED---SRAITVDDELD--AKLELLRDTQ----RTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVRE 84 (229)
T ss_dssp -------------------CHHHHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHcCcccc---cchhhcchHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 478889985553 23443334443 2344332111 12234666666666665655555568999999999843
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHH
Q 017467 120 NQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQ 199 (371)
Q Consensus 120 ~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~ 199 (371)
. ...+|.+...+|++++.|++-+..|...+. -|+.-|+++.++++ +|.+.-...|+.-|-|+.+-..++..=..
T Consensus 85 ~----~~~l~~~f~~~~~~~~~~~~~~~~L~~~l~-~~~~~l~Tf~~kaI-~DT~~Tik~ye~aR~EY~ay~~~lke~~~ 158 (229)
T PF06456_consen 85 K----SPALGEEFSANGEAQRSLAKQGETLLKALK-RFLSDLNTFRNKAI-PDTLLTIKKYEDARFEYDAYRLWLKEMSD 158 (229)
T ss_dssp H-----CCGHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3 235999999999999999999999998865 47778888888765 56677777888888888887777743332
Q ss_pred hhccCC-CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHH
Q 017467 200 RVREAP-NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAIL 271 (371)
Q Consensus 200 K~re~~-~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL 271 (371)
+ +.+ ..-...+.+.+...++++|+.+..|-.+...-|.-+++.--++-..+|..++.+...||..+.+.|
T Consensus 159 e--~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~l 229 (229)
T PF06456_consen 159 E--LDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQAL 229 (229)
T ss_dssp ---TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--cCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhC
Confidence 2 122 222246888889999999998888877777777766663333334678999999999998876653
No 81
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=97.32 E-value=0.035 Score=52.48 Aligned_cols=161 Identities=12% Similarity=0.169 Sum_probs=105.2
Q ss_pred HhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhH
Q 017467 108 LSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE 186 (371)
Q Consensus 108 l~e~~~kYg~e~~~-~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~ 186 (371)
|+.-.+-|...+-. |.+|...+.+|..|+.++..|++.+.-|......-++.||+.++..|+.+. +-+...|+|.+.+
T Consensus 42 ~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~v-Ke~KK~FdK~Se~ 120 (215)
T cd07632 42 LSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTEV-STLKDLFGIASNE 120 (215)
T ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHH
Confidence 45556678775432 456777899999999999999999999999999999999999999888774 7777788887777
Q ss_pred HHHHHHHHHHHHHhhccCCCcccHHHHHHHHHH--HHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHH
Q 017467 187 AETQAVEVSKRQQRVREAPNPENVAKLHAAEAR--MQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYH 264 (371)
Q Consensus 187 ~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~K--l~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yh 264 (371)
.++-..-..+ ..|.|+ . ++..|++- +...+...-...-+-.-.++.++..-.-=-+.-|.+++.|+.+|+
T Consensus 121 ~d~AL~Knaq-lskkK~----~---E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFF 192 (215)
T cd07632 121 HDLSMAKYSR-LPKKRE----N---EKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFF 192 (215)
T ss_pred HHHHHHHHhh-CCcCCc----h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7554443321 112221 1 22224332 444444432222223333444433111011467889999999999
Q ss_pred HHHHHHHHHhHHH
Q 017467 265 LRIAAILGDVEAE 277 (371)
Q Consensus 265 q~~~~IL~~L~~~ 277 (371)
.+-.+++.+--..
T Consensus 193 hQGyeL~~~~~~~ 205 (215)
T cd07632 193 KKGAELFSKKLDS 205 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988764333
No 82
>KOG4429 consensus Uncharacterized conserved protein, contains SH3 and FCH domains [General function prediction only]
Probab=97.26 E-value=7.9e-05 Score=73.01 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=51.3
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeec
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKR 358 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i 358 (371)
..|.++|+|.+..++||....||++.+-+....|||.|+..|..|.||+.|+++.
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 3589999999999999999999999888889999999999999999999999864
No 83
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.00014 Score=74.64 Aligned_cols=61 Identities=30% Similarity=0.480 Sum_probs=52.1
Q ss_pred EEEEecCCCCCCCCCccCCCCCEEEEEE-eCCCCeeEEEe-CCeeeEecCCceeeccCCCCCC
Q 017467 305 LAEAIHPFTAASEKELSLGVGDYVVVRK-VSPSGWSEGEC-KGKAGWFPSANVEKRQRIPVSN 365 (371)
Q Consensus 305 ~arALydfea~~~~ELsf~~GDiI~Vl~-~~d~GWweGe~-~Gk~G~FPsnYVE~i~~lP~sk 365 (371)
.+|++|||..++..|+++..||++.+++ ....|||+|.. .|..|.||+.||+++...-++.
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~sS 66 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRLAVASS 66 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeeccccchh
Confidence 4789999999999999999999999875 44779999994 8999999999999987544433
No 84
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=97.14 E-value=0.00039 Score=74.54 Aligned_cols=57 Identities=28% Similarity=0.511 Sum_probs=47.9
Q ss_pred ceEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCC-eeEEEe-CCeeeEecCCceeeccC
Q 017467 303 YFLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSG-WSEGEC-KGKAGWFPSANVEKRQR 360 (371)
Q Consensus 303 ~~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~G-WweGe~-~Gk~G~FPsnYVE~i~~ 360 (371)
.....|||||.+.++..|++.+||.+.|+.-..+| |.+.+. +|+ ||+|+||+..+..
T Consensus 90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNS 148 (1157)
T KOG4278|consen 90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNS 148 (1157)
T ss_pred CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccc
Confidence 34689999999999999999999999999766554 777775 666 9999999987644
No 85
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=97.13 E-value=0.099 Score=50.00 Aligned_cols=133 Identities=19% Similarity=0.223 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhh----HHhhhhHHHHHHHHHHHHHHhhc
Q 017467 127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQR----YSRMRQEAETQAVEVSKRQQRVR 202 (371)
Q Consensus 127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~d----y~r~Rq~~e~~~~ev~rRq~K~r 202 (371)
.+|-+|..+..-++.|+.-...|...+-..+|.||+.-+.- -+...=.||.| |+|.|++.-....|.-|=+.|+|
T Consensus 68 ElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~k~E~-wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~r 146 (231)
T cd07643 68 EIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEE-WKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKAR 146 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 69999999999999999999999999999999999887662 22234445555 99999999888888777776766
Q ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHhhHhh--HhhHHHHHHHHHHHHH
Q 017467 203 EAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAA--IEAQQHRLT--FQRLVAMVEGEKNYHL 265 (371)
Q Consensus 203 e~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~--ve~qqqrlt--~~~L~~~veae~~yhq 265 (371)
+.. ++.-..|.+|..-...-...+.++.+ .++-+ +|+ -.|.+ ++.|...++.|..-.-
T Consensus 147 Kg~-~~~~~~ldsa~~dvn~k~~~lEe~ek---~alR~aLiEE-R~Rfc~Fvs~l~pVl~~e~~ml~ 208 (231)
T cd07643 147 KGK-GDLQPQLDSAMQDVNDKYLLLEETEK---KAVRNALIEE-RGRFCTFVSFLKPVLDEEISMLG 208 (231)
T ss_pred ccC-CccchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHh
Confidence 543 33224555555433333333333333 22332 232 23433 4667777777665543
No 86
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=97.09 E-value=0.19 Score=47.50 Aligned_cols=185 Identities=13% Similarity=0.181 Sum_probs=107.8
Q ss_pred HHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 017467 66 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE 145 (371)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~ 145 (371)
-+++|-+||.++-+--.-.|++.-+ ...+|.++..-|+--. ...|++|+..+|++...|...
T Consensus 24 Le~~Lk~l~~~~e~lv~~r~ela~~--------------~~~f~~s~~~L~~~E~----~~~Ls~al~~la~~~~ki~~~ 85 (224)
T cd07623 24 LDQQLRKLHASVESLVNHRKELALN--------------TGSFAKSAAMLSNCEE----HTSLSRALSQLAEVEEKIEQL 85 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHHHHH
Confidence 4667777776655544444444433 3356777777776322 246999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHhhh--cChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHh---hccCCCcc----cHHHHHHH
Q 017467 146 QEDFNRLLSSQVLDPLRAMIT--GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQR---VREAPNPE----NVAKLHAA 216 (371)
Q Consensus 146 ~~~l~~~~~~~~~~PL~~~~~--~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K---~re~~~~d----~~~kl~~A 216 (371)
.+.....--..|.+||.-++- ++.+. +-.+-.+..+..+.-..++.+++.+ ..-..++| .-.+|+.|
T Consensus 86 ~~~qa~~d~~~l~e~L~eY~r~i~svk~----~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~ 161 (224)
T cd07623 86 HGEQADTDFYILAELLKDYIGLIGAIKD----VFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEW 161 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 999888888999999998875 22222 2222222223333333333333332 11110121 12345555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh-hH-hhHHHHHHHHHHHHHHHHHHHHHh
Q 017467 217 EARMQELKANMAILGKEAAAALAAIEAQQHRL-TF-QRLVAMVEGEKNYHLRIAAILGDV 274 (371)
Q Consensus 217 e~Kl~elk~~m~~lgkea~~am~~ve~qqqrl-t~-~~L~~~veae~~yhq~~~~IL~~L 274 (371)
+.+.+..+..+..+..-....|...+. .++ .+ ..|..+++.+..|..++.+.-+.+
T Consensus 162 e~~~~~a~~~fe~is~~~k~El~rF~~--erv~dfk~~l~~~le~~i~~q~~~~~~We~~ 219 (224)
T cd07623 162 EAKVDRGQKEFEEISKTIKKEIERFEK--NRVKDFKDIIIKYLESLLNTQQQLIKYWEAF 219 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666666665555555555443 221 12 357778888888888877665543
No 87
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.08 E-value=0.07 Score=49.63 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=83.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh--cChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccC
Q 017467 127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT--GAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA 204 (371)
Q Consensus 127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~--~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~ 204 (371)
.|+.|+-.+|.+..++...-..+...+..+|++||+.|+. ++++..-++ =+..+...|....++.++..+.
T Consensus 67 ~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~----R~~~q~~~e~~~e~L~~k~~~l--- 139 (200)
T cd07624 67 ELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVLKR----RDQFQIEYELSVEELNKKRLEL--- 139 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---
Confidence 5999999999999999999999999999999999998875 222221111 1122333455555555554443
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH-hhHHHHHHHHHHHHHHHHHHHHH
Q 017467 205 PNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGD 273 (371)
Q Consensus 205 ~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~-~~L~~~veae~~yhq~~~~IL~~ 273 (371)
..++..|+.+++.....| ..-+...+. +.+..+ ..|..|++.+..|++.+.+.-+.
T Consensus 140 -----~~ev~~a~~~~e~~~~~~-------~~E~~rF~~-~K~~d~k~~l~~~a~~qi~~~~~~~~~We~ 196 (200)
T cd07624 140 -----LKEVEKLQDKLECANADL-------KADLERWKQ-NKRQDLKKILLDMAEKQIQYYEQCLAAWEE 196 (200)
T ss_pred -----HHHHHHHHHHHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 246777778887776653 222222222 122223 45888999999999998766544
No 88
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=97.05 E-value=0.00045 Score=76.40 Aligned_cols=55 Identities=24% Similarity=0.429 Sum_probs=46.9
Q ss_pred EEEEecCCCCC--------CCCCccCCCCCEEEEEE-eCCCCeeEEEeCCeeeEecCCceeecc
Q 017467 305 LAEAIHPFTAA--------SEKELSLGVGDYVVVRK-VSPSGWSEGECKGKAGWFPSANVEKRQ 359 (371)
Q Consensus 305 ~arALydfea~--------~~~ELsf~~GDiI~Vl~-~~d~GWweGe~~Gk~G~FPsnYVE~i~ 359 (371)
..+|+|||++- .+.||.|++|++|.|+- ++.+|+|.|+++|+.|++|+|+|.++.
T Consensus 1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred eeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeeccccccccccccccccccc
Confidence 57899999873 24589999999999985 556699999999999999999998763
No 89
>KOG4792 consensus Crk family adapters [Signal transduction mechanisms]
Probab=97.03 E-value=0.0014 Score=62.53 Aligned_cols=57 Identities=35% Similarity=0.428 Sum_probs=49.1
Q ss_pred eEEEEecCCCCC--CCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeeccC
Q 017467 304 FLAEAIHPFTAA--SEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQR 360 (371)
Q Consensus 304 ~~arALydfea~--~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~ 360 (371)
..++++.+-.|. +...|.+.+||+|.|++..-+|-|+|+++|+.|.||..||+....
T Consensus 228 a~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~ 286 (293)
T KOG4792|consen 228 AYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDV 286 (293)
T ss_pred hheeeehhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeecc
Confidence 467888876654 455799999999999999999999999999999999999987654
No 90
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=96.98 E-value=0.0007 Score=71.61 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=52.3
Q ss_pred hhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCC-C-CCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017467 80 TKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENN-Q-NINENI-LPKAAAIYGDARKHVEKEQEDFNRLLSSQ 156 (371)
Q Consensus 80 ~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~-~-~~~~~~-l~~A~~~~g~a~~~~~~~~~~l~~~~~~~ 156 (371)
+++|=|+|++--..+|+.-....-++.+++.....|--|-- + -++|.. .+..|-+||.-.++++++|--|..+-..-
T Consensus 32 tnkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~~v~~Ase~ 111 (812)
T KOG1451|consen 32 TNKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMRMVGNASES 111 (812)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 35566666666666666665555555566655554422210 0 012322 45666677777777777777777776666
Q ss_pred hhhHHHHh---hhcChhhh
Q 017467 157 VLDPLRAM---ITGAPLED 172 (371)
Q Consensus 157 ~~~PL~~~---~~~~~~e~ 172 (371)
.|+||..+ +-|..+|.
T Consensus 112 li~PlekFRkEqIG~~KE~ 130 (812)
T KOG1451|consen 112 LIEPLEKFRKEQIGTLKEE 130 (812)
T ss_pred HHhHHHHHHHHHhhhhHHH
Confidence 77776443 33444544
No 91
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.88 E-value=0.45 Score=45.65 Aligned_cols=207 Identities=17% Similarity=0.197 Sum_probs=123.7
Q ss_pred HHHhhhccCCCCCCccceecHHHHHHHHHHHHH-HhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccC
Q 017467 41 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKL-YRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN 119 (371)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~ 119 (371)
-+||||. --| | |=.||+...=|-|. |..++ ++...++.++..-.--.-...-+|.++...|...
T Consensus 5 k~lkq~~-~p~---d----~~~el~~~rp~vk~~y~~~~-------~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E 69 (230)
T cd07625 5 KTLKQFA-PPY---D----EYTELAEFRPLVKSIYLTAQ-------DLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEE 69 (230)
T ss_pred HhhhccC-cCC---C----CCHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4689997 233 2 44688877777774 44443 3344444444433322233336777777777765
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC--hhhh--hhhhhhhHHhhhhHHHHHHHHHH
Q 017467 120 NQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA--PLED--ARHLAQRYSRMRQEAETQAVEVS 195 (371)
Q Consensus 120 ~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~--~~e~--~R~L~~dy~r~Rq~~e~~~~ev~ 195 (371)
+ ...||+|+..+|.....+++....-..+.-..|-|||..++.-. .||. -||+. ||+=..++..=..
T Consensus 70 ~----~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~-----~re~~qAq~~~~~ 140 (230)
T cd07625 70 T----HHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDAYVVKEALTNRHLL-----MRELIQAQQNTKS 140 (230)
T ss_pred c----cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 4 34699999999999999999999999999999999999887632 3442 44444 4444444444444
Q ss_pred HHHH--hhccCC--CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH------hhH-hhHHHHHHHHHHHH
Q 017467 196 KRQQ--RVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR------LTF-QRLVAMVEGEKNYH 264 (371)
Q Consensus 196 rRq~--K~re~~--~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqr------lt~-~~L~~~veae~~yh 264 (371)
||.. |.+-++ +|| |+-.|..-++|....-..+......-=..+.....+ -.+ .-|..++..+..||
T Consensus 141 K~~~~~rlk~s~~i~~~---KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~e 217 (230)
T cd07625 141 KQEAARRLKAKRDINPL---KVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYE 217 (230)
T ss_pred HHHHHHHHhcCCCCChH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 233222 455 777777777766555444433222211111111111 012 23667888888999
Q ss_pred HHHHHHHHHh
Q 017467 265 LRIAAILGDV 274 (371)
Q Consensus 265 q~~~~IL~~L 274 (371)
++....++.+
T Consensus 218 rk~l~~lE~~ 227 (230)
T cd07625 218 RKKLSLLERI 227 (230)
T ss_pred HHHHHHHHhc
Confidence 8888777654
No 92
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=96.69 E-value=0.4 Score=45.20 Aligned_cols=178 Identities=15% Similarity=0.227 Sum_probs=122.1
Q ss_pred HHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 017467 86 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 165 (371)
Q Consensus 86 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~ 165 (371)
++++-++.+...=+--.+.-+.||+++..-|..-+ .+..|-..+|++++.+++==..|...++ -|+.-|.+++
T Consensus 20 ~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p------~l~~af~~~aet~k~l~kng~~Ll~al~-~f~s~l~T~~ 92 (201)
T cd07660 20 SVLRLARALASQFYQMLQTQKALGDAFADLSQKSP------ELQEEFTYNAETQKLLCKNGETLLGALN-FFVSSLNTLV 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 35555555555555444445589999999998754 4688888999999999987777777775 4677788888
Q ss_pred hcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 017467 166 TGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQ 245 (371)
Q Consensus 166 ~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qq 245 (371)
++++ +|-..=...|+.-|=|+.+=..|++.-...-+ .++...+++.+..++++.|..+..|=+++.--|.-+++.-
T Consensus 93 ~kai-~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~---~~~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenr 168 (201)
T cd07660 93 NKTM-EDTLMTVKQYESARIEYDAYRNDLEALNLGPR---DAATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENK 168 (201)
T ss_pred Hhhc-cHHHHHHHHHHhhhHhHHHHhccHHHcccCCC---ccchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 8765 33344445666666666665556543111111 1233456777777777777777777777777777776644
Q ss_pred hHhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 017467 246 HRLTFQRLVAMVEGEKNYHLRIAAILGDV 274 (371)
Q Consensus 246 qrlt~~~L~~~veae~~yhq~~~~IL~~L 274 (371)
-++-..||.-|+.|.-.||..+.++|++.
T Consensus 169 v~vm~~QL~~f~~a~~ay~sgn~~~L~~~ 197 (201)
T cd07660 169 VKVMHKQLLLFHNAISAYFSGNQKQLEQT 197 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33334789999999999999999998864
No 93
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=96.65 E-value=0.47 Score=45.23 Aligned_cols=163 Identities=17% Similarity=0.282 Sum_probs=101.4
Q ss_pred hhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHh
Q 017467 103 EAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSR 182 (371)
Q Consensus 103 E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r 182 (371)
+-+..|+..+.-|...-. .++..+|-.|++....+.+-++..-.-+-..|+.||..+-+.= ..+|-=-....+
T Consensus 46 Dk~D~lak~l~~yA~~E~-----~~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~c--K~~r~elK~~~~ 118 (219)
T PF06730_consen 46 DKGDELAKQLQDYANTEN-----PNLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGTIC--KHARDELKKFNK 118 (219)
T ss_pred hhhHHHHHHHHHHHhcCC-----ccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHH
Confidence 344467777777876533 3466688999999999999999999999999999999987511 111110111111
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhh-HHHHHHHHH
Q 017467 183 MRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQR-LVAMVEGEK 261 (371)
Q Consensus 183 ~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~-L~~~veae~ 261 (371)
.|..--.+... ..|.|.. +|-+-..+-+|+..|+-..-......+.++..|..+|.|--+ .+.. +..||..|.
T Consensus 119 ar~kEikq~~~----Leklr~k-~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~-DlK~i~sdFv~iEM 192 (219)
T PF06730_consen 119 ARNKEIKQLKQ----LEKLRQK-NPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQKLK-DLKKIFSDFVTIEM 192 (219)
T ss_pred HHHHHHHHHHH----HHHHHcc-CCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 11111111111 1233321 233223466788877777766666667777777777762211 1333 557999999
Q ss_pred HHHHHHHHHHHHhHHHH
Q 017467 262 NYHLRIAAILGDVEAEM 278 (371)
Q Consensus 262 ~yhq~~~~IL~~L~~~l 278 (371)
.||-.+.+++..-...+
T Consensus 193 ~fHaKALEv~T~a~q~i 209 (219)
T PF06730_consen 193 VFHAKALEVYTAAYQDI 209 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999987655443
No 94
>KOG4575 consensus TGc (transglutaminase/protease-like) domain-containing protein involved in cytokinesis [Cell cycle control, cell division, chromosome partitioning]
Probab=96.56 E-value=0.0032 Score=67.22 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=43.6
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe--CCeeeEecCCceeec
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC--KGKAGWFPSANVEKR 358 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i 358 (371)
..++|+|.+.++.+++|.|.+||+|.++.-.+.-||-+.+ +...|+||+|||..+
T Consensus 9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhcL 65 (874)
T KOG4575|consen 9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHCL 65 (874)
T ss_pred ceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceeec
Confidence 4589999999999999999999999998765444444443 455699999999443
No 95
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=96.49 E-value=0.0015 Score=68.07 Aligned_cols=57 Identities=19% Similarity=0.457 Sum_probs=50.2
Q ss_pred ceEEEEecCCCCCCCCCccCCCCCE-EEEEEeCCCCeeEEEe--CCeeeEecCCceeecc
Q 017467 303 YFLAEAIHPFTAASEKELSLGVGDY-VVVRKVSPSGWSEGEC--KGKAGWFPSANVEKRQ 359 (371)
Q Consensus 303 ~~~arALydfea~~~~ELsf~~GDi-I~Vl~~~d~GWweGe~--~Gk~G~FPsnYVE~i~ 359 (371)
...+.++|+|.+..+.+|+|..||. ..+++..+..||..+. .|..|++|+|||....
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~ 70 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNR 70 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccc
Confidence 3578999999999999999999999 6778888899999874 6889999999998753
No 96
>KOG3775 consensus Mitogen-activated protein kinase scaffold protein JIP [Signal transduction mechanisms]
Probab=96.45 E-value=0.0015 Score=65.95 Aligned_cols=57 Identities=28% Similarity=0.419 Sum_probs=51.2
Q ss_pred eEEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceeeccC
Q 017467 304 FLAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEKRQR 360 (371)
Q Consensus 304 ~~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~i~~ 360 (371)
..-++++.|.|..++||-|..||.|.|-...++-|++|. ++|+.|+||+.|+-++..
T Consensus 263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~ 321 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDG 321 (482)
T ss_pred hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCC
Confidence 345889999999999999999999999988899999998 589999999999987754
No 97
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=96.40 E-value=0.87 Score=42.75 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=89.0
Q ss_pred hHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhH
Q 017467 107 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE 186 (371)
Q Consensus 107 ~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~ 186 (371)
.+|.++.+-|.--. +..++.++..+|++...+..........---.|.+||+-|+.- ..-.|.+-.+=.+..+.
T Consensus 43 efa~~~~~L~~~E~----~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~--~~Svk~~~~~R~~~~~~ 116 (216)
T cd07627 43 EFAETLEALSSLEL----SKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDEYIRS--IGSVRAAFAQRQKLWQY 116 (216)
T ss_pred HHHHHHHHHHHhhc----chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 56666777676422 3479999999999999999888887777777888899888651 11122222222222333
Q ss_pred HHHHHHHHHHHHH---hhccCC--Cc----ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH-hhH-hhHHH
Q 017467 187 AETQAVEVSKRQQ---RVREAP--NP----ENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHR-LTF-QRLVA 255 (371)
Q Consensus 187 ~e~~~~ev~rRq~---K~re~~--~~----d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqr-lt~-~~L~~ 255 (371)
++....++.+++. |..... ++ ....+|+.++.+.+..+.....++..+...|...+. .+ ..+ ..|..
T Consensus 117 ~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~--~r~~dfk~~l~~ 194 (216)
T cd07627 117 WQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFER--ERVEDFRNSVEI 194 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3333333333321 111000 01 112344555555555566666666656666655543 22 112 45777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017467 256 MVEGEKNYHLRIAAILG 272 (371)
Q Consensus 256 ~veae~~yhq~~~~IL~ 272 (371)
+++++..+++.+.++=+
T Consensus 195 ~~e~~ie~~k~~ie~We 211 (216)
T cd07627 195 YLESAIESQKELIELWE 211 (216)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888887765433
No 98
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=96.17 E-value=1.2 Score=42.08 Aligned_cols=178 Identities=16% Similarity=0.232 Sum_probs=118.5
Q ss_pred HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 017467 85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENIL-PKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA 163 (371)
Q Consensus 85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l-~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~ 163 (371)
+.+++.++.++..=+--...-+.||+.++--|..-+ .+ |.+...+|+|++.+++-...|...++- |+.-|.+
T Consensus 19 ~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~------~~a~~~f~~~~~a~r~~~k~g~~ll~~l~~-~~~~l~T 91 (203)
T cd00011 19 ESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDP------ELAGEEFGYNAEAQKLLCKNGETLLGAVNF-FVSSINT 91 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH
Confidence 457777777776666655555699999999998865 23 788899999999999999999888864 7777899
Q ss_pred hhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcc---cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 017467 164 MITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPE---NVAKLHAAEARMQELKANMAILGKEAAAALAA 240 (371)
Q Consensus 164 ~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d---~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ 240 (371)
+.++++- |-..=...|..-|-|+.+-..++..= ...+.|+ -..|.+.+...+++.|+.+.-|-.+..-=|.-
T Consensus 92 ~~~kai~-DT~lTI~~ye~aR~EY~a~~l~~ke~----~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~l 166 (203)
T cd00011 92 LVTKAIE-DTLLTVKQYEAARLEYDAYRLDLKEL----SLEPRDDTAGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKF 166 (203)
T ss_pred HHhhhcc-hHHHHHHHHHHHHHhHHHHHHHHHHh----cccCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988764 33333445555555555544444211 0001111 12466666666666666666665555444554
Q ss_pred HHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 017467 241 IEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDV 274 (371)
Q Consensus 241 ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L 274 (371)
+++.--++-..+|..+..+...||..+..+|++.
T Consensus 167 L~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~ 200 (203)
T cd00011 167 LEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQT 200 (203)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5553333334689999999999999999988764
No 99
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=96.06 E-value=0.0022 Score=67.40 Aligned_cols=55 Identities=20% Similarity=0.439 Sum_probs=46.1
Q ss_pred eEEEEecCCCCCCCC-------CccCCCCCEEEEEEeCCCCeeEEEeC-----CeeeEecCCceeec
Q 017467 304 FLAEAIHPFTAASEK-------ELSLGVGDYVVVRKVSPSGWSEGECK-----GKAGWFPSANVEKR 358 (371)
Q Consensus 304 ~~arALydfea~~~~-------ELsf~~GDiI~Vl~~~d~GWweGe~~-----Gk~G~FPsnYVE~i 358 (371)
..++|+|||+|..++ .|+|.+||++.|+++.|.+||.+... +..|.+|+...++.
T Consensus 215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qer 281 (542)
T KOG0609|consen 215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQER 281 (542)
T ss_pred eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHH
Confidence 468999999987655 68999999999999999999999853 46799999776653
No 100
>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]
Probab=96.03 E-value=0.0024 Score=68.25 Aligned_cols=55 Identities=25% Similarity=0.354 Sum_probs=48.0
Q ss_pred EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeeccC
Q 017467 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKRQR 360 (371)
Q Consensus 305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i~~ 360 (371)
.+.++|||.+.+..||+..+||++.|+.. .-+||.+.. .|+.||+|+|-+..+.+
T Consensus 502 ~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~ 557 (721)
T KOG3557|consen 502 WVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQP 557 (721)
T ss_pred eeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCC
Confidence 68899999999999999999999998854 467999885 79999999998876654
No 101
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=95.83 E-value=1.8 Score=41.30 Aligned_cols=147 Identities=20% Similarity=0.211 Sum_probs=88.8
Q ss_pred hHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhH
Q 017467 107 KLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQE 186 (371)
Q Consensus 107 ~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~ 186 (371)
.+|.++.--|+- +++.|++++..+|+..-.|.++......+---.|-|+|+-++.- ..-++-+-++==|.=+.
T Consensus 63 ~fs~al~~L~~~-----E~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~--~~A~K~~l~rR~ral~~ 135 (219)
T cd07621 63 KISAALTQLATS-----EPTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRD--TQAAKDLLYRRLRCLAN 135 (219)
T ss_pred HHHHHHHHhhcc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 445555544442 44689999999999999998877777666666888999887751 11122222111111233
Q ss_pred HHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhh-H-hhHHHHHHHHHHHH
Q 017467 187 AETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYH 264 (371)
Q Consensus 187 ~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt-~-~~L~~~veae~~yh 264 (371)
.+.-...+++++.|. .++.+||.+.++....+..+++-+...|...+. +|+. + ..|+.+.|.+..--
T Consensus 136 ~q~A~k~L~KaR~k~---------~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~--~Rv~~fk~~lve~aE~~ik~A 204 (219)
T cd07621 136 YENANKNLEKARAKN---------KDVHAAEAAQQEACEKFESMSESAKQELLDFKT--RRVAAFRKNLVELAELEIKHA 204 (219)
T ss_pred HHHHHHHHHHhHhch---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555665542 366667777777777776676667777776665 4432 2 35777777776443
Q ss_pred HHHHHHH
Q 017467 265 LRIAAIL 271 (371)
Q Consensus 265 q~~~~IL 271 (371)
+...++|
T Consensus 205 k~~~~~l 211 (219)
T cd07621 205 KAQIQLL 211 (219)
T ss_pred HHHHHHH
Confidence 4444443
No 102
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.71 E-value=0.0094 Score=68.76 Aligned_cols=198 Identities=18% Similarity=0.160 Sum_probs=117.0
Q ss_pred HHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC
Q 017467 89 KVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA 168 (371)
Q Consensus 89 r~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~ 168 (371)
+.+-+.|++--|....++-=|.+|...|.-.- ++ .-...+.+...|.+|-.
T Consensus 827 q~~~~~ia~he~ri~~i~~r~~~m~~~~~f~a---ed---------vk~~~~~L~~~~~slk~----------------- 877 (2399)
T KOG0040|consen 827 QALLAEIANHEPRIQEVTSRGNKMVEEGHFAA---ED---------VRSRLKSLNQNWESLKA----------------- 877 (2399)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhccccc---HH---------HHHHHHHHHHHHHHHHH-----------------
Confidence 45667777788888877777777777665421 22 12222334444444332
Q ss_pred hhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC--CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 017467 169 PLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP--NPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQH 246 (371)
Q Consensus 169 ~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~--~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqq 246 (371)
++.-|+.|-+-+.+-|++=+-+.|-+-.... +|.+ ++|.--+...|++.+.--++.+..++. -.+.|.++.+|
T Consensus 878 -ka~~r~~dle~s~q~~qy~ad~~eae~w~~e-kEpi~~stdygKdedsa~allkkhea~~~dl~a-f~~~i~~lr~q-- 952 (2399)
T KOG0040|consen 878 -KASQRRQDLEDSLQAQQYLADANEAESWMRE-KEPIVGSTDYGKDEDSAEALLKKHEALLSDLEA-FGDSIQALREQ-- 952 (2399)
T ss_pred -HHHhcccchhhHHHHHHHHHHHhhHHHHhhc-cCcccccccccchhhhHHHHHHHHHHHHHHHHH-HhHHHHHHHHH--
Confidence 2333455545555556655555554333221 1222 556555677777777666665433332 11112222111
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcCCCCCCCCCCCCCcccccceEEEEecCCCCCCCCCccCCCCC
Q 017467 247 RLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSEKQRKESAPPVIPSENSSQKAVYFLAEAIHPFTAASEKELSLGVGD 326 (371)
Q Consensus 247 rlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~ser~r~es~~pp~~~~s~s~~~~~~~arALydfea~~~~ELsf~~GD 326 (371)
-..| ++. . + |.. ..+..++.++|+|...++.+.+.+.||
T Consensus 953 -----------------a~~c--------------q~Q-~-t-pv~-------~~g~~~v~alyd~q~kSprev~mKkgD 991 (2399)
T KOG0040|consen 953 -----------------ANAC--------------RQQ-E-A-PVE-------DVGKECVLALYDYQEKSPREVTMKKGD 991 (2399)
T ss_pred -----------------HHhh--------------hcc-C-C-chh-------hHHHHHHHHHHHHHhcCHHHHHHhhhh
Confidence 1111 111 1 1 110 113346789999999999999999999
Q ss_pred EEEEEEeCCCCeeEEEeCCeeeEecCCceeeccCC
Q 017467 327 YVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQRI 361 (371)
Q Consensus 327 iI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~~l 361 (371)
+++.+....-.||.++++.+.|++|..||+.+.+-
T Consensus 992 vltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen 992 VLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred HHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence 99988888889999999999999999999987654
No 103
>KOG3632 consensus Peripheral benzodiazepine receptor PRAX-1 [Signal transduction mechanisms; Cytoskeleton]
Probab=95.66 E-value=0.0095 Score=66.39 Aligned_cols=57 Identities=30% Similarity=0.386 Sum_probs=47.1
Q ss_pred eEEEEecCCCC------CCCCCccCCCCCEEEEEEeC-CCCeeEEEe-CCeeeEecCCceeeccC
Q 017467 304 FLAEAIHPFTA------ASEKELSLGVGDYVVVRKVS-PSGWSEGEC-KGKAGWFPSANVEKRQR 360 (371)
Q Consensus 304 ~~arALydfea------~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~-~Gk~G~FPsnYVE~i~~ 360 (371)
..+.+.|+|.+ ..+.||.+..|++|.|.-.. .+|+++|+. .|+.|.+|+|||+.+.+
T Consensus 448 q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmdEdgfyegeL~dgrrglvPsnFVe~v~d 512 (1335)
T KOG3632|consen 448 QPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMDEDGFYEGELRDGRRGLVPSNFVEVVTD 512 (1335)
T ss_pred ceEEEEEeccCCcCCCCCCccccccccceEEEEecCCCccccceeeeecccccCCCchheEEecc
Confidence 35788898877 33468999999999998654 558999995 89999999999998754
No 104
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.60 E-value=1.6 Score=40.15 Aligned_cols=40 Identities=10% Similarity=0.264 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
.|+.++-.+|..+..++...+.|...+..+|++||+.|+.
T Consensus 58 ~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~ 97 (185)
T cd07628 58 EITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLH 97 (185)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999998875
No 105
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.39 E-value=1.3 Score=42.85 Aligned_cols=142 Identities=11% Similarity=0.106 Sum_probs=82.6
Q ss_pred HhHHHhhhhc---cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--Chhhh--h-hhhhhh
Q 017467 108 LSEDCCRYGA---ENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLED--A-RHLAQR 179 (371)
Q Consensus 108 l~e~~~kYg~---e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e~--~-R~L~~d 179 (371)
+.+....||. .|+ +.+ ..++.+|-.+|.++..++..-+.+...+..+|++||+.|+.= +++-. - =.+..+
T Consensus 87 y~~~~~~fgk~~~lws-~~E-~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~ 164 (243)
T cd07666 87 YFEELKEYGPIYTLWS-ASE-EELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAE 164 (243)
T ss_pred HHHHHHHHHHHHHHHh-ccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554 666 334 459999999999999999999999999999999999998752 12211 0 123334
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH-hhHHHHHH
Q 017467 180 YSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVE 258 (371)
Q Consensus 180 y~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~-~~L~~~ve 258 (371)
|+++++...... +| + .++++.+.++...+...++....-|...+.+-.+ .+ +-+..+++
T Consensus 165 le~k~e~l~k~~---------------~d---r-~~~~~ev~~~e~kve~a~~~~k~e~~Rf~~~k~~-D~k~~~~~yae 224 (243)
T cd07666 165 LDSKVEALANKK---------------AD---R-DLLKEEIEKLEDKVECANNALKADWERWKQNMQT-DLRSAFTDMAE 224 (243)
T ss_pred HHHHHHHHHhhh---------------hh---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 444333322211 11 2 2334444444444333333344444433332111 12 35778999
Q ss_pred HHHHHHHHHHHHH
Q 017467 259 GEKNYHLRIAAIL 271 (371)
Q Consensus 259 ae~~yhq~~~~IL 271 (371)
.+..|++++...-
T Consensus 225 ~~i~~~~~~~~~W 237 (243)
T cd07666 225 NNISYYEECLATW 237 (243)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998886643
No 106
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=95.29 E-value=2.9 Score=40.16 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=67.6
Q ss_pred CCCCccceecHHHH--HHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhc-cCCCCCCCCc
Q 017467 51 YERSDVMVIDEVEM--QRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGA-ENNQNINENI 127 (371)
Q Consensus 51 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~-e~~~~~~~~~ 127 (371)
|.-+|..+.|.... .-+++|-+||.++-.--.-.|+++-+.. .+|.++..-|. |. ...
T Consensus 17 ~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~--------------efa~s~~~L~~~E~-----~~~ 77 (234)
T cd07664 17 MNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTA--------------AFAKSAAMLGNSED-----HTA 77 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHcCcc-----cch
Confidence 44555655554432 2467788888777655555555554443 45555555565 32 246
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 128 LPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 128 l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
|++||..+|+....|......-....--.|-+||..++-
T Consensus 78 ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR 116 (234)
T cd07664 78 LSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIR 116 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 999999999999999998888888888889999988874
No 107
>KOG3601 consensus Adaptor protein GRB2, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=94.96 E-value=0.004 Score=58.68 Aligned_cols=52 Identities=27% Similarity=0.444 Sum_probs=45.5
Q ss_pred EEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEEeCCeeeEecCCceee
Q 017467 306 AEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPSANVEK 357 (371)
Q Consensus 306 arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe~~Gk~G~FPsnYVE~ 357 (371)
+.++++|.+...+||+|.+||.+.+++.. +.+|+..+..|..|++|.||.+.
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~ 55 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRM 55 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCccccccc
Confidence 46789999999999999999999888654 44899999999999999999853
No 108
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=94.88 E-value=3.9 Score=39.39 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=95.9
Q ss_pred chhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 017467 79 GTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVL 158 (371)
Q Consensus 79 ~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~ 158 (371)
.|+.+|+ ++.|++.++.--.+...++||--. . +...-.||.||+.+.+.++++....+.+...+-.++|
T Consensus 30 ~G~~Y~k----al~a~~~a~~~y~dAl~Kige~A~----~---s~gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli 98 (232)
T cd07646 30 MGKNYEK----ALASVTFAAKGYFDALVKMGELAS----E---SQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELL 98 (232)
T ss_pred HhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhh----c---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554 556777666655566555554322 1 1112359999999999999999999999999999999
Q ss_pred hHHHHhhhcChhhhhhhhhhhHHhhhhHH-------HHHHHHHHHHHHhhccCC-CcccHHHHHHHHHHHHHH-HHHHHH
Q 017467 159 DPLRAMITGAPLEDARHLAQRYSRMRQEA-------ETQAVEVSKRQQRVREAP-NPENVAKLHAAEARMQEL-KANMAI 229 (371)
Q Consensus 159 ~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~-------e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~Kl~el-k~~m~~ 229 (371)
.||..=+.. |.+.+..-.|+-..+. |.-+.|+. +..|.+..+ |+ .+...-|.+.-+. -..-..
T Consensus 99 ~pLE~k~E~----D~k~i~a~~Kky~~e~k~k~~sleK~qseLK-KlRrKsqg~k~~---~ky~~ke~q~~~~~~~~q~e 170 (232)
T cd07646 99 TQLEQKVEL----DSRYLTAALKKYQTEHRSKGESLEKCQAELK-KLRKKSQGSKNP---QKYSDKELQYIEAISNKQGE 170 (232)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCCc---hhhHHHHHHHHHHHHHHHHH
Confidence 998776653 4444444444443333 44444432 222221111 21 1222122122211 111112
Q ss_pred hhHHHHHHHHHH-HHHhhHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Q 017467 230 LGKEAAAALAAI-EAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD 273 (371)
Q Consensus 230 lgkea~~am~~v-e~qqqrlt--~~~L~~~veae~~yhq~~~~IL~~ 273 (371)
|......+.... -+.-.|+. +.+-+++......||.....+|.+
T Consensus 171 le~f~~~~~k~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~ 217 (232)
T cd07646 171 LENYVSDGYKTALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQ 217 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233233333332 22234443 355666777778899888888765
No 109
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=94.74 E-value=0.86 Score=50.91 Aligned_cols=184 Identities=17% Similarity=0.285 Sum_probs=113.2
Q ss_pred ecHHHHHHH---HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHH
Q 017467 59 IDEVEMQRH---QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIY 135 (371)
Q Consensus 59 ~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~ 135 (371)
+|+.|...| ..|+|++.+-.++...++++|-.-|-|.. + -.+-..+| + .+...+-++..|
T Consensus 23 ~~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~-------~----~~d~~~~~---~---~~~~~~~~l~~f 85 (785)
T KOG0521|consen 23 LDVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGK-------G----LKDLFSLG---Q---DEEVISETLQKF 85 (785)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHH-------H----HHHHHHhc---c---CchhhhhHHHHH
Confidence 477777655 57888888888888888888877766531 1 12224444 2 234578889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-CcccHHHHH
Q 017467 136 GDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLH 214 (371)
Q Consensus 136 g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-~~d~~~kl~ 214 (371)
..+..++......|...+...+..||..++.+|+.++ +-+...+++..++.+.-..-..+...+.| +. .++..+.|.
T Consensus 86 s~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~v-~~~kk~f~ka~~~~d~a~~k~~~l~k~~~-~~~~~e~~~~l~ 163 (785)
T KOG0521|consen 86 SKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHEV-KELKKLFEKASEEYDLALVKYSRLPKKRR-SKVKTEVEEELA 163 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhHHHHHHHhhHHHHHHHhhhhhhccc-cchhHHHHHHHH
Confidence 9999999999999999999999999999999999876 33344556666777555554433322222 21 334333455
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHH
Q 017467 215 AAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIA 268 (371)
Q Consensus 215 ~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~ 268 (371)
.+..+|+-..-- ...+++.++.-.+---+.-+..+++|+..|+++-.
T Consensus 164 ~~r~~f~~~~~~-------y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~ 210 (785)
T KOG0521|consen 164 AARRKFQLTALD-------YVLALNVLQAKKQFEILETLLGFMHAQINFFKQGE 210 (785)
T ss_pred HHHHHHHHHHHH-------HHHhhhhhhcccchHHHHHHHHHHHhccchhcccH
Confidence 444444433222 22222222221111113456667777776665443
No 110
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=94.66 E-value=4.3 Score=38.87 Aligned_cols=178 Identities=11% Similarity=0.131 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Q 017467 85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAM 164 (371)
Q Consensus 85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~ 164 (371)
|.|.+++-|++.++.--.+++-++||--.- .+ ..-.||.+|+.+.+.++++.+..+.....+--.+|.||-.=
T Consensus 30 k~Y~KA~~a~~~A~~~y~dal~Kige~A~~----s~---~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k 102 (226)
T cd07645 30 KNYEKAVNAMVLAGKAYYDGVAKIGEIAAV----SP---VSKELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERK 102 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889998888888887777775543 11 12359999999999999999998888888888999998776
Q ss_pred hhcChhhh---hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-CcccHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHH
Q 017467 165 ITGAPLED---ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-NPENVAKLHAAEAR-MQELKANMAILGKEAAAALA 239 (371)
Q Consensus 165 ~~~~~~e~---~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-~~d~~~kl~~Ae~K-l~elk~~m~~lgkea~~am~ 239 (371)
+..|.+=. -.+--..|+...-.+|....|+.+-+.| +..+ ||. |-..=|.. ++.....-..|......+..
T Consensus 103 ~elD~kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRK-sqg~kn~~---kye~Ke~~~~e~~~~~q~el~~f~~~~~k 178 (226)
T cd07645 103 TDLDVKYMTATLKRYQTEHKNKLDSLEKSQADLKKIRRK-SQGRRNAS---KYEHKENEYLETVTSRQSDIQKFIADGCR 178 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554321 1122223444334446666665333323 2111 332 21111111 12222222333333444433
Q ss_pred HHHH-HhhHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Q 017467 240 AIEA-QQHRLT--FQRLVAMVEGEKNYHLRIAAILGD 273 (371)
Q Consensus 240 ~ve~-qqqrlt--~~~L~~~veae~~yhq~~~~IL~~ 273 (371)
.+.. .-.|.+ +..-+++......||..+..+|.+
T Consensus 179 ~AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~ 215 (226)
T cd07645 179 EALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNS 215 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3222 234433 245566777777899888888765
No 111
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=94.51 E-value=0.011 Score=64.18 Aligned_cols=58 Identities=22% Similarity=0.483 Sum_probs=50.4
Q ss_pred cceEEEEecCCCCCCCCCccCCCCCEEEEEEeC-CCCeeEEE--eCCeeeEecCCceeecc
Q 017467 302 VYFLAEAIHPFTAASEKELSLGVGDYVVVRKVS-PSGWSEGE--CKGKAGWFPSANVEKRQ 359 (371)
Q Consensus 302 ~~~~arALydfea~~~~ELsf~~GDiI~Vl~~~-d~GWweGe--~~Gk~G~FPsnYVE~i~ 359 (371)
....|.++|.|++.+++++++.+|+++.+++.. .+||=+++ ++|..|+||.+|++.+.
T Consensus 577 ~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~ 637 (640)
T KOG3565|consen 577 PIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE 637 (640)
T ss_pred CccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence 345789999999999999999999999987654 67899998 68999999999998654
No 112
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=94.37 E-value=4.5 Score=37.90 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=79.0
Q ss_pred HhHHHhhhhccCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC--hhhh--hhhhhhhHHh
Q 017467 108 LSEDCCRYGAENNQ-NINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA--PLED--ARHLAQRYSR 182 (371)
Q Consensus 108 l~e~~~kYg~e~~~-~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~--~~e~--~R~L~~dy~r 182 (371)
|+.+..-||.-... +..++.||.++-.+|.++..++..-+.+... ..+|++||+.|..=. ++-. -|.+. .
T Consensus 47 l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~~~-~~~f~e~LkEy~~ya~slk~vlk~r~~~-q--- 121 (201)
T cd07622 47 VYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNGLED-EELIADQLKEYLFFADSLRAVCKKHELL-Q--- 121 (201)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHH-H---
Confidence 34444445543221 2234579999999998888888766666655 489999999886421 1111 12222 1
Q ss_pred hhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH-hhHHHHHHHHH
Q 017467 183 MRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEK 261 (371)
Q Consensus 183 ~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~-~~L~~~veae~ 261 (371)
.+.|.....+.++.. ..+...++.+........++..-+...+. +.+..+ .-|.++++.+.
T Consensus 122 --~~~e~~~~~L~~k~~---------------~l~~~ve~a~~~~e~f~~~~~~E~~rF~~-~K~~dlk~~l~~~A~~qi 183 (201)
T cd07622 122 --YDLEKAEDALANKKQ---------------QGEEAVKEAKDELNEFVKKALEDVERFKK-QKVRDLKEILISYAKLQI 183 (201)
T ss_pred --HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 112222222222211 13333344444433333334333333332 222223 45888999999
Q ss_pred HHHHHHHHHHHHhHH
Q 017467 262 NYHLRIAAILGDVEA 276 (371)
Q Consensus 262 ~yhq~~~~IL~~L~~ 276 (371)
.|.+.+.++-+.+..
T Consensus 184 ~~~~~~~~~W~~~~~ 198 (201)
T cd07622 184 KLAKKGLQTWTNIKE 198 (201)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999887776554
No 113
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=94.02 E-value=5 Score=37.75 Aligned_cols=57 Identities=16% Similarity=0.145 Sum_probs=37.2
Q ss_pred hHhHHHhhhhc----cCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 017467 107 KLSEDCCRYGA----ENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 165 (371)
Q Consensus 107 ~l~e~~~kYg~----e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~ 165 (371)
++|..+..+|. +.+ .+...|.+|+...|+++..|+++.++--..=-..|.|-|..+.
T Consensus 44 k~G~af~~L~~af~~d~~--~~~t~Ls~Al~~~g~~~e~Ig~l~~eQa~~D~~~l~E~L~eY~ 104 (199)
T cd07626 44 KIGQAFTSLGTAFELDET--PTSVPLTQAIKHTGQAYEEIGELFAEQPKHDLIPLLDGLHEYK 104 (199)
T ss_pred HHHHHHHHHHHHHccCCC--ccchHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Confidence 44554444443 333 2345799999999999999998877766655555555554443
No 114
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=93.76 E-value=7.7 Score=42.17 Aligned_cols=29 Identities=7% Similarity=0.145 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHhHHHHhh
Q 017467 252 RLVAMVEGEKNYH-------LRIAAILGDVEAEMVS 280 (371)
Q Consensus 252 ~L~~~veae~~yh-------q~~~~IL~~L~~~l~s 280 (371)
-|.+|+.....|+ +......++|+..++.
T Consensus 198 pllafl~slf~f~h~g~el~qDF~pfk~qlq~s~Qn 233 (812)
T KOG1451|consen 198 PLLAFLYSLFSFFHVGSELHQDFKPFKDQLQTSVQN 233 (812)
T ss_pred HHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHHHHHH
Confidence 4566666665544 3333345566665554
No 115
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=93.43 E-value=7.5 Score=37.17 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=78.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh--cChhh----hhhhhhhhHHhhhhHHHHHHHHHHHHH
Q 017467 125 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT--GAPLE----DARHLAQRYSRMRQEAETQAVEVSKRQ 198 (371)
Q Consensus 125 ~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~--~~~~e----~~R~L~~dy~r~Rq~~e~~~~ev~rRq 198 (371)
.+.|++|+..+|+..-.|.++......+---.|.|||+-++. ++.++ +.|-|. ..|.-...+++++
T Consensus 75 ~t~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~--------~~e~A~~~L~KaR 146 (218)
T cd07663 75 PTVIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALA--------DYENSNKALDKAR 146 (218)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 346999999999999999998888888888889999988875 12222 222222 2333334455554
Q ss_pred HhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhh-H-hhHHHHHHHHHHHHHHHHHHH
Q 017467 199 QRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAIL 271 (371)
Q Consensus 199 ~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt-~-~~L~~~veae~~yhq~~~~IL 271 (371)
.+. .++.+||.+..+....+..+.+-+...|...+. +|+. + ..|..+.|.+..--+.....|
T Consensus 147 ~k~---------kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~--~Rv~~Fk~~lve~~E~~ik~ak~~~~~~ 210 (218)
T cd07663 147 LKS---------KDVKQAEAHQQECCQKFEKLSESAKQELISFKR--RRVAAFRKNLIEMTELEIKHAKNNVSLL 210 (218)
T ss_pred hhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 442 244555555555555555555556666666554 4422 2 357777777764444444444
No 116
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=93.04 E-value=8.5 Score=36.67 Aligned_cols=166 Identities=16% Similarity=0.221 Sum_probs=107.7
Q ss_pred HHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 017467 86 DLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 165 (371)
Q Consensus 86 ~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~ 165 (371)
-+++=++.+...=|--+..=..|||.+.--|.--+ ...+..|...+|++.+.|++-=..|...++ -|+.-|++++
T Consensus 20 ~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~----~p~l~eeF~~~ae~hR~l~k~G~~ll~ai~-~~~s~l~T~l 94 (215)
T cd07659 20 GLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREP----QPAASEAFTKFGEAHRSIEKFGIELLKTLK-PMLSDLGTYL 94 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----ChhHHHHHHHhHHHHHHHHHhHHHHHHHhH-HHHHHHHHHH
Confidence 35666666666666666666678888888888644 235888999999999999999999999987 4778899999
Q ss_pred hcChhh---------hhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHH--------------HHHHHHHHH
Q 017467 166 TGAPLE---------DARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKL--------------HAAEARMQE 222 (371)
Q Consensus 166 ~~~~~e---------~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl--------------~~Ae~Kl~e 222 (371)
+++.-+ ++| +.|+.-|-.++....|- ..-+. .+ +-.-++ +.|.+||+-
T Consensus 95 ~KaipDT~lTikkY~~ar---~EY~ayc~kvkEmd~ee-~~~~~-~~----e~l~rvetgnyeyrl~lRcrq~~r~kf~k 165 (215)
T cd07659 95 NKAIPDTKLTIKKYADVK---FEYLSYCLKVKEMDDEE-YSYAA-LD----EPLYRVETGNYEYRLILRCRQEARARFAK 165 (215)
T ss_pred HhhCchHHHHHHHHHHHH---HHHHHHHHHHHHhcccc-ccccc-cc----CcHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 998632 233 34555555554432210 00000 00 101222 445556655
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHH
Q 017467 223 LKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG 272 (371)
Q Consensus 223 lk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~ 272 (371)
+++- ..-=|.-+|+.-=++-..||..|+.|.-.||..+.+++.
T Consensus 166 LR~D-------V~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~ 208 (215)
T cd07659 166 LRQD-------VLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLK 208 (215)
T ss_pred HHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5553 444455555533333457899999999999999988865
No 117
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=92.89 E-value=9.4 Score=36.79 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=57.4
Q ss_pred HHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 017467 68 QQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQE 147 (371)
Q Consensus 68 ~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~ 147 (371)
++|-+||.++-+=-.-.|++.-+...| |.++---|.- .....|++||..+|+....|....+
T Consensus 36 ~qLk~L~k~~~~lv~~r~eLa~~~~eF--------------a~s~~~L~~~----E~~~~Ls~als~laev~~~i~~~~~ 97 (234)
T cd07665 36 QRLRKLHAVVETLVNHRKELALNTALF--------------AKSLAMLGSS----EDNTALSRALSQLAEVEEKIEQLHQ 97 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHH
Confidence 567777776655555555555444433 3333333332 2235799999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHhhh
Q 017467 148 DFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 148 ~l~~~~~~~~~~PL~~~~~ 166 (371)
.-....--+|-+||..++-
T Consensus 98 ~qa~qd~~~f~e~l~eYiR 116 (234)
T cd07665 98 EQANNDFFLLAELLADYIR 116 (234)
T ss_pred HHHHHHHHHHhhhHHHHHH
Confidence 9999999999999988875
No 118
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.74 E-value=8.6 Score=36.01 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 017467 66 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE 145 (371)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~ 145 (371)
-|.+|-++|..+-.--.-+|++.-+ ...+|.++..-|+.-. +....|++++..+++..-.+.+.
T Consensus 16 l~~~lk~~~~~~~~lv~~rk~la~~--------------~~~fs~al~~L~~~E~--~~~~~l~~~l~~lse~~e~i~~~ 79 (198)
T cd07630 16 LSANMKEAAEKFLKIVNTEQRLANA--------------LGHLSSSLQLCVGLDE--ASVVALNRLCTKLSEALEEAKEN 79 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhcccc--cchHhHHHHHHHHHHHHHHHHHH
Confidence 3566666665554433334443332 2234444444444211 01117899999999999999998
Q ss_pred HHHHHHHHHhhhhhHHHHhhh--cChhhh-hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHH
Q 017467 146 QEDFNRLLSSQVLDPLRAMIT--GAPLED-ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQE 222 (371)
Q Consensus 146 ~~~l~~~~~~~~~~PL~~~~~--~~~~e~-~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~e 222 (371)
.+....+---.|-+||+-+.. ++.++- .||. +.-++++.-..+++|++.+.++ .+| .+.+.|+.+|++
T Consensus 80 ~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~-----~~~~~~~~a~k~l~Kar~~k~~--~ae--~~~~~a~~~fe~ 150 (198)
T cd07630 80 IEVVAGNNENTLGLTLDLYSRYSESEKDMLFRRT-----CKLIEFENASKALEKAKPQKKE--QAE--EAKKKAETEFEE 150 (198)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHhhHH--HHH--HHHHHHHHHHHH
Confidence 888888888899999988764 222221 1221 1122333334444443333211 122 344445555554
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhHhh-H-hhHHHHHHHHHHHHHHHHHHHHH
Q 017467 223 LKANMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAILGD 273 (371)
Q Consensus 223 lk~~m~~lgkea~~am~~ve~qqqrlt-~-~~L~~~veae~~yhq~~~~IL~~ 273 (371)
.-+. +...|...+. +|+. + ..|..+++.+..--..+.+++.+
T Consensus 151 iS~~-------~k~EL~rF~~--~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~ 194 (198)
T cd07630 151 ISSL-------AKKELERFHR--QRVLELQSALVCYAESQIKNAKEAAAVLTK 194 (198)
T ss_pred HHHH-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 5555555443 3422 2 35777888887766666665543
No 119
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=92.64 E-value=0.19 Score=36.38 Aligned_cols=36 Identities=33% Similarity=0.585 Sum_probs=29.3
Q ss_pred cCCCCCEEEEEEeCCCC-eeEE-EeCCeeeEecCCcee
Q 017467 321 SLGVGDYVVVRKVSPSG-WSEG-ECKGKAGWFPSANVE 356 (371)
Q Consensus 321 sf~~GDiI~Vl~~~d~G-WweG-e~~Gk~G~FPsnYVE 356 (371)
.+..|+.|.|+.....+ |+.. ..+|..||++..|++
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 46788999998776555 9999 579999999999985
No 120
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.28 E-value=11 Score=36.13 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=39.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh
Q 017467 126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL 170 (371)
Q Consensus 126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~ 170 (371)
++|..++-.+-.....|++....|...|...+..||+.+..+-.+
T Consensus 56 Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~~~k 100 (233)
T cd07649 56 GTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRENFKK 100 (233)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888888888889999999999999999999999999986443
No 121
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=91.38 E-value=13 Score=35.30 Aligned_cols=170 Identities=15% Similarity=0.187 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 017467 85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINEN-ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA 163 (371)
Q Consensus 85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~-~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~ 163 (371)
+.|.+++-|+..++.--.+++.++||--. +.+ +| .||.+|+++.++++++-..-+.....+--.+|-||-.
T Consensus 30 k~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~----~s~----~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~~LEk 101 (215)
T cd07644 30 NNYLRAFHALSEAAEVYFSAIAKIGEQAL----QSL----TSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQHMDK 101 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCC----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999998888888777766432 222 33 5999999999999888766666555555666666555
Q ss_pred hhhcChh--hhhhhhhhhHHhhhhHH-HHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHH
Q 017467 164 MITGAPL--EDARHLAQRYSRMRQEA-ETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAI-LGKEAAAALA 239 (371)
Q Consensus 164 ~~~~~~~--e~~R~L~~dy~r~Rq~~-e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~-lgkea~~am~ 239 (371)
=...|.+ .+.++=.+-=-|.|... |...+|..+ ..|.+. .|+- +.+ | =++-+...|.. +...-..||.
T Consensus 102 k~elD~kyi~~s~KkYq~E~r~k~dsleK~~selkk-~rrk~q-kn~~---e~k--E-~~~~lq~~~~~f~~~~~k~Al~ 173 (215)
T cd07644 102 NTKLDMQFIEDSRRVYELEYRHRAANLEKCMSELWR-MERQRD-RNVR---EMK--E-NVNRLRQSMQAFLKESQRAAEL 173 (215)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHhhc-CCch---hhH--H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 11222111111223333 556565532 112111 0221 111 1 11111111111 1111222322
Q ss_pred HHHHHhhHhh--HhhHHHHHHHHHHHHHHHHHHHHH
Q 017467 240 AIEAQQHRLT--FQRLVAMVEGEKNYHLRIAAILGD 273 (371)
Q Consensus 240 ~ve~qqqrlt--~~~L~~~veae~~yhq~~~~IL~~ 273 (371)
| .-.|.. +.+-+++...-..||..+..+|.+
T Consensus 174 --e-ErRRy~Flvek~c~~~k~~~~yh~ka~~ll~~ 206 (215)
T cd07644 174 --E-EKRRYRFLAEKHYLLNNTFLQFQSRARGMLQT 206 (215)
T ss_pred --H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 223433 356677777778999999888865
No 122
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=90.61 E-value=0.23 Score=54.68 Aligned_cols=46 Identities=28% Similarity=0.272 Sum_probs=38.3
Q ss_pred CCCCCCCCCccCCCCCEEEEEEeCCC-CeeEEE--eCCeeeEecCCcee
Q 017467 311 PFTAASEKELSLGVGDYVVVRKVSPS-GWSEGE--CKGKAGWFPSANVE 356 (371)
Q Consensus 311 dfea~~~~ELsf~~GDiI~Vl~~~d~-GWweGe--~~Gk~G~FPsnYVE 356 (371)
+|+...++.|-|..||.|+|++.... -||.|. ++++.|.||.+-|.
T Consensus 382 ~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 382 TYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred eccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 44457789999999999999986654 599996 58999999998877
No 123
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=89.72 E-value=20 Score=34.47 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=46.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC------hhhhhhhhhhhHHhhhhHHH
Q 017467 124 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA------PLEDARHLAQRYSRMRQEAE 188 (371)
Q Consensus 124 ~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~------~~e~~R~L~~dy~r~Rq~~e 188 (371)
.+|....+...+=.....++..+..+..++..++++||..|...- ..+++..|.+.+++.-.+++
T Consensus 59 ~~s~~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~ 129 (237)
T cd07657 59 QGSPISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVE 129 (237)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777788999999999999999999999988722 12345555555554444433
No 124
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=88.01 E-value=25 Score=33.58 Aligned_cols=42 Identities=14% Similarity=0.281 Sum_probs=39.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 017467 126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG 167 (371)
Q Consensus 126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~ 167 (371)
++|..|...+......++.....|...|...+..||+.++..
T Consensus 58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~ 99 (239)
T cd07658 58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDE 99 (239)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999998999999999999999999999999999999885
No 125
>KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms]
Probab=87.97 E-value=30 Score=34.32 Aligned_cols=207 Identities=16% Similarity=0.225 Sum_probs=139.7
Q ss_pred hhhHHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHH---HHHHHHHHhhcCcchhhhhhhHhHHHhh
Q 017467 38 SFQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRD---LVKVAEVFTAIGYKHIEAGTKLSEDCCR 114 (371)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~---~vr~~~~~~~~~~~q~E~~~~l~e~~~k 114 (371)
+-|-++.+||- ++-.|==|-|.|+-+- ++-+|. |++..++|-..=+--+|.-..|||.+--
T Consensus 108 tkQillEklGk-----~~rTVD~ElEaQie~L-----------rd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFad 171 (341)
T KOG3876|consen 108 TKQILLEKLGK-----GSRTVDLELEAQIEVL-----------RDTKRKYESVLALARAFSHHLTQMVETQHALGDSFAD 171 (341)
T ss_pred HHHHHHHHhcC-----CccccCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888973 2345545778776532 122232 6777777777766667777788887755
Q ss_pred hhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHH
Q 017467 115 YGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEV 194 (371)
Q Consensus 115 Yg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev 194 (371)
.....++ |-.-.-.-.++++.+.+--+.|+..|. -||--.++++++-+ ||--+-.+.|+.-|-|+.+-+.|+
T Consensus 172 Ls~K~~e------lq~eft~nseTqr~l~kngetLl~aln-fFIsSvnTl~nkTi-~DTL~Ti~qyEsARiEyDayR~Dl 243 (341)
T KOG3876|consen 172 LSQKSPE------LQEEFTYNSETQRLLGKNGETLLGALN-FFISSVNTLVNKTI-EDTLMTIKQYESARIEYDAYRTDL 243 (341)
T ss_pred HhccCHH------HHHHhCcCHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHhhhh-HHHHHHHHHhhhhhhhhhhhhhhH
Confidence 5443331 111111226888888888888888875 58889999999765 555666678888888888888887
Q ss_pred HHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH--hhHHHHHHHHHHHHHHHHHHHH
Q 017467 195 SKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF--QRLVAMVEGEKNYHLRIAAILG 272 (371)
Q Consensus 195 ~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~--~~L~~~veae~~yhq~~~~IL~ 272 (371)
+.---+-|+. .+- ..+..|.++|++-|+.+.-|-.+++--|.-+|+. ++.| .||.-|-.|.-.|+.=.+..|+
T Consensus 244 e~~~l~P~~~-~t~--~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeEN--rIkVmh~QL~llhnAiaAYfsGNak~LE 318 (341)
T KOG3876|consen 244 EELTLGPRDA-LTK--NLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEEN--RIKVMHKQLELLHNAIAAYFSGNAKQLE 318 (341)
T ss_pred HHhcCCcccc-ccc--cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 6543333322 222 4788899999999999999988888888877763 3333 5677777788888866655555
Q ss_pred H
Q 017467 273 D 273 (371)
Q Consensus 273 ~ 273 (371)
+
T Consensus 319 ~ 319 (341)
T KOG3876|consen 319 Q 319 (341)
T ss_pred H
Confidence 4
No 126
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.96 E-value=27 Score=33.87 Aligned_cols=128 Identities=14% Similarity=0.165 Sum_probs=84.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc--Chhh-----hhhhhhhhHHhhhhHHHHHHHHHHH
Q 017467 124 NENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG--APLE-----DARHLAQRYSRMRQEAETQAVEVSK 196 (371)
Q Consensus 124 ~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~--~~~e-----~~R~L~~dy~r~Rq~~e~~~~ev~r 196 (371)
-...++..|-.|+.++.+.+..=++|...+.++|+++|+.|+.= +++- |-.++ ||+.+- |.. ..
T Consensus 101 lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~--d~E~l~---E~l----~~ 171 (240)
T cd07667 101 LEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQA--EYEAKL---EAV----AL 171 (240)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHH----HH
Confidence 34569999999999999999999999999999999999998752 1221 22333 344321 111 12
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhH-hhHHHHHHHHHHHHHHHHHHHHH
Q 017467 197 RQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTF-QRLVAMVEGEKNYHLRIAAILGD 273 (371)
Q Consensus 197 Rq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~-~~L~~~veae~~yhq~~~~IL~~ 273 (371)
|+. +++.-+.+.+++...+...+.+...-+...+. +.+.-+ ..|..|.+.+..|++.+.++=+.
T Consensus 172 rre------------~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~-~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~ 236 (240)
T cd07667 172 RKE------------ERPKVPTDVEKCQDRVECFNADLKADMERWQN-NKRQDFRQLLMGMADKNIQYYEKCLTAWES 236 (240)
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 323 33344566777777776666666666665544 222223 46888999999999998776543
No 127
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=87.22 E-value=0.96 Score=33.39 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=28.6
Q ss_pred cCCCCCEEEEEEeCCCCeeEEEeC-CeeeEecCCce
Q 017467 321 SLGVGDYVVVRKVSPSGWSEGECK-GKAGWFPSANV 355 (371)
Q Consensus 321 sf~~GDiI~Vl~~~d~GWweGe~~-Gk~G~FPsnYV 355 (371)
.+..|+.+.++.....+|+..... |..||+|..++
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~ 61 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV 61 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence 467899999987755599999875 99999987765
No 128
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=85.98 E-value=1.2 Score=36.82 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=29.8
Q ss_pred CCCCccCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeec
Q 017467 316 SEKELSLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR 358 (371)
Q Consensus 316 ~~~ELsf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i 358 (371)
+...|.+++|+.+.|+...+.+-|-++. .|+.||+|.+++-..
T Consensus 29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~ 72 (89)
T PF14603_consen 29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL 72 (89)
T ss_dssp -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence 4568999999999999999999888885 899999999988544
No 129
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=85.82 E-value=32 Score=32.50 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=36.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
+++..|.-.+-.....++.....+..++.+++++||..++.
T Consensus 61 ~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~ 101 (251)
T cd07653 61 FSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLIS 101 (251)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888999999999999999999999999986
No 130
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.81 E-value=0.77 Score=43.34 Aligned_cols=38 Identities=21% Similarity=0.553 Sum_probs=31.7
Q ss_pred cCCCCCEEEEEEeCC-CCeeEEE-eCCeeeEecCCceeec
Q 017467 321 SLGVGDYVVVRKVSP-SGWSEGE-CKGKAGWFPSANVEKR 358 (371)
Q Consensus 321 sf~~GDiI~Vl~~~d-~GWweGe-~~Gk~G~FPsnYVE~i 358 (371)
++..|+.+.|+...+ .||+..+ .+|+.||+|..|+...
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~ 88 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT 88 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence 578899999998765 6899988 4899999999998754
No 131
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=85.51 E-value=33 Score=32.40 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=37.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhc
Q 017467 127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITG 167 (371)
Q Consensus 127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~ 167 (371)
+|..|+..+=.....|++....|...|.+++.+||..+...
T Consensus 57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~ 97 (236)
T cd07651 57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASS 97 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889888888889999999999999999999999998764
No 132
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.90 E-value=32 Score=31.74 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=37.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
..|+.++-.+|.++-...-.=+.|...+..+|.+||+.|+.
T Consensus 59 ~~L~~~le~~g~a~D~~~~~~~~l~~~l~~~f~EpL~E~~~ 99 (187)
T cd07629 59 SELAEALEKVGQAVDSTYLATEALVGSLYYNINEPLSESAQ 99 (187)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35899999999999999999999999999999999999876
No 133
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=82.88 E-value=48 Score=32.15 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=48.4
Q ss_pred hHhHHHhhhhccCCC-CCCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcC------hhhhhhhhh
Q 017467 107 KLSEDCCRYGAENNQ-NINE--NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGA------PLEDARHLA 177 (371)
Q Consensus 107 ~l~e~~~kYg~e~~~-~~~~--~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~------~~e~~R~L~ 177 (371)
+|..-+.||..--.. +..+ .++=.|...+-..+..++..++.+..+|..+|++||..++..- ...+|+++.
T Consensus 41 kL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~q 120 (253)
T cd07676 41 QLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQ 120 (253)
T ss_pred HHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677544210 0011 1233455554455578899999999999999999999888721 122355555
Q ss_pred hhHHhhhhHH
Q 017467 178 QRYSRMRQEA 187 (371)
Q Consensus 178 ~dy~r~Rq~~ 187 (371)
...++...++
T Consensus 121 k~~~~~~~~l 130 (253)
T cd07676 121 QHIETCWKQL 130 (253)
T ss_pred HHHHHHHHHH
Confidence 5444444433
No 134
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=82.60 E-value=2.4 Score=30.94 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=28.2
Q ss_pred ccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCce
Q 017467 320 LSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANV 355 (371)
Q Consensus 320 Lsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYV 355 (371)
..+..|..+.|. ....+|...+.+|..||++.+.+
T Consensus 19 ~~l~~g~~v~v~-~~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVI-ECRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEE-EccCCeEEEEECCeEEeEEeeec
Confidence 356777777777 55789999999999999998765
No 135
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=82.44 E-value=47 Score=31.72 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=34.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
++|..|...+=.....|+..+..|..+|. ++.+||..|..
T Consensus 61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~-~~~~eL~~l~~ 100 (234)
T cd07652 61 GSFSNAYHSSLEFHEKLADNGLRFAKALN-EMSDELSSLAK 100 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 46888888888888999999999999995 79999998876
No 136
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=81.19 E-value=53 Score=31.51 Aligned_cols=175 Identities=13% Similarity=0.130 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 017467 66 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKE 145 (371)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~ 145 (371)
-|++|.+++.++-..-.-=|++.-. ...+|.++..-|+. +...|++++..+++....|.++
T Consensus 35 ~~~~Lk~~~~~~e~l~~~rk~la~~--------------~~~~s~sl~~L~~~-----e~t~L~~~l~~laev~eki~~l 95 (218)
T cd07662 35 YHNRVKDSSAKSDRMTRSHKSAADD--------------YNRIGSSLYTLGTQ-----DSTDICKFFLKVSELFDKTRKI 95 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhccc-----cchhHHHHHHHHHHHHHHHHHH
Confidence 5788888887775544433433221 12344444444543 2347999999999998888876
Q ss_pred HHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHH
Q 017467 146 QEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKA 225 (371)
Q Consensus 146 ~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~ 225 (371)
......+=--.+.|-|+-+.. ...-++-|-++==|.=++.|.-...++|++.+-+| ..+...++++|+.+|++.-+
T Consensus 96 ~~~~A~~e~l~L~e~L~~Y~r--~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~ke--v~~aE~~~~~a~~~Fe~IS~ 171 (218)
T cd07662 96 EARVAADEDLKLSDLLKYYLR--ESQAAKDLLYRRSRSLVDYENANKALDKARAKNKD--VLQAETTQQLCCQKFEKISE 171 (218)
T ss_pred HHHHhhhhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHHHH
Confidence 665544433344555554432 01112222211111224445566666666666321 11112355555555555544
Q ss_pred HHHHhhHHHHHHHHHHHHHhhHhh-H-hhHHHHHHHHHHHHHHHHHHHH
Q 017467 226 NMAILGKEAAAALAAIEAQQHRLT-F-QRLVAMVEGEKNYHLRIAAILG 272 (371)
Q Consensus 226 ~m~~lgkea~~am~~ve~qqqrlt-~-~~L~~~veae~~yhq~~~~IL~ 272 (371)
. +...|...+. +|+. + ..|..++|.+..--+...+++.
T Consensus 172 ~-------aK~El~rF~~--~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~ 211 (218)
T cd07662 172 S-------AKQELIDFKT--RRVAAFRKNLVELAELELKHAKGNLQLLQ 211 (218)
T ss_pred H-------HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 6666665554 4432 2 3577777766644444444443
No 137
>KOG3812 consensus L-type voltage-dependent Ca2+ channel, beta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.58 E-value=1 Score=45.75 Aligned_cols=49 Identities=16% Similarity=0.414 Sum_probs=36.2
Q ss_pred eEEEEecCCCCCCC-------CCccCCCCCEEEEEEeCCCCeeEEEe---CCeeeEecC
Q 017467 304 FLAEAIHPFTAASE-------KELSLGVGDYVVVRKVSPSGWSEGEC---KGKAGWFPS 352 (371)
Q Consensus 304 ~~arALydfea~~~-------~ELsf~~GDiI~Vl~~~d~GWweGe~---~Gk~G~FPs 352 (371)
+-+++.-+|++.-+ -..+|...|++.|-++-+++||-|+. ++..||+|+
T Consensus 59 FAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 59 FAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred EEEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 33455555654433 35789999999999999999999994 455699996
No 138
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=78.46 E-value=0.97 Score=48.68 Aligned_cols=45 Identities=33% Similarity=0.529 Sum_probs=34.9
Q ss_pred CCccCCCCCEEEEEEe-CCCCeeEEEe--CCeeeEecCCceeeccCCC
Q 017467 318 KELSLGVGDYVVVRKV-SPSGWSEGEC--KGKAGWFPSANVEKRQRIP 362 (371)
Q Consensus 318 ~ELsf~~GDiI~Vl~~-~d~GWweGe~--~Gk~G~FPsnYVE~i~~lP 362 (371)
.-|.+.+||++.++.- ....||+|+. .+..||||++-|......|
T Consensus 625 P~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vp 672 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVP 672 (865)
T ss_pred CceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCC
Confidence 3578899999987653 3567999996 4567999999998766555
No 139
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=77.26 E-value=53 Score=29.29 Aligned_cols=89 Identities=8% Similarity=0.171 Sum_probs=61.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC
Q 017467 126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP 205 (371)
Q Consensus 126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~ 205 (371)
++|..|...+...+..++.....+...+...+.+|++.+.. ..++.......+..++.+.+...-.++.+ |
T Consensus 53 ~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~-~~~~~rk~~~~~~~~~~k~~~~~~~~~~k---k----- 123 (191)
T cd07610 53 TSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKE-DKEQARKKELAEGEKLKKKLQELWAKLAK---K----- 123 (191)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-----
Confidence 57999999999999999999999999999999999998877 32332344444555555554444444433 2
Q ss_pred CcccHHHHHHHHHHHHHHHHH
Q 017467 206 NPENVAKLHAAEARMQELKAN 226 (371)
Q Consensus 206 ~~d~~~kl~~Ae~Kl~elk~~ 226 (371)
++ .+...+..++...+..
T Consensus 124 -~~--~~y~~~~~~~~~~~~~ 141 (191)
T cd07610 124 -AD--EEYREQVEKLNPAQSE 141 (191)
T ss_pred -hH--HHHHHHHHHHHHHHHH
Confidence 12 3555566666665554
No 140
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.71 E-value=1.1e+02 Score=29.88 Aligned_cols=40 Identities=5% Similarity=0.162 Sum_probs=33.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
.+|..+.-.+-.....|++....|...|. +.++||..+..
T Consensus 63 Gt~~~~~~~~~~e~e~~a~~H~~la~~L~-~~~~~l~~~~~ 102 (269)
T cd07673 63 GTFAPVWDVFKTSTEKLANCHLELVRKLQ-ELIKEVQKYGE 102 (269)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 35988888886666999999999999998 58899999885
No 141
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.31 E-value=4.1 Score=42.39 Aligned_cols=53 Identities=34% Similarity=0.409 Sum_probs=40.9
Q ss_pred EEEEecCCCCCCCCCccCCCCCEEEEEEeCCCCeeEEE--eCCeeeEecCCceee
Q 017467 305 LAEAIHPFTAASEKELSLGVGDYVVVRKVSPSGWSEGE--CKGKAGWFPSANVEK 357 (371)
Q Consensus 305 ~arALydfea~~~~ELsf~~GDiI~Vl~~~d~GWweGe--~~Gk~G~FPsnYVE~ 357 (371)
-..++++..|.+..|+.+++||+|-|-...=+|...|. ..++.|.||+--|++
T Consensus 511 n~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 511 NVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred ceEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 46889999999999999999999987644334444554 357889999976654
No 142
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=68.49 E-value=1.4e+02 Score=30.35 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=92.2
Q ss_pred HHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChh-
Q 017467 92 EVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPL- 170 (371)
Q Consensus 92 ~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~- 170 (371)
.-+.-.-|+..+.-..+|++.|--|.--+ ...-+.|..-||+.++.+++---.+..-++ -++--|+++.+++.-
T Consensus 156 ~~ml~a~y~lsqt~k~FGd~F~~i~vhEp----Qq~AsEAF~~Fgd~HR~ieK~g~~~~k~ik-pmlsDL~tYlnkaiPD 230 (429)
T KOG3651|consen 156 GDMLQAQYKLSQTQKEFGDIFCDIAVHEP----QQTASEAFSSFGDKHRMIEKKGSESAKPIK-PMLSDLQTYLNKAIPD 230 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccCc----chhHHHHHHHHHHHHHHHHHhccchhhhhh-HHHHHHHHHHhccCCc
Confidence 33344445666666678888888887766 234677888999998888876555555554 355568888888753
Q ss_pred ---hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccC------------------C-CcccHH---HHHHHHHHHHHHHH
Q 017467 171 ---EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREA------------------P-NPENVA---KLHAAEARMQELKA 225 (371)
Q Consensus 171 ---e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~------------------~-~~d~~~---kl~~Ae~Kl~elk~ 225 (371)
-+-|-||-.|.=|-= =-|++|- . |-|--. =-+.|.+||.-++.
T Consensus 231 TrLTikkYlDvKfeYLSY------------CLKvKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQeaRarF~kmR~ 298 (429)
T KOG3651|consen 231 TRLTIKKYLDVKFEYLSY------------CLKVKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQEARARFMKMRD 298 (429)
T ss_pred chhhhHHhhhhhHHHHHH------------HHhhhhccchhhceeeecCceeEeecCCeeeehhHHHHHHHHHHHHHHHH
Confidence 334555544432110 0122221 0 111000 00335555554443
Q ss_pred HHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHh
Q 017467 226 NMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDV 274 (371)
Q Consensus 226 ~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L 274 (371)
- .-.-|.-+++..-+--.++|..++...-.||+.+++||..+
T Consensus 299 D-------VleKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~~ 340 (429)
T KOG3651|consen 299 D-------VLEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKER 340 (429)
T ss_pred H-------HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 33335544442222225679999999999999999999863
No 143
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.24 E-value=1.2e+02 Score=29.08 Aligned_cols=147 Identities=19% Similarity=0.157 Sum_probs=77.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhh----hhHHHHHHHHHHHHHHhh
Q 017467 126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRM----RQEAETQAVEVSKRQQRV 201 (371)
Q Consensus 126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~----Rq~~e~~~~ev~rRq~K~ 201 (371)
..+.+++-.+|.-.....+.-.+=...+.+.|++||+.+.+ .+---|-|-.||+|+ -+.++.....-++|..+.
T Consensus 87 ~~l~~~l~~~s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d--~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l 164 (246)
T cd07597 87 GDINEGLSSLSKHFQLLSDLSEDEARAEEDGVLEKLKLQLD--LLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESL 164 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 44666777777766777777777778888999999998875 333334444444421 011122222223333333
Q ss_pred ccC--CCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467 202 REA--PNPENVAKLHAAEARMQELKANMAILGKEAAAALA----AIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVE 275 (371)
Q Consensus 202 re~--~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~----~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~ 275 (371)
+-. ..+.++++|.++-.+=.+....+..=+-.+...|. -+..-++ +....|..++..+..||.....+=..|.
T Consensus 165 ~~~~~~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W~~L~ 243 (246)
T cd07597 165 RAKPDVKGAEVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVWERLV 243 (246)
T ss_pred hcCCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 221 13444666664443333332221111111122222 1222112 4456788899999999988877766554
No 144
>KOG4384 consensus Uncharacterized SAM domain protein [General function prediction only]
Probab=64.00 E-value=6 Score=40.26 Aligned_cols=55 Identities=24% Similarity=0.236 Sum_probs=47.1
Q ss_pred EEEEecCCCC--CCCCCccCCCCCEEEEEEeCCCCeeEEEeCCeeeEecCCceeecc
Q 017467 305 LAEAIHPFTA--ASEKELSLGVGDYVVVRKVSPSGWSEGECKGKAGWFPSANVEKRQ 359 (371)
Q Consensus 305 ~arALydfea--~~~~ELsf~~GDiI~Vl~~~d~GWweGe~~Gk~G~FPsnYVE~i~ 359 (371)
.+++.-+|.+ ...++|-++.||+|.++.....|-|.|-++++.|-|+.-||.++.
T Consensus 138 ~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~s 194 (361)
T KOG4384|consen 138 RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVIS 194 (361)
T ss_pred cccccccCCCCcccccchhhcccchhhccccCccccccccccCcccccccceecccc
Confidence 4566666764 567899999999999999999999999999999999999998763
No 145
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.30 E-value=95 Score=31.04 Aligned_cols=57 Identities=32% Similarity=0.441 Sum_probs=32.4
Q ss_pred hhhhhHHHHhhhcChhhh-hhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhH-
Q 017467 155 SQVLDPLRAMITGAPLED-ARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGK- 232 (371)
Q Consensus 155 ~~~~~PL~~~~~~~~~e~-~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgk- 232 (371)
.|+|-||+. ||+ .|||.-+.| |+ ..+|+--+...+|||+.+..+-.
T Consensus 57 EQYLTPLQQ------KEV~iRHLkakLk---------------------es-----~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 57 EQYLTPLQQ------KEVCIRHLKAKLK---------------------ES-----ENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHhcChHHH------HHHHHHHHHHHHH---------------------HH-----HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 477888764 565 788874333 21 24555555666666666555543
Q ss_pred HHHHHHHHHHH
Q 017467 233 EAAAALAAIEA 243 (371)
Q Consensus 233 ea~~am~~ve~ 243 (371)
|.+..=..||+
T Consensus 105 WIEEECHRVEA 115 (305)
T PF15290_consen 105 WIEEECHRVEA 115 (305)
T ss_pred HHHHHHHHHHH
Confidence 55554444444
No 146
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=61.77 E-value=11 Score=39.92 Aligned_cols=38 Identities=24% Similarity=0.478 Sum_probs=32.7
Q ss_pred cCCCCCEEEEEEeCCCCeeEEEe-CCeeeEecCCceeec
Q 017467 321 SLGVGDYVVVRKVSPSGWSEGEC-KGKAGWFPSANVEKR 358 (371)
Q Consensus 321 sf~~GDiI~Vl~~~d~GWweGe~-~Gk~G~FPsnYVE~i 358 (371)
++..|+.|.|+...+.||+.... +|+.||+-..|+..-
T Consensus 104 sl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~~ 142 (481)
T PRK13914 104 SIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTDK 142 (481)
T ss_pred eecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccCC
Confidence 68899999997655779999998 599999999998864
No 147
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=60.51 E-value=1.7e+02 Score=28.35 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=34.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 125 ENILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 125 ~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
.|...++...+-+-...++..+..+..++..++++.|..|+.
T Consensus 60 ~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~ 101 (234)
T cd07686 60 VSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIK 101 (234)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355556777777777889999999999999999999988865
No 148
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=59.55 E-value=1.7e+02 Score=28.19 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Q 017467 127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMI 165 (371)
Q Consensus 127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~ 165 (371)
+|..|...+-.....++.....|...|..++.+||..+.
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~ 99 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQ 99 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888777799999999999999999999999887
No 149
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=58.76 E-value=1.9e+02 Score=28.34 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=38.3
Q ss_pred hHhHHHhhhhccCCCCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 107 KLSEDCCRYGAENNQNINE---NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 107 ~l~e~~~kYg~e~~~~~~~---~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
+|..-|.+|+.--. ..++ .+...+...+=.....++-.++.+..++..+|+.||..+..
T Consensus 41 kL~~L~Kky~~KK~-~~~e~p~~t~~~s~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~ 102 (252)
T cd07675 41 QLRNLVKKYCPKRS-SKDEEPRFTSCLSFYNILNELNDYAGQREVVAEEMGHRVYGELMRYSH 102 (252)
T ss_pred HHHHHHHHhccccC-CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 55555667754332 1111 11223333444556777889999999999999999999985
No 150
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=56.81 E-value=12 Score=30.04 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=19.2
Q ss_pred CccCCCCCEEEEEEe------CCCCeeEEEe
Q 017467 319 ELSLGVGDYVVVRKV------SPSGWSEGEC 343 (371)
Q Consensus 319 ELsf~~GDiI~Vl~~------~d~GWweGe~ 343 (371)
-|+++.||.+.|-.. .+.+||.|..
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 478999999987543 3568999973
No 151
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=54.59 E-value=1.6e+02 Score=26.25 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 017467 212 KLHAAEARMQELKAN 226 (371)
Q Consensus 212 kl~~Ae~Kl~elk~~ 226 (371)
+++.|+.+|+.+...
T Consensus 169 ~l~~a~~~f~~~~~~ 183 (229)
T PF03114_consen 169 KLEEAKEEFEALNEE 183 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666555443
No 152
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=54.56 E-value=2.2e+02 Score=27.92 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=31.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 017467 127 ILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRA 163 (371)
Q Consensus 127 ~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~ 163 (371)
+|..|.-.+-.....|++....|...|...+++|+++
T Consensus 61 TL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~ 97 (258)
T cd07681 61 TLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRA 97 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777776677999999999999999999999977
No 153
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.17 E-value=2e+02 Score=27.34 Aligned_cols=94 Identities=21% Similarity=0.250 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-
Q 017467 130 KAAAIYGDARKHVEKEQEDFNRLLS---SQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP- 205 (371)
Q Consensus 130 ~A~~~~g~a~~~~~~~~~~l~~~~~---~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~- 205 (371)
.|+-.||+..+.|. ..+...++ .-+++||+.++..++.. |+-.|..+|.-...++.=+.|=-.-+
T Consensus 63 ~al~~f~~~l~e~~---~~ll~~~~~~~~~~~~pL~~f~k~~i~~--------~Ke~rk~Fd~~q~kyD~~L~r~~~~sk 131 (214)
T cd07609 63 LALKRFGDGLKDFW---GGVLSALKGNDSLILDPLRSFVKSDIRP--------YKELRKNFEYYQRKYDSMLARYVAQSK 131 (214)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHhcchHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 58889999988777 44555554 77999999999977641 22222222222222322222200000
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 017467 206 NPENVAKLHAAEARMQELKANMAILGKEAAAALAAI 241 (371)
Q Consensus 206 ~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~v 241 (371)
+-+ -..++.|...|.+.+..+ .++||.=|
T Consensus 132 ~K~-p~~l~Eda~qL~e~Rk~Y------~~aSLDyv 160 (214)
T cd07609 132 TKE-PSSLREDAFQLFEARKAY------LKASLDLV 160 (214)
T ss_pred CCC-hhhhhhHHHHHHHHHHHH------HHHHHHHH
Confidence 001 247777888888888875 55555544
No 154
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=52.95 E-value=19 Score=34.21 Aligned_cols=38 Identities=26% Similarity=0.483 Sum_probs=30.9
Q ss_pred cCCCCCEEEEEEeCCC-CeeEEEe-CCeeeEecCCceeec
Q 017467 321 SLGVGDYVVVRKVSPS-GWSEGEC-KGKAGWFPSANVEKR 358 (371)
Q Consensus 321 sf~~GDiI~Vl~~~d~-GWweGe~-~Gk~G~FPsnYVE~i 358 (371)
+++.|+.+.|+..... ||..... +|+.||||..++..-
T Consensus 49 ~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~e 88 (205)
T COG3103 49 SIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTSE 88 (205)
T ss_pred EecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhccc
Confidence 6789999999876544 8999986 789999999887653
No 155
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=52.55 E-value=20 Score=26.50 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.0
Q ss_pred cCCCCCEEEEEEeCCCCeeEEEe
Q 017467 321 SLGVGDYVVVRKVSPSGWSEGEC 343 (371)
Q Consensus 321 sf~~GDiI~Vl~~~d~GWweGe~ 343 (371)
.|++|+.|.+....+.+||.|..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 57899999998877889999985
No 156
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.99 E-value=2.6e+02 Score=26.74 Aligned_cols=40 Identities=3% Similarity=0.042 Sum_probs=31.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhh
Q 017467 126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMIT 166 (371)
Q Consensus 126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~ 166 (371)
++|..+...+-.....|+.....|...|. .+++||..+..
T Consensus 56 gt~~~~w~~i~~~~e~~a~~H~~l~~~L~-~~~~~l~~~~~ 95 (261)
T cd07648 56 GTFAPLWLVLRVSTEKLSELHLQLVQKLQ-ELIKDVQKYGE 95 (261)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 35888777777777889999999988884 68888887764
No 157
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=46.53 E-value=2.7e+02 Score=26.55 Aligned_cols=152 Identities=13% Similarity=0.222 Sum_probs=79.7
Q ss_pred cHHHHH-HHHHHHHHHhh-------hhchhhhhHHHHHHHHHHh--hcCcchhhhhhhHhHHHhhhhccCCCCCCC---C
Q 017467 60 DEVEMQ-RHQQLEKLYRS-------TRGTKDFQRDLVKVAEVFT--AIGYKHIEAGTKLSEDCCRYGAENNQNINE---N 126 (371)
Q Consensus 60 ~~~~~~-~~~~~~~~~~~-------~~~~~~~q~~~vr~~~~~~--~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~---~ 126 (371)
-|+||. .|+.|++|+.= +|+.-.-||-.+-|++.|. .+|-++++-...++++..+++.=+.. -++ .
T Consensus 7 ~e~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~e-l~~~~~~ 85 (207)
T cd07634 7 HEIELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIA-VEEERRR 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 378887 78889988764 4455555666777777655 45666444433678888877765440 000 0
Q ss_pred chhHH---------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHH
Q 017467 127 ILPKA---------------AAIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQA 191 (371)
Q Consensus 127 ~l~~A---------------~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~ 191 (371)
.+..| +-.+-++.+.-+++++.++..+.-+.--| .+..-.++...+...++.|..++..+
T Consensus 86 L~~~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~aleK~l~l~-----~~kk~~~~~ea~~~l~~~R~~F~~~~ 160 (207)
T cd07634 86 LIQNANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSILEKHLNLS-----AKKKESHLQRADTQIDREHQNFYEAS 160 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHHHHHHhcc-----ccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 00111 11123344444555555544333322222 11111234555666667777777777
Q ss_pred HHHHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHh
Q 017467 192 VEVSKRQQRVREAPNPENVAKLHAAEARMQELKANMAIL 230 (371)
Q Consensus 192 ~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~l 230 (371)
.|+--+. ..++ +.-||+-+...+.-+
T Consensus 161 ldYv~~i------------~~vq-~kKkfefle~ll~~~ 186 (207)
T cd07634 161 LEYVFKI------------QEVQ-EKKKFEFVEPLLAFL 186 (207)
T ss_pred HHHHHHH------------HHHH-HHHHHHHHHHHHHHH
Confidence 7764332 2333 666676666654333
No 158
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=40.11 E-value=3.7e+02 Score=26.32 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=32.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 017467 126 NILPKAAAIYGDARKHVEKEQEDFNRLLSSQVLDPLR 162 (371)
Q Consensus 126 ~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~ 162 (371)
++|-.|...+-.....|++....|...|...+++|++
T Consensus 60 Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r 96 (258)
T cd07680 60 GSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVK 96 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3577787777777799999999999999999999996
No 159
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=37.95 E-value=55 Score=24.68 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=21.7
Q ss_pred cCCCCCEEEEEEeC-CCCeeEEEeCCeeeEecC
Q 017467 321 SLGVGDYVVVRKVS-PSGWSEGECKGKAGWFPS 352 (371)
Q Consensus 321 sf~~GDiI~Vl~~~-d~GWweGe~~Gk~G~FPs 352 (371)
.+..|.-|.|++.. |..|...+...-.||+|+
T Consensus 22 ~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 22 ALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred ccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 46788889998766 456999998888999974
No 160
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=37.11 E-value=3.5e+02 Score=25.25 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017467 87 LVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLS 154 (371)
Q Consensus 87 ~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~ 154 (371)
+|.-...|+++-.--...+..+.|++.|-|.--. ++ -| .-++|.++.+|.+....+...+.
T Consensus 15 lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~----~s-~~--s~~lG~~L~~~s~~~r~i~~~~~ 75 (219)
T PF08397_consen 15 LVSLGKKYQKALRAMSQAAAAFFDALQKIGDMAS----NS-RG--SKELGDALMQISEVHRRIENELE 75 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TS-SS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CC-Cc--cccHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444555566666554422 22 34 56899999999977766664443
No 161
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.67 E-value=4e+02 Score=29.03 Aligned_cols=68 Identities=21% Similarity=0.314 Sum_probs=42.1
Q ss_pred HHhhhcChh---hhhhhhhhhHHhhhhHHHHHHHH---------HHHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHH
Q 017467 162 RAMITGAPL---EDARHLAQRYSRMRQEAETQAVE---------VSKRQQRVREAPNPENVAKLHAAEARMQELKANMAI 229 (371)
Q Consensus 162 ~~~~~~~~~---e~~R~L~~dy~r~Rq~~e~~~~e---------v~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~ 229 (371)
+.++++..+ +.+.++-.+|+.+++...+...+ +.+|..++++.. -.+..+|+++.+.|+++++.+..
T Consensus 152 ~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~-ik~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 152 RALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKD-IKNPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 34777777787777776544433 456666665432 11135888999999988887654
Q ss_pred h
Q 017467 230 L 230 (371)
Q Consensus 230 l 230 (371)
.
T Consensus 231 ~ 231 (555)
T TIGR03545 231 D 231 (555)
T ss_pred H
Confidence 3
No 162
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=35.36 E-value=7.1e+02 Score=28.27 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhhcChh----hhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCC-----CcccHH
Q 017467 141 HVEKEQEDFNRLLSSQVLDPLRAMITGAPL----EDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAP-----NPENVA 211 (371)
Q Consensus 141 ~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~----e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~-----~~d~~~ 211 (371)
-.-++||+|-+..| ++-+-|.+-+.+|.+ |..|.|--.=++|-.+--++.+=+.+=++|.|++. +.+.+.
T Consensus 420 a~~kERDalr~e~k-slk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~ 498 (961)
T KOG4673|consen 420 ALTKERDALRREQK-SLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELIT 498 (961)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHH
Confidence 34567888887766 345666666666654 34666666666666666666666666677777642 111122
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Q 017467 212 KLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILGDVEAEMVSE 281 (371)
Q Consensus 212 kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~~L~~~l~se 281 (371)
+|+.-++||...+. +.. .+|- +++=++.++.+++..+.+|..++...++.|+....+.
T Consensus 499 ~L~sE~~~lk~il~--------~Ke---e~Ek-~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~ 556 (961)
T KOG4673|consen 499 KLQSEENKLKSILR--------DKE---ETEK-LLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAE 556 (961)
T ss_pred HHHHHHHHHHHHhh--------hHH---HHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 22222222222222 111 2332 2333578899999999999988877888887776553
No 163
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=33.80 E-value=5.4e+02 Score=26.42 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccC
Q 017467 66 RHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAEN 119 (371)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~ 119 (371)
.|-+||||-+||---++.--++=-+-.-|-. .|+|.-.+|-+--.|||...
T Consensus 15 I~~eLEkLN~sTDdIN~~E~~Le~ar~~Fre---tqv~~t~kl~el~Kk~~k~I 65 (426)
T KOG2008|consen 15 IQGELEKLNQSTDDINRRETELEDARQKFRE---TQVEATVKLDELVKKIGKAI 65 (426)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 6889999999998766653221111112222 24444445555555555543
No 164
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=32.07 E-value=46 Score=32.72 Aligned_cols=34 Identities=35% Similarity=0.482 Sum_probs=25.9
Q ss_pred HHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhH
Q 017467 41 AVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQR 85 (371)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 85 (371)
-|.|.||.|+ .-+-||.| ...|++||-| -+|||+
T Consensus 239 EvAK~fg~g~-----c~Fyde~E---~~~l~~lYG~---m~~lqt 272 (276)
T PF06675_consen 239 EVAKEFGRGK-----CSFYDEEE---FARLQKLYGS---MSHLQT 272 (276)
T ss_pred HHHHHHcCCC-----ceeeCHHH---HHHHHHHhcc---HHHHHh
Confidence 5899999655 45779999 5679999976 357774
No 165
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=30.01 E-value=62 Score=34.02 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=58.5
Q ss_pred hhhhhhhhhhhccchhhhHHHhhhccCCCCCCccceecHHHHHHHHHHHHHHhhhhchhhhhHH--HHHHHHHHhhcCcc
Q 017467 23 IAIKIDDILNEFNTFSFQAVIKQFSASGYERSDVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRD--LVKVAEVFTAIGYK 100 (371)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~--~vr~~~~~~~~~~~ 100 (371)
|.+.|-|= .|-.-++++||+.+ | -||+|. +|+++-----||--||-| |=||+|-+|.+=+|
T Consensus 110 IqleI~Dp--~Id~~al~~a~gsL----Y-------~dEveI----~l~dv~gvlAaA~~lqldgl~qrC~evMie~lsp 172 (488)
T KOG4682|consen 110 IQLEIPDP--NIDVVALQVAFGSL----Y-------RDEVEI----KLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSP 172 (488)
T ss_pred EEEEcCCC--cccHHHHHHHHhhh----h-------hhheec----cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCh
Confidence 33444443 23445777887655 5 266664 577887777778889999 88999999999998
Q ss_pred hhhhhhhHhHHHhhhhccCC
Q 017467 101 HIEAGTKLSEDCCRYGAENN 120 (371)
Q Consensus 101 q~E~~~~l~e~~~kYg~e~~ 120 (371)
-+=+ ..=|..||||-|--
T Consensus 173 kta~--~yYea~ckYgle~v 190 (488)
T KOG4682|consen 173 KTAC--GYYEAACKYGLESV 190 (488)
T ss_pred hhhh--HhhhhhhhhhhHHH
Confidence 7777 79999999999854
No 166
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=29.32 E-value=5.1e+02 Score=24.75 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 017467 251 QRLVAMVEGEKNYHLRIAAILGDV 274 (371)
Q Consensus 251 ~~L~~~veae~~yhq~~~~IL~~L 274 (371)
+.+..+++.|..||+++++-|++.
T Consensus 180 ~~M~~yL~eQi~Fyq~v~~kle~a 203 (207)
T cd07669 180 QMMQHYLRQQIIFYQRVSQQLEKT 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457779999999999998877653
No 167
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.68 E-value=1.7e+02 Score=28.39 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHH
Q 017467 2 ESLRRQASKLKEQVAKQ 18 (371)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (371)
|+|||||-++--|..-+
T Consensus 8 e~LRkqArslE~~ld~k 24 (231)
T KOG3208|consen 8 EALRKQARSLENQLDSK 24 (231)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 79999999998776544
No 168
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=27.49 E-value=5.4e+02 Score=24.45 Aligned_cols=124 Identities=19% Similarity=0.251 Sum_probs=78.4
Q ss_pred CchhHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhh-hhhhhhHHhhhhHHHHHHHHH
Q 017467 126 NILPKAAAI----------YGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDA-RHLAQRYSRMRQEAETQAVEV 194 (371)
Q Consensus 126 ~~l~~A~~~----------~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~-R~L~~dy~r~Rq~~e~~~~ev 194 (371)
..||++++. ||.|+..+++....+.. +...|..++..=.. +|++.. .-+. +|.+.|..+|..++++
T Consensus 54 ~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a~~kia~-~q~~f~~~~~~~~l-~pL~~~l~~~k-~i~k~RKkLe~rRLdy 130 (215)
T cd07593 54 EALGLVMINHGEEFPQDSEYGSCLSKLGRAHCKIGT-LQEEFADRLSDTFL-ANIERSLAEMK-EYHSARKKLESRRLAY 130 (215)
T ss_pred HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 468888765 67788889998888877 68999999876555 333321 1343 8899999999999999
Q ss_pred HHHHHhhccCCCcccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHHHHHHHHHHH
Q 017467 195 SKRQQRVREAPNPENVAKLHAAEARMQELKANMAILGKEAAAALAAIEAQQHRLTFQRLVAMVEGEKNYHLRIAAILG 272 (371)
Q Consensus 195 ~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk~~m~~lgkea~~am~~ve~qqqrlt~~~L~~~veae~~yhq~~~~IL~ 272 (371)
+..+.|.+.+ +.+ + ..+++ |...|...++.+.+ .+...+..+.+.+-++-+....+++
T Consensus 131 D~~ksk~~ka-k~~---~-~~~ee--------------Elr~Ae~kfees~E-~a~~~M~~i~~~e~e~~~~L~~lv~ 188 (215)
T cd07593 131 DAALTKSQKA-KKE---D-SRLEE--------------ELRRAKAKYEESSE-DVEARMVAIKESEADQYRDLTDLLD 188 (215)
T ss_pred HHHHHHHHhc-ccc---c-hhHHH--------------HHHHHHHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9998887543 222 0 11222 23333434443222 2345566666666666655555544
No 169
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=25.06 E-value=9.7e+02 Score=26.58 Aligned_cols=107 Identities=13% Similarity=0.093 Sum_probs=56.0
Q ss_pred ccceecHHHHHHHHHHHHHHhhhhchhhhhHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHH
Q 017467 55 DVMVIDEVEMQRHQQLEKLYRSTRGTKDFQRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAI 134 (371)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~ 134 (371)
..+.++......-+-|.+-|...-+..-+ ..+-+.+++-+..| +|. .++.|+.++-.
T Consensus 55 ~Gv~v~~i~R~~d~fl~~q~r~~~s~~~~-----------~~~~~~~l~~i~~l------l~~------~~~gls~~l~~ 111 (649)
T PRK12715 55 AGVSVSSIYRNVDQFANAQVRSTLSYRTQ-----------YDAFYNQAIQIDKL------LSQ------DGSSISVPLQT 111 (649)
T ss_pred cCeEEEEEEEhHhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH------hCC------CCCcHHHHHHH
Confidence 45667777777888888888765433222 22222222221112 232 23347666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHH
Q 017467 135 YGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQ 198 (371)
Q Consensus 135 ~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq 198 (371)
|=.|++.++. +==-.|.|. ..++.|.-|..++..+...++.+..++....
T Consensus 112 ff~a~q~la~----------~P~~~~~Rq----~vl~~A~~L~~~fn~~~~~L~~~~~~~n~~I 161 (649)
T PRK12715 112 FFDSIGQLNS----------TPDNIATRG----VVLKQSQLLAQQFNSLQTKLEEYERNSTLQV 161 (649)
T ss_pred HHHHHHHHHH----------CCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544442 111112222 2245677777788887777777776664443
No 170
>smart00307 ILWEQ I/LWEQ domain. Thought to possess an F-actin binding function.
Probab=22.98 E-value=6.5e+02 Score=23.83 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=13.1
Q ss_pred hhchhhhhHHHHHHHHH
Q 017467 77 TRGTKDFQRDLVKVAEV 93 (371)
Q Consensus 77 ~~~~~~~q~~~vr~~~~ 93 (371)
-++|+..||+||..-+|
T Consensus 25 v~aA~~~Q~Eiv~~gr~ 41 (200)
T smart00307 25 VKAATNAQREIVAQGRG 41 (200)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 46889999999986443
No 171
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=22.92 E-value=68 Score=33.10 Aligned_cols=45 Identities=31% Similarity=0.575 Sum_probs=32.3
Q ss_pred CCCCCccCCCCCEEEEEEeCCCCeeEEEe-------CC----eeeEecCCc-eeeccC
Q 017467 315 ASEKELSLGVGDYVVVRKVSPSGWSEGEC-------KG----KAGWFPSAN-VEKRQR 360 (371)
Q Consensus 315 ~~~~ELsf~~GDiI~Vl~~~d~GWweGe~-------~G----k~G~FPsnY-VE~i~~ 360 (371)
..+.-+++++||.|.++. .-.+|..|+. .| -+||||.++ ++..+.
T Consensus 329 ~ddprisL~p~d~i~~tr-~~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~~e~ 385 (414)
T KOG1314|consen 329 TDDPRISLPPGDGIKATR-GFNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEKCEK 385 (414)
T ss_pred CCCcccccCCCcceeeee-eeecccchhhhhhHHHhhcchhhhccccccccccccccc
Confidence 445678999999998774 3578999942 12 369999998 665543
No 172
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=22.42 E-value=1.2e+03 Score=26.64 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=21.7
Q ss_pred hhhHHhhhhHHHHHHHHHHHHHHhhc
Q 017467 177 AQRYSRMRQEAETQAVEVSKRQQRVR 202 (371)
Q Consensus 177 ~~dy~r~Rq~~e~~~~ev~rRq~K~r 202 (371)
...|++.|-++|.+..++.++..+.+
T Consensus 80 s~e~e~~~~~le~~l~e~~~~l~~~~ 105 (769)
T PF05911_consen 80 SKEWEKIKSELEAKLAELSKRLAESA 105 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999998887754
No 173
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=22.28 E-value=6.5e+02 Score=23.57 Aligned_cols=118 Identities=15% Similarity=0.171 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHH-------------------HHHHHHHHHHHHH
Q 017467 84 QRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKA-------------------AAIYGDARKHVEK 144 (371)
Q Consensus 84 q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A-------------------~~~~g~a~~~~~~ 144 (371)
+|..+-|+.-|...+..-. .++++|.+||.-+.+ .. +..... +-.+-++++..++
T Consensus 39 ~~~F~~~l~d~~~~~~gd~----~i~~~L~kF~~~l~e-i~-~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk 112 (200)
T cd07637 39 NKLFVSGIRDLSQQCKKDE----MISECLDKFGDSLQE-MV-NYHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDK 112 (200)
T ss_pred HHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8889999998877654322 578888999887661 00 001111 1234578888888
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHHHHH
Q 017467 145 EQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSKRQQRVREAPNPENVAKLHAAEARMQELK 224 (371)
Q Consensus 145 ~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~rRq~K~re~~~~d~~~kl~~Ae~Kl~elk 224 (371)
+++.++..+.-+---| .+.|- ..+..+......|+.+...+.|+-... ..++ +.-||+-+.
T Consensus 113 ~se~yd~al~k~~~~k-----~kk~~-~l~Ea~~~L~~~Rk~f~~asLdyv~~l------------n~iq-~kKk~e~le 173 (200)
T cd07637 113 VREDLEIALVKNAQAP-----RHKPH-EVEEATSTLTITRKCFRHLALDYVLQI------------NVLQ-AKKKFEILD 173 (200)
T ss_pred HHHHHHHHHHHHhhcC-----CCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH-HHHHHHHHH
Confidence 8888888887632221 22221 224445555667777777777763332 2333 556666555
Q ss_pred HH
Q 017467 225 AN 226 (371)
Q Consensus 225 ~~ 226 (371)
..
T Consensus 174 ~l 175 (200)
T cd07637 174 SM 175 (200)
T ss_pred HH
Confidence 54
No 174
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=21.95 E-value=7.3e+02 Score=23.99 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhH
Q 017467 251 QRLVAMVEGEKNYHLRIAAILGDVE 275 (371)
Q Consensus 251 ~~L~~~veae~~yhq~~~~IL~~L~ 275 (371)
+.+..+++.|..||++++.-|+++.
T Consensus 209 ~~m~~yL~~Qi~Fyq~i~~kLe~a~ 233 (237)
T PF10456_consen 209 SMMKTYLQQQIAFYQQIAEKLEQAL 233 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999988887654
No 175
>PF03333 PapB: Adhesin biosynthesis transcription regulatory protein; InterPro: IPR004356 P pili, or fimbriae, are ~68A in diameter and 1 micron in length, the bulk of which is a fibre composed of the main structural protein PapA []. At its tip, the pilus is terminated by a fibrillum consisting of repeating units of the PapE protein. This, in turn, is topped by the adhesins, PapF and PapG, both of which are needed for receptor binding. The tip fibrillum is anchored to the main PapA fibre by the PapK pilus-adaptor protein. PapH, an outer membrane protein, then anchors the entire rod in the bacterial envelope []. A cytoplasmic chaperone (PapD) assists in assembling the monomers of the macromolecule in the membrane. All of the functional pap genes are arranged in a cluster (operon) on the Escherichia coli genome. It is believed that selective pressure exerted by the host's urinal and intestinal tract isoreceptors forced the spread of this operon to other strains via lateral transfer []. PapB, encoded within the cluster, acts as a transcriptional regulator of the functional pap genes and is located in the bacterial cytoplasm []. Its mechanism involves differential binding to separate sites in the cluster, suggesting that this protein is both an activator and repressor of pilus-adhesion transcription. The protein shares similarity with other E. coli fimbrial- adhesion transcription regulators, such as AfaA, DaaA and FanB. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 3M8J_A.
Probab=21.80 E-value=1.7e+02 Score=24.32 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHHHH
Q 017467 85 RDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAAAI 134 (371)
Q Consensus 85 ~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~ 134 (371)
.+|+.+.+.+-+-|+|+-|+ |.+||-..+ .|+.++-.
T Consensus 40 ~kiI~AL~dyLV~G~srkea-------c~~~gV~~s------yfs~~L~r 76 (91)
T PF03333_consen 40 EKIIAALRDYLVDGLSRKEA-------CERHGVNQS------YFSRALNR 76 (91)
T ss_dssp HHHHHHHHHHHTT---HHHH-------HHHTT--HH------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHH-------HHHhCCCHH------HHHHHHHH
Confidence 46999999999999999887 888998755 57665533
No 176
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.27 E-value=6.8e+02 Score=23.37 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=72.3
Q ss_pred HHHHHHHHhhhhchhhh-------hHHHHHHHHHHhhcCcchhhhhhhHhHHHhhhhccCCCCCCCCchhHHH-------
Q 017467 67 HQQLEKLYRSTRGTKDF-------QRDLVKVAEVFTAIGYKHIEAGTKLSEDCCRYGAENNQNINENILPKAA------- 132 (371)
Q Consensus 67 ~~~~~~~~~~~~~~~~~-------q~~~vr~~~~~~~~~~~q~E~~~~l~e~~~kYg~e~~~~~~~~~l~~A~------- 132 (371)
-+.|+||+.+-++--.. |+-.+.+++.|-.- ++--+ .++.+|.|+|.-+.+ =+.+-..|
T Consensus 15 ~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~-~~~d~---~i~~~l~kF~~~l~e---l~~~~~~L~~q~~~~ 87 (200)
T cd07603 15 ETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDY-FRDDS---LVQNCLNKFIQALQE---MNNFHTILLDQAQRT 87 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCcH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 36788888777664443 56677777776653 33323 478999999987651 11121111
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhcChhhhhhhhhhhHHhhhhHHHHHHHHHHH
Q 017467 133 -------------AIYGDARKHVEKEQEDFNRLLSSQVLDPLRAMITGAPLEDARHLAQRYSRMRQEAETQAVEVSK 196 (371)
Q Consensus 133 -------------~~~g~a~~~~~~~~~~l~~~~~~~~~~PL~~~~~~~~~e~~R~L~~dy~r~Rq~~e~~~~ev~r 196 (371)
-.+=++.+..+++++.+|..+.-+.--|-.. | ...+.-+.....-|..+...+.|+--
T Consensus 88 i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~K~K-----~-~~~~Ea~~~L~~~Rk~f~~~sldyv~ 158 (200)
T cd07603 88 VSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAPRSK-----P-QEAEEATNILTATRSCFRHTALDYVL 158 (200)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2366888888888888888888766666321 2 12233344555677777777777633
No 177
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=20.47 E-value=7.6e+02 Score=23.63 Aligned_cols=46 Identities=11% Similarity=0.186 Sum_probs=30.5
Q ss_pred hhhHhHHHhhhhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 017467 105 GTKLSEDCCRYGAENNQNINENILPKAAAIYGDARKHVEKEQEDFNRLLSSQV 157 (371)
Q Consensus 105 ~~~l~e~~~kYg~e~~~~~~~~~l~~A~~~~g~a~~~~~~~~~~l~~~~~~~~ 157 (371)
+..+.|++.|-|.-.. ++. +.-++|+++.+|.+...++...+...+
T Consensus 43 ~~~~~dAl~kia~~A~----~s~---~sk~lG~~L~~i~~~~r~ie~~l~~~~ 88 (223)
T cd07605 43 AKVFFDALAKIGELAS----QSR---GSQELGEALKQIVDTHKSIEASLEQVA 88 (223)
T ss_pred HHHHHHHHHHHHHHhc----cCC---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554333 333 667899999999998888887777665
No 178
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.13 E-value=7.7e+02 Score=23.58 Aligned_cols=24 Identities=4% Similarity=0.275 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 017467 251 QRLVAMVEGEKNYHLRIAAILGDV 274 (371)
Q Consensus 251 ~~L~~~veae~~yhq~~~~IL~~L 274 (371)
+.+..+++.|..||+.++.-|.+.
T Consensus 180 ~~M~~yL~~QI~Fyq~v~~kl~~~ 203 (207)
T cd07670 180 SQMQHFLQQQIRFFQKVTQKLEEA 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357779999999999998877654
Done!