Query 017470
Match_columns 371
No_of_seqs 144 out of 1292
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:51:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 100.0 7.3E-46 1.6E-50 384.6 42.5 332 12-346 1-384 (621)
2 PRK10669 putative cation:proto 100.0 1.7E-44 3.6E-49 372.0 42.3 333 12-346 2-392 (558)
3 PLN03159 cation/H(+) antiporte 100.0 2E-44 4.4E-49 383.2 38.2 345 15-363 42-458 (832)
4 PRK03659 glutathione-regulated 100.0 1.4E-43 3.1E-48 366.8 41.6 323 16-344 5-379 (601)
5 COG0475 KefB Kef-type K+ trans 100.0 1.1E-42 2.3E-47 343.2 39.7 323 13-340 3-382 (397)
6 COG4651 RosB Kef-type K+ trans 100.0 4E-39 8.8E-44 293.4 30.1 334 11-346 1-392 (408)
7 PRK05326 potassium/proton anti 100.0 3.7E-34 7.9E-39 295.3 32.1 325 16-345 6-390 (562)
8 KOG1650 Predicted K+/H+-antipo 100.0 4.9E-32 1.1E-36 285.0 29.3 337 15-355 22-435 (769)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 1.5E-35 3.3E-40 291.8 -1.8 314 23-341 3-377 (380)
10 TIGR00932 2a37 transporter, mo 100.0 1.7E-29 3.7E-34 238.3 26.7 219 26-248 2-273 (273)
11 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 4.8E-22 1E-26 205.8 33.2 289 22-314 20-386 (810)
12 COG3263 NhaP-type Na+/H+ and K 99.9 7.3E-22 1.6E-26 188.8 22.8 309 17-333 8-376 (574)
13 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 7E-21 1.5E-25 194.6 30.9 277 23-307 5-363 (525)
14 COG0025 NhaP NhaP-type Na+/H+ 99.9 2.2E-20 4.7E-25 186.2 33.5 291 17-310 7-368 (429)
15 TIGR00840 b_cpa1 sodium/hydrog 99.8 1.1E-17 2.3E-22 171.6 28.5 266 69-341 128-415 (559)
16 PRK14853 nhaA pH-dependent sod 99.6 2.1E-12 4.5E-17 126.8 28.6 235 82-343 132-396 (423)
17 KOG1965 Sodium/hydrogen exchan 99.5 2E-12 4.3E-17 129.3 22.9 320 18-341 37-453 (575)
18 KOG4505 Na+/H+ antiporter [Ino 99.4 9.2E-12 2E-16 116.2 18.3 238 69-310 127-382 (467)
19 TIGR00773 NhaA Na+/H+ antiport 99.2 3E-09 6.5E-14 102.8 23.1 202 83-311 123-344 (373)
20 PRK14856 nhaA pH-dependent sod 98.8 1.1E-06 2.4E-11 86.6 21.3 233 83-342 138-431 (438)
21 PRK09560 nhaA pH-dependent sod 98.7 5.1E-06 1.1E-10 80.8 21.3 232 83-341 130-384 (389)
22 PRK09561 nhaA pH-dependent sod 98.6 7.7E-06 1.7E-10 79.4 21.6 232 83-341 130-383 (388)
23 PRK14854 nhaA pH-dependent sod 98.6 1.3E-05 2.7E-10 77.7 22.4 233 83-341 126-378 (383)
24 PRK14855 nhaA pH-dependent sod 98.6 1.3E-05 2.8E-10 78.8 21.8 227 83-339 133-411 (423)
25 PF06965 Na_H_antiport_1: Na+/ 98.3 4.2E-06 9.2E-11 81.1 10.1 205 83-314 126-354 (378)
26 COG3004 NhaA Na+/H+ antiporter 98.2 0.00025 5.5E-09 66.9 20.4 230 83-341 133-385 (390)
27 PRK12460 2-keto-3-deoxyglucona 97.8 0.00052 1.1E-08 65.1 14.4 150 189-345 151-307 (312)
28 KOG1966 Sodium/hydrogen exchan 97.8 8.6E-06 1.9E-10 82.2 2.6 228 67-306 156-407 (670)
29 TIGR00932 2a37 transporter, mo 97.3 0.018 3.9E-07 54.1 17.7 109 191-299 5-115 (273)
30 PRK03562 glutathione-regulated 97.0 0.058 1.3E-06 56.9 19.0 115 185-299 12-127 (621)
31 COG0475 KefB Kef-type K+ trans 97.0 0.059 1.3E-06 53.7 18.0 116 184-299 12-131 (397)
32 PRK10669 putative cation:proto 96.9 0.063 1.4E-06 55.9 18.5 133 186-320 14-147 (558)
33 TIGR00793 kdgT 2-keto-3-deoxyg 96.8 0.017 3.7E-07 54.5 11.3 148 189-343 156-311 (314)
34 PRK03659 glutathione-regulated 96.8 0.13 2.9E-06 54.1 19.2 112 185-297 12-125 (601)
35 PF03812 KdgT: 2-keto-3-deoxyg 96.6 0.014 2.9E-07 55.4 9.5 138 200-343 166-311 (314)
36 PF03601 Cons_hypoth698: Conse 96.5 0.11 2.3E-06 49.9 15.3 142 199-342 23-170 (305)
37 COG0786 GltS Na+/glutamate sym 96.3 1 2.2E-05 44.2 20.2 106 186-291 226-342 (404)
38 COG2855 Predicted membrane pro 96.2 0.17 3.7E-06 48.6 14.6 144 196-341 31-178 (334)
39 PRK05326 potassium/proton anti 96.2 0.2 4.2E-06 52.3 16.4 114 186-299 14-131 (562)
40 TIGR00698 conserved hypothetic 95.9 0.42 9E-06 46.4 16.0 141 200-342 29-176 (335)
41 PRK05274 2-keto-3-deoxyglucona 95.8 0.076 1.6E-06 51.3 10.1 136 204-343 175-313 (326)
42 PLN03159 cation/H(+) antiporte 95.6 0.58 1.3E-05 51.2 17.4 69 187-255 52-131 (832)
43 TIGR00831 a_cpa1 Na+/H+ antipo 95.3 0.51 1.1E-05 48.8 14.9 116 187-302 7-123 (525)
44 PF05684 DUF819: Protein of un 94.7 1.4 2.9E-05 43.7 15.5 95 204-302 242-336 (378)
45 PF03956 DUF340: Membrane prot 93.6 1 2.2E-05 40.2 10.9 128 206-341 2-138 (191)
46 TIGR00210 gltS sodium--glutama 93.1 10 0.00022 37.8 19.6 115 231-346 65-187 (398)
47 COG4651 RosB Kef-type K+ trans 93.1 0.88 1.9E-05 43.2 9.9 119 185-306 13-135 (408)
48 TIGR00844 c_cpa1 na(+)/h(+) an 92.9 1.6 3.5E-05 47.0 12.8 69 231-299 74-144 (810)
49 COG1346 LrgB Putative effector 92.9 7.4 0.00016 35.5 16.0 109 222-341 62-171 (230)
50 TIGR03082 Gneg_AbrB_dup membra 92.8 5.6 0.00012 34.1 16.6 120 187-313 4-128 (156)
51 PF00999 Na_H_Exchanger: Sodiu 92.7 0.013 2.8E-07 57.6 -2.9 110 190-299 8-123 (380)
52 COG0786 GltS Na+/glutamate sym 92.0 0.73 1.6E-05 45.2 8.2 111 230-341 66-183 (404)
53 PF03616 Glt_symporter: Sodium 91.2 2.6 5.7E-05 41.6 11.4 112 231-343 65-184 (368)
54 TIGR00946 2a69 he Auxin Efflux 90.5 6.4 0.00014 37.8 13.3 135 202-340 181-319 (321)
55 COG0679 Predicted permeases [G 88.5 12 0.00027 35.8 13.5 138 200-341 165-307 (311)
56 TIGR00783 ccs citrate carrier 88.3 7.1 0.00015 38.1 11.5 101 201-301 203-311 (347)
57 PF03616 Glt_symporter: Sodium 86.6 35 0.00076 33.7 22.9 89 200-288 245-338 (368)
58 PRK10711 hypothetical protein; 86.6 16 0.00034 33.6 12.2 104 227-341 65-169 (231)
59 PF03977 OAD_beta: Na+-transpo 86.1 15 0.00033 35.4 12.2 107 232-346 68-178 (360)
60 TIGR03136 malonate_biotin Na+- 85.3 28 0.00062 34.1 13.7 109 233-348 105-217 (399)
61 PF05145 AmoA: Putative ammoni 85.0 38 0.00082 32.7 24.6 151 184-343 158-315 (318)
62 COG0025 NhaP NhaP-type Na+/H+ 83.8 15 0.00033 37.0 11.9 67 233-299 64-132 (429)
63 PF04172 LrgB: LrgB-like famil 82.9 27 0.00057 31.8 11.9 90 248-341 69-158 (215)
64 TIGR00659 conserved hypothetic 82.2 33 0.00072 31.4 12.3 98 233-341 71-168 (226)
65 PRK09903 putative transporter 79.0 56 0.0012 31.2 13.5 133 203-341 173-310 (314)
66 COG3329 Predicted permease [Ge 78.9 35 0.00076 32.6 11.4 121 202-322 16-137 (372)
67 TIGR00210 gltS sodium--glutama 78.1 18 0.00039 36.1 10.0 90 200-290 243-337 (398)
68 PRK04288 antiholin-like protei 77.8 58 0.0013 30.0 19.9 105 226-341 69-174 (232)
69 COG3180 AbrB Putative ammonia 77.2 76 0.0017 31.1 16.3 149 185-342 13-168 (352)
70 PF03547 Mem_trans: Membrane t 74.6 37 0.00079 33.2 11.2 103 204-307 8-115 (385)
71 PF05684 DUF819: Protein of un 74.1 78 0.0017 31.4 13.2 90 231-323 56-149 (378)
72 TIGR00841 bass bile acid trans 70.2 71 0.0015 30.2 11.6 103 205-309 143-248 (286)
73 COG0385 Predicted Na+-dependen 69.0 1.1E+02 0.0025 29.5 21.3 67 270-341 236-304 (319)
74 TIGR01109 Na_pump_decarbB sodi 68.1 45 0.00097 32.2 9.4 108 233-348 63-180 (354)
75 PF05145 AmoA: Putative ammoni 67.9 1.2E+02 0.0026 29.2 12.9 128 206-342 3-135 (318)
76 PF13593 DUF4137: SBF-like CPA 62.7 1.5E+02 0.0032 28.5 13.3 48 205-254 7-55 (313)
77 PF03547 Mem_trans: Membrane t 60.7 1.2E+02 0.0026 29.6 11.6 132 203-337 244-384 (385)
78 PF05982 DUF897: Domain of unk 60.3 1.6E+02 0.0036 28.5 11.7 55 271-325 68-123 (327)
79 PF03390 2HCT: 2-hydroxycarbox 60.0 1.9E+02 0.0042 29.0 18.1 135 200-334 58-202 (414)
80 TIGR03802 Asp_Ala_antiprt aspa 59.3 2.3E+02 0.005 29.6 16.3 81 202-288 35-119 (562)
81 PF03601 Cons_hypoth698: Conse 57.4 1.8E+02 0.004 27.9 19.0 34 222-255 264-297 (305)
82 PRK04972 putative transporter; 55.3 2.7E+02 0.0058 29.2 15.0 79 204-287 39-120 (558)
83 TIGR00840 b_cpa1 sodium/hydrog 49.5 2.8E+02 0.0061 29.0 12.6 73 232-304 69-150 (559)
84 PRK15477 oxaloacetate decarbox 46.1 79 0.0017 31.2 7.1 109 233-348 134-251 (433)
85 PRK15476 oxaloacetate decarbox 46.1 79 0.0017 31.2 7.1 109 233-348 134-251 (433)
86 PRK15475 oxaloacetate decarbox 45.9 80 0.0017 31.1 7.2 109 233-348 134-251 (433)
87 PF03390 2HCT: 2-hydroxycarbox 45.0 3.1E+02 0.0067 27.6 11.3 108 195-302 264-379 (414)
88 PRK14854 nhaA pH-dependent sod 42.7 2.1E+02 0.0046 28.4 9.7 21 231-251 60-80 (383)
89 COG3180 AbrB Putative ammonia 39.1 3.9E+02 0.0084 26.3 26.9 151 183-342 190-347 (352)
90 TIGR01625 YidE_YbjL_dupl AspT/ 38.5 1.3E+02 0.0029 25.7 6.8 87 205-293 24-120 (154)
91 PRK12671 putative monovalent c 37.6 2.3E+02 0.005 23.3 12.2 23 323-345 76-98 (120)
92 PRK14855 nhaA pH-dependent sod 37.0 2.4E+02 0.0051 28.5 9.2 22 231-252 67-88 (423)
93 COG3263 NhaP-type Na+/H+ and K 36.9 4.8E+02 0.01 26.7 11.2 106 194-299 23-132 (574)
94 TIGR00946 2a69 he Auxin Efflux 36.4 2.5E+02 0.0055 26.7 9.3 104 204-307 12-121 (321)
95 PRK14853 nhaA pH-dependent sod 35.1 4.9E+02 0.011 26.3 12.9 20 231-250 66-85 (423)
96 PF02673 BacA: Bacitracin resi 34.6 3.4E+02 0.0073 25.4 9.4 80 266-345 160-240 (259)
97 PRK09903 putative transporter 34.0 4.2E+02 0.009 25.2 10.7 50 204-253 11-62 (314)
98 PRK04972 putative transporter; 32.2 5E+02 0.011 27.2 11.2 97 201-299 409-514 (558)
99 PRK09561 nhaA pH-dependent sod 31.3 2.6E+02 0.0057 27.8 8.3 22 231-252 63-84 (388)
100 TIGR00832 acr3 arsenical-resis 29.9 3E+02 0.0066 26.6 8.6 108 205-312 184-302 (328)
101 TIGR00698 conserved hypothetic 29.0 5.5E+02 0.012 25.0 24.1 34 222-255 272-305 (335)
102 PRK09560 nhaA pH-dependent sod 28.7 2.8E+02 0.0061 27.6 8.1 21 231-251 63-83 (389)
103 PRK14856 nhaA pH-dependent sod 28.2 4E+02 0.0086 27.0 9.1 22 231-252 72-93 (438)
104 TIGR03082 Gneg_AbrB_dup membra 27.7 92 0.002 26.5 4.1 32 23-54 2-35 (156)
105 PF03818 MadM: Malonate/sodium 26.7 1.8E+02 0.004 20.7 4.6 40 17-56 13-55 (60)
106 PF12832 MFS_1_like: MFS_1 lik 26.2 2.7E+02 0.0059 20.5 7.0 58 295-352 13-70 (77)
107 COG4666 TRAP-type uncharacteri 25.6 8.4E+02 0.018 26.0 14.4 80 17-109 454-536 (642)
108 TIGR00773 NhaA Na+/H+ antiport 24.9 4E+02 0.0086 26.4 8.3 22 231-252 56-77 (373)
109 KOG1965 Sodium/hydrogen exchan 23.8 5.1E+02 0.011 27.2 9.2 69 233-303 103-180 (575)
110 PRK10712 PTS system fructose-s 23.7 1.4E+02 0.0031 31.3 5.3 52 188-240 300-356 (563)
111 TIGR00841 bass bile acid trans 22.9 6.4E+02 0.014 23.7 12.9 49 236-284 14-65 (286)
112 PRK10478 putative PTS system f 22.7 5.2E+02 0.011 25.5 8.7 49 190-239 89-141 (359)
113 PF06965 Na_H_antiport_1: Na+/ 22.7 84 0.0018 31.1 3.2 21 231-251 59-79 (378)
114 COG3493 CitS Na+/citrate sympo 21.2 8.4E+02 0.018 24.4 11.3 76 226-302 318-398 (438)
115 PRK03818 putative transporter; 21.1 9.6E+02 0.021 25.0 14.8 82 206-287 34-121 (552)
116 COG1883 OadB Na+-transporting 20.7 1.2E+02 0.0026 29.0 3.6 143 211-363 59-208 (375)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=7.3e-46 Score=384.59 Aligned_cols=332 Identities=25% Similarity=0.392 Sum_probs=286.4
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhhH------HH-------------------
Q 017470 12 QVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ------------------- 66 (371)
Q Consensus 12 ~~~~~~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~~------~e------------------- 66 (371)
+++++++.++.+++.++.++++++||+|+|+++||+++|+++||+++|++++. .|
T Consensus 1 ~~~~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l 80 (621)
T PRK03562 1 MMDSHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRL 80 (621)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 35677999999999999999999999999999999999999999999987521 11
Q ss_pred ---------------------------HcCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Q 017470 67 ---------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAV 119 (371)
Q Consensus 67 ---------------------------llG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~ 119 (371)
++|++|..++++|.+++.||+++++++++|++..+++.||.+++++++||+.+
T Consensus 81 ~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~ 160 (621)
T PRK03562 81 WKLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAA 160 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 017470 120 GLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDK 199 (371)
Q Consensus 120 ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~ 199 (371)
+++++++..+....... ..........+.+++++..++.++|+.++++++..+ .+.+|.+....+.++++.++++++
T Consensus 161 i~ll~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~--~~~~e~~~~~~l~lv~~~a~la~~ 237 (621)
T PRK03562 161 IPLVAMIPLLAASGAST-TLGAFALSALKVAGALALVVLGGRYVTRPALRFVAR--SGLREVFTAVALFLVFGFGLLMEE 237 (621)
T ss_pred HHHHHHHHHHccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHHHHHH
Confidence 99888876554321110 111112222333333444566688889999998876 356888877788888999999999
Q ss_pred hCchHHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 200 LGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK 279 (371)
Q Consensus 200 ~g~s~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~ 279 (371)
+|+|+.+|||++|+++++.++++++++++++++++|.|+||+++|+++|++.+.++++.++.+++..+++|+++++..++
T Consensus 238 ~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~ 317 (621)
T PRK03562 238 VGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLAR 317 (621)
T ss_pred hCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776666666666788999999999999
Q ss_pred HhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhhhhhhh
Q 017470 280 LFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMN 346 (371)
Q Consensus 280 ~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~~~~~~ 346 (371)
..|+++++++.+|+.|+|+||++++++.++.+.|.++++.++.+++++++|++++|++.++++|...
T Consensus 318 ~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~~ 384 (621)
T PRK03562 318 PLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQ 384 (621)
T ss_pred HhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998877543
No 2
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=372.01 Aligned_cols=333 Identities=30% Similarity=0.488 Sum_probs=279.3
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhh------HHH-------------------
Q 017470 12 QVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------LVQ------------------- 66 (371)
Q Consensus 12 ~~~~~~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~------~~e------------------- 66 (371)
++...++..++++++.+.+++.++||+|+|+++||+++|+++||+++|.+++ +.|
T Consensus 2 ~~~~~~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l 81 (558)
T PRK10669 2 HHATPLITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDL 81 (558)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHH
Confidence 3444677788999999999999999999999999999999999999887642 111
Q ss_pred ---------------------------HcCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Q 017470 67 ---------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAV 119 (371)
Q Consensus 67 ---------------------------llG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~ 119 (371)
.+|+++..++++|.+++.||+++++++++|+|..+++.||++++++++||+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~ 161 (558)
T PRK10669 82 MAVKSIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVM 161 (558)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc---CC-Cchh-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 017470 120 GLLFALLPVLGG---NS-GLLQ-GMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSA 194 (371)
Q Consensus 120 ii~l~i~~~~~~---~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~ 194 (371)
++++.++..+.+ ++ .+.. ....+.+.++...+++++..+++|+..+|+.++.++ .+.+|.+....++++++.+
T Consensus 162 i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~e~~~l~~l~~~l~~a 239 (558)
T PRK10669 162 VLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA--TGSRELFTLSVLALALGIA 239 (558)
T ss_pred HHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHH
Confidence 888877654332 11 1110 111223333444455556677788889999988865 3467877766777777777
Q ss_pred HH-HHHhCchHHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 017470 195 WC-SDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAV 273 (371)
Q Consensus 195 ~i-a~~~g~s~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~ 273 (371)
+. ++.+|+|+.+|||++|+++++.+.++++.++..+++++|.|+||+++|+++|+..+.+.+..+...++..+++|+++
T Consensus 240 ~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~ 319 (558)
T PRK10669 240 FGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLA 319 (558)
T ss_pred HHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 69999999999999999999988888888888889999999999999999999988766544555666688999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhhhhhhh
Q 017470 274 GTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMN 346 (371)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~~~~~~ 346 (371)
++..++..|+++|+++.+|+.|+||||++++++..+++.|+++++.|+.++.++++|++++|++.++.+|...
T Consensus 320 ~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~~~ 392 (558)
T PRK10669 320 AFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERYLA 392 (558)
T ss_pred HHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877554
No 3
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=2e-44 Score=383.23 Aligned_cols=345 Identities=17% Similarity=0.253 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhh----------------HHH------------
Q 017470 15 LRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE----------------LVQ------------ 66 (371)
Q Consensus 15 ~~~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~----------------~~e------------ 66 (371)
..++.|++++++++.+++++++|+|+|.++|||++|+++||+++|.+++ +.+
T Consensus 42 ~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGL 121 (832)
T PLN03159 42 PLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGV 121 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999999999999887631 111
Q ss_pred ----------------------------------HcCCc------hHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHH
Q 017470 67 ----------------------------------LCGAK------LSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQ 106 (371)
Q Consensus 67 ----------------------------------llG~~------~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~ 106 (371)
+++.. ....+++|.++|.||++++.++++|+|+++++.||
T Consensus 122 E~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~Gr 201 (832)
T PLN03159 122 EMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGR 201 (832)
T ss_pred cCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHH
Confidence 11111 12357899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHH
Q 017470 107 VTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAA 186 (371)
Q Consensus 107 ~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~ 186 (371)
++++++++||++++++++++..+...... .. ...+.++..++++++..++.|+..+|+.|+.++. .+.+|.++..+
T Consensus 202 laLsaavv~Dl~~~ilLav~~~l~~~~~~--~~-~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~-~~~~e~~v~~i 277 (832)
T PLN03159 202 IAMSAALVNDMCAWILLALAIALAENDST--SL-ASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEG-ETFSEFYICLI 277 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc--ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC-CCcccchhHHH
Confidence 99999999999999998887655433211 11 1122333344555566677788888888776432 23456677777
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHhccCcchhHHHHHhhhcHH-HHHhHHHHHHhccccchhhhhHH--HHHHHHHH
Q 017470 187 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLWNH--VDILLASV 263 (371)
Q Consensus 187 l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~~~~~~~~l~~i~-~~f~plFF~~~G~~l~l~~l~~~--~~~~~~~~ 263 (371)
++.++++++++|.+|+|+++|||++|+++|+.+.++++.++++++. ++|+|+||+++|+++|+..+.+. +..+..++
T Consensus 278 l~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~li 357 (832)
T PLN03159 278 LTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVI 357 (832)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHH
Confidence 7888889999999999999999999999999888889999999984 89999999999999999887643 33334556
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHH-HHHHHHhHHHHhhhh
Q 017470 264 ILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT-ALSLVTTPLLFKLIP 342 (371)
Q Consensus 264 ~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~v-ils~l~~p~~~~~~~ 342 (371)
++++++|++++++++++.|++++|++.+|+.|++||+++++++.+|++.|.++++.|+++++++ +.|++++|++.+.++
T Consensus 358 v~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~ 437 (832)
T PLN03159 358 IMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYR 437 (832)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence 6678999999999999999999999999999999999999999999999999999999988665 578899999999888
Q ss_pred hhhhhhhhhccCCCCCCCCCC
Q 017470 343 NVMNLGILLHWFPSEGTPRSE 363 (371)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~ 363 (371)
|.+|+..++|+-.....+++|
T Consensus 438 p~rk~~~~~~r~i~~~~~~~e 458 (832)
T PLN03159 438 PARRLVGYKRRTIQRSKHDAE 458 (832)
T ss_pred HHhhhccccccccccCCCCCc
Confidence 877776666655443333333
No 4
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.4e-43 Score=366.79 Aligned_cols=323 Identities=33% Similarity=0.499 Sum_probs=278.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhhH------HH-----------------------
Q 017470 16 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ----------------------- 66 (371)
Q Consensus 16 ~~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~~------~e----------------------- 66 (371)
+++.++.+++..+.+++++++|+|+|+++||+++|+++||+++|.+++. .|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~ 84 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLR 84 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4677889999999999999999999999999999999999999987521 11
Q ss_pred -----------------------HcCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHHH
Q 017470 67 -----------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLF 123 (371)
Q Consensus 67 -----------------------llG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~ii~l 123 (371)
.+|+++..++++|.+++.||++++.++++|+|..+++.||++++..++||+.+++++
T Consensus 85 ~~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll 164 (601)
T PRK03659 85 RSIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPAL 164 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCch
Q 017470 124 ALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLS 203 (371)
Q Consensus 124 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s 203 (371)
+++..+.+.......+... .... +.++.....++++.++++++..+ .+.+|.+....+.++++.+++++.+|+|
T Consensus 165 ~l~~~l~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~l~~vl~~a~l~~~~Gls 238 (601)
T PRK03659 165 ALVPLLAGSADEHFDWMKI---GMKV-LAFAGMLIGGRYLLRPLFRFIAA--SGVREVFTAAALLLVLGSALFMDALGLS 238 (601)
T ss_pred HHHHHHhcCCCcchHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHHHhCcc
Confidence 8776555432211112211 1111 22233455678888999888865 3578888888888888999999999999
Q ss_pred HHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 017470 204 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY 283 (371)
Q Consensus 204 ~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~ 283 (371)
+.+|||++|+++++.++++++++++++++++|.|+||+++|+++|++.+.+.+..++.+++..+++|+++++..++..|+
T Consensus 239 ~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~g~ 318 (601)
T PRK03659 239 MALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLYGL 318 (601)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999887776666666667789999999999999999
Q ss_pred ChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 017470 284 SMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNV 344 (371)
Q Consensus 284 ~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~~~~ 344 (371)
++++++.+|+.|+|+||++++++..+.+.|.++++.++.++.++++|++++|++.+.++|.
T Consensus 319 ~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~ 379 (601)
T PRK03659 319 RSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKW 379 (601)
T ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999988764
No 5
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=343.20 Aligned_cols=323 Identities=32% Similarity=0.538 Sum_probs=273.6
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhh-------HHH-------------------
Q 017470 13 VDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE-------LVQ------------------- 66 (371)
Q Consensus 13 ~~~~~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~-------~~e------------------- 66 (371)
++...+.++.+++.++.+.+++++|+|+|+++||+++|+++||.++..+.+ .+|
T Consensus 3 ~~~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l 82 (397)
T COG0475 3 MLSLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERL 82 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHH
Confidence 445578899999999999999999999999999999999999954443321 111
Q ss_pred ---------------------------H--cCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Q 017470 67 ---------------------------L--CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDC 117 (371)
Q Consensus 67 ---------------------------l--lG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di 117 (371)
+ +|+++..++++|.+++.||+++++++++|+|+.++|.||.+++++++||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di 162 (397)
T COG0475 83 KKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDI 162 (397)
T ss_pred HHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 1 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 017470 118 AVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCS 197 (371)
Q Consensus 118 ~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia 197 (371)
.++++++++..+.++++.. ...+...+....++..+....++++.+++.|+.++ .+.+|.....++.+++..++++
T Consensus 163 ~~i~lLai~~~l~~~g~~~--~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~--~~~~e~~~~~~l~i~l~~a~l~ 238 (397)
T COG0475 163 AAILLLAIVPALAGGGSGS--VGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAK--TESSELFILFVLLLVLGAAYLA 238 (397)
T ss_pred HHHHHHHHHHHHccCCCcc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHH
Confidence 9999999988776543321 11133445555566666677788999999999986 3678888889999999999999
Q ss_pred HHhCchHHHHHHHHHHhccCcchh-HHHHHhhhcHHH-HHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 017470 198 DKLGLSLELGSFMAGVMISTTDFA-KHTLDQVEPIRN-LFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGT 275 (371)
Q Consensus 198 ~~~g~s~~lgaf~aGl~~~~~~~~-~~~~~~l~~i~~-~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~ 275 (371)
|..|+|+.+|||+||+++++.+++ ++++++++++++ +|+|+||+.+|+++|++.+.+++..+...+.+.+.+|.++++
T Consensus 239 e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~ 318 (397)
T COG0475 239 ELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAY 318 (397)
T ss_pred HHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877 799999999998 999999999999999999988877666777788999999999
Q ss_pred HHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhh
Q 017470 276 IVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKL 340 (371)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~ 340 (371)
..+|..|.++|++...|..+.++||++++.+..+.+ +.++++.++..+.+.++++.+.|...+.
T Consensus 319 ~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~ 382 (397)
T COG0475 319 LAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPI 382 (397)
T ss_pred HHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988765 4677887777666655555555544443
No 6
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-39 Score=293.41 Aligned_cols=334 Identities=31% Similarity=0.527 Sum_probs=294.1
Q ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhh------HHH------------------
Q 017470 11 LQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------LVQ------------------ 66 (371)
Q Consensus 11 ~~~~~~~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~------~~e------------------ 66 (371)
||||.+++..+..-+.++.++|.++.|+|+|+.+||+++|+..||+..|++.| ++|
T Consensus 1 m~h~tpli~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkd 80 (408)
T COG4651 1 MHHDTPLITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKD 80 (408)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHH
Confidence 57888889999999999999999999999999999999999999998887753 121
Q ss_pred ----------------------------HcCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Q 017470 67 ----------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCA 118 (371)
Q Consensus 67 ----------------------------llG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~ 118 (371)
++||++...+++|.++|..|+.+..|-++|+++.+++.||++++..+++|+.
T Consensus 81 LLavk~iAipgAl~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~ 160 (408)
T COG4651 81 LLAVKAIAIPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLA 160 (408)
T ss_pred HhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHH
Confidence 6788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC--CCc--h-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHH
Q 017470 119 VGLLFALLPVLGGN--SGL--L-QGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLS 193 (371)
Q Consensus 119 ~ii~l~i~~~~~~~--~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~ 193 (371)
.++.+.....+++- +.+ . +....++....+...|+.+..+++|++.||+.++... ..++|.+.+..++++++.
T Consensus 161 mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~--tGsrElf~L~vla~ALgV 238 (408)
T COG4651 161 MVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA--TGSRELFTLAVLAIALGV 238 (408)
T ss_pred HHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHH
Confidence 88887777655431 111 1 1123455666777888888999999999999999986 578999988888888886
Q ss_pred HH-HHHHhCchHHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 017470 194 AW-CSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTA 272 (371)
Q Consensus 194 ~~-ia~~~g~s~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~ 272 (371)
++ .++.+|.|+.+|||++|+++++++..|+..|..-+++|.|...||+++||.+|+..+.+.+..+.+.+++...+|-.
T Consensus 239 a~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~ 318 (408)
T COG4651 239 AFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSV 318 (408)
T ss_pred hhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHH
Confidence 65 46889999999999999999999999999999999999999999999999999998877666666677778899999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhhhhhhh
Q 017470 273 VGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMN 346 (371)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~~~~~~ 346 (371)
..+...+.+|.+.|+++.++.++.|.|||+++++..+.+.+++++.--..++...++|++..|++++..||+.+
T Consensus 319 aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~~~ 392 (408)
T COG4651 319 AAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQR 392 (408)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999888888888999999999999999987554
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=3.7e-34 Score=295.28 Aligned_cols=325 Identities=16% Similarity=0.167 Sum_probs=252.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchh--h--H----HH---------------------
Q 017470 16 RLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS--E--L----VQ--------------------- 66 (371)
Q Consensus 16 ~~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~--~--~----~e--------------------- 66 (371)
.++++++++++++.+++.+++|+|+|.+++|+++|+++||+++|.++ + . .+
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~ 85 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRP 85 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHH
Confidence 46788999999999999999999999999999999999999888542 1 1 10
Q ss_pred --------------------------HcCCchHHHHHHHHHHHhhcHHHHHHHHhhccc-ccChhHHHHHHHHHHHHHHH
Q 017470 67 --------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAV 119 (371)
Q Consensus 67 --------------------------llG~~~~~al~lg~~ls~TS~~vv~~il~e~~~-~~~~~g~~~l~~avi~Di~~ 119 (371)
++|++|..++++|+++++||++++.++++|.|+ ++++.++++.+++.+||..+
T Consensus 86 ~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~a 165 (562)
T PRK05326 86 ALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMA 165 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHH
Confidence 567899999999999999999999999999995 79999999999999999998
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 017470 120 GLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDK 199 (371)
Q Consensus 120 ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~ 199 (371)
++++.+...+..++.....+..+...+......+++ .++..+...++.++.+. +.++.+...+++.++.+++++|.
T Consensus 166 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-G~~~g~l~~~l~~~~~~---~~~~~~~i~~l~~~l~~~~~a~~ 241 (562)
T PRK05326 166 VFLTITLIELITGGETGLSWGFLLLFLQQFGLGALI-GLLGGWLLVQLLNRIAL---PAEGLYPILVLAGALLIFALTAA 241 (562)
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccC---chhhHHHHHHHHHHHHHHHHHHH
Confidence 887765543332221101122222222222222222 33344566777776532 23455666778888889999999
Q ss_pred hCchHHHHHHHHHHhccCcc--hhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHH-HHHHHHHHHHHHHHH
Q 017470 200 LGLSLELGSFMAGVMISTTD--FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLA-SVILVIIVKTAVGTI 276 (371)
Q Consensus 200 ~g~s~~lgaf~aGl~~~~~~--~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~-~~~~~~~~K~~~~~~ 276 (371)
+|.|+++|+|++|++++|.+ .++++.+..+.+.+++.|+||+.+|+.+|++.+.+.++..+. .++..+++|++++++
T Consensus 242 lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l 321 (562)
T PRK05326 242 LGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFL 321 (562)
T ss_pred HCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 344555666667789999999999999999988765433333 344567999999999
Q ss_pred HHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHHHHHhHHHHhhhhhhh
Q 017470 277 VTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVE-GKMYLLLLGTTALSLVTTPLLFKLIPNVM 345 (371)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~-~~~~~~lv~~vils~l~~p~~~~~~~~~~ 345 (371)
+.+..++++||+..+|+ .++||+++++++.++.+.|..+ ++.+++...++++|+++.+...+...+..
T Consensus 322 ~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l 390 (562)
T PRK05326 322 SLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARKL 390 (562)
T ss_pred HHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHHc
Confidence 99999999999999999 4899999999999999999886 46778888899999998877777654433
No 8
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-32 Score=284.96 Aligned_cols=337 Identities=19% Similarity=0.265 Sum_probs=270.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhhHH------------H----------------
Q 017470 15 LRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELV------------Q---------------- 66 (371)
Q Consensus 15 ~~~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~~~------------e---------------- 66 (371)
.-+++|+.++++++.+++.++|++|||+++.++++|+++||+.++...... |
T Consensus 22 pl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl 101 (769)
T KOG1650|consen 22 PLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGL 101 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 447889999999999999999999999999999999999999877553110 0
Q ss_pred --------------------------HcCC-------------------chHHHHHHHHHHHhhcHHHHHHHHhhccccc
Q 017470 67 --------------------------LCGA-------------------KLSEGVFVGSFLSMSSTAVVVKFLVEQNSNN 101 (371)
Q Consensus 67 --------------------------llG~-------------------~~~~al~lg~~ls~TS~~vv~~il~e~~~~~ 101 (371)
..|. .+.+-..+..+.+.||.+++.+++.|+++++
T Consensus 102 ~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~ 181 (769)
T KOG1650|consen 102 EIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLN 181 (769)
T ss_pred hhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchh
Confidence 1111 1124567778899999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhH
Q 017470 102 ALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNEL 181 (371)
Q Consensus 102 ~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~ 181 (371)
++.||+++++++++|+.+|.++.....+.++... .+..+. +.+....++.++...+.++...|+.|+.++ +.+.++.
T Consensus 182 se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe-~~~~~~~ 258 (769)
T KOG1650|consen 182 SELGRLALSAAVVNDVAGWILLALALAFSSELKL-SPLRSV-WDLVLVIGFVLFLFFVVRPLMKWIIKRTPE-GKPVSDA 258 (769)
T ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC-cchHHH-HHHHHHHHHHHheeeehhhhHHHHhhcCCC-CCccccc
Confidence 9999999999999999999877766555554321 112122 223333455555666677777887776432 2235566
Q ss_pred HHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHhccCc-chhHHHHHhhhcHH-HHHhHHHHHHhccccchhhhhHHHHH
Q 017470 182 YQLAAVAFCLLSAWCSDKLG-LSLELGSFMAGVMISTT-DFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDI 258 (371)
Q Consensus 182 ~~~~~l~~~~~~~~ia~~~g-~s~~lgaf~aGl~~~~~-~~~~~~~~~l~~i~-~~f~plFF~~~G~~l~l~~l~~~~~~ 258 (371)
+....+..++.++.+++.++ +|+.+|+|..|+.+|+. |.+..+.++++.+. ++|+|+||+..|++.|+..+.. |..
T Consensus 259 ~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~-~~~ 337 (769)
T KOG1650|consen 259 YICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK-WGA 337 (769)
T ss_pred eehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH-HHH
Confidence 66677777888888999988 99999999999999997 67899999999986 8999999999999999999887 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHH-hHHH
Q 017470 259 LLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVT-TPLL 337 (371)
Q Consensus 259 ~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~-~p~~ 337 (371)
....+.....+|++++...+.+.+.|++|++.+|..|++||.++++....+.+.+.++++.|+++++++++++.+ +|++
T Consensus 338 ~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l 417 (769)
T KOG1650|consen 338 LIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLL 417 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHH
Confidence 445566678999999999999999999999999999999999999999999999999999999999888886655 5666
Q ss_pred HhhhhhhhhhhhhhccCC
Q 017470 338 FKLIPNVMNLGILLHWFP 355 (371)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~ 355 (371)
...+||.+++..++++..
T Consensus 418 ~~~y~p~~~~~~y~~~~i 435 (769)
T KOG1650|consen 418 MFLYDPTRKYHGYKKRGI 435 (769)
T ss_pred HHhcchhhhcCceEeehh
Confidence 666778777776666653
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=1.5e-35 Score=291.85 Aligned_cols=314 Identities=25% Similarity=0.453 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhhH-H------H-----------------------------
Q 017470 23 VVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL-V------Q----------------------------- 66 (371)
Q Consensus 23 lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~~-~------e----------------------------- 66 (371)
++++.+.+.+.++||+|+|.+++|+++|+++||.+++++++. . |
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~ 82 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALAL 82 (380)
T ss_dssp ---------------------------------------------S-SSHHHHS--SSHHHHTTGGGG------------
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 445567777778999999999999999999999988865421 1 0
Q ss_pred -----------------H----cCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHHHHH
Q 017470 67 -----------------L----CGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFAL 125 (371)
Q Consensus 67 -----------------l----lG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~ii~l~i 125 (371)
. .|+++.+++++|.++++||++++.++++|++..+++.++++.+++++||+.+++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~ 162 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSI 162 (380)
T ss_dssp -------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhh
Confidence 2 4568899999999999999999999999988899999999999999999999888776
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHH
Q 017470 126 LPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLE 205 (371)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~ 205 (371)
.....+++... ........+.. .+....+..+..+|+.++..++..+++|.....+++.++..++++|.+|.|+.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~ 237 (380)
T PF00999_consen 163 LISLAQASGQS-SLGQLLLSFLW----IILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEILGLSGI 237 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhcccccc-cccchhcchhh----hhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccccccccccc
Confidence 65443222111 11111111111 11122222234455555554431245666777888888999999999999999
Q ss_pred HHHHHHHHhccCcchhHHHHHhhhcHH-HHHhHHHHHHhccccchhhhh--H-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017470 206 LGSFMAGVMISTTDFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLW--N-HVDILLASVILVIIVKTAVGTIVTKLF 281 (371)
Q Consensus 206 lgaf~aGl~~~~~~~~~~~~~~l~~i~-~~f~plFF~~~G~~l~l~~l~--~-~~~~~~~~~~~~~~~K~~~~~~~~~~~ 281 (371)
+|+|++|+++++.+.++++.|+++++. +++.|+||+.+|+++|.+.+. . .+...+.+.+...++|+++++...+..
T Consensus 238 l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 317 (380)
T PF00999_consen 238 LGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRLF 317 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhhc
Confidence 999999999998888888999999998 899999999999999998884 2 333344555567799999999999999
Q ss_pred CCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 282 GYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 282 ~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
|.++||+..+|+.+.+||+++++++..+.+.|.++++.++.++.++++|+++.|+..+..
T Consensus 318 ~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l 377 (380)
T PF00999_consen 318 GIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPL 377 (380)
T ss_dssp -----HHHHTTTTSS--HHHHHHHHHHHHH------------------------------
T ss_pred ccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999888765
No 10
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.97 E-value=1.7e-29 Score=238.26 Aligned_cols=219 Identities=35% Similarity=0.583 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhhH------HH---------------------------------
Q 017470 26 VSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEL------VQ--------------------------------- 66 (371)
Q Consensus 26 ~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~~------~e--------------------------------- 66 (371)
+++.+.+.++||+|+|++++|+++|+++||+++|.+++. .+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~ 81 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ 81 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999988876421 10
Q ss_pred --------------HcCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 017470 67 --------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGN 132 (371)
Q Consensus 67 --------------llG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~ 132 (371)
.+|+++..++++|+++++||++++.++++|+|..+++.||++++++++||+.+++.+++.....++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~ 161 (273)
T TIGR00932 82 VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATS 161 (273)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567889999999999999999999999999999999999999999999999999988877655432
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Q 017470 133 SGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAG 212 (371)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aG 212 (371)
.+. ...+.........++..+...+.++..+|+.|+.++ .+++|.....++..++..++++|.+|.|+.+|||++|
T Consensus 162 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~la~~~g~s~~lgaf~aG 237 (273)
T TIGR00932 162 AST--EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE--LRPSELFTAGSLLLMFGSAYFADLLGLSMALGAFLAG 237 (273)
T ss_pred CCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 111 111222223233333344556677788888887765 2345777777888888899999999999999999999
Q ss_pred HhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccc
Q 017470 213 VMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIH 248 (371)
Q Consensus 213 l~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~ 248 (371)
+.++|.+.++++.++++++.++|.|+||+++|+++|
T Consensus 238 l~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 238 VVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 999998878889999999999999999999999987
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.92 E-value=4.8e-22 Score=205.81 Aligned_cols=289 Identities=14% Similarity=0.131 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhh------------HHH-----------------------
Q 017470 22 VVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE------------LVQ----------------------- 66 (371)
Q Consensus 22 ~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~------------~~e----------------------- 66 (371)
+++++.+++..++.+|+.+|..+.++++|+++||.++|++++ +.|
T Consensus 20 ~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~w 99 (810)
T TIGR00844 20 IFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHW 99 (810)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhH
Confidence 345555565566666999999999999999999998876541 111
Q ss_pred ------------------------H-cCCchHHHHHHHHHHHhhcHHHHHHHHhh---cccccChhHHHHHHHHHHHHHH
Q 017470 67 ------------------------L-CGAKLSEGVFVGSFLSMSSTAVVVKFLVE---QNSNNALHGQVTIGTLILQDCA 118 (371)
Q Consensus 67 ------------------------l-lG~~~~~al~lg~~ls~TS~~vv~~il~e---~~~~~~~~g~~~l~~avi~Di~ 118 (371)
+ .|++|..|+++|+++++|+|.....+++. .+ ...++..++.+++.+||..
T Consensus 100 rsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ESGlNDGl 178 (810)
T TIGR00844 100 VSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSCESGCNDGL 178 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhhhhhcccHH
Confidence 2 58999999999999999999988888873 33 5678888889999999999
Q ss_pred HHHHHHHHHHhh--cC-CCch-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 017470 119 VGLLFALLPVLG--GN-SGLL-QGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSA 194 (371)
Q Consensus 119 ~ii~l~i~~~~~--~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~ 194 (371)
+++++.+...+. .+ ++.. ..| .....+..+++.+++++++| ++..|+.++..+++...++.+....+++++.++
T Consensus 179 Afpfv~LaL~ll~~~~~g~~~~~~w-~l~~~L~~i~~GiliG~vvG-~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~~ 256 (810)
T TIGR00844 179 AFPFVFLSMDLLLYPGRGGEIVKDW-ICVTILWECIFGSILGCIIG-YCGRKAIRFAEGKNIIDRESFLAFYLILALTCA 256 (810)
T ss_pred HHHHHHHHHHHHhccCccccchhhH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence 887654332222 11 1111 111 11122222223334455555 466777777764322345555566677788888
Q ss_pred HHHHHhCchHHHHHHHHHHhccCcch-hHHH-HHhhhcH-HHHHhHHHHHHhccccchhhhhH-----H-HHHHHHHHHH
Q 017470 195 WCSDKLGLSLELGSFMAGVMISTTDF-AKHT-LDQVEPI-RNLFAALFLSSIGMLIHVHFLWN-----H-VDILLASVIL 265 (371)
Q Consensus 195 ~ia~~~g~s~~lgaf~aGl~~~~~~~-~~~~-~~~l~~i-~~~f~plFF~~~G~~l~l~~l~~-----~-~~~~~~~~~~ 265 (371)
.+++.+|.++++++|+||+++++... .++. .+.+... ..++...+|+++|+.+....+.. . |..+++.+++
T Consensus 257 gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~L 336 (810)
T TIGR00844 257 GFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVV 336 (810)
T ss_pred HHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHH
Confidence 89999999999999999999998632 2211 1222223 24889999999999998877643 2 3223344555
Q ss_pred HHHHHHHHHHHHHHHh--CCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Q 017470 266 VIIVKTAVGTIVTKLF--GYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHL 314 (371)
Q Consensus 266 ~~~~K~~~~~~~~~~~--~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~ 314 (371)
.++.|+..+++..... ..++||++++|| .+|||..++.++.+|.+++.
T Consensus 337 ifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 337 IFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 6788988888765543 368999999999 89999999999999987765
No 12
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.90 E-value=7.3e-22 Score=188.76 Aligned_cols=309 Identities=17% Similarity=0.186 Sum_probs=243.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchh----hHH-------------H-------------
Q 017470 17 LISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFIS----ELV-------------Q------------- 66 (371)
Q Consensus 17 ~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~----~~~-------------e------------- 66 (371)
+++.-.+++.++.+...++.|+|.|..+-++..|++.|..+++.++ +++ |
T Consensus 8 ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a 87 (574)
T COG3263 8 ILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVA 87 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHH
Confidence 3334448888899999999999999999999999999999988664 111 0
Q ss_pred -------------------------HcCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Q 017470 67 -------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGL 121 (371)
Q Consensus 67 -------------------------llG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~ii 121 (371)
+++.+|.+++++|+++.+|+.+.+..++.+++ +|.+++.+.--++.-||..++.
T Consensus 88 ~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPmAvf 166 (574)
T COG3263 88 AGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPMAVF 166 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCceeee
Confidence 67889999999999999999999999998887 6889999998899999987765
Q ss_pred H-HHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHh
Q 017470 122 L-FALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKL 200 (371)
Q Consensus 122 ~-l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~ 200 (371)
+ ++++....++.++.+ +. +...++...++-++..+.+.++.-++.+|++ -++..+..+.+...++.+.+++.+
T Consensus 167 LTitlieli~~get~l~-~~-~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n----Ld~GL~pil~la~~Ll~fs~t~ai 240 (574)
T COG3263 167 LTITLIELIAGGETNLS-WG-FLLGFLQQFGLGLLLGLGGGKLLLQLINRIN----LDSGLYPILALAGGLLIFSLTGAI 240 (574)
T ss_pred hhHHHHHHHhccccccC-HH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc----cccchhHHHHHHHHHHHHHHHHHh
Confidence 4 455555555533221 11 1111333333333334444456677777663 246667778888888999999999
Q ss_pred CchHHHHHHHHHHhccCcc--hhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 017470 201 GLSLELGSFMAGVMISTTD--FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILL-ASVILVIIVKTAVGTIV 277 (371)
Q Consensus 201 g~s~~lgaf~aGl~~~~~~--~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~-~~~~~~~~~K~~~~~~~ 277 (371)
|-|++++.+++|+.+.|.+ .++.+.+..+.+..+....-|...|+..+++++.+.....+ ..+..++++|++.++++
T Consensus 241 GGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~ 320 (574)
T COG3263 241 GGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLG 320 (574)
T ss_pred cCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHh
Confidence 9999999999999999985 56788888899999999999999999999999887644333 34556789999999999
Q ss_pred HHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchH-HHHHHHHHHHHHHHH
Q 017470 278 TKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGK-MYLLLLGTTALSLVT 333 (371)
Q Consensus 278 ~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~-~~~~lv~~vils~l~ 333 (371)
..-++.++||.++++| -+-||.+++++|....-.|.-+.+ .|++...+++.|.++
T Consensus 321 l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlli 376 (574)
T COG3263 321 LIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLI 376 (574)
T ss_pred hcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHH
Confidence 9999999999999999 799999999999999888886654 557766777777765
No 13
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.89 E-value=7e-21 Score=194.63 Aligned_cols=277 Identities=14% Similarity=0.159 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccc-h--h-hH-------------------HH-------------
Q 017470 23 VVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKF-I--S-EL-------------------VQ------------- 66 (371)
Q Consensus 23 lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~-i--~-~~-------------------~e------------- 66 (371)
.+++.+.....+++|+|+|..++++++|+++||...+. + + +. .+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~ 84 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAF 84 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 44455566678899999999999999999999753321 1 1 10 00
Q ss_pred ----------------HcCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017470 67 ----------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLG 130 (371)
Q Consensus 67 ----------------llG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~ 130 (371)
..|+++..++++|+++++|||+++.++++|.+ .+++..+++.+++.+||..+++++.+.....
T Consensus 85 ~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alvlf~~~~~~~ 163 (525)
T TIGR00831 85 LLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALVVFAIAVAVA 163 (525)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 45789999999999999999999999999976 5778889999999999999999887765444
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Q 017470 131 GNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFM 210 (371)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~ 210 (371)
.+++..+........+....+.++++..++ ++..++.++. .+++.....++++..+..+.++|.+|.|+++++|+
T Consensus 164 ~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g-~~~~~l~~~~----~~~~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv~ 238 (525)
T TIGR00831 164 LGKGVFDPLNAALDFAVVCVGGIAAGLAVG-YLAYRLLRAK----IDDPLVEIALTILAPFAGFLLAERFHFSGVIAVVA 238 (525)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh----ccccHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 322211111111111111122223333333 3444444332 22344455667888888999999999999999999
Q ss_pred HHHhccCcch----hHHHHHhhhcH----HHHHhHHHHHHhccccchhhhhHHH------H--HHH-------HHHHHHH
Q 017470 211 AGVMISTTDF----AKHTLDQVEPI----RNLFAALFLSSIGMLIHVHFLWNHV------D--ILL-------ASVILVI 267 (371)
Q Consensus 211 aGl~~~~~~~----~~~~~~~l~~i----~~~f~plFF~~~G~~l~l~~l~~~~------~--~~~-------~~~~~~~ 267 (371)
+|+.+++... .++..++.+.+ ..++.+++|+.+|++++.. +.+.+ . ... .+.....
T Consensus 239 aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 317 (525)
T TIGR00831 239 AGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGT-IFSAWKEILVAPAAVILALFTNAFVIYPVMT 317 (525)
T ss_pred HHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999998522 12223333333 4588999999999998642 11111 0 011 1111233
Q ss_pred HHHHHHHHHHH--HH-----hCCChHHHHHHHHHhhhHHHHHHHHHH
Q 017470 268 IVKTAVGTIVT--KL-----FGYSMRTSFLVGVSLAQIGEFAFVLLS 307 (371)
Q Consensus 268 ~~K~~~~~~~~--~~-----~~~~~~~~~~~g~~l~~~g~~~li~a~ 307 (371)
..|++..+... +. .+.++|+...++| .+.||.+++.++.
T Consensus 318 ~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al 363 (525)
T TIGR00831 318 YVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALAL 363 (525)
T ss_pred HHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHH
Confidence 45654433221 11 2467899999999 6999999998875
No 14
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.2e-20 Score=186.24 Aligned_cols=291 Identities=17% Similarity=0.189 Sum_probs=216.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhh-------H-----------H--------H----
Q 017470 17 LISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISE-------L-----------V--------Q---- 66 (371)
Q Consensus 17 ~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~-------~-----------~--------e---- 66 (371)
.+.+..+++..+...+.+.+|++.|.++.+++.|++.||.+++..+. . . +
T Consensus 7 ~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~ 86 (429)
T COG0025 7 LLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRV 86 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHh
Confidence 45677888899999999999999999999999999999887665431 0 0 0
Q ss_pred ------------------------Hc--CCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Q 017470 67 ------------------------LC--GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVG 120 (371)
Q Consensus 67 ------------------------ll--G~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~i 120 (371)
.+ ++++..++++|+++++|||..+.+++++.+ ...+...++.+++.+||..++
T Consensus 87 ~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~gi 165 (429)
T COG0025 87 WRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGVGI 165 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHHHH
Confidence 33 678889999999999999999999999976 688999999999999999999
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHh
Q 017470 121 LLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKL 200 (371)
Q Consensus 121 i~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~ 200 (371)
+.+.+......+++..+........+....+.+.++.+++ ++..|+.++.++++..++.......+...+..+.++|.+
T Consensus 166 v~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG-~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~~l 244 (429)
T COG0025 166 VLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLG-YLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAEAL 244 (429)
T ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 9887765444432221111122222222233334444544 466777777776432344555677888899999999999
Q ss_pred CchHHHHHHHHHHhccCc---c-hhHHHHHhhhcHH----HHHhHHHHHHhccccchhhhhHH-HHHHHHHHHHHHHHHH
Q 017470 201 GLSLELGSFMAGVMISTT---D-FAKHTLDQVEPIR----NLFAALFLSSIGMLIHVHFLWNH-VDILLASVILVIIVKT 271 (371)
Q Consensus 201 g~s~~lgaf~aGl~~~~~---~-~~~~~~~~l~~i~----~~f~plFF~~~G~~l~l~~l~~~-~~~~~~~~~~~~~~K~ 271 (371)
|.|++++...+|+..++. + ...+.+++.+.++ .++.-..|+..|++++....... +..++......+++|+
T Consensus 245 ~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~R~ 324 (429)
T COG0025 245 GVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARP 324 (429)
T ss_pred CcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999988521 1 1112233334443 48889999999999999887765 3344556667889999
Q ss_pred HHHHHHHHHh------CCChHHHHHHHHHhhhHHHHHHHHHHHHh
Q 017470 272 AVGTIVTKLF------GYSMRTSFLVGVSLAQIGEFAFVLLSRAS 310 (371)
Q Consensus 272 ~~~~~~~~~~------~~~~~~~~~~g~~l~~~g~~~li~a~~a~ 310 (371)
+.++...+.. ..+++|+.++++ -++||.+++..+....
T Consensus 325 ~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p 368 (429)
T COG0025 325 LWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIP 368 (429)
T ss_pred HHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHch
Confidence 9999998874 378999999999 6999999999887644
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.82 E-value=1.1e-17 Score=171.59 Aligned_cols=266 Identities=13% Similarity=0.142 Sum_probs=170.8
Q ss_pred CCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCchh--hH-HHHHH
Q 017470 69 GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGN-SGLLQ--GM-VSMGK 144 (371)
Q Consensus 69 G~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~-~~~~~--~~-~~~~~ 144 (371)
++++..++++|+++|+|||..+.++++|.+ .+.+.-.++.+++.+||..+++++.+...+... .+... .+ .....
T Consensus 128 ~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~ 206 (559)
T TIGR00840 128 DIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCAS 206 (559)
T ss_pred CCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 458999999999999999999999999987 588899999999999999999988766544321 11110 01 11111
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCc---chh
Q 017470 145 LLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT---DFA 221 (371)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~---~~~ 221 (371)
.+...++.++++.++| ++..++.|+.+. .+......+++..++.+.++|.+|.|++++++++|+.+++. +..
T Consensus 207 f~~~~~GGiliG~v~G-~l~~~l~r~~~~----~~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s 281 (559)
T TIGR00840 207 FFVVTCGGLLVGVVFG-FLVAFITRFTHH----IRQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMS 281 (559)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCC
Confidence 1111122233344444 345555665532 22344556777888889999999999999999999999753 112
Q ss_pred HHHHH----hhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHH
Q 017470 222 KHTLD----QVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL------FGYSMRTSFLV 291 (371)
Q Consensus 222 ~~~~~----~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~------~~~~~~~~~~~ 291 (371)
++..+ -.+.+..+...+.|+.+|+++....-...+..++..++..+++|+++++..... .+.++||...+
T Consensus 282 ~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il 361 (559)
T TIGR00840 282 RRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVI 361 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhhe
Confidence 22222 233334578889999999976322111123233334445678899888776543 35789999999
Q ss_pred HHHhhhHHHHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHHHHH----hHHHHhhh
Q 017470 292 GVSLAQIGEFAFVLLSRASNLHLVE-GKMYLLLLGTTALSLVT----TPLLFKLI 341 (371)
Q Consensus 292 g~~l~~~g~~~li~a~~a~~~g~i~-~~~~~~lv~~vils~l~----~p~~~~~~ 341 (371)
++ .++||.+++.++...-+.+.-. +.+.+....++++|.++ .|.+.++.
T Consensus 362 ~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L 415 (559)
T TIGR00840 362 FY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVL 415 (559)
T ss_pred ee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHhhHHHHHHHh
Confidence 99 6899999998886543333322 33334444455555554 34444443
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.59 E-value=2.1e-12 Score=126.80 Aligned_cols=235 Identities=16% Similarity=0.168 Sum_probs=154.8
Q ss_pred HHhhcHHHHHHHHhhcccc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 017470 82 LSMSSTAVVVKFLVEQNSN-NALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILS 160 (371)
Q Consensus 82 ls~TS~~vv~~il~e~~~~-~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
-.+||.+....++.+.|.. .++.+...++.+++||+.+++++++.- +++ . .+.. .......+ ++.+
T Consensus 132 p~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~--i-~~~~---L~~a~~~~-~~l~--- 198 (423)
T PRK14853 132 PTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSE--L-NLEA---LLLALVPL-ALFW--- 198 (423)
T ss_pred hhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCC--C-CHHH---HHHHHHHH-HHHH---
Confidence 3679999999999998864 778888999999999999988877642 222 1 1222 21111111 1111
Q ss_pred HhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcc------------hhHHHHHhh
Q 017470 161 WSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD------------FAKHTLDQV 228 (371)
Q Consensus 161 ~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~------------~~~~~~~~l 228 (371)
+ .++. +.++......+ .+...+..+..|+|+.+|+|++|+++|..+ ..++++|++
T Consensus 199 --~----l~~~-----~V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L 265 (423)
T PRK14853 199 --L----LVQK-----RVRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRL 265 (423)
T ss_pred --H----HHHc-----CCchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHH
Confidence 1 1111 22333333333 335566889999999999999999998521 136788899
Q ss_pred hcHH-HHHhHHH-HHHhccccch-hhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH----------hCCChHHHHHHHH
Q 017470 229 EPIR-NLFAALF-LSSIGMLIHV-HFLWNHV--DILLASVILVIIVKTAVGTIVTKL----------FGYSMRTSFLVGV 293 (371)
Q Consensus 229 ~~i~-~~f~plF-F~~~G~~l~l-~~l~~~~--~~~~~~~~~~~~~K~~~~~~~~~~----------~~~~~~~~~~~g~ 293 (371)
++.. .++.|+| |..+|.++|. +.+.+.. .....+.+..+++|+++.+..++. .+.+|++-.-+|+
T Consensus 266 ~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~ 345 (423)
T PRK14853 266 RPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL 345 (423)
T ss_pred HHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH
Confidence 9886 6999999 9999999986 4342221 133455666789999988776653 2466777777776
Q ss_pred HhhhHH-HHHHHHHHHHhh-CCCCchHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 017470 294 SLAQIG-EFAFVLLSRASN-LHLVEGKMYLLLLGTTALSLVTTPLLFKLIPN 343 (371)
Q Consensus 294 ~l~~~g-~~~li~a~~a~~-~g~i~~~~~~~lv~~vils~l~~p~~~~~~~~ 343 (371)
+...| ++++-++.+|++ .+...++.--.+...++++.+++-.+.|...+
T Consensus 346 -L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~~~ 396 (423)
T PRK14853 346 -LAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLRNR 396 (423)
T ss_pred -HHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77788 788999999984 22122222233446677777777777776543
No 17
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.53 E-value=2e-12 Score=129.33 Aligned_cols=320 Identities=13% Similarity=0.136 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHhCcCC------ccc-----------------hhhH-HH----
Q 017470 18 ISDLVVVIVSAAIGGIIFSCLG---QPVIVGYLLAGSIIGPGG------LKF-----------------ISEL-VQ---- 66 (371)
Q Consensus 18 l~~~~lil~~a~~~~~l~~rl~---~P~ivg~il~GiilGp~~------l~~-----------------i~~~-~e---- 66 (371)
+.....+++++.++++++++-| +|..+.-++.|+++|-.. .+. ++++ .|
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~ 116 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYS 116 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcccce
Confidence 3455677888999999999988 899999999999998421 111 0000 00
Q ss_pred ----------------------------------------HcCCchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHH
Q 017470 67 ----------------------------------------LCGAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQ 106 (371)
Q Consensus 67 ----------------------------------------llG~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~ 106 (371)
..++++.+++.+|+++|+|+|..++.+++|.+ .+.+.=.
T Consensus 117 l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-vd~~Ly~ 195 (575)
T KOG1965|consen 117 LKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-VDPKLYT 195 (575)
T ss_pred echhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-CCcceee
Confidence 22368899999999999999999999999997 4666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHH
Q 017470 107 VTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLS-IYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLA 185 (371)
Q Consensus 107 ~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~ 185 (371)
++-+++++||..+++++..+......+.+..........++... +...++...| .+.-.+.|.+.-++.+..| ...
T Consensus 196 LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~G-lisA~~lK~~~l~~~~~lE--~al 272 (575)
T KOG1965|consen 196 LVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIG-LISALVLKFLYLRRTPSLE--SAL 272 (575)
T ss_pred eeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcHHH--HHH
Confidence 88899999999999998877655443221111111222222221 1122222222 1223334555432234444 456
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcch------hHHH-HHhhhcHHHHHhHHHHHHhcc-ccchhhhhHH-H
Q 017470 186 AVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDF------AKHT-LDQVEPIRNLFAALFLSSIGM-LIHVHFLWNH-V 256 (371)
Q Consensus 186 ~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~------~~~~-~~~l~~i~~~f~plFF~~~G~-~l~l~~l~~~-~ 256 (371)
++......+.+||++|+++++..++-|+.++...+ .+.- .+..+.+.-+..-+-|.++|+ .+|....... .
T Consensus 273 ~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~~~~ 352 (575)
T KOG1965|consen 273 MLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVYKSL 352 (575)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceeeech
Confidence 77888889999999999999999999999997421 1111 122222223445555999995 3444443222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC----------ChHHHHHHHHHhhhHHHHHHHHHHHHh-hCC-CCchHHHHHHH
Q 017470 257 DILLASVILVIIVKTAVGTIVTKLFGY----------SMRTSFLVGVSLAQIGEFAFVLLSRAS-NLH-LVEGKMYLLLL 324 (371)
Q Consensus 257 ~~~~~~~~~~~~~K~~~~~~~~~~~~~----------~~~~~~~~g~~l~~~g~~~li~a~~a~-~~g-~i~~~~~~~lv 324 (371)
..+....++++++|..-.+....+.+. +.++-..+.|.=.-||.+++.++.--. +.+ --++-+++.-+
T Consensus 353 ~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i~tttl 432 (575)
T KOG1965|consen 353 QFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTIFTTTL 432 (575)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEEEEeee
Confidence 234445556778888777666554332 333345556544479988888775311 111 12344455545
Q ss_pred HHHHHHHHH----hHHHHhhh
Q 017470 325 GTTALSLVT----TPLLFKLI 341 (371)
Q Consensus 325 ~~vils~l~----~p~~~~~~ 341 (371)
.++++|+++ +-.+.+++
T Consensus 433 ~vVlfT~lv~Gg~T~pml~~L 453 (575)
T KOG1965|consen 433 VVVLFTVLVFGGSTKPMLSYL 453 (575)
T ss_pred eeeeeeeeeeCCccHHHHHHh
Confidence 555566543 44455555
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.43 E-value=9.2e-12 Score=116.23 Aligned_cols=238 Identities=14% Similarity=0.140 Sum_probs=154.9
Q ss_pred CCchHHHHHHHHHHHhhcHHHHHHHHhhccccc---ChhHHHHHHHHHHHHHHHHHHHHHHH--HhhcCC-CchhhHHHH
Q 017470 69 GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNN---ALHGQVTIGTLILQDCAVGLLFALLP--VLGGNS-GLLQGMVSM 142 (371)
Q Consensus 69 G~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~---~~~g~~~l~~avi~Di~~ii~l~i~~--~~~~~~-~~~~~~~~~ 142 (371)
+++...++.++.++++|+|.....+..+.+..+ .+.-.+..+++..||..+++++-+.. ...... ....+|. .
T Consensus 127 ~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv-~ 205 (467)
T KOG4505|consen 127 NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWV-C 205 (467)
T ss_pred cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCcee-h
Confidence 457789999999999999988888887655433 34556678999999998888653332 222211 0011221 0
Q ss_pred HHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCc-ch
Q 017470 143 GKLLLVLSIY-LTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-DF 220 (371)
Q Consensus 143 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~-~~ 220 (371)
..++--..| ..++.++| ++.+..+|+.++.+--++|.+...-+++.+.+.++.+.+|.+..+-.|.||..++-. .+
T Consensus 206 -~~iLyec~fg~llG~vIG-~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wF 283 (467)
T KOG4505|consen 206 -DNILYECFFGCLLGCVIG-YLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWF 283 (467)
T ss_pred -hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHh
Confidence 111111112 11222222 455555666665445678988888888899999999999999999999999999954 34
Q ss_pred hHHHHH-hhhcHHH-HHhHHHHHHhccccchhhhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHH
Q 017470 221 AKHTLD-QVEPIRN-LFAALFLSSIGMLIHVHFLWNH------VDILLASVILVIIVKTAVGTIVTKLF--GYSMRTSFL 290 (371)
Q Consensus 221 ~~~~~~-~l~~i~~-~f~plFF~~~G~~l~l~~l~~~------~~~~~~~~~~~~~~K~~~~~~~~~~~--~~~~~~~~~ 290 (371)
.++..+ ++..+.| ++.-.||++.|..+++++++.. |..++..+.+.+.=|.-.+++.--.. =.+|||+++
T Consensus 284 sk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALF 363 (467)
T KOG4505|consen 284 SKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALF 363 (467)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHH
Confidence 444443 6666776 7788899999999999887542 32333333233333333333321111 146999999
Q ss_pred HHHHhhhHHHHHHHHHHHHh
Q 017470 291 VGVSLAQIGEFAFVLLSRAS 310 (371)
Q Consensus 291 ~g~~l~~~g~~~li~a~~a~ 310 (371)
+|. .+|.|.-++..+.++.
T Consensus 364 vGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 364 VGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred hcc-CCCccHHHHHHHHHHH
Confidence 999 8999987777777765
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.23 E-value=3e-09 Score=102.84 Aligned_cols=202 Identities=20% Similarity=0.200 Sum_probs=125.3
Q ss_pred HhhcHHHHHHHHhhccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 83 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 161 (371)
Q Consensus 83 s~TS~~vv~~il~e~~~-~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+||.+-..-++.=.|. .........++-+++||+.++++.++. .+++ . +.......... +.+..
T Consensus 123 ~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~F---Yt~~--i----~~~~L~~a~~~-~~~l~---- 188 (373)
T TIGR00773 123 AATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALF---YTND--L----SMAALLVAAVA-IAVLA---- 188 (373)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeee---cCCC--C----CHHHHHHHHHH-HHHHH----
Confidence 35666666666655553 233345667799999999887776553 2222 1 11122221111 11111
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcc-h----hHHHHHhhhcHH-HHH
Q 017470 162 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD-F----AKHTLDQVEPIR-NLF 235 (371)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~-~----~~~~~~~l~~i~-~~f 235 (371)
+.+|. +.++......+.++ ..+. ....|+|+.+|++++|+.+|+.+ . .+++++.+++.. .++
T Consensus 189 -----~~~~~-----~v~~~~~y~~lgvl-lW~~-~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~li 256 (373)
T TIGR00773 189 -----VLNRC-----GVRRLGPYMLVGVI-LWFA-VLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLI 256 (373)
T ss_pred -----HHHHc-----CCchhhHHHHHHHH-HHHH-HHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHH
Confidence 12222 23443333333322 2222 37999999999999999999852 1 355666777766 578
Q ss_pred hHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH----------hCCChHHHHHHHHHhhhHH-HHH
Q 017470 236 AALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKL----------FGYSMRTSFLVGVSLAQIG-EFA 302 (371)
Q Consensus 236 ~plF-F~~~G~~l~l~~l~~~-~~~~~~~~~~~~~~K~~~~~~~~~~----------~~~~~~~~~~~g~~l~~~g-~~~ 302 (371)
.|+| |+..|.++|...+... ......+++..+++|+++++..++. .|.+|++-.-+|+ +...| +++
T Consensus 257 lPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~-L~GIGFTmS 335 (373)
T TIGR00773 257 LPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV-LCGIGFTMS 335 (373)
T ss_pred HHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 8999 9999999987544322 1223455666789999998887664 2466777777776 67777 788
Q ss_pred HHHHHHHhh
Q 017470 303 FVLLSRASN 311 (371)
Q Consensus 303 li~a~~a~~ 311 (371)
+-++.++++
T Consensus 336 lfI~~LAf~ 344 (373)
T TIGR00773 336 IFIASLAFG 344 (373)
T ss_pred HHHHHHhcC
Confidence 889999985
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.79 E-value=1.1e-06 Score=86.59 Aligned_cols=233 Identities=15% Similarity=0.165 Sum_probs=137.7
Q ss_pred HhhcHHHHHHHHhhccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 83 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 161 (371)
Q Consensus 83 s~TS~~vv~~il~e~~~-~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+||++...-++.=.|. .........++-+++||+.+++++++. .+++ . +..........+ ++..
T Consensus 138 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF---Yt~~--i----~~~~L~~a~~~~-~~l~---- 203 (438)
T PRK14856 138 MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALF---YTTN--L----KFAWLLGALGVV-LVLA---- 203 (438)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeee---cCCC--C----cHHHHHHHHHHH-HHHH----
Confidence 45777777777765553 233444567799999999888776553 2222 1 112222221111 1111
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcchh--------------------
Q 017470 162 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFA-------------------- 221 (371)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~~-------------------- 221 (371)
+.++. +.+.......+.++ .=+.-...|+|+.++..+.|+++|..+..
T Consensus 204 -----~ln~~-----~v~~~~~Y~~~G~~--lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK14856 204 -----VLNRL-----NVRSLIPYLLLGVL--LWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSG 271 (438)
T ss_pred -----HHHHc-----CCccccHHHHHHHH--HHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccc
Confidence 12222 12222222222222 22345678999999999999999964211
Q ss_pred -------------------------HHHHHhhhcHHH-HHhHHH-HHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017470 222 -------------------------KHTLDQVEPIRN-LFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVG 274 (371)
Q Consensus 222 -------------------------~~~~~~l~~i~~-~f~plF-F~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~ 274 (371)
+++++.+++... +.+|+| |...|..++.+...........+.+..++||++|.
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lGI 351 (438)
T PRK14856 272 ALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLGI 351 (438)
T ss_pred cccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHHH
Confidence 234445555554 778999 88999999865322111223345555678888888
Q ss_pred HHHHHH----------hCCChHHHHHHHHHhhhHH-HHHHHHHHHHhhC--CCCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 275 TIVTKL----------FGYSMRTSFLVGVSLAQIG-EFAFVLLSRASNL--HLVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 275 ~~~~~~----------~~~~~~~~~~~g~~l~~~g-~~~li~a~~a~~~--g~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
+..++. .|.+|++-.-+|. +...| ++++-++.+|++. +..-++.--.+...++++.+++-.+.|+.
T Consensus 352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L~~~ 430 (438)
T PRK14856 352 FLITFISEKLKITARPKGISWWHILGAGL-LAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYLFAL 430 (438)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 776653 2466777667776 77788 7888899999843 32223333344567777888888888865
Q ss_pred h
Q 017470 342 P 342 (371)
Q Consensus 342 ~ 342 (371)
+
T Consensus 431 ~ 431 (438)
T PRK14856 431 D 431 (438)
T ss_pred c
Confidence 4
No 21
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.66 E-value=5.1e-06 Score=80.76 Aligned_cols=232 Identities=18% Similarity=0.134 Sum_probs=134.0
Q ss_pred HhhcHHHHHHHHhhccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 83 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 161 (371)
Q Consensus 83 s~TS~~vv~~il~e~~~-~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+||.+...-++.=.|. .....-...++-+++||+.++++.++. .+++ . +..........+ ++..
T Consensus 130 mATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~F---Yt~~--i----~~~~L~~a~~~~-~~l~---- 195 (389)
T PRK09560 130 AATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALF---YTSD--L----SLPALALAAIAI-AVLF---- 195 (389)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeee---cCCC--C----CHHHHHHHHHHH-HHHH----
Confidence 35777777777765553 233335566799999999888776553 2222 1 111222211111 1111
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcc--h-----hHHHHHhhhcHHH-
Q 017470 162 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD--F-----AKHTLDQVEPIRN- 233 (371)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~--~-----~~~~~~~l~~i~~- 233 (371)
+.+|. +.++......+.+ ..=+.-...|+|+.++..+.|+.+|..+ . .+++++.+++...
T Consensus 196 -----~ln~~-----~v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~ 263 (389)
T PRK09560 196 -----LLNRL-----GVTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAF 263 (389)
T ss_pred -----HHHHc-----CCccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhh
Confidence 11222 2233333323332 2233456789999999999999999742 1 2567788888776
Q ss_pred HHhHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH----------hCCChHHHHHHHHHhhhHH-H
Q 017470 234 LFAALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKL----------FGYSMRTSFLVGVSLAQIG-E 300 (371)
Q Consensus 234 ~f~plF-F~~~G~~l~l~~l~~~-~~~~~~~~~~~~~~K~~~~~~~~~~----------~~~~~~~~~~~g~~l~~~g-~ 300 (371)
+.+|+| |...|..++-..+... ........+..++||+++.+..++. .|.+|++-.-+|. +...| +
T Consensus 264 ~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFT 342 (389)
T PRK09560 264 AILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV-LCGIGFT 342 (389)
T ss_pred hhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHH
Confidence 559999 8899999843223221 1123345555678898888776653 2456777667776 67777 7
Q ss_pred HHHHHHHHHhh-CCCCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 301 FAFVLLSRASN-LHLVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 301 ~~li~a~~a~~-~g~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
+++-++.+|++ .+...++.--.+...++++.+++-...|..
T Consensus 343 mSLFIa~LAF~~~~~~~~~aKigIL~~S~~aai~g~~~l~~~ 384 (389)
T PRK09560 343 MSLFIGSLAFGASEELLTEARLGILLGSLLSAILGYLLLRLT 384 (389)
T ss_pred HHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88889999984 211112222223344556666666555543
No 22
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.63 E-value=7.7e-06 Score=79.44 Aligned_cols=232 Identities=19% Similarity=0.146 Sum_probs=133.6
Q ss_pred HhhcHHHHHHHHhhccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 83 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 161 (371)
Q Consensus 83 s~TS~~vv~~il~e~~~-~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+||.+...-++.=.|. .........++-+++||+.++++.++. .+++ . .+ .........+ .+..
T Consensus 130 ~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF---Yt~~--i-~~---~~L~~a~~~~-~~l~---- 195 (388)
T PRK09561 130 AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALF---YTSD--L-SM---VSLGVAAVAI-AVLA---- 195 (388)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeee---cCCC--c-cH---HHHHHHHHHH-HHHH----
Confidence 35777777777655553 233345566799999999888776553 2222 1 11 1222211111 1111
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcch-----hHHHHHhhhcHHH-HH
Q 017470 162 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDF-----AKHTLDQVEPIRN-LF 235 (371)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~-----~~~~~~~l~~i~~-~f 235 (371)
+.++. +.++......+.++ .=+.-...|+|+.++..+.|+.+|..+. .+++++++++... +.
T Consensus 196 -----~ln~~-----~v~~~~~Y~~~G~~--lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~I 263 (388)
T PRK09561 196 -----VLNLC-----GVRRTSVYILVGVV--LWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLI 263 (388)
T ss_pred -----HHHHc-----CCccchHHHHHHHH--HHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhhee
Confidence 12222 22333333233322 2334577899999999999999997421 3567888888775 57
Q ss_pred hHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH----------hCCChHHHHHHHHHhhhHH-HHH
Q 017470 236 AALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKL----------FGYSMRTSFLVGVSLAQIG-EFA 302 (371)
Q Consensus 236 ~plF-F~~~G~~l~l~~l~~~-~~~~~~~~~~~~~~K~~~~~~~~~~----------~~~~~~~~~~~g~~l~~~g-~~~ 302 (371)
+|+| |...|..++-..+... ........+..++||+++.+..++. .|.+|++-.-+|. +...| +++
T Consensus 264 lPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmS 342 (388)
T PRK09561 264 LPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV-LCGIGFTMS 342 (388)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 8998 8899998832222211 1123345555678898888776653 2456777777776 67777 688
Q ss_pred HHHHHHHhhC--CCCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 303 FVLLSRASNL--HLVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 303 li~a~~a~~~--g~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
+-++.++++. +...++.--.+...++++.+++-.+.|..
T Consensus 343 LFIa~LAF~~~~~~~~~~aKigIL~~S~~sai~g~~~l~~~ 383 (388)
T PRK09561 343 IFIASLAFGGVDPELINYAKLGILIGSLLSAVIGYSWLRKV 383 (388)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999852 11111222223344556666666665543
No 23
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.62 E-value=1.3e-05 Score=77.74 Aligned_cols=233 Identities=16% Similarity=0.170 Sum_probs=133.8
Q ss_pred HhhcHHHHHHHHhhccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 83 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 161 (371)
Q Consensus 83 s~TS~~vv~~il~e~~~-~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+||.+...-++.=.|. ......-..++-+++||+.++++.++. .+++ . .+. ...... ..+...
T Consensus 126 ~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlF---Yt~~--i-~~~---~L~~A~---~~~~~l--- 190 (383)
T PRK14854 126 SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIF---YTKS--L-SLL---SLSLGT---LFILAM--- 190 (383)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeee---cCCC--c-cHH---HHHHHH---HHHHHH---
Confidence 35777777766665553 233344445688999999887766553 2222 1 111 121111 111111
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcch-----hHHHHHhhhcHH-HHH
Q 017470 162 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDF-----AKHTLDQVEPIR-NLF 235 (371)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~-----~~~~~~~l~~i~-~~f 235 (371)
.. .+|.. +.+.......+. +..=+.-...|+|+.++..+.|+.+|..+. .+++++.+++.. .+.
T Consensus 191 ~~----~nr~~----~v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~I 260 (383)
T PRK14854 191 II----CNRIF----KINRSSVYVVLG--FFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFI 260 (383)
T ss_pred HH----HHHhc----CCceehHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhh
Confidence 11 12211 122222222222 223334577899999999999999997421 356778888876 477
Q ss_pred hHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHH----------hCCChHHHHHHHHHhhhHH-HHH
Q 017470 236 AALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKL----------FGYSMRTSFLVGVSLAQIG-EFA 302 (371)
Q Consensus 236 ~plF-F~~~G~~l~l~~l~~~-~~~~~~~~~~~~~~K~~~~~~~~~~----------~~~~~~~~~~~g~~l~~~g-~~~ 302 (371)
+|+| |...|..++-...... ......+.+..++||+++.+..++. .|.+|++-.-+|+ +...| +++
T Consensus 261 lPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmS 339 (383)
T PRK14854 261 LPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL-LCGIGFTMS 339 (383)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 8999 8899998843222211 1123345555678888888776653 2456777777776 77778 788
Q ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 303 FVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 303 li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
+-++.++++.+...++.--.+...++++.+.+-.+.|..
T Consensus 340 LFIa~LAF~~~~~~~~aKigIL~gS~~aai~G~~~l~~~ 378 (383)
T PRK14854 340 LFIGVLAFNDTHLLNAIKIGVVVGSVLSGFFGYIVLRFI 378 (383)
T ss_pred HHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999985422222222233345666666666666544
No 24
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.58 E-value=1.3e-05 Score=78.80 Aligned_cols=227 Identities=16% Similarity=0.095 Sum_probs=130.0
Q ss_pred HhhcHHHHHHHHhhcccc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 83 SMSSTAVVVKFLVEQNSN-NALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 161 (371)
Q Consensus 83 s~TS~~vv~~il~e~~~~-~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+||.+...-++.=.|.. ........++-+++||+.+++++++. .+++ . .+ .......+.+ ++..
T Consensus 133 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlF---Yt~~--i-~~---~~L~~a~~~~-~~l~---- 198 (423)
T PRK14855 133 MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALF---YTSG--L-NL---LALLLAALTW-ALAL---- 198 (423)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEee---cCCC--C-CH---HHHHHHHHHH-HHHH----
Confidence 468888887777766632 22344567799999999887766543 2222 1 11 1222211111 1111
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCc-c-h-------------------
Q 017470 162 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-D-F------------------- 220 (371)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~-~-~------------------- 220 (371)
+.++. +.+.......+.+ ..=+.-...|+|+.++..+.|+.+|.. + .
T Consensus 199 -----~ln~~-----~v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (423)
T PRK14855 199 -----LAGRL-----GVTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVV 266 (423)
T ss_pred -----HHHHc-----CCccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhh
Confidence 12222 2233222222222 222345678999999999999999864 1 1
Q ss_pred -----------------hHHHHHhhhcHHH-HHhHHH-HHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 017470 221 -----------------AKHTLDQVEPIRN-LFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL- 280 (371)
Q Consensus 221 -----------------~~~~~~~l~~i~~-~f~plF-F~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~- 280 (371)
.+++++.+++... +.+|+| |...|..++-+...+ ......+..++||++|.+..++.
T Consensus 267 ~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~~p---v~lGI~~GLvvGK~lGI~~~s~la 343 (423)
T PRK14855 267 GARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGLGT---VSLGVFLGLLLGKPLGVVGGAWLA 343 (423)
T ss_pred hHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCCCc---HHHHHHHHHHhcchHHHHHHHHHH
Confidence 1235555566554 578999 889999994333221 22344445668888887776653
Q ss_pred ---------hCCChHHHHHHHHHhhhHH-HHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHh
Q 017470 281 ---------FGYSMRTSFLVGVSLAQIG-EFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFK 339 (371)
Q Consensus 281 ---------~~~~~~~~~~~g~~l~~~g-~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~ 339 (371)
.|.+|++-.-+|+ +...| ++++-++.+|++.+..-++.--.+...++++.+++-...|
T Consensus 344 vkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L~ 411 (423)
T PRK14855 344 VRLGLASLPRRVNWLHMLGAGL-LAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWLW 411 (423)
T ss_pred HHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2466777667776 67778 7888899999853322222222233455555555555554
No 25
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.29 E-value=4.2e-06 Score=81.14 Aligned_cols=205 Identities=19% Similarity=0.202 Sum_probs=108.7
Q ss_pred HhhcHHHHHHHHhhccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 83 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 161 (371)
Q Consensus 83 s~TS~~vv~~il~e~~~-~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+||++...-++.=.|. .........++-+++||+.++++.++. .+++ . +.......... +.+..
T Consensus 126 ~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~F---Yt~~--i----~~~~L~~a~~~-~~~l~---- 191 (378)
T PF06965_consen 126 MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALF---YTDG--I----SLLWLLLAAAA-LLLLF---- 191 (378)
T ss_dssp S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHH---S-----------HHHHHHHHHH-HHHHH----
T ss_pred ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeee---eCCC--C----CHHHHHHHHHH-HHHHH----
Confidence 35777777777765553 233444667899999999988877653 2221 1 11122221111 11111
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcchh---------HHHHHhhhcHH
Q 017470 162 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFA---------KHTLDQVEPIR 232 (371)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~~---------~~~~~~l~~i~ 232 (371)
..+|. +.++......+.+ ..=+.-...|+|+.++..+.|+.+|..+.. +++++.+++..
T Consensus 192 -----~l~r~-----~v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v 259 (378)
T PF06965_consen 192 -----VLNRL-----GVRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWV 259 (378)
T ss_dssp -----HHHHT-----T---THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHH
T ss_pred -----HHHHC-----CCceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhh
Confidence 12221 1222222222222 222334678999999999999999986433 36777777776
Q ss_pred H-HHhHHH-HHHhccccchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHH----------hCCChHHHHHHHHHhhhHH
Q 017470 233 N-LFAALF-LSSIGMLIHVHFLWNHVD-ILLASVILVIIVKTAVGTIVTKL----------FGYSMRTSFLVGVSLAQIG 299 (371)
Q Consensus 233 ~-~f~plF-F~~~G~~l~l~~l~~~~~-~~~~~~~~~~~~K~~~~~~~~~~----------~~~~~~~~~~~g~~l~~~g 299 (371)
+ +.+|+| |...|.+++-..+..... ......+..++||+++.+..++. .|.++++-.-+|. +...|
T Consensus 260 ~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~-LaGIG 338 (378)
T PF06965_consen 260 AFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL-LAGIG 338 (378)
T ss_dssp HHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH-HTT--
T ss_pred hhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHH
Confidence 5 668999 889999998765432221 12344555678999888776543 2455666556666 67777
Q ss_pred -HHHHHHHHHHhhCCC
Q 017470 300 -EFAFVLLSRASNLHL 314 (371)
Q Consensus 300 -~~~li~a~~a~~~g~ 314 (371)
++++-++.+|++...
T Consensus 339 FTmSLFIa~LAF~~~~ 354 (378)
T PF06965_consen 339 FTMSLFIAGLAFDDPA 354 (378)
T ss_dssp HHHHHHHHHHHSTT-S
T ss_pred HHHHHHHHHHHcCChh
Confidence 788999999988743
No 26
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.25 E-value=0.00025 Score=66.85 Aligned_cols=230 Identities=17% Similarity=0.153 Sum_probs=131.7
Q ss_pred HhhcHHHHHHHHhhccc-ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 83 SMSSTAVVVKFLVEQNS-NNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLLVLSIYLTVTSILSW 161 (371)
Q Consensus 83 s~TS~~vv~~il~e~~~-~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (371)
.+|+.+...-++.-.|. ..+...-..++-+++||.-+++..++. ..++-+ +.. ... +++.+....
T Consensus 133 ~ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlF---Yt~~Ls---~~a---l~~---a~~~i~vL~-- 198 (390)
T COG3004 133 MATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALF---YTTDLS---MAA---LGI---AALAIAVLA-- 198 (390)
T ss_pred cHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhh---hcCCcc---HHH---HHH---HHHHHHHHH--
Confidence 45677666666665553 344555667899999999887776653 222211 111 111 111111111
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCc-ch----hHHHHHhhhcHH-HHH
Q 017470 162 SFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-DF----AKHTLDQVEPIR-NLF 235 (371)
Q Consensus 162 ~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~-~~----~~~~~~~l~~i~-~~f 235 (371)
.+.| .+ .+..........++- ..-...|+|..++..+.|+.+|-. +. -|++++.+++.. -+.
T Consensus 199 -~lN~----~~-----v~~l~~Y~~~gviLW--~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~I 266 (390)
T COG3004 199 -VLNR----LG-----VRRLSPYLLVGVILW--IAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFI 266 (390)
T ss_pred -HHHH----hC-----chhhhHHHHHHHHHH--HHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHH
Confidence 1222 11 111112222222221 224678999999999999999964 22 256777777765 477
Q ss_pred hHHH-HHHhccccc---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCChHHHHHHHHHhhhHH-H
Q 017470 236 AALF-LSSIGMLIH---VHFLWNHVDILLASVILVIIVKTAVGTIVTKL----------FGYSMRTSFLVGVSLAQIG-E 300 (371)
Q Consensus 236 ~plF-F~~~G~~l~---l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~----------~~~~~~~~~~~g~~l~~~g-~ 300 (371)
+|+| |...|.+++ .+.+.+. .-+.+.+..+++|.++.+..++. .|.+|++-..+++ +...| +
T Consensus 267 lPlFaFaNAGvsl~g~~~~~l~s~--l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~i-LcGIGFT 343 (390)
T COG3004 267 LPLFAFANAGVSLQGVSLSGLTSP--LTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSI-LCGIGFT 343 (390)
T ss_pred HHHHHHccCCcccccccccccccc--hHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHH-HHhhhHH
Confidence 8999 889999887 3333321 23345555678898888776653 2456776666666 66666 6
Q ss_pred HHHHHHHHHhhCC-CCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 301 FAFVLLSRASNLH-LVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 301 ~~li~a~~a~~~g-~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
+++-++.++++.. ..+...---+...+.+|.+.+-...|..
T Consensus 344 MSlFI~~LAf~~~~~~~~~~klgIL~gS~~Sai~G~~~L~~~ 385 (390)
T COG3004 344 MSLFIASLAFGSEDELQTAAKLGILVGSFISAILGYSYLRLL 385 (390)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7888888887552 2222222223455556666666666654
No 27
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.83 E-value=0.00052 Score=65.08 Aligned_cols=150 Identities=15% Similarity=0.094 Sum_probs=92.4
Q ss_pred HHHHHHHHHHH--hCchHHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHH
Q 017470 189 FCLLSAWCSDK--LGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILV 266 (371)
Q Consensus 189 ~~~~~~~ia~~--~g~s~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~ 266 (371)
+.++.+++++. ..+-+.+=+++.|++++|.+. +..+.+++=..+.+|++-+..|+++|++++.+.....+.+.+..
T Consensus 151 ~aLga~gLA~ip~~~lv~lilpILiGmilGNld~--~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~v 228 (312)
T PRK12460 151 LALGAAGLANIPIMALVAALLPLVLGMILGNLDP--DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLV 228 (312)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhccch--hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHH
Confidence 33445555554 234457778999999999532 33455555556799999999999999999876543333333333
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHH--HHhhhHHHHHHHHHHHHhhCCCCch--HHHHHHH-HHHHHHHHHhHHHHhhh
Q 017470 267 IIVKTAVGTIVTKLFGYSMRTSFLVG--VSLAQIGEFAFVLLSRASNLHLVEG--KMYLLLL-GTTALSLVTTPLLFKLI 341 (371)
Q Consensus 267 ~~~K~~~~~~~~~~~~~~~~~~~~~g--~~l~~~g~~~li~a~~a~~~g~i~~--~~~~~lv-~~vils~l~~p~~~~~~ 341 (371)
+..-....+...|..|.+++.+..+| .+-+--| .+.+.+. ...+.+ +..+..+ ..+++|.+++|++..|+
T Consensus 229 v~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcg-pAAVaAa----dP~~~~~~~~Ataqvaa~vivTail~P~~t~~~ 303 (312)
T PRK12460 229 TIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVAT-PLAIAAA----DPSLAPVAAAATAQVAASVIVTAILTPLLTSWV 303 (312)
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHH-HHHHHHh----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666688888888777766 3322222 1222221 222222 3333333 67778999999999998
Q ss_pred hhhh
Q 017470 342 PNVM 345 (371)
Q Consensus 342 ~~~~ 345 (371)
++.+
T Consensus 304 ~k~~ 307 (312)
T PRK12460 304 AKKE 307 (312)
T ss_pred HHHh
Confidence 7543
No 28
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=97.83 E-value=8.6e-06 Score=82.24 Aligned_cols=228 Identities=17% Similarity=0.219 Sum_probs=135.4
Q ss_pred HcC--CchHHHHHHHHHHHhhcHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCch------h
Q 017470 67 LCG--AKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNNALHGQVTIGTLILQDCAVGLLFALLPVLGGN-SGLL------Q 137 (371)
Q Consensus 67 llG--~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~-~~~~------~ 137 (371)
++| .+...-+++|...|+.+|..+..+.+|.+. |.-.=-++.+++.+||...+++.-....+..- +.+. .
T Consensus 156 lf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~ 234 (670)
T KOG1966|consen 156 LFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVL 234 (670)
T ss_pred hcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeec
Confidence 455 347789999999999999999999999974 44444566799999999888776544332211 1110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccC
Q 017470 138 GMVSMGKLLLVLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMIST 217 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~ 217 (371)
+..++.-+-+ +.++++.+.+ .+..-..|+.. ..+-...++.+......+..+|..++|++++-.+-|+.+.+
T Consensus 235 G~~sFfVVsl---GG~lvGivfa-fl~sl~tkft~----~vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~ 306 (670)
T KOG1966|consen 235 GVVSFFVVSL---GGALVGIVFA-FLASLVTKFTK----HVRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKK 306 (670)
T ss_pred ceeEEEEEec---CchhHHHHHH-HHHHHHHHhhc----ceeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111100000 0011111111 11222233332 23434456678888889999999999999999999999987
Q ss_pred c---chhHHHHHhhhc----HHHHHhHHHHHHhccccchhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHh------C
Q 017470 218 T---DFAKHTLDQVEP----IRNLFAALFLSSIGMLIHVHFLWNHVD--ILLASVILVIIVKTAVGTIVTKLF------G 282 (371)
Q Consensus 218 ~---~~~~~~~~~l~~----i~~~f~plFF~~~G~~l~l~~l~~~~~--~~~~~~~~~~~~K~~~~~~~~~~~------~ 282 (371)
. .-.++-....+. ....-.++-|.+.|.+.--. .+.|. .+.+-++...+.|.+++..-+++. +
T Consensus 307 Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k 384 (670)
T KOG1966|consen 307 YVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVK 384 (670)
T ss_pred HHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheee
Confidence 4 112222222222 23566777788899876322 23342 333445556677888876665543 4
Q ss_pred CChHHHHHHHHHhhhHHHHHHHHH
Q 017470 283 YSMRTSFLVGVSLAQIGEFAFVLL 306 (371)
Q Consensus 283 ~~~~~~~~~g~~l~~~g~~~li~a 306 (371)
++..|-..++.+ +-||.++..+.
T Consensus 385 ~~~~DQfimsyG-GLRGAiaF~LV 407 (670)
T KOG1966|consen 385 LEFVDQFIMSYG-GLRGAIAFGLV 407 (670)
T ss_pred ccccceeeeecC-CcchhhheeEE
Confidence 556666666653 66776555443
No 29
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=97.35 E-value=0.018 Score=54.12 Aligned_cols=109 Identities=22% Similarity=0.437 Sum_probs=74.4
Q ss_pred HHHHHHHHHhCchHHHHHHHHHHhccCcchh-HHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHH
Q 017470 191 LLSAWCSDKLGLSLELGSFMAGVMISTTDFA-KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIV 269 (371)
Q Consensus 191 ~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~~-~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~ 269 (371)
.....+++.+++++.++-.++|+++++.-.+ -+-.+.++.+.++-..++....|+++|++.+.++...........++.
T Consensus 5 ~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~ 84 (273)
T TIGR00932 5 VLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLV 84 (273)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999875211 011234566677778888889999999999877653332222222222
Q ss_pred H-HHHHHHHHHHhCCChHHHHHHHHHhhhHH
Q 017470 270 K-TAVGTIVTKLFGYSMRTSFLVGVSLAQIG 299 (371)
Q Consensus 270 K-~~~~~~~~~~~~~~~~~~~~~g~~l~~~g 299 (371)
- ...++......+.++.++..+|..+++-+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts 115 (273)
T TIGR00932 85 PGVLLGLLLGHLLGLALGAAVVIGIILALSS 115 (273)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH
Confidence 2 33344455667899999999998877654
No 30
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.01 E-value=0.058 Score=56.91 Aligned_cols=115 Identities=19% Similarity=0.298 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcchhH-HHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHH
Q 017470 185 AAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASV 263 (371)
Q Consensus 185 ~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~~~-~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~ 263 (371)
+.+........++..+|+++++|=.++|++++..-.+. .-.+.++.+.++-..++.+.+|+++|++.++.....+...-
T Consensus 12 ~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g 91 (621)
T PRK03562 12 IYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGG 91 (621)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 44555666778899999999999999999998641110 11244666778888888899999999999876532222211
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHH
Q 017470 264 ILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIG 299 (371)
Q Consensus 264 ~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g 299 (371)
..-++.-...++..+...|.++..++.+|..++.-+
T Consensus 92 ~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 92 ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 111122222333445667899999999888765544
No 31
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.059 Score=53.69 Aligned_cols=116 Identities=18% Similarity=0.243 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCc--chhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHH-HH
Q 017470 184 LAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDI-LL 260 (371)
Q Consensus 184 ~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~--~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~-~~ 260 (371)
...+..+.....+++.+|+++++|=.++|+++.+. ..-.+-.|.++-+.++=.-+....+|++.|++.+.+.... ..
T Consensus 12 ~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~ 91 (397)
T COG0475 12 LILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGL 91 (397)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhh
Confidence 44555566677899999999999999999999982 1112223444445555555557789999999999875333 22
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHhhhHH
Q 017470 261 ASVILVIIVKTAVGTIVTK-LFGYSMRTSFLVGVSLAQIG 299 (371)
Q Consensus 261 ~~~~~~~~~K~~~~~~~~~-~~~~~~~~~~~~g~~l~~~g 299 (371)
......+..-+..+..... ..+++++++..+|..+..-+
T Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS 131 (397)
T COG0475 92 GVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSS 131 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 2222222222222211111 57899999999988766554
No 32
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.93 E-value=0.063 Score=55.90 Aligned_cols=133 Identities=17% Similarity=0.287 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcchhH-HHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHH
Q 017470 186 AVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAK-HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVI 264 (371)
Q Consensus 186 ~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~~~-~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~ 264 (371)
.+..+..+..++..+++++++|=.++|+++++.-.+. +-.+.++.+.++-..++.+.+|+++|++.+...........+
T Consensus 14 ~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~ 93 (558)
T PRK10669 14 GLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAI 93 (558)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHH
Confidence 3455566778889999999999999999998752110 012345566777777778889999999988654322211111
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHH
Q 017470 265 LVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMY 320 (371)
Q Consensus 265 ~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~ 320 (371)
..++.-+..++......++++.+++.+|..++.-+ ..++ ...-.+.|..+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS-~~vv-~~~L~e~~~l~s~~G 147 (558)
T PRK10669 94 AQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAS-TVVL-LRALEERQLIDSQRG 147 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHHH-HHHHHhcCcccCcch
Confidence 11222233344445567899999999998766643 2333 333445666554333
No 33
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.77 E-value=0.017 Score=54.45 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhCchHHHH---HHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHH
Q 017470 189 FCLLSAWCSDKLGLSLELG---SFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVIL 265 (371)
Q Consensus 189 ~~~~~~~ia~~~g~s~~lg---af~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~ 265 (371)
+.++.+.+++ +....+++ .++.|+++.|.++ +++|.+.+-....+|+|-...|..+|++.+.+.....+.+-+.
T Consensus 156 i~LG~sGlA~-ip~~~lv~~ilPlliG~ilGNLD~--~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~ 232 (314)
T TIGR00793 156 VILGTAGIAS-FEPHVFVGAVLPFLVGFALGNLDP--ELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVS 232 (314)
T ss_pred HHHhhccCCC-CCHHHHHHHHHHHHHHHHHhcCCH--HHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHH
Confidence 3344444444 33344444 6889999999643 4556677777899999999999999998886542112222111
Q ss_pred HHHHHHHHHHHHHHHhC-CChHHHHHHHHHhh-hHHHHHHHHHHHHhhCCCCc--hHHHHHHH-HHHHHHHHHhHHHHhh
Q 017470 266 VIIVKTAVGTIVTKLFG-YSMRTSFLVGVSLA-QIGEFAFVLLSRASNLHLVE--GKMYLLLL-GTTALSLVTTPLLFKL 340 (371)
Q Consensus 266 ~~~~K~~~~~~~~~~~~-~~~~~~~~~g~~l~-~~g~~~li~a~~a~~~g~i~--~~~~~~lv-~~vils~l~~p~~~~~ 340 (371)
..+.--...++.-|+.+ .+..- |+..+ +-|.-...=+.++.-..-.. .+..+..+ ..+++|.+++|++..|
T Consensus 233 v~~vtG~~~~~~dr~~~g~~g~a----G~A~sstAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~ 308 (314)
T TIGR00793 233 VIILTGIPLILADKFIGGGDGTA----GIAASSSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVW 308 (314)
T ss_pred HHHHHhHHHHHHHHHhcCCCCch----hhHHHHHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223344556666663 23222 33322 22221111111221111111 22333333 5777899999999999
Q ss_pred hhh
Q 017470 341 IPN 343 (371)
Q Consensus 341 ~~~ 343 (371)
+++
T Consensus 309 ~~k 311 (314)
T TIGR00793 309 WSK 311 (314)
T ss_pred HHH
Confidence 864
No 34
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.76 E-value=0.13 Score=54.05 Aligned_cols=112 Identities=19% Similarity=0.302 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcc--hhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHH
Q 017470 185 AAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD--FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLAS 262 (371)
Q Consensus 185 ~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~--~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~ 262 (371)
..++.......++..+|+++++|=.++|++++..- .-++ .+.++.+.++-..++.+.+|+++|++.++.....+...
T Consensus 12 ~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~ 90 (601)
T PRK03659 12 LFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGV 90 (601)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 34444555677889999999999999999998741 1111 23455677788888888999999999887543222211
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhh
Q 017470 263 VILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQ 297 (371)
Q Consensus 263 ~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~ 297 (371)
...-++.-...+.......|+++..+..+|..++.
T Consensus 91 g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 91 GAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11111111111222334468888888888876554
No 35
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=96.62 E-value=0.014 Score=55.42 Aligned_cols=138 Identities=11% Similarity=0.095 Sum_probs=77.4
Q ss_pred hCchHHHH---HHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 200 LGLSLELG---SFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTI 276 (371)
Q Consensus 200 ~g~s~~lg---af~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~ 276 (371)
+...++++ .++.|+++.|.+ +++++.+.+-...++|+|-...|..+|+..+.+.....+.+-+...+.--...++
T Consensus 166 ip~~~lv~~llP~iiG~iLGNLD--~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~ 243 (314)
T PF03812_consen 166 IPWMSLVAALLPIIIGMILGNLD--PDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYL 243 (314)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC--HHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHH
Confidence 44444444 688999999963 3456677777789999999999999999998765322222211222222233455
Q ss_pred HHHHh-CCChHHHHHHHHHhhhHHHHHHHH-HHHHhhCCCCch--HHHHH-HHHHHHHHHHHhHHHHhhhhh
Q 017470 277 VTKLF-GYSMRTSFLVGVSLAQIGEFAFVL-LSRASNLHLVEG--KMYLL-LLGTTALSLVTTPLLFKLIPN 343 (371)
Q Consensus 277 ~~~~~-~~~~~~~~~~g~~l~~~g~~~li~-a~~a~~~g~i~~--~~~~~-lv~~vils~l~~p~~~~~~~~ 343 (371)
.-|+. |.+. ..|+..++....+... +.++.-.....+ +..+. +...+++|.+++|++.+|+++
T Consensus 244 ~dr~i~~~~g----~aG~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~k 311 (314)
T PF03812_consen 244 ADRLILKGNG----VAGAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWAK 311 (314)
T ss_pred HHHHHcCCCC----ceeehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55553 3332 2233333333222211 111211111221 22223 336778899999999999864
No 36
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.54 E-value=0.11 Score=49.94 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=87.7
Q ss_pred HhCchHHHHHHHHHHhccC-c-chhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHH-HHHHHHHH
Q 017470 199 KLGLSLELGSFMAGVMIST-T-DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVI-IVKTAVGT 275 (371)
Q Consensus 199 ~~g~s~~lgaf~aGl~~~~-~-~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~-~~K~~~~~ 275 (371)
..++++.+=|.+.|++++| . +..+...+-++.-...++..=-+..|.++++.++.+.....+......+ ..=..+.+
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~ 102 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYW 102 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 4688888999999999999 4 3333444444433457777778899999999998775432233333333 33334444
Q ss_pred HHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHH---HHHHHHHHHhHHHHhhhh
Q 017470 276 IVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL---GTTALSLVTTPLLFKLIP 342 (371)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv---~~vils~l~~p~~~~~~~ 342 (371)
++.|..|.+++.+..++.+.+-=|.-+++...-..+.. ++|.-..+. ..-.+..++-|.+.++..
T Consensus 103 lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~l~~~l~ 170 (305)
T PF03601_consen 103 LGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPLLGHALG 170 (305)
T ss_pred HHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHHHHHHhC
Confidence 44499999999999999887666644444433333332 233322222 233344566788888763
No 37
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.27 E-value=1 Score=44.24 Aligned_cols=106 Identities=21% Similarity=0.221 Sum_probs=69.9
Q ss_pred HHHHHHH-HHHHHHHhC-----chHHHHHHHHHHhccCcc---hhHH-HHHhhhcHHHHHhHHHHHHhccccchhhhhHH
Q 017470 186 AVAFCLL-SAWCSDKLG-----LSLELGSFMAGVMISTTD---FAKH-TLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 255 (371)
Q Consensus 186 ~l~~~~~-~~~ia~~~g-----~s~~lgaf~aGl~~~~~~---~~~~-~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~ 255 (371)
.+.+++. ..++.++++ +..+.++++.|.+++|.- +.++ ..+..+.+.++-+-+|-...=+++.+-++.+.
T Consensus 226 ~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l 305 (404)
T COG0786 226 IIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL 305 (404)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444 345666655 667899999999999951 2222 34566667889999999988899988888765
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 017470 256 VDILLAS-VILVIIVKTAVGTIVTKLFGYSMRTSFLV 291 (371)
Q Consensus 256 ~~~~~~~-~~~~~~~K~~~~~~~~~~~~~~~~~~~~~ 291 (371)
+..++++ .+-.++--+...+...|..|.+.-.+...
T Consensus 306 ~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~ 342 (404)
T COG0786 306 ALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLA 342 (404)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHh
Confidence 4333332 22233444556667778888887666653
No 38
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.24 E-value=0.17 Score=48.64 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=92.2
Q ss_pred HHHHhCchHHHHHHHHHHhccCcchh-HHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 017470 196 CSDKLGLSLELGSFMAGVMISTTDFA-KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVG 274 (371)
Q Consensus 196 ia~~~g~s~~lgaf~aGl~~~~~~~~-~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~ 274 (371)
..+..|.++..=|.+.|+++++..+. ++..+-++--+..++.+=-+..|++++++++.+...-.+...+..+..-++.+
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~ 110 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLFA 110 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 35566777888899999999965332 23233333223466666678899999999987754444555556667777778
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHH---HhHHHHhhh
Q 017470 275 TIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLV---TTPLLFKLI 341 (371)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l---~~p~~~~~~ 341 (371)
+...+..|.|++.+..+|.+-+-=|.-++.... . ..+--++|....+..+++++++ .-|.+..+.
T Consensus 111 ~~lg~~lgld~~~a~Lia~GssICGasAiaA~~-p-vika~~~eva~aIa~V~lfgtia~llyP~l~~~l 178 (334)
T COG2855 111 YFLGKLLGLDKKLALLIAAGSSICGASAIAATA-P-VIKAEEEEVAVAIAVVVLFGTLAMLLYPLLYPLL 178 (334)
T ss_pred HHHHHHhCCCHHHHHHHHccchhhHHHHHHHhC-C-cCCCCccccceehhhHHHHHHHHHHHHHHHHHHh
Confidence 888889999999999999876666643333322 1 1223344555555455555443 346665554
No 39
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.22 E-value=0.2 Score=52.33 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcchh---HHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHH
Q 017470 186 AVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFA---KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLAS 262 (371)
Q Consensus 186 ~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~~---~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~ 262 (371)
.+.+......+++.+|.+.+++-.++|++++..-.+ .+-.+..+.+.++.+++.....|+++|++.+...+.....+
T Consensus 14 ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~l 93 (562)
T PRK05326 14 LLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSL 93 (562)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHH
Confidence 334444566778889999999999999999875211 01123445567899999999999999999988765433322
Q ss_pred -HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHH
Q 017470 263 -VILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIG 299 (371)
Q Consensus 263 -~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g 299 (371)
.+...+.=.+.+.......+.++.+++.+|..+++-.
T Consensus 94 a~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td 131 (562)
T PRK05326 94 ATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTD 131 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCc
Confidence 2222222233344555667899999999998777655
No 40
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.94 E-value=0.42 Score=46.45 Aligned_cols=141 Identities=10% Similarity=0.082 Sum_probs=82.0
Q ss_pred hCchHHHHHHHHHHhccCcc---hhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHH-HHH
Q 017470 200 LGLSLELGSFMAGVMISTTD---FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTA-VGT 275 (371)
Q Consensus 200 ~g~s~~lgaf~aGl~~~~~~---~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~-~~~ 275 (371)
.++++.+=|.+.|++++|.- ..+...+-++-....++-.=-+..|+++++.++.+.....+...+..+..-+. +.+
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 47888888999999999942 22222222221224555555678899999999876543333333333333444 344
Q ss_pred HHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH---HHHHHhHHHHhhhh
Q 017470 276 IVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTA---LSLVTTPLLFKLIP 342 (371)
Q Consensus 276 ~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vi---ls~l~~p~~~~~~~ 342 (371)
++.|..|.+++.+..++.+-+-=|.-+++...=..+. -++|.-..+..+.+ +.+++-|.+.++..
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A--~~~~~a~ava~V~lfgt~am~l~P~l~~~l~ 176 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKA--EKEKVSVAIAIVVIFGTTGIFLYPSIYHYAS 176 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCC--CccceeeeehHHHHHHHHHHHHHHHHHHHHc
Confidence 5557899999999999887766664444433322222 23333222222333 34556688776654
No 41
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.77 E-value=0.076 Score=51.35 Aligned_cols=136 Identities=10% Similarity=0.015 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 017470 204 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY 283 (371)
Q Consensus 204 ~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~ 283 (371)
+.+.+++.|..++|. .+++.+..++=.++++|++-...|.++|+..+.......+++....++......+...|..+.
T Consensus 175 ~allplliG~~lgnl--~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~~ 252 (326)
T PRK05274 175 GAVLPLLVGFILGNL--DPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIGG 252 (326)
T ss_pred HHHHHHHHHHHHHhH--HHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheeec
Confidence 344688999999984 223344444444679999999999999998875532222222222333344444555576643
Q ss_pred ChH---HHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 017470 284 SMR---TSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPN 343 (371)
Q Consensus 284 ~~~---~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~~~ 343 (371)
+++ .+...+.+-+--| -+.+.+ ..-+..-..++.-..+..++++|+++.|++..+.++
T Consensus 253 ~~g~~g~a~~ttaG~aic~-pAAvaa-~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k 313 (326)
T PRK05274 253 GNGVAGAAAGSTAGNAVAT-PAAVAA-ADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSK 313 (326)
T ss_pred CCCcchHHHHHHHHHHHHH-HHHHHh-hccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 1222221111111 111111 111111122333333345666899999999998764
No 42
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.64 E-value=0.58 Score=51.16 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHhccCcc--hhH---------HHHHhhhcHHHHHhHHHHHHhccccchhhhhHH
Q 017470 187 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTD--FAK---------HTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 255 (371)
Q Consensus 187 l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~--~~~---------~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~ 255 (371)
+.+.-.+.++...++.+.++|=.++|++++..- ..+ +-.+.++.+.++-.-+|.+.+|+++|++.+...
T Consensus 52 l~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~ 131 (832)
T PLN03159 52 VVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRT 131 (832)
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhc
Confidence 333344566677788888888888888887631 111 112345566677777788899999999988754
No 43
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=95.27 E-value=0.51 Score=48.81 Aligned_cols=116 Identities=16% Similarity=0.228 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHH-H
Q 017470 187 VAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVI-L 265 (371)
Q Consensus 187 l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~-~ 265 (371)
++.+.....+++.+++++.++-.++|++++..+....+.-.-+.+..+++|......|.++|...+..++..+..+.+ .
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~ 86 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLL 86 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 344444566788888888888888888887542211110000113458889999999999999999877644433322 2
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHH
Q 017470 266 VIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFA 302 (371)
Q Consensus 266 ~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~ 302 (371)
.++.-.+.++......++++..++.+|..+++..-..
T Consensus 87 vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva 123 (525)
T TIGR00831 87 VVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence 2233333333333467899999999999888877433
No 44
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=94.72 E-value=1.4 Score=43.73 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 017470 204 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY 283 (371)
Q Consensus 204 ~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~ 283 (371)
.++-....|++.+..|..+.+ +--+++..+++=+||..+|++.|+..+.+.+ ......++.+..-.+..+..+|++|.
T Consensus 242 ~il~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~ap-~~~l~~~i~l~iH~~l~l~~~kl~k~ 319 (378)
T PF05684_consen 242 LILTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLDAP-SLFLFGFIILAIHLLLMLILGKLFKI 319 (378)
T ss_pred HHHHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 355566777777666555443 5556677899999999999999999987743 33344445567777778888999999
Q ss_pred ChHHHHHHHHHhhhHHHHH
Q 017470 284 SMRTSFLVGVSLAQIGEFA 302 (371)
Q Consensus 284 ~~~~~~~~g~~l~~~g~~~ 302 (371)
|.++....+. ...|..+
T Consensus 320 ~l~~~~vAS~--AnIGGpa 336 (378)
T PF05684_consen 320 DLFELLVASN--ANIGGPA 336 (378)
T ss_pred CHHHHHHHhh--cccCCcc
Confidence 9887665554 4555433
No 45
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=93.62 E-value=1 Score=40.25 Aligned_cols=128 Identities=15% Similarity=0.195 Sum_probs=75.1
Q ss_pred HHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhcccc--chhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 206 LGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLI--HVHF---LWNHVDILLASVILVIIVKTAVGTIVTKL 280 (371)
Q Consensus 206 lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l--~l~~---l~~~~~~~~~~~~~~~~~K~~~~~~~~~~ 280 (371)
++++++|+++......+ .+..+...+..+-+.-..+|.++ |-.. +.+.....+.+-+..+++-.+++.+...+
T Consensus 2 l~~li~Gi~lG~~~~~~--~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP--FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhccc--ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888877653222 22224555433333333445544 4322 33222334455556778999999999999
Q ss_pred hCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHH----HHHHHhHHHHhhh
Q 017470 281 FGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTA----LSLVTTPLLFKLI 341 (371)
Q Consensus 281 ~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vi----ls~l~~p~~~~~~ 341 (371)
.+++.+|+..++.+++=-+--+..++.. .+++.-++..+.=+ ++.+..|++.|+.
T Consensus 80 l~~~~~~~lav~sG~GwYSlsg~~i~~~------~~~~~G~iafl~n~~RE~~a~~~~P~~~r~~ 138 (191)
T PF03956_consen 80 LGLSLKESLAVASGFGWYSLSGVLITQL------YGPELGTIAFLSNLFREILAIILIPLLARYF 138 (191)
T ss_pred hcCCHHHHHHHHccCcHHHhHHHHHHhh------hCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999987766555444444432 34455444433322 3556778888844
No 46
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=93.09 E-value=10 Score=37.81 Aligned_cols=115 Identities=16% Similarity=0.192 Sum_probs=70.4
Q ss_pred HHHHHhHHHHHHhccccchhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-HHh-hhHHHHHHHH
Q 017470 231 IRNLFAALFLSSIGMLIHVHFLWNHVDILL---ASVILVIIVKTAVGTIVTKLFGYSMRTSFLVG-VSL-AQIGEFAFVL 305 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~l~~~~~~~~---~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g-~~l-~~~g~~~li~ 305 (371)
+.++++-+||..+|+.-+++.+.+...... .+.......+.+.+...+...|.++.-....| .+| ...| .+...
T Consensus 65 l~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHG-TAaA~ 143 (398)
T TIGR00210 65 LRDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHG-TGAAW 143 (398)
T ss_pred HHHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCc-HHHHH
Confidence 447899999999999999988765432222 22223456777777777788899887776632 332 3334 33444
Q ss_pred HHHHhh-CCCCchHHHHHHH--HHHHHHHHHhHHHHhhhhhhhh
Q 017470 306 LSRASN-LHLVEGKMYLLLL--GTTALSLVTTPLLFKLIPNVMN 346 (371)
Q Consensus 306 a~~a~~-~g~i~~~~~~~lv--~~vils~l~~p~~~~~~~~~~~ 346 (371)
+..-.+ .|.-+.....+.. +-.+...+++-++.++.-|.++
T Consensus 144 g~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lirk~~ 187 (398)
T TIGR00210 144 SPVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLIIRNK 187 (398)
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444323 5765554443333 4455677888777777644443
No 47
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.08 E-value=0.88 Score=43.18 Aligned_cols=119 Identities=18% Similarity=0.301 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCcch----hHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHH
Q 017470 185 AAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTTDF----AKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILL 260 (371)
Q Consensus 185 ~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~----~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~ 260 (371)
.-+..+|..+.+++.+.++|..|=.+||.+...... ++.+..++..+.- .+.-.-+|+++.+.++...-.+.+
T Consensus 13 ~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGV---iLLmFgvGLhfslkdLLavk~iAi 89 (408)
T COG4651 13 GGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGV---ILLMFGVGLHFSLKDLLAVKAIAI 89 (408)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhH---HHHHHhcchheeHHHHhhHHHHhc
Confidence 345667778889999999999999999999986422 2344444444443 333567899999888765322221
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHH
Q 017470 261 ASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLL 306 (371)
Q Consensus 261 ~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a 306 (371)
--.+.-+..-..-++...+..|++....+..|+.++..+++-+.=+
T Consensus 90 pgAl~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllra 135 (408)
T COG4651 90 PGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRA 135 (408)
T ss_pred chHHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHH
Confidence 1111111111222334456678998888888988887776554443
No 48
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=92.88 E-value=1.6 Score=46.98 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=48.3
Q ss_pred HHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hCCChHHHHHHHHHhhhHH
Q 017470 231 IRNLFAALFLSSIGMLIHVHFLWNHVDILLASVIL-VIIVKTAVGTIVTKL-FGYSMRTSFLVGVSLAQIG 299 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~-~~~~K~~~~~~~~~~-~~~~~~~~~~~g~~l~~~g 299 (371)
+.++.+++--+..|.+++...+...|..+..++.. +.++=.+.+.++..+ .|+++..++.+|..++|-.
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTD 144 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATD 144 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCc
Confidence 66788888888999999999998887554433333 333333333333334 5999999999998888755
No 49
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=92.85 E-value=7.4 Score=35.51 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=77.9
Q ss_pred HHHHHhhhcHH-HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHH
Q 017470 222 KHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGE 300 (371)
Q Consensus 222 ~~~~~~l~~i~-~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ 300 (371)
+-+..-++|-. .+-.|+| =+.+.+.++|..+...+++....-..++++.++.+|.+.. ...+ +.||+.
T Consensus 62 ~~i~~lLgPAtVAlAvPLY-------kq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~S--l~PkSv 130 (230)
T COG1346 62 QWINFLLGPATVALAVPLY-------KQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LILS--LLPKSV 130 (230)
T ss_pred HHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHH--hccccc
Confidence 34444555533 4666766 3456677788766666666666777888888899988753 3444 689998
Q ss_pred HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 301 FAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 301 ~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
-+-+...++.+.|-+++-....++.+-++..+++|.+.|+.
T Consensus 131 TTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 131 TTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88787788888887777666666677788888999999887
No 50
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.84 E-value=5.6 Score=34.11 Aligned_cols=120 Identities=19% Similarity=0.201 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHhCch--HHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHH---HHHHHH
Q 017470 187 VAFCLLSAWCSDKLGLS--LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH---VDILLA 261 (371)
Q Consensus 187 l~~~~~~~~ia~~~g~s--~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~---~~~~~~ 261 (371)
+.++...+++.+.+|+. .++|+.+++.+++-....+ .+.=+.+..+-.-+.=..+|.+++.+.+.+. +...+.
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~--~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~ 81 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLE--ITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALL 81 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCcc--CCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 33445566677888876 6888888888877432111 1111123345555556789999998877653 222334
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Q 017470 262 SVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLH 313 (371)
Q Consensus 262 ~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g 313 (371)
..+..+..-...++...+..++|..+++ ++ ..|-|.-+... ++.+.|
T Consensus 82 ~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~--~A~~~g 128 (156)
T TIGR03082 82 STVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAA--LAAELG 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHH--HHHHhC
Confidence 4445566677778888899999988875 34 35777555444 334444
No 51
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=92.68 E-value=0.013 Score=57.63 Aligned_cols=110 Identities=15% Similarity=0.294 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHhccCcchh--HHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHH
Q 017470 190 CLLSAWCSDKLGLSLELGSFMAGVMISTTDFA--KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVI 267 (371)
Q Consensus 190 ~~~~~~ia~~~g~s~~lgaf~aGl~~~~~~~~--~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~ 267 (371)
.+....+.+.+++++.++-.++|+++++.... ++-.+..+.+.++..++.....|.++|.+.+...+...........
T Consensus 8 ~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~ 87 (380)
T PF00999_consen 8 AFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGF 87 (380)
T ss_dssp ----------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccee
Confidence 33344478999999999999999999997433 1114566677888888888899999999998776544333222222
Q ss_pred HHHHHH-HHHHHH---HhCCChHHHHHHHHHhhhHH
Q 017470 268 IVKTAV-GTIVTK---LFGYSMRTSFLVGVSLAQIG 299 (371)
Q Consensus 268 ~~K~~~-~~~~~~---~~~~~~~~~~~~g~~l~~~g 299 (371)
..-... ++.... ..|+++.++...|..+++-+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 88 LLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp --------------------------TTHHHHTT--
T ss_pred eehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 223332 333332 46889999999998877655
No 52
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=92.01 E-value=0.73 Score=45.21 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=65.6
Q ss_pred cHHHHHhHHHHHHhccccchhhhhHHHHH-HH--HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH-Hh-hhHHHHHHH
Q 017470 230 PIRNLFAALFLSSIGMLIHVHFLWNHVDI-LL--ASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGV-SL-AQIGEFAFV 304 (371)
Q Consensus 230 ~i~~~f~plFF~~~G~~l~l~~l~~~~~~-~~--~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~-~l-~~~g~~~li 304 (371)
++++.|+-+||..+|+.-+++.+.+.+-. .+ .........+-..+...++..|.++.-+...|- .| +..| -+..
T Consensus 66 ~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHG-taAA 144 (404)
T COG0786 66 SLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHG-TAAA 144 (404)
T ss_pred ccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCc-hHHH
Confidence 47799999999999999999998764322 11 111122334444455556777887766665532 22 1222 4555
Q ss_pred HHHHHhhCCCCchHHHHHHH--HHHHHHHHHhHHHHhhh
Q 017470 305 LLSRASNLHLVEGKMYLLLL--GTTALSLVTTPLLFKLI 341 (371)
Q Consensus 305 ~a~~a~~~g~i~~~~~~~lv--~~vils~l~~p~~~~~~ 341 (371)
.+....+.|.-+.....+.. +-.+.-.+++.++.||.
T Consensus 145 ~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~l 183 (404)
T COG0786 145 WGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWL 183 (404)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHH
Confidence 66666667776554333332 33444567777777766
No 53
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=91.16 E-value=2.6 Score=41.56 Aligned_cols=112 Identities=14% Similarity=0.184 Sum_probs=63.5
Q ss_pred HHHHHhHHHHHHhccccchhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH-HHh-hhHHHHHHHH
Q 017470 231 IRNLFAALFLSSIGMLIHVHFLWNHVDILL---ASVILVIIVKTAVGTIVTKLFGYSMRTSFLVG-VSL-AQIGEFAFVL 305 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~l~~~~~~~~---~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g-~~l-~~~g~~~li~ 305 (371)
+.+.++-.||..+|+..++..+.+.+..+. .+.......+.+.+...+...+.++......| .++ ...| .+...
T Consensus 65 l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhG-TAaa~ 143 (368)
T PF03616_consen 65 LQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHG-TAAAF 143 (368)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCcc-HHHHH
Confidence 567888899999999999888765432211 12222345666666666777888876665553 222 2233 34444
Q ss_pred HHHHhhC-CCCchHHHHHHH--HHHHHHHHHhHHHHhhhhh
Q 017470 306 LSRASNL-HLVEGKMYLLLL--GTTALSLVTTPLLFKLIPN 343 (371)
Q Consensus 306 a~~a~~~-g~i~~~~~~~lv--~~vils~l~~p~~~~~~~~ 343 (371)
+..-.+. |.-+.....+.. +-.+...+++-++.++.-|
T Consensus 144 g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lir 184 (368)
T PF03616_consen 144 GPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIR 184 (368)
T ss_pred HHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443344 664444333322 3334456676556666543
No 54
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=90.51 E-value=6.4 Score=37.81 Aligned_cols=135 Identities=21% Similarity=0.181 Sum_probs=85.6
Q ss_pred chHHHHHHHHHHhccCcc--hhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 202 LSLELGSFMAGVMISTTD--FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK 279 (371)
Q Consensus 202 ~s~~lgaf~aGl~~~~~~--~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~ 279 (371)
.+|.+=|.++|+++.-.+ ..+-+.+.++.+.+...|+=-+.+|+.++.......+...........+.-++.++....
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~ 260 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISK 260 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888887642 345667788888899999999999999988776544333444455566667777777777
Q ss_pred HhCCChHHHHHHHHH--hhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhh
Q 017470 280 LFGYSMRTSFLVGVS--LAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKL 340 (371)
Q Consensus 280 ~~~~~~~~~~~~g~~--l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~ 340 (371)
..+.+..+. ..... -.|-+....++ +.++|.-.+...+.+....++|.+.-|++...
T Consensus 261 ~~~l~~~~~-~~~vl~aa~P~a~~~~i~---A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 261 LIGLRGLEL-SVAILQAALPGGAVAAVL---ATEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HhCCChHHH-HHHHHHHcCChhhHHHHH---HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777764432 22221 23444343333 44556433344445556777777777877654
No 55
>COG0679 Predicted permeases [General function prediction only]
Probab=88.47 E-value=12 Score=35.83 Aligned_cols=138 Identities=22% Similarity=0.194 Sum_probs=91.8
Q ss_pred hCchHHHHHHHHHHhccCc--chhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHH-HHHHHHHHHHHHHHHHHH
Q 017470 200 LGLSLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDI-LLASVILVIIVKTAVGTI 276 (371)
Q Consensus 200 ~g~s~~lgaf~aGl~~~~~--~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~-~~~~~~~~~~~K~~~~~~ 276 (371)
.=.+|.+=|.+.|+++... +..+.+.+-++.+.+--.|.=.+..|+.++.......... .........+..++..+.
T Consensus 165 ~~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~ 244 (311)
T COG0679 165 LLTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALL 244 (311)
T ss_pred HHhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 3457888888899888853 3445677788888899999999999999999554433222 223333356777888888
Q ss_pred HHHHhCCChHHHHHHHHH--hhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 277 VTKLFGYSMRTSFLVGVS--LAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 277 ~~~~~~~~~~~~~~~g~~--l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
..+..|.+..+. ..... ..|.+....+++ .+.+.-.+...+.+.....++.+..|....+.
T Consensus 245 ~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a---~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 245 VAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLA---RQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHHHcCCChHHH-HHHHHHhhCcHHhHHHHHH---HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888876654 22222 345555544444 34555444555556677777777777776655
No 56
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=88.27 E-value=7.1 Score=38.06 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=64.8
Q ss_pred CchHHHHHHHHHHhccCcc-hhHHHHHhhhcHHH----HHhHHHHHHhccc-cchhhhhHHH-HHHHHHHHHHHHHHHHH
Q 017470 201 GLSLELGSFMAGVMISTTD-FAKHTLDQVEPIRN----LFAALFLSSIGML-IHVHFLWNHV-DILLASVILVIIVKTAV 273 (371)
Q Consensus 201 g~s~~lgaf~aGl~~~~~~-~~~~~~~~l~~i~~----~f~plFF~~~G~~-l~l~~l~~~~-~~~~~~~~~~~~~K~~~ 273 (371)
++|+..-+.+.|.++.... -.++++++.+.... -+.+..++-+|+. .|++.+.+.. +..+...+..+++=.++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 6788888888888888753 23344554444432 3333334445766 7887776543 33444555566777888
Q ss_pred HHHHHHHhCCChHHH-HHHHHHhhhHHHH
Q 017470 274 GTIVTKLFGYSMRTS-FLVGVSLAQIGEF 301 (371)
Q Consensus 274 ~~~~~~~~~~~~~~~-~~~g~~l~~~g~~ 301 (371)
+++..|+.|+-+-|+ +..|++++.+|.-
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGt 311 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGT 311 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCC
Confidence 888899998766665 5557789888853
No 57
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=86.59 E-value=35 Score=33.67 Aligned_cols=89 Identities=17% Similarity=0.213 Sum_probs=56.9
Q ss_pred hCchHHHHHHHHHHhccCcch---hHHHH-HhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHH-HHHHHHHHHHHH
Q 017470 200 LGLSLELGSFMAGVMISTTDF---AKHTL-DQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLAS-VILVIIVKTAVG 274 (371)
Q Consensus 200 ~g~s~~lgaf~aGl~~~~~~~---~~~~~-~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~-~~~~~~~K~~~~ 274 (371)
+.+..+.+|++.|+++.|.-+ ..++. +.++.+.++.+-+|-+..=+++++..+.++....+.+ ++-.++.-+...
T Consensus 245 ~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~ 324 (368)
T PF03616_consen 245 LTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAY 324 (368)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999998521 12232 2444566777777777777889999998875444332 322333344455
Q ss_pred HHHHHHhCCChHHH
Q 017470 275 TIVTKLFGYSMRTS 288 (371)
Q Consensus 275 ~~~~~~~~~~~~~~ 288 (371)
+...|..|.++..+
T Consensus 325 fv~fr~~gkdydaa 338 (368)
T PF03616_consen 325 FVTFRVMGKDYDAA 338 (368)
T ss_pred HHhhhhhCCChhHH
Confidence 66677888886433
No 58
>PRK10711 hypothetical protein; Provisional
Probab=86.58 E-value=16 Score=33.63 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=65.7
Q ss_pred hhhcHH-HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHH
Q 017470 227 QVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVL 305 (371)
Q Consensus 227 ~l~~i~-~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~ 305 (371)
-++|-. .+-.|+| =+.+.+.+++..+...+.+..+.-..+++..++..|.+.. .. .+|.||+.-.-+.
T Consensus 65 lLgPAtVALAvPLY-------~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~~--~Sl~pkSVTtPIA 133 (231)
T PRK10711 65 LLQPAVVALAFPLY-------EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE--IA--ASILPKSVTTPIA 133 (231)
T ss_pred hhhHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhhhhhHHHH
Confidence 344433 4556655 3445566666555544444555566777788888888643 33 3478999777777
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 306 LSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 306 a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
..++.+.|-+.+-.....+..-++-.+++|.+.|+.
T Consensus 134 m~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 134 MAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777777766544444444566666778889988886
No 59
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=86.14 E-value=15 Score=35.45 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=65.1
Q ss_pred HHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 017470 232 RNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASN 311 (371)
Q Consensus 232 ~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~ 311 (371)
++++=|+-|.-+|...|++.+..++...+ +-..+-.+-+. ++..+...|.+.+|+..+|..=..-|-.++.+++.
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllanP~~~l-lGaaAQ~Gif~-t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~--- 142 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLANPKTLL-LGAAAQFGIFA-TFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSK--- 142 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhCHHHHH-HHHHHHHhHHH-HHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHh---
Confidence 36999999999999999998876654322 11122233333 44555667999999999888545555555555442
Q ss_pred CCCCchHHHHHHHH----HHHHHHHHhHHHHhhhhhhhh
Q 017470 312 LHLVEGKMYLLLLG----TTALSLVTTPLLFKLIPNVMN 346 (371)
Q Consensus 312 ~g~i~~~~~~~lv~----~vils~l~~p~~~~~~~~~~~ 346 (371)
+.++.+..+.. +..+.=++-|++.|.....+.
T Consensus 143 ---LAp~LlgpIaVaAYsYMaLvPiiqPpimklLttkke 178 (360)
T PF03977_consen 143 ---LAPHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKE 178 (360)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHH
Confidence 34555544321 222233566788888754443
No 60
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=85.34 E-value=28 Score=34.08 Aligned_cols=109 Identities=15% Similarity=0.184 Sum_probs=65.1
Q ss_pred HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q 017470 233 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNL 312 (371)
Q Consensus 233 ~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~ 312 (371)
+++=|+-|.-+|...|++.+..++...+..-..+-++-+. ++..+...|.+.+|+..+|..=+.-|-.++.+++.
T Consensus 105 gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~-t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~k---- 179 (399)
T TIGR03136 105 SLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFA-TLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLI---- 179 (399)
T ss_pred ccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHH-HHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHh----
Confidence 6999999999999999998876554322211223333333 33455567999999999988545555555555442
Q ss_pred CCCchHHHHHHHH----HHHHHHHHhHHHHhhhhhhhhhh
Q 017470 313 HLVEGKMYLLLLG----TTALSLVTTPLLFKLIPNVMNLG 348 (371)
Q Consensus 313 g~i~~~~~~~lv~----~vils~l~~p~~~~~~~~~~~~~ 348 (371)
+.++.+..+.. +..+.=++=|++.|.....+.|+
T Consensus 180 --LAp~Llg~IaVAAYsYMaLVPiiqPpimklLttkkER~ 217 (399)
T TIGR03136 180 --LAKDLFVPISIIAYLYLSLTYAGYPYLIKLLVPKKYRG 217 (399)
T ss_pred --hhhHhHHHHHHHHHHHHHHHhcccchHHHhhcCHHHHc
Confidence 23444443321 22222345688888875544433
No 61
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=85.04 E-value=38 Score=32.68 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHHHHhCchH--HHHHHHHHHhccCcchh-HHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHH---H
Q 017470 184 LAAVAFCLLSAWCSDKLGLSL--ELGSFMAGVMISTTDFA-KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHV---D 257 (371)
Q Consensus 184 ~~~l~~~~~~~~ia~~~g~s~--~lgaf~aGl~~~~~~~~-~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~---~ 257 (371)
...+..+...+++++.+++.. ++|+++.+..++..... -..-+ .+.....-+.=..+|.++|.+.+.+.. .
T Consensus 158 ~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~---~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~ 234 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPP---WLVNAAQVLIGASIGSRFTRETLRELRRLLP 234 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 344555666788889887754 88888888887754211 11111 233455555567899999988776533 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHH-HHHHhHH
Q 017470 258 ILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTAL-SLVTTPL 336 (371)
Q Consensus 258 ~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vil-s~l~~p~ 336 (371)
..+...+..+..-.+.++...+..+.+..+++ ++ ..|-|.-+..+... +.| .|...-+..-..=++ -.+..|+
T Consensus 235 ~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~-La--~aPGGl~eM~l~A~--~l~-~d~~~V~~~q~~Rl~~v~~~~p~ 308 (318)
T PF05145_consen 235 PALLSTLLLLALCALFAWLLSRLTGIDFLTAL-LA--TAPGGLAEMALIAL--ALG-ADVAFVAAHQVVRLLFVLLLAPF 308 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCccHHHHHHHHH--HcC-CChHHHHHHHHHHHHHHHHHHHH
Confidence 22334444556677778888899999887654 33 46877655555433 333 243332222222122 2346788
Q ss_pred HHhhhhh
Q 017470 337 LFKLIPN 343 (371)
Q Consensus 337 ~~~~~~~ 343 (371)
+.|+..|
T Consensus 309 ~~r~~~r 315 (318)
T PF05145_consen 309 IARWLRR 315 (318)
T ss_pred HHHHHHH
Confidence 8888743
No 62
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=83.79 E-value=15 Score=37.02 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=38.9
Q ss_pred HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHhhhHH
Q 017470 233 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLF--GYSMRTSFLVGVSLAQIG 299 (371)
Q Consensus 233 ~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~--~~~~~~~~~~g~~l~~~g 299 (371)
.+++|.--..-|.++|.+.+.+++..+..+.....+...++........ ++++..++..|..++|-.
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTD 132 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTD 132 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCC
Confidence 6777777778899999988887765443332222222222222222222 666667777766666544
No 63
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=82.90 E-value=27 Score=31.80 Aligned_cols=90 Identities=18% Similarity=0.227 Sum_probs=57.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHH
Q 017470 248 HVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTT 327 (371)
Q Consensus 248 ~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~v 327 (371)
+.+.+.+++..++..+.+..+.-.......++..|.+.. ...+ +.||+.-.-+...++.+.|-..+-.....+.+-
T Consensus 69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~~S--l~pkSVTtpiAi~is~~iGG~~sLta~~VvitG 144 (215)
T PF04172_consen 69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--IILS--LAPKSVTTPIAIEISEQIGGIPSLTAVFVVITG 144 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHHH--HHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345566666555554444555566667777888888643 3444 689997666666666666655444444444566
Q ss_pred HHHHHHhHHHHhhh
Q 017470 328 ALSLVTTPLLFKLI 341 (371)
Q Consensus 328 ils~l~~p~~~~~~ 341 (371)
++-.+++|.+.|+.
T Consensus 145 i~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 145 ILGAVLGPPLLKLL 158 (215)
T ss_pred hHHHHhHHHHHhHc
Confidence 66677888888885
No 64
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=82.23 E-value=33 Score=31.40 Aligned_cols=98 Identities=13% Similarity=0.185 Sum_probs=61.2
Q ss_pred HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhC
Q 017470 233 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNL 312 (371)
Q Consensus 233 ~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~ 312 (371)
.+-.|+| =+.+.+.+++..+.....+....-..+....++..|.+.. ... ++.||+.-.-+...++.+.
T Consensus 71 ALAvPLY-------~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~~--Sl~pkSvTtpiAm~vs~~i 139 (226)
T TIGR00659 71 ALAIPLY-------KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE--IIA--SLLPKSVTTPIAMHVSEMI 139 (226)
T ss_pred HHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HhhhHHhhHHHHHHHHHHh
Confidence 4556664 3445566666544444444445556667777888888743 333 4789997776666777776
Q ss_pred CCCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 313 HLVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 313 g~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
|-..+-.....+..-++-.+++|.+.|+.
T Consensus 140 GG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 140 GGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 65444444444466666777888888876
No 65
>PRK09903 putative transporter YfdV; Provisional
Probab=78.97 E-value=56 Score=31.24 Aligned_cols=133 Identities=11% Similarity=0.012 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHhccCc--chhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 203 SLELGSFMAGVMISTT--DFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 280 (371)
Q Consensus 203 s~~lgaf~aGl~~~~~--~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~ 280 (371)
+|.+=+.++|+++.-. +..+.+.+.++.+.+...|+=-..+|++++......... .....+...+.-++..+.....
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i~~~~~~~ 251 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLALLLVGMA 251 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777765543 344567778888889999999999999986554322121 2222334555556666655566
Q ss_pred hCCChHHHHHHHHH--hhhHHHHHHHHHHHHhhCCCCchHHHHHHH-HHHHHHHHHhHHHHhhh
Q 017470 281 FGYSMRTSFLVGVS--LAQIGEFAFVLLSRASNLHLVEGKMYLLLL-GTTALSLVTTPLLFKLI 341 (371)
Q Consensus 281 ~~~~~~~~~~~g~~--l~~~g~~~li~a~~a~~~g~i~~~~~~~lv-~~vils~l~~p~~~~~~ 341 (371)
.+.+..+. ..... -.|-+....++ +.+.|. |++..+..+ ...+++.+.-|++....
T Consensus 252 ~~l~~~~~-~v~vl~aa~P~a~~~~i~---A~~y~~-~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 252 CHLNSEHL-QMMVLAGALPPAFSGIII---ASRFNV-YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred cCCCcHHH-HHHHHHHcccHHHHHHHH---HHHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66654332 22222 24444444444 445554 555555444 56667777778887764
No 66
>COG3329 Predicted permease [General function prediction only]
Probab=78.86 E-value=35 Score=32.63 Aligned_cols=121 Identities=14% Similarity=0.047 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHhccCcchhHHHHHhhhcHHHHHh-HHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 202 LSLELGSFMAGVMISTTDFAKHTLDQVEPIRNLFA-ALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 280 (371)
Q Consensus 202 ~s~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~-plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~ 280 (371)
++|.+.-|+.|++.+-.+.+-++-+.+...-.+.+ --.=..=|.++.-+.+..........+.+.++.-++..++..++
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~kl 95 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLRKL 95 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47888888899888875443333333332222111 00111224444444443322223333334455556666677777
Q ss_pred hCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHH
Q 017470 281 FGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLL 322 (371)
Q Consensus 281 ~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~ 322 (371)
.+.+..|+..++-..+..+..+...+..-++..-+..|-|..
T Consensus 96 ~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~ 137 (372)
T COG3329 96 PKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMP 137 (372)
T ss_pred cccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHH
Confidence 899999999998877777777777666555443345555543
No 67
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=78.10 E-value=18 Score=36.07 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=61.5
Q ss_pred hCchHHHHHHHHHHhccCcch----hHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHH-HHHHHHHH
Q 017470 200 LGLSLELGSFMAGVMISTTDF----AKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILV-IIVKTAVG 274 (371)
Q Consensus 200 ~g~s~~lgaf~aGl~~~~~~~----~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~-~~~K~~~~ 274 (371)
..++.+.+|++.|++++|.-+ .+...+.++.+.+..+-+|-+..=+++++..+.+++...+.+.+.- +..=....
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999521 1222345556678888888888889999999988765554443333 33333455
Q ss_pred HHHHHHhCCChHHHHH
Q 017470 275 TIVTKLFGYSMRTSFL 290 (371)
Q Consensus 275 ~~~~~~~~~~~~~~~~ 290 (371)
++..|..|.+ .|+..
T Consensus 323 fv~fr~mg~~-ydaaV 337 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAV 337 (398)
T ss_pred HHhHHhccch-HHHHH
Confidence 6667777766 66655
No 68
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=77.78 E-value=58 Score=29.97 Aligned_cols=105 Identities=11% Similarity=0.113 Sum_probs=69.6
Q ss_pred HhhhcHH-HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHH
Q 017470 226 DQVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFV 304 (371)
Q Consensus 226 ~~l~~i~-~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li 304 (371)
.-++|-. .+-.|+| -+.+.+.++|..+.....+....-..+++..++..|.+.. .. .++.||+.-.-+
T Consensus 69 ~lLgPAtVALAvPLY-------~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~--~~--~Sl~pKSVTtPI 137 (232)
T PRK04288 69 FFLEPATIAFAIPLY-------KKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA--VM--ASMLPQAATTAI 137 (232)
T ss_pred HHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhHhhhHHH
Confidence 3444433 4666665 3456677776655555555556667777788888888753 33 447899977777
Q ss_pred HHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 305 LLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 305 ~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
...++.+.|-+.+-.....+.+-++-.+++|.+.|+.
T Consensus 138 Am~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 138 ALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7777777776555555555566777788889988886
No 69
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=77.22 E-value=76 Score=31.06 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHhCchH--HHH-HHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhH---HHHH
Q 017470 185 AAVAFCLLSAWCSDKLGLSL--ELG-SFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDI 258 (371)
Q Consensus 185 ~~l~~~~~~~~ia~~~g~s~--~lg-af~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~---~~~~ 258 (371)
..+.+.+..+++.+.+|+.. ++| ..++|.+..-....-..-+. +..+-..+-=..+|.++..+.+.+ +|..
T Consensus 13 i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~l~~P~~---l~~~~q~ilG~~ig~~~t~s~l~~l~~~w~~ 89 (352)
T COG3180 13 ILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLTLPLPRG---LFKAGQVILGIMIGASLTPSVLDTLKSNWPI 89 (352)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccccccCChH---HHHHHHHHHHHHHhhhcCHHHHHHHHHcccH
Confidence 34455556777888877743 666 44444444422111111111 223334444568899998887654 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHH-HHHHHHHHhHHH
Q 017470 259 LLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLG-TTALSLVTTPLL 337 (371)
Q Consensus 259 ~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~-~vils~l~~p~~ 337 (371)
+....+..+..-.+.+++..|+.++|..++..- .+|-|.-+... +|.++|- |...-+..-. =+++=+...|++
T Consensus 90 ~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~g---s~PGgas~m~~--iA~d~gA-d~~~VAl~Q~lRvl~Vvl~vplv 163 (352)
T COG3180 90 VLVVLLLTLLSSILLGWLLKRFSILPGNTAFLG---SSPGGASAMVS--IAQDYGA-DLRLVALMQYLRVLFVVLLAPLV 163 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchhhHh---cCCchHHHHHH--HHHHhCC-ChhHHHHHHHHHHHHHHHHHHHH
Confidence 455555566777788888888877776655433 35666544444 3445553 2222222211 122223466888
Q ss_pred Hhhhh
Q 017470 338 FKLIP 342 (371)
Q Consensus 338 ~~~~~ 342 (371)
.++.+
T Consensus 164 ~~~~~ 168 (352)
T COG3180 164 SRLFV 168 (352)
T ss_pred HHHhc
Confidence 88875
No 70
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=74.61 E-value=37 Score=33.24 Aligned_cols=103 Identities=14% Similarity=0.189 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhccCcc-hhHHHHHhhhcHH-HHHhHHH-HHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 204 LELGSFMAGVMISTTD-FAKHTLDQVEPIR-NLFAALF-LSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 280 (371)
Q Consensus 204 ~~lgaf~aGl~~~~~~-~~~~~~~~l~~i~-~~f~plF-F~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~ 280 (371)
+++....+|....+.+ ..++-.+.+..+. .+++|.. |..+.-+.+.+.+.+.+. ......+....-...+++..+.
T Consensus 8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWF-IPVFAFIIFILGLLLGFLLSRL 86 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666542 3344456666664 7888877 556666565655554433 2222222223334455566666
Q ss_pred hCCChHHHHH--HHHHhhhHHHHHHHHHH
Q 017470 281 FGYSMRTSFL--VGVSLAQIGEFAFVLLS 307 (371)
Q Consensus 281 ~~~~~~~~~~--~g~~l~~~g~~~li~a~ 307 (371)
.+.+++++.. .+...+.-|-+++-+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~N~~~lglpi~~ 115 (385)
T PF03547_consen 87 FRLPKEWRGVFVLAASFGNTGFLGLPILQ 115 (385)
T ss_pred cCCCcccceEEEecccCCcchhhHHHHHH
Confidence 6666655432 23234455555555444
No 71
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=74.08 E-value=78 Score=31.37 Aligned_cols=90 Identities=14% Similarity=0.149 Sum_probs=46.4
Q ss_pred HHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHhh---hHHHHHHHHH
Q 017470 231 IRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYS-MRTSFLVGVSLA---QIGEFAFVLL 306 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~-~~~~~~~g~~l~---~~g~~~li~a 306 (371)
+++.+.|.=-...=++.|++.+.....-.+...++..++-.+++..+....+.. .+|.+...-.+. .-|....+..
T Consensus 56 v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av 135 (378)
T PF05684_consen 56 VWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAV 135 (378)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHH
Confidence 456666666556667889988876544444444444555555555555544433 234433322121 2234555555
Q ss_pred HHHhhCCCCchHHHHHH
Q 017470 307 SRASNLHLVEGKMYLLL 323 (371)
Q Consensus 307 ~~a~~~g~i~~~~~~~l 323 (371)
..+++ .+++.++..
T Consensus 136 ~~al~---~~~~~~~a~ 149 (378)
T PF05684_consen 136 AEALG---VSDSLFAAA 149 (378)
T ss_pred HHHHC---CCHHHHHHH
Confidence 44443 256666544
No 72
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=70.25 E-value=71 Score=30.18 Aligned_cols=103 Identities=15% Similarity=0.161 Sum_probs=51.3
Q ss_pred HHHHHHHHHhccCc-chhHHHHHhhhcHHH-HHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 017470 205 ELGSFMAGVMISTT-DFAKHTLDQVEPIRN-LFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFG 282 (371)
Q Consensus 205 ~lgaf~aGl~~~~~-~~~~~~~~~l~~i~~-~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~ 282 (371)
.+-.+.+|+.+++. |...+..+++..+.. .+.-+.+...+.+-+ .+....+......++....-+..++..++..|
T Consensus 143 v~vPl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~liv~~~~~~~~~--~i~~~~~~~~~~~~ll~~~~~~~g~~~a~~~~ 220 (286)
T TIGR00841 143 VLIPVSIGMLVKHKLPQIAKIILKVGLISVFLLSVIIAVVGGINVE--NLATIGPLLLLVGILLPLAGFLLGYLLAKLAG 220 (286)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhCchHHHHHHHHHHHHHHHhhHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34456666666653 221222233444443 222222333333332 23332222222333344556677778888888
Q ss_pred CChHHHHHHHHHhhhHH-HHHHHHHHHH
Q 017470 283 YSMRTSFLVGVSLAQIG-EFAFVLLSRA 309 (371)
Q Consensus 283 ~~~~~~~~~g~~l~~~g-~~~li~a~~a 309 (371)
.+.+|+..++...+.|= ..++.++...
T Consensus 221 l~~~~~~t~~~~~g~qN~~lal~la~~~ 248 (286)
T TIGR00841 221 LPWARCRTISIEVGMQNSQLCSTIAQLS 248 (286)
T ss_pred CCHhhheeeeeeeecccHHHHHHHHHHh
Confidence 88888777666544443 4566655543
No 73
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=69.05 E-value=1.1e+02 Score=29.47 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhhHH-HHHHHHHHHHhhCCCCc-hHHHHHHHHHHHHHHHHhHHHHhhh
Q 017470 270 KTAVGTIVTKLFGYSMRTSFLVGVSLAQIG-EFAFVLLSRASNLHLVE-GKMYLLLLGTTALSLVTTPLLFKLI 341 (371)
Q Consensus 270 K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g-~~~li~a~~a~~~g~i~-~~~~~~lv~~vils~l~~p~~~~~~ 341 (371)
-+..+|..+|..|+++.|+..+.+.-+.|. ..+..++.. + .+ ++..-........=.+.++++.+++
T Consensus 236 g~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~-f----~~~~~~alP~aif~~~q~~~~a~la~~~ 304 (319)
T COG0385 236 GLLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAA-F----FGNPLMALPLAIFSVWQNMSGAVLAGLY 304 (319)
T ss_pred HHHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHh-c----CCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 366788889999999999887766544443 234444433 2 12 3333333334444456677777665
No 74
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=68.15 E-value=45 Score=32.23 Aligned_cols=108 Identities=16% Similarity=0.129 Sum_probs=59.0
Q ss_pred HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHhhhHHHHHHHHH
Q 017470 233 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGY------SMRTSFLVGVSLAQIGEFAFVLL 306 (371)
Q Consensus 233 ~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~------~~~~~~~~g~~l~~~g~~~li~a 306 (371)
+++=|+-|.-+|...|++.+..++...+ +-..+-++-+. ++..+...|. +.+|+..+|..=..-|-.++.++
T Consensus 63 ~l~P~LIFlGIGAmtDFgpllanP~~~l-lGaaAQ~GiF~-t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s 140 (354)
T TIGR01109 63 GIAPLLIFMGIGALTDFGPLLANPRTLL-LGAAAQFGIFA-TVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLS 140 (354)
T ss_pred chHHHHHHHhccHHhhhHHHHhChHHHH-HHHHHHhhHHH-HHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhH
Confidence 6999999999999999998766553221 11122233332 3344445566 66887777764344444444443
Q ss_pred HHHhhCCCCchHHHHHHHH----HHHHHHHHhHHHHhhhhhhhhhh
Q 017470 307 SRASNLHLVEGKMYLLLLG----TTALSLVTTPLLFKLIPNVMNLG 348 (371)
Q Consensus 307 ~~a~~~g~i~~~~~~~lv~----~vils~l~~p~~~~~~~~~~~~~ 348 (371)
+. +.++.+..+.. +..+.=++=|++.|.....+.|+
T Consensus 141 ~~------lap~Llg~IaVAAYsYMaLvPiiqPpimklLttkkeR~ 180 (354)
T TIGR01109 141 GK------LAPELLAAIAVAAYSYMALVPIIQPPIMKALTSEKERK 180 (354)
T ss_pred hh------hhhHHHHHHHHHHHHHHHHHhcccchHHHhhcChHHhc
Confidence 31 23444443321 12222345678888875544433
No 75
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=67.91 E-value=1.2e+02 Score=29.25 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=71.1
Q ss_pred HHHHHHHHhccCcc-hhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017470 206 LGSFMAGVMISTTD-FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH---VDILLASVILVIIVKTAVGTIVTKLF 281 (371)
Q Consensus 206 lgaf~aGl~~~~~~-~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~---~~~~~~~~~~~~~~K~~~~~~~~~~~ 281 (371)
+|+.++..+.+... .+-+..+ .+.+....+-=+.+|.+++.+.+... +.......+.....-...+++..|..
T Consensus 3 lG~~ia~~~~~~~~~~~~~~p~---~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~ 79 (318)
T PF05145_consen 3 LGPMIAVIIAALFGPLPLRVPR---RLRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRIS 79 (318)
T ss_pred hHHHHHHHHHHHhCCCccCCCH---HHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45565555555332 1111111 13345555666789999999877543 33333445556677778888888999
Q ss_pred CCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHH-HHHHHHHHHhHHHHhhhh
Q 017470 282 GYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLL-GTTALSLVTTPLLFKLIP 342 (371)
Q Consensus 282 ~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv-~~vils~l~~p~~~~~~~ 342 (371)
++|..++++-+. |-|--+.+. ++.+.|- |...-...- .=+++-....|.+.++..
T Consensus 80 ~~d~~TA~~~~~---PGg~s~m~~--la~~~ga-d~~~Va~~q~lRl~~Vv~~vP~i~~~~~ 135 (318)
T PF05145_consen 80 GLDRATAFFASM---PGGLSEMVA--LAEEYGA-DTRRVALVQSLRLLLVVLLVPFIASLLG 135 (318)
T ss_pred CCChhHHHHHcC---CccHHHHHH--HHHHcCC-ChhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999888776654 666555543 3455554 332222211 111122334677777663
No 76
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=62.70 E-value=1.5e+02 Score=28.50 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=30.4
Q ss_pred HHHHHHHHHhccCcchh-HHHHHhhhcHHHHHhHHHHHHhccccchhhhhH
Q 017470 205 ELGSFMAGVMISTTDFA-KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN 254 (371)
Q Consensus 205 ~lgaf~aGl~~~~~~~~-~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~ 254 (371)
++.+...|...|..... +.+ +.|......+.+-|...|++++.+++.+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~--~~~~~~~~~v~~iFf~~Gl~L~~~~l~~ 55 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVI--KPEYVIKYGVALIFFISGLSLPTEELKA 55 (313)
T ss_pred HHHHHHHHHHcCcccccCCcc--chhhhHHHHHHHHHHHHcCCCCHHHHHH
Confidence 45667777777775221 111 1123444557777888999999998865
No 77
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=60.69 E-value=1.2e+02 Score=29.59 Aligned_cols=132 Identities=18% Similarity=0.158 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhccCcc--hh----HHHHHhhhcHHHHHhHHHHHHhccccchhhhhH--HHHHHHHHHHHHHHHHHHHH
Q 017470 203 SLELGSFMAGVMISTTD--FA----KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN--HVDILLASVILVIIVKTAVG 274 (371)
Q Consensus 203 s~~lgaf~aGl~~~~~~--~~----~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~--~~~~~~~~~~~~~~~K~~~~ 274 (371)
+|.+=+.++|++++-.+ .. +-+.+.++.+.+...|+=.+.+|..+....... .+......++.+++.-++.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 323 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIG 323 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 67777777788877653 22 456677777888999999999999887543321 11222234556667777777
Q ss_pred HHHHHHhCCChHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHH
Q 017470 275 TIVTKLFGYSMRTSFLVGV-SLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLL 337 (371)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~-~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~ 337 (371)
+...+..+.+.......-+ .-.|-+....++ +.++|.-+++.-..+.+..+++.+..|+.
T Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~---a~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 384 (385)
T PF03547_consen 324 IGIVFLLGLDGDMARVLILQAAMPTAINSFVI---ASLYGLDEEEASSIVFWSTLLSIPTLPLW 384 (385)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCCchHHHHHH---HHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777765443221111 123444333333 33455444455455556666666666653
No 78
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=60.27 E-value=1.6e+02 Score=28.47 Aligned_cols=55 Identities=7% Similarity=0.033 Sum_probs=36.9
Q ss_pred HHHHHHHHH-HhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHH
Q 017470 271 TAVGTIVTK-LFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLG 325 (371)
Q Consensus 271 ~~~~~~~~~-~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~ 325 (371)
++.++...| +.|.+..|+..++---+..+.++++.+..-++..-++.|-|.....
T Consensus 68 Pl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~ 123 (327)
T PF05982_consen 68 PLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALL 123 (327)
T ss_pred HHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHH
Confidence 344444444 5799999999998877788877777776555554456665555433
No 79
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=60.01 E-value=1.9e+02 Score=28.98 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=64.0
Q ss_pred hCchHHHHHHHHHHhccCcchhHHHHHhhhc------HHHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 017470 200 LGLSLELGSFMAGVMISTTDFAKHTLDQVEP------IRNLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAV 273 (371)
Q Consensus 200 ~g~s~~lgaf~aGl~~~~~~~~~~~~~~l~~------i~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~ 273 (371)
+|...++.-|.....+-..-..++..+..+. +.++++...-+-.=+..|-..+.+...-.+..++...++-.+.
T Consensus 58 iGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~ 137 (414)
T PF03390_consen 58 IGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLL 137 (414)
T ss_pred CChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443222233333333 3345554443333334455556554332333333344455555
Q ss_pred HHHHHHHhCCChHHHHH-HHHHhhhHHH-HHHHHHHHHh--hCCCCchHHHHHHHHHHHHHHHHh
Q 017470 274 GTIVTKLFGYSMRTSFL-VGVSLAQIGE-FAFVLLSRAS--NLHLVEGKMYLLLLGTTALSLVTT 334 (371)
Q Consensus 274 ~~~~~~~~~~~~~~~~~-~g~~l~~~g~-~~li~a~~a~--~~g~i~~~~~~~lv~~vils~l~~ 334 (371)
+.+...+.|++.+|+.. +.+=...-|. -+.+=.+..+ -.|.-.++.++.++..+.+..++.
T Consensus 138 g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~A 202 (414)
T PF03390_consen 138 GGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFA 202 (414)
T ss_pred HHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 66677788999999853 3332222121 1222122222 235555677787776666544433
No 80
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=59.28 E-value=2.3e+02 Score=29.65 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=52.1
Q ss_pred chHHHHHHHHHHhccCcchhHHHHHhhh-cHHHHHhHHHHHHhccccchhhhhH---HHHHHHHHHHHHHHHHHHHHHHH
Q 017470 202 LSLELGSFMAGVMISTTDFAKHTLDQVE-PIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIV 277 (371)
Q Consensus 202 ~s~~lgaf~aGl~~~~~~~~~~~~~~l~-~i~~~f~plFF~~~G~~l~l~~l~~---~~~~~~~~~~~~~~~K~~~~~~~ 277 (371)
+-+.-|++++|++++..... +. .+++++..+|-..+|++.-+.-+.. ...-...+.++.++.-.+.++..
T Consensus 35 LG~~~gvLfvgl~~G~~g~~------i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~ 108 (562)
T TIGR03802 35 LGGVAGSLIVAVLIGQLGIQ------IDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAVSGLITVYAL 108 (562)
T ss_pred cchHHHHHHHHHHHHhcCCC------CChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 33356789999999975321 22 2567999999999999998765432 21112233333444456667777
Q ss_pred HHHhCCChHHH
Q 017470 278 TKLFGYSMRTS 288 (371)
Q Consensus 278 ~~~~~~~~~~~ 288 (371)
.+.+|++...+
T Consensus 109 ~~~~g~~~~~~ 119 (562)
T TIGR03802 109 AKIFGLDKGTA 119 (562)
T ss_pred HHHhCCCHHHH
Confidence 88899986653
No 81
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=57.43 E-value=1.8e+02 Score=27.86 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=26.5
Q ss_pred HHHHHhhhcHHHHHhHHHHHHhccccchhhhhHH
Q 017470 222 KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 255 (371)
Q Consensus 222 ~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~ 255 (371)
++..+.++.+..++.-+=|..+|+++|++.+.+.
T Consensus 264 ~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~l~~~ 297 (305)
T PF03601_consen 264 AAVVSALKSLSKWLFALAMAAIGLSTNFKDLKQV 297 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHhc
Confidence 4556667777778888888999999999888653
No 82
>PRK04972 putative transporter; Provisional
Probab=55.34 E-value=2.7e+02 Score=29.16 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 204 LELGSFMAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTKL 280 (371)
Q Consensus 204 ~~lgaf~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~---~~~~~~~~~~~~~~~K~~~~~~~~~~ 280 (371)
..-|++++|++++..... .-..++++.+.+|-..+|++--..-+.. ......++.++.++.-.+.++...+.
T Consensus 39 ~~~g~L~vgl~~g~~~~~-----~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 113 (558)
T PRK04972 39 NSIGVLVVSLLLGQQHFS-----INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKL 113 (558)
T ss_pred cchHHHHHHHHHHhCCCC-----CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778888888765321 1122457999999999999997765432 21112222233334445556667778
Q ss_pred hCCChHH
Q 017470 281 FGYSMRT 287 (371)
Q Consensus 281 ~~~~~~~ 287 (371)
+|++...
T Consensus 114 ~~~~~~~ 120 (558)
T PRK04972 114 FGWDIGL 120 (558)
T ss_pred hCCCHHH
Confidence 8888664
No 83
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=49.54 E-value=2.8e+02 Score=29.02 Aligned_cols=73 Identities=10% Similarity=0.178 Sum_probs=46.1
Q ss_pred HHHHhHHHHHHhccccchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHH---H-----HhCCChHHHHHHHHHhhhHHHHH
Q 017470 232 RNLFAALFLSSIGMLIHVHFLWNHVDILLASVILV-IIVKTAVGTIVT---K-----LFGYSMRTSFLVGVSLAQIGEFA 302 (371)
Q Consensus 232 ~~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~-~~~K~~~~~~~~---~-----~~~~~~~~~~~~g~~l~~~g~~~ 302 (371)
-.+++|.--.-.|.++|...+..++..++.+.... ++.=.+.+...- . ..+.++.+++..|..+++..-++
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVA 148 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVA 148 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHH
Confidence 45788888889999999999988765443332222 222222222111 1 13568999999999888887555
Q ss_pred HH
Q 017470 303 FV 304 (371)
Q Consensus 303 li 304 (371)
..
T Consensus 149 Vl 150 (559)
T TIGR00840 149 VL 150 (559)
T ss_pred HH
Confidence 44
No 84
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=46.12 E-value=79 Score=31.17 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=59.4
Q ss_pred HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHhhhHHHHHHHHHH
Q 017470 233 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL-----FGYSMRTSFLVGVSLAQIGEFAFVLLS 307 (371)
Q Consensus 233 ~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~g~~~li~a~ 307 (371)
+++=|+-|.-+|...|+..+..++...+ +-..+-.+-+.....+..+ .|.+.+|+..+|..=+.-|-.++.+++
T Consensus 134 gi~P~LIF~GIGAMtDFgpLlanP~~~l-lGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15477 134 GVAPLVIFMGVGAMTDFGPLLANPRTLL-LGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred chHHHHHHHhccHHhcchHHhhCHHHHH-HHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 5888999999999999998766553221 1112223333322222222 278889988887754444544444443
Q ss_pred HHhhCCCCchHHHHHHHH----HHHHHHHHhHHHHhhhhhhhhhh
Q 017470 308 RASNLHLVEGKMYLLLLG----TTALSLVTTPLLFKLIPNVMNLG 348 (371)
Q Consensus 308 ~a~~~g~i~~~~~~~lv~----~vils~l~~p~~~~~~~~~~~~~ 348 (371)
. +.++....+.. +..+.=++=|++.|.....++|+
T Consensus 213 k------LAP~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~ 251 (433)
T PRK15477 213 K------LAPELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERK 251 (433)
T ss_pred h------hhhHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhC
Confidence 2 23444433321 12222345677788875544433
No 85
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=46.07 E-value=79 Score=31.16 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=59.4
Q ss_pred HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHhhhHHHHHHHHHH
Q 017470 233 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL-----FGYSMRTSFLVGVSLAQIGEFAFVLLS 307 (371)
Q Consensus 233 ~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~g~~~li~a~ 307 (371)
+++=|+-|.-+|...|+..+..++...+ +-..+-.+-+.....+..+ .|.+.+|+..+|..=..-|-.++.+++
T Consensus 134 gi~P~LIF~GIGAMtDFgpLlanP~~~l-lGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15476 134 GVAPLVIFMGVGAMTDFGPLLANPRTLL-LGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred chHHHHHHHhccHHhcchHHhhCHHHHH-HHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 5888999999999999998766553221 1112223333322222222 278889988887754444544444443
Q ss_pred HHhhCCCCchHHHHHHHH----HHHHHHHHhHHHHhhhhhhhhhh
Q 017470 308 RASNLHLVEGKMYLLLLG----TTALSLVTTPLLFKLIPNVMNLG 348 (371)
Q Consensus 308 ~a~~~g~i~~~~~~~lv~----~vils~l~~p~~~~~~~~~~~~~ 348 (371)
. +.++....+.. +..+.=++=|++.|.....++|+
T Consensus 213 k------LAP~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~ 251 (433)
T PRK15476 213 K------LAPELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERK 251 (433)
T ss_pred h------hhhHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhC
Confidence 2 23444433321 12222345677788875544433
No 86
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=45.94 E-value=80 Score=31.12 Aligned_cols=109 Identities=13% Similarity=0.094 Sum_probs=59.3
Q ss_pred HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHhhhHHHHHHHHHH
Q 017470 233 NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL-----FGYSMRTSFLVGVSLAQIGEFAFVLLS 307 (371)
Q Consensus 233 ~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~g~~~li~a~ 307 (371)
+++=|+-|.-+|...|+..+..++...+ +-..+-++-+.....+..+ .|.+.+|+..+|..=..-|-.++.+++
T Consensus 134 gi~P~LIF~GIGAMtDFgpLlanP~~~l-lGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15475 134 GVAPLVIFMGVGAMTDFGPLLANPRTLL-LGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred chHHHHHHHhccHHhcchHHhhCHHHHH-HHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 5888999999999999998766553221 1112223333322222222 278889988887754444544444443
Q ss_pred HHhhCCCCchHHHHHHHH----HHHHHHHHhHHHHhhhhhhhhhh
Q 017470 308 RASNLHLVEGKMYLLLLG----TTALSLVTTPLLFKLIPNVMNLG 348 (371)
Q Consensus 308 ~a~~~g~i~~~~~~~lv~----~vils~l~~p~~~~~~~~~~~~~ 348 (371)
. +.++....+.. +..+.=++=|++.|.....++|+
T Consensus 213 k------LAP~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~ 251 (433)
T PRK15475 213 K------LAPELLGAIAVAAYSYMALVPLIQPPIMKALTTETERK 251 (433)
T ss_pred h------hhhHhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhC
Confidence 2 23444433321 11222345677788775544433
No 87
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=44.96 E-value=3.1e+02 Score=27.57 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=67.5
Q ss_pred HHHHHhCchHHHHHHHHHHhccCcc-hhHHHH---HhhhcH-HHHHhHHHHHHhccc-cchhhhhHHHH-HHHHHHHHHH
Q 017470 195 WCSDKLGLSLELGSFMAGVMISTTD-FAKHTL---DQVEPI-RNLFAALFLSSIGML-IHVHFLWNHVD-ILLASVILVI 267 (371)
Q Consensus 195 ~ia~~~g~s~~lgaf~aGl~~~~~~-~~~~~~---~~l~~i-~~~f~plFF~~~G~~-l~l~~l~~~~~-~~~~~~~~~~ 267 (371)
.+...+++|+..-..+.=.++.-.. -.++++ ++...+ ..-+.+..-+-+|.. +|++++.+... ..+...+..+
T Consensus 264 ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~V 343 (414)
T PF03390_consen 264 LLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATV 343 (414)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHH
Confidence 4466678888776666655555431 122333 344444 345555566678888 89988765432 2334444556
Q ss_pred HHHHHHHHHHHHHhCCChHHH-HHHHHHhhhHHHHH
Q 017470 268 IVKTAVGTIVTKLFGYSMRTS-FLVGVSLAQIGEFA 302 (371)
Q Consensus 268 ~~K~~~~~~~~~~~~~~~~~~-~~~g~~l~~~g~~~ 302 (371)
++-.+++++..+..|+-+-|+ +..|++++.+|.-+
T Consensus 344 l~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtG 379 (414)
T PF03390_consen 344 LGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTG 379 (414)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCC
Confidence 777788888889888766664 66777888888533
No 88
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=42.67 E-value=2.1e+02 Score=28.37 Aligned_cols=21 Identities=24% Similarity=0.418 Sum_probs=17.8
Q ss_pred HHHHHhHHHHHHhccccchhh
Q 017470 231 IRNLFAALFLSSIGMLIHVHF 251 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~ 251 (371)
++|-++.+||..+|+++.-+.
T Consensus 60 iNDgLMaiFFf~vGLEiKrE~ 80 (383)
T PRK14854 60 INDGLMAIYFLYIGLEIKREI 80 (383)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 358999999999999997654
No 89
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=39.13 E-value=3.9e+02 Score=26.28 Aligned_cols=151 Identities=16% Similarity=0.202 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHhccCcc-hhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhHHHH--
Q 017470 183 QLAAVAFCLLSAWCSDKLGLSL--ELGSFMAGVMISTTD-FAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNHVD-- 257 (371)
Q Consensus 183 ~~~~l~~~~~~~~ia~~~g~s~--~lgaf~aGl~~~~~~-~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~~~-- 257 (371)
....+...+..+.+...+++.. ++|+++.|..+.-.- ...++-+-+ ..+-..+.=..+|.++|-+.+....-
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl---~~va~~~iG~~IG~~f~~~~l~~~~r~~ 266 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWL---LAVAQALIGALIGSRFDRSILREAKRLL 266 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHH---HHHHHHHHHHHHcccccHHHHHHhHhhc
Confidence 3445555566667777777654 888999888887653 111111111 23444455678999999887754322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHH-HHHHHHHhH
Q 017470 258 -ILLASVILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGT-TALSLVTTP 335 (371)
Q Consensus 258 -~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~-vils~l~~p 335 (371)
......+..+..-...+++..+..+.++.++ +++ .+|-|.-++.....+. | -|...-...-.. .++=..+.|
T Consensus 267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta-~La--~sPGGl~~ma~~A~~l--~-ad~a~V~a~q~lRll~il~i~p 340 (352)
T COG3180 267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTA-YLA--TSPGGLDTMAAIAAAL--G-ADPAFVMALQVLRLLFILLLGP 340 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHH--cCCCcHHHHHHHHHHc--C-CChHHHHHHHHHHHHHHHHHHH
Confidence 1223333445555666777778888887764 344 4687765555544443 3 233222222111 111122348
Q ss_pred HHHhhhh
Q 017470 336 LLFKLIP 342 (371)
Q Consensus 336 ~~~~~~~ 342 (371)
.+.|+..
T Consensus 341 ~l~r~l~ 347 (352)
T COG3180 341 ALARFLS 347 (352)
T ss_pred HHHHHHH
Confidence 8888874
No 90
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=38.55 E-value=1.3e+02 Score=25.72 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCcchh----HHHHH-hhhcHHHHHhHHHHHHhccccchhhhh---HHH--HHHHHHHHHHHHHHHHHH
Q 017470 205 ELGSFMAGVMISTTDFA----KHTLD-QVEPIRNLFAALFLSSIGMLIHVHFLW---NHV--DILLASVILVIIVKTAVG 274 (371)
Q Consensus 205 ~lgaf~aGl~~~~~~~~----~~~~~-~l~~i~~~f~plFF~~~G~~l~l~~l~---~~~--~~~~~~~~~~~~~K~~~~ 274 (371)
.-|++++|+++++.... ..+.+ ..+.++++-+.+|...+|.+--...+. +.. .......++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 45788888888875322 12222 222356899999999999998765433 222 122222333344445566
Q ss_pred HHHHHHhCCChHHHHHHHH
Q 017470 275 TIVTKLFGYSMRTSFLVGV 293 (371)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~ 293 (371)
+...+..|+++.+ ..|.
T Consensus 104 ~~~~~~~~~~~~~--~~G~ 120 (154)
T TIGR01625 104 VALIKLLRINYAL--TAGM 120 (154)
T ss_pred HHHHHHhCCCHHH--HHHH
Confidence 6666778888653 4444
No 91
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=37.60 E-value=2.3e+02 Score=23.26 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhh
Q 017470 323 LLGTTALSLVTTPLLFKLIPNVM 345 (371)
Q Consensus 323 lv~~vils~l~~p~~~~~~~~~~ 345 (371)
.++.+++-.+..|.......|.+
T Consensus 76 ~lli~~Fl~lTaPvaaH~iaRAA 98 (120)
T PRK12671 76 EVLIGVFVVVTTPVTLMLLSRAA 98 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677788888877654
No 92
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=37.03 E-value=2.4e+02 Score=28.47 Aligned_cols=22 Identities=23% Similarity=0.458 Sum_probs=18.5
Q ss_pred HHHHHhHHHHHHhccccchhhh
Q 017470 231 IRNLFAALFLSSIGMLIHVHFL 252 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~l 252 (371)
++|-++.+||..+|+++.-+.+
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l 88 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELL 88 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999976544
No 93
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=36.85 E-value=4.8e+02 Score=26.70 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHhCchHHHHHHHHHHhccCcchhH-HHH-Hhhhc-HHHHHhHHHHHHhccccchhhhhHHHHHHH-HHHHHHHHH
Q 017470 194 AWCSDKLGLSLELGSFMAGVMISTTDFAK-HTL-DQVEP-IRNLFAALFLSSIGMLIHVHFLWNHVDILL-ASVILVIIV 269 (371)
Q Consensus 194 ~~ia~~~g~s~~lgaf~aGl~~~~~~~~~-~~~-~~l~~-i~~~f~plFF~~~G~~l~l~~l~~~~~~~~-~~~~~~~~~ 269 (371)
+-++..+|....+=-...|++.....-.. +.. ..+.. +.++.+.+.-.--|+..+++.+....+..+ ...+.+++.
T Consensus 23 s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~T 102 (574)
T COG3263 23 SLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLIT 102 (574)
T ss_pred HHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHH
Confidence 33444555544444444555555431110 000 11111 234444444445677777776654322222 233334455
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhhHH
Q 017470 270 KTAVGTIVTKLFGYSMRTSFLVGVSLAQIG 299 (371)
Q Consensus 270 K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g 299 (371)
-.+.+..+.+..+.+|-|++.+|...+..-
T Consensus 103 s~Ltg~aA~~ll~l~wle~~LiGAiVgSTD 132 (574)
T COG3263 103 SGLTGVAAAYLLNLDWLEGLLIGAIVGSTD 132 (574)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhhcccc
Confidence 556666777889999999999998665543
No 94
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=36.41 E-value=2.5e+02 Score=26.70 Aligned_cols=104 Identities=13% Similarity=0.007 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhc-cCc-chhHHHHHhhhcHH-HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 017470 204 LELGSFMAGVMI-STT-DFAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTK- 279 (371)
Q Consensus 204 ~~lgaf~aGl~~-~~~-~~~~~~~~~l~~i~-~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~- 279 (371)
|++.....|... .+. ..+++-.+.+..+. ++..|..-+..-.+.+.+...................-++.++...+
T Consensus 12 pv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 91 (321)
T TIGR00946 12 PILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYALIWLITKP 91 (321)
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555567777777 454 24455566777764 89999887766666555311111111112222223333444455555
Q ss_pred HhCCChHHHHHH--HHHhhhHHHHHHHHHH
Q 017470 280 LFGYSMRTSFLV--GVSLAQIGEFAFVLLS 307 (371)
Q Consensus 280 ~~~~~~~~~~~~--g~~l~~~g~~~li~a~ 307 (371)
..+.+.+++... +...+.-|-+++-++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~ 121 (321)
T TIGR00946 92 LFKADYGKLSGFLLVSALPNTAFIGYPLLL 121 (321)
T ss_pred HHhcccchhhHHHHHhhhccceeehHHHHH
Confidence 556565554333 3333344444444443
No 95
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=35.08 E-value=4.9e+02 Score=26.28 Aligned_cols=20 Identities=15% Similarity=0.320 Sum_probs=17.0
Q ss_pred HHHHHhHHHHHHhccccchh
Q 017470 231 IRNLFAALFLSSIGMLIHVH 250 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~ 250 (371)
++|-++.+||..+|+++.-+
T Consensus 66 iNDgLMaiFFf~vGLEiKrE 85 (423)
T PRK14853 66 AADGLLAIFFFVVGLELKRE 85 (423)
T ss_pred HHHhhHHHHHHHHHHHHhHH
Confidence 46899999999999999543
No 96
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=34.55 E-value=3.4e+02 Score=25.36 Aligned_cols=80 Identities=14% Similarity=0.078 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHHHHHHHHhhCCC-CchHHHHHHHHHHHHHHHHhHHHHhhhhhh
Q 017470 266 VIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAFVLLSRASNLHL-VEGKMYLLLLGTTALSLVTTPLLFKLIPNV 344 (371)
Q Consensus 266 ~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~li~a~~a~~~g~-i~~~~~~~lv~~vils~l~~p~~~~~~~~~ 344 (371)
--++|-..+..++...|++++++...++.|+---..+..+....-..+. .++..........+.+.+++=+..++.-++
T Consensus 160 PGiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~~ 239 (259)
T PF02673_consen 160 PGISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLRF 239 (259)
T ss_pred CCcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999887433333333332211111 333333344444445555555555555443
Q ss_pred h
Q 017470 345 M 345 (371)
Q Consensus 345 ~ 345 (371)
.
T Consensus 240 ~ 240 (259)
T PF02673_consen 240 L 240 (259)
T ss_pred H
Confidence 3
No 97
>PRK09903 putative transporter YfdV; Provisional
Probab=34.00 E-value=4.2e+02 Score=25.16 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhccCcc-hhHHHHHhhhcHH-HHHhHHHHHHhccccchhhhh
Q 017470 204 LELGSFMAGVMISTTD-FAKHTLDQVEPIR-NLFAALFLSSIGMLIHVHFLW 253 (371)
Q Consensus 204 ~~lgaf~aGl~~~~~~-~~~~~~~~l~~i~-~~f~plFF~~~G~~l~l~~l~ 253 (371)
|+..-...|...++.+ ..++-.+.++.+. ++..|..-+..-.+.|.+...
T Consensus 11 pif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~ 62 (314)
T PRK09903 11 PIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIF 62 (314)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4455566677777653 4455566777765 788998877666777765554
No 98
>PRK04972 putative transporter; Provisional
Probab=32.20 E-value=5e+02 Score=27.16 Aligned_cols=97 Identities=13% Similarity=0.200 Sum_probs=53.0
Q ss_pred CchHHHHHHHHHHhccCcchhHHHHHhhh-----cHHHHHhHHHHHHhccccchhhh---hHHH-HHHHHHHHHHHHHHH
Q 017470 201 GLSLELGSFMAGVMISTTDFAKHTLDQVE-----PIRNLFAALFLSSIGMLIHVHFL---WNHV-DILLASVILVIIVKT 271 (371)
Q Consensus 201 g~s~~lgaf~aGl~~~~~~~~~~~~~~l~-----~i~~~f~plFF~~~G~~l~l~~l---~~~~-~~~~~~~~~~~~~K~ 271 (371)
++...-|+.++|++++..++.....-++- .++++=+-+|...+|.+--...+ ..+. .+....+++.++.-.
T Consensus 409 ~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~ 488 (558)
T PRK04972 409 GIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVV 488 (558)
T ss_pred eccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33345579999999998543322222222 25677788888888888765433 2222 222222333333344
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhhHH
Q 017470 272 AVGTIVTKLFGYSMRTSFLVGVSLAQIG 299 (371)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g 299 (371)
+..+++.+..|+++.+ ..|..-..+.
T Consensus 489 ~~~~~~~~~~k~~~~~--~~G~~aG~~t 514 (558)
T PRK04972 489 ICFLFGAYVLRMNRAL--LFGAIMGART 514 (558)
T ss_pred HHHHHHHHHHcCCHHH--HHHHHhCCCC
Confidence 4455555677888763 4454333333
No 99
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=31.30 E-value=2.6e+02 Score=27.81 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHhccccchhhh
Q 017470 231 IRNLFAALFLSSIGMLIHVHFL 252 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~l 252 (371)
++|.++.+||..+|+++.-+.+
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~ 84 (388)
T PRK09561 63 INDGLMAVFFLLIGLEVKRELL 84 (388)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999976543
No 100
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=29.91 E-value=3e+02 Score=26.56 Aligned_cols=108 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCcchh----HHHHHhhhcHHHHHhH---HHHHHhccccchhhhhHH---HHHHHHHHHHHHHHHHHHH
Q 017470 205 ELGSFMAGVMISTTDFA----KHTLDQVEPIRNLFAA---LFLSSIGMLIHVHFLWNH---VDILLASVILVIIVKTAVG 274 (371)
Q Consensus 205 ~lgaf~aGl~~~~~~~~----~~~~~~l~~i~~~f~p---lFF~~~G~~l~l~~l~~~---~~~~~~~~~~~~~~K~~~~ 274 (371)
.+-..++|+.+++...+ +...|+..+..+.+.. .+.+..-...+-+.+.++ .......+++....-+..+
T Consensus 184 v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg 263 (328)
T TIGR00832 184 LGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLT 263 (328)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhCCChHHHHHHHHHhhhHH-HHHHHHHHHHhhC
Q 017470 275 TIVTKLFGYSMRTSFLVGVSLAQIG-EFAFVLLSRASNL 312 (371)
Q Consensus 275 ~~~~~~~~~~~~~~~~~g~~l~~~g-~~~li~a~~a~~~ 312 (371)
+..+|..|.+.+|+..+.+.-+.|- ..++.++..-++.
T Consensus 264 ~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~~~f~~ 302 (328)
T TIGR00832 264 FALAKKLGLPYSITAPAAFTGASNNFELAIAVAISLFGL 302 (328)
T ss_pred HHHHHHhCcChhhhhhheehhhhhhHHHHHHHHHHhCCC
No 101
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=29.00 E-value=5.5e+02 Score=25.00 Aligned_cols=34 Identities=12% Similarity=0.292 Sum_probs=26.9
Q ss_pred HHHHHhhhcHHHHHhHHHHHHhccccchhhhhHH
Q 017470 222 KHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWNH 255 (371)
Q Consensus 222 ~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~~ 255 (371)
++..+.++.+..++.-+=+..+|++.|++.+.+.
T Consensus 272 ~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~l~~~ 305 (335)
T TIGR00698 272 GEVVQALVPLDTFLLATAMAALGLTTNVSAVKKA 305 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHc
Confidence 3455666777778888889999999999998754
No 102
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=28.72 E-value=2.8e+02 Score=27.59 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.9
Q ss_pred HHHHHhHHHHHHhccccchhh
Q 017470 231 IRNLFAALFLSSIGMLIHVHF 251 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~ 251 (371)
++|.++.+||..+|+++.-+.
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~ 83 (389)
T PRK09560 63 INDGLMAVFFLLVGLEIKREL 83 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999997654
No 103
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=28.23 E-value=4e+02 Score=27.02 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=18.2
Q ss_pred HHHHHhHHHHHHhccccchhhh
Q 017470 231 IRNLFAALFLSSIGMLIHVHFL 252 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~l 252 (371)
++|.++.+||..+|+++.-+.+
T Consensus 72 INDgLMaiFFf~VGLEIKrE~~ 93 (438)
T PRK14856 72 IDDVLMALFFLMIGLEIKRELL 93 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999976543
No 104
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=27.66 E-value=92 Score=26.53 Aligned_cols=32 Identities=34% Similarity=0.723 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHcCCc--hHHHHHHHHHHhC
Q 017470 23 VVIVSAAIGGIIFSCLGQP--VIVGYLLAGSIIG 54 (371)
Q Consensus 23 lil~~a~~~~~l~~rl~~P--~ivg~il~GiilG 54 (371)
+.+.++...+.+++++|+| ..+|.++.+.++.
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~ 35 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLS 35 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 3566778889999999998 6677777777765
No 105
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=26.72 E-value=1.8e+02 Score=20.70 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHhCcC
Q 017470 17 LISDLVVVIVSAAIGGIIFSCL---GQPVIVGYLLAGSIIGPG 56 (371)
Q Consensus 17 ~l~~~~lil~~a~~~~~l~~rl---~~P~ivg~il~GiilGp~ 56 (371)
++..++++=+..++..++++|+ |++.----|+.|+++...
T Consensus 13 LitaFa~vG~~m~~S~~lS~~LT~GrihGSAIAI~lGLvLAy~ 55 (60)
T PF03818_consen 13 LITAFAVVGIIMWVSYWLSKKLTRGRIHGSAIAIVLGLVLAYI 55 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 5667788888888888888886 678777788999988643
No 106
>PF12832 MFS_1_like: MFS_1 like family
Probab=26.20 E-value=2.7e+02 Score=20.53 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhc
Q 017470 295 LAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLGILLH 352 (371)
Q Consensus 295 l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~~~~~~~~~~~~ 352 (371)
.++.|.+---+.....+.|.-.+++.-+....-..+.+.+|+.....|+..+++...+
T Consensus 13 f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 13 FAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence 3444444334444444666544454444444444455566666677788777665544
No 107
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only]
Probab=25.63 E-value=8.4e+02 Score=26.00 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHhCcCCccchhhHHHHcCCchHHHHHHH---HHHHhhcHHHHHHH
Q 017470 17 LISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISELVQLCGAKLSEGVFVG---SFLSMSSTAVVVKF 93 (371)
Q Consensus 17 ~l~~~~lil~~a~~~~~l~~rl~~P~ivg~il~GiilGp~~l~~i~~~~ellG~~~~~al~lg---~~ls~TS~~vv~~i 93 (371)
+++.+.+..+.+.++|. |+|+..-||++..+..|.... +|.++..+.++- .+++.-.||+...-
T Consensus 454 l~l~L~lt~~~siiLGM-----GlPttanYIi~atl~aP~l~~--------~gv~~laaH~FVFYfGi~AdiTPPVaLaA 520 (642)
T COG4666 454 LLLLLVLTMVISIILGM-----GLPTTANYIITATLAAPALIE--------LGVPLLAAHFFVFYFGIMADITPPVALAA 520 (642)
T ss_pred HHHHHHHHHHHHHHhcC-----CCCCccHHHHHHHHHHHHHHH--------cCchHHHHHHHHHHHHHHccCCChHHHHH
Confidence 44455555555555554 999999999999999998655 355554332222 34445555566555
Q ss_pred HhhcccccChhHHHHH
Q 017470 94 LVEQNSNNALHGQVTI 109 (371)
Q Consensus 94 l~e~~~~~~~~g~~~l 109 (371)
...-+..+++.=|+-.
T Consensus 521 fAaA~IA~~dp~kTg~ 536 (642)
T COG4666 521 FAAAGIAGADPVKTGF 536 (642)
T ss_pred HHHhhhcCCCcHHHHH
Confidence 5555566665555444
No 108
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=24.88 E-value=4e+02 Score=26.44 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHhccccchhhh
Q 017470 231 IRNLFAALFLSSIGMLIHVHFL 252 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~l 252 (371)
++|-++.+||..+|+++.-+.+
T Consensus 56 iNDgLMaiFFf~vGlEiKrE~~ 77 (373)
T TIGR00773 56 INDGLMAVFFLLIGLEVKRELL 77 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3589999999999999976543
No 109
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=23.82 E-value=5.1e+02 Score=27.21 Aligned_cols=69 Identities=9% Similarity=0.092 Sum_probs=39.6
Q ss_pred HHHhHHHHHHhccccchhhhhHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhHHHHHH
Q 017470 233 NLFAALFLSSIGMLIHVHFLWNHVDILLAS--V-------ILVIIVKTAVGTIVTKLFGYSMRTSFLVGVSLAQIGEFAF 303 (371)
Q Consensus 233 ~~f~plFF~~~G~~l~l~~l~~~~~~~~~~--~-------~~~~~~K~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~l 303 (371)
..++|---.-.|.+++-..++....-+... . ++-...|..+. .....+++++|++..|...+.---++.
T Consensus 103 ~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPVtv 180 (575)
T KOG1965|consen 103 LVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPVTV 180 (575)
T ss_pred HHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCchHH
Confidence 455666556789999988877654322211 1 11112222222 223457899999999987765544443
No 110
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=23.70 E-value=1.4e+02 Score=31.29 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHhccCc-ch-hHH--HHHhhhcHHH-HHhHHHH
Q 017470 188 AFCLLSAWCSDKLGLSLELGSFMAGVMISTT-DF-AKH--TLDQVEPIRN-LFAALFL 240 (371)
Q Consensus 188 ~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~-~~-~~~--~~~~l~~i~~-~f~plFF 240 (371)
+-.+..++++...| ++++|+.++|++.+.. +. ++. +-+.+++++. ++.|++=
T Consensus 300 apg~i~g~~a~~~~-~GFlG~Ilag~lagyv~~~l~K~~~lP~~l~~l~piliiPllt 356 (563)
T PRK10712 300 TPGLIGGMLAVSTG-SGFIGGIIAGFLAGYVAKLISTKLKLPQSMEALKPILIIPLIS 356 (563)
T ss_pred hHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhccCcHHHHhcCceeehhHHH
Confidence 34444555565554 8999999999999975 21 222 4555555553 4466653
No 111
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=22.88 E-value=6.4e+02 Score=23.66 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=25.3
Q ss_pred hHHHHHHhccccchhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 017470 236 AALFLSSIGMLIHVHFLWNHV---DILLASVILVIIVKTAVGTIVTKLFGYS 284 (371)
Q Consensus 236 ~plFF~~~G~~l~l~~l~~~~---~~~~~~~~~~~~~K~~~~~~~~~~~~~~ 284 (371)
+.+-+...|++++.+++.+.. .......+...+.-++.++......+.+
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~ 65 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLP 65 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333445677777776665432 1222333334555555556655655554
No 112
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=22.68 E-value=5.2e+02 Score=25.50 Aligned_cols=49 Identities=16% Similarity=0.485 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCchHHHHHHHHHHhccCc-ch-hH-HHHHhhhcHHH-HHhHHH
Q 017470 190 CLLSAWCSDKLGLSLELGSFMAGVMISTT-DF-AK-HTLDQVEPIRN-LFAALF 239 (371)
Q Consensus 190 ~~~~~~ia~~~g~s~~lgaf~aGl~~~~~-~~-~~-~~~~~l~~i~~-~f~plF 239 (371)
.+..+++++..| ++++|+.++|++.... +. ++ ++.+.++++.. +++|++
T Consensus 89 g~i~G~~a~~~~-~GFlGaii~G~laGy~v~~lkki~lpk~l~~~~piliiP~l 141 (359)
T PRK10478 89 CAIGAWVGNSFG-AGFFGALIAGIIGGIVVHYLKKIPVHKVLRSVMPIFIIPIV 141 (359)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHhcCCchhhHhhcceeeeHHH
Confidence 333444555544 6777777777776653 11 11 45566666664 556654
No 113
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=22.67 E-value=84 Score=31.12 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=17.7
Q ss_pred HHHHHhHHHHHHhccccchhh
Q 017470 231 IRNLFAALFLSSIGMLIHVHF 251 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~ 251 (371)
++|-++.+||..+|+++.-+.
T Consensus 59 iNDgLMaiFFf~vGLEiKrE~ 79 (378)
T PF06965_consen 59 INDGLMAIFFFVVGLEIKREL 79 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 358999999999999997653
No 114
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=21.20 E-value=8.4e+02 Score=24.40 Aligned_cols=76 Identities=18% Similarity=0.257 Sum_probs=45.8
Q ss_pred HhhhcH-H-HHHhHHHHHHhccc-cchhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHhhhHHH
Q 017470 226 DQVEPI-R-NLFAALFLSSIGML-IHVHFLWNHV-DILLASVILVIIVKTAVGTIVTKLFGYSMRTS-FLVGVSLAQIGE 300 (371)
Q Consensus 226 ~~l~~i-~-~~f~plFF~~~G~~-l~l~~l~~~~-~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~-~~~g~~l~~~g~ 300 (371)
.++..+ . ++-.|+-+ .+|.. .|+..+.+.. +--+...+..+++-..++++..|..|+-+-|+ +..|++|+.||.
T Consensus 318 ~~l~~F~sk~~t~~Lm~-giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GG 396 (438)
T COG3493 318 KQLSQFFSKNLTWPLMA-GIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGG 396 (438)
T ss_pred HHHHHHHHHhhHHHHHH-hhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCC
Confidence 345444 2 45555543 45655 6777765432 11223333455667778888889888765565 555599999986
Q ss_pred HH
Q 017470 301 FA 302 (371)
Q Consensus 301 ~~ 302 (371)
.+
T Consensus 397 tG 398 (438)
T COG3493 397 TG 398 (438)
T ss_pred CC
Confidence 44
No 115
>PRK03818 putative transporter; Validated
Probab=21.08 E-value=9.6e+02 Score=25.05 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCcc--hhHHHHHhhhc-HHHHHhHHHHHHhccccchhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 206 LGSFMAGVMISTTD--FAKHTLDQVEP-IRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTK 279 (371)
Q Consensus 206 lgaf~aGl~~~~~~--~~~~~~~~l~~-i~~~f~plFF~~~G~~l~l~~l~~---~~~~~~~~~~~~~~~K~~~~~~~~~ 279 (371)
-|++++|++++... ...++.+.... ++++.+.+|-..+|++.-...+.. ......++.++..+.-.+.++...+
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~ 113 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHK 113 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888731 12222233333 578999999999999998765432 2111222222333334444666677
Q ss_pred HhCCChHH
Q 017470 280 LFGYSMRT 287 (371)
Q Consensus 280 ~~~~~~~~ 287 (371)
.+|+++..
T Consensus 114 ~~~~~~~~ 121 (552)
T PRK03818 114 LFGIPLPV 121 (552)
T ss_pred HhCCCHHH
Confidence 88988664
No 116
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=20.74 E-value=1.2e+02 Score=28.98 Aligned_cols=143 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHhccCcchhHHHHHhhhcHH---HHHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHH
Q 017470 211 AGVMISTTDFAKHTLDQVEPIR---NLFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKLFGYSMRT 287 (371)
Q Consensus 211 aGl~~~~~~~~~~~~~~l~~i~---~~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~ 287 (371)
+|+.....+..+-..+.+-+.. +++=++.|.-+|...|+..+..++...+.-...-+ -...+++.+...|++.+|
T Consensus 59 ag~~~~~~~~~~G~~~~~~~~gi~~~i~PllIFmGvGAmTDFgpllanPktllLGaAAQ~--GIF~t~~~A~~lgf~~~e 136 (375)
T COG1883 59 AGLADTALEGNPGVLALFYKVGIGSGIFPLLIFMGVGAMTDFGPLLANPKTLLLGAAAQF--GIFATVFGALALGFTPKE 136 (375)
T ss_pred chhhcccccCCCcHHHHHHHHHhccCcccHHHHhccchhcccchhhcCcHHHHhhhHHHh--chHHHHHHHHHhCCCHhh
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHH----HHhHHHHhhhhhhhhhhhhhccCCCCCCCCCC
Q 017470 288 SFLVGVSLAQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSL----VTTPLLFKLIPNVMNLGILLHWFPSEGTPRSE 363 (371)
Q Consensus 288 ~~~~g~~l~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~----l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (371)
+..+|..=..-|-.++.+++. +.+|+...+....=--+ ++-|++.|......+|+ .|+.+-|+-++.|
T Consensus 137 AasIgIIGGADGPTaIy~t~~------LAP~Ll~~iAvAAYSYMALVPiIQPpimkaLTt~~ERk--IrM~qlR~Vsk~E 208 (375)
T COG1883 137 AASIGIIGGADGPTAIYLTNK------LAPELLGAIAVAAYSYMALVPIIQPPIMKALTTKEERK--IRMTQLRTVSKRE 208 (375)
T ss_pred hhheeeeccCCCCceEEeccc------cCHHHHHHHHHHHHHHHHHhhhcccHHHHHhcCHHHHH--hhhhccccccchh
Done!