BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017473
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 9 YKSQPSDE-LILCLLKKKRLDPHFSYGPIKDIGHICSLEPWDLATESETDSEDQTCYFFY 67
++ P+DE L++ L +K FS I +I + +PW L ++ ++ ++F+
Sbjct: 21 FRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE---WYFF 76
Query: 68 KPR---YTKSNDAHRATNAGSWKVTRKVSQIEARNGLTGTKKSLTFYLRGLPRKEAITEW 124
PR Y + +R +G WK T I G KK+L FY+ P K T W
Sbjct: 77 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAP-KGTKTNW 135
Query: 125 GMHEYHV-----KDDPSYEKEFVLCRIFRRRNKKKR 155
MHEY + ++ + ++VLCRI+++++ ++
Sbjct: 136 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 9 YKSQPSDE-LILCLLKKKRLDPHFSYGPIKDIGHICSLEPWDLATESETDSEDQTCYFFY 67
++ P+DE L++ L +K FS I +I + +PW L ++ ++ ++F+
Sbjct: 24 FRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE---WYFF 79
Query: 68 KPR---YTKSNDAHRATNAGSWKVTRKVSQIEARNGLTGTKKSLTFYLRGLPRKEAITEW 124
PR Y + +R +G WK T I G KK+L FY+ P K T W
Sbjct: 80 SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAP-KGTKTNW 138
Query: 125 GMHEYHV-----KDDPSYEKEFVLCRIFRRRNKKKR 155
MHEY + ++ + ++VLCRI+++++ ++
Sbjct: 139 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 18/152 (11%)
Query: 14 SDELILCLLKKKRLDPHFSYGPIKDIGHICSLEPWDLATESETDSEDQTCYFFYKPR--- 70
DEL+ L +K I ++ + +PWDL + + + ++F+ PR
Sbjct: 25 DDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALFGARE---WYFFTPRDRK 80
Query: 71 YTKSNDAHRATNAGSWKVTRKVSQIEARNGLTGTKKSLTFYLRGLPRKEAITEWGMHEYH 130
Y + +RA G WK T + R G KK+L FY PR T+W MHEY
Sbjct: 81 YPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG-VKTDWIMHEYR 139
Query: 131 VKDDPSYEK----------EFVLCRIFRRRNK 152
+ D ++VLCR++ ++N+
Sbjct: 140 LADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 217 TFAYPQSITDDSPTQLSPGNH 237
T YP+ +T P+ LSPGNH
Sbjct: 516 TLDYPELLTHSGPSILSPGNH 536
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 217 TFAYPQSITDDSPTQLSPGNH 237
T YP+ +T P+ LSPGNH
Sbjct: 516 TLDYPELLTHSGPSILSPGNH 536
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,002,195
Number of Sequences: 62578
Number of extensions: 511165
Number of successful extensions: 569
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 7
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)