BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017472
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OM7|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
Length = 456
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 141 SEASLGLFMDMLAGEKSI-----ARRVFGQSKRFQPNKPSTKAQAAVALTSGRMAK 191
++ S+ LF AG+KSI A RVF S +F PN P K Q SG + K
Sbjct: 98 NDTSVYLFYKK-AGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTK 152
>pdb|3OM5|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
Length = 456
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 141 SEASLGLFMDMLAGEKSI-----ARRVFGQSKRFQPNKPSTKAQAAVALTSGRMAK 191
++ S+ LF AG+KSI A RVF S +F PN P K Q SG + K
Sbjct: 98 NDTSVYLFYKK-AGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTK 152
>pdb|3OM6|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
Length = 456
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 141 SEASLGLFMDMLAGEKSI-----ARRVFGQSKRFQPNKPSTKAQAAVALTSGRMAK 191
++ S+ LF AG+KSI A RVF S +F PN P K Q SG + K
Sbjct: 98 NDTSVYLFYKK-AGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTK 152
>pdb|3OM4|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
Length = 456
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 141 SEASLGLFMDMLAGEKSI-----ARRVFGQSKRFQPNKPSTKAQAAVALTSGRMAK 191
++ S+ LF AG+KSI A RVF S +F PN P K Q SG + K
Sbjct: 98 NDTSVYLFYKK-AGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTK 152
>pdb|3OM2|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
D257a
Length = 456
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 141 SEASLGLFMDMLAGEKSI-----ARRVFGQSKRFQPNKPSTKAQAAVALTSGRMAK 191
++ S+ LF AG+KSI A RVF S +F PN P K Q SG + K
Sbjct: 98 NDTSVYLFYKK-AGDKSIDSWKNAGRVFKDSDKFVPNDPHLKNQTQEWSGSGTLTK 152
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 1472
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 266 EDLKEKAAMDCQRQL--LLNLKDEVDEMSGRL---ESERATYVAEKCTLQDTLSDLQTKL 320
+ L+E+ M + +L L N+ DE DE RL ES T AE ++D + D ++
Sbjct: 512 DSLRERRVMSLKTRLGNLGNILDE-DETQTRLLQLESPVLT-TAEFRAMRDYMGDTAAEI 569
Query: 321 EGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEE 360
+ EA ++ALR +R ED R + +E
Sbjct: 570 DATFPVDGGPEALRDALRRIRQETEDAVRGGATHVILTDE 609
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 266 EDLKEKAAMDCQRQL--LLNLKDEVDEMSGRL---ESERATYVAEKCTLQDTLSDLQTKL 320
+ L+E+ M + +L L N+ DE DE RL ES T AE ++D + D ++
Sbjct: 512 DSLRERRVMSLKTRLGNLGNILDE-DETQTRLLQLESPVLT-TAEFRAMRDYMGDTAAEI 569
Query: 321 EGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEE 360
+ EA ++ALR +R ED R + +E
Sbjct: 570 DATFPVDGGPEALRDALRRIRQETEDAVRGGATHVILTDE 609
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein
Length = 1069
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 189 MAKAISNELSRLEAERSSRQAEMAEIRSQLFDSGDI---QRWWDKKFSEERARGFEVEKL 245
+AK I+ L L+++ + A +++ + G I QRW D ++R G +
Sbjct: 465 LAKQIATSLQNLQSKTNRAVANTRPVKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRG 524
Query: 246 YIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAE 305
+A L V Y +DL K C R L + G ES +A +A
Sbjct: 525 LVAEGRRLAN---VMMGPYRQDLLAK----CDRVDQLAAQLADLAARGEGESPQARAIAA 577
Query: 306 KCTLQDTLSDLQTKLE 321
+ LQD+L DL+ +++
Sbjct: 578 Q--LQDSLKDLKARMQ 591
>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
H2a.Z-H2b
Length = 192
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 219 FDSGDIQRWWDKKFSEERARGFEVEKLYIAARCD-LEEELIVQEKNYAEDLKEKAAMDCQ 277
F G I+R+ K+ + R R +Y+ A + L E++ N A+DLK K
Sbjct: 106 FPVGRIKRYL-KRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRH 164
Query: 278 RQLLLNLKDEVDEM 291
QL + DE+D +
Sbjct: 165 LQLAIRGDDELDSL 178
>pdb|2CC1|A Chain A, Crystal Structure Of The Class A Beta-Lactamase From
Mycobacterium Fortuitum
Length = 262
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 154 GEKSIARRVFGQSKRFQPNKPSTKAQAAVALTSGRMAKA 192
GE S+ RVF + PN P T+A+A +T + +A
Sbjct: 60 GEISLDNRVFVDADALVPNSPVTEARAGAEMTLAELCQA 98
>pdb|1TR2|A Chain A, Crystal Structure Of Human Full-Length Vinculin (Residues
1- 1066)
pdb|1TR2|B Chain B, Crystal Structure Of Human Full-Length Vinculin (Residues
1- 1066)
Length = 1066
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 56/138 (40%), Gaps = 16/138 (11%)
Query: 189 MAKAISNELSRLEAERSSRQAEMAEIRSQLFDSGDI---QRWWDKKFSEERARGFEVEKL 245
+AK ++ L L+ + + A ++ + G I QRW D ++R G +
Sbjct: 462 LAKQVATALQNLQTKTNRAVANSRPAKAAVHLEGKIEQAQRWIDNPTVDDRGVGQAAIRG 521
Query: 246 YIAARCDLEEELIVQEKNYAEDLKEKAAMDCQR--QLLLNLKDEVDEMSGRLESERATYV 303
+A L V Y +DL K C R QL L D ++ R E E
Sbjct: 522 LVAEGHRLAN---VXXGPYRQDLLAK----CDRVDQLTAQLAD----LAARGEGESPQAR 570
Query: 304 AEKCTLQDTLSDLQTKLE 321
A LQD+L DL+ + +
Sbjct: 571 ALASQLQDSLKDLKARXQ 588
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,994,124
Number of Sequences: 62578
Number of extensions: 385698
Number of successful extensions: 1147
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1132
Number of HSP's gapped (non-prelim): 42
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)