Query 017472
Match_columns 371
No_of_seqs 159 out of 346
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 08:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00395 SLH: S-layer homology 99.2 8.8E-12 1.9E-16 89.1 4.2 44 51-108 1-45 (45)
2 PF00395 SLH: S-layer homology 98.4 2.3E-07 5.1E-12 66.2 2.7 43 132-181 1-45 (45)
3 PF08317 Spc7: Spc7 kinetochor 94.3 1.9 4E-05 43.1 15.5 166 168-362 123-292 (325)
4 smart00787 Spc7 Spc7 kinetocho 91.8 6.6 0.00014 39.4 15.0 167 168-362 118-287 (312)
5 PF09726 Macoilin: Transmembra 90.5 23 0.0005 39.5 18.8 138 192-330 422-575 (697)
6 PRK00106 hypothetical protein; 89.8 33 0.00071 37.2 19.7 53 273-325 112-164 (535)
7 KOG1029 Endocytic adaptor prot 86.2 17 0.00038 41.0 14.1 86 232-324 363-457 (1118)
8 PRK00106 hypothetical protein; 86.0 52 0.0011 35.6 17.6 29 269-297 122-150 (535)
9 TIGR01069 mutS2 MutS2 family p 85.1 7.2 0.00016 43.7 11.0 64 244-307 497-560 (771)
10 KOG0161 Myosin class II heavy 83.2 67 0.0015 39.9 18.4 95 256-353 958-1066(1930)
11 KOG0161 Myosin class II heavy 83.2 90 0.002 38.9 19.4 93 266-361 1235-1327(1930)
12 COG4942 Membrane-bound metallo 82.9 67 0.0015 33.9 20.3 130 190-327 96-230 (420)
13 PF09726 Macoilin: Transmembra 80.2 38 0.00082 37.8 14.1 96 242-338 423-519 (697)
14 PRK12704 phosphodiesterase; Pr 79.8 59 0.0013 35.0 15.0 91 274-365 98-201 (520)
15 COG1196 Smc Chromosome segrega 79.7 1.3E+02 0.0029 35.2 21.6 46 315-360 450-495 (1163)
16 KOG1029 Endocytic adaptor prot 77.3 75 0.0016 36.2 14.9 80 247-328 399-493 (1118)
17 KOG0250 DNA repair protein RAD 75.9 89 0.0019 36.6 15.5 87 237-326 372-462 (1074)
18 TIGR02169 SMC_prok_A chromosom 75.4 1.5E+02 0.0033 33.6 21.8 15 95-109 110-124 (1164)
19 PF12072 DUF3552: Domain of un 74.1 77 0.0017 29.6 14.3 13 199-211 44-56 (201)
20 KOG0995 Centromere-associated 72.0 1.6E+02 0.0035 32.3 18.5 82 280-361 419-500 (581)
21 PRK00409 recombination and DNA 71.5 99 0.0022 34.9 14.6 14 169-182 417-430 (782)
22 PRK00409 recombination and DNA 71.3 33 0.00072 38.6 10.9 64 244-307 502-565 (782)
23 TIGR03319 YmdA_YtgF conserved 71.1 1.4E+02 0.003 32.2 15.0 93 269-365 101-195 (514)
24 PRK11637 AmiB activator; Provi 70.1 1.4E+02 0.003 30.8 17.9 50 248-297 177-226 (428)
25 KOG0612 Rho-associated, coiled 69.7 1.8E+02 0.0038 34.8 16.1 55 284-341 722-776 (1317)
26 PF07888 CALCOCO1: Calcium bin 69.0 1.8E+02 0.0039 31.8 16.6 8 168-175 109-116 (546)
27 PF05262 Borrelia_P83: Borreli 67.1 1.9E+02 0.0041 31.2 16.1 39 59-111 75-113 (489)
28 KOG0977 Nuclear envelope prote 64.7 2.2E+02 0.0048 31.1 15.6 113 199-318 60-173 (546)
29 TIGR01069 mutS2 MutS2 family p 61.7 1.8E+02 0.004 32.8 14.3 8 173-180 416-423 (771)
30 PF10146 zf-C4H2: Zinc finger- 60.4 1.6E+02 0.0036 28.4 11.9 48 233-281 4-51 (230)
31 PF05565 Sipho_Gp157: Siphovir 60.3 67 0.0014 29.1 8.8 78 281-365 3-80 (162)
32 PF05701 WEMBL: Weak chloropla 60.2 2.4E+02 0.0053 30.2 18.1 30 175-204 157-188 (522)
33 PF09730 BicD: Microtubule-ass 59.9 3E+02 0.0065 31.1 16.9 126 236-361 33-161 (717)
34 COG1579 Zn-ribbon protein, pos 58.8 1.9E+02 0.004 28.4 16.7 56 281-336 91-146 (239)
35 smart00787 Spc7 Spc7 kinetocho 56.9 1.9E+02 0.0041 29.1 12.2 103 227-331 136-242 (312)
36 PF00769 ERM: Ezrin/radixin/mo 56.6 1.9E+02 0.0042 27.9 15.0 71 265-335 35-106 (246)
37 PF10473 CENP-F_leu_zip: Leuci 55.5 1.6E+02 0.0034 26.5 13.5 86 236-328 16-104 (140)
38 KOG0933 Structural maintenance 54.2 4.4E+02 0.0094 31.2 17.5 66 167-232 653-721 (1174)
39 PHA02562 46 endonuclease subun 54.0 2.8E+02 0.0062 29.0 16.7 40 313-352 381-420 (562)
40 COG1196 Smc Chromosome segrega 53.8 4.3E+02 0.0094 31.1 20.5 33 223-255 695-727 (1163)
41 TIGR02168 SMC_prok_B chromosom 53.2 3.8E+02 0.0083 30.3 21.7 9 94-102 573-581 (1179)
42 PRK04863 mukB cell division pr 52.7 5.2E+02 0.011 31.7 17.6 14 331-344 417-430 (1486)
43 PRK10884 SH3 domain-containing 52.0 1.6E+02 0.0034 28.0 10.1 24 236-259 92-115 (206)
44 TIGR02168 SMC_prok_B chromosom 51.7 4E+02 0.0088 30.1 21.9 30 283-312 793-822 (1179)
45 KOG0996 Structural maintenance 51.0 5.1E+02 0.011 31.2 15.5 131 188-332 472-602 (1293)
46 PF03962 Mnd1: Mnd1 family; I 50.6 1.8E+02 0.004 27.0 10.2 89 240-346 79-167 (188)
47 KOG0994 Extracellular matrix g 50.1 5.4E+02 0.012 31.2 15.3 90 273-362 1465-1576(1758)
48 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.9 1.7E+02 0.0038 25.3 14.7 90 236-325 30-119 (132)
49 PLN03188 kinesin-12 family pro 49.8 1.2E+02 0.0026 36.3 10.5 79 250-330 1161-1252(1320)
50 KOG4661 Hsp27-ERE-TATA-binding 49.3 1E+02 0.0022 34.1 9.2 40 267-310 651-690 (940)
51 PRK09039 hypothetical protein; 48.2 3.1E+02 0.0068 27.8 15.8 101 230-337 67-167 (343)
52 COG2715 SpmA Uncharacterized m 47.8 11 0.00023 35.6 1.6 26 49-74 76-101 (206)
53 PF08317 Spc7: Spc7 kinetochor 47.7 3E+02 0.0065 27.5 15.6 19 239-257 151-169 (325)
54 PF10174 Cast: RIM-binding pro 47.7 4.8E+02 0.01 29.8 14.6 20 221-240 30-49 (775)
55 PF00038 Filament: Intermediat 47.5 2.7E+02 0.006 27.0 17.5 22 318-339 283-304 (312)
56 PRK12705 hypothetical protein; 46.3 4.2E+02 0.009 28.7 15.1 111 232-361 25-135 (508)
57 PF07798 DUF1640: Protein of u 45.8 2.4E+02 0.0051 25.7 13.1 34 298-334 107-140 (177)
58 PF04156 IncA: IncA protein; 44.9 2.4E+02 0.0051 25.5 13.6 25 230-254 95-119 (191)
59 TIGR03185 DNA_S_dndD DNA sulfu 44.2 3.6E+02 0.0078 29.5 12.8 82 239-320 232-313 (650)
60 PF02050 FliJ: Flagellar FliJ 43.3 1.7E+02 0.0036 23.3 12.0 97 194-292 18-119 (123)
61 COG4877 Uncharacterized protei 43.3 25 0.00053 27.4 2.7 28 331-358 12-39 (63)
62 PRK03918 chromosome segregatio 41.9 5.4E+02 0.012 28.7 21.5 7 173-179 143-149 (880)
63 COG2433 Uncharacterized conser 40.7 5.6E+02 0.012 28.6 14.4 57 278-334 449-508 (652)
64 KOG0964 Structural maintenance 39.9 7.1E+02 0.015 29.6 15.1 140 161-305 100-252 (1200)
65 KOG2391 Vacuolar sorting prote 39.8 1.2E+02 0.0025 31.4 7.6 45 254-298 217-261 (365)
66 PF15290 Syntaphilin: Golgi-lo 37.4 1.2E+02 0.0026 30.6 7.1 58 299-363 67-124 (305)
67 PRK06569 F0F1 ATP synthase sub 37.3 2.5E+02 0.0054 25.7 8.7 52 240-293 65-117 (155)
68 PF04728 LPP: Lipoprotein leuc 37.2 1.6E+02 0.0035 22.7 6.2 43 308-354 4-46 (56)
69 TIGR03545 conserved hypothetic 36.7 1.8E+02 0.004 31.6 9.0 32 306-337 218-249 (555)
70 PF10174 Cast: RIM-binding pro 36.6 7E+02 0.015 28.5 16.4 129 195-330 294-422 (775)
71 PRK02224 chromosome segregatio 36.4 6.6E+02 0.014 28.2 21.1 47 295-342 577-623 (880)
72 PRK10884 SH3 domain-containing 35.9 2.1E+02 0.0046 27.2 8.3 12 247-258 96-107 (206)
73 KOG0999 Microtubule-associated 35.8 6.6E+02 0.014 28.0 15.1 78 237-317 107-190 (772)
74 PF07246 Phlebovirus_NSM: Phle 35.0 4.1E+02 0.0089 26.5 10.3 38 321-358 198-235 (264)
75 PHA02562 46 endonuclease subun 34.6 5.6E+02 0.012 26.8 19.8 18 168-185 143-160 (562)
76 PF04624 Dec-1: Dec-1 repeat; 33.4 40 0.00086 22.3 2.1 14 341-354 9-22 (27)
77 TIGR03545 conserved hypothetic 31.7 4.7E+02 0.01 28.6 11.1 49 315-363 213-261 (555)
78 PRK05689 fliJ flagellar biosyn 31.6 3.4E+02 0.0074 23.5 11.8 74 265-338 23-102 (147)
79 PRK00247 putative inner membra 31.5 3.8E+02 0.0083 28.4 10.1 58 308-365 321-380 (429)
80 KOG0976 Rho/Rac1-interacting s 30.5 9.4E+02 0.02 28.2 14.4 120 205-331 262-392 (1265)
81 PRK15396 murein lipoprotein; P 30.4 1.6E+02 0.0035 24.0 5.6 43 308-354 26-68 (78)
82 PF06637 PV-1: PV-1 protein (P 30.4 6.7E+02 0.015 26.6 11.3 95 240-338 281-387 (442)
83 PHA02940 hypothetical protein; 29.9 3.4E+02 0.0074 27.2 8.7 83 281-363 9-91 (315)
84 PF07798 DUF1640: Protein of u 29.8 4.3E+02 0.0093 24.0 13.9 25 234-258 70-94 (177)
85 PRK11637 AmiB activator; Provi 29.8 6.4E+02 0.014 26.0 22.8 39 270-308 178-216 (428)
86 PF09731 Mitofilin: Mitochondr 29.6 7.2E+02 0.016 26.6 16.6 28 245-272 259-286 (582)
87 TIGR02231 conserved hypothetic 29.3 3.2E+02 0.007 28.9 9.3 16 270-285 93-108 (525)
88 TIGR03319 YmdA_YtgF conserved 29.3 7.5E+02 0.016 26.7 18.9 73 274-351 92-164 (514)
89 KOG0579 Ste20-like serine/thre 28.8 5.3E+02 0.011 29.6 10.8 77 225-301 836-949 (1187)
90 PF04111 APG6: Autophagy prote 28.5 6.2E+02 0.013 25.4 11.0 26 253-278 55-80 (314)
91 PRK07720 fliJ flagellar biosyn 28.5 3.9E+02 0.0085 23.2 9.7 69 229-299 77-145 (146)
92 PF12777 MT: Microtubule-bindi 28.2 3.7E+02 0.0081 27.0 9.1 59 273-331 23-81 (344)
93 PF07111 HCR: Alpha helical co 28.2 9.3E+02 0.02 27.4 17.7 91 249-345 138-228 (739)
94 PF04094 DUF390: Protein of un 28.1 4.3E+02 0.0092 30.1 10.0 86 265-360 392-492 (828)
95 PF06637 PV-1: PV-1 protein (P 27.2 7.7E+02 0.017 26.1 12.2 49 239-287 319-367 (442)
96 PF15066 CAGE1: Cancer-associa 26.4 1.9E+02 0.0041 31.1 6.8 58 279-339 358-418 (527)
97 KOG2391 Vacuolar sorting prote 26.3 2.9E+02 0.0062 28.7 7.8 15 13-27 19-33 (365)
98 PF05837 CENP-H: Centromere pr 25.6 3.3E+02 0.0072 22.9 7.0 30 321-350 58-99 (106)
99 PF10481 CENP-F_N: Cenp-F N-te 25.0 7.4E+02 0.016 25.1 10.5 66 272-337 63-132 (307)
100 cd08779 Death_PIDD Death Domai 24.8 82 0.0018 25.6 3.1 33 332-364 41-76 (86)
101 KOG2264 Exostosin EXT1L [Signa 24.4 3.6E+02 0.0079 30.1 8.5 70 236-340 78-147 (907)
102 PRK13182 racA polar chromosome 24.1 3.8E+02 0.0082 24.8 7.7 20 278-298 118-137 (175)
103 KOG1899 LAR transmembrane tyro 24.0 1.1E+03 0.024 26.8 13.5 19 62-80 6-26 (861)
104 PF02183 HALZ: Homeobox associ 24.0 2.9E+02 0.0062 20.1 5.4 37 242-282 3-39 (45)
105 PF02841 GBP_C: Guanylate-bind 23.5 7.1E+02 0.015 24.4 11.6 16 12-27 3-18 (297)
106 KOG1103 Predicted coiled-coil 23.4 3.7E+02 0.008 28.2 8.0 51 212-262 209-263 (561)
107 PF09731 Mitofilin: Mitochondr 23.1 9.4E+02 0.02 25.7 17.5 77 246-323 343-421 (582)
108 PF06428 Sec2p: GDP/GTP exchan 23.0 3.3E+02 0.0072 23.1 6.5 28 231-258 2-29 (100)
109 PF05667 DUF812: Protein of un 22.9 3.6E+02 0.0077 29.8 8.3 39 306-344 393-432 (594)
110 PF11932 DUF3450: Protein of u 22.8 6.7E+02 0.015 23.9 12.7 59 261-319 76-143 (251)
111 KOG0964 Structural maintenance 22.8 8.2E+02 0.018 29.1 11.1 19 93-111 107-125 (1200)
112 PF13747 DUF4164: Domain of un 22.7 4.4E+02 0.0095 21.7 7.1 54 308-362 16-69 (89)
113 PF11802 CENP-K: Centromere-as 22.6 2.4E+02 0.0052 28.2 6.3 53 239-291 91-143 (268)
114 PF14992 TMCO5: TMCO5 family 22.6 4.5E+02 0.0098 26.4 8.3 69 260-328 61-137 (280)
115 COG2960 Uncharacterized protei 22.1 3.4E+02 0.0073 23.4 6.3 28 270-297 57-84 (103)
116 PF04576 Zein-binding: Zein-bi 21.8 5E+02 0.011 22.0 8.2 80 239-330 8-93 (94)
117 PF10473 CENP-F_leu_zip: Leuci 21.8 5.9E+02 0.013 22.9 16.0 92 238-333 25-116 (140)
118 KOG0804 Cytoplasmic Zn-finger 21.8 6.8E+02 0.015 27.0 9.7 16 274-289 349-364 (493)
119 PF07888 CALCOCO1: Calcium bin 21.8 1.1E+03 0.024 26.0 19.5 28 228-255 176-203 (546)
120 PRK04863 mukB cell division pr 21.6 1.6E+03 0.034 27.8 18.6 26 306-331 375-400 (1486)
121 COG5462 Predicted secreted (pe 21.4 1.7E+02 0.0036 26.4 4.5 42 274-315 13-54 (138)
122 COG1579 Zn-ribbon protein, pos 21.2 7.9E+02 0.017 24.1 16.3 20 192-211 28-47 (239)
123 PF14362 DUF4407: Domain of un 21.2 7.7E+02 0.017 24.0 15.9 66 272-340 189-254 (301)
124 PF08826 DMPK_coil: DMPK coile 21.2 4E+02 0.0087 20.7 7.3 56 199-258 5-60 (61)
125 PF05667 DUF812: Protein of un 21.2 1.1E+03 0.025 25.9 16.3 19 302-320 403-421 (594)
126 PF12072 DUF3552: Domain of un 20.8 6.8E+02 0.015 23.2 18.6 54 272-325 92-145 (201)
127 COG1318 Predicted transcriptio 20.6 7.3E+02 0.016 23.5 9.1 31 249-279 124-154 (182)
128 COG2433 Uncharacterized conser 20.3 1.2E+03 0.027 26.1 11.5 58 260-317 448-505 (652)
No 1
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=99.23 E-value=8.8e-12 Score=89.12 Aligned_cols=44 Identities=30% Similarity=0.307 Sum_probs=32.0
Q ss_pred CCcCCCCCCCCh-HHHHHHHHcCCccCCcCCCCCCCCCCCCCCCccCCCCCCCcHHHHH
Q 017472 51 AFNDVDVEDPDI-ESIQALAEAGVIPSQLLGKHYGSDGSKGQGGIYFFPERFISRYDLI 108 (371)
Q Consensus 51 aF~DV~~~hp~~-~~IqalaeaGIIsG~lsg~~~~~~~~d~~~~~~F~Pd~pITRqEma 108 (371)
.|+||+..+|+| .+|+.|++.|||.|+ ++++|+|+++|||+|||
T Consensus 1 ~F~Dv~~~~~~~a~~i~~~~~~gi~~G~--------------~~~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYAEAIQWLYQLGIISGY--------------SDGTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTTHHHHHHHHTTSS-----------------TTS---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHcCCcccC--------------CCCeECCCCCcCHHHhC
Confidence 599999999966 999999999999987 35799999999999986
No 2
>PF00395 SLH: S-layer homology domain; InterPro: IPR001119 S-layers are paracrystalline mono-layered assemblies of (glyco)proteins which coat the surface of bacteria [, ]. Several S-layer proteins and some other cell wall proteins contain one or more copies of a domain of about 50-60 residues, which has been called SLH (for S-layer homology). Although it was originally proposed that SLH domains bind to peptidoglycan, it is now evident that pyruvylated secondary cell wall polymers (SCWPs), which are either teichoic acids, teichuronic acids, lipoteichoic acids or lipoglycans, serve as the anchoring structures for SLH motifs in the Gram-positive cell wall [, ]. However, the study of S-layer protein SbpA of Bacillus sphaericus revealed that SLH motifs are not sufficient for specific binding to SCWPs. Thus, the molecular basis explaining SLH affinity and specificity of interaction with cell wall polymers are not completely elucidated [].; PDB: 3PYW_A.
Probab=98.37 E-value=2.3e-07 Score=66.19 Aligned_cols=43 Identities=35% Similarity=0.418 Sum_probs=26.8
Q ss_pred CccccccccH-HHHHHHHHhHhhhhccccccccCCC-ccccCCCCCcHHHHH
Q 017472 132 SYMDVREINS-EASLGLFMDMLAGEKSIARRVFGQS-KRFQPNKPSTKAQAA 181 (371)
Q Consensus 132 ~F~Dv~~I~~-~a~~av~a~l~aG~~~II~~~fG~~-~~F~P~kpVTRAEAA 181 (371)
+|.|++.+++ |+ .+|.... ..|||. |++ ++|+|++++||+|+|
T Consensus 1 ~F~Dv~~~~~~~a-~~i~~~~---~~gi~~---G~~~~~f~P~~~iTR~e~A 45 (45)
T PF00395_consen 1 PFKDVPSISWAYA-EAIQWLY---QLGIIS---GYSDGTFNPNDPITRAEAA 45 (45)
T ss_dssp -BTTB-TTSSSTT-HHHHHHH---HTTSS------TTS---TTSB-BHHHHH
T ss_pred CCCCCCCCcHHHH-HHHHHHH---HcCCcc---cCCCCeECCCCCcCHHHhC
Confidence 4899999976 44 7777653 567887 865 589999999999997
No 3
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.31 E-value=1.9 Score=43.13 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=102.7
Q ss_pred cccCCCCCcHHHHHHHHH--hchhhccccHHHhHHHHHHhhHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhHHHHHHH
Q 017472 168 RFQPNKPSTKAQAAVALT--SGRMAKAISNELSRLEAERSSRQAEMAEIRSQLFDSGDIQRWWDKKFSEERARGFEVEKL 245 (371)
Q Consensus 168 ~F~P~kpVTRAEAAa~L~--~g~~~~~i~~eL~rleae~~~~~~~~~~~~~~~~~~~di~~~w~~~~~~e~~~~~~~e~~ 245 (371)
.|+=-|.-+|.+|-...| +....+++-..|.. +-+ .|..+..........
T Consensus 123 q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~---------------~~~-------------~L~~D~~~L~~~~~~ 174 (325)
T PF08317_consen 123 QFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEE---------------NLE-------------LLQEDYAKLDKQLEQ 174 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH-------------HHHHHHHHHHHHHHH
Confidence 466667778888877766 55566666666655 111 122222333333333
Q ss_pred HHHHHhHHHHHHHHHHHhhHHhhhhhhH-HH-HHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhh
Q 017472 246 YIAARCDLEEELIVQEKNYAEDLKEKAA-MD-CQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGL 323 (371)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~~~~k~~aa-~~-~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~ 323 (371)
+..++..|......=.++. ..||.... ++ |-.+.|..||.++.++-..+...|-++..=+..++.+..+++.-.+..
T Consensus 175 l~~~~~~l~~~~~~L~~e~-~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 175 LDELLPKLRERKAELEEEL-ENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333222222 22333322 33 778889999999888888888888777777777777777776666666
Q ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 017472 324 LDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEEVT 362 (371)
Q Consensus 324 ~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le~~~ 362 (371)
.+++.++..=.+-+.--|.|-..|..+-++.-+.|+.-.
T Consensus 254 ~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~ 292 (325)
T PF08317_consen 254 QELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 666666554444555678999999999999999998653
No 4
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.79 E-value=6.6 Score=39.45 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=105.7
Q ss_pred cccCCCCCcHHHHHHHHH--hchhhccccHHHhHHHHHHhhHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhHHHHHHH
Q 017472 168 RFQPNKPSTKAQAAVALT--SGRMAKAISNELSRLEAERSSRQAEMAEIRSQLFDSGDIQRWWDKKFSEERARGFEVEKL 245 (371)
Q Consensus 168 ~F~P~kpVTRAEAAa~L~--~g~~~~~i~~eL~rleae~~~~~~~~~~~~~~~~~~~di~~~w~~~~~~e~~~~~~~e~~ 245 (371)
.|+=-|.-+|.+|-.+-| +-...+++-..|.+ +-+ .|..+.......+.+
T Consensus 118 Qf~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~---------------~~~-------------~l~~D~~~L~~~~~~ 169 (312)
T smart00787 118 QFQLVKTFARLEAKKMWYEWRMKLLEGLKEGLDE---------------NLE-------------GLKEDYKLLMKELEL 169 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH-------------HHHHHHHHHHHHHHH
Confidence 677788889999988877 55566666666665 111 122223333333333
Q ss_pred HHHHHhHHHHHHHHHHHhhHHhhhhhhHH-HHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhh
Q 017472 246 YIAARCDLEEELIVQEKNYAEDLKEKAAM-DCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLL 324 (371)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~~~~k~~aa~-~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~ 324 (371)
+..++-+|.+....=..+...|-+....+ .|--..|..||.++.++...+...+-++..=+..++.+...++...+...
T Consensus 170 l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~ 249 (312)
T smart00787 170 LNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS 249 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333333333333443 56778899999999999888888877777666677777666666665555
Q ss_pred hhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 017472 325 DTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEEVT 362 (371)
Q Consensus 325 ~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le~~~ 362 (371)
+++.++-.-.+=+-.-|.|--.|+.+=++.-+.|+...
T Consensus 250 e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~ 287 (312)
T smart00787 250 ELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 55555544444444568999999999999999988653
No 5
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.46 E-value=23 Score=39.47 Aligned_cols=138 Identities=22% Similarity=0.265 Sum_probs=73.8
Q ss_pred cccHHHhHHHHHHhhHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHH---HHHHHhhHHhh
Q 017472 192 AISNELSRLEAERSSRQAEMAEIRSQLFDSGDIQRWWDKKFSEERARGFEVEKLYIAARCDLEEEL---IVQEKNYAEDL 268 (371)
Q Consensus 192 ~i~~eL~rleae~~~~~~~~~~~~~~~~~~~di~~~w~~~~~~e~~~~~~~e~~~~~~~~~l~~~~---~~~~~~~~~~~ 268 (371)
-+..|+.+|.+|-.+-..+=.|+++++-.-.-..+.-..+|..=|..-+.++.-+.....-....| .-=|+-+.+..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888666666666677774321112233344444445555555555555544444443 33455566666
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHhhh----hhhhchhhhhhhh---------HHHHHHHHHHhhhhhhhhhhhH
Q 017472 269 KEKAAMDCQRQLLLNLKDEVDEMSGRL----ESERATYVAEKCT---------LQDTLSDLQTKLEGLLDTKSRS 330 (371)
Q Consensus 269 k~~aa~~~~~~~l~~l~~ev~~~~~~l----~~~~~~~~~e~~~---------~~~l~~~~~~~~~~~~~~~~~l 330 (371)
+-|+.+|.|-...-+=|.+-++...+= .+.|. -..|.++ +.+|+.|+..+.+.+..+..++
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~-e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ-ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666665555444433321 11111 2233222 6667777777776666665544
No 6
>PRK00106 hypothetical protein; Provisional
Probab=89.83 E-value=33 Score=37.17 Aligned_cols=53 Identities=9% Similarity=0.126 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhh
Q 017472 273 AMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLD 325 (371)
Q Consensus 273 a~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~ 325 (371)
.++...+.|.+-..+++...+.|...+-++-.-+..++++..+...+.+.++.
T Consensus 112 ~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 112 SLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444444444444444444444444444444444444444443
No 7
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=17 Score=40.96 Aligned_cols=86 Identities=24% Similarity=0.223 Sum_probs=50.5
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHH------hhHHHHHHHHhhhhhhhchhhhh
Q 017472 232 FSEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLL------NLKDEVDEMSGRLESERATYVAE 305 (371)
Q Consensus 232 ~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~------~l~~ev~~~~~~l~~~~~~~~~e 305 (371)
...||.+..++||.++.-| |||+.|.++.+ |++-.+|.-++.|- +=|--+.||+-.---+.-.|+++
T Consensus 363 qEqErk~qlElekqLerQR-eiE~qrEEerk------keie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~ 435 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLERQR-EIERQREEERK------KEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYL 435 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4567788888888877644 67777765554 33333333333333 33445667766666666677777
Q ss_pred hhhHHHH---HHHHHHhhhhhh
Q 017472 306 KCTLQDT---LSDLQTKLEGLL 324 (371)
Q Consensus 306 ~~~~~~l---~~~~~~~~~~~~ 324 (371)
+.+.-.| ++.++.|++.++
T Consensus 436 nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7666555 344455555544
No 8
>PRK00106 hypothetical protein; Provisional
Probab=86.04 E-value=52 Score=35.65 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=12.7
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHhhhhh
Q 017472 269 KEKAAMDCQRQLLLNLKDEVDEMSGRLES 297 (371)
Q Consensus 269 k~~aa~~~~~~~l~~l~~ev~~~~~~l~~ 297 (371)
+....++.+.+.|...+.+++++.+.+..
T Consensus 122 krE~eLe~kekeLe~reeeLee~~~~~~~ 150 (535)
T PRK00106 122 SKEKTLESKEQSLTDKSKHIDEREEQVEK 150 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444333
No 9
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=85.13 E-value=7.2 Score=43.69 Aligned_cols=64 Identities=13% Similarity=-0.002 Sum_probs=43.5
Q ss_pred HHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhh
Q 017472 244 KLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKC 307 (371)
Q Consensus 244 ~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~ 307 (371)
...+.|+.-+.....+-++-+..|-.+|..++.+++.+.+++.|++...++|-.+.-+.-.+++
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666667777777777777877777777777777777666665555444
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=83.20 E-value=67 Score=39.88 Aligned_cols=95 Identities=20% Similarity=0.153 Sum_probs=46.0
Q ss_pred HHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 017472 256 ELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKE 335 (371)
Q Consensus 256 ~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~ 335 (371)
++...+..+-.|=++=+.++....-|.+.+.+++++++.|.+. +..+++.+..|.+.+..-.+.+.++...||-|++
T Consensus 958 Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~---l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~ 1034 (1930)
T KOG0161|consen 958 EKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDD---LQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR 1034 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333343444444455555666666666666666553 4444444444444443334444455555554444
Q ss_pred H--------------HHHHHHhHHHHHHHHHH
Q 017472 336 A--------------LRILRSWVEDEARKSQA 353 (371)
Q Consensus 336 a--------------l~~~r~w~e~ea~~~~~ 353 (371)
. |..++.|..+.-...++
T Consensus 1035 ~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~e 1066 (1930)
T KOG0161|consen 1035 IRMELEKAKRKLEGELKDLQESIEELKKQKEE 1066 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3 34556666654433333
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=83.17 E-value=90 Score=38.85 Aligned_cols=93 Identities=24% Similarity=0.304 Sum_probs=68.0
Q ss_pred HhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHH
Q 017472 266 EDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVE 345 (371)
Q Consensus 266 ~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e 345 (371)
.+.+-+-++|.+...|..-=++++.+...|+..+...+.|-..+.+.+.+.+.+...+++.++.++.+.+=+ +.=.+
T Consensus 1235 ~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~qle 1311 (1930)
T KOG0161|consen 1235 DLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQLE 1311 (1930)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 333344445545444444445556666677888999999999999999999999999999999888876554 77788
Q ss_pred HHHHHHHHHHHHHHHH
Q 017472 346 DEARKSQARAKVLEEV 361 (371)
Q Consensus 346 ~ea~~~~~~a~~le~~ 361 (371)
+|.|+....+..|-.+
T Consensus 1312 ~e~r~k~~l~~~l~~l 1327 (1930)
T KOG0161|consen 1312 EETREKSALENALRQL 1327 (1930)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888777666444
No 12
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=82.87 E-value=67 Score=33.86 Aligned_cols=130 Identities=17% Similarity=0.146 Sum_probs=80.9
Q ss_pred hccccHHHhHHHHHHhhHHHHHHHHHhhhhhcch-----hhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 017472 190 AKAISNELSRLEAERSSRQAEMAEIRSQLFDSGD-----IQRWWDKKFSEERARGFEVEKLYIAARCDLEEELIVQEKNY 264 (371)
Q Consensus 190 ~~~i~~eL~rleae~~~~~~~~~~~~~~~~~~~d-----i~~~w~~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~ 264 (371)
...+...|..|+.+...+..+.+++-..+.-.|+ +--+-++... ....-.+|.+...++.+....-.+..
T Consensus 96 I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~ll~~~eda~~-----~~R~ai~~~~l~~~~~~~i~~l~~~~ 170 (420)
T COG4942 96 IADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQR-----SVRLAIYYGALNPARAERIDALKATL 170 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhhcChhhhhH-----HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3334445555666665555555554443332221 1112222222 23344567777777777777777777
Q ss_pred HHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhh
Q 017472 265 AEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTK 327 (371)
Q Consensus 265 ~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~ 327 (371)
..|-..|+.++.|+..|-.+..|..++.++|...+.| =+..+.+|.++++.+++.+..|+
T Consensus 171 ~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E---~kk~~~~l~~~l~~~q~~l~eL~ 230 (420)
T COG4942 171 KQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEE---RKKTLAQLNSELSADQKKLEELR 230 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999888765433 34556666677766665555443
No 13
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.17 E-value=38 Score=37.80 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=60.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHH-HHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhh
Q 017472 242 VEKLYIAARCDLEEELIVQEKNYAEDLKEKAAM-DCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKL 320 (371)
Q Consensus 242 ~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~-~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~ 320 (371)
+|.-....+.||.-.|.. |.|+-.-|--=..- -.=+..|..||.|.|++--++.+-.-.--.||+.|+-|-+.+..++
T Consensus 423 LE~dvkkLraeLq~~Rq~-E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQS-EQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHhhhhh-HHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666655552 22222221100000 1225568888888888777777777777778888888888888777
Q ss_pred hhhhhhhhhHHHHHHHHH
Q 017472 321 EGLLDTKSRSEAEKEALR 338 (371)
Q Consensus 321 ~~~~~~~~~le~e~~al~ 338 (371)
..-..+...|-.||+|-.
T Consensus 502 ~~R~~lEkQL~eErk~r~ 519 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARK 519 (697)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777777788888887644
No 14
>PRK12704 phosphodiesterase; Provisional
Probab=79.78 E-value=59 Score=34.98 Aligned_cols=91 Identities=22% Similarity=0.394 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhh-----------hhhHHHHHHHHHHHHH
Q 017472 274 MDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDT-----------KSRSEAEKEALRILRS 342 (371)
Q Consensus 274 ~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~-----------~~~le~e~~al~~~r~ 342 (371)
++...+.|.+...+++..-+.|...+-++-.-+..++++..+...+.+.++.+ +-+-++.+++-.+.|.
T Consensus 98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~ 177 (520)
T PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKE 177 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333333333444444444444444444332 2233455556666665
Q ss_pred hHHHHHHH-HHHHH-HHHHHHhccc
Q 017472 343 WVEDEARK-SQARA-KVLEEVTRRW 365 (371)
Q Consensus 343 w~e~ea~~-~~~~a-~~le~~~~~w 365 (371)
.|+||+. +...| ++|-.|-+|.
T Consensus 178 -~~~~~~~~a~~~a~~i~~~a~qr~ 201 (520)
T PRK12704 178 -IEEEAKEEADKKAKEILAQAIQRC 201 (520)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444443 22222 3455555554
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=79.70 E-value=1.3e+02 Score=35.23 Aligned_cols=46 Identities=30% Similarity=0.291 Sum_probs=24.9
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017472 315 DLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEE 360 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le~ 360 (371)
.++..++.+.+-...++.+...+.....=++++....+.+-..|+.
T Consensus 450 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 495 (1163)
T COG1196 450 ELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEA 495 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555566666666665555554
No 16
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.32 E-value=75 Score=36.25 Aligned_cols=80 Identities=20% Similarity=0.266 Sum_probs=41.1
Q ss_pred HHHHhHHHHHHH---------------HHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHH
Q 017472 247 IAARCDLEEELI---------------VQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQD 311 (371)
Q Consensus 247 ~~~~~~l~~~~~---------------~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~ 311 (371)
+.|+.|||+.|. .||++-..++|.|-+ .=.+.|.-|........++|.--|+.|..-|..|+.
T Consensus 399 Eaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~--ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~ 476 (1118)
T KOG1029|consen 399 EAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKK--QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEE 476 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHH
Confidence 567777776543 244444555554432 223345555555555666666556666555555555
Q ss_pred HHHHHHHhhhhhhhhhh
Q 017472 312 TLSDLQTKLEGLLDTKS 328 (371)
Q Consensus 312 l~~~~~~~~~~~~~~~~ 328 (371)
+.+.++...-++.++|.
T Consensus 477 ~~~q~e~~isei~qlqa 493 (1118)
T KOG1029|consen 477 VTKQRELMISEIDQLQA 493 (1118)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 54444444333333333
No 17
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.94 E-value=89 Score=36.58 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=53.5
Q ss_pred HhHHHHHHHHHHHHhHH----HHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHH
Q 017472 237 ARGFEVEKLYIAARCDL----EEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDT 312 (371)
Q Consensus 237 ~~~~~~e~~~~~~~~~l----~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l 312 (371)
.+...++|....+..++ ..++.+++..+.-|=++...++. ++..|+.|.++..+.+....-+-...+..+-.|
T Consensus 372 ~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l 448 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKEKAKEEEEEKEHIEGEILQL 448 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44445555555554433 45556666666666666666665 567777777777777666666666666666666
Q ss_pred HHHHHHhhhhhhhh
Q 017472 313 LSDLQTKLEGLLDT 326 (371)
Q Consensus 313 ~~~~~~~~~~~~~~ 326 (371)
++.+++....|-++
T Consensus 449 ~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 449 RKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666555444
No 18
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=75.38 E-value=1.5e+02 Score=33.63 Aligned_cols=15 Identities=7% Similarity=0.352 Sum_probs=7.9
Q ss_pred cCCCCCCCcHHHHHH
Q 017472 95 YFFPERFISRYDLIN 109 (371)
Q Consensus 95 ~F~Pd~pITRqEma~ 109 (371)
+|--+.++|..++..
T Consensus 110 ~~~n~~~~~~~~~~~ 124 (1164)
T TIGR02169 110 YYLNGQRVRLSEIHD 124 (1164)
T ss_pred EEECCccccHHHHHH
Confidence 444445566666543
No 19
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=74.05 E-value=77 Score=29.56 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=6.5
Q ss_pred HHHHHHhhHHHHH
Q 017472 199 RLEAERSSRQAEM 211 (371)
Q Consensus 199 rleae~~~~~~~~ 211 (371)
+-+|++....+..
T Consensus 44 ~~eAe~~~ke~~~ 56 (201)
T PF12072_consen 44 EREAEAIKKEAEL 56 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555544444
No 20
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=72.03 E-value=1.6e+02 Score=32.33 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=64.2
Q ss_pred HHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017472 280 LLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLE 359 (371)
Q Consensus 280 ~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le 359 (371)
+--.|.+.+|+....+.....+-+..++.+..+-+.++.+.+.+..++.+|--=-.=..+.|-=+++|-++.+.+.+-||
T Consensus 419 V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le 498 (581)
T KOG0995|consen 419 VKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLE 498 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788889999998888888888899999989998888888877777642222234668889999999999998888
Q ss_pred HH
Q 017472 360 EV 361 (371)
Q Consensus 360 ~~ 361 (371)
+-
T Consensus 499 ~~ 500 (581)
T KOG0995|consen 499 EE 500 (581)
T ss_pred HH
Confidence 63
No 21
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.46 E-value=99 Score=34.90 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=7.5
Q ss_pred ccCCCCCcHHHHHH
Q 017472 169 FQPNKPSTKAQAAV 182 (371)
Q Consensus 169 F~P~kpVTRAEAAa 182 (371)
|.-.+|..++..+.
T Consensus 417 ~~GtDp~eg~ala~ 430 (782)
T PRK00409 417 GAGTDPDEGAALAI 430 (782)
T ss_pred CCCCCHHHHHHHHH
Confidence 44455555666543
No 22
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.27 E-value=33 Score=38.58 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=41.4
Q ss_pred HHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhh
Q 017472 244 KLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKC 307 (371)
Q Consensus 244 ~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~ 307 (371)
.+.+.|+.-+.....+-++-...|-++|..++.+++.+..++.|+++..+.|..++-++-.+++
T Consensus 502 ~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 565 (782)
T PRK00409 502 NIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEED 565 (782)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555566666777777777777777777777777776666655544443
No 23
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=71.05 E-value=1.4e+02 Score=32.19 Aligned_cols=93 Identities=23% Similarity=0.315 Sum_probs=37.8
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHH
Q 017472 269 KEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEA 348 (371)
Q Consensus 269 k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea 348 (371)
+....++.+.+.|.....+++++.+.+.....+...+-+++..|..+ |.+.+=+.+ -+-++..++-.+.|-. |+||
T Consensus 101 kre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~-eak~~l~~~--~~~~~~~~~~~~~~~~-~~~~ 176 (514)
T TIGR03319 101 KKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE-EAKEILLEE--VEEEARHEAAKLIKEI-EEEA 176 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHH--HHHHHHHHHHHHHHHH-HHHH
Confidence 33344444444455555555544444443333333222222222221 222222222 2334455566666654 3333
Q ss_pred HH-HHHHH-HHHHHHhccc
Q 017472 349 RK-SQARA-KVLEEVTRRW 365 (371)
Q Consensus 349 ~~-~~~~a-~~le~~~~~w 365 (371)
+. +...| ++|-.|-+|.
T Consensus 177 ~~~a~~~a~~i~~~aiqr~ 195 (514)
T TIGR03319 177 KEEADKKAKEILATAIQRY 195 (514)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 32 22222 3555555554
No 24
>PRK11637 AmiB activator; Provisional
Probab=70.07 E-value=1.4e+02 Score=30.83 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=22.1
Q ss_pred HHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhh
Q 017472 248 AARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLES 297 (371)
Q Consensus 248 ~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~ 297 (371)
..+.+|+..+.+-++....+-..++.++.++.-|...+.+-...++.|.+
T Consensus 177 ~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~ 226 (428)
T PRK11637 177 QTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLES 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444433
No 25
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=69.72 E-value=1.8e+02 Score=34.80 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 017472 284 LKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILR 341 (371)
Q Consensus 284 l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r 341 (371)
|..++.++++- -++-+...++++.+|....+.....+.+|++-||.|..+=.++.
T Consensus 722 ~~~~i~~e~e~---L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~ 776 (1317)
T KOG0612|consen 722 LLLEIEAELEY---LSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQ 776 (1317)
T ss_pred HHHHHHHHHHH---HhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33344444443 35566777889999999999999999999999999998755553
No 26
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=69.04 E-value=1.8e+02 Score=31.77 Aligned_cols=8 Identities=38% Similarity=0.754 Sum_probs=6.1
Q ss_pred cccCCCCC
Q 017472 168 RFQPNKPS 175 (371)
Q Consensus 168 ~F~P~kpV 175 (371)
.|+|.+|+
T Consensus 109 qf~~~~p~ 116 (546)
T PF07888_consen 109 QFRAPKPL 116 (546)
T ss_pred ccCCCCcc
Confidence 78887774
No 27
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=67.07 E-value=1.9e+02 Score=31.20 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=24.0
Q ss_pred CCChHHHHHHHHcCCccCCcCCCCCCCCCCCCCCCccCCCCCCCcHHHHHHHH
Q 017472 59 DPDIESIQALAEAGVIPSQLLGKHYGSDGSKGQGGIYFFPERFISRYDLINWK 111 (371)
Q Consensus 59 hp~~~~IqalaeaGIIsG~lsg~~~~~~~~d~~~~~~F~Pd~pITRqEma~~k 111 (371)
+-.+.+|-.+- -||+|||.+ ..-|.|.+.-|=..++.+.
T Consensus 75 ~a~vdhI~nlr--rIiagyl~~------------aygY~~~~a~~lA~fit~Y 113 (489)
T PF05262_consen 75 NARVDHINNLR--RIIAGYLEA------------AYGYSDEDAETLATFITIY 113 (489)
T ss_pred CCCccHHHHHH--HHHHHHHHH------------hcCCChhhHHHHHHHHHHH
Confidence 34566777664 478888763 2346677766666666543
No 28
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=64.67 E-value=2.2e+02 Score=31.15 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=68.1
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhc-chhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHH
Q 017472 199 RLEAERSSRQAEMAEIRSQLFDS-GDIQRWWDKKFSEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQ 277 (371)
Q Consensus 199 rleae~~~~~~~~~~~~~~~~~~-~di~~~w~~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~ 277 (371)
.|||||.+=..-...++..+-.. |-|+..|+.++..=|.-..+..+--..+..++-+++.+=..- |.-++..
T Consensus 60 ~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~el-------r~~~~~~ 132 (546)
T KOG0977|consen 60 FLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKEL-------RKKLEKA 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHH
Confidence 47888888877777777766554 669999999998877777776666666655555555432221 1122222
Q ss_pred HHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHH
Q 017472 278 RQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQT 318 (371)
Q Consensus 278 ~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~ 318 (371)
-+.+.--+.++++.+.+|..-..++..=+.++.+|..++..
T Consensus 133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~ 173 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKR 173 (546)
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 23333445556666666666666655555555555444333
No 29
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=61.69 E-value=1.8e+02 Score=32.79 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=3.3
Q ss_pred CCCcHHHH
Q 017472 173 KPSTKAQA 180 (371)
Q Consensus 173 kpVTRAEA 180 (371)
+|.+++..
T Consensus 416 D~~eg~al 423 (771)
T TIGR01069 416 DPDEGSAL 423 (771)
T ss_pred CHHHHHHH
Confidence 33444444
No 30
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=60.43 E-value=1.6e+02 Score=28.42 Aligned_cols=48 Identities=25% Similarity=0.132 Sum_probs=34.2
Q ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH
Q 017472 233 SEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLL 281 (371)
Q Consensus 233 ~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l 281 (371)
..=|.+..+++|+..+.+.+++..+.+. +-+.+|-+|+..+..|+-.+
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h 51 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAH 51 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3347888899999999999998877743 66666666666666665433
No 31
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=60.28 E-value=67 Score=29.07 Aligned_cols=78 Identities=27% Similarity=0.287 Sum_probs=54.2
Q ss_pred HHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017472 281 LLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEE 360 (371)
Q Consensus 281 l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le~ 360 (371)
|..|..+..+.++.+.++-..--.=.+.|+-+..+++.|-+.+..+--.++++.+|+ ..|++|-+++++.++.
T Consensus 3 LYel~~~~~~l~~~~e~~~~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~-------k~E~krL~~rkk~~e~ 75 (162)
T PF05565_consen 3 LYELTDEYLELLELLEEGDLDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAI-------KAEIKRLQERKKSIEN 75 (162)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 344444555444444342211111246788889999999999999988898888764 6899999999999887
Q ss_pred Hhccc
Q 017472 361 VTRRW 365 (371)
Q Consensus 361 ~~~~w 365 (371)
-..++
T Consensus 76 ~~~~L 80 (162)
T PF05565_consen 76 RIDRL 80 (162)
T ss_pred HHHHH
Confidence 76654
No 32
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=60.22 E-value=2.4e+02 Score=30.19 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=13.8
Q ss_pred CcHHHHHHHHH--hchhhccccHHHhHHHHHH
Q 017472 175 STKAQAAVALT--SGRMAKAISNELSRLEAER 204 (371)
Q Consensus 175 VTRAEAAa~L~--~g~~~~~i~~eL~rleae~ 204 (371)
+++++-|+... .....+.++.||.++...-
T Consensus 157 ~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l 188 (522)
T PF05701_consen 157 LKQAEEAVSAAEENEEKVEELSKEIIALKESL 188 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333 3344555555655554443
No 33
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=59.89 E-value=3e+02 Score=31.12 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=75.2
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHH---hhhhhhhchhhhhhhhHHHH
Q 017472 236 RARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMS---GRLESERATYVAEKCTLQDT 312 (371)
Q Consensus 236 ~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~---~~l~~~~~~~~~e~~~~~~l 312 (371)
+.++.++|.-+-.++++|.+-+++.+--....-.-+.+.++--..-.+||.|+.|.= +||+.+=.++-.|--.|||.
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKq 112 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQ 112 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 457777787788888888888887775444443344444444444467788888764 56888888888888888887
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017472 313 LSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEEV 361 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le~~ 361 (371)
-+-+-.-+=+..-+|-++..=.+=..++++=+||-++--.=--+=||||
T Consensus 113 vs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEA 161 (717)
T PF09730_consen 113 VSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEA 161 (717)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544433333333444444333444556666655444333233334444
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=58.80 E-value=1.9e+02 Score=28.37 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=22.3
Q ss_pred HHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 017472 281 LLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEA 336 (371)
Q Consensus 281 l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~a 336 (371)
+..|..|++--=++..+-.-+++.=.+++++|..+++.....+.++.-.+...+++
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~ 146 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR 146 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333333333333333444444444444444444444444433
No 35
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=56.89 E-value=1.9e+02 Score=29.14 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH---hhHHhhhhhhHHHHHHHHHHhhHHHHHHHH-hhhhhhhchh
Q 017472 227 WWDKKFSEERARGFEVEKLYIAARCDLEEELIVQEK---NYAEDLKEKAAMDCQRQLLLNLKDEVDEMS-GRLESERATY 302 (371)
Q Consensus 227 ~w~~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~---~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~-~~l~~~~~~~ 302 (371)
-|.-++.. --...++..++....+.+.+....+. -+..+.+..+.+..+...|..+..|++.-= .-|..-|-++
T Consensus 136 eWR~klle--gLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l 213 (312)
T smart00787 136 EWRMKLLE--GLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKL 213 (312)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHH
Confidence 35555543 33344455555555555544332222 223444555666666666666665553310 1122223334
Q ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 017472 303 VAEKCTLQDTLSDLQTKLEGLLDTKSRSE 331 (371)
Q Consensus 303 ~~e~~~~~~l~~~~~~~~~~~~~~~~~le 331 (371)
......++...++++..++.+..+...++
T Consensus 214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
No 36
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=56.60 E-value=1.9e+02 Score=27.92 Aligned_cols=71 Identities=27% Similarity=0.346 Sum_probs=41.7
Q ss_pred HHhh-hhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 017472 265 AEDL-KEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKE 335 (371)
Q Consensus 265 ~~~~-k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~ 335 (371)
+.+| .++--.+.+.+.|-.-+.+..++.++|......-..|+..|..-..+.+.+-..+.......+.|..
T Consensus 35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~ 106 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAE 106 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 3444567788999999999999999999999999889888877777777666555555544444443
No 37
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=55.46 E-value=1.6e+02 Score=26.54 Aligned_cols=86 Identities=24% Similarity=0.211 Sum_probs=37.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHH---HhhhhhhhchhhhhhhhHHHH
Q 017472 236 RARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEM---SGRLESERATYVAEKCTLQDT 312 (371)
Q Consensus 236 ~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~---~~~l~~~~~~~~~e~~~~~~l 312 (371)
+....-++.+++..-.+|+...++++.-....-..|+. +..|+.++..| +.+|-.+=+.++-|++.|.+.
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~e-------ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAE-------IETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555554444443322222222333 33333333333 233334444455566666555
Q ss_pred HHHHHHhhhhhhhhhh
Q 017472 313 LSDLQTKLEGLLDTKS 328 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~ 328 (371)
+.+.+.+-.++.-..+
T Consensus 89 lq~~q~kv~eLE~~~~ 104 (140)
T PF10473_consen 89 LQKKQEKVSELESLNS 104 (140)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 5555444444433333
No 38
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.18 E-value=4.4e+02 Score=31.23 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=34.5
Q ss_pred ccccCCCCCcH---HHHHHHHHhchhhccccHHHhHHHHHHhhHHHHHHHHHhhhhhcchhhHHHHHHH
Q 017472 167 KRFQPNKPSTK---AQAAVALTSGRMAKAISNELSRLEAERSSRQAEMAEIRSQLFDSGDIQRWWDKKF 232 (371)
Q Consensus 167 ~~F~P~kpVTR---AEAAa~L~~g~~~~~i~~eL~rleae~~~~~~~~~~~~~~~~~~~di~~~w~~~~ 232 (371)
+-|+|++.+|= -..|-+|..--....+..+|.-++.|=-+-....+.+-....+|.|+++-|+=++
T Consensus 653 DV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~ 721 (1174)
T KOG0933|consen 653 DVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKL 721 (1174)
T ss_pred ceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889988873 2334444432222222333333333333333344555556666888888887554
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=53.99 E-value=2.8e+02 Score=29.04 Aligned_cols=40 Identities=30% Similarity=0.369 Sum_probs=27.3
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 017472 313 LSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQ 352 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~ 352 (371)
+.+++.+...+..-+.+++-|++-..+++.++.+-.-+.+
T Consensus 381 l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~~~ 420 (562)
T PHA02562 381 LAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIKAS 420 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4555666666777777778887777788888776544443
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=53.84 E-value=4.3e+02 Score=31.12 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 017472 223 DIQRWWDKKFSEERARGFEVEKLYIAARCDLEE 255 (371)
Q Consensus 223 di~~~w~~~~~~e~~~~~~~e~~~~~~~~~l~~ 255 (371)
+....-...+..-+..+..+.+.++.+..++..
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1163)
T COG1196 695 NELRSLEDLLEELRRQLEELERQLEELKRELAA 727 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555556666666677766666666663
No 41
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=53.17 E-value=3.8e+02 Score=30.30 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=4.5
Q ss_pred ccCCCCCCC
Q 017472 94 IYFFPERFI 102 (371)
Q Consensus 94 ~~F~Pd~pI 102 (371)
-+|-|-+.|
T Consensus 573 ~~~l~l~~i 581 (1179)
T TIGR02168 573 VTFLPLDSI 581 (1179)
T ss_pred EEEeecccc
Confidence 355555444
No 42
>PRK04863 mukB cell division protein MukB; Provisional
Probab=52.72 E-value=5.2e+02 Score=31.72 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhH
Q 017472 331 EAEKEALRILRSWV 344 (371)
Q Consensus 331 e~e~~al~~~r~w~ 344 (371)
+..+..|.-++.|.
T Consensus 417 qq~i~~Le~~~~~~ 430 (1486)
T PRK04863 417 QQAVQALERAKQLC 430 (1486)
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444444
No 43
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.03 E-value=1.6e+02 Score=28.04 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=17.2
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHH
Q 017472 236 RARGFEVEKLYIAARCDLEEELIV 259 (371)
Q Consensus 236 ~~~~~~~e~~~~~~~~~l~~~~~~ 259 (371)
+.+..++|+-+.+++.+|.+.+.+
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 566677777788888777776643
No 44
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=51.68 E-value=4e+02 Score=30.12 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=12.6
Q ss_pred hhHHHHHHHHhhhhhhhchhhhhhhhHHHH
Q 017472 283 NLKDEVDEMSGRLESERATYVAEKCTLQDT 312 (371)
Q Consensus 283 ~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l 312 (371)
.++.++++.-+.+..-+.++..-+.+++.+
T Consensus 793 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 822 (1179)
T TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANL 822 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333344333
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.04 E-value=5.1e+02 Score=31.15 Aligned_cols=131 Identities=20% Similarity=0.156 Sum_probs=0.0
Q ss_pred hhhccccHHHhHHHHHHhhHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHh
Q 017472 188 RMAKAISNELSRLEAERSSRQAEMAEIRSQLFDSGDIQRWWDKKFSEERARGFEVEKLYIAARCDLEEELIVQEKNYAED 267 (371)
Q Consensus 188 ~~~~~i~~eL~rleae~~~~~~~~~~~~~~~~~~~di~~~w~~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~ 267 (371)
...+++++++..+|.|.+--..-..+.+.++ +..+.+|..=..+.+.+-+-++++..-|....+ .+
T Consensus 472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~-------~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~-------~~ 537 (1293)
T KOG0996|consen 472 QETEGIREEIEKLEKELMPLLKQVNEARSEL-------DVAESELDILLSRHETGLKKVEELKGKLLASSE-------SL 537 (1293)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Q ss_pred hhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHH
Q 017472 268 LKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEA 332 (371)
Q Consensus 268 ~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~ 332 (371)
-+.++.+..=+..|.+++.|..+....|..-+-+.-.=+..+.++...++.-.+.++..+|.-+|
T Consensus 538 ~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kV 602 (1293)
T KOG0996|consen 538 KEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKV 602 (1293)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
No 46
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.63 E-value=1.8e+02 Score=27.03 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHh
Q 017472 240 FEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTK 319 (371)
Q Consensus 240 ~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~ 319 (371)
..+++-..+....|+..+..|+.. .+|+.+-.+.+.|..-..++...|+.+. ....++|+++..++..-
T Consensus 79 ~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~~------~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 79 EELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKYS------ENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCHHHHHHHHHHHHHH
Confidence 334444445555555555555443 4454444444333333333333333221 23556777777777777
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhHHH
Q 017472 320 LEGLLDTKSRSEAEKEALRILRSWVED 346 (371)
Q Consensus 320 ~~~~~~~~~~le~e~~al~~~r~w~e~ 346 (371)
.+++.+-.- -+-++++|+-.
T Consensus 148 ~~~anrwTD-------NI~~l~~~~~~ 167 (188)
T PF03962_consen 148 KEAANRWTD-------NIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHh-------hHHHHHHHHHH
Confidence 766665443 23456666643
No 47
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.14 E-value=5.4e+02 Score=31.22 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhHHHHHHHH----------hhhhhh--hchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH--
Q 017472 273 AMDCQRQLLLNLKDEVDEMS----------GRLESE--RATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALR-- 338 (371)
Q Consensus 273 a~~~~~~~l~~l~~ev~~~~----------~~l~~~--~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~-- 338 (371)
.|+.-+++|-+|-.+|-+.| +.|+.+ .+++..+-+.|+.|-.+|......|.++-..|--=|--+.
T Consensus 1465 q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1465 QMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH
Confidence 45666666777766665543 233322 3456666777888877777776666665555433222111
Q ss_pred --------HHHHhHHHHHHHHHHHHHHHHHHh
Q 017472 339 --------ILRSWVEDEARKSQARAKVLEEVT 362 (371)
Q Consensus 339 --------~~r~w~e~ea~~~~~~a~~le~~~ 362 (371)
-+|+||+|.-..+..--..|++|-
T Consensus 1545 ~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1545 ENLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 246777777776666666676664
No 48
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.87 E-value=1.7e+02 Score=25.34 Aligned_cols=90 Identities=23% Similarity=0.296 Sum_probs=65.4
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHH
Q 017472 236 RARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSD 315 (371)
Q Consensus 236 ~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~ 315 (371)
+.-....-+.+.+|-...+++-...-.....|-+=|+.+..-...+..|+.+++..-..|...+.....++..|++=.++
T Consensus 30 ~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 30 REDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33334444455555555555555555556666666777777888888999999999999988888888889888888888
Q ss_pred HHHhhhhhhh
Q 017472 316 LQTKLEGLLD 325 (371)
Q Consensus 316 ~~~~~~~~~~ 325 (371)
++.+.+.+..
T Consensus 110 ~~~r~~dL~~ 119 (132)
T PF07926_consen 110 LEQRIEDLNE 119 (132)
T ss_pred HHHHHHHHHH
Confidence 8887776653
No 49
>PLN03188 kinesin-12 family protein; Provisional
Probab=49.84 E-value=1.2e+02 Score=36.26 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=56.2
Q ss_pred HhHHHHHHHHHHHhhHHhhhhhh-----------HHHHHHHHHHhhHHHHHHHHhhhhhhhchhh-hhhhhHHHHHHHHH
Q 017472 250 RCDLEEELIVQEKNYAEDLKEKA-----------AMDCQRQLLLNLKDEVDEMSGRLESERATYV-AEKCTLQDTLSDLQ 317 (371)
Q Consensus 250 ~~~l~~~~~~~~~~~~~~~k~~a-----------a~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~-~e~~~~~~l~~~~~ 317 (371)
-.||--+|.+||||..-|.+|-- ||..-=+||.+||+= |.--.++-+|...+ +|-+++-|...++.
T Consensus 1161 aae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~ea--eea~~~a~~r~~~~eqe~~~~~k~~~klk 1238 (1320)
T PLN03188 1161 AAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEA--EEALTVAQKRAMDAEQEAAEAYKQIDKLK 1238 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999988877754 455566899999863 33446676766543 45556666666777
Q ss_pred Hhh-hhhhhhhhhH
Q 017472 318 TKL-EGLLDTKSRS 330 (371)
Q Consensus 318 ~~~-~~~~~~~~~l 330 (371)
.|| .+|+-++-.|
T Consensus 1239 rkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1239 RKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHHHHHHHH
Confidence 777 7777777766
No 50
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=49.27 E-value=1e+02 Score=34.10 Aligned_cols=40 Identities=33% Similarity=0.260 Sum_probs=28.8
Q ss_pred hhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHH
Q 017472 267 DLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQ 310 (371)
Q Consensus 267 ~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~ 310 (371)
|-.+|--|+||+|-|-+=|-| +++|--+|+.|+.|...-+
T Consensus 651 l~~erlrle~qRQrLERErmE----rERLEreRM~ve~eRr~eq 690 (940)
T KOG4661|consen 651 LKAERLRLERQRQRLERERME----RERLERERMKVEEERRDEQ 690 (940)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcchh
Confidence 334566789999988776665 4678888888887765543
No 51
>PRK09039 hypothetical protein; Validated
Probab=48.23 E-value=3.1e+02 Score=27.82 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=56.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhH
Q 017472 230 KKFSEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTL 309 (371)
Q Consensus 230 ~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~ 309 (371)
+.+..++.+...++.-+...+..++..+..|+. +...+.+.+. ....+...+...-+.|...+.+|....-.+
T Consensus 67 e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~-Le~~~~~~~~------~~~~~~~~~~~l~~~L~~~k~~~se~~~~V 139 (343)
T PRK09039 67 DLLSLERQGNQDLQDSVANLRASLSAAEAERSR-LQALLAELAG------AGAAAEGRAGELAQELDSEKQVSARALAQV 139 (343)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhh------hcchHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345566777777766666666666644443321 1111111111 111222223333466777778888888888
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 017472 310 QDTLSDLQTKLEGLLDTKSRSEAEKEAL 337 (371)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~le~e~~al 337 (371)
..|..+++.=...+..++..|.+=++-.
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777777777666544443
No 52
>COG2715 SpmA Uncharacterized membrane protein, required for spore maturation in B.subtilis. [General function prediction only]
Probab=47.83 E-value=11 Score=35.64 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=20.2
Q ss_pred CCCCcCCCCCCCChHHHHHHHHcCCc
Q 017472 49 VAAFNDVDVEDPDIESIQALAEAGVI 74 (371)
Q Consensus 49 ~~aF~DV~~~hp~~~~IqalaeaGII 74 (371)
..-|.||||+||.-+||--=.-+.+.
T Consensus 76 ~~LFpdVpp~hpamG~i~~N~sAN~l 101 (206)
T COG2715 76 RRLFPDVPPGHPAMGYILMNMSANML 101 (206)
T ss_pred HHhCCCCCcCCchHHHHHHHHHHHhc
Confidence 46899999999999999755444433
No 53
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=47.70 E-value=3e+02 Score=27.49 Aligned_cols=19 Identities=11% Similarity=-0.167 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 017472 239 GFEVEKLYIAARCDLEEEL 257 (371)
Q Consensus 239 ~~~~e~~~~~~~~~l~~~~ 257 (371)
...++..+.....+.+.+.
T Consensus 151 ~~~L~~~~~~L~~D~~~L~ 169 (325)
T PF08317_consen 151 KEGLEENLELLQEDYAKLD 169 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 54
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=47.65 E-value=4.8e+02 Score=29.81 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=16.0
Q ss_pred cchhhHHHHHHHHHHHHhHH
Q 017472 221 SGDIQRWWDKKFSEERARGF 240 (371)
Q Consensus 221 ~~di~~~w~~~~~~e~~~~~ 240 (371)
-.+|..||..++..||....
T Consensus 30 ~~~i~~fwspElkrer~~rk 49 (775)
T PF10174_consen 30 MNSIKTFWSPELKRERALRK 49 (775)
T ss_pred HHhHhcccchhhHHHHHHHH
Confidence 45788899999999986554
No 55
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=47.50 E-value=2.7e+02 Score=26.96 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=17.0
Q ss_pred HhhhhhhhhhhhHHHHHHHHHH
Q 017472 318 TKLEGLLDTKSRSEAEKEALRI 339 (371)
Q Consensus 318 ~~~~~~~~~~~~le~e~~al~~ 339 (371)
.+.+.++++|--|+.|..+.+-
T Consensus 283 ~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 283 REYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3457888999999999887653
No 56
>PRK12705 hypothetical protein; Provisional
Probab=46.33 E-value=4.2e+02 Score=28.73 Aligned_cols=111 Identities=22% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHH
Q 017472 232 FSEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQD 311 (371)
Q Consensus 232 ~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~ 311 (371)
+...+..-...+++..+|..+-+..+ +.++-.-++....+|.+.+ +.+...|-++.....+|.+
T Consensus 25 ~~~~~~~~~~a~~~~~~a~~~a~~~~-------------~~~~~~~~~~~~~~~~~~e---~e~~~~~~~~~~~e~rl~~ 88 (508)
T PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKL-------------EAALLEAKELLLRERNQQR---QEARREREELQREEERLVQ 88 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 017472 312 TLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEEV 361 (371)
Q Consensus 312 l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le~~ 361 (371)
....++.+.+.+.+.+..|+...+.|.--..=++.- -+++...||+.
T Consensus 89 ~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~i 135 (508)
T PRK12705 89 KEEQLDARAEKLDNLENQLEEREKALSARELELEEL---EKQLDNELYRV 135 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 57
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=45.82 E-value=2.4e+02 Score=25.73 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=19.7
Q ss_pred hhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 017472 298 ERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEK 334 (371)
Q Consensus 298 ~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~ 334 (371)
-|+.+..||.++....+.++.+. .++.+.+..|.
T Consensus 107 ~klD~n~eK~~~r~e~~~~~~ki---~e~~~ki~~ei 140 (177)
T PF07798_consen 107 VKLDLNLEKGRIREEQAKQELKI---QELNNKIDTEI 140 (177)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 46666677777766666666653 33444444443
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=44.90 E-value=2.4e+02 Score=25.47 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=11.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHH
Q 017472 230 KKFSEERARGFEVEKLYIAARCDLE 254 (371)
Q Consensus 230 ~~~~~e~~~~~~~e~~~~~~~~~l~ 254 (371)
.++....++..+++..+......+.
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~ 119 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQ 119 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455544444444433333
No 59
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=44.23 E-value=3.6e+02 Score=29.50 Aligned_cols=82 Identities=12% Similarity=0.027 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHH
Q 017472 239 GFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQT 318 (371)
Q Consensus 239 ~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~ 318 (371)
...++.-...+...+++++......-..++.+|..++.+...+..=+.++...+-.++++..=...=..-|+.+...++.
T Consensus 232 i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~ 311 (650)
T TIGR03185 232 IAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQK 311 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHH
Confidence 44455555555666666666566666778888999999998888888888888888888876666656666666666665
Q ss_pred hh
Q 017472 319 KL 320 (371)
Q Consensus 319 ~~ 320 (371)
+.
T Consensus 312 e~ 313 (650)
T TIGR03185 312 EE 313 (650)
T ss_pred HH
Confidence 54
No 60
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=43.34 E-value=1.7e+02 Score=23.31 Aligned_cols=97 Identities=23% Similarity=0.267 Sum_probs=59.9
Q ss_pred cHHHhHHHHHHhhHHHHHHHHH-----hhhhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhh
Q 017472 194 SNELSRLEAERSSRQAEMAEIR-----SQLFDSGDIQRWWDKKFSEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDL 268 (371)
Q Consensus 194 ~~eL~rleae~~~~~~~~~~~~-----~~~~~~~di~~~w~~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~ 268 (371)
...|..|+.....-........ ..+.+..+.-......+.........+++-++.++..|-.-..++.+ ...|
T Consensus 18 ~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~--~e~L 95 (123)
T PF02050_consen 18 EEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK--LEKL 95 (123)
T ss_dssp HHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 3455555554444333332222 33334444445666666677777777888888888888776665555 8888
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHH
Q 017472 269 KEKAAMDCQRQLLLNLKDEVDEMS 292 (371)
Q Consensus 269 k~~aa~~~~~~~l~~l~~ev~~~~ 292 (371)
++|..-....+....=...+||+.
T Consensus 96 ~e~~~~~~~~~~~r~Eq~~lDE~a 119 (123)
T PF02050_consen 96 KERRREEYQQEEERREQKELDEIA 119 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887777777777777654
No 61
>COG4877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.28 E-value=25 Score=27.44 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017472 331 EAEKEALRILRSWVEDEARKSQARAKVL 358 (371)
Q Consensus 331 e~e~~al~~~r~w~e~ea~~~~~~a~~l 358 (371)
--|-+-+--+++|++||+|-..++-+.|
T Consensus 12 Rl~paiy~Aia~wA~de~RSiNaQIE~l 39 (63)
T COG4877 12 RLEPAIYAAIAQWAEDEFRSINAQIEIL 39 (63)
T ss_pred ecCHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3344555667999999999999988765
No 62
>PRK03918 chromosome segregation protein; Provisional
Probab=41.93 E-value=5.4e+02 Score=28.74 Aligned_cols=7 Identities=0% Similarity=0.254 Sum_probs=3.4
Q ss_pred CCCcHHH
Q 017472 173 KPSTKAQ 179 (371)
Q Consensus 173 kpVTRAE 179 (371)
.|-.|.+
T Consensus 143 ~~~~r~~ 149 (880)
T PRK03918 143 SDESREK 149 (880)
T ss_pred CcHHHHH
Confidence 4545544
No 63
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.71 E-value=5.6e+02 Score=28.62 Aligned_cols=57 Identities=9% Similarity=0.177 Sum_probs=32.4
Q ss_pred HHHHHhhHHHHHHHHhhhhhh---hchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 017472 278 RQLLLNLKDEVDEMSGRLESE---RATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEK 334 (371)
Q Consensus 278 ~~~l~~l~~ev~~~~~~l~~~---~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~ 334 (371)
+..+..|+++++++-.++-.+ .-+|-.=..++.+|..+++++...+.+|+-.|+-=+
T Consensus 449 k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 449 KREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444311 123333345677788888888877777777766444
No 64
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.87 E-value=7.1e+02 Score=29.56 Aligned_cols=140 Identities=21% Similarity=0.212 Sum_probs=73.2
Q ss_pred cccC--CCccccCCCCCcHHHHHHHHHhchhhccccHHHhHHHHHHhhHHHHHHHH-Hhhhhh----------cchhhHH
Q 017472 161 RVFG--QSKRFQPNKPSTKAQAAVALTSGRMAKAISNELSRLEAERSSRQAEMAEI-RSQLFD----------SGDIQRW 227 (371)
Q Consensus 161 ~~fG--~~~~F~P~kpVTRAEAAa~L~~g~~~~~i~~eL~rleae~~~~~~~~~~~-~~~~~~----------~~di~~~ 227 (371)
++-| ...+|--++.|||+|..-+|-+.-=+-.-+=.++. ..+++.++++.+. +-+|+. +..=+-.
T Consensus 100 RtVGlKKDeY~lD~k~Vtk~evvnLLESAGFSrsNPYyIV~--QGkI~~La~akD~eRL~LLkeVaGtrvYeerreeSlk 177 (1200)
T KOG0964|consen 100 RTVGLKKDEYFLDNKMVTKGEVVNLLESAGFSRSNPYYIVP--QGKINELANAKDSERLELLKEVAGTRVYEERREESLK 177 (1200)
T ss_pred EeecccchhhhcccccccHHHHHHHHHhcCcccCCCceEee--chhhHHhhcCCcHHHHHHHHHhcccchhHHhHHHHHH
Confidence 4556 34489999999999999998732111100101110 1122222222110 011110 0000001
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhh
Q 017472 228 WDKKFSEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAE 305 (371)
Q Consensus 228 w~~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e 305 (371)
-=++.+.=+++|.++=+-+++-+++||++|.+-++ +..|=|+|-++|-- +-.+=-.|+-..+++|--.++.-..+
T Consensus 178 im~ET~qK~ekI~ell~yieerLreLEeEKeeL~~-Yqkldk~rr~lEYt--iYdrEl~E~~~~l~~le~~r~~~~e~ 252 (1200)
T KOG0964|consen 178 IMEETKQKREKINELLKYIEERLRELEEEKEELEK-YQKLDKERRSLEYT--IYDRELNEINGELERLEEDRSSAPEE 252 (1200)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHhHhhhhhh--hhhhHHHHHHHHHHHHHHHHhccchh
Confidence 11222334688899999999999999999986554 67788888887642 12222244445555555555544444
No 65
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.79 E-value=1.2e+02 Score=31.39 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhh
Q 017472 254 EEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESE 298 (371)
Q Consensus 254 ~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~ 298 (371)
+.+|..++++...+.++++++..=.|.|..-..|++.|.++|-..
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq 261 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQ 261 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHH
Confidence 455666677777777777777777777777777777777766443
No 66
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.35 E-value=1.2e+02 Score=30.58 Aligned_cols=58 Identities=21% Similarity=0.381 Sum_probs=40.5
Q ss_pred hchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Q 017472 299 RATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEEVTR 363 (371)
Q Consensus 299 ~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le~~~~ 363 (371)
.|.|-.=|-+|-.-...++...-+|.+||+.|- +|=-.|+|+|.-|+.++- +|-|||.
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~------RMrEDWIEEECHRVEAQL-ALKEARk 124 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLA------RMREDWIEEECHRVEAQL-ALKEARK 124 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344444455555555566666677888888774 577799999999998874 5777765
No 67
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=37.27 E-value=2.5e+02 Score=25.70 Aligned_cols=52 Identities=6% Similarity=0.019 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHh
Q 017472 240 FEVEKLYIAARCDLEEELIV-QEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSG 293 (371)
Q Consensus 240 ~~~e~~~~~~~~~l~~~~~~-~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~ 293 (371)
.+.|+.+.+|+.+..+.+.+ |++-.++...+|++++..-- .-|.+|+.+|.-
T Consensus 65 a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~--~~~~~~~~~~~~ 117 (155)
T PRK06569 65 KYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLK--NSINQNIEDINL 117 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 44566777788888888887 88888888888888887543 345677777654
No 68
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.21 E-value=1.6e+02 Score=22.73 Aligned_cols=43 Identities=26% Similarity=0.217 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 017472 308 TLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQAR 354 (371)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~ 354 (371)
.|.+|.++++.=+..|.++.++. .+|+-.=.=+.+||.|+.+|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv----~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDV----NALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 46677776666555555554443 44443334567899888876
No 69
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.74 E-value=1.8e+02 Score=31.65 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 017472 306 KCTLQDTLSDLQTKLEGLLDTKSRSEAEKEAL 337 (371)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al 337 (371)
++.+++|.++++.+.+.+..++.+|+..++.+
T Consensus 218 ~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~ 249 (555)
T TIGR03545 218 KEEFDKLKKEGKADKQKIKSAKNDLQNDKKQL 249 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444445555555555555555555444443
No 70
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=36.64 E-value=7e+02 Score=28.54 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=87.6
Q ss_pred HHHhHHHHHHhhHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHH
Q 017472 195 NELSRLEAERSSRQAEMAEIRSQLFDSGDIQRWWDKKFSEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAM 274 (371)
Q Consensus 195 ~eL~rleae~~~~~~~~~~~~~~~~~~~di~~~w~~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~ 274 (371)
-+|.+=.+|-++-.+-+....++. .|...|.+ .=++-.-+.+..+.-...+++.++..-+.-...+=|-.+.+
T Consensus 294 ~eL~rk~~E~~~~qt~l~~~~~~~---~d~r~hi~----~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~ 366 (775)
T PF10174_consen 294 LELSRKKSELEALQTRLETLEEQD---SDMRQHIE----VLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQI 366 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555444444333222 23333332 12344456778888889999999998888888889999999
Q ss_pred HHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 017472 275 DCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRS 330 (371)
Q Consensus 275 ~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~l 330 (371)
+.=.+.++++..||.+|.+.+--...+|.-=+.+|++|...+..+-..+...+..|
T Consensus 367 ~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl 422 (775)
T PF10174_consen 367 EKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERL 422 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877777777666667777666655554444444333
No 71
>PRK02224 chromosome segregation protein; Provisional
Probab=36.42 E-value=6.6e+02 Score=28.18 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=24.2
Q ss_pred hhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHH
Q 017472 295 LESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRS 342 (371)
Q Consensus 295 l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~ 342 (371)
+...--++..+..+++. ..+++.+.+.+..-..+|+.+++.|.-.+.
T Consensus 577 ~~~~~~~l~~~~~~le~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 623 (880)
T PRK02224 577 LNSKLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAELND 623 (880)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555553 555555555555555555555555444443
No 72
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.92 E-value=2.1e+02 Score=27.18 Aligned_cols=12 Identities=0% Similarity=-0.263 Sum_probs=6.1
Q ss_pred HHHHhHHHHHHH
Q 017472 247 IAARCDLEEELI 258 (371)
Q Consensus 247 ~~~~~~l~~~~~ 258 (371)
..+..+|++++.
T Consensus 96 p~le~el~~l~~ 107 (206)
T PRK10884 96 PDLENQVKTLTD 107 (206)
T ss_pred HHHHHHHHHHHH
Confidence 344455555553
No 73
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.82 E-value=6.6e+02 Score=28.01 Aligned_cols=78 Identities=28% Similarity=0.330 Sum_probs=56.6
Q ss_pred HhHHHHHHHHHHHHhHHHHHHHHHHH---hhHHhhhhhhHHHHHHHHHHhhHHHHHHH---HhhhhhhhchhhhhhhhHH
Q 017472 237 ARGFEVEKLYIAARCDLEEELIVQEK---NYAEDLKEKAAMDCQRQLLLNLKDEVDEM---SGRLESERATYVAEKCTLQ 310 (371)
Q Consensus 237 ~~~~~~e~~~~~~~~~l~~~~~~~~~---~~~~~~k~~aa~~~~~~~l~~l~~ev~~~---~~~l~~~~~~~~~e~~~~~ 310 (371)
.+++++|.-+-..+++|.+.+.++|. ....+....+++|.|+- +||.|+.|- =+||.|+=.+.--|-=.||
T Consensus 107 ~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~---rlr~elKe~KfRE~RllseYSELEEENIsLQ 183 (772)
T KOG0999|consen 107 QKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRR---RLRDELKEYKFREARLLSEYSELEEENISLQ 183 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 57888998888889999877776653 34456666788888874 666666654 4678888888777777778
Q ss_pred HHHHHHH
Q 017472 311 DTLSDLQ 317 (371)
Q Consensus 311 ~l~~~~~ 317 (371)
|+-+-+-
T Consensus 184 KqVs~LR 190 (772)
T KOG0999|consen 184 KQVSNLR 190 (772)
T ss_pred HHHHHHh
Confidence 8755443
No 74
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=35.04 E-value=4.1e+02 Score=26.49 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=26.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 017472 321 EGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVL 358 (371)
Q Consensus 321 ~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~l 358 (371)
.....+-.++++..+-|+.-.-|.++|.+++.+....|
T Consensus 198 ~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~ 235 (264)
T PF07246_consen 198 EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRL 235 (264)
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777777777789999999887766554
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.59 E-value=5.6e+02 Score=26.84 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=9.9
Q ss_pred cccCCCCCcHHHHHHHHH
Q 017472 168 RFQPNKPSTKAQAAVALT 185 (371)
Q Consensus 168 ~F~P~kpVTRAEAAa~L~ 185 (371)
.|-|.++-.|.+.--=|.
T Consensus 143 ~f~~~~~~er~~il~~l~ 160 (562)
T PHA02562 143 PFMQLSAPARRKLVEDLL 160 (562)
T ss_pred hHhcCChHhHHHHHHHHh
Confidence 455666666655544444
No 76
>PF04624 Dec-1: Dec-1 repeat; InterPro: IPR006718 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This repeat is usually found in 12 copies in the central region of the protein. Its function is unknown. Length polymorphisms of Dec-1 have been observed in wild-type strains, and are caused by changes in the numbers of the first five repeats [].; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=33.35 E-value=40 Score=22.33 Aligned_cols=14 Identities=43% Similarity=0.855 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHH
Q 017472 341 RSWVEDEARKSQAR 354 (371)
Q Consensus 341 r~w~e~ea~~~~~~ 354 (371)
|-|.||.||--+++
T Consensus 9 RQwsEeqAk~qq~q 22 (27)
T PF04624_consen 9 RQWSEEQAKIQQAQ 22 (27)
T ss_pred HHhhHHHHHHHHHH
Confidence 99999999976654
No 77
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.74 E-value=4.7e+02 Score=28.57 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=40.6
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Q 017472 315 DLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEEVTR 363 (371)
Q Consensus 315 ~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le~~~~ 363 (371)
++..-.+++.++|.+.++.+.++.-++.=++..-...+.+.+.|+.|..
T Consensus 213 ~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~ 261 (555)
T TIGR03545 213 ELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQ 261 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccH
Confidence 4555566788899999999999999999999999988888888887753
No 78
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=31.65 E-value=3.4e+02 Score=23.46 Aligned_cols=74 Identities=12% Similarity=0.008 Sum_probs=43.3
Q ss_pred HHhhhhhhHHHHHHHHHHhh---HHHHHHHHhhhhhhhchhhhh---hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 017472 265 AEDLKEKAAMDCQRQLLLNL---KDEVDEMSGRLESERATYVAE---KCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALR 338 (371)
Q Consensus 265 ~~~~k~~aa~~~~~~~l~~l---~~ev~~~~~~l~~~~~~~~~e---~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~ 338 (371)
..|-+-+..++.+.+-|..| +.+....+.......+.+..= ..-|..|...|....+.|..++..++.-++.+.
T Consensus 23 ~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~~v~~~~~~ve~~r~~~~ 102 (147)
T PRK05689 23 LQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQQLTQWTQKVDNARKYWQ 102 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666 544444444433333433322 234777777888787888888877776555543
No 79
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=31.51 E-value=3.8e+02 Score=28.43 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhccc
Q 017472 308 TLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARK--SQARAKVLEEVTRRW 365 (371)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~--~~~~a~~le~~~~~w 365 (371)
++-.|..+.-..+++-..-+-+-.++||++.-.|.=++.|.++ .+||++..++++.|-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (429)
T PRK00247 321 RAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARR 380 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5555555555556666666667778999999999999999988 677777777776653
No 80
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=30.53 E-value=9.4e+02 Score=28.17 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHH-----------HHHHHHHHhhHHhhhhhhH
Q 017472 205 SSRQAEMAEIRSQLFDSGDIQRWWDKKFSEERARGFEVEKLYIAARCDLE-----------EELIVQEKNYAEDLKEKAA 273 (371)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~di~~~w~~~~~~e~~~~~~~e~~~~~~~~~l~-----------~~~~~~~~~~~~~~k~~aa 273 (371)
.+-.-++.|-+.++ .-|..-|-.|....++.=|+.++-+.+|- +-+..=+.++-.+-.++|+
T Consensus 262 q~sak~ieE~m~ql-------k~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkad 334 (1265)
T KOG0976|consen 262 QASAKEIEEKMRQL-------KAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKAD 334 (1265)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 017472 274 MDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSE 331 (371)
Q Consensus 274 ~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le 331 (371)
+.|..-.-..=-+=.|+.++.|--++......-..|+.+...++...|.++.++.+++
T Consensus 335 irc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerq 392 (1265)
T KOG0976|consen 335 IRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQ 392 (1265)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 81
>PRK15396 murein lipoprotein; Provisional
Probab=30.44 E-value=1.6e+02 Score=24.04 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 017472 308 TLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQAR 354 (371)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~ 354 (371)
.+++|+++++.=...+.+ |..+..+++..--=+.+||.|+..|
T Consensus 26 kvd~LssqV~~L~~kvdq----l~~dv~~~~~~~~~a~~eA~raN~R 68 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQ----LSNDVNAMRSDVQAAKDDAARANQR 68 (78)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665544333333 3444445555444588999999887
No 82
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=30.38 E-value=6.7e+02 Score=26.56 Aligned_cols=95 Identities=24% Similarity=0.266 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhHHHHH----------HHHHHHhhH--HhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhh
Q 017472 240 FEVEKLYIAARCDLEEE----------LIVQEKNYA--EDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKC 307 (371)
Q Consensus 240 ~~~e~~~~~~~~~l~~~----------~~~~~~~~~--~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~ 307 (371)
.-||.++...+...++. +.+-|..+. --.|||+.-|.+-.. .+|+-|-.-|-|...-+|+-.-.|++
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqare-aklqaec~rQ~qlaLEEKaaLrkerd 359 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQARE-AKLQAECARQTQLALEEKAALRKERD 359 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777766655421 111111111 224555555555443 37888888999988888888888887
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 017472 308 TLQDTLSDLQTKLEGLLDTKSRSEAEKEALR 338 (371)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~le~e~~al~ 338 (371)
.|. ++++.+..++.+++-.+.+--.||.
T Consensus 360 ~L~---keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 360 SLA---KELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 655 4667777778888888887777774
No 83
>PHA02940 hypothetical protein; Provisional
Probab=29.85 E-value=3.4e+02 Score=27.20 Aligned_cols=83 Identities=20% Similarity=0.318 Sum_probs=66.8
Q ss_pred HHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 017472 281 LLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEE 360 (371)
Q Consensus 281 l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le~ 360 (371)
|..|+..+-|-...|.--|.-|--=.=....|.++++-=+.+|.+.-+.--.=|+|+.+.-|=.++-=-.+++++++|--
T Consensus 9 lieL~eKI~eyIkDLedlk~dyd~~dfdaddLraeLeyI~kEi~~~~~~~ksVkeaielt~siL~~yy~~a~e~~k~Ls~ 88 (315)
T PHA02940 9 LIELKEKIGEYIKDLEDLKLDYDINDFDADDLRAELEYIQKEIVESYSITKSVKEAIELTYSILTDYYNDAKEKSKLLSD 88 (315)
T ss_pred hHHHHHHHHHHHHhHHHhhccCCCCcCchhhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55688888888888888787776555567788899888888888877777777888888888888888889999999987
Q ss_pred Hhc
Q 017472 361 VTR 363 (371)
Q Consensus 361 ~~~ 363 (371)
|-.
T Consensus 89 Ay~ 91 (315)
T PHA02940 89 AYN 91 (315)
T ss_pred HHh
Confidence 743
No 84
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=29.85 E-value=4.3e+02 Score=24.02 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=11.8
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHH
Q 017472 234 EERARGFEVEKLYIAARCDLEEELI 258 (371)
Q Consensus 234 ~e~~~~~~~e~~~~~~~~~l~~~~~ 258 (371)
.++.....+....+..+.|++.++.
T Consensus 70 ~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 70 SRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555554444
No 85
>PRK11637 AmiB activator; Provisional
Probab=29.81 E-value=6.4e+02 Score=26.00 Aligned_cols=39 Identities=5% Similarity=0.094 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhh
Q 017472 270 EKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCT 308 (371)
Q Consensus 270 ~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~ 308 (371)
.+..++.+++.|..-+.++..++..+...+.++..++..
T Consensus 178 ~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 178 TREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444
No 86
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=29.60 E-value=7.2e+02 Score=26.57 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHHHHHHHHhhHHhhhhhh
Q 017472 245 LYIAARCDLEEELIVQEKNYAEDLKEKA 272 (371)
Q Consensus 245 ~~~~~~~~l~~~~~~~~~~~~~~~k~~a 272 (371)
-+.....+|..++...++....-|+++.
T Consensus 259 ~i~~L~~~l~~l~~~~~~~l~~~L~~q~ 286 (582)
T PF09731_consen 259 RIDALQKELAELKEEEEEELERALEEQR 286 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555544
No 87
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.31 E-value=3.2e+02 Score=28.95 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHhhH
Q 017472 270 EKAAMDCQRQLLLNLK 285 (371)
Q Consensus 270 ~~aa~~~~~~~l~~l~ 285 (371)
++++++.+..+|..+.
T Consensus 93 ~~~~~~~~~~~l~~~~ 108 (525)
T TIGR02231 93 RGDALKALAKFLEDIR 108 (525)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666777777776665
No 88
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=29.26 E-value=7.5e+02 Score=26.66 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHH
Q 017472 274 MDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKS 351 (371)
Q Consensus 274 ~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~ 351 (371)
++...+.|.+...+++.+-+.|...+-++-.-+..++++..+...+.+.++.+..+ +|-.++-.=+++|+++-
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~-----eak~~l~~~~~~~~~~~ 164 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQE-----EAKEILLEEVEEEARHE 164 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333333333444444444444444444332 34445555556666543
No 89
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=28.81 E-value=5.3e+02 Score=29.64 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=47.8
Q ss_pred hHHHHHHHH-HHHHhHHHHHHHHHH----HHhHHHHHHHHHHHhhHHh---hhhhhH-----------------------
Q 017472 225 QRWWDKKFS-EERARGFEVEKLYIA----ARCDLEEELIVQEKNYAED---LKEKAA----------------------- 273 (371)
Q Consensus 225 ~~~w~~~~~-~e~~~~~~~e~~~~~----~~~~l~~~~~~~~~~~~~~---~k~~aa----------------------- 273 (371)
.++++-+|. .||....++|++-++ .|.+--++|.++||++..+ ||.+--
T Consensus 836 kr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~e 915 (1187)
T KOG0579|consen 836 KRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKE 915 (1187)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 345555553 366666777766543 4555568889999886542 333222
Q ss_pred ---HHH---HHHHHHhhHHHHHHHHhhhhhhhch
Q 017472 274 ---MDC---QRQLLLNLKDEVDEMSGRLESERAT 301 (371)
Q Consensus 274 ---~~~---~~~~l~~l~~ev~~~~~~l~~~~~~ 301 (371)
+++ ++..+.+++.++|.||++++..--+
T Consensus 916 q~~~~~ql~ekdFv~kqqq~le~~lkrm~~~~k~ 949 (1187)
T KOG0579|consen 916 QIEIEHQLKEKDFVMKQQQNLEAMLKRMAEKHKE 949 (1187)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2466788899999999998875433
No 90
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=28.51 E-value=6.2e+02 Score=25.41 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhHHhhhhhhHHHHHH
Q 017472 253 LEEELIVQEKNYAEDLKEKAAMDCQR 278 (371)
Q Consensus 253 l~~~~~~~~~~~~~~~k~~aa~~~~~ 278 (371)
|+++..+-.+++..+-++++.++.|.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el 80 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQEL 80 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 91
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=28.48 E-value=3.9e+02 Score=23.16 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhh
Q 017472 229 DKKFSEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESER 299 (371)
Q Consensus 229 ~~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~ 299 (371)
+..+..++......+...+..+..+-+-+.++.. .+-||||...+...+....=..++||+....-..+
T Consensus 77 ~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~k~--~ekLker~~~~~~~~e~r~EQk~~DE~a~~~~~r~ 145 (146)
T PRK07720 77 ERTIDHYQLLVMQAREQMNRKQQDLTEKNIEVKK--YEKMKEKKQEMFALEEKAAEMKEMDEISIQQFARQ 145 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 92
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.23 E-value=3.7e+02 Score=27.03 Aligned_cols=59 Identities=14% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 017472 273 AMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSE 331 (371)
Q Consensus 273 a~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le 331 (371)
.+..++..|..-..|++++++.+..++-++..++...++....++.+...+...+-+.+
T Consensus 23 ~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~ 81 (344)
T PF12777_consen 23 ELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAE 81 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666555555544554555555555555555555444433
No 93
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=28.21 E-value=9.3e+02 Score=27.41 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=57.3
Q ss_pred HHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhh
Q 017472 249 ARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKS 328 (371)
Q Consensus 249 ~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~ 328 (371)
...||++....+..++..|.. +-...|..|++.+.+.=.+|-+--....-|...|...+.+.+.=.+.++..+-
T Consensus 138 ~q~ELee~q~~Hqeql~~Lt~------aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~ 211 (739)
T PF07111_consen 138 SQRELEEAQRLHQEQLSSLTQ------AHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQE 211 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345666666666666655543 33456778887777666655555555555666666666666666666777777
Q ss_pred hHHHHHHHHHHHHHhHH
Q 017472 329 RSEAEKEALRILRSWVE 345 (371)
Q Consensus 329 ~le~e~~al~~~r~w~e 345 (371)
+||+.--=+.-+|..|=
T Consensus 212 ~le~q~tlv~~LR~YvG 228 (739)
T PF07111_consen 212 ELEAQVTLVEQLRKYVG 228 (739)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77776666666676663
No 94
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=28.13 E-value=4.3e+02 Score=30.14 Aligned_cols=86 Identities=24% Similarity=0.272 Sum_probs=52.4
Q ss_pred HHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH---
Q 017472 265 AEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILR--- 341 (371)
Q Consensus 265 ~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r--- 341 (371)
..|--|||+++.+-.-+-.=|.-||.|.+ .-...-+.-+++|+...+.+-.+--+.|-|+.|--|+-
T Consensus 392 ~al~~era~l~a~w~rv~egrr~v~~mv~----------~grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l 461 (828)
T PF04094_consen 392 QALAAERAALDAEWARVDEGRRAVDAMVE----------VGRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVL 461 (828)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777776555445555555543 12223333456666666666666666777766655543
Q ss_pred ------------HhHHHHHHHHHHHHHHHHH
Q 017472 342 ------------SWVEDEARKSQARAKVLEE 360 (371)
Q Consensus 342 ------------~w~e~ea~~~~~~a~~le~ 360 (371)
+|++|=+||...---||.-
T Consensus 462 ~ea~~~irlqy~~~~~~l~k~~~~a~gvlda 492 (828)
T PF04094_consen 462 DEALGDIRLQYEAHAEDLAKRVDDARGVLDA 492 (828)
T ss_pred HhhccccccccchHHHHHHHHHHhhhhhhhh
Confidence 8999999888775555544
No 95
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=27.18 E-value=7.7e+02 Score=26.13 Aligned_cols=49 Identities=22% Similarity=0.076 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHH
Q 017472 239 GFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDE 287 (371)
Q Consensus 239 ~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~e 287 (371)
.++-||.-.||.....+++++..+.-.-.|-|+||+..|+..|.+-=+|
T Consensus 319 qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLee 367 (442)
T PF06637_consen 319 QEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEE 367 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777888888887788888999998888877654333
No 96
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=26.38 E-value=1.9e+02 Score=31.14 Aligned_cols=58 Identities=26% Similarity=0.425 Sum_probs=39.7
Q ss_pred HHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhH---HHHHHHHHH
Q 017472 279 QLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRS---EAEKEALRI 339 (371)
Q Consensus 279 ~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~l---e~e~~al~~ 339 (371)
|+|..+-.++.+-.+.|.-+|-.|+-||.-++|.+..+ |+.+.++|-.| ..||+.|.|
T Consensus 358 qvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnL---qe~la~tqk~LqEsr~eKetLql 418 (527)
T PF15066_consen 358 QVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNL---QEALANTQKHLQESRNEKETLQL 418 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHH
Confidence 56666666666666778889999999998887765444 44555555444 467777765
No 97
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.28 E-value=2.9e+02 Score=28.67 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=9.4
Q ss_pred CCcHHHHHHHHHHHh
Q 017472 13 LCTRREYARWLVRIN 27 (371)
Q Consensus 13 ~ITRaEFA~~Lvra~ 27 (371)
-.||.+-...|+...
T Consensus 19 ~~~~~~~l~lls~~~ 33 (365)
T KOG2391|consen 19 DLTRQDLLNLLSSFK 33 (365)
T ss_pred hhHHHHHHHHHHhcc
Confidence 456777777666544
No 98
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=25.62 E-value=3.3e+02 Score=22.93 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=19.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHH------------HhHHHHHHH
Q 017472 321 EGLLDTKSRSEAEKEALRILR------------SWVEDEARK 350 (371)
Q Consensus 321 ~~~~~~~~~le~e~~al~~~r------------~w~e~ea~~ 350 (371)
+.+..++..+..+|.=.++++ .|++|++=+
T Consensus 58 ~~l~~~~~~lk~~r~~~~v~k~v~q~lI~gSgVdWa~D~~L~ 99 (106)
T PF05837_consen 58 EKLEKLEKELKKSRQRWRVMKNVFQALIVGSGVDWAEDPKLR 99 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCHHHH
Confidence 345556666666666666665 799998754
No 99
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.99 E-value=7.4e+02 Score=25.14 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhh----hhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 017472 272 AAMDCQRQLLLNLKDEVDEMSGR----LESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEAL 337 (371)
Q Consensus 272 aa~~~~~~~l~~l~~ev~~~~~~----l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al 337 (371)
++|..|++-|+...+.++-.-|+ |...-..|.+=...|....+.++.-.+++.++|++||-=..+.
T Consensus 63 s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 63 SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555544444443333 3344555666566677777778888888888888888554444
No 100
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=24.85 E-value=82 Score=25.58 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHhcc
Q 017472 332 AEKEALRILRSWVEDEA---RKSQARAKVLEEVTRR 364 (371)
Q Consensus 332 ~e~~al~~~r~w~e~ea---~~~~~~a~~le~~~~~ 364 (371)
.-..++.||+.|.+.+. .....-.++|..++++
T Consensus 41 l~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~ 76 (86)
T cd08779 41 LDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQ 76 (86)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHH
Confidence 35678999999999872 3456677777777653
No 101
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.38 E-value=3.6e+02 Score=30.07 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=44.6
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHH
Q 017472 236 RARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSD 315 (371)
Q Consensus 236 ~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~ 315 (371)
+....+.-+....+..||-++...|.+ |.+|+++. ...++.|...
T Consensus 78 ~r~~~e~~RI~~sVs~EL~ele~krqe---------------------l~seI~~~--------------n~kiEelk~~ 122 (907)
T KOG2264|consen 78 GRILREQKRILASVSLELTELEVKRQE---------------------LNSEIEEI--------------NTKIEELKRL 122 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHhHHHHH--------------HHHHHHHHHH
Confidence 455667777777777777666655443 33444433 2356777788
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHH
Q 017472 316 LQTKLEGLLDTKSRSEAEKEALRIL 340 (371)
Q Consensus 316 ~~~~~~~~~~~~~~le~e~~al~~~ 340 (371)
+.+++++++++|-+.|.-.-++.-|
T Consensus 123 i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 123 IPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 8888888888888777655444433
No 102
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=24.08 E-value=3.8e+02 Score=24.85 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=12.1
Q ss_pred HHHHHhhHHHHHHHHhhhhhh
Q 017472 278 RQLLLNLKDEVDEMSGRLESE 298 (371)
Q Consensus 278 ~~~l~~l~~ev~~~~~~l~~~ 298 (371)
-|+|.| |.|+|||.++|-+-
T Consensus 118 Yqll~h-r~e~ee~~~~l~~l 137 (175)
T PRK13182 118 YQLLQH-RREMEEMLERLQKL 137 (175)
T ss_pred HHHHHh-HHHHHHHHHHHHHH
Confidence 344443 77788777766543
No 103
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=24.02 E-value=1.1e+03 Score=26.79 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=11.4
Q ss_pred hHHHHHHHH--cCCccCCcCC
Q 017472 62 IESIQALAE--AGVIPSQLLG 80 (371)
Q Consensus 62 ~~~Iqalae--aGIIsG~lsg 80 (371)
+....++.+ -|||.|--+|
T Consensus 6 sdalaAaleqmdgiiassktg 26 (861)
T KOG1899|consen 6 SDALAAALEQMDGIIASSKTG 26 (861)
T ss_pred HHHHHHHHHHhhcchhccccc
Confidence 345555554 5888875443
No 104
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.96 E-value=2.9e+02 Score=20.14 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=26.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHH
Q 017472 242 VEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLL 282 (371)
Q Consensus 242 ~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~ 282 (371)
+|+-|...+...+.++.+ +..|.+|...+-.|.+.|.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~----~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAE----YDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 577888888888888874 4557777776666655543
No 105
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=23.53 E-value=7.1e+02 Score=24.41 Aligned_cols=16 Identities=13% Similarity=-0.128 Sum_probs=8.0
Q ss_pred CCCcHHHHHHHHHHHh
Q 017472 12 ELCTRREYARWLVRIN 27 (371)
Q Consensus 12 ~~ITRaEFA~~Lvra~ 27 (371)
.+||=..|+.++-.-.
T Consensus 3 ~~vtG~~L~~L~~~Yv 18 (297)
T PF02841_consen 3 ITVTGPMLAELVKSYV 18 (297)
T ss_dssp EB-BHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 4556666665554433
No 106
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=23.40 E-value=3.7e+02 Score=28.24 Aligned_cols=51 Identities=25% Similarity=0.199 Sum_probs=31.7
Q ss_pred HHHHhhhhhcchhhHHHHHHHHHHHHhHH----HHHHHHHHHHhHHHHHHHHHHH
Q 017472 212 AEIRSQLFDSGDIQRWWDKKFSEERARGF----EVEKLYIAARCDLEEELIVQEK 262 (371)
Q Consensus 212 ~~~~~~~~~~~di~~~w~~~~~~e~~~~~----~~e~~~~~~~~~l~~~~~~~~~ 262 (371)
++|+-.+.+.+---.--.+++-.||+||. .|||++++-.-|.+-+|++++.
T Consensus 209 ~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~r 263 (561)
T KOG1103|consen 209 EEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELER 263 (561)
T ss_pred HHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56665554322212334677888999876 4677777777777766665543
No 107
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=23.13 E-value=9.4e+02 Score=25.71 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=34.2
Q ss_pred HHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHH--HHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhh
Q 017472 246 YIAARCDLEEELIVQEKNYAEDLKEKAAMDCQR--QLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGL 323 (371)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~--~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~ 323 (371)
.++...+|...+++.+++....++++-.-|... .-|..|...|.++- .....+.++..+..+++.|..-+..=...+
T Consensus 343 ~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le-~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l 421 (582)
T PF09731_consen 343 EEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALE-EALDARSEAEDENRRAQQLWLAVDALKSAL 421 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555554455554443333321 22344444444432 233344555555555555544444433333
No 108
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=23.03 E-value=3.3e+02 Score=23.10 Aligned_cols=28 Identities=32% Similarity=0.297 Sum_probs=18.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 017472 231 KFSEERARGFEVEKLYIAARCDLEEELI 258 (371)
Q Consensus 231 ~~~~e~~~~~~~e~~~~~~~~~l~~~~~ 258 (371)
+|..|+.+...+|+--...-.||+.+-+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTa 29 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTA 29 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666554
No 109
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=22.92 E-value=3.6e+02 Score=29.77 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH-HHhH
Q 017472 306 KCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRIL-RSWV 344 (371)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~-r~w~ 344 (371)
..+|.||..-++...+.+..|+...|.=|.-|..- |.+-
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk 432 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLK 432 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 36677777777777777777777777666665543 5554
No 110
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.77 E-value=6.7e+02 Score=23.88 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhh-------hchhhhh--hhhHHHHHHHHHHh
Q 017472 261 EKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESE-------RATYVAE--KCTLQDTLSDLQTK 319 (371)
Q Consensus 261 ~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~-------~~~~~~e--~~~~~~l~~~~~~~ 319 (371)
++.....-++.+.++.+.+-+...+.++.-++.+.... -+=+..+ ..||++|...+.+-
T Consensus 76 ~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~ 143 (251)
T PF11932_consen 76 ERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQERLARLRAMLDDA 143 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhcc
Confidence 33444555666667777777777777766544333221 2222222 45666666655443
No 111
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.75 E-value=8.2e+02 Score=29.08 Aligned_cols=19 Identities=16% Similarity=0.538 Sum_probs=16.2
Q ss_pred CccCCCCCCCcHHHHHHHH
Q 017472 93 GIYFFPERFISRYDLINWK 111 (371)
Q Consensus 93 ~~~F~Pd~pITRqEma~~k 111 (371)
+.||--+..|||.|++.++
T Consensus 107 DeY~lD~k~Vtk~evvnLL 125 (1200)
T KOG0964|consen 107 DEYFLDNKMVTKGEVVNLL 125 (1200)
T ss_pred hhhhcccccccHHHHHHHH
Confidence 4689999999999999754
No 112
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.73 E-value=4.4e+02 Score=21.72 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Q 017472 308 TLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQARAKVLEEVT 362 (371)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a~~le~~~ 362 (371)
-|.+|.+.+..+.+..... .+++.|...|.--|+=...|=-++..|+.-||.+.
T Consensus 16 aid~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~ 69 (89)
T PF13747_consen 16 AIDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEAN 69 (89)
T ss_pred HHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 4566666677666644433 78888888888888888888888888888887764
No 113
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=22.63 E-value=2.4e+02 Score=28.15 Aligned_cols=53 Identities=26% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHH
Q 017472 239 GFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEM 291 (371)
Q Consensus 239 ~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~ 291 (371)
.+++.|+-.+.-.-|--.+..+++-...|-+|+-=++-+.|++..|..-..+.
T Consensus 91 keelqkl~~eLe~vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~el 143 (268)
T PF11802_consen 91 KEELQKLISELEMVLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEEL 143 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444333333335566666666677777777777777777666555543
No 114
>PF14992 TMCO5: TMCO5 family
Probab=22.61 E-value=4.5e+02 Score=26.42 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=44.0
Q ss_pred HHHhhHHhhhhhhHHHHHHHHH----HhhHHHHHHHHhhhhhhhc----hhhhhhhhHHHHHHHHHHhhhhhhhhhh
Q 017472 260 QEKNYAEDLKEKAAMDCQRQLL----LNLKDEVDEMSGRLESERA----TYVAEKCTLQDTLSDLQTKLEGLLDTKS 328 (371)
Q Consensus 260 ~~~~~~~~~k~~aa~~~~~~~l----~~l~~ev~~~~~~l~~~~~----~~~~e~~~~~~l~~~~~~~~~~~~~~~~ 328 (371)
++..+-.|-.+.+-+|-+++.| ..|.++++++...+-.++- ..-+=+.++|+++..+......+..+.+
T Consensus 61 ~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 61 RETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred hHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444556677788888888 8889999988877533322 1112236777777777766666665543
No 115
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.10 E-value=3.4e+02 Score=23.44 Aligned_cols=28 Identities=29% Similarity=0.608 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHhhhhh
Q 017472 270 EKAAMDCQRQLLLNLKDEVDEMSGRLES 297 (371)
Q Consensus 270 ~~aa~~~~~~~l~~l~~ev~~~~~~l~~ 297 (371)
.|--.|.|+|+|.+-|.+.+...+++..
T Consensus 57 sREEFdvq~qvl~rtR~kl~~Leari~~ 84 (103)
T COG2960 57 SREEFDVQRQVLLRTREKLAALEARIEE 84 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999998888754
No 116
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=21.85 E-value=5e+02 Score=22.05 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHH------HHHhhhhhhhchhhhhhhhHHHH
Q 017472 239 GFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVD------EMSGRLESERATYVAEKCTLQDT 312 (371)
Q Consensus 239 ~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~------~~~~~l~~~~~~~~~e~~~~~~l 312 (371)
...=.+.+..+..|||++|.--- .|-+--|-...+|+.|=- -|++|++-+|..| +.+-|+.|
T Consensus 8 v~~er~~~~~L~~ELEeER~AaA----------sAA~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EEk~~y--D~e~ie~L 75 (94)
T PF04576_consen 8 VEAERKALAALYAELEEERSAAA----------SAASEAMAMILRLQEEKAAVEMEARQYQRMAEEKAEY--DQEAIESL 75 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh--HHHHHHHH
Confidence 34444566667777777775211 122233444445544432 4788888888765 45566666
Q ss_pred HHHHHHhhhhhhhhhhhH
Q 017472 313 LSDLQTKLEGLLDTKSRS 330 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l 330 (371)
..-+-.+...+..+..+|
T Consensus 76 ~~~l~~rE~e~~~Le~el 93 (94)
T PF04576_consen 76 KDILYKREKEIQSLEAEL 93 (94)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 666666555555555544
No 117
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=21.82 E-value=5.9e+02 Score=22.90 Aligned_cols=92 Identities=17% Similarity=0.119 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHH
Q 017472 238 RGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQ 317 (371)
Q Consensus 238 ~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~ 317 (371)
+++.+|+-++.+-.+++..-.+-|.-.++. ..++.+.+++..=+.....-|..|.++|-.+.-+=+..+.--++++
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~ei----e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEI----ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444444333333222222 2344455555444444555555555666555555444444455555
Q ss_pred HhhhhhhhhhhhHHHH
Q 017472 318 TKLEGLLDTKSRSEAE 333 (371)
Q Consensus 318 ~~~~~~~~~~~~le~e 333 (371)
..+....++=..+|.|
T Consensus 101 ~~~~~~~~~l~~~E~e 116 (140)
T PF10473_consen 101 SLNSSLENLLQEKEQE 116 (140)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 5555555555566665
No 118
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.81 E-value=6.8e+02 Score=27.00 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhHHHHH
Q 017472 274 MDCQRQLLLNLKDEVD 289 (371)
Q Consensus 274 ~~~~~~~l~~l~~ev~ 289 (371)
++.+++-+..+..|++
T Consensus 349 len~k~~~e~~~~e~~ 364 (493)
T KOG0804|consen 349 LENQKQYYELLITEAD 364 (493)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 3333333333333333
No 119
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=21.77 E-value=1.1e+03 Score=25.97 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhHHHH
Q 017472 228 WDKKFSEERARGFEVEKLYIAARCDLEE 255 (371)
Q Consensus 228 w~~~~~~e~~~~~~~e~~~~~~~~~l~~ 255 (371)
....|...++.-+.++.-.+++....+.
T Consensus 176 l~~eL~~~~ee~e~L~~~~kel~~~~e~ 203 (546)
T PF07888_consen 176 LEAELEQEEEEMEQLKQQQKELTESSEE 203 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444333
No 120
>PRK04863 mukB cell division protein MukB; Provisional
Probab=21.56 E-value=1.6e+03 Score=27.78 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHH
Q 017472 306 KCTLQDTLSDLQTKLEGLLDTKSRSE 331 (371)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~le 331 (371)
++.+.++..+++.-.+.+..++..+.
T Consensus 375 eeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 375 DEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 121
>COG5462 Predicted secreted (periplasmic) protein [Function unknown]
Probab=21.40 E-value=1.7e+02 Score=26.38 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHH
Q 017472 274 MDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSD 315 (371)
Q Consensus 274 ~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~ 315 (371)
|-.---++...|+|++.++.-+.+-..+|-.|+++|.=|..|
T Consensus 13 mv~Aa~vtysIK~~ae~~l~~vrkl~~qI~sE~dtIdlLkAd 54 (138)
T COG5462 13 MVAAATVTYSIKHEAETQLAEVRKLHAQIKSEEDTIDLLKAD 54 (138)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHh
Confidence 344455789999999999999999999999999999888765
No 122
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.23 E-value=7.9e+02 Score=24.10 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=9.3
Q ss_pred cccHHHhHHHHHHhhHHHHH
Q 017472 192 AISNELSRLEAERSSRQAEM 211 (371)
Q Consensus 192 ~i~~eL~rleae~~~~~~~~ 211 (371)
.+..+|..+++|..+-....
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~ 47 (239)
T COG1579 28 EIRKALKKAKAELEALNKAL 47 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444333
No 123
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=21.20 E-value=7.7e+02 Score=23.98 Aligned_cols=66 Identities=23% Similarity=0.290 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 017472 272 AAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRIL 340 (371)
Q Consensus 272 aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~ 340 (371)
+.++.....|-.++.+.+.....|..... .++..++..+.....+.+....-..-+=.+-+||.-+
T Consensus 189 ~~~~~~~~~l~~l~~~~~~~~~~l~~~~~---~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~L 254 (301)
T PF14362_consen 189 AQLDAAQAELDTLQAQIDAAIAALDAQIA---ARKARLDEARQAKVAEFQAIISANDGFLARLEALWEL 254 (301)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHHH
Confidence 33344444444444444444444332211 4445555555544444444444444444455555444
No 124
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.17 E-value=4e+02 Score=20.72 Aligned_cols=56 Identities=25% Similarity=0.240 Sum_probs=36.9
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 017472 199 RLEAERSSRQAEMAEIRSQLFDSGDIQRWWDKKFSEERARGFEVEKLYIAARCDLEEELI 258 (371)
Q Consensus 199 rleae~~~~~~~~~~~~~~~~~~~di~~~w~~~~~~e~~~~~~~e~~~~~~~~~l~~~~~ 258 (371)
-|++|=-|.+++-.|++. ...-+-.+..+|..--.+.-+++.-....+.+++++|.
T Consensus 5 aL~~EirakQ~~~eEL~k----vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTK----VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 478888888888776652 33445667777777666666666666666666666554
No 125
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=21.17 E-value=1.1e+03 Score=25.94 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=9.5
Q ss_pred hhhhhhhHHHHHHHHHHhh
Q 017472 302 YVAEKCTLQDTLSDLQTKL 320 (371)
Q Consensus 302 ~~~e~~~~~~l~~~~~~~~ 320 (371)
|-.-.+++.+|..+-+...
T Consensus 403 v~~s~~rl~~L~~qWe~~R 421 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHR 421 (594)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555443
No 126
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=20.84 E-value=6.8e+02 Score=23.23 Aligned_cols=54 Identities=17% Similarity=0.291 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhh
Q 017472 272 AAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLD 325 (371)
Q Consensus 272 aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~ 325 (371)
..++.+.+.|.+-..+++..-+.|...+-.+-.-+..++.+..+...+.+.|+.
T Consensus 92 ~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iAg 145 (201)
T PF12072_consen 92 EQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIAG 145 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444444444444444444444444444444444443
No 127
>COG1318 Predicted transcriptional regulators [Transcription]
Probab=20.62 E-value=7.3e+02 Score=23.48 Aligned_cols=31 Identities=19% Similarity=-0.105 Sum_probs=17.1
Q ss_pred HHhHHHHHHHHHHHhhHHhhhhhhHHHHHHH
Q 017472 249 ARCDLEEELIVQEKNYAEDLKEKAAMDCQRQ 279 (371)
Q Consensus 249 ~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~ 279 (371)
+..++.+++.+-..-+-.+++++..++-=+.
T Consensus 124 a~~~l~ki~~~~~~~~ke~~e~k~K~~~~k~ 154 (182)
T COG1318 124 AVEVLKKIKGEHFPMDKELLEEKLKGEVIKG 154 (182)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHhh
Confidence 4455556666555555566666665554333
No 128
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=20.26 E-value=1.2e+03 Score=26.09 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=34.6
Q ss_pred HHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHH
Q 017472 260 QEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQ 317 (371)
Q Consensus 260 ~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~ 317 (371)
..+++..|-.+.+.+..+...=.+...|+..+-.+....+.+++.++.+++.|..++.
T Consensus 448 ~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 448 LKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555666666666666667777777777766655543
Done!