Query 017472
Match_columns 371
No_of_seqs 159 out of 346
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 14:59:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017472.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/017472hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hw1a1 a.4.5.6 (A:5-78) Fatty 12.8 45 0.0032 23.3 2.0 45 2-77 15-60 (74)
2 d1gqea_ e.38.1.1 (A:) Polypept 12.7 4.3E+02 0.031 23.3 10.5 30 264-293 50-79 (362)
3 d1yf2a2 d.287.1.2 (A:221-425) 11.5 1.6E+02 0.012 21.8 5.3 25 278-302 179-203 (205)
4 d2p06a1 a.204.1.3 (A:1-84) Hyp 9.8 1.3E+02 0.0098 21.1 3.7 32 276-316 36-67 (84)
5 d1s24a_ g.41.5.1 (A:) Two-iron 7.3 93 0.0068 21.0 1.8 12 49-61 28-39 (56)
6 d2dsxa1 g.41.5.1 (A:1-52) Rubr 7.3 73 0.0053 21.3 1.2 12 49-61 27-38 (52)
7 d2pmra1 a.8.11.1 (A:3-77) Unch 7.2 2.9E+02 0.021 19.5 4.7 40 306-346 2-41 (75)
8 d1iroa_ g.41.5.1 (A:) Rubredox 6.9 78 0.0057 21.2 1.2 12 49-61 27-38 (53)
9 d2hs5a1 a.4.5.6 (A:25-93) Puta 6.6 71 0.0052 21.6 0.9 45 2-77 14-58 (69)
10 d1dx8a_ g.41.5.1 (A:) Rubredox 6.3 1.1E+02 0.0078 21.6 1.8 14 49-63 31-44 (70)
No 1
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.81 E-value=45 Score=23.28 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=34.0
Q ss_pred cccCCCCCCCCCC-cHHHHHHHHHHHhcccccCCcccccccccCCCCCCCCCcCCCCCCCChHHHHHHHHcCCccCC
Q 017472 2 QIIEEDVNADELC-TRREYARWLVRINSLLERNPKLRIVPCKSLSGTVVAAFNDVDVEDPDIESIQALAEAGVIPSQ 77 (371)
Q Consensus 2 ~vie~~F~Pn~~I-TRaEFA~~Lvra~~~l~r~~~~~i~Pa~~~~~~~~~aF~DV~~~hp~~~~IqalaeaGIIsG~ 77 (371)
+|+.+.|.||+.+ +-++++..+- | + -++--..++.|.+.|+|...
T Consensus 15 ~I~~g~~~~G~~LPs~~eLa~~~~-------------v-----------------S-r~tvr~Al~~L~~~G~i~~~ 60 (74)
T d1hw1a1 15 SIWNNRFPPGTILPAERELSELIG-------------V-----------------T-RTTLREVLQRLARDGWLTIQ 60 (74)
T ss_dssp HHHTTSSCTTSBCCCHHHHHHHHT-------------C-----------------C-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHcCCCCCcCCCccHHHHHHHHC-------------C-----------------C-HHHHHHHHHHHHHCCcEEEE
Confidence 4778999999999 8999998751 1 1 12345678899999999865
No 2
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=12.68 E-value=4.3e+02 Score=23.31 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=24.6
Q ss_pred hHHhhhhhhHHHHHHHHHHhhHHHHHHHHh
Q 017472 264 YAEDLKEKAAMDCQRQLLLNLKDEVDEMSG 293 (371)
Q Consensus 264 ~~~~~k~~aa~~~~~~~l~~l~~ev~~~~~ 293 (371)
...++||.+.++..-+.+..|+..+++.-+
T Consensus 50 Aqkl~KE~s~L~~iVe~~~~l~~~leDl~e 79 (362)
T d1gqea_ 50 AQALGKERSSLEAVVDTLDQMKQGLEDVSG 79 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999888776644
No 3
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=11.50 E-value=1.6e+02 Score=21.80 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=17.0
Q ss_pred HHHHHhhHHHHHHHHhhhhhhhchh
Q 017472 278 RQLLLNLKDEVDEMSGRLESERATY 302 (371)
Q Consensus 278 ~~~l~~l~~ev~~~~~~l~~~~~~~ 302 (371)
.+.+..|+.--+.++|+|.|+++.|
T Consensus 179 ~~~~~~l~~~k~~Ll~~l~tGel~v 203 (205)
T d1yf2a2 179 KQKKEKLQRMKKKIMELLLTGKVRV 203 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCceee
Confidence 3334445555568899999998765
No 4
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=9.80 E-value=1.3e+02 Score=21.10 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=22.3
Q ss_pred HHHHHHHhhHHHHHHHHhhhhhhhchhhhhhhhHHHHHHHH
Q 017472 276 CQRQLLLNLKDEVDEMSGRLESERATYVAEKCTLQDTLSDL 316 (371)
Q Consensus 276 ~~~~~l~~l~~ev~~~~~~l~~~~~~~~~e~~~~~~l~~~~ 316 (371)
+|-.+|++|-+|+||.-+.+ ||+.-++|+.++
T Consensus 36 seerllsrlfeemdelreav---------ekedwenlrdel 67 (84)
T d2p06a1 36 SEERLLSRLFEEMDELREAV---------EKEDWENLRDEL 67 (84)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---------HTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 45678999999999876654 566666665543
No 5
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=7.32 E-value=93 Score=21.05 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=9.2
Q ss_pred CCCCcCCCCCCCC
Q 017472 49 VAAFNDVDVEDPD 61 (371)
Q Consensus 49 ~~aF~DV~~~hp~ 61 (371)
...|.|+| ++|-
T Consensus 28 GT~F~~LP-~dw~ 39 (56)
T d1s24a_ 28 GTRFEDIP-DDWC 39 (56)
T ss_dssp CCCGGGCC-TTCC
T ss_pred CCChhhCC-CCCC
Confidence 46899997 6774
No 6
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=7.26 E-value=73 Score=21.29 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=9.3
Q ss_pred CCCCcCCCCCCCC
Q 017472 49 VAAFNDVDVEDPD 61 (371)
Q Consensus 49 ~~aF~DV~~~hp~ 61 (371)
...|.|+| ++|-
T Consensus 27 GT~F~~LP-~~w~ 38 (52)
T d2dsxa1 27 GTKFEDLP-DDWA 38 (52)
T ss_dssp TCCGGGSC-TTCB
T ss_pred CCCHHHCC-CCCC
Confidence 46999996 6774
No 7
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=7.24 E-value=2.9e+02 Score=19.51 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhHHH
Q 017472 306 KCTLQDTLSDLQTKLEGLLDTKSRSEAEKEALRILRSWVED 346 (371)
Q Consensus 306 ~~~~~~l~~~~~~~~~~~~~~~~~le~e~~al~~~r~w~e~ 346 (371)
|+|++|-.+-++.-...+.-+..+ ..|+.-|.|+++.++|
T Consensus 2 kErvekYi~~~eeAl~k~~~~~~~-~~~e~il~ma~~Y~~D 41 (75)
T d2pmra1 2 RERIEKDLELLEKNLMEMKSIKLS-DDEEAVVERALNYRDD 41 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccccccC-ccHHHHHHHHHHHHHH
Confidence 455666555555555444333222 2346788899988877
No 8
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=6.88 E-value=78 Score=21.19 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=9.2
Q ss_pred CCCCcCCCCCCCC
Q 017472 49 VAAFNDVDVEDPD 61 (371)
Q Consensus 49 ~~aF~DV~~~hp~ 61 (371)
...|.|+| ++|-
T Consensus 27 GT~F~~LP-~dw~ 38 (53)
T d1iroa_ 27 GTDFKDIP-DDWV 38 (53)
T ss_dssp TCCGGGSC-TTCB
T ss_pred CCCHHHCC-CCCC
Confidence 56999996 6774
No 9
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=6.60 E-value=71 Score=21.62 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=32.3
Q ss_pred cccCCCCCCCCCCcHHHHHHHHHHHhcccccCCcccccccccCCCCCCCCCcCCCCCCCChHHHHHHHHcCCccCC
Q 017472 2 QIIEEDVNADELCTRREYARWLVRINSLLERNPKLRIVPCKSLSGTVVAAFNDVDVEDPDIESIQALAEAGVIPSQ 77 (371)
Q Consensus 2 ~vie~~F~Pn~~ITRaEFA~~Lvra~~~l~r~~~~~i~Pa~~~~~~~~~aF~DV~~~hp~~~~IqalaeaGIIsG~ 77 (371)
.|+.+.|.|++.++=+++|..+ + |+ -.+-...++.|...|+|...
T Consensus 14 ~I~~g~~~~G~~l~~~~La~~~----~--------------------------vS-r~tvr~Al~~L~~~Gli~~~ 58 (69)
T d2hs5a1 14 AIIDGTFRPGARLSEPDICAAL----D--------------------------VS-RNTVREAFQILIEDRLVAHE 58 (69)
T ss_dssp HHHHTSSCTTCEECHHHHHHHH----T--------------------------CC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHcCCCCCcCccCHHHHHHHH----C--------------------------CC-HHHHHHHHHHHHHCCcEEEE
Confidence 3678999999999877777654 1 11 13456788899999998865
No 10
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=6.34 E-value=1.1e+02 Score=21.62 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=9.9
Q ss_pred CCCCcCCCCCCCChH
Q 017472 49 VAAFNDVDVEDPDIE 63 (371)
Q Consensus 49 ~~aF~DV~~~hp~~~ 63 (371)
...|.|+| ++|--+
T Consensus 31 GT~F~dLP-~dW~CP 44 (70)
T d1dx8a_ 31 GTPFVDLS-DSFMCP 44 (70)
T ss_dssp SCCGGGSC-TTCBCT
T ss_pred CCChHHCC-CCCCCc
Confidence 46899997 677543
Done!