BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017472
         (371 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5QYA9|ISPG_IDILO 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Idiomarina
           loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
           GN=ispG PE=3 SV=1
          Length = 372

 Score = 33.9 bits (76), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 26  INSLLERNPKLRIVPCKSLSGTVVAAFNDVDVEDPDIESIQALAEAGVI------PSQLL 79
           + SL  R   +  + C S S       N V+  +  +E I    +  +I      P + L
Sbjct: 255 LKSLRIRARGINFIACPSCSRQEFDVINTVNALEERLEDITIPMDVSIIGCVVNGPGEAL 314

Query: 80  GKHYGSDGSKGQGGIYFFPERFISRYDLINWKAQVDYEVKPDIVEQISRTKMSYMDVREI 139
             H G  G+K + G+Y    R   R D  N   +++ +++    EQ+   + + +DV+EI
Sbjct: 315 VSHVGLAGAKNKSGLYIGGARQKLRLDNQNLVDELEAQIR----EQVKFIEANKIDVKEI 370

Query: 140 NS 141
           N 
Sbjct: 371 NG 372


>sp|A1WWU7|SYS_HALHL Serine--tRNA ligase OS=Halorhodospira halophila (strain DSM 244 /
           SL1) GN=serS PE=3 SV=1
          Length = 425

 Score = 32.7 bits (73), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 8/110 (7%)

Query: 238 RGFEVE----KLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSG 293
           RGFE +    +   A R DL++E    +    E  KE  A   + + +  LK EV  ++ 
Sbjct: 21  RGFEFDAAGYRALDARRRDLQQETQTLQNQRNERSKEIGAAKKRGEDIEPLKAEVGRIAE 80

Query: 294 RLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSW 343
           RL SE  T + E   +Q+ L +L   L  LLD +     ++E  R+LR W
Sbjct: 81  RL-SEAETALNE---VQEQLDELHLGLPNLLDEQVPDGQDEEDNRVLRQW 126


>sp|B2RX88|CSPP1_MOUSE Centrosome and spindle pole associated protein 1 OS=Mus musculus
           GN=Cspp1 PE=1 SV=2
          Length = 1205

 Score = 32.3 bits (72), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 12/84 (14%)

Query: 283 NLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLL---------DTKSRSEAE 333
           NL+D  ++ SG L+++ + + A   T  + LS+LQ K + L          + + R EAE
Sbjct: 679 NLEDSANKNSGPLQTQSSPF-ARGNTFGEPLSELQIKQQELYKNFLRFQIEEKRQREEAE 737

Query: 334 KEALRILRSWVEDEARKSQARAKV 357
           +E LR+  +  ++E R ++ RA++
Sbjct: 738 REKLRV--AEEKEEKRLAEQRARI 759


>sp|Q8VDD5|MYH9_MOUSE Myosin-9 OS=Mus musculus GN=Myh9 PE=1 SV=4
          Length = 1960

 Score = 31.6 bits (70), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 9/79 (11%)

Query: 284  LKDEVDEMSGRLESERATYV---AEKCTLQDTLSDLQTKLEGLLDTKS-----RSEAEKE 335
            L+ ++ E+   LESERA+      +K  L + L  L+T+LE  LD+ +     RS+ E+E
Sbjct: 1109 LETQISELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQE 1168

Query: 336  ALRILRSWVEDEARKSQAR 354
             + IL+  +EDEA+  +A+
Sbjct: 1169 -VSILKKTLEDEAKTHEAQ 1186


>sp|Q258K2|MYH9_CANFA Myosin-9 OS=Canis familiaris GN=MYH9 PE=2 SV=1
          Length = 1960

 Score = 31.6 bits (70), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 9/79 (11%)

Query: 284  LKDEVDEMSGRLESERATYV---AEKCTLQDTLSDLQTKLEGLLDTKS-----RSEAEKE 335
            L+ ++ E+   LESERA+      +K  L + L  L+T+LE  LD+ +     RS+ E+E
Sbjct: 1109 LESQISELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQE 1168

Query: 336  ALRILRSWVEDEARKSQAR 354
             + IL+  +E+EAR  +A+
Sbjct: 1169 -VNILKKTLEEEARTHEAQ 1186


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.130    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,537,284
Number of Sequences: 539616
Number of extensions: 5104824
Number of successful extensions: 22103
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 534
Number of HSP's that attempted gapping in prelim test: 21272
Number of HSP's gapped (non-prelim): 1278
length of query: 371
length of database: 191,569,459
effective HSP length: 119
effective length of query: 252
effective length of database: 127,355,155
effective search space: 32093499060
effective search space used: 32093499060
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)