BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017474
         (371 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NG0|A Chain A, The Three-Dimensional Structure Of Cocksfoot Mottle Virus
           At 2.7a Resolution
 pdb|1NG0|B Chain B, The Three-Dimensional Structure Of Cocksfoot Mottle Virus
           At 2.7a Resolution
 pdb|1NG0|C Chain C, The Three-Dimensional Structure Of Cocksfoot Mottle Virus
           At 2.7a Resolution
          Length = 253

 Score = 31.2 bits (69), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 17/116 (14%)

Query: 1   MPLCTSQNDAPPESSTSALGFHLDAA-----SLRRLSNKPITLRVSVYAGRMGSTCGVSS 55
           +P C++Q D   E     +GF LD A     + R +++       +V+ G  GS+   +S
Sbjct: 118 LPRCSTQTDGSIE-----MGFLLDYADSVPTNTRTMASSTSFTTSNVWGGGDGSSLLHTS 172

Query: 56  GKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIHLTVRSEPDPRFVFQ 111
            K +G  N +      D     F N W KL     + S   HLT    P  RFV +
Sbjct: 173 MKSMG--NAVTSALPCDE----FSNKWFKLSWSTPEESENAHLTDTYVP-ARFVVR 221


>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
 pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
 pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
          Length = 768

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 2   PLCTSQNDAPPES---STSALGFHLDAASLRRLSNKPITL 38
           P+C S+N  PP+    S   +   L + ++  ++NKP+T+
Sbjct: 81  PICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNKPVTV 120


>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
           Of Sec31
          Length = 772

 Score = 29.6 bits (65), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 2   PLCTSQNDAPPES---STSALGFHLDAASLRRLSNKPITL 38
           P+C S+N  PP+    S   +   L + ++  ++NKP+T+
Sbjct: 85  PICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNKPVTV 124


>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
           (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
           1.90 A Resolution
 pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
           (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
           1.90 A Resolution
          Length = 279

 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 77  VFRNGWLKLGREPDKPSARIHLTVRSEPDPRFVFQFGGEPECSPVV 122
           VF N  L   +EP+   A IH  ++S    RFV +FGG+     ++
Sbjct: 121 VFSNAXLHWVKEPEAAIASIHQALKS--GGRFVAEFGGKGNIKYIL 164


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,933,403
Number of Sequences: 62578
Number of extensions: 447046
Number of successful extensions: 809
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 5
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)