Query 017470
Match_columns 371
No_of_seqs 144 out of 1292
Neff 8.0
Searched_HMMs 13730
Date Mon Mar 25 14:57:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017470.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017470hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 20.7 1.1E+02 0.0079 20.1 7.6 15 189-203 52-66 (86)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 8.9 1.7E+02 0.012 16.1 4.3 29 5-33 5-33 (37)
3 d2yvxa3 f.57.1.1 (A:276-448) M 8.7 3.8E+02 0.028 20.1 7.0 80 35-115 6-88 (173)
4 d2iuba2 f.17.3.1 (A:286-349) M 8.5 1.6E+02 0.011 18.2 3.4 30 223-252 4-36 (64)
5 d1otsa_ f.20.1.1 (A:) Clc chlo 3.5 1.1E+03 0.079 19.7 13.4 15 332-346 414-430 (444)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 3.2 6.1E+02 0.045 16.3 4.0 19 313-331 8-26 (91)
7 d1cola_ f.1.1.1 (A:) Colicin A 3.1 8.4E+02 0.061 18.5 5.2 32 21-52 144-179 (197)
8 d2pila_ d.24.1.1 (A:) Pilin Gc 2.8 7.5E+02 0.054 16.3 4.5 23 321-343 8-30 (158)
9 d1u19a_ f.13.1.2 (A:) Rhodopsi 2.6 7.8E+02 0.057 18.9 4.9 34 315-348 283-316 (348)
10 d1e0ea_ a.4.10.1 (A:) N-termin 2.3 3.9E+02 0.029 15.4 1.7 14 33-46 21-34 (46)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=20.71 E-value=1.1e+02 Score=20.05 Aligned_cols=15 Identities=7% Similarity=0.164 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhCch
Q 017470 189 FCLLSAWCSDKLGLS 203 (371)
Q Consensus 189 ~~~~~~~ia~~~g~s 203 (371)
..++.....+.+|++
T Consensus 52 ~~i~~~~~L~~~Gi~ 66 (86)
T d2vv5a3 52 IAFTLIAALGRVGVQ 66 (86)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhCCC
Confidence 333444445677776
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.91 E-value=1.7e+02 Score=16.10 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=19.5
Q ss_pred CCCCchhhhcHHHHHHHHHHHHHHHHHHH
Q 017470 5 KSKYPVLQVDLRLISDLVVVIVSAAIGGI 33 (371)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~lil~~a~~~~~ 33 (371)
..+-|+..--.++...+.++++++.++.-
T Consensus 5 pn~q~veLNrtsLy~GlLlifvl~vLFss 33 (37)
T d2axtl1 5 PNRQPVELNRTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp SSCCCBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 34558866666777777777777766543
No 3
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=8.72 E-value=3.8e+02 Score=20.07 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=42.5
Q ss_pred HHHcCCchHHHHHHHHHHhCcCCccchhh-HHHHcCCchHHHHHHH--HHHHhhcHHHHHHHHhhcccccChhHHHHHHH
Q 017470 35 FSCLGQPVIVGYLLAGSIIGPGGLKFISE-LVQLCGAKLSEGVFVG--SFLSMSSTAVVVKFLVEQNSNNALHGQVTIGT 111 (371)
Q Consensus 35 ~~rl~~P~ivg~il~GiilGp~~l~~i~~-~~ellG~~~~~al~lg--~~ls~TS~~vv~~il~e~~~~~~~~g~~~l~~ 111 (371)
..|-|+|..+.-++.|++-+-. .+..++ +.+..-+.....++.| --.+.-|.++++|-+...+..+++..+....+
T Consensus 6 ~~k~RlpWL~i~l~~~~~~a~i-i~~Fe~~l~~~~~La~fiPli~~~gGN~G~Qs~ti~iR~La~g~i~~~~~~~~l~kE 84 (173)
T d2yvxa3 6 LWLARVRWLVILILTGMVTSSI-LQGFESVLEAVTALAFYVPVLLGTGGNTGNQSATLIIRALATRDLDLRDWRRVFLKE 84 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHTCTTTTTTTSCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcccccchhHHHHHHHH
Confidence 4566788887766666664421 111111 1111111111222222 23455666788888887777777888877655
Q ss_pred HHHH
Q 017470 112 LILQ 115 (371)
Q Consensus 112 avi~ 115 (371)
..+.
T Consensus 85 ~~vg 88 (173)
T d2yvxa3 85 MGVG 88 (173)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=8.51 E-value=1.6e+02 Score=18.16 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=15.8
Q ss_pred HHHHhhhcHHHHHhHHHHH--Hhccccc-hhhh
Q 017470 223 HTLDQVEPIRNLFAALFLS--SIGMLIH-VHFL 252 (371)
Q Consensus 223 ~~~~~l~~i~~~f~plFF~--~~G~~l~-l~~l 252 (371)
+..+.+.-+.-+|+|.=|+ ..||+++ .+..
T Consensus 4 ~~mk~lT~it~iflP~t~i~gifGMN~~~~P~~ 36 (64)
T d2iuba2 4 EVMKVLTIIATIFMPLTFIAGIYGMNFEYMPEL 36 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC
Confidence 4455566666799998888 6788875 4443
No 5
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=3.52 E-value=1.1e+03 Score=19.66 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=7.4
Q ss_pred HHhHHHHhhh--hhhhh
Q 017470 332 VTTPLLFKLI--PNVMN 346 (371)
Q Consensus 332 l~~p~~~~~~--~~~~~ 346 (371)
+++-.+.++. +++|+
T Consensus 414 ~~a~~v~~~~~~~siY~ 430 (444)
T d1otsa_ 414 LGATLLAQFTGGKPLYS 430 (444)
T ss_dssp HHHHHHHHTTTCCCHHH
T ss_pred HHHHHHHHHhCCCChHH
Confidence 3444445554 35676
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.19 E-value=6.1e+02 Score=16.33 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=10.3
Q ss_pred CCCchHHHHHHHHHHHHHH
Q 017470 313 HLVEGKMYLLLLGTTALSL 331 (371)
Q Consensus 313 g~i~~~~~~~lv~~vils~ 331 (371)
|-..++..+.......++.
T Consensus 8 gp~a~~i~~L~~~~~~i~~ 26 (91)
T d1fftb2 8 GQIGLEQRSLILTAFGLML 26 (91)
T ss_dssp SCCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4455666666555444443
No 7
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=3.13 E-value=8.4e+02 Score=18.52 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHH
Q 017470 21 LVVVIVSAAIGGIIFSCLGQPV----IVGYLLAGSI 52 (371)
Q Consensus 21 ~~lil~~a~~~~~l~~rl~~P~----ivg~il~Gii 52 (371)
...+.+.+..++.++--++.|. |+|++++|++
T Consensus 144 ~va~~~fs~~~~~~~~~~g~~~~~iGI~g~li~~~v 179 (197)
T d1cola_ 144 SVALGIFSATLGAYALSLGVPAIAVGIAGILLAAVV 179 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 3444556666777777888873 4566666665
No 8
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.77 E-value=7.5e+02 Score=16.34 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhh
Q 017470 321 LLLLGTTALSLVTTPLLFKLIPN 343 (371)
Q Consensus 321 ~~lv~~vils~l~~p~~~~~~~~ 343 (371)
.++....+++.+..|-..++.++
T Consensus 8 VViaIIgILaaia~P~~~~~~~~ 30 (158)
T d2pila_ 8 IVIAIVGILAAVALPAYQDYTAR 30 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666677777766644
No 9
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.61 E-value=7.8e+02 Score=18.90 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=21.4
Q ss_pred CchHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhh
Q 017470 315 VEGKMYLLLLGTTALSLVTTPLLFKLIPNVMNLG 348 (371)
Q Consensus 315 i~~~~~~~lv~~vils~l~~p~~~~~~~~~~~~~ 348 (371)
..+.......+...++..+-|++.-+..+.+|.+
T Consensus 283 ~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~ 316 (348)
T d1u19a_ 283 FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNC 316 (348)
T ss_dssp CCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3444444444455567778899988876666644
No 10
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=2.32 E-value=3.9e+02 Score=15.39 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=10.1
Q ss_pred HHHHHcCCchHHHH
Q 017470 33 IIFSCLGQPVIVGY 46 (371)
Q Consensus 33 ~l~~rl~~P~ivg~ 46 (371)
.+.+++++|..++-
T Consensus 21 ~L~~~F~lp~~vAr 34 (46)
T d1e0ea_ 21 ELSHKFGIPNLVAR 34 (46)
T ss_dssp HHHHHTCCCHHHHH
T ss_pred HHHHHcCCCHHHHH
Confidence 35567899988764
Done!