Query 017473
Match_columns 371
No_of_seqs 173 out of 906
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 15:00:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ut7_A No apical meristem prot 100.0 7.6E-51 2.6E-55 366.1 14.6 147 3-153 15-169 (171)
2 3ulx_A Stress-induced transcri 100.0 7.7E-51 2.6E-55 367.3 14.3 145 3-151 13-170 (174)
3 3bh1_A UPF0371 protein DIP2346 11.9 47 0.0016 34.2 -0.1 16 334-349 215-230 (507)
4 1ldd_A APC2WHB, anaphase promo 11.2 97 0.0033 24.1 1.5 26 5-31 36-63 (74)
5 1y29_A Huwentoxin-X; A double- 10.8 1.1E+02 0.0036 19.9 1.3 17 273-289 8-24 (28)
6 3ip4_C Aspartyl/glutamyl-tRNA( 10.0 77 0.0026 25.4 0.6 18 337-358 51-68 (100)
7 3h0l_C Glutamyl-tRNA(Gln) amid 9.8 76 0.0026 25.1 0.5 17 337-358 49-65 (94)
8 2c4b_A Barnase mcoeeti fusion; 8.4 2.8E+02 0.0095 24.2 3.5 45 15-63 6-54 (143)
9 2oh5_A Polyhedrin, C-polyhedri 8.1 2.6E+02 0.009 25.3 3.4 27 83-109 140-167 (248)
10 3vdj_A Circumsporozoite (CS) p 8.0 1.7E+02 0.0059 23.0 1.9 17 9-25 2-18 (77)
No 1
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=7.6e-51 Score=366.11 Aligned_cols=147 Identities=29% Similarity=0.575 Sum_probs=123.6
Q ss_pred CCCCCCceECCc-HHHHHHHHhhhhcCCCCCCCCccccCCccCCCCCCccccCCCCCCCceEEEee-ccC-CCCCCCCcc
Q 017473 3 SHMREWYKSQPS-DELILCLLKKKRLDPHFSYGPIKDIGHICSLEPWDLATESETDSEDQTCYFFY-KPR-YTKSNDAHR 79 (371)
Q Consensus 3 ~~LPPGfRF~PT-EELV~~YLr~KI~G~plp~~vI~ev~DVY~~ePWdL~~~~pGk~~d~eWYFFS-R~r-y~~G~R~nR 79 (371)
..|||||||+|| ||||.+||++|+.|.+++.++|.++ |||++|||+|+... ...+++||||+ |++ |++|.|++|
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~-Diy~~~Pw~Lp~~~--~~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKA--LFGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHS--SSCSSEEEEEEECCC-------CCE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeec-ccccCChhHhhchh--hcCCccEEEEeccccccCCCCcccc
Confidence 579999999999 9999999999999999999999999 99999999997653 23478999999 777 999999999
Q ss_pred cCCCceeeeeCCceeEeeCCceEEEEEEEeeeccCCCCCCCCcCeEEEEEEeCCCCC-----CCCCeEEEEEEEccCCC
Q 017473 80 ATNAGSWKVTRKVSQIEARNGLTGTKKSLTFYLRGLPRKEAITEWGMHEYHVKDDPS-----YEKEFVLCRIFRRRNKK 153 (371)
Q Consensus 80 atg~G~WKatG~dK~I~~~g~vVG~KKtLvFY~gr~~r~p~KT~WvMhEYrL~~~~~-----~~~d~VLCRIykK~~~~ 153 (371)
+|++||||+||++++|..++.+||+||+|+||.|+.+ .+.||+|+||||+|..... ..++|||||||+|+...
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p-~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAP-KGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTT-SCEEEEEEEEEEEECCCC--------CCEEEEEEEECC---
T ss_pred cCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCC-CCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCCC
Confidence 9999999999999999998999999999999999832 3349999999999998752 36899999999988654
No 2
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7.7e-51 Score=367.32 Aligned_cols=145 Identities=29% Similarity=0.597 Sum_probs=126.0
Q ss_pred CCCCCCceECCc-HHHHHHHHhhhhcCCCCCCCCccccCCccCCCCCCccccCCCCCCCceEEEee-ccC-CCCCCCCcc
Q 017473 3 SHMREWYKSQPS-DELILCLLKKKRLDPHFSYGPIKDIGHICSLEPWDLATESETDSEDQTCYFFY-KPR-YTKSNDAHR 79 (371)
Q Consensus 3 ~~LPPGfRF~PT-EELV~~YLr~KI~G~plp~~vI~ev~DVY~~ePWdL~~~~pGk~~d~eWYFFS-R~r-y~~G~R~nR 79 (371)
..|||||||+|| ||||.+||++|+.|.+++..+|.++ |||++|||+|+.... ..+++||||+ |++ |++|.|.+|
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~ev-Dvy~~~Pw~Lp~~~~--~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERAL--FGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEEC-CGGGSCGGGSGGGCS--SCSSEEEEEEECCC-----CCSCE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeec-ccccCCchhhhhhhc--cCCceEEEEeccccccCCCCCcee
Confidence 479999999999 9999999999999999999999999 999999999976532 2368999999 877 999999999
Q ss_pred cCCCceeeeeCCceeEeeCCceEEEEEEEeeeccCCCCCCCCcCeEEEEEEeCCCCC----------CCCCeEEEEEEEc
Q 017473 80 ATNAGSWKVTRKVSQIEARNGLTGTKKSLTFYLRGLPRKEAITEWGMHEYHVKDDPS----------YEKEFVLCRIFRR 149 (371)
Q Consensus 80 atg~G~WKatG~dK~I~~~g~vVG~KKtLvFY~gr~~r~p~KT~WvMhEYrL~~~~~----------~~~d~VLCRIykK 149 (371)
+|++||||+||++++|..+|.+||+||+|+||.|+.+ .+.||+|+||||+|..... ..++|||||||+|
T Consensus 90 ~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p-~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAP-RGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTT-SCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred ecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCC-CCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 9999999999999999998999999999999999832 3349999999999998642 2579999999998
Q ss_pred cC
Q 017473 150 RN 151 (371)
Q Consensus 150 ~~ 151 (371)
+.
T Consensus 169 ~~ 170 (174)
T 3ulx_A 169 KN 170 (174)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 3
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure INI PSI-2; 2.51A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=11.90 E-value=47 Score=34.18 Aligned_cols=16 Identities=44% Similarity=0.993 Sum_probs=12.7
Q ss_pred ccccccCCcccccccC
Q 017473 334 EWQLPLHHPLEIHNSA 349 (371)
Q Consensus 334 ~~~~~~~~~~~~~~~~ 349 (371)
-|.|||.||+.|---|
T Consensus 215 iWNlPLkHPVNlAYEA 230 (507)
T 3bh1_A 215 IWNLPLEHPVNLAYEA 230 (507)
T ss_dssp CTTSCTTSHHHHHHHH
T ss_pred ccCCcCCChHHHHHHH
Confidence 4999999999775443
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=11.20 E-value=97 Score=24.07 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=21.1
Q ss_pred CCCCceECC-c-HHHHHHHHhhhhcCCCC
Q 017473 5 MREWYKSQP-S-DELILCLLKKKRLDPHF 31 (371)
Q Consensus 5 LPPGfRF~P-T-EELV~~YLr~KI~G~pl 31 (371)
.|.|+.|.. | +||-. ||-.|+....+
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL 63 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRL 63 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeE
Confidence 367899998 8 88866 89999987754
No 5
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=10.84 E-value=1.1e+02 Score=19.89 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=12.9
Q ss_pred CCCCCCcccCCcccccc
Q 017473 273 PNYSPAQQLPCDHFISA 289 (371)
Q Consensus 273 ~~~~~~~~~~~~~~~~~ 289 (371)
|-|-+++.||||+--+.
T Consensus 8 pC~~~~~riPCCG~Cs~ 24 (28)
T 1y29_A 8 PCYGATQKIPCCGVCSH 24 (28)
T ss_dssp CCCTTCCSCCBSSCBSS
T ss_pred cccCCcccccccccccc
Confidence 44778999999986543
No 6
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=10.03 E-value=77 Score=25.39 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=14.1
Q ss_pred cccCCcccccccCCCchhhhhh
Q 017473 337 LPLHHPLEIHNSAENPFRKDVS 358 (371)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~ 358 (371)
-|+.||+++ .|+||.|+-
T Consensus 51 eP~~~~~~~----~~~lReD~v 68 (100)
T 3ip4_C 51 EPTYHVLDL----QNVLREDKA 68 (100)
T ss_dssp CCCSCCSCC----CCCCBCSCC
T ss_pred Ccccccccc----cCCCCCCCC
Confidence 488899875 478999974
No 7
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=9.78 E-value=76 Score=25.08 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=13.4
Q ss_pred cccCCcccccccCCCchhhhhh
Q 017473 337 LPLHHPLEIHNSAENPFRKDVS 358 (371)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~ 358 (371)
-|+.||++. |++|.|+-
T Consensus 49 eP~~~~~~~-----~~lReD~v 65 (94)
T 3h0l_C 49 EPYIQEFEE-----TPMREDEP 65 (94)
T ss_dssp CCCCCCCSS-----CCCBCSCC
T ss_pred CcccCcccc-----cCCCCCCC
Confidence 388899864 79999974
No 8
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=8.37 E-value=2.8e+02 Score=24.19 Aligned_cols=45 Identities=11% Similarity=-0.030 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhcCCCCCCCCcc--ccCCccCCCCC--CccccCCCCCCCceE
Q 017473 15 DELILCLLKKKRLDPHFSYGPIK--DIGHICSLEPW--DLATESETDSEDQTC 63 (371)
Q Consensus 15 EELV~~YLr~KI~G~plp~~vI~--ev~DVY~~ePW--dL~~~~pGk~~d~eW 63 (371)
.+-|..||+. ...||...|. ++ +-.+-+|- .|++..||++.++..
T Consensus 6 ~~~V~~yl~~---~~~LP~~yiTK~eA-~~~GW~p~kgnL~~v~pgk~igG~v 54 (143)
T 2c4b_A 6 FDGVADYLQT---YHKLPDNYITKSEA-QALGWVASKGNLADVAPGKSIGGDI 54 (143)
T ss_dssp HHHHHHHHHH---HSSCCTTEECHHHH-HHTTCCGGGTCHHHHSTTCEEEEEE
T ss_pred hhHHHHHHHH---hCcCCcccccHHHH-HHcCCCCCcCcHhhcCCCcccCCce
Confidence 4556678887 3457777776 44 44566774 577767888655555
No 9
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=8.15 E-value=2.6e+02 Score=25.30 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=21.7
Q ss_pred CceeeeeCC-ceeEeeCCceEEEEEEEe
Q 017473 83 AGSWKVTRK-VSQIEARNGLTGTKKSLT 109 (371)
Q Consensus 83 ~G~WKatG~-dK~I~~~g~vVG~KKtLv 109 (371)
.--|.+||- -++|..+|++||+...|.
T Consensus 140 shpweatgikyrki~~dgeivgyshyfe 167 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFE 167 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEE
T ss_pred cCCccccCceEEEeeecceEeeeeeeee
Confidence 456999986 577888999999988663
No 10
>3vdj_A Circumsporozoite (CS) protein; TSR, ATSR, cell invasion; 1.70A {Plasmodium falciparum} PDB: 3vdk_A 3vdl_A
Probab=7.97 E-value=1.7e+02 Score=22.99 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=12.9
Q ss_pred ceECCcHHHHHHHHhhh
Q 017473 9 YKSQPSDELILCLLKKK 25 (371)
Q Consensus 9 fRF~PTEELV~~YLr~K 25 (371)
+.|-|++|.|..||.+-
T Consensus 2 ~~~~p~~~~i~~~l~ki 18 (77)
T 3vdj_A 2 VEFEPSDKHIKEYLNKI 18 (77)
T ss_dssp CCCSCCHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHH
Confidence 35889977888888753
Done!