Query 017472
Match_columns 371
No_of_seqs 159 out of 346
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:59:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pyw_A S-layer protein SAP; SL 100.0 4.8E-28 1.7E-32 220.5 13.3 142 5-187 32-174 (203)
2 4aq1_A SBSB protein; structura 99.8 1.3E-22 4.4E-27 215.8 0.0 141 5-190 29-170 (892)
3 3pyw_A S-layer protein SAP; SL 99.8 1.4E-20 4.8E-25 171.3 11.8 112 50-189 3-114 (203)
4 4aq1_A SBSB protein; structura 99.6 1.4E-16 4.8E-21 169.8 0.0 127 50-229 2-129 (892)
5 3oja_B Anopheles plasmodium-re 77.8 14 0.00048 37.2 11.0 15 241-255 474-488 (597)
6 2no2_A HIP-I, huntingtin-inter 77.4 29 0.00098 28.5 12.9 88 230-338 15-102 (107)
7 2dfs_A Myosin-5A; myosin-V, in 76.8 29 0.00099 38.9 14.0 31 307-337 1012-1042(1080)
8 2fxo_A Myosin heavy chain, car 76.3 33 0.0011 28.7 14.4 73 256-335 35-107 (129)
9 3na7_A HP0958; flagellar bioge 73.7 55 0.0019 30.0 18.4 56 283-338 108-163 (256)
10 3ghg_A Fibrinogen alpha chain; 70.5 23 0.00078 36.9 10.3 39 283-321 121-159 (562)
11 1i84_S Smooth muscle myosin he 68.8 20 0.0007 40.1 10.5 11 15-25 550-560 (1184)
12 3vkg_A Dynein heavy chain, cyt 68.8 1E+02 0.0035 38.7 17.0 60 276-335 2025-2087(3245)
13 3vkg_A Dynein heavy chain, cyt 64.7 1.3E+02 0.0045 37.7 16.9 28 50-77 1708-1736(3245)
14 2dfs_A Myosin-5A; myosin-V, in 62.3 1.3E+02 0.0043 33.7 15.1 53 279-331 970-1022(1080)
15 1x79_B RAB GTPase binding effe 55.5 66 0.0023 26.8 8.7 34 278-311 65-98 (112)
16 4fla_A Regulation of nuclear P 53.0 1.1E+02 0.0039 26.4 11.0 72 168-255 15-86 (152)
17 1jcd_A Major outer membrane li 52.7 43 0.0015 24.3 6.2 44 308-355 5-48 (52)
18 2ocy_A RAB guanine nucleotide 48.4 1.4E+02 0.0048 26.1 10.7 90 229-340 5-94 (154)
19 3q8t_A Beclin-1; autophagy, AT 47.3 1.1E+02 0.0037 24.5 9.9 70 247-323 10-79 (96)
20 3hnw_A Uncharacterized protein 46.8 81 0.0028 26.9 8.2 29 229-257 67-95 (138)
21 2i1j_A Moesin; FERM, coiled-co 46.6 15 0.00052 38.1 4.3 55 269-323 370-424 (575)
22 1t6f_A Geminin; coiled-coil, c 42.6 17 0.00058 24.7 2.5 22 310-331 10-31 (37)
23 1f5n_A Interferon-induced guan 34.0 3.2E+02 0.011 28.4 11.9 9 101-109 287-295 (592)
24 3swk_A Vimentin; cytoskeleton, 33.1 1.1E+02 0.0037 24.0 6.3 47 291-337 8-54 (86)
25 2p22_A Suppressor protein STP2 33.1 2.6E+02 0.0087 24.8 9.5 65 276-340 9-78 (174)
26 3bas_A Myosin heavy chain, str 31.8 1.8E+02 0.0062 22.6 8.8 23 313-335 58-80 (89)
27 2no2_A HIP-I, huntingtin-inter 31.3 2.1E+02 0.0073 23.2 8.4 27 305-331 52-78 (107)
28 3c3g_A Alpha/beta peptide with 29.0 70 0.0024 21.2 3.7 25 314-338 3-27 (33)
29 3qh9_A Liprin-beta-2; coiled-c 28.7 1.4E+02 0.0049 23.5 6.2 52 278-330 25-77 (81)
30 2wq1_A General control protein 28.6 72 0.0025 21.2 3.7 25 314-338 3-27 (33)
31 2xnx_M M protein, M1-BC1; cell 27.4 2.4E+02 0.0083 24.5 8.0 23 316-338 99-121 (146)
32 3c3f_A Alpha/beta peptide with 27.1 79 0.0027 21.1 3.7 25 314-338 4-28 (34)
33 2hy6_A General control protein 23.1 1E+02 0.0035 20.5 3.7 25 314-338 4-28 (34)
34 3lay_A Zinc resistance-associa 22.6 3.1E+02 0.011 24.1 8.1 20 304-323 110-129 (175)
35 3mov_A Lamin-B1; LMNB1, B-type 22.4 2.9E+02 0.01 21.9 8.2 73 260-338 10-85 (95)
36 3q8t_A Beclin-1; autophagy, AT 22.0 3E+02 0.01 21.8 11.1 33 282-314 63-95 (96)
37 1t3j_A Mitofusin 1; coiled coi 20.7 2.1E+02 0.0073 23.1 6.0 52 280-331 37-88 (96)
No 1
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=99.95 E-value=4.8e-28 Score=220.52 Aligned_cols=142 Identities=21% Similarity=0.252 Sum_probs=114.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhcccccCCcccccccccCCCCCCCCCcCCCCCCCChHHHHHHHHcCCccCCcCCCCCC
Q 017472 5 EEDVNADELCTRREYARWLVRINSLLERNPKLRIVPCKSLSGTVVAAFNDVDVEDPDIESIQALAEAGVIPSQLLGKHYG 84 (371)
Q Consensus 5 e~~F~Pn~~ITRaEFA~~Lvra~~~l~r~~~~~i~Pa~~~~~~~~~aF~DV~~~hp~~~~IqalaeaGIIsG~lsg~~~~ 84 (371)
+++|+|+++|||+||+.||+++++. . + .....+.|+||+ +||++++|+.+++.|||+|+
T Consensus 32 dg~F~P~~~iTR~e~a~~l~r~~~~-~--------~----~~~~~~~F~Dv~-~~w~~~~i~~a~~~Gii~g~------- 90 (203)
T 3pyw_A 32 KGMFEPGKELTRAEAATMMAQILNL-P--------I----DKDAKPSFADSQ-GQWYTPFIAAVEKAGVIKGT------- 90 (203)
T ss_dssp TSCCCTTCBCBHHHHHHHHHHHTTC-C--------C----CTTCCCSCGGGC-SSTTHHHHHHHHHTTSSCCC-------
T ss_pred CCeECCCCCchHHHHHHHHHHHhCC-C--------C----CcCCCCCCCCCC-cHHHHHHHHHHHHCcCeecC-------
Confidence 4689999999999999999999851 1 1 123457899996 89999999999999999986
Q ss_pred CCCCCCCCCccCCCCCCCcHHHHHHHHHhh-hccCCChhhhhhhccCCCccccccccHHHHHHHHHhHhhhhcccccccc
Q 017472 85 SDGSKGQGGIYFFPERFISRYDLINWKAQV-DYEVKPDIVEQISRTKMSYMDVREINSEASLGLFMDMLAGEKSIARRVF 163 (371)
Q Consensus 85 ~~~~d~~~~~~F~Pd~pITRqEma~~kv~L-~~~~lp~~~~~~~~~~~~F~Dv~~I~~~a~~av~a~l~aG~~~II~~~f 163 (371)
+++ |+|+.+|||+||+.|++.+ .... ... ......|.|++.| +|+..+|.... ..||+.
T Consensus 91 -------~~~-F~P~~~iTR~e~a~~l~r~~~~~~--~~~---~~~~~~f~D~~~i-~wa~~~v~~~~---~~Gi~~--- 150 (203)
T 3pyw_A 91 -------GNG-FEPNGKIDRVSMASLLVEAYKLDT--KVN---GTPATKFKDLETL-NWGKEKANILV---ELGISV--- 150 (203)
T ss_dssp -------SSC-CCTTSBCBHHHHHHHHHHHHTGGG--GSS---SCCCCCCHHHHTC-SSSHHHHHHHH---HTTCSC---
T ss_pred -------CCC-CCCCCcccHHHHHHHHHHHhcccc--ccc---cccCCCCCCCCcc-HHHHHHHHHHH---HCcCEe---
Confidence 347 9999999999999987733 3221 000 0124689999999 78999987764 467877
Q ss_pred CCCccccCCCCCcHHHHHHHHHhc
Q 017472 164 GQSKRFQPNKPSTKAQAAVALTSG 187 (371)
Q Consensus 164 G~~~~F~P~kpVTRAEAAa~L~~g 187 (371)
|++++|+|++++||+|+|++|++.
T Consensus 151 g~~~~f~P~~~iTRaE~A~~l~r~ 174 (203)
T 3pyw_A 151 GTGDQWEPKKTVTKAEAAQFIAKT 174 (203)
T ss_dssp CCSSCCCTTSBCBHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCcHHHHHHHHHHH
Confidence 877899999999999999999965
No 2
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=99.84 E-value=1.3e-22 Score=215.76 Aligned_cols=141 Identities=20% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHhcccccCCcccccccccCCCCCCCCCcCCCCCCCChHHHHHHHHcCCccCCcCCCCCC
Q 017472 5 EEDVNADELCTRREYARWLVRINSLLERNPKLRIVPCKSLSGTVVAAFNDVDVEDPDIESIQALAEAGVIPSQLLGKHYG 84 (371)
Q Consensus 5 e~~F~Pn~~ITRaEFA~~Lvra~~~l~r~~~~~i~Pa~~~~~~~~~aF~DV~~~hp~~~~IqalaeaGIIsG~lsg~~~~ 84 (371)
+++|+|+++|||+|||.||+++++. . + .....+.|+||++ |++++|+.|+++|||.|+
T Consensus 29 DGTFrPdkpITRAEFAaMLvRALGL-e--------~----~saas~sFSDVp~--Wya~yIaaAveaGIIsGy------- 86 (892)
T 4aq1_A 29 ETKFGVYDEITRLDAAVILARVLKL-D--------V----GNAKDAGFTDVPK--DRAKYVNALVEAGVLNGK------- 86 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCCCCcchhHHHHHHHHHHHhCC-C--------c----ccccCCCCCcCCH--HHHHHHHHHHHCCCEecC-------
Confidence 4679999999999999999998752 1 1 1123579999974 678999999999999987
Q ss_pred CCCCCCCCCccCCCCCCCcHHHHHHHHHhhhccCCChhhhhhhccCCCccccccccHHHHHHHHHhHhhhhccccccccC
Q 017472 85 SDGSKGQGGIYFFPERFISRYDLINWKAQVDYEVKPDIVEQISRTKMSYMDVREINSEASLGLFMDMLAGEKSIARRVFG 164 (371)
Q Consensus 85 ~~~~d~~~~~~F~Pd~pITRqEma~~kv~L~~~~lp~~~~~~~~~~~~F~Dv~~I~~~a~~av~a~l~aG~~~II~~~fG 164 (371)
++++|+|+++|||+||+.|++.+- .++... ....|.|++.+ |+ ++|... ...||+. |
T Consensus 87 -------~DGTFrPnqpITRAEaAvMLvRAL--gL~~~~-----~~ssFkDV~s~--WA-eaIaaA---ve~GIIs---G 143 (892)
T 4aq1_A 87 -------APGKFGAYDPLTRVEMAKIIANAH--KLKADD-----VKLPFTDVNDT--WA-PYVKAL---YKYEVTK---G 143 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------CCCcCCCCCCccHHHHHHHHHHHh--CCCCcc-----ccCCccCCcHH--HH-HHHHHH---HHcCCee---c
Confidence 457999999999999998876321 222211 24679999864 66 777654 3567887 8
Q ss_pred CC-ccccCCCCCcHHHHHHHHHhchhh
Q 017472 165 QS-KRFQPNKPSTKAQAAVALTSGRMA 190 (371)
Q Consensus 165 ~~-~~F~P~kpVTRAEAAa~L~~g~~~ 190 (371)
++ ++|+|++++||+|||++|++....
T Consensus 144 y~DGtFrPn~~ITRAEAAvmL~RALnl 170 (892)
T 4aq1_A 144 KTPTSFGAYQNITRGDFAQFVYRAVNI 170 (892)
T ss_dssp ---------------------------
T ss_pred CCCCcCCCCCcccHHHHHHHHHHHHhc
Confidence 65 599999999999999999976443
No 3
>3pyw_A S-layer protein SAP; SLH-domains, polysaccharide binding, GST-SLH, cell WALL, STR genomics, PSI-biology, protein structure initiative; 1.80A {Bacillus anthracis}
Probab=99.83 E-value=1.4e-20 Score=171.26 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=89.6
Q ss_pred CCCcCCCCCCCChHHHHHHHHcCCccCCcCCCCCCCCCCCCCCCccCCCCCCCcHHHHHHHHHhhhccCCChhhhhhhcc
Q 017472 50 AAFNDVDVEDPDIESIQALAEAGVIPSQLLGKHYGSDGSKGQGGIYFFPERFISRYDLINWKAQVDYEVKPDIVEQISRT 129 (371)
Q Consensus 50 ~aF~DV~~~hp~~~~IqalaeaGIIsG~lsg~~~~~~~~d~~~~~~F~Pd~pITRqEma~~kv~L~~~~lp~~~~~~~~~ 129 (371)
..|+||+.+||++.+|+.|++.|||+|+ ++++|+|+++|||+|++.|++.+- +++... ..
T Consensus 3 ~~F~Dv~~~~wa~~~I~~l~~~gii~G~--------------~dg~F~P~~~iTR~e~a~~l~r~~--~~~~~~----~~ 62 (203)
T 3pyw_A 3 KTFPDVPADHWGIDSINYLVEKGAVKGN--------------DKGMFEPGKELTRAEAATMMAQIL--NLPIDK----DA 62 (203)
T ss_dssp CCBTTBCTTSTTHHHHHHHHHTTSCCCC--------------TTSCCCTTCBCBHHHHHHHHHHHT--TCCCCT----TC
T ss_pred CCCcCCCCCcHHHHHHHHHHHCcCEecC--------------CCCeECCCCCchHHHHHHHHHHHh--CCCCCc----CC
Confidence 5899999999999999999999999987 457999999999999999877432 222111 12
Q ss_pred CCCccccccccHHHHHHHHHhHhhhhccccccccCCCccccCCCCCcHHHHHHHHHhchh
Q 017472 130 KMSYMDVREINSEASLGLFMDMLAGEKSIARRVFGQSKRFQPNKPSTKAQAAVALTSGRM 189 (371)
Q Consensus 130 ~~~F~Dv~~I~~~a~~av~a~l~aG~~~II~~~fG~~~~F~P~kpVTRAEAAa~L~~g~~ 189 (371)
..+|.|++ +.|+.++|.... ..|||. |+++.|+|+++|||+|+|++|++.-.
T Consensus 63 ~~~F~Dv~--~~w~~~~i~~a~---~~Gii~---g~~~~F~P~~~iTR~e~a~~l~r~~~ 114 (203)
T 3pyw_A 63 KPSFADSQ--GQWYTPFIAAVE---KAGVIK---GTGNGFEPNGKIDRVSMASLLVEAYK 114 (203)
T ss_dssp CCSCGGGC--SSTTHHHHHHHH---HTTSSC---CCSSCCCTTSBCBHHHHHHHHHHHHT
T ss_pred CCCCCCCC--cHHHHHHHHHHH---HCcCee---cCCCCCCCCCcccHHHHHHHHHHHhc
Confidence 46799996 567888887653 567887 86544999999999999999996543
No 4
>4aq1_A SBSB protein; structural protein, S-layer protein, nanobody; 2.42A {Geobacillus stearothermophilus} PDB: 4aq1_C
Probab=99.58 E-value=1.4e-16 Score=169.84 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=0.0
Q ss_pred CCCcCCCCCCCChHHHHHHHHcCCccCCcCCCCCCCCCCCCCCCccCCCCCCCcHHHHHHHHHhhhccCCChhhhhhhcc
Q 017472 50 AAFNDVDVEDPDIESIQALAEAGVIPSQLLGKHYGSDGSKGQGGIYFFPERFISRYDLINWKAQVDYEVKPDIVEQISRT 129 (371)
Q Consensus 50 ~aF~DV~~~hp~~~~IqalaeaGIIsG~lsg~~~~~~~~d~~~~~~F~Pd~pITRqEma~~kv~L~~~~lp~~~~~~~~~ 129 (371)
+.|+||+ +|| +.+|+.|++.|||.|+ ++++|+|+++|||+|++.|++.+. .++... ..
T Consensus 2 ASFsDV~-gHW-keaIe~LaekGIIkGY--------------~DGTFrPdkpITRAEFAaMLvRAL--GLe~~s----aa 59 (892)
T 4aq1_A 2 ASFTDVA-PQY-KDAIDFLVSTGATKGK--------------TETKFGVYDEITRLDAAVILARVL--KLDVGN----AK 59 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCccCCC-HHH-HHHHHHHHHCCCEeeC--------------CCCcCCCCcchhHHHHHHHHHHHh--CCCccc----cc
Confidence 4799997 477 9999999999999987 457999999999999998776332 222211 12
Q ss_pred CCCccccccccHHHHHHHHHhHhhhhccccccccCCC-ccccCCCCCcHHHHHHHHHhchhhccccHHHhHHHHHHhhHH
Q 017472 130 KMSYMDVREINSEASLGLFMDMLAGEKSIARRVFGQS-KRFQPNKPSTKAQAAVALTSGRMAKAISNELSRLEAERSSRQ 208 (371)
Q Consensus 130 ~~~F~Dv~~I~~~a~~av~a~l~aG~~~II~~~fG~~-~~F~P~kpVTRAEAAa~L~~g~~~~~i~~eL~rleae~~~~~ 208 (371)
..+|.|++.| ++++|... ...|||. |++ ++|+|++|+||+|+|++|.+.-......
T Consensus 60 s~sFSDVp~W---ya~yIaaA---veaGIIs---Gy~DGTFrPnqpITRAEaAvMLvRALgL~~~~-------------- 116 (892)
T 4aq1_A 60 DAGFTDVPKD---RAKYVNAL---VEAGVLN---GKAPGKFGAYDPLTRVEMAKIIANAHKLKADD-------------- 116 (892)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCcCCHH---HHHHHHHH---HHCCCEe---cCCCCcCCCCCCccHHHHHHHHHHHhCCCCcc--------------
Confidence 3579998854 56777654 4577887 874 6999999999999999999654322110
Q ss_pred HHHHHHHhhhhhcchhhHHHH
Q 017472 209 AEMAEIRSQLFDSGDIQRWWD 229 (371)
Q Consensus 209 ~~~~~~~~~~~~~~di~~~w~ 229 (371)
....|.|+..+|.
T Consensus 117 --------~~ssFkDV~s~WA 129 (892)
T 4aq1_A 117 --------VKLPFTDVNDTWA 129 (892)
T ss_dssp ---------------------
T ss_pred --------ccCCccCCcHHHH
Confidence 2345888888887
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=77.76 E-value=14 Score=37.24 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhHHHH
Q 017472 241 EVEKLYIAARCDLEE 255 (371)
Q Consensus 241 ~~e~~~~~~~~~l~~ 255 (371)
..++.+...+.++++
T Consensus 474 ~~~~~l~~~~~~i~~ 488 (597)
T 3oja_B 474 QQEQLLQGLHAEIDT 488 (597)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 333333333333333
No 6
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=77.38 E-value=29 Score=28.54 Aligned_cols=88 Identities=20% Similarity=0.173 Sum_probs=53.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhH
Q 017472 230 KKFSEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTL 309 (371)
Q Consensus 230 ~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~ 309 (371)
+.|...+.--.++++.-.+.-..+++.+ ...-.-++.++..|-+|+.|+..-.+-|-. |
T Consensus 15 KqL~~~~q~~~e~e~~k~eL~~~~~~~~----------~~~~~k~~eq~~~le~lk~eL~~~~~el~~-----------l 73 (107)
T 2no2_A 15 KQVSMARQAQVDLEREKKELEDSLERIS----------DQGQRKTQEQLEVLESLKQELATSQRELQV-----------L 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Confidence 4455555566666666666666666554 222233456777777788777776655544 4
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 017472 310 QDTLSDLQTKLEGLLDTKSRSEAEKEALR 338 (371)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~le~e~~al~ 338 (371)
+..+...+.....++..-..|+.||.+|.
T Consensus 74 q~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 74 QGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555556666677888888774
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=76.82 E-value=29 Score=38.85 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 017472 307 CTLQDTLSDLQTKLEGLLDTKSRSEAEKEAL 337 (371)
Q Consensus 307 ~~~~~l~~~~~~~~~~~~~~~~~le~e~~al 337 (371)
+++++++.+++.+...+...+..|+.....|
T Consensus 1012 e~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1012 EWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333
No 8
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=76.28 E-value=33 Score=28.65 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=44.3
Q ss_pred HHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 017472 256 ELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKE 335 (371)
Q Consensus 256 ~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~ 335 (371)
.|.+=+..+..++.++..+--+.+.=..+-.+.++++.+|...+++.-. -.++++.+.+...+.-..|.++|+
T Consensus 35 ~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~-------~l~el~~rleeeee~~~~L~~~kk 107 (129)
T 2fxo_A 35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEA-------KVKEMNKRLEDEEEMNAELTAKKR 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333345567777788777777777677777889999999887766543 333333343333344444444444
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.72 E-value=55 Score=30.04 Aligned_cols=56 Identities=4% Similarity=-0.012 Sum_probs=29.3
Q ss_pred hhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 017472 283 NLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALR 338 (371)
Q Consensus 283 ~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~ 338 (371)
.|..++-+..+++...+..+..-+..+..+..++.....++...-.+++.|...|.
T Consensus 108 ~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 108 QANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555555555555555555555555555544
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.50 E-value=23 Score=36.90 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhh
Q 017472 283 NLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLE 321 (371)
Q Consensus 283 ~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~ 321 (371)
.|+.+|+.|+++|...+-.|-.=...|+||-.||.-+..
T Consensus 121 yLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 121 VLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555666665555543
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=68.83 E-value=20 Score=40.12 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=4.8
Q ss_pred cHHHHHHHHHH
Q 017472 15 TRREYARWLVR 25 (371)
Q Consensus 15 TRaEFA~~Lvr 25 (371)
|=.-|+.-|..
T Consensus 550 td~~~~~kl~~ 560 (1184)
T 1i84_S 550 TDTSFVEKLIQ 560 (1184)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 33445444443
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=68.81 E-value=1e+02 Score=38.73 Aligned_cols=60 Identities=8% Similarity=0.134 Sum_probs=35.3
Q ss_pred HHHHHHHhhHHHHHHHHhhhhhhhc---hhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 017472 276 CQRQLLLNLKDEVDEMSGRLESERA---TYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKE 335 (371)
Q Consensus 276 ~~~~~l~~l~~ev~~~~~~l~~~~~---~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~ 335 (371)
.-++.|..++.++.+.-++|+.-+. +.+.||++|+.-...++.+.+....|-.-|..||.
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3344455555544444444433333 34557777777777777777777777777777765
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=64.70 E-value=1.3e+02 Score=37.73 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=20.1
Q ss_pred CCCcCCCCCCCCh-HHHHHHHHcCCccCC
Q 017472 50 AAFNDVDVEDPDI-ESIQALAEAGVIPSQ 77 (371)
Q Consensus 50 ~aF~DV~~~hp~~-~~IqalaeaGIIsG~ 77 (371)
--|+|-.--++.| .+|..+...|=|+|-
T Consensus 1708 FL~tD~qi~~e~FLE~IN~lL~sGEVP~L 1736 (3245)
T 3vkg_A 1708 FIFDESNVLESSFLERMNTLLAGGEVPGL 1736 (3245)
T ss_dssp EEEEGGGCSSTHHHHHHHHHHHHSCCTTS
T ss_pred EEEeccccccHHHHHHHHHHhccCCcccc
Confidence 3566655556656 589999999988864
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=62.30 E-value=1.3e+02 Score=33.73 Aligned_cols=53 Identities=19% Similarity=0.112 Sum_probs=25.7
Q ss_pred HHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 017472 279 QLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSE 331 (371)
Q Consensus 279 ~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le 331 (371)
+.|-.+..|....-..+.+..-++...++.++++.++.+.-.+...+++.+|+
T Consensus 970 ~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444445555555555555555554444444444444
No 15
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=55.51 E-value=66 Score=26.82 Aligned_cols=34 Identities=29% Similarity=0.240 Sum_probs=23.6
Q ss_pred HHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHH
Q 017472 278 RQLLLNLKDEVDEMSGRLESERATYVAEKCTLQD 311 (371)
Q Consensus 278 ~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~ 311 (371)
.+.++.++.+|-+++..|+-.|-.|.+|=.+|++
T Consensus 65 qq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 65 QQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888999999999999888888877666554
No 16
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=53.03 E-value=1.1e+02 Score=26.41 Aligned_cols=72 Identities=22% Similarity=0.148 Sum_probs=45.7
Q ss_pred cccCCCCCcHHHHHHHHHhchhhccccHHHhHHHHHHhhHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhHHHHHHHHH
Q 017472 168 RFQPNKPSTKAQAAVALTSGRMAKAISNELSRLEAERSSRQAEMAEIRSQLFDSGDIQRWWDKKFSEERARGFEVEKLYI 247 (371)
Q Consensus 168 ~F~P~kpVTRAEAAa~L~~g~~~~~i~~eL~rleae~~~~~~~~~~~~~~~~~~~di~~~w~~~~~~e~~~~~~~e~~~~ 247 (371)
+|.--.|..-.+..-+|. .||-=-+++.+|...|.+=+..-+|+. .=.++ +.|..+..+.+.++
T Consensus 15 ~~~~~~p~~~~elik~L~-------------~le~sassDa~vrq~Ia~LP~eVsd~s--~l~kl-kDk~~~e~l~~~ve 78 (152)
T 4fla_A 15 YFQGAGPLLTEELIKALQ-------------DLENAASGDATVRQKIASLPQEVQDVS--LLEKI-TDKEAAERLSKTVD 78 (152)
T ss_dssp --------CHHHHHHHHH-------------HHHHHHHHHHHHHHHHHTSCGGGTCGG--GGGGC-CSHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHH-------------HhhccccchHHHHHHHHcCCccccCHH--HHHHc-ccHHHHHHHHHHHH
Confidence 677777777777776654 355556778888888888777777754 23333 45888888888888
Q ss_pred HHHhHHHH
Q 017472 248 AARCDLEE 255 (371)
Q Consensus 248 ~~~~~l~~ 255 (371)
+|..-|++
T Consensus 79 eA~~~L~e 86 (152)
T 4fla_A 79 EACLLLAE 86 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 17
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=52.70 E-value=43 Score=24.32 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 017472 308 TLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVEDEARKSQARA 355 (371)
Q Consensus 308 ~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ea~~~~~~a 355 (371)
.++.|.++++.=...|..|++ +..+|.-.=.=+.+||.|+.+|-
T Consensus 5 ki~~Lss~V~~L~~kVdqLss----dV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASN----DANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666665555665555 33344333336788999888773
No 18
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.36 E-value=1.4e+02 Score=26.11 Aligned_cols=90 Identities=14% Similarity=0.136 Sum_probs=54.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhh
Q 017472 229 DKKFSEERARGFEVEKLYIAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCT 308 (371)
Q Consensus 229 ~~~~~~e~~~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~ 308 (371)
..+|+.=-.+...+|.-+..++++|+..+. +-+.+. .+|.+ +..|.+++..+..|..+
T Consensus 5 StKLI~Ain~qs~LeD~L~~~R~el~~~~~-ri~~lE-----------------~~r~~----~~~l~~~~~~~~~e~~~ 62 (154)
T 2ocy_A 5 STQLIESVDKQSHLEEQLNKSLKTIASQKA-AIENYN-----------------QLKED----YNTLKRELSDRDDEVKR 62 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTH-----------------HHHHH----HHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHH-HHHHHH-----------------HHHHH----HHHHHHHHhhhhHHHHH
Confidence 356777778888889999999999986654 222221 12211 22233444556666666
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 017472 309 LQDTLSDLQTKLEGLLDTKSRSEAEKEALRIL 340 (371)
Q Consensus 309 ~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~ 340 (371)
|..-+.+-......+..-+..++.|-+-|+-.
T Consensus 63 L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas 94 (154)
T 2ocy_A 63 LREDIAKENELRTKAEEEADKLNKEVEDLTAS 94 (154)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555556666777777777777643
No 19
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.32 E-value=1.1e+02 Score=24.47 Aligned_cols=70 Identities=16% Similarity=0.145 Sum_probs=36.5
Q ss_pred HHHHhHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhh
Q 017472 247 IAARCDLEEELIVQEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGL 323 (371)
Q Consensus 247 ~~~~~~l~~~~~~~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~ 323 (371)
+..+..|..+...-..++..+-|+++.++.+...|- ..+++|-..--.|.-|...+..-+-+.+.++++|
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le-------~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQ-------AEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666677777777776655443 2333333344444445444444444444444443
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.84 E-value=81 Score=26.86 Aligned_cols=29 Identities=0% Similarity=-0.109 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhHHHHHH
Q 017472 229 DKKFSEERARGFEVEKLYIAARCDLEEEL 257 (371)
Q Consensus 229 ~~~~~~e~~~~~~~e~~~~~~~~~l~~~~ 257 (371)
..++..-+.....++...++...|+..++
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK 95 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLK 95 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444444
No 21
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=46.59 E-value=15 Score=38.13 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhh
Q 017472 269 KEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGL 323 (371)
Q Consensus 269 k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~ 323 (371)
.++--.+.+.++|.+-+.|.+++.++|......-.-|+..|+.-..+.+.+-..+
T Consensus 370 e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~ 424 (575)
T 2i1j_A 370 EQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRI 424 (575)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567889999999999999999999998888888888765544444444333
No 22
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=42.60 E-value=17 Score=24.68 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhHH
Q 017472 310 QDTLSDLQTKLEGLLDTKSRSE 331 (371)
Q Consensus 310 ~~l~~~~~~~~~~~~~~~~~le 331 (371)
+||.++++.|.++|.++|++-+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 6889999999999999998643
No 23
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.97 E-value=3.2e+02 Score=28.39 Aligned_cols=9 Identities=11% Similarity=-0.027 Sum_probs=4.3
Q ss_pred CCcHHHHHH
Q 017472 101 FISRYDLIN 109 (371)
Q Consensus 101 pITRqEma~ 109 (371)
++|=..|+.
T Consensus 287 ~vtG~~L~~ 295 (592)
T 1f5n_A 287 QVNGPRLES 295 (592)
T ss_dssp ECBHHHHHH
T ss_pred cccHHHHHH
Confidence 455544443
No 24
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=33.14 E-value=1.1e+02 Score=23.96 Aligned_cols=47 Identities=17% Similarity=0.286 Sum_probs=27.2
Q ss_pred HHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 017472 291 MSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSEAEKEAL 337 (371)
Q Consensus 291 ~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al 337 (371)
|+..+..++..+.-|.++++....+...|.+.=...+...|.+--+|
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L 54 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666555555555555554443
No 25
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=33.09 E-value=2.6e+02 Score=24.85 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=37.1
Q ss_pred HHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhh-H----HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 017472 276 CQRQLLLNLKDEVDEMSGRLESERATYVAEKCT-L----QDTLSDLQTKLEGLLDTKSRSEAEKEALRIL 340 (371)
Q Consensus 276 ~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~-~----~~l~~~~~~~~~~~~~~~~~le~e~~al~~~ 340 (371)
..+++|-+|++.+.+++..+.-.-.+..+..+. | ..-..++....+.+.+.+..||.++..|.+.
T Consensus 9 ~~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~ 78 (174)
T 2p22_A 9 NHHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQ 78 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888887776555555544433 1 2333444444555555555555555554443
No 26
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.77 E-value=1.8e+02 Score=22.62 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=10.9
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHH
Q 017472 313 LSDLQTKLEGLLDTKSRSEAEKE 335 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~le~e~~ 335 (371)
+.+++.....+...|.+||...+
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 27
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=31.26 E-value=2.1e+02 Score=23.24 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 017472 305 EKCTLQDTLSDLQTKLEGLLDTKSRSE 331 (371)
Q Consensus 305 e~~~~~~l~~~~~~~~~~~~~~~~~le 331 (371)
..+.|++|+.+|+.+..+|..+|..|+
T Consensus 52 q~~~le~lk~eL~~~~~el~~lq~~l~ 78 (107)
T 2no2_A 52 QLEVLESLKQELATSQRELQVLQGSLE 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777666544
No 28
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=29.05 E-value=70 Score=21.23 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=20.0
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHH
Q 017472 314 SDLQTKLEGLLDTKSRSEAEKEALR 338 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~le~e~~al~ 338 (371)
+++|.|-+++..-+++||.|..-|.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5678888888888999988876654
No 29
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=28.65 E-value=1.4e+02 Score=23.51 Aligned_cols=52 Identities=23% Similarity=0.162 Sum_probs=31.4
Q ss_pred HHHHHhhHHHHHHHH-hhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q 017472 278 RQLLLNLKDEVDEMS-GRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRS 330 (371)
Q Consensus 278 ~~~l~~l~~ev~~~~-~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~l 330 (371)
.|.+..||.-|.||= +++-.++ ..-.=|+-|.-|+..++.+..+|.+++++|
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEk-KLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEW-KLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 355666676666652 2222222 112223667778888888888888888765
No 30
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.60 E-value=72 Score=21.17 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=19.9
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHH
Q 017472 314 SDLQTKLEGLLDTKSRSEAEKEALR 338 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~le~e~~al~ 338 (371)
+++|.|-+++..-+|+||.|..-|+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4678888888888899988877665
No 31
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=27.37 E-value=2.4e+02 Score=24.46 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=7.2
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHH
Q 017472 316 LQTKLEGLLDTKSRSEAEKEALR 338 (371)
Q Consensus 316 ~~~~~~~~~~~~~~le~e~~al~ 338 (371)
++.+++.+..-+-.+++-|+.|+
T Consensus 99 LeAE~aKLeEekQIseASRqgLr 121 (146)
T 2xnx_M 99 LTIEKAKLEEEKQISDASRQSLR 121 (146)
T ss_dssp HHHHHHHHGGGTTTC--------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444444444455555555443
No 32
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.07 E-value=79 Score=21.09 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=19.6
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHH
Q 017472 314 SDLQTKLEGLLDTKSRSEAEKEALR 338 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~le~e~~al~ 338 (371)
+++|.|-+++..-+++||.|..-|.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4677888888888888888876654
No 33
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.14 E-value=1e+02 Score=20.54 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.7
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHH
Q 017472 314 SDLQTKLEGLLDTKSRSEAEKEALR 338 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~le~e~~al~ 338 (371)
++++.|-+++..-+|+||.|..-|.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4677888888888999988876664
No 34
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.56 E-value=3.1e+02 Score=24.11 Aligned_cols=20 Identities=5% Similarity=0.212 Sum_probs=10.7
Q ss_pred hhhhhHHHHHHHHHHhhhhh
Q 017472 304 AEKCTLQDTLSDLQTKLEGL 323 (371)
Q Consensus 304 ~e~~~~~~l~~~~~~~~~~~ 323 (371)
++...|.+|..++...+..+
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKL 129 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 45556666665555444433
No 35
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=22.41 E-value=2.9e+02 Score=21.90 Aligned_cols=73 Identities=26% Similarity=0.268 Sum_probs=36.3
Q ss_pred HHHhhHHhhhhhhHHHHHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHH---hhhhhhhhhhhHHHHHHH
Q 017472 260 QEKNYAEDLKEKAAMDCQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQT---KLEGLLDTKSRSEAEKEA 336 (371)
Q Consensus 260 ~~~~~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~---~~~~~~~~~~~le~e~~a 336 (371)
|+..+..|-+.+++++++...+-.--.---+.+|...+. =...|..+..+++. +.|.+.++|--|+.|..+
T Consensus 10 ~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~------lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 10 RENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTD------KEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777655443222212222222211 12334555555553 457799999999999766
Q ss_pred HH
Q 017472 337 LR 338 (371)
Q Consensus 337 l~ 338 (371)
-+
T Consensus 84 Yr 85 (95)
T 3mov_A 84 YR 85 (95)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 36
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=21.96 E-value=3e+02 Score=21.80 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=22.4
Q ss_pred HhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHH
Q 017472 282 LNLKDEVDEMSGRLESERATYVAEKCTLQDTLS 314 (371)
Q Consensus 282 ~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~ 314 (371)
+.++.++-+..+-+-|-...|.|-+..|+||++
T Consensus 63 n~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~K 95 (96)
T 3q8t_A 63 SEFKRQQLELDDELKSVENQMRYAQMQLDKLKK 95 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555566666667778888888888864
No 37
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.74 E-value=2.1e+02 Score=23.12 Aligned_cols=52 Identities=21% Similarity=0.150 Sum_probs=31.7
Q ss_pred HHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q 017472 280 LLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDLQTKLEGLLDTKSRSE 331 (371)
Q Consensus 280 ~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~le 331 (371)
.+.+|...||+-...|-.+=-....|-..|+..++....=.-....+.++|+
T Consensus 37 tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe 88 (96)
T 1t3j_A 37 TFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELE 88 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4667888888877777766666666666666665555443333444444443
Done!