Query 017474
Match_columns 371
No_of_seqs 57 out of 59
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 08:53:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06219 DUF1005: Protein of u 100.0 4E-183 8E-188 1340.3 35.8 356 1-363 54-460 (460)
2 cd08690 C2_Freud-1 C2 domain f 89.8 2.7 5.9E-05 37.6 9.1 89 18-127 59-150 (155)
3 cd04019 C2C_MCTP_PRT_plant C2 81.0 6.6 0.00014 34.3 6.9 63 36-103 62-132 (150)
4 cd04016 C2_Tollip C2 domain pr 78.5 11 0.00023 32.1 7.3 58 36-101 62-120 (121)
5 cd04042 C2A_MCTP_PRT C2 domain 78.3 13 0.00027 30.2 7.4 60 36-104 61-121 (121)
6 cd08400 C2_Ras_p21A1 C2 domain 76.5 15 0.00032 30.6 7.4 61 36-105 62-125 (126)
7 cd04046 C2_Calpain C2 domain p 76.4 16 0.00036 30.1 7.7 60 35-106 62-125 (126)
8 cd04022 C2A_MCTP_PRT_plant C2 74.0 12 0.00026 30.7 6.2 60 36-102 64-125 (127)
9 cd04051 C2_SRC2_like C2 domain 72.6 16 0.00035 29.6 6.6 70 20-98 54-125 (125)
10 cd04015 C2_plant_PLD C2 domain 68.1 25 0.00055 30.8 7.3 56 36-101 98-156 (158)
11 cd08401 C2A_RasA2_RasA3 C2 dom 64.6 31 0.00067 28.6 6.8 58 36-102 62-121 (121)
12 cd08378 C2B_MCTP_PRT_plant C2 63.1 33 0.00071 28.5 6.7 61 35-101 56-118 (121)
13 PF08122 NDUF_B12: NADH-ubiqui 60.4 3 6.5E-05 32.1 0.1 14 233-246 3-16 (57)
14 cd08373 C2A_Ferlin C2 domain f 60.2 68 0.0015 26.2 8.0 63 35-106 56-120 (127)
15 cd04043 C2_Munc13_fungal C2 do 59.9 37 0.0008 27.5 6.4 57 35-104 64-122 (126)
16 cd08678 C2_C21orf25-like C2 do 58.8 54 0.0012 26.9 7.2 61 36-106 59-123 (126)
17 cd04036 C2_cPLA2 C2 domain pre 58.0 45 0.00098 26.9 6.6 55 36-103 64-118 (119)
18 cd08391 C2A_C2C_Synaptotagmin_ 55.6 52 0.0011 26.1 6.5 54 35-101 67-120 (121)
19 cd04014 C2_PKC_epsilon C2 doma 55.2 66 0.0014 26.5 7.2 56 36-104 74-130 (132)
20 cd04033 C2_NEDD4_NEDD4L C2 dom 49.4 63 0.0014 26.4 6.2 62 36-102 67-132 (133)
21 cd04013 C2_SynGAP_like C2 doma 48.8 55 0.0012 29.1 6.1 61 36-103 67-139 (146)
22 cd08376 C2B_MCTP_PRT C2 domain 45.9 1.1E+02 0.0024 24.4 6.9 54 35-101 60-113 (116)
23 cd04054 C2A_Rasal1_RasA4 C2 do 44.5 95 0.0021 25.4 6.5 59 36-102 61-121 (121)
24 cd08393 C2A_SLP-1_2 C2 domain 43.3 1.1E+02 0.0024 25.4 6.8 51 20-85 73-124 (125)
25 cd04024 C2A_Synaptotagmin-like 42.7 85 0.0018 25.2 5.9 61 35-101 63-127 (128)
26 PF00055 Laminin_N: Laminin N- 41.5 17 0.00037 34.6 1.9 60 216-286 110-176 (237)
27 cd08688 C2_KIAA0528-like C2 do 40.5 67 0.0014 25.8 4.9 55 20-85 53-107 (110)
28 cd04025 C2B_RasA1_RasA4 C2 dom 40.3 1.2E+02 0.0026 24.5 6.4 57 36-101 61-123 (123)
29 cd08682 C2_Rab11-FIP_classI C2 40.2 1.3E+02 0.0027 24.7 6.6 58 35-100 64-125 (126)
30 cd04044 C2A_Tricalbin-like C2 39.8 1.3E+02 0.0029 23.8 6.6 59 35-104 64-124 (124)
31 cd04052 C2B_Tricalbin-like C2 39.7 87 0.0019 25.3 5.5 56 36-103 54-109 (111)
32 cd08521 C2A_SLP C2 domain firs 39.6 1.4E+02 0.0029 23.9 6.6 52 19-85 71-123 (123)
33 COG3287 Uncharacterized conser 38.5 40 0.00087 34.9 4.1 44 73-118 186-232 (379)
34 PF08495 FIST: FIST N domain; 38.1 73 0.0016 27.4 5.1 56 51-116 143-198 (198)
35 cd04017 C2D_Ferlin C2 domain f 37.4 1.1E+02 0.0024 25.5 6.0 65 32-102 67-131 (135)
36 cd04030 C2C_KIAA1228 C2 domain 36.9 1.6E+02 0.0035 23.7 6.7 53 20-85 73-126 (127)
37 cd04011 C2B_Ferlin C2 domain s 36.7 61 0.0013 25.9 4.2 45 36-86 65-109 (111)
38 cd08390 C2A_Synaptotagmin-15-1 34.0 1.9E+02 0.004 23.2 6.6 50 21-85 71-121 (123)
39 cd08381 C2B_PI3K_class_II C2 d 33.5 1.1E+02 0.0023 25.5 5.3 41 36-86 81-122 (122)
40 cd04029 C2A_SLP-4_5 C2 domain 32.3 2E+02 0.0043 24.0 6.6 51 20-85 73-124 (125)
41 cd00030 C2 C2 domain. The C2 d 29.8 87 0.0019 22.1 3.6 29 35-68 60-88 (102)
42 cd00276 C2B_Synaptotagmin C2 d 29.6 1.5E+02 0.0032 23.9 5.4 62 20-97 71-132 (134)
43 TIGR02705 nudix_YtkD nucleosid 27.5 50 0.0011 29.8 2.5 53 184-239 2-55 (156)
44 cd08408 C2B_Synaptotagmin-14_1 27.4 89 0.0019 26.8 3.9 64 19-97 72-135 (138)
45 cd08409 C2B_Synaptotagmin-15 C 27.2 1.3E+02 0.0029 25.4 4.8 65 18-97 69-134 (137)
46 cd08403 C2B_Synaptotagmin-3-5- 27.0 1.1E+02 0.0024 25.3 4.3 61 21-97 72-132 (134)
47 cd08681 C2_fungal_Inn1p-like C 26.5 2.1E+02 0.0046 22.8 5.7 55 35-101 62-117 (118)
48 PF11445 DUF2894: Protein of u 24.9 17 0.00036 34.6 -1.0 17 238-254 1-19 (200)
49 cd08387 C2A_Synaptotagmin-8 C2 24.8 3.1E+02 0.0068 22.1 6.5 51 20-85 71-122 (124)
50 cd05749 Ig2_Tyro3_like Second 24.0 3.2E+02 0.0069 21.4 6.1 48 92-139 14-67 (81)
51 PF13046 DUF3906: Protein of u 23.4 73 0.0016 25.8 2.4 20 252-272 4-23 (64)
52 PF00609 DAGK_acc: Diacylglyce 23.3 77 0.0017 27.9 2.8 21 93-116 141-161 (161)
53 cd05867 Ig4_L1-CAM_like Fourth 23.0 1.2E+02 0.0026 22.5 3.5 25 93-117 3-27 (76)
54 cd08379 C2D_MCTP_PRT_plant C2 23.0 2.8E+02 0.0062 23.8 6.1 59 36-98 63-125 (126)
55 PF11205 DUF2987: Protein of u 22.8 1.5E+02 0.0033 26.8 4.6 82 18-105 3-104 (148)
56 TIGR02011 IscA iron-sulfur clu 22.7 1.3E+02 0.0029 24.7 4.0 31 97-127 23-57 (105)
57 PF00408 PGM_PMM_IV: Phosphogl 22.6 50 0.0011 25.3 1.3 12 217-228 35-46 (73)
58 PF10537 WAC_Acf1_DNA_bd: ATP- 22.3 54 0.0012 27.9 1.6 15 129-143 26-40 (102)
59 smart00136 LamNT Laminin N-ter 22.1 59 0.0013 31.2 2.0 23 215-239 111-133 (238)
60 cd05728 Ig4_Contactin-2-like F 21.6 2.4E+02 0.0052 21.5 4.9 28 92-119 15-42 (85)
61 cd08377 C2C_MCTP_PRT C2 domain 20.9 4.3E+02 0.0093 20.9 6.7 55 36-101 61-117 (119)
62 PF15422 DUF4626: Domain of un 20.2 62 0.0013 29.2 1.6 23 201-223 70-92 (138)
63 TIGR03835 termin_org_DnaJ term 20.1 7E+02 0.015 29.0 9.8 87 13-108 653-741 (871)
64 cd05745 Ig3_Peroxidasin Third 20.0 1.5E+02 0.0033 21.8 3.5 26 92-117 3-28 (74)
No 1
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=100.00 E-value=3.8e-183 Score=1340.30 Aligned_cols=356 Identities=66% Similarity=1.118 Sum_probs=331.6
Q ss_pred CCCCCCCCCCCCCCCCcceeEecCHHHHHhhhCCC------ceEEEEEEecCCCCcccc-cCceeeeEEEEEcccCccCC
Q 017474 1 MPLCTSQNDAPPESSTSALGFHLDAASLRRLSNKP------ITLRVSVYAGRMGSTCGV-SSGKLLGRLNVIIDLAGADS 73 (371)
Q Consensus 1 vPL~~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~------~~L~v~Vy~Gr~G~~CGv-~~~kllG~v~v~ldl~~ae~ 73 (371)
|||+++++...||++++||+|||||+||++|++|+ ++|||+||+||+|++||| +++||||+|+|+|||+|+|+
T Consensus 54 vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl~~ae~ 133 (460)
T PF06219_consen 54 VPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDLKWAEG 133 (460)
T ss_pred eeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccccceEEEEEEEEeccccccC
Confidence 79998776777899999999999999999999997 899999999999999999 99999999999999999999
Q ss_pred cceEEeeceeecCCCC----CCCCceEEEEEeecCCCceEEEeCCccccCceEEEeecCcccceEEEEeccCCCC-----
Q 017474 74 KSIVFRNGWLKLGREP----DKPSARIHLTVRSEPDPRFVFQFGGEPECSPVVFQIQGNIRQPVFSCKFSADRNS----- 144 (371)
Q Consensus 74 kp~v~hnGWi~iGk~~----~~~~aelHl~Vr~EpDPRyVFQFdgepecsPqV~QvqG~~rQPvFtCKFs~dr~~----- 144 (371)
||++||||||+|||++ ++++|||||+||+|||||||||||||||||||||||||||||||||||||+|++.
T Consensus 134 kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpDPRfVFQFdgepecSPQV~QiqG~~rQPvFsCKFs~~~~~~~~~~ 213 (460)
T PF06219_consen 134 KPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPDPRFVFQFDGEPECSPQVFQIQGNIRQPVFSCKFSRDRNSQRDPL 213 (460)
T ss_pred CeeEEEccceecCCCCCCCCCCCcceEEEEEeccCCCeeEEEcCCccccCcEEEEecCccccceeEEEEEecccCCcccc
Confidence 9999999999999953 3479999999999999999999999999999999999999999999999987776
Q ss_pred CcccCCCCccCCCCCCCcc-ccccccccccccccccceEEEEecCCCChhhhcccccCCcCCCCCCcccccCCceEEEEe
Q 017474 145 RSRCLPSDFTNNNGSSRGW-MRTFSGDRERSGRERKGWMIMIYDLSGSPVAAASMITPFVPSPGSDRVSRSNPGAWLILR 223 (371)
Q Consensus 145 r~~~l~~~~~~~~~~~~~w-~~s~~~e~e~~~kERKGW~VtIHDLSGSpVAaAsMvTPFVpSpGsdrVsRSNPGAWLIlr 223 (371)
|+++++++ ...+++| ++++++|+|+++||||||+|||||||||||||||||||||||||||||||||||||||||
T Consensus 214 ~sr~~~~~----~~~sr~W~~s~~~se~e~~~rERKGW~VtIHDLSGSPVAaASMvTPFVPSpGSDrVSRSNPGAWLILR 289 (460)
T PF06219_consen 214 RSRSLSSD----PSSSRSWSSSSFGSERERPRRERKGWSVTIHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGAWLILR 289 (460)
T ss_pred cccccccc----ccccccccccccccccccccccccCcEEEEEcCCCCHHHHhhhcCCccCCCCCCceeccCCCeEEEEe
Confidence 67777766 4556999 778899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCccccchhhhhhccCCCCceeeeEEEeeCCCCCCceeEEeeeeeecccCceEEEecccc--cccccCCCCCC-
Q 017474 224 PNGFSVSSWKPWGRLEAWRERGAVDGLGYKFELVTDSTGPNSRISIAEATLSVKKGGKFCIDSRIT--RESLLNSRSPV- 300 (371)
Q Consensus 224 P~~~~~~sWkPWGRLEAWRErG~~d~lgyRfeLl~d~~~~~~~v~~aes~is~~kGG~F~ID~~~~--~~~~p~~sp~~- 300 (371)
||++ +|||||||||||||||+.|+||||||||+|++ ++++|+|||++||+||||||+||++++ .+++|.++|++
T Consensus 290 P~~~--gsWkPWGRLEAWRErg~~d~lgyrfeL~~~~~-~~~~v~~aes~is~~kGG~F~ID~~~~~~~~~tp~~sp~~s 366 (460)
T PF06219_consen 290 PDGD--GSWKPWGRLEAWRERGGSDGLGYRFELLPDGG-VGGGVLVAESTISSKKGGEFSIDTDRQSTSATTPAPSPRSS 366 (460)
T ss_pred cCCC--CCcccchhhhhhhccCCCCcceeEEEEccCCC-CCceEEEeeeeeccccCceeEEecCcccccccCCCCCCCCC
Confidence 9887 69999999999999999999999999999986 579999999999999999999999764 33344333322
Q ss_pred -------------------------------cceEEeeeeecCCccCCCeEEEeeeeeechhhHHHHHHHHhhhcccchh
Q 017474 301 -------------------------------KGFVMGSTVEGEGKVSKPVVEVGVQHVTCMADAALFIALSAAIDLSMDA 349 (371)
Q Consensus 301 -------------------------------~GFVMs~~V~GEgk~SkP~Vqvgv~HVtC~eDAA~FvALAAAVDLSmdA 349 (371)
+||||||+||||||||||+|||||||||||||||+||||||||||||||
T Consensus 367 ~d~~s~~~~~~~~~~~~~~~~~~df~~~~~~~gfvms~~v~ge~~~skp~v~~~~~hv~c~edaa~f~alaaavdls~da 446 (460)
T PF06219_consen 367 GDFSSLSGSGSGGSPRCSPGSSGDFGLWPGYGGFVMSCRVEGEGKCSKPTVQVGVRHVTCMEDAAAFVALAAAVDLSMDA 446 (460)
T ss_pred ccccccCCccCCCCCCCCCCCccccccccCCCceeEeeecccCCccCCceEEEeeeeeehHHHHHHHHHHHHHhhhhHhh
Confidence 4999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHhhcc
Q 017474 350 CRLFSHKLRKELCH 363 (371)
Q Consensus 350 CrlFs~kLRkEL~~ 363 (371)
||||+|||||||||
T Consensus 447 c~~f~~klrkel~~ 460 (460)
T PF06219_consen 447 CRPFSRKLRKELCH 460 (460)
T ss_pred hhhhHHHHHHHhcC
Confidence 99999999999997
No 2
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=89.75 E-value=2.7 Score=37.59 Aligned_cols=89 Identities=18% Similarity=0.273 Sum_probs=61.4
Q ss_pred ceeEecCHHH--HHhhhCCCceEEEEEEecCCCCcccc-cCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCc
Q 017474 18 ALGFHLDAAS--LRRLSNKPITLRVSVYAGRMGSTCGV-SSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSA 94 (371)
Q Consensus 18 Aa~F~Ld~s~--l~~l~~~~~~L~v~Vy~Gr~G~~CGv-~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~a 94 (371)
...|.++..+ +.|.+.. ..|++.||.-+. + +..++||++.|+|+.--.. +..|+ |+.+=.+.+.-+.
T Consensus 59 ~f~f~I~~~~~~~~R~l~~-~~L~~~V~d~~~-----f~~~D~~iG~~~i~L~~l~~~---~~~~~-~~~L~~~~k~~Gg 128 (155)
T cd08690 59 SFKLNINRKHRSFQRVFKR-HGLKFEVYHKGG-----FLRSDKLLGTAQVKLEPLETK---CEIHE-SVDLMDGRKATGG 128 (155)
T ss_pred eEEEEeccccchhhhhccC-CcEEEEEEeCCC-----cccCCCeeEEEEEEccccccc---CcceE-EEEhhhCCCCcCC
Confidence 4456665442 6665554 479999998432 1 2347999999999742222 24565 9987444455789
Q ss_pred eEEEEEeecCCCceEEEeCCccccCceEEEeec
Q 017474 95 RIHLTVRSEPDPRFVFQFGGEPECSPVVFQIQG 127 (371)
Q Consensus 95 elHl~Vr~EpDPRyVFQFdgepecsPqV~QvqG 127 (371)
.||+.||+. ||..+-||.|++-
T Consensus 129 ~l~v~ir~r-----------~p~~~~~~~~~~~ 150 (155)
T cd08690 129 KLEVKVRLR-----------EPLTGKQLEEITE 150 (155)
T ss_pred EEEEEEEec-----------CCCccceeeeeee
Confidence 999999984 7889999988864
No 3
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=80.99 E-value=6.6 Score=34.26 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=39.8
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCC--------CCCCceEEEEEeec
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREP--------DKPSARIHLTVRSE 103 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~--------~~~~aelHl~Vr~E 103 (371)
..|.|.||.-.. +....+||++.|+|+--.....+-...+.|..+-... .+.+.+|||.+.+.
T Consensus 62 ~~l~v~V~d~~~-----~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~ 132 (150)
T cd04019 62 DHLILSVEDRVG-----PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD 132 (150)
T ss_pred CeEEEEEEEecC-----CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence 478888887432 1244799999999962111112234478999985422 23568999987544
No 4
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=78.55 E-value=11 Score=32.15 Aligned_cols=58 Identities=10% Similarity=0.268 Sum_probs=40.4
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCC-CCCCCCceEEEEEe
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGR-EPDKPSARIHLTVR 101 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk-~~~~~~aelHl~Vr 101 (371)
..|.|.||.-.. +....+||.++|+|...-..+.+ -+.|..|-+ .++...-+|||..+
T Consensus 62 ~~l~~~V~d~d~-----~~~dd~iG~~~i~l~~~~~~g~~---~~~W~~L~~~~~~~~~g~i~l~l~ 120 (121)
T cd04016 62 DSIYIEIFDERA-----FTMDERIAWTHITIPESVFNGET---LDDWYSLSGKQGEDKEGMINLVFS 120 (121)
T ss_pred cEEEEEEEeCCC-----CcCCceEEEEEEECchhccCCCC---ccccEeCcCccCCCCceEEEEEEe
Confidence 479999998654 22446999999999633344543 499999954 33345679999864
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=78.32 E-value=13 Score=30.23 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=40.5
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCC-CCCCCCceEEEEEeecC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGR-EPDKPSARIHLTVRSEP 104 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk-~~~~~~aelHl~Vr~Ep 104 (371)
..|+|.||.-... .....||++.++|. +...+++ +..|+.|-. .+.+...+|||.|+.-|
T Consensus 61 ~~l~~~v~D~d~~-----~~~~~iG~~~~~l~-~l~~~~~---~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 61 QPLYIKVFDYDRG-----LTDDFMGSAFVDLS-TLELNKP---TEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CeEEEEEEeCCCC-----CCCcceEEEEEEHH-HcCCCCC---eEEEEECCCCCCccCceEEEEEEEECC
Confidence 5799999985442 23468999999996 2222333 556888842 22345779999998765
No 6
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=76.47 E-value=15 Score=30.56 Aligned_cols=61 Identities=10% Similarity=0.193 Sum_probs=41.6
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCC---CCCCceEEEEEeecCC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREP---DKPSARIHLTVRSEPD 105 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~---~~~~aelHl~Vr~EpD 105 (371)
..|.|.||..... .....||+++++|.- -..+.. ...|..+-... .+..-+|||.++..+|
T Consensus 62 ~~l~v~v~d~~~~-----~~d~~iG~v~i~l~~-l~~~~~---~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 62 NSFTISLSNKAKR-----SKDSEIAEVTVQLSK-LQNGQE---TDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CEEEEEEEECCCC-----CCCCeEEEEEEEHhH-ccCCCc---ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 3678899987553 344689999999872 122221 47899996532 2355799999987665
No 7
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=76.37 E-value=16 Score=30.12 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=40.0
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeec----CCCCCCCCceEEEEEeecCCC
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKL----GREPDKPSARIHLTVRSEPDP 106 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~i----Gk~~~~~~aelHl~Vr~EpDP 106 (371)
...|+|.||.-++. + ...||.++++++.. .... - -|+.+ .+..++..-+|++.|.+.+||
T Consensus 62 ~~~l~i~V~d~~~~-----~-d~~lG~~~~~l~~~-~~~~---~--~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~ 125 (126)
T cd04046 62 RSPIKIQVWNSNLL-----C-DEFLGQATLSADPN-DSQT---L--RTLPLRKRGRDAAGEVPGTISVKVTSSDDL 125 (126)
T ss_pred CCEEEEEEEECCCC-----C-CCceEEEEEecccC-CCcC---c--eEEEcccCCCCCCCCCCCEEEEEEEEcccc
Confidence 45899999985432 2 36899999999732 1111 1 23333 223445677999999999998
No 8
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=73.97 E-value=12 Score=30.74 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=39.4
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCC--CCCCceEEEEEee
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREP--DKPSARIHLTVRS 102 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~--~~~~aelHl~Vr~ 102 (371)
..|+|.||.-.+ .+ +...+||+++|+|+---.++. .+..|..|.+.+ .+++.||||.+-+
T Consensus 64 ~~l~~~V~d~~~---~~-~~d~~lG~v~i~l~~l~~~~~---~~~~w~~L~~~~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 64 LVLEVYVYNDRR---SG-RRRSFLGRVRISGTSFVPPSE---AVVQRYPLEKRGLFSRVRGEIGLKVYI 125 (127)
T ss_pred CeEEEEEeeCCC---Cc-CCCCeeeEEEEcHHHcCCCCC---ccceEeEeeeCCCCCCccEEEEEEEEE
Confidence 579999998322 11 245699999999962112222 357899997632 2367799998754
No 9
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=72.63 E-value=16 Score=29.62 Aligned_cols=70 Identities=29% Similarity=0.438 Sum_probs=44.6
Q ss_pred eEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcc-c-CccCCcceEEeeceeecCCCCCCCCceEE
Q 017474 20 GFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-L-AGADSKSIVFRNGWLKLGREPDKPSARIH 97 (371)
Q Consensus 20 ~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l-~~ae~kp~v~hnGWi~iGk~~~~~~aelH 97 (371)
.|++.+..| ......|.|.||.-++. +..++||.+.++|. + .....+. .++-.|..+-+..+++..+||
T Consensus 54 ~f~v~~~~~---~~~~~~l~~~v~d~~~~-----~~~~~lG~~~i~l~~l~~~~~~~~-~~~~~~~~l~~~~g~~~G~~~ 124 (125)
T cd04051 54 RFPLDERLL---QQGRLALTIEVYCERPS-----LGDKLIGEVRVPLKDLLDGASPAG-ELRFLSYQLRRPSGKPQGVLN 124 (125)
T ss_pred EEEcChHhc---ccCccEEEEEEEECCCC-----CCCCcEEEEEEEHHHhhcccCCCC-cceeEEEEeECCCCCcCeEEe
Confidence 355555544 22246899999986542 24569999999995 3 2222111 357789888665556777888
Q ss_pred E
Q 017474 98 L 98 (371)
Q Consensus 98 l 98 (371)
+
T Consensus 125 ~ 125 (125)
T cd04051 125 F 125 (125)
T ss_pred C
Confidence 5
No 10
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=68.14 E-value=25 Score=30.76 Aligned_cols=56 Identities=21% Similarity=0.468 Sum_probs=37.7
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCC-C--CCCCCceEEEEEe
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGR-E--PDKPSARIHLTVR 101 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk-~--~~~~~aelHl~Vr 101 (371)
..|+|.||.-..- +. .+||++.++|+-- ..+.+ .+.|+.|=. . ..+.+++|||.++
T Consensus 98 ~~l~~~V~d~d~~-----~~-~~IG~~~i~l~~l-~~g~~---~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 98 SHVEFTVKDNDVV-----GA-QLIGRAYIPVEDL-LSGEP---VEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred CEEEEEEEeCCCc-----CC-cEEEEEEEEhHHc-cCCCC---cceEEECcCCCCCCCCCCCEEEEEEE
Confidence 4788999986532 23 5999999999731 12322 478999833 1 2236789999987
No 11
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=64.61 E-value=31 Score=28.64 Aligned_cols=58 Identities=14% Similarity=0.307 Sum_probs=38.8
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCC--CCCCCceEEEEEee
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGRE--PDKPSARIHLTVRS 102 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~--~~~~~aelHl~Vr~ 102 (371)
..|.|.||....- +...+||++.++|+-- ..+.. ..+|..|-.. .++...+|||.+|.
T Consensus 62 ~~l~~~v~d~~~~-----~~~~~iG~~~i~l~~l-~~~~~---~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 62 RHLSFYIYDRDVL-----RRDSVIGKVAIKKEDL-HKYYG---KDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CEEEEEEEECCCC-----CCCceEEEEEEEHHHc-cCCCC---cEeeEEEEccCCCCcccEEEEEEEEC
Confidence 4788889987642 2335899999998621 11221 4799999542 22356799999874
No 12
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=63.07 E-value=33 Score=28.48 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=39.6
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCc-ceEEeeceeecCCC-CCCCCceEEEEEe
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSK-SIVFRNGWLKLGRE-PDKPSARIHLTVR 101 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~k-p~v~hnGWi~iGk~-~~~~~aelHl~Vr 101 (371)
...|++.||.=.+. ...+||+++++|+---.... .-..++.|..|-.. +.+..-||||.+.
T Consensus 56 ~~~L~~~v~d~d~~------~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~ 118 (121)
T cd08378 56 GSTLEVSVWDKDKA------KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVW 118 (121)
T ss_pred CCEEEEEEEeCCCC------cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEE
Confidence 46899999985432 34589999999973211111 12237899999552 2245679998875
No 13
>PF08122 NDUF_B12: NADH-ubiquinone oxidoreductase B12 subunit family; InterPro: IPR012576 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of the B12 subunit of NADH:ubiquinone oxidoreductase proteins. The function of this subunit is unclear [].; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=60.40 E-value=3 Score=32.14 Aligned_cols=14 Identities=50% Similarity=1.082 Sum_probs=12.0
Q ss_pred cccchhhhhhccCC
Q 017474 233 KPWGRLEAWRERGA 246 (371)
Q Consensus 233 kPWGRLEAWRErG~ 246 (371)
.||.|-||||-.+.
T Consensus 3 DPW~RneaWRy~~~ 16 (57)
T PF08122_consen 3 DPWARNEAWRYHPQ 16 (57)
T ss_pred ChHhhhHHHhCCcc
Confidence 49999999999664
No 14
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=60.22 E-value=68 Score=26.21 Aligned_cols=63 Identities=19% Similarity=0.141 Sum_probs=40.5
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCC-CCCCCCceEEEEEe-ecCCC
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGR-EPDKPSARIHLTVR-SEPDP 106 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk-~~~~~~aelHl~Vr-~EpDP 106 (371)
.-.|+|.||.=++. ....+||.+.++|+---... -...|..|=. +++..+.+|||.+. .+||.
T Consensus 56 ~~~l~~~v~d~~~~-----~~d~~iG~~~~~l~~l~~~~----~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 56 DESLEIVVKDYEKV-----GRNRLIGSATVSLQDLVSEG----LLEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred CCEEEEEEEECCCC-----CCCceEEEEEEEhhHcccCC----ceEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 45789999984432 23469999999996211111 2567888843 23334689999998 55554
No 15
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=59.94 E-value=37 Score=27.46 Aligned_cols=57 Identities=26% Similarity=0.415 Sum_probs=38.7
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCcc-C-CcceEEeeceeecCCCCCCCCceEEEEEeecC
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGA-D-SKSIVFRNGWLKLGREPDKPSARIHLTVRSEP 104 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~a-e-~kp~v~hnGWi~iGk~~~~~~aelHl~Vr~Ep 104 (371)
...|+|.||..... ....+||++.++|+.... . +.. +.-|+.+-. ..++||.+.+|-
T Consensus 64 ~~~L~i~v~d~d~~-----~~~~~iG~~~i~l~~~~~~~~~~~---~~~w~~l~~-----~g~i~l~~~~~~ 122 (126)
T cd04043 64 PLWISATVWDRSFV-----GKHDLCGRASLKLDPKRFGDDGLP---REIWLDLDT-----QGRLLLRVSMEG 122 (126)
T ss_pred CCEEEEEEEECCCC-----CCCceEEEEEEecCHHHcCCCCCC---ceEEEEcCC-----CCeEEEEEEEee
Confidence 35799999986542 234589999999974222 1 222 667999963 348999987763
No 16
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=58.76 E-value=54 Score=26.91 Aligned_cols=61 Identities=23% Similarity=0.141 Sum_probs=41.4
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEccc-CccCCcceEEeeceeecCCC---CCCCCceEEEEEeecCCC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDL-AGADSKSIVFRNGWLKLGRE---PDKPSARIHLTVRSEPDP 106 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl-~~ae~kp~v~hnGWi~iGk~---~~~~~aelHl~Vr~EpDP 106 (371)
..|.|.||.-... +..++||++.++|+- ..... ...|..+-.. ..+...+||+.++.-+++
T Consensus 59 ~~l~~~v~d~~~~-----~~~~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 59 KELLFEVYDNGKK-----SDSKFLGLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CEEEEEEEECCCC-----CCCceEEEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 5799999975542 245799999999973 32222 1468888532 234678999999876665
No 17
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=58.03 E-value=45 Score=26.94 Aligned_cols=55 Identities=11% Similarity=-0.003 Sum_probs=38.7
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEEEEEeec
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIHLTVRSE 103 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr~E 103 (371)
..|+|.||.-.+- ...+||++.++|+- -..+. -+..|+.+.+. +..+||+.+.+|
T Consensus 64 ~~l~v~v~d~d~~------~~~~iG~~~~~l~~-l~~g~---~~~~~~~L~~~---~~g~l~~~~~~~ 118 (119)
T cd04036 64 NVLELTVMDEDYV------MDDHLGTVLFDVSK-LKLGE---KVRVTFSLNPQ---GKEELEVEFLLE 118 (119)
T ss_pred CEEEEEEEECCCC------CCcccEEEEEEHHH-CCCCC---cEEEEEECCCC---CCceEEEEEEee
Confidence 4699999995431 33589999999972 12222 37789998642 356999998887
No 18
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=55.59 E-value=52 Score=26.06 Aligned_cols=54 Identities=24% Similarity=0.474 Sum_probs=36.3
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEEEEEe
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIHLTVR 101 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr 101 (371)
...|+|.||.-... ...+||++.++|+---..+ .++.|+.+=.. ...+|||.++
T Consensus 67 ~~~l~i~v~d~~~~------~~~~iG~~~i~l~~l~~~~----~~~~w~~L~~~---~~G~~~~~~~ 120 (121)
T cd08391 67 GQELEIELFDEDPD------KDDFLGRLSIDLGSVEKKG----FIDEWLPLEDV---KSGRLHLKLE 120 (121)
T ss_pred CCEEEEEEEecCCC------CCCcEEEEEEEHHHhcccC----ccceEEECcCC---CCceEEEEEe
Confidence 35899999986542 3358999999996322222 26899998421 3468999864
No 19
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=55.16 E-value=66 Score=26.53 Aligned_cols=56 Identities=16% Similarity=0.402 Sum_probs=38.6
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceeecCCCCCCCCceEEEEEeecC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLKLGREPDKPSARIHLTVRSEP 104 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr~Ep 104 (371)
..|.|.||.-.. +....+||++.|+|+ +....+.. +..|+.+- +..+|||.+..+.
T Consensus 74 ~~l~~~v~d~~~-----~~~~~~iG~~~i~l~~l~~~~~~~---~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 74 RNLELTVFHDAA-----IGPDDFVANCTISFEDLIQRGSGS---FDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred CEEEEEEEeCCC-----CCCCceEEEEEEEhHHhcccCCCc---ccEEEEcc-----CCcEEEEEEEEec
Confidence 578889987543 224468999999997 33321221 58899985 3459999998764
No 20
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=49.41 E-value=63 Score=26.38 Aligned_cols=62 Identities=11% Similarity=0.114 Sum_probs=40.2
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEccc-Ccc-CCcceEEeeceeecCCC--CCCCCceEEEEEee
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDL-AGA-DSKSIVFRNGWLKLGRE--PDKPSARIHLTVRS 102 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl-~~a-e~kp~v~hnGWi~iGk~--~~~~~aelHl~Vr~ 102 (371)
..|.|.||.-..- ....+||++.++++- ... ...-...|..|..+-+. .++...||||.|..
T Consensus 67 ~~l~~~v~d~~~~-----~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 67 HRLLFEVFDENRL-----TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CEEEEEEEECCCC-----CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 4688999975431 233689999999862 221 11114568889988542 23467799998863
No 21
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=48.84 E-value=55 Score=29.14 Aligned_cols=61 Identities=16% Similarity=0.372 Sum_probs=38.3
Q ss_pred ceEEEEEEec--CCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCC-C-C--------CCCCceEEEEEeec
Q 017474 36 ITLRVSVYAG--RMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGR-E-P--------DKPSARIHLTVRSE 103 (371)
Q Consensus 36 ~~L~v~Vy~G--r~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk-~-~--------~~~~aelHl~Vr~E 103 (371)
..|.|.||.- ..+.. ....+||+|+||++-=. .+ ....+|..|=. . + .+++++||+.+|..
T Consensus 67 ~~l~v~v~k~~~~~~~~---~~~~~IG~V~Ip~~~l~-~~---~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~ 139 (146)
T cd04013 67 SVITVNLYRESDKKKKK---DKSQLIGTVNIPVTDVS-SR---QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQ 139 (146)
T ss_pred cEEEEEEEEccCccccc---cCCcEEEEEEEEHHHhc-CC---CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEE
Confidence 5688899842 22110 13359999999997321 12 33689999833 1 1 34678999998854
No 22
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=45.94 E-value=1.1e+02 Score=24.37 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=36.7
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEEEEEe
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIHLTVR 101 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr 101 (371)
...|+|.||.-+.- ....+||++.++|+- -..++ -|.-|..+... +.+|||.+.
T Consensus 60 ~~~l~v~v~d~~~~-----~~~~~iG~~~~~l~~-l~~~~---~~~~w~~L~~~----~G~~~~~~~ 113 (116)
T cd08376 60 SQILEIEVWDKDTG-----KKDEFIGRCEIDLSA-LPREQ---THSLELELEDG----EGSLLLLLT 113 (116)
T ss_pred CCEEEEEEEECCCC-----CCCCeEEEEEEeHHH-CCCCC---ceEEEEEccCC----CcEEEEEEE
Confidence 36899999986541 234689999999862 11222 26889999643 358888765
No 23
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=44.53 E-value=95 Score=25.44 Aligned_cols=59 Identities=19% Similarity=0.429 Sum_probs=37.3
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCC--CCCCCCceEEEEEee
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGR--EPDKPSARIHLTVRS 102 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk--~~~~~~aelHl~Vr~ 102 (371)
..|+|.||.... +....+||++.++++.--..++. ...|+.+=. ..++..-++||.|++
T Consensus 61 ~~l~v~v~d~~~-----~~~d~~iG~~~~~~~~~~~~~~~---~~~W~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd04054 61 HTVSFYVLDEDT-----LSRDDVIGKVSLTREVISAHPRG---IDGWMNLTEVDPDEEVQGEIHLELSV 121 (121)
T ss_pred CEEEEEEEECCC-----CCCCCEEEEEEEcHHHhccCCCC---CCcEEECeeeCCCCccccEEEEEEEC
Confidence 478888888653 12346899999998632222221 468999822 122245699999874
No 24
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=43.27 E-value=1.1e+02 Score=25.36 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=32.6
Q ss_pred eEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceeec
Q 017474 20 GFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLKL 85 (371)
Q Consensus 20 ~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i 85 (371)
.|.++..+| ....|.|.||.-.+. +...+||.+.++|. ++..+. +..|..+
T Consensus 73 ~f~v~~~~l-----~~~~L~~~V~d~~~~-----~~~~~iG~~~i~L~~~~~~~~-----~~~W~~L 124 (125)
T cd08393 73 RYKVEREEL-----PTRVLNLSVWHRDSL-----GRNSFLGEVEVDLGSWDWSNT-----QPTWYPL 124 (125)
T ss_pred EEECCHHHh-----CCCEEEEEEEeCCCC-----CCCcEeEEEEEecCccccCCC-----CcceEEC
Confidence 366666665 235899999985432 34468999999995 343322 4557653
No 25
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=42.74 E-value=85 Score=25.18 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=37.6
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCC----CCCCCceEEEEEe
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGRE----PDKPSARIHLTVR 101 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~----~~~~~aelHl~Vr 101 (371)
...|+|.||....- ....+||+++++|+---..+. --.+..|+.+=.. .....-+|||.+.
T Consensus 63 ~~~l~i~v~d~~~~-----~~~~~lG~~~i~l~~~~~~~~-~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 63 NQLLKLILWDKDRF-----AGKDYLGEFDIALEEVFADGK-TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred CCEEEEEEEECCCC-----CCCCcceEEEEEHHHhhcccc-cCccceeEEccCcccCccccccceEEEEEE
Confidence 36899999986542 233589999999963211111 1135789988321 1235679998763
No 26
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=41.53 E-value=17 Score=34.62 Aligned_cols=60 Identities=23% Similarity=0.554 Sum_probs=33.7
Q ss_pred CceEEEEeeCCCCCCCccccchhhhhhccCCCCceee-eEEEeeCCCC-----CCceeEEee-eeeecccCceEEEec
Q 017474 216 PGAWLILRPNGFSVSSWKPWGRLEAWRERGAVDGLGY-KFELVTDSTG-----PNSRISIAE-ATLSVKKGGKFCIDS 286 (371)
Q Consensus 216 PGAWLIlrP~~~~~~sWkPWGRLEAWRErG~~d~lgy-RfeLl~d~~~-----~~~~v~~ae-s~is~~kGG~F~ID~ 286 (371)
|.+|+|-|=.+. |+|+||--.- .| |+ +|.+.+.+.. ....+...+ +.+....||+....+
T Consensus 110 P~~miierS~D~--gtW~p~qYfA-------~~--C~~~f~~~~~~~~~~~~~~~~v~Ct~~yS~~~P~~~g~V~f~~ 176 (237)
T PF00055_consen 110 PAAMIIERSSDF--GTWQPWQYFA-------SD--CSRTFGMPPNGPPPKFANPDEVICTSRYSDIEPLTGGEVIFSL 176 (237)
T ss_dssp -SEEEEEEESST--TSEEEEEEEE-------SS--HHHHCS--BTTGGG-STSTT---EESTTTTSSSTSTTEEEEES
T ss_pred CCeEEEEEccCC--CceeEeHHhh-------cC--ChhhcCCcccccccccCCCCcCeecCcCCCCcCccccceeeee
Confidence 899999997555 5999986542 12 33 3555443211 123455544 556677888887765
No 27
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=40.51 E-value=67 Score=25.84 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=34.6
Q ss_pred eEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeec
Q 017474 20 GFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKL 85 (371)
Q Consensus 20 ~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~i 85 (371)
.|.+...+|. ...|+|.||.-... +...+||++.++|+--.... +-.-.++|..|
T Consensus 53 ~f~i~~~~l~-----~~~l~i~V~d~d~~-----~~~~~iG~~~~~l~~l~~~~-~~~~~~~w~~l 107 (110)
T cd08688 53 RFEVDDEELQ-----DEPLQIRVMDHDTY-----SANDAIGKVYIDLNPLLLKD-SVSQISGWFPI 107 (110)
T ss_pred EEEcChHHcC-----CCeEEEEEEeCCCC-----CCCCceEEEEEeHHHhcccC-CccccCCeEEc
Confidence 4555555541 35899999996542 23468999999997322211 12228999875
No 28
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=40.27 E-value=1.2e+02 Score=24.54 Aligned_cols=57 Identities=26% Similarity=0.465 Sum_probs=36.3
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCC------CCCCCceEEEEEe
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGRE------PDKPSARIHLTVR 101 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~------~~~~~aelHl~Vr 101 (371)
..|.|.||.-.. +....+||.+.++|+-- ..+.. +.+|..+-.. ..+..-+|++.+|
T Consensus 61 ~~l~~~v~d~~~-----~~~~~~iG~~~~~l~~l-~~~~~---~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 61 SPLSVEVWDWDL-----VSKNDFLGKVVFSIQTL-QQAKQ---EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CEEEEEEEECCC-----CCCCcEeEEEEEEHHHc-ccCCC---CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 579999997543 22346899999999621 11111 4789988541 2235568888775
No 29
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=40.17 E-value=1.3e+02 Score=24.66 Aligned_cols=58 Identities=22% Similarity=0.476 Sum_probs=37.6
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEccc-CccCCcceEEeeceeecC-CCC--CCCCceEEEEE
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDL-AGADSKSIVFRNGWLKLG-REP--DKPSARIHLTV 100 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl-~~ae~kp~v~hnGWi~iG-k~~--~~~~aelHl~V 100 (371)
...|.|.||.-.+ ++...+||++.|+|+- ....+.+ ...|..|- +.. ++...||||.+
T Consensus 64 ~~~l~~~v~d~~~-----~~~d~~iG~~~i~l~~l~~~~~~~---~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 64 RATLQLTVMHRNL-----LGLDKFLGQVSIPLNDLDEDKGRR---RTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CCEEEEEEEEccc-----cCCCceeEEEEEEHHHhhccCCCc---ccEEEECcCCCCCCccccceEEEEe
Confidence 3579999998542 2234689999999963 2222333 46899984 322 23568999875
No 30
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=39.76 E-value=1.3e+02 Score=23.82 Aligned_cols=59 Identities=22% Similarity=0.269 Sum_probs=35.6
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeec-eeecCCCCCCCCceEEEEEeecC
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNG-WLKLGREPDKPSARIHLTVRSEP 104 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnG-Wi~iGk~~~~~~aelHl~Vr~Ep 104 (371)
...|+|.||.-... ...++||++.++|+ +..... +.. |..+-+ ++++.-+||+.++.-|
T Consensus 64 ~~~l~~~v~d~~~~-----~~d~~iG~~~~~l~~l~~~~~-----~~~~~~~~~~-~~k~~G~i~~~l~~~p 124 (124)
T cd04044 64 TEPLNLTVYDFNDK-----RKDKLIGTAEFDLSSLLQNPE-----QENLTKNLLR-NGKPVGELNYDLRFFP 124 (124)
T ss_pred CCEEEEEEEecCCC-----CCCceeEEEEEEHHHhccCcc-----ccCcchhhhc-CCccceEEEEEEEeCC
Confidence 35788888875432 24479999999986 332222 122 333332 2335679999987644
No 31
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=39.65 E-value=87 Score=25.28 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=37.1
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEEEEEeec
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIHLTVRSE 103 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr~E 103 (371)
..|+|.||.... + ....||++.++|.---..+ - ....|..+-. ++..+|||.+.--
T Consensus 54 ~~l~i~v~d~~~-----~-~d~~iG~~~v~L~~l~~~~--~-~~~~w~~L~~---~~~G~i~~~~~~~ 109 (111)
T cd04052 54 SRVTVVVKDDRD-----R-HDPVLGSVSISLNDLIDAT--S-VGQQWFPLSG---NGQGRIRISALWK 109 (111)
T ss_pred CEEEEEEEECCC-----C-CCCeEEEEEecHHHHHhhh--h-ccceeEECCC---CCCCEEEEEEEEe
Confidence 469999999664 2 3468999999986211111 1 1579999853 2567999987643
No 32
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=39.65 E-value=1.4e+02 Score=23.93 Aligned_cols=52 Identities=23% Similarity=0.443 Sum_probs=34.0
Q ss_pred eeEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceeec
Q 017474 19 LGFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLKL 85 (371)
Q Consensus 19 a~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i 85 (371)
-.|++.+.+|+ ...|+|.||.-... +...+||.+.++|+ +...+. .++|..+
T Consensus 71 f~f~i~~~~l~-----~~~l~i~v~d~~~~-----~~~~~iG~~~i~l~~l~~~~~-----~~~w~~l 123 (123)
T cd08521 71 LKYHISKSQLE-----TRTLQLSVWHHDRF-----GRNTFLGEVEIPLDSWDLDSQ-----QSEWYPL 123 (123)
T ss_pred EEEeCCHHHhC-----CCEEEEEEEeCCCC-----cCCceeeEEEEecccccccCC-----CccEEEC
Confidence 34788887763 35899999985432 34468999999985 322221 3777653
No 33
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=38.54 E-value=40 Score=34.92 Aligned_cols=44 Identities=23% Similarity=0.450 Sum_probs=33.3
Q ss_pred CcceEEeeceeecCCC---CCCCCceEEEEEeecCCCceEEEeCCcccc
Q 017474 73 SKSIVFRNGWLKLGRE---PDKPSARIHLTVRSEPDPRFVFQFGGEPEC 118 (371)
Q Consensus 73 ~kp~v~hnGWi~iGk~---~~~~~aelHl~Vr~EpDPRyVFQFdgepec 118 (371)
+-.++++++|+.+|-. +=.|..+.-.+=|+++| -|.+|||||+.
T Consensus 186 aavi~l~~t~l~f~~~~~~g~~Pt~~~~~VTka~~~--vV~EiDgePA~ 232 (379)
T COG3287 186 AAVILLFGTQLKFGHGFAHGFVPTDKTGVVTKADGD--VVYEIDGEPAA 232 (379)
T ss_pred ceEEEEecceEEeecccccceEEccceEEEEeecCc--EEEEeCCCcHH
Confidence 3457889999999752 22366677777788888 89999999974
No 34
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=38.07 E-value=73 Score=27.38 Aligned_cols=56 Identities=14% Similarity=0.458 Sum_probs=33.7
Q ss_pred ccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEEEEEeecCCCceEEEeCCcc
Q 017474 51 CGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIHLTVRSEPDPRFVFQFGGEP 116 (371)
Q Consensus 51 CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr~EpDPRyVFQFdgep 116 (371)
|-+..++.+-.--|-+-+.....--....+||..+|+. +..-|+ +-|=|+++||+|
T Consensus 143 ~v~~~~~~~~~g~v~~~~~~~l~~~~~~~~g~~p~g~~--------~~VT~a--~~~~I~eld~~P 198 (198)
T PF08495_consen 143 YVFANGQVYSDGAVVVAFSGSLKIDSFVSHGWEPIGKP--------MTVTKA--EGNIIYELDGRP 198 (198)
T ss_pred EEEEeeeeccCcEEEEEEcCCceEEEEEecCeEeCCCC--------EEEEEe--cCCEEEEECCcC
Confidence 33333334333333333333333347788999999862 333444 889999999998
No 35
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=37.37 E-value=1.1e+02 Score=25.50 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=39.2
Q ss_pred hCCCceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEEEEEee
Q 017474 32 SNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIHLTVRS 102 (371)
Q Consensus 32 ~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr~ 102 (371)
...+..|.|.||.=.+- +...+||++.+..........+---+.-|+.|-+.+ ....||+|.+.+
T Consensus 67 ~~~~~~l~v~V~d~d~~-----~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~-~~~Geil~~~~~ 131 (135)
T cd04017 67 AQNPPLVVVELFDQDSV-----GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG-QSAGELLAAFEL 131 (135)
T ss_pred hcCCCEEEEEEEeCcCC-----CCCccceEEEeeeeeecccCCCCCCCceEEEeecCC-CchhheeEEeEE
Confidence 33356899999974431 334699999973211111111233477899996543 356799998765
No 36
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=36.89 E-value=1.6e+02 Score=23.72 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=33.8
Q ss_pred eEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceeec
Q 017474 20 GFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLKL 85 (371)
Q Consensus 20 ~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i 85 (371)
.|.+...+|. ...|+|.||.-.. +..+...+||.+.++|+ +...+. +++|..|
T Consensus 73 ~f~i~~~~l~-----~~~l~i~v~~~~~---~~~~~~~~iG~~~i~l~~l~~~~~-----~~~W~~L 126 (127)
T cd04030 73 EFPVSLEELK-----RRTLDVAVKNSKS---FLSREKKLLGQVLIDLSDLDLSKG-----FTQWYDL 126 (127)
T ss_pred EEecCHHHhc-----CCEEEEEEEECCc---ccCCCCceEEEEEEecccccccCC-----ccceEEC
Confidence 3666666653 2479999998543 11134579999999996 333222 4788765
No 37
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=36.69 E-value=61 Score=25.94 Aligned_cols=45 Identities=24% Similarity=0.446 Sum_probs=29.7
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLG 86 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG 86 (371)
..|+|.||.-++ +...++||.++++|.-=-.. ..--+...|+.+.
T Consensus 65 ~~l~i~V~d~~~-----~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~ 109 (111)
T cd04011 65 KIIKISVYDSRS-----LRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLT 109 (111)
T ss_pred CeEEEEEEcCcc-----cccCCccEEEEECCccccCC-CCCcceEEEEEee
Confidence 489999998543 22457999999999622111 1124778898873
No 38
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=34.00 E-value=1.9e+02 Score=23.22 Aligned_cols=50 Identities=26% Similarity=0.308 Sum_probs=31.7
Q ss_pred EecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceeec
Q 017474 21 FHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLKL 85 (371)
Q Consensus 21 F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i 85 (371)
|++...+++ ...|+|.||.-.. .+...+||.+.++|+ +.... -|+.|+.+
T Consensus 71 f~i~~~~l~-----~~~l~i~v~d~~~-----~~~~~~iG~~~i~L~~l~~~~-----~~~~w~~L 121 (123)
T cd08390 71 FQVSFKELQ-----RRTLRLSVYDVDR-----FSRHCIIGHVLFPLKDLDLVK-----GGVVWRDL 121 (123)
T ss_pred EEcCHHHhc-----ccEEEEEEEECCc-----CCCCcEEEEEEEeccceecCC-----CceEEEeC
Confidence 555555441 2479999998442 234469999999997 33333 24677765
No 39
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=33.54 E-value=1.1e+02 Score=25.46 Aligned_cols=41 Identities=24% Similarity=0.418 Sum_probs=28.0
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceeecC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLKLG 86 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iG 86 (371)
..|+|.||.=... +...+||.+.|+|. +...+. ..+|..||
T Consensus 81 ~~L~~~V~d~d~~-----~~~~~lG~~~i~l~~l~~~~~-----~~~W~~L~ 122 (122)
T cd08381 81 RVLQVSVWSHDSL-----VENEFLGGVCIPLKKLDLSQE-----TEKWYPLG 122 (122)
T ss_pred CEEEEEEEeCCCC-----cCCcEEEEEEEeccccccCCC-----ccceEECc
Confidence 5899999984332 23468999999995 332211 47898886
No 40
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=32.27 E-value=2e+02 Score=23.99 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=32.1
Q ss_pred eEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEccc-CccCCcceEEeeceeec
Q 017474 20 GFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDL-AGADSKSIVFRNGWLKL 85 (371)
Q Consensus 20 ~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl-~~ae~kp~v~hnGWi~i 85 (371)
.|.++..+| ....|+|.||.-.. ++...+||.+.++|+- +-... +.+|+.+
T Consensus 73 ~f~i~~~~l-----~~~~L~~~V~d~~~-----~~~~~~lG~~~i~l~~~~~~~~-----~~~w~~l 124 (125)
T cd04029 73 KYSISHSQL-----ETRTLQLSVWHYDR-----FGRNTFLGEVEIPLDSWNFDSQ-----HEECLPL 124 (125)
T ss_pred EEECCHHHh-----CCCEEEEEEEECCC-----CCCCcEEEEEEEeCCcccccCC-----cccEEEC
Confidence 366666554 22479999997432 2344589999999962 22221 6788764
No 41
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=29.85 E-value=87 Score=22.12 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=22.2
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEccc
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDL 68 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl 68 (371)
...|+|+||....- ...++||++.+++.-
T Consensus 60 ~~~l~i~v~~~~~~-----~~~~~ig~~~~~l~~ 88 (102)
T cd00030 60 SDTLTVEVWDKDRF-----SKDDFLGEVEIPLSE 88 (102)
T ss_pred CCEEEEEEEecCCC-----CCCceeEEEEEeHHH
Confidence 46899999996542 245799999999863
No 42
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=29.62 E-value=1.5e+02 Score=23.89 Aligned_cols=62 Identities=24% Similarity=0.431 Sum_probs=37.9
Q ss_pred eEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEE
Q 017474 20 GFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIH 97 (371)
Q Consensus 20 ~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelH 97 (371)
.|.++..+| ....|+|.||.=... ...++||.++++++- ...+ .+-|..+=+...++-+.-|
T Consensus 71 ~f~i~~~~l-----~~~~l~~~v~d~~~~-----~~~~~lG~~~i~l~~-~~~~-----~~~W~~l~~~~~~~~~~wh 132 (134)
T cd00276 71 SFDVPAEQL-----EEVSLVITVVDKDSV-----GRNEVIGQVVLGPDS-GGEE-----LEHWNEMLASPRKPIARWH 132 (134)
T ss_pred EEECCHHHh-----CCcEEEEEEEecCCC-----CCCceeEEEEECCCC-CCcH-----HHHHHHHHhCCCCceEEee
Confidence 366776655 236899999985432 345799999999985 2221 3667776443233333433
No 43
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=27.48 E-value=50 Score=29.79 Aligned_cols=53 Identities=26% Similarity=0.427 Sum_probs=40.8
Q ss_pred EEecCCCChhhhcccccCCcCCCCCCcccccCCceEEEEeeCCCCCCCcc-ccchhh
Q 017474 184 MIYDLSGSPVAAASMITPFVPSPGSDRVSRSNPGAWLILRPNGFSVSSWK-PWGRLE 239 (371)
Q Consensus 184 tIHDLSGSpVAaAsMvTPFVpSpGsdrVsRSNPGAWLIlrP~~~~~~sWk-PWGRLE 239 (371)
+.+|.-|-+|-+.+=-+||+.-||.--|-=-+.+-||+++-.. ..|. |.|++|
T Consensus 2 ~f~d~~~~~v~l~~~~~~~~~~~~~V~ii~~~~~~~LL~~~~~---~~~elPgG~vE 55 (156)
T TIGR02705 2 KFIDYYGNKVTLAFEKEPFSPNPNHVLVIPRYKDQWLLTEHKR---RGLEFPGGKVE 55 (156)
T ss_pred eeEcCCCCEEEEEEeCCcccCCCCEEEEEEEECCEEEEEEEcC---CcEECCceecC
Confidence 4689999999999999999999997766433556899988653 2354 777776
No 44
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=27.39 E-value=89 Score=26.78 Aligned_cols=64 Identities=20% Similarity=0.429 Sum_probs=41.6
Q ss_pred eeEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEE
Q 017474 19 LGFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIH 97 (371)
Q Consensus 19 a~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelH 97 (371)
-.|.++..+|+ ...|.|.||.-.. ++...+||.+.++++..+.+.. .-|-.+-.....+-++-|
T Consensus 72 F~f~i~~~~l~-----~~~L~~~V~~~~~-----~~~~~~iG~v~l~~~~~~~~~~-----~hW~~~l~~~~~~v~~WH 135 (138)
T cd08408 72 FVFQVALFQLS-----EVTLMFSVYNKRK-----MKRKEMIGWFSLGLNSSGEEEE-----EHWNEMKESKGQQVCRWH 135 (138)
T ss_pred EEEECCHHHhC-----ccEEEEEEEECCC-----CCCCcEEEEEEECCcCCCchHH-----HHHHHHHhCCCCEEeEee
Confidence 45777776653 3589999999654 2455799999998875544332 357777654444555555
No 45
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=27.15 E-value=1.3e+02 Score=25.41 Aligned_cols=65 Identities=25% Similarity=0.352 Sum_probs=40.3
Q ss_pred ceeEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEccc-CccCCcceEEeeceeecCCCCCCCCceE
Q 017474 18 ALGFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDL-AGADSKSIVFRNGWLKLGREPDKPSARI 96 (371)
Q Consensus 18 Aa~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl-~~ae~kp~v~hnGWi~iGk~~~~~~ael 96 (371)
.-.|.+++.+|+ ..+|+|.||.=.. .....+||.+.|..+. ...+. ..-|..+-+...++-++-
T Consensus 69 ~F~f~i~~~~l~-----~~~L~~~V~~~~~-----~~~~~~lG~v~ig~~~~~~~~~-----~~hW~~~~~~p~~~i~~W 133 (137)
T cd08409 69 SFSFKVTSRQLD-----TASLSLSVMQSGG-----VRKSKLLGRVVLGPFMYARGKE-----LEHWNDMLSKPKELIKRW 133 (137)
T ss_pred eEEEECCHHHhC-----ccEEEEEEEeCCC-----CCCcceEEEEEECCcccCCChH-----HHHHHHHHhCCCCceeEE
Confidence 346788887763 2589999997432 3445699999998643 21111 244777765444455665
Q ss_pred E
Q 017474 97 H 97 (371)
Q Consensus 97 H 97 (371)
|
T Consensus 134 H 134 (137)
T cd08409 134 H 134 (137)
T ss_pred E
Confidence 5
No 46
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=26.96 E-value=1.1e+02 Score=25.27 Aligned_cols=61 Identities=25% Similarity=0.420 Sum_probs=39.0
Q ss_pred EecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEE
Q 017474 21 FHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIH 97 (371)
Q Consensus 21 F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelH 97 (371)
|++...+++ ...|+|.||.-++ ++...+||.+.|+++... .+ ...|-.+-.+.+++-.|-|
T Consensus 72 f~i~~~~~~-----~~~l~~~v~d~~~-----~~~~~~IG~~~l~~~~~~-~~-----~~~w~~~~~~~~~~~~~wh 132 (134)
T cd08403 72 FDVPPENVD-----NVSLIIAVVDYDR-----VGHNELIGVCRVGPNADG-QG-----REHWNEMLANPRKPIAQWH 132 (134)
T ss_pred EECCHHHhC-----CCEEEEEEEECCC-----CCCCceeEEEEECCCCCC-ch-----HHHHHHHHHCCCCeeeEee
Confidence 556555442 2579999998553 234579999999987322 22 4688887554444666666
No 47
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=26.47 E-value=2.1e+02 Score=22.78 Aligned_cols=55 Identities=16% Similarity=0.249 Sum_probs=36.0
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEccc-CccCCcceEEeeceeecCCCCCCCCceEEEEEe
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDL-AGADSKSIVFRNGWLKLGREPDKPSARIHLTVR 101 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl-~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr 101 (371)
...|+|.||.-++. + .++||++.++++- .... -+..|..+-.++ +..-+|||.+.
T Consensus 62 ~~~l~i~v~d~~~~---~---~~~iG~~~~~l~~~~~~~-----~~~~w~~L~~~~-~~~G~i~l~l~ 117 (118)
T cd08681 62 KPILKVAVFDDDKR---K---PDLIGDTEVDLSPALKEG-----EFDDWYELTLKG-RYAGEVYLELT 117 (118)
T ss_pred CCEEEEEEEeCCCC---C---CcceEEEEEecHHHhhcC-----CCCCcEEeccCC-cEeeEEEEEEE
Confidence 35799999985431 2 4699999999972 2211 157899885432 24458888763
No 48
>PF11445 DUF2894: Protein of unknown function (DUF2894); InterPro: IPR021549 This is a bacterial family of uncharacterised proteins.
Probab=24.87 E-value=17 Score=34.59 Aligned_cols=17 Identities=47% Similarity=1.122 Sum_probs=12.8
Q ss_pred hhhhhccCC--CCceeeeE
Q 017474 238 LEAWRERGA--VDGLGYKF 254 (371)
Q Consensus 238 LEAWRErG~--~d~lgyRf 254 (371)
|+||||+|. .|-+++||
T Consensus 1 LdawR~~GAdr~DPvRF~~ 19 (200)
T PF11445_consen 1 LDAWRAQGADRFDPVRFRF 19 (200)
T ss_pred ChhHHhcCccccCcHHHHH
Confidence 789999995 46666655
No 49
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=24.80 E-value=3.1e+02 Score=22.15 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=32.5
Q ss_pred eEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceeec
Q 017474 20 GFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLKL 85 (371)
Q Consensus 20 ~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i 85 (371)
.|++...+| +...|+|.||.=.+ +....+||.+.++|+ +...+ -++.|..+
T Consensus 71 ~f~v~~~~l-----~~~~l~i~V~d~~~-----~~~~~~iG~~~i~l~~~~~~~-----~~~~W~~l 122 (124)
T cd08387 71 VFEVPPQEL-----PKRTLEVLLYDFDQ-----FSRDECIGVVELPLAEVDLSE-----KLDLWRKI 122 (124)
T ss_pred EEeCCHHHh-----CCCEEEEEEEECCC-----CCCCceeEEEEEecccccCCC-----CcceEEEC
Confidence 356666554 23579999998432 123468999999995 44333 24668765
No 50
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=24.00 E-value=3.2e+02 Score=21.42 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=37.1
Q ss_pred CCceEEEEEeecCCC-ceEEEeCCccc-----cCceEEEeecCcccceEEEEec
Q 017474 92 PSARIHLTVRSEPDP-RFVFQFGGEPE-----CSPVVFQIQGNIRQPVFSCKFS 139 (371)
Q Consensus 92 ~~aelHl~Vr~EpDP-RyVFQFdgepe-----csPqV~QvqG~~rQPvFtCKFs 139 (371)
..+.|+-.+.-.|.| .+.+..||.|- -++-++.|.+-...=+++|.-+
T Consensus 14 ~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~~d~g~Y~C~A~ 67 (81)
T cd05749 14 TPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGLNETSKFSCEAH 67 (81)
T ss_pred CCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccccCCeEEEEEEE
Confidence 467899999999999 69999999864 2455677777655667888866
No 51
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.42 E-value=73 Score=25.81 Aligned_cols=20 Identities=40% Similarity=0.703 Sum_probs=15.5
Q ss_pred eeEEEeeCCCCCCceeEEeee
Q 017474 252 YKFELVTDSTGPNSRISIAEA 272 (371)
Q Consensus 252 yRfeLl~d~~~~~~~v~~aes 272 (371)
||||+..+. ++...|++||+
T Consensus 4 Yr~Ev~~~~-~~~~viv~Ae~ 23 (64)
T PF13046_consen 4 YRFEVTLEE-GPIPVIVAAEN 23 (64)
T ss_pred EEEEEEecC-CcEEEEEEecC
Confidence 999999854 45678888874
No 52
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=23.27 E-value=77 Score=27.86 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=15.0
Q ss_pred CceEEEEEeecCCCceEEEeCCcc
Q 017474 93 SARIHLTVRSEPDPRFVFQFGGEP 116 (371)
Q Consensus 93 ~aelHl~Vr~EpDPRyVFQFdgep 116 (371)
+.++.++++- | .--||.||||
T Consensus 141 ~~~i~i~~~~--~-~~~~QvDGEp 161 (161)
T PF00609_consen 141 GRPIRIETKE--N-KVPFQVDGEP 161 (161)
T ss_pred CCEEEEEECC--C-ceeEEeCCCC
Confidence 3456666655 3 7889999998
No 53
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=23.01 E-value=1.2e+02 Score=22.49 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=21.6
Q ss_pred CceEEEEEeecCCCceEEEeCCccc
Q 017474 93 SARIHLTVRSEPDPRFVFQFGGEPE 117 (371)
Q Consensus 93 ~aelHl~Vr~EpDPRyVFQFdgepe 117 (371)
.+.|+-.+.-.|.|.+.+.++|+|-
T Consensus 3 ~v~l~C~~~G~P~p~i~W~k~g~~i 27 (76)
T cd05867 3 TARLDCQVEGIPTPNITWSINGAPI 27 (76)
T ss_pred eEEEEEEeeEeCCCeEEEEECCEEC
Confidence 5688888889999999999999864
No 54
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=23.01 E-value=2.8e+02 Score=23.77 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=35.7
Q ss_pred ceEEEEEEecCCCC-cccccCceeeeEEEEEcccCccCCcceEEeeceeecCCC---CCCCCceEEE
Q 017474 36 ITLRVSVYAGRMGS-TCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGRE---PDKPSARIHL 98 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~-~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~---~~~~~aelHl 98 (371)
..|+|.||.-+.-. .=.+....+||+++|+|.---. +. -++.|..|-.. +.+...+||+
T Consensus 63 ~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~-~~---~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 63 TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLED-DR---VYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CEEEEEEEECCCccccccCCCCceEEEEEEEHHHccC-CC---EEeeEEEeEeCCCCCccCCcEEEe
Confidence 47999999965410 0001234689999999863211 21 25789988531 2336778886
No 55
>PF11205 DUF2987: Protein of unknown function (DUF2987); InterPro: IPR021370 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.79 E-value=1.5e+02 Score=26.76 Aligned_cols=82 Identities=15% Similarity=0.238 Sum_probs=51.0
Q ss_pred ceeEecCHH----HHHhhhCC-CceEEEEEEecCC--CCcccccCceee-------------eEEEEEcccCccCCcceE
Q 017474 18 ALGFHLDAA----SLRRLSNK-PITLRVSVYAGRM--GSTCGVSSGKLL-------------GRLNVIIDLAGADSKSIV 77 (371)
Q Consensus 18 Aa~F~Ld~s----~l~~l~~~-~~~L~v~Vy~Gr~--G~~CGv~~~kll-------------G~v~v~ldl~~ae~kp~v 77 (371)
|+-+.|.-+ .|+.+... ...++|+.|--+. |..|.|.++.+. |++.||+|-.+...||+|
T Consensus 3 A~~~~~~Ys~fY~~lK~~~k~~~~~v~~af~~~~~~~~~~C~I~~a~i~te~~~~pL~i~~~~el~lP~d~~Lk~~~a~V 82 (148)
T PF11205_consen 3 AQELSLEYSGFYSRLKQVNKEDYSDVKVAFFLPDAQTGQACQIKKAWIETEKHYEPLTITADGELFLPFDKQLKSANALV 82 (148)
T ss_pred ceeEEeeHHHHHHHHhhhccCCCccEEEEEEEEcCCCCccceEEEEEEEEcCceEEeccCCCCeEeCcchHHHhhcCCeE
Confidence 445555554 44444433 5788999988554 567999666542 678888888888788877
Q ss_pred EeeceeecCCCCCCCCceEEEEEeecCC
Q 017474 78 FRNGWLKLGREPDKPSARIHLTVRSEPD 105 (371)
Q Consensus 78 ~hnGWi~iGk~~~~~~aelHl~Vr~EpD 105 (371)
.-+= .+.. ..-.+++.|++.+.
T Consensus 83 ~v~~---~~~~---~~Cd~smqv~ak~~ 104 (148)
T PF11205_consen 83 NVDL---TPDA---EQCDISMQVMAKEP 104 (148)
T ss_pred EEEc---cCCc---ccccEEEEEEecCC
Confidence 6330 1211 23466666666554
No 56
>TIGR02011 IscA iron-sulfur cluster assembly protein IscA. This clade is limited to the proteobacteria.
Probab=22.68 E-value=1.3e+02 Score=24.71 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=24.8
Q ss_pred EEEEeecC----CCceEEEeCCccccCceEEEeec
Q 017474 97 HLTVRSEP----DPRFVFQFGGEPECSPVVFQIQG 127 (371)
Q Consensus 97 Hl~Vr~Ep----DPRyVFQFdgepecsPqV~QvqG 127 (371)
.|+|.+++ -++|.+.|+.||+-.=+|++.+|
T Consensus 23 ~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g 57 (105)
T TIGR02011 23 GLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKG 57 (105)
T ss_pred eEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCC
Confidence 45555554 78899999999999999999876
No 57
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=22.57 E-value=50 Score=25.29 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=8.9
Q ss_pred ceEEEEeeCCCC
Q 017474 217 GAWLILRPNGFS 228 (371)
Q Consensus 217 GAWLIlrP~~~~ 228 (371)
|.||++||.++.
T Consensus 35 G~~l~vR~SgTE 46 (73)
T PF00408_consen 35 GWRLLVRPSGTE 46 (73)
T ss_dssp EEEEEEEEESSS
T ss_pred ceEEEEECCCCC
Confidence 566669998874
No 58
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=22.26 E-value=54 Score=27.95 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=11.7
Q ss_pred cccceEEEEeccCCC
Q 017474 129 IRQPVFSCKFSADRN 143 (371)
Q Consensus 129 ~rQPvFtCKFs~dr~ 143 (371)
.+|+||||+.++..+
T Consensus 26 y~~~vwtC~~TGk~~ 40 (102)
T PF10537_consen 26 YNQRVWTCEITGKSN 40 (102)
T ss_pred HhCCeeEEecCCCCC
Confidence 689999999875533
No 59
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=22.08 E-value=59 Score=31.24 Aligned_cols=23 Identities=26% Similarity=0.862 Sum_probs=18.1
Q ss_pred CCceEEEEeeCCCCCCCccccchhh
Q 017474 215 NPGAWLILRPNGFSVSSWKPWGRLE 239 (371)
Q Consensus 215 NPGAWLIlrP~~~~~~sWkPWGRLE 239 (371)
.|.+|+|=|.|.. .+|+||.-.-
T Consensus 111 RPa~~i~erSd~G--~tW~p~qyfa 133 (238)
T smart00136 111 RPSLWILERSDFG--KTWQPWQYFS 133 (238)
T ss_pred CCceEEEeecCCC--CCCcEeeeee
Confidence 5789999999543 6899997654
No 60
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=21.61 E-value=2.4e+02 Score=21.49 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCceEEEEEeecCCCceEEEeCCccccC
Q 017474 92 PSARIHLTVRSEPDPRFVFQFGGEPECS 119 (371)
Q Consensus 92 ~~aelHl~Vr~EpDPRyVFQFdgepecs 119 (371)
..+.|+-.|...|.|.+.+.-+|++--+
T Consensus 15 ~~~~l~C~~~g~p~p~v~W~k~g~~~~~ 42 (85)
T cd05728 15 SSLRWECKASGNPRPAYRWLKNGQPLAS 42 (85)
T ss_pred CcEEEEEEeeEeCCCEEEEEECCEECCC
Confidence 4679999999999999999999987543
No 61
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=20.87 E-value=4.3e+02 Score=20.91 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=35.3
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCC--CCCCCceEEEEEe
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGRE--PDKPSARIHLTVR 101 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~--~~~~~aelHl~Vr 101 (371)
..|.|.||.-+. +....+||++.++|+- -..+. ..|..|=.. .++...+|+|.+.
T Consensus 61 ~~l~~~v~d~~~-----~~~~~~iG~~~~~l~~-~~~~~-----~~~~~l~~~~~~~~~~G~i~l~~~ 117 (119)
T cd08377 61 DVLEVTVYDEDK-----DKKPEFLGKVAIPLLS-IKNGE-----RKWYALKDKKLRTRAKGSILLEMD 117 (119)
T ss_pred CEEEEEEEECCC-----CCCCceeeEEEEEHHH-CCCCC-----ceEEECcccCCCCceeeEEEEEEE
Confidence 579999998654 1234689999999852 22232 358887331 2235678888765
No 62
>PF15422 DUF4626: Domain of unknown function (DUF4626)
Probab=20.16 E-value=62 Score=29.23 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=20.9
Q ss_pred CCcCCCCCCcccccCCceEEEEe
Q 017474 201 PFVPSPGSDRVSRSNPGAWLILR 223 (371)
Q Consensus 201 PFVpSpGsdrVsRSNPGAWLIlr 223 (371)
||+-|--...|.|-||-.||.|.
T Consensus 70 ~f~~sr~dGtve~~~pa~~~~~~ 92 (138)
T PF15422_consen 70 PFFISRVDGTVERPNPALWLCLS 92 (138)
T ss_pred cceeeeccceecCCCCceEEEee
Confidence 78888889999999999999986
No 63
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=20.07 E-value=7e+02 Score=28.96 Aligned_cols=87 Identities=10% Similarity=0.195 Sum_probs=48.8
Q ss_pred CCCCcceeEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCcee--eeEEEEEcccCccCCcceEEeeceeecCCCCC
Q 017474 13 ESSTSALGFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKL--LGRLNVIIDLAGADSKSIVFRNGWLKLGREPD 90 (371)
Q Consensus 13 ~~~~~Aa~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kl--lG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~ 90 (371)
+-+++-.-+-|.=+..+...+....++| +.+ ..||-..... -=++.|.|..-+.+|.-++|.+- |....
T Consensus 653 ~~~~~dI~y~l~vtLEeLY~G~tKkIKi---tR~--V~~g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~Ge----GDegp 723 (871)
T TIGR03835 653 DETNVNLVYEEEVPQILFFNNQIKEIKY---TRH--TVDGNTESTTNEAITLEIQLPITSQLNISAIFKGF----GHDFG 723 (871)
T ss_pred cccccceEEecccCHHHHhCCCeEEEEE---EEe--eccCCCcceeeeeEEEEEecCCCCCCCCEEEeccc----cCCCC
Confidence 3456666666666666666776555554 211 1132111111 22566777666667776777632 22111
Q ss_pred CCCceEEEEEeecCCCce
Q 017474 91 KPSARIHLTVRSEPDPRF 108 (371)
Q Consensus 91 ~~~aelHl~Vr~EpDPRy 108 (371)
+....|+++|++.|+|+|
T Consensus 724 gg~GDLyVvIkVKPHp~F 741 (871)
T TIGR03835 724 NGCGDLKVVFKVIPSNFF 741 (871)
T ss_pred CCCCCEEEEEEEcCCCCe
Confidence 112689999999999973
No 64
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=20.03 E-value=1.5e+02 Score=21.83 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=22.1
Q ss_pred CCceEEEEEeecCCCceEEEeCCccc
Q 017474 92 PSARIHLTVRSEPDPRFVFQFGGEPE 117 (371)
Q Consensus 92 ~~aelHl~Vr~EpDPRyVFQFdgepe 117 (371)
..++|+-.+...|.|.|-+..+|++-
T Consensus 3 ~~v~l~C~~~g~P~p~i~W~k~g~~~ 28 (74)
T cd05745 3 QTVDFLCEAQGYPQPVIAWTKGGSQL 28 (74)
T ss_pred CeEEEEeECCEecCCEEEEEECCEEC
Confidence 45788999999999999999999864
Done!