Query 017470
Match_columns 371
No_of_seqs 144 out of 1292
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.8 4E-19 1.4E-23 172.2 9.5 248 69-342 116-384 (388)
2 3zux_A Transporter, ASBTNM; tr 93.9 1.1 3.7E-05 42.2 14.1 132 205-342 175-311 (332)
3 2l0e_A Sodium/hydrogen exchang 90.6 0.035 1.2E-06 33.8 -0.6 29 71-99 2-30 (33)
4 3zux_A Transporter, ASBTNM; tr 83.0 28 0.00095 32.4 14.4 71 210-286 29-102 (332)
5 2k3c_A TMIX peptide; membrane 39.9 0.49 1.7E-05 28.6 -5.0 26 193-218 6-31 (33)
6 2kv5_A FST, putative uncharact 30.1 46 0.0016 19.8 2.7 27 329-360 5-31 (33)
7 1zcd_A Na(+)/H(+) antiporter 1 21.1 58 0.002 31.0 3.2 22 231-252 63-84 (388)
8 3arc_L Photosystem II reaction 17.2 1.9E+02 0.0063 17.5 4.3 33 1-33 1-33 (37)
9 1b9u_A Protein (ATP synthase); 7.7 3.7E+02 0.013 15.3 4.1 21 150-170 12-32 (34)
10 2iub_A CORA, divalent cation t 7.2 2.8E+02 0.0096 25.6 3.3 33 222-254 300-335 (363)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.77 E-value=4e-19 Score=172.23 Aligned_cols=248 Identities=17% Similarity=0.068 Sum_probs=175.7
Q ss_pred CCchHHHHHHHHHHHhhcHHHHHHHHhhccccc-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHH
Q 017470 69 GAKLSEGVFVGSFLSMSSTAVVVKFLVEQNSNN-ALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGLLQGMVSMGKLLL 147 (371)
Q Consensus 69 G~~~~~al~lg~~ls~TS~~vv~~il~e~~~~~-~~~g~~~l~~avi~Di~~ii~l~i~~~~~~~~~~~~~~~~~~~~~~ 147 (371)
+.+..++..-..+...||.+..+.++.+.+... +..++.+++.+++||+.+++++++.. +++.+ +..+. .
T Consensus 116 ~~~~~~~~~gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfy---t~~~~---~~~l~---~ 186 (388)
T 1zcd_A 116 NYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFY---TNDLS---MASLG---V 186 (388)
T ss_dssp CCSSTTHHHHTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHS---CCCCC---HHHHH---H
T ss_pred hcCChhhhhhhHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHH---cCCcc---HHHHH---H
Confidence 444445566667778899999999999988654 44558899999999999999888762 22211 22111 1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccCc-----chhH
Q 017470 148 VLSIYLTVTSILSWSFVPRFLKLMIQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFMAGVMISTT-----DFAK 222 (371)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~l~~~~~~~~ia~~~g~s~~lgaf~aGl~~~~~-----~~~~ 222 (371)
. .+.++.. +..+|. ..++......+ .+...+.+++.|+|+.+|+|++|+++|.. +..+
T Consensus 187 ~-~~~~~~~---------~~l~r~-----~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~ 249 (388)
T 1zcd_A 187 A-AVAIAVL---------AVLNLC-----GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAK 249 (388)
T ss_dssp H-HHHHHHH---------HHHHHT-----TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHH
T ss_pred H-HHHHHHH---------HHHHHh-----cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHH
Confidence 1 1111111 111211 12222222222 22344566999999999999999999985 2457
Q ss_pred HHHHhhhcHH-HHHhHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHH
Q 017470 223 HTLDQVEPIR-NLFAALF-LSSIGMLIHVHFLWNH-VDILLASVILVIIVKTAVGTIVTKLF----------GYSMRTSF 289 (371)
Q Consensus 223 ~~~~~l~~i~-~~f~plF-F~~~G~~l~l~~l~~~-~~~~~~~~~~~~~~K~~~~~~~~~~~----------~~~~~~~~ 289 (371)
+++++++++. .++.|+| |+.+|.++|....... ........+..+++|+++++..++.. |.+++|..
T Consensus 250 ~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~ 329 (388)
T 1zcd_A 250 RLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIM 329 (388)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHH
Confidence 8899999987 5889999 9999999998432111 11122344445899999966666655 89999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhCCC--CchHHHHHHHHHHHHHHHHhHHHHhhhh
Q 017470 290 LVGVSLAQIGEFAFVLLSRASNLHL--VEGKMYLLLLGTTALSLVTTPLLFKLIP 342 (371)
Q Consensus 290 ~~g~~l~~~g~~~li~a~~a~~~g~--i~~~~~~~lv~~vils~l~~p~~~~~~~ 342 (371)
.+|..++.+++++++++++|++.+. ..++.+..++.++++|++++|++.|+..
T Consensus 330 ~vg~L~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 330 VVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp THHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHHHHhccchHHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998876 3566788888999999999999998764
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=93.94 E-value=1.1 Score=42.20 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=68.0
Q ss_pred HHHHHHHHHhccCc--chhHHHHHhhhcHHH--HHhHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017470 205 ELGSFMAGVMISTT--DFAKHTLDQVEPIRN--LFAALFLSSIGMLIHVHFLWNHVDILLASVILVIIVKTAVGTIVTKL 280 (371)
Q Consensus 205 ~lgaf~aGl~~~~~--~~~~~~~~~l~~i~~--~f~plFF~~~G~~l~l~~l~~~~~~~~~~~~~~~~~K~~~~~~~~~~ 280 (371)
++-.+++|..+++. +..++..+.+..+.. +...++ ..+.. +.+.+.+....+....++....-+..++..+|.
T Consensus 175 vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~-~~~~~--~~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~r~ 251 (332)
T 3zux_A 175 VLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIG-AVVGA--SKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKW 251 (332)
T ss_dssp THHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHH-HHHHH--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhH-HHHHh--hhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788887764 222333333333332 222222 22222 233333333223333333445667778888999
Q ss_pred hCCChHHHHHHHHHh-hhHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHhHHHHhhhh
Q 017470 281 FGYSMRTSFLVGVSL-AQIGEFAFVLLSRASNLHLVEGKMYLLLLGTTALSLVTTPLLFKLIP 342 (371)
Q Consensus 281 ~~~~~~~~~~~g~~l-~~~g~~~li~a~~a~~~g~i~~~~~~~lv~~vils~l~~p~~~~~~~ 342 (371)
.|.+.+|+..+++.. ++..+.++.++...+.. +++..-......+.-.+.+..+.+++.
T Consensus 252 ~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~~~la~~~~ 311 (332)
T 3zux_A 252 TGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISGSLLATYWA 311 (332)
T ss_dssp TTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888743 44456777776654421 222222223344444455666666553
No 3
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=90.65 E-value=0.035 Score=33.83 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHHhhcHHHHHHHHhhccc
Q 017470 71 KLSEGVFVGSFLSMSSTAVVVKFLVEQNS 99 (371)
Q Consensus 71 ~~~~al~lg~~ls~TS~~vv~~il~e~~~ 99 (371)
++..++++|+++|+|+|..+..++++.+.
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 45667899999999999999999999874
No 4
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=83.04 E-value=28 Score=32.37 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=42.6
Q ss_pred HHHHhccCcchhHHHHHhhhcHHHHHhHHHHHHhccccchhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChH
Q 017470 210 MAGVMISTTDFAKHTLDQVEPIRNLFAALFLSSIGMLIHVHFLWN---HVDILLASVILVIIVKTAVGTIVTKLFGYSMR 286 (371)
Q Consensus 210 ~aGl~~~~~~~~~~~~~~l~~i~~~f~plFF~~~G~~l~l~~l~~---~~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~ 286 (371)
+.|...|+... .+++.....+.+-+...|.+++.+++.. ++.......+.-++..++.++..++..+.+..
T Consensus 29 ~lg~~~P~~~~------~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~~ 102 (332)
T 3zux_A 29 AAAFFAPDTFK------WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAE 102 (332)
T ss_dssp HHHHHCGGGTG------GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHcchhhh------hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 55566665311 1334445666777888899998888764 23333333444566677777777777766543
No 5
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=39.90 E-value=0.49 Score=28.65 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=22.4
Q ss_pred HHHHHHHhCchHHHHHHHHHHhccCc
Q 017470 193 SAWCSDKLGLSLELGSFMAGVMISTT 218 (371)
Q Consensus 193 ~~~ia~~~g~s~~lgaf~aGl~~~~~ 218 (371)
.+..+|.+++|++++.+.+|+.+++.
T Consensus 6 ~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 6 AYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 45678999999999999999998863
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=30.14 E-value=46 Score=19.83 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=15.3
Q ss_pred HHHHHhHHHHhhhhhhhhhhhhhccCCCCCCC
Q 017470 329 LSLVTTPLLFKLIPNVMNLGILLHWFPSEGTP 360 (371)
Q Consensus 329 ls~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (371)
++.+++|++.-..- ....||..++.++
T Consensus 5 ~~~IIaPivVGvvl-----~L~d~WLn~r~~~ 31 (33)
T 2kv5_A 5 MSLVIAPIFVGLVL-----EMISRVLDEEDDS 31 (33)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHcccccc
Confidence 56667777665542 2345666655443
No 7
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=21.06 E-value=58 Score=31.04 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=19.0
Q ss_pred HHHHHhHHHHHHhccccchhhh
Q 017470 231 IRNLFAALFLSSIGMLIHVHFL 252 (371)
Q Consensus 231 i~~~f~plFF~~~G~~l~l~~l 252 (371)
++|-++.+||..+|+++|.+.+
T Consensus 63 indglm~lFff~vGLEik~e~l 84 (388)
T 1zcd_A 63 INDALMAVFFLLVGLEVKRELM 84 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhHHHHHHHHHHHhhHHHh
Confidence 4589999999999999987755
No 8
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=17.19 E-value=1.9e+02 Score=17.47 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=22.7
Q ss_pred CCCCCCCCchhhhcHHHHHHHHHHHHHHHHHHH
Q 017470 1 MSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGI 33 (371)
Q Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~lil~~a~~~~~ 33 (371)
|.+...+-||..--.++...+.++++.+.++.-
T Consensus 1 ~~~Npn~q~VELNRTSLy~GLLlifvlavlFss 33 (37)
T 3arc_L 1 MEPNPNRQPVELNRTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp CCCCTTCCCBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcceechhhHHHHHHHHHHHHHHhhh
Confidence 444455568877667788788888887776653
No 9
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=7.68 E-value=3.7e+02 Score=15.33 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 017470 150 SIYLTVTSILSWSFVPRFLKL 170 (371)
Q Consensus 150 ~~~~~~~~~~~~~~~~~l~~~ 170 (371)
+.|+++.+++.|++.|++.+.
T Consensus 12 i~Flil~~~l~kf~~~Pi~~~ 32 (34)
T 1b9u_A 12 IAFVLFVLFCMKYVWPPLMAA 32 (34)
T ss_dssp HHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666677776543
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=7.15 E-value=2.8e+02 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=16.9
Q ss_pred HHHHHhhhcHHHHHhHHHHH--Hhccccc-hhhhhH
Q 017470 222 KHTLDQVEPIRNLFAALFLS--SIGMLIH-VHFLWN 254 (371)
Q Consensus 222 ~~~~~~l~~i~~~f~plFF~--~~G~~l~-l~~l~~ 254 (371)
.+..+.+..+..+|.|.-|+ .-||+++ .+.+..
T Consensus 300 N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~~ 335 (363)
T 2iub_A 300 NEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELRW 335 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcccC
Confidence 45566666667789998888 5799986 555543
Done!