BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017471
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 317 bits (812), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 149/271 (54%), Positives = 196/271 (72%), Gaps = 1/271 (0%)
Query: 32 SATLVTADICIYTMLTVEDDEFWEGVLPVEFGELPALQDAVTVVGYPIGGDTISVTSGVV 91
+ LV C +L+VE ++FW+G P+ G LP LQD+VTVVGYP+GGDTISVT GVV
Sbjct: 112 AKVLVRGVDCDIALLSVESEDFWKGAEPLRLGHLPRLQDSVTVVGYPLGGDTISVTKGVV 171
Query: 92 SRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVI 151
SRIE+ SY HGS++LLG+QIDAAIN GNSGGPAFND+G+C+G+AFQ + E+ ENIGYVI
Sbjct: 172 SRIEVTSYAHGSSDLLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVI 231
Query: 152 PTPVIMHFIQDYEKNGAYTGFPLLGVEWQKMENPDLRVAMSMKADQKGVRIRRVDPTAPE 211
PT V+ HF+ DYE+NG YTG+P LGV QK+ENP LR + + ++ GV +RRV+PT+
Sbjct: 232 PTTVVSHFLTDYERNGKYTGYPCLGVLLQKLENPALRECLKVPTNE-GVLVRRVEPTSDA 290
Query: 212 SEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNF 271
S+VLK D+I+SFD + + +GTVPFR ERI F YL+SQK+ GD A + ++R +
Sbjct: 291 SKVLKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKV 350
Query: 272 NITLATHRRLIPSHNKGRPPSYYIIAGFVFS 302
+ L L+P H G PSY I+AG VF+
Sbjct: 351 QVVLRPRVHLVPYHIDGGQPSYIIVAGLVFT 381
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 104/228 (45%), Gaps = 26/228 (11%)
Query: 70 DAVTVVGYPIG----GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAF 125
D V +G P G G++ S T G+VS ++ E +Q DAAIN GNSGG
Sbjct: 152 DFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEGVENF-IQTDAAINPGNSGGALV 210
Query: 126 NDKGKCVGI--AFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGA-YTGFPLLGVEWQKM 182
N KG+ +GI A S +V IG+ IP ++ Q K G+ + G L+G+ Q +
Sbjct: 211 NAKGELIGINTAILSPYGGNV-GIGFAIPINMVKDVAQQIIKFGSIHRG--LMGIFVQHL 267
Query: 183 ENPDLRVAMSMKADQKGVRIRRVDPTAP-ESEVLKPSDIILSFDGIDIANDGTVPFRHGE 241
P+L AM D +G + +V+P +P E LK DII + I V
Sbjct: 268 -TPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQV------ 320
Query: 242 RIGFSYLVSQKYTGDSAAVKVLRDSKILNFNIT---LATHRRLIPSHN 286
+S G + + V RD+K L + + +H + + S+N
Sbjct: 321 ----KTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNN 364
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 104/228 (45%), Gaps = 26/228 (11%)
Query: 70 DAVTVVGYPIG----GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAF 125
D V +G P G G++ S T G+VS ++ E +Q DAAIN GN+GG
Sbjct: 152 DFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEGVENF-IQTDAAINPGNAGGALV 210
Query: 126 NDKGKCVGI--AFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGA-YTGFPLLGVEWQKM 182
N KG+ +GI A S +V IG+ IP ++ Q K G+ + G L+G+ Q +
Sbjct: 211 NAKGELIGINTAILSPYGGNV-GIGFAIPINMVKDVAQQIIKFGSIHRG--LMGIFVQHL 267
Query: 183 ENPDLRVAMSMKADQKGVRIRRVDPTAP-ESEVLKPSDIILSFDGIDIANDGTVPFRHGE 241
P+L AM D +G + +V+P +P E LK DII + I V
Sbjct: 268 -TPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQV------ 320
Query: 242 RIGFSYLVSQKYTGDSAAVKVLRDSKILNFNIT---LATHRRLIPSHN 286
+S G + + V RD+K L + + +H + + S+N
Sbjct: 321 ----KTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNN 364
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 104/229 (45%), Gaps = 28/229 (12%)
Query: 70 DAVTVVGYPIG----GDTISVTSGVVSRIEILSY-VHGSTELLGLQIDAAINSGNSGGPA 124
D V +G P G G++ S T G+VS ++ + G + Q DAAI GNSGG
Sbjct: 152 DFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEGVENFI--QTDAAIGGGNSGGAL 209
Query: 125 FNDKGKCVGI--AFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGA-YTGFPLLGVEWQK 181
N KG+ +GI A S +V IG+ IP ++ Q K G+ + G L+G+ Q
Sbjct: 210 VNAKGELIGINTAILSPYGGNV-GIGFAIPINMVKDVAQQIIKFGSIHRG--LMGIFVQH 266
Query: 182 MENPDLRVAMSMKADQKGVRIRRVDPTAP-ESEVLKPSDIILSFDGIDIANDGTVPFRHG 240
+ P+L AM D +G + +V+P +P E LK DII + I V
Sbjct: 267 L-TPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQV----- 320
Query: 241 ERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNIT---LATHRRLIPSHN 286
+S G + + V RD+K L + + +H + + S+N
Sbjct: 321 -----KTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNN 364
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 70 DAVTVVGYPIG----GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAF 125
D V +G P G G++ S T G+VS ++ E +Q DAAIN GNSGG
Sbjct: 152 DFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEGVENF-IQTDAAINPGNSGGALV 210
Query: 126 NDKGKCVGI--AFQSLKHEDVENIGYVIPTPVIMHFIQDYEKNGA-YTGFPLLGVEWQKM 182
N KG+ +GI A S +V IG+ IP ++ Q K G+ + G L+G+ Q +
Sbjct: 211 NAKGELIGINTAILSPYGGNV-GIGFAIPINMVKDVAQQIIKFGSIHRG--LMGIFVQHL 267
Query: 183 ENPDLRVAMSMKADQKGVRIRRVDPTAP-ESEVLKPSDIILSFDGIDI 229
P+L AM D +G + +V+P +P E LK DII + I
Sbjct: 268 -TPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKI 314
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDK 128
D +G P G G+T VTSG+VS + S ++ +Q DAAIN GNSGG N
Sbjct: 162 DYTVAIGNPFGLGET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNSGGALVNLN 218
Query: 129 GKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYTGFPL--LGVEWQKMENP 185
G+ +GI L + IG+ IP+ ++ + + G L +G E N
Sbjct: 219 GELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL----NS 274
Query: 186 DLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIG 244
+L AM + A Q+G + +V P + ++ +K D+I S +G I++
Sbjct: 275 ELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS------------- 320
Query: 245 FSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 275
F+ L +Q T G + +LRD K +N N+ L
Sbjct: 321 FAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDK 128
D +G P G G+T VTSG+VS + S ++ +Q DAAIN GNSGG N
Sbjct: 162 DYTVAIGNPFGLGET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNSGGALVNLN 218
Query: 129 GKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYTGFPL--LGVEWQKMENP 185
G+ +GI L + IG+ IP+ ++ + + G L +G E N
Sbjct: 219 GELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL----NS 274
Query: 186 DLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIG 244
+L AM + A Q+G + +V P + ++ +K D+I S +G I++
Sbjct: 275 ELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS------------- 320
Query: 245 FSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 275
F+ L +Q T G + +LRD K +N N+ L
Sbjct: 321 FAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDK 128
D +G P G G+T VTSG+VS + S ++ +Q DAAIN GN+GG N
Sbjct: 162 DYTVAIGNPFGLGET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNAGGALVNLN 218
Query: 129 GKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYTGFPL--LGVEWQKMENP 185
G+ +GI L + IG+ IP+ ++ + + G L +G E N
Sbjct: 219 GELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL----NS 274
Query: 186 DLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIG 244
+L AM + A Q+G + +V P + ++ +K D+I S +G I++
Sbjct: 275 ELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS------------- 320
Query: 245 FSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 275
F+ L +Q T G + +LRD K +N N+ L
Sbjct: 321 FAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDK 128
D +G P G G+T VTSG+VS + S ++ +Q DAAIN GN+GG N
Sbjct: 162 DYTVAIGNPFGLGET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNAGGALVNLN 218
Query: 129 GKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYT--GFPLLGVEWQKMENP 185
G+ +GI L + IG+ IP+ ++ + + G ++G E N
Sbjct: 219 GELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL----NS 274
Query: 186 DLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIG 244
+L AM + A Q+G + +V P + ++ +K D+I S +G I++
Sbjct: 275 ELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS------------- 320
Query: 245 FSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 275
F+ L +Q T G + +LRD K +N N+ L
Sbjct: 321 FAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDK 128
D +G P G G+T VTSG+VS + S ++ +Q DAAIN GN+GG N
Sbjct: 162 DYTVAIGNPFGLGET--VTSGIVSALG-RSGLNAENYENFIQTDAAINRGNAGGALVNLN 218
Query: 129 GKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYT--GFPLLGVEWQKMENP 185
G+ +GI L + IG+ IP+ ++ + + G ++G E N
Sbjct: 219 GELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTEL----NS 274
Query: 186 DLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIG 244
+L AM + A Q+G + +V P + ++ +K D+I S +G I++
Sbjct: 275 ELAKAMKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS------------- 320
Query: 245 FSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 275
F+ L +Q T G + +LRD K +N N+ L
Sbjct: 321 FAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDK 128
D +G P G G+T VTSG+VS + + E +Q DAAIN GNSGG N
Sbjct: 162 DYTVAIGNPFGLGET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNSGGALVNLN 218
Query: 129 GKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFI-QDYEKNGAYTGFPLLGVEWQKMENPD 186
G+ +GI L + IG+ IP+ + + Q E G LG+ ++ N +
Sbjct: 219 GELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG--ELGIXGTEL-NSE 275
Query: 187 LRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIGF 245
L A + A Q+G + +V P + ++ +K D+I S +G I++ F
Sbjct: 276 LAKAXKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS-------------F 321
Query: 246 SYLVSQKYT---GDSAAVKVLRDSKILNFNITL 275
+ L +Q T G + +LRD K +N N+ L
Sbjct: 322 AALRAQVGTXPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 94/219 (42%), Gaps = 34/219 (15%)
Query: 72 VTVVGYPIGGDTISVTSGVVS--RIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKG 129
V +G P G D ++T+GV+S R EI S G +Q DAAIN GNSGGP + G
Sbjct: 131 VFAIGNPFGLDH-TLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGPLLDSSG 189
Query: 130 KCVGIAFQSLKHEDVEN-IGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKMENPDLR 188
+GI + +G+ IP + + + G T P+LG+++ PD
Sbjct: 190 TLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVT-RPILGIKFA----PDQS 244
Query: 189 VAMSMKADQKGVRIRRVDPTAPESEV------------LKPSDIILSFDGIDIANDGTVP 236
V + GV + P+ P + L DII S +G ++N G+
Sbjct: 245 VE---QLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSN-GSDL 300
Query: 237 FRHGERIGFSYLVSQKYTGDSAAVKVLRDSKILNFNITL 275
+R ++ Q GD V+VLR ++TL
Sbjct: 301 YR---------ILDQCKVGDEVTVEVLRGDHKEKISVTL 330
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDK 128
D +G P G G+T VTSG+VS + + E +Q DAAIN GN+GG N
Sbjct: 162 DYTVAIGNPFGLGET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNAGGALVNLN 218
Query: 129 GKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFI-QDYEKNGAYTGFPLLGVEWQKMENPD 186
G+ +GI L + IG+ IP+ + + Q E G LG+ ++ N +
Sbjct: 219 GELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG--ELGIXGTEL-NSE 275
Query: 187 LRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIGF 245
L A + A Q+G + +V P + ++ +K D+I S +G I++ F
Sbjct: 276 LAKAXKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS-------------F 321
Query: 246 SYLVSQKYT---GDSAAVKVLRDSKILNFNITL 275
+ L +Q T G + +LRD K +N N+ L
Sbjct: 322 AALRAQVGTXPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDK 128
D +G P G G+T VTSG+VS + + E +Q DAAIN GN+GG N
Sbjct: 162 DYTVAIGNPFGLGET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNAGGALVNLN 218
Query: 129 GKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFI-QDYEKNGAYTGFPLLGVEWQKMENPD 186
G+ +GI L + IG+ IP+ + + Q E G LG+ ++ N +
Sbjct: 219 GELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG--ELGIXGTEL-NSE 275
Query: 187 LRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGERIGF 245
L A + A Q+G + +V P + ++ +K D+I S +G I++ F
Sbjct: 276 LAKAXKVDA-QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISS-------------F 321
Query: 246 SYLVSQKYT---GDSAAVKVLRDSKILNFNITL 275
+ L +Q T G + +LRD K +N N+ L
Sbjct: 322 AALRAQVGTXPVGSKLTLGLLRDGKQVNVNLEL 354
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 60 VEFGELPALQ--DAVTVVGYPIGGDTISVTSGVVSRIEI-LSYVHGSTELLGL-QIDAAI 115
+EFG+ ++ + +G P+G +VT GVVS + GS +GL Q DAAI
Sbjct: 120 LEFGDSDKVKIGEWAIAIGNPLGFQH-TVTVGVVSATNRRIPKPDGSGYYVGLIQTDAAI 178
Query: 116 NSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFI 160
N GNSGGP N G+ +GI + ++ N+G+ IP + F+
Sbjct: 179 NPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKKFL 223
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 42/234 (17%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 100 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 156
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQDYEKNGA 168
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 157 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRG 216
Query: 169 YTGFPLLGVEWQKMENPDLRVAMSMKADQ-KGVRIRRVDPTAPESEV-LKPSDIILSFDG 226
Y G G E + A DQ +G+ + V P P + ++ +D+I+S D
Sbjct: 217 YIGIG--GREIAPLH------AQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVD- 267
Query: 227 IDIANDGTVPFRHGERIGFSYL-----VSQKYTGDSAAVKVLRDSKILNFNITL 275
+ S L V++ G V V+RD K L +T+
Sbjct: 268 --------------NKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTI 307
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 95/234 (40%), Gaps = 42/234 (17%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 105 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 161
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQDYEKNGA 168
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 162 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRG 221
Query: 169 YTGFPLLGVEWQKMENPDLRVAMSMKADQ-KGVRIRRVDPTAPESEV-LKPSDIILSFDG 226
Y G G E + A DQ +G+ + V P P + ++ +D+I+S D
Sbjct: 222 YIGIG--GREIAPLH------AQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVD- 272
Query: 227 IDIANDGTVPFRHGERIGFSYL-----VSQKYTGDSAAVKVLRDSKILNFNITL 275
+ S L V++ G V V+RD K L +T+
Sbjct: 273 --------------NKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTI 312
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 96/237 (40%), Gaps = 42/237 (17%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 126 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 182
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQDYEKNGA 168
GN GG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 183 PGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRG 242
Query: 169 YTGFPLLGVEWQKMENPDLRVAMSMKADQ-KGVRIRRVDPTAPESEV-LKPSDIILSFDG 226
Y G + G E + A DQ +G+ + V P P + ++ +D+I+S D
Sbjct: 243 YIG--IGGREIAPLH------AQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVD- 293
Query: 227 IDIANDGTVPFRHGERIGFSYL-----VSQKYTGDSAAVKVLRDSKILNFNITLATH 278
+ S L V++ G V V+RD K L +T+ +
Sbjct: 294 --------------NKPAISALETMAQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEY 336
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 100 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 156
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQDYEKNGA 168
GNSGG N G+ GI S E E IG+ IP T + I+D
Sbjct: 157 HGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGRVIRG 216
Query: 169 YTGFPLLGVEWQKMENPDLRVAMSMKADQ-KGVRIRRVDPTAPESEV-LKPSDIILSFD 225
Y G + G E + A DQ +G+ + V P P + ++ +D+I+S D
Sbjct: 217 YIG--IGGREIAPLH------AQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVD 267
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 53 FWEGVLPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQID 112
F + V +F + ++D ++V+GYP G T + ++++ G+ ++ D
Sbjct: 94 FNKNVSYTKFADGAKVKDRISVIGYPKGAQT---KYKMFESTGTINHISGTF----MEFD 146
Query: 113 AAINSGNSGGPAFNDKGKCVGIAFQ-SLKHEDVENIGYVIPTPVIMHFIQD 162
A GNSG P N K + +GI + S K E +N G V TP + FIQ+
Sbjct: 147 AYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFG-VYFTPQLKEFIQN 196
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 93/218 (42%), Gaps = 33/218 (15%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGL----QIDAAINSGNSGGPA 124
D VG P G G T TSG+VS + L GL Q DA+IN GNSGG
Sbjct: 139 DFAVAVGNPFGLGQT--ATSGIVSALG-----RSGLNLEGLENFIQTDASINRGNSGGAL 191
Query: 125 FNDKGKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKME 183
N G+ +GI L IG+ IP+ + Q G LLG++ +M
Sbjct: 192 LNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIK-RGLLGIKGTEM- 249
Query: 184 NPDLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGER 242
+ D+ A ++ Q+G + V P + ++ +K DII S +G P
Sbjct: 250 SADIAKAFNLDV-QRGAFVSEVLPGSGSAKAGVKAGDIITSLNG--------KPLNS--- 297
Query: 243 IGFSYLVSQKYT---GDSAAVKVLRDSKILNFNITLAT 277
F+ L S+ T G + +LR+ K L +TL T
Sbjct: 298 --FAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT 333
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 85 SVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE 142
++TSG+VS + + G T + +Q DAAI+ GN+GGP N G+ +G+ +
Sbjct: 136 TITSGIVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKV--- 192
Query: 143 DVENIGYVIPTPVIMHFIQDYEKNGAYTGFP-----LLGVEWQKMENPDLRVAMSMKAD- 196
I + IP+ + F+ EK + +G +GV + +P + + ++
Sbjct: 193 -TAGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLTL-SPSILAELQLREPS 250
Query: 197 ----QKGVRIRRVDPTAPESEV-LKPSDIILSF 224
Q GV I +V +P L+P D+IL+
Sbjct: 251 FPDVQHGVLIHKVILGSPAHRAGLRPGDVILAI 283
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 85 SVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE 142
+VT+G+VS + G ++++ +Q DA IN GNSGGP N G+ +GI +LK
Sbjct: 135 TVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGI--NTLKV- 191
Query: 143 DVENIGYVIPTPVIMHFIQDYE----KNGAYTGFPLLGVEWQKMENPDLRVAMSMKAD-- 196
I + IP+ I F+ + K A T +G+ + + + D
Sbjct: 192 -TAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFP 250
Query: 197 --QKGVRIRRVDPTAP-ESEVLKPSDIILSFDGIDI--AND 232
G I V P P E+ LK +D+I+S +G + AND
Sbjct: 251 DVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAND 291
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 126 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGAIGLNPTGRQNF-LQTDASIN 182
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 183 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 92/216 (42%), Gaps = 33/216 (15%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGL----QIDAAINSGNSGGPA 124
D VG P G G T TSG+VS + L GL Q DA+IN GN+GG
Sbjct: 139 DFAVAVGNPFGLGQT--ATSGIVS-----ALGRSGLNLEGLENFIQTDASINRGNAGGAL 191
Query: 125 FNDKGKCVGIAFQSLKHEDVE-NIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKME 183
N G+ +GI L IG+ IP+ + Q G LLG++ +M
Sbjct: 192 LNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIK-RGLLGIKGTEM- 249
Query: 184 NPDLRVAMSMKADQKGVRIRRVDPTAPESEV-LKPSDIILSFDGIDIANDGTVPFRHGER 242
+ D+ A ++ Q+G + V P + ++ +K DII S +G P
Sbjct: 250 SADIAKAFNLDV-QRGAFVSEVLPGSGSAKAGVKAGDIITSLNG--------KPLNS--- 297
Query: 243 IGFSYLVSQKYT---GDSAAVKVLRDSKILNFNITL 275
F+ L S+ T G + +LR+ K L +TL
Sbjct: 298 --FAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTL 331
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 128 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGAIGLNPTGRQNF-LQTDASIN 184
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 185 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 126 IPINARRVPHIGDVVLAIGNPANLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 182
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 183 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 85 SVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE 142
+VT+G+VS + G ++++ +Q DA IN GN+GGP N G+ +GI +LK
Sbjct: 135 TVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGI--NTLKV- 191
Query: 143 DVENIGYVIPTPVIMHFIQDYE----KNGAYTGFPLLGVEWQKMENPDLRVAMSMKAD-- 196
I + IP+ I F+ + K A T +G+ + + + D
Sbjct: 192 -TAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFP 250
Query: 197 --QKGVRIRRVDPTAP-ESEVLKPSDIILSFDGIDI--AND 232
G I V P P E+ LK +D+I+S +G + AND
Sbjct: 251 DVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAND 291
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 126 IPINARRVPHIGDVVLAIGNPANLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 182
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 183 PGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 116 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 172
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 173 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 226
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 126 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 182
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 183 PGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 128 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 184
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 185 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 100 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 156
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 157 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 210
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 53 FWEGVLPVEFGELPALQDAVTVVGYPIGGDTISV---TSGVVSRIE--ILSYVHGSTELL 107
F E V F + + D + V+GYP+ ++G + RI+ IL++
Sbjct: 98 FNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIKDNILNF-------- 149
Query: 108 GLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVIPTPVIMHFIQDY 163
DA I GNSG P N + +G+ + + E G V TP I FIQ +
Sbjct: 150 ----DAYIEPGNSGSPVLNSNNEVIGVVYGGIGKIGSEYNGAVYFTPQIKDFIQKH 201
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 58 LPVEFGELPALQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINS 117
+P+ +P + D V +G P + +T G++S + + LQ DA+IN
Sbjct: 126 IPINARRVPHIGDVVLAIGNPYNLGQV-ITQGIISATGRIGLNPTGRQNF-LQTDASINP 183
Query: 118 GNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 184 GNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 128 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 184
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP 152
GNSGG N G+ GI S E E IG+ IP
Sbjct: 185 HGNSGGALVNSLGELXGINTLSFDKSNDGETPEGIGFAIP 224
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 126 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 182
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GN GG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 183 HGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + LQ DA+IN
Sbjct: 128 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LQTDASIN 184
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GN GG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 185 HGNXGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + L DA+IN
Sbjct: 126 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LATDASIN 182
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 183 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 236
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
Query: 58 LPVEFGELPALQDAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAIN 116
+P+ +P + D V +G P G TI T G++S + + L DA+IN
Sbjct: 128 IPINARRVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNF-LATDASIN 184
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKH----EDVENIGYVIP----TPVIMHFIQD 162
GNSGG N G+ +GI S E E IG+ IP T ++ I+D
Sbjct: 185 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRD 238
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 37 TADICIYTMLTVEDDEFWEGVLPVEFGELPALQ--DAVTVVGYPIGGDTISVTSGVVSRI 94
T+DI + + + G+ P+ G L+ V +G P+G + +VT+G+VS +
Sbjct: 86 TSDIAVVRV------QGVSGLTPISLGSSSDLRVGQPVLAIGSPLGLEG-TVTTGIVSAL 138
Query: 95 EILSYVHG-----STELLGLQIDAAINSGNSGGPAFNDKGKCVGI--AFQSLKHEDVE-- 145
G +T L +Q DAAIN GNSGG N + VG+ A +L + +
Sbjct: 139 NRPVSTTGEAGNQNTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQ 198
Query: 146 ----NIGYVIP 152
+G+ IP
Sbjct: 199 SGSIGLGFAIP 209
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 53 FWEGVLPVEFGELPALQDAVTVVGYPIGGDTISV---TSGVVSRIEILSYVHGSTELLGL 109
F + V P ++ + + V+GYP V ++G V +E S V+
Sbjct: 97 FNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVEGSSIVY-------- 148
Query: 110 QIDAAINSGNSGGPAFNDKGKCVGIAFQS-LKHEDVENIGYVIPTPVIMHFIQD 162
A SGNSG P N + VGI F S +K++D N V TP I FI +
Sbjct: 149 --SAHTESGNSGSPVLNSNNELVGIHFASDVKNDDNRNAYGVYFTPEIKKFIAE 200
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 144 VENIGYVIPTPVIMHFIQDYEKNGAYTGFPLLGVEWQKMEN---PDLRVAMSMKADQKGV 200
+E +G+ IP ++ I+ EKNG T P LG++ + N D+R GV
Sbjct: 1 MEGLGFAIPANDAINIIEQLEKNGKVT-RPALGIQMVNLSNVSTSDIRRLNIPSNVTSGV 59
Query: 201 RIRRVDPTAPESEVLKPSDIILSFDGIDIA 230
+R V P + L+ D+I D +IA
Sbjct: 60 IVRSVQSNMPANGHLEKYDVITKVDDKEIA 89
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 85 SVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE 142
+VT+G+VS + G ++++ +Q DA IN GNSGGP N G+ +GI +LK
Sbjct: 135 TVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGI--NTLKV- 191
Query: 143 DVENIGYVIPTPVIMHFIQD 162
I + IP+ I F+ +
Sbjct: 192 -TAGISFAIPSDKIKKFLTE 210
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 85 SVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE 142
+VT+G+VS + G ++++ +Q DA IN GNSGGP N G+ +GI +LK
Sbjct: 152 TVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGI--NTLKV- 208
Query: 143 DVENIGYVIPTPVIMHFIQD 162
I + IP+ I F+ +
Sbjct: 209 -TAGISFAIPSDKIKKFLTE 227
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 85 SVTSGVVSRIEILSYVHG--STELLGLQIDAAINSGNSGGPAFNDKGKCVGIAFQSLKHE 142
+VT+G+VS + G ++++ +Q DA IN GN+GGP N G+ +GI +LK
Sbjct: 152 TVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGI--NTLKV- 208
Query: 143 DVENIGYVIPTPVIMHFIQD 162
I + IP+ I F+ +
Sbjct: 209 -TAGISFAIPSDKIKKFLTE 227
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 70 DAVTVVGYPIG-GDTISVTSGVVSRIEILSYVHGSTELLGL----QIDAAINSGNSGGPA 124
D VG P G G T TSG+VS + L GL Q DA+IN GNSGG
Sbjct: 139 DFAVAVGNPFGLGQT--ATSGIVSALG-----RSGLNLEGLENFIQTDASINRGNSGGAL 191
Query: 125 FNDKGKCVGIAFQSLKHEDVE-NIGYVIPT 153
N G+ +GI L IG+ IP+
Sbjct: 192 LNLNGELIGINTAILAPGGGSVGIGFAIPS 221
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease From
Staphylococcus Aureus
Length = 268
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 72 VTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKC 131
+TV GYP GD V + S+ +I +Y+ G +Q D + GNSG P FN+K +
Sbjct: 129 ITVTGYP--GDK-PVATMWESKGKI-TYLKGEA----MQYDLSTTGGNSGSPVFNEKNEV 180
Query: 132 VGIAFQSLKHE 142
+GI + + +E
Sbjct: 181 IGIHWGGVPNE 191
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 72 VTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGKC 131
+TV GYP GD V + S+ +I +Y+ G +Q D + GNSG P FN+K +
Sbjct: 129 ITVTGYP--GDK-PVATMWESKGKI-TYLKGEA----MQYDLSTTGGNSGSPVFNEKNEV 180
Query: 132 VGIAFQSLKHE 142
+GI + + +E
Sbjct: 181 IGIHWGGVPNE 191
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 193 MKADQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERI 243
+ D G+ + RV P P S++L+P D I+ +G N HG+ +
Sbjct: 19 FRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN-----IEHGQAV 64
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 193 MKADQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERI 243
+ D G+ + RV P P S++L+P D I+ +G N HG+ +
Sbjct: 20 FRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN-----IEHGQAV 65
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 194 KADQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGF 245
+ D G+ + RV P P S++L+P D I+ +G N HG+ +
Sbjct: 39 RPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN-----IEHGQAVSL 85
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 193 MKADQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERI 243
+ D G+ + RV P P S++L+P D I+ +G N HG+ +
Sbjct: 30 FRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFIN-----IEHGQAV 75
>pdb|2KL1|A Chain A, Solution Structure Of Gtr34c From Geobacillus
Thermodenitrificans. Northeast Structural Genomics
Consortium Target Gtr34c
Length = 94
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 196 DQKGVRIRRVDPTAPESEVLKPSDIILSFDGIDIANDGTVPFRHGERIGFSYLVSQKYTG 255
+ KGV + V P P + L+ D I + DG P E+I SY V +K G
Sbjct: 3 EAKGVYVMSVLPNMPAAGRLEAGDRIAAIDG--------QPINTSEQI-VSY-VREKQAG 52
Query: 256 DSAAVKVLRDSK 267
D V +RD K
Sbjct: 53 DRVRVTFIRDRK 64
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 62 FGELPALQDA-VTVVGYPIGGDTISVTSGVVSRIEILSY-VHGSTELLG---LQIDAAIN 116
F PA A V V+GYP GG+ + + + I + ++G E + I A +
Sbjct: 120 FAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRADVE 179
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVI 151
G+SGGP + G+ +G+ F + +D E G+V+
Sbjct: 180 QGDSGGPLIDLNGQVLGVVFGA-AIDDAET-GFVL 212
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 10/57 (17%)
Query: 126 NDKGKCV-GIAFQSLKHEDVENIGYVIPT---PVIMHFIQDYEKNGAYTGFPLLGVE 178
++KG G+ F++ E +G V+P P I I++ KNG G+PL+G++
Sbjct: 531 DEKGNITEGLVFEN------EVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLK 581
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 62 FGELPALQDA-VTVVGYPIGGDTISVTSGVVSRIEILSY-VHGSTELLG---LQIDAAIN 116
F PA A V V+GYP GG+ + + + I + ++G E + I A +
Sbjct: 102 FAAEPAKTGADVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDVYTIRADVE 161
Query: 117 SGNSGGPAFNDKGKCVGIAFQSLKHEDVENIGYVI 151
G+SGGP + G+ +G+ F + +D E G+V+
Sbjct: 162 QGDSGGPLIDLNGQVLGVVFGA-AIDDAET-GFVL 194
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 57 VLPVEFGELPALQDA--VTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAA 114
+ P + G L+D + ++GYP V S IE+ +T GL+
Sbjct: 139 ISPAKIGTSNDLKDGDKLELIGYPF---DHKVNQMHRSEIEL------TTLSRGLRYYGF 189
Query: 115 INSGNSGGPAFNDKGKCVGIAFQSLKHEDVEN 146
GNSG FN G+ VGI + H D E+
Sbjct: 190 TVPGNSGSGIFNSNGELVGIHSSKVSHLDREH 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,378,058
Number of Sequences: 62578
Number of extensions: 446146
Number of successful extensions: 1074
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 61
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)