Query 017474
Match_columns 371
No_of_seqs 57 out of 59
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 15:01:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmh_A Myoferlin; beta-sandwic 83.3 4.1 0.00014 32.0 7.3 62 35-106 69-135 (140)
2 1rlw_A Phospholipase A2, CALB 77.2 12 0.0004 28.6 7.9 58 35-105 69-126 (126)
3 3b7y_A E3 ubiquitin-protein li 72.9 18 0.00062 28.7 8.2 64 36-104 86-153 (153)
4 3m7f_B E3 ubiquitin-protein li 72.8 13 0.00043 30.7 7.5 65 36-105 74-142 (176)
5 1gmi_A Protein kinase C, epsil 72.4 13 0.00044 29.3 7.2 56 36-104 77-133 (136)
6 3kwu_A MUNC13-1; calcium bindi 69.9 24 0.00084 27.8 8.4 63 36-104 77-147 (148)
7 1wfj_A Putative elicitor-respo 61.0 5 0.00017 31.3 2.7 62 35-105 70-131 (136)
8 2fk9_A Protein kinase C, ETA t 51.3 22 0.00074 30.1 5.2 55 36-103 99-156 (157)
9 2ep6_A MCTP2 protein; beta san 51.0 22 0.00074 27.7 4.8 57 35-102 72-130 (133)
10 2r83_A Synaptotagmin-1; C2A-C2 41.9 1.6E+02 0.0053 25.5 9.3 63 36-107 85-150 (284)
11 2bwq_A Regulating synaptic mem 38.1 60 0.0021 24.7 5.4 42 36-85 87-128 (129)
12 3f04_A Synaptotagmin-1; C2A, c 36.0 1.3E+02 0.0046 23.3 7.3 52 20-85 89-140 (143)
13 2b3r_A Phosphatidylinositol-4- 35.3 1.6E+02 0.0055 23.0 7.8 54 20-87 76-130 (134)
14 3tbd_A Netrin-G2, laminet-2; l 31.3 22 0.00075 34.6 2.3 23 215-238 128-150 (338)
15 4aqt_A Laminin subunit gamma-1 31.3 21 0.00073 34.7 2.2 23 215-238 125-147 (375)
16 2y38_A Laminin subunit alpha-5 31.2 21 0.0007 35.4 2.1 24 215-239 132-155 (403)
17 4aqs_A Laminin subunit beta-1; 31.0 22 0.00076 34.8 2.3 23 215-238 127-149 (525)
18 4i21_C ERBB receptor feedback 30.8 7.9 0.00027 30.0 -0.7 19 102-129 40-58 (62)
19 3zyj_B Netrin-G1; cell adhesio 30.2 23 0.00079 35.4 2.3 23 215-238 156-178 (426)
20 1rsy_A Synaptotagmin I; calciu 29.9 1.8E+02 0.0061 23.0 7.2 53 20-86 97-149 (152)
21 1v27_A Regulating synaptic mem 29.5 1.6E+02 0.0054 22.6 6.6 44 36-87 90-133 (141)
22 2d8k_A Synaptotagmin VII; exoc 28.0 1.1E+02 0.0039 23.7 5.6 44 35-87 92-135 (141)
23 3l9b_A Otoferlin; C2-domain, b 25.6 73 0.0025 27.7 4.4 60 35-104 79-140 (144)
24 3fdw_A Synaptotagmin-like prot 24.7 57 0.002 25.8 3.3 42 36-87 92-134 (148)
25 3dob_A Heat shock 70 kDa prote 22.5 2.5E+02 0.0086 23.5 7.1 27 36-65 45-71 (152)
26 3dqg_A Heat shock 70 kDa prote 22.5 3E+02 0.01 23.1 7.5 27 36-65 45-71 (151)
No 1
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.26 E-value=4.1 Score=31.96 Aligned_cols=62 Identities=24% Similarity=0.290 Sum_probs=41.9
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceee---c-CCCCCCCCceEEEEEeecCCC
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLK---L-GREPDKPSARIHLTVRSEPDP 106 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~---i-Gk~~~~~~aelHl~Vr~EpDP 106 (371)
...|+|.||.-... ....+||.++|+|. +.... -+..|.. + ++.++....+|||.++..|.|
T Consensus 69 ~~~l~i~V~d~d~~-----~~~~~lG~~~i~l~~l~~~~-----~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 69 SSSLGIIVKDFETI-----GQNKLIGTATVALKDLTGDQ-----SRSLPYKLISLLNEKGQDTGATIDLVIGYDPPS 135 (140)
T ss_dssp TCEEEEEEEETTCS-----SSCCCCEEEEEEGGGTCSSS-----CEEEEEEEEEEECTTCCEEEEEEEEEEEECCCB
T ss_pred CCEEEEEEEECCCC-----CCCceEEEEEEEHHHhccCC-----CceeEEeeeeccCCCCCCCCCEEEEEEEEECCC
Confidence 46899999986542 34468999999996 32222 2456876 4 333333567999999988865
No 2
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=77.19 E-value=12 Score=28.63 Aligned_cols=58 Identities=5% Similarity=0.039 Sum_probs=37.9
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEEEEEeecCC
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIHLTVRSEPD 105 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr~EpD 105 (371)
...|+|.||.-... + ..+||.+.|+|.- -..+ .-|..|+.+-+. ...++|+.+...||
T Consensus 69 ~~~l~i~V~d~d~~-----~-~~~iG~~~i~l~~-l~~~---~~~~~~~~L~~~---~~g~i~~~le~~~~ 126 (126)
T 1rlw_A 69 ENVLEITLMDANYV-----M-DETLGTATFTVSS-MKVG---EKKEVPFIFNQV---TEMVLEMSLEVASS 126 (126)
T ss_dssp CCEEEEEEEECCSS-----C-CEEEEEEEEEGGG-SCTT---CEEEEEEEETTT---EEEEEEEEEECCCC
T ss_pred CCEEEEEEEECCCC-----C-CceeEEEEEEHHH-ccCC---CcEEEEEEcCCC---ceEEEEEEEEeCCC
Confidence 36899999986543 3 4699999999962 1223 256789999642 23456665555454
No 3
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=72.85 E-value=18 Score=28.72 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=41.3
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCc-ceEEeeceeecCCC--CCCCCceEEEEEeecC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSK-SIVFRNGWLKLGRE--PDKPSARIHLTVRSEP 104 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~k-p~v~hnGWi~iGk~--~~~~~aelHl~Vr~Ep 104 (371)
..|+|.||.-.. ++...+||.+.|+|. +...... -.-++..|..|... .++...+|||.+..-|
T Consensus 86 ~~l~~~V~d~d~-----~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 86 HRLLFEVFDENR-----LTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp CEEEEEEEECCS-----SSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred CEEEEEEEECCC-----CcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 589999998543 234579999999996 2222211 02245689988542 2235679999987544
No 4
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=72.79 E-value=13 Score=30.72 Aligned_cols=65 Identities=11% Similarity=0.182 Sum_probs=39.4
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEccc-CccCCc-ceEEeeceeecCCC--CCCCCceEEEEEeecCC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDL-AGADSK-SIVFRNGWLKLGRE--PDKPSARIHLTVRSEPD 105 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl-~~ae~k-p~v~hnGWi~iGk~--~~~~~aelHl~Vr~EpD 105 (371)
..|+|.||.-.. +....+||.++|+|.- ...... ...++-.|..+-.. ..+...+|||.++.-|.
T Consensus 74 ~~L~~~V~d~d~-----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 74 HRILFEVFDENR-----LTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp CEEEEEEEECC---------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CEEEEEEEECCC-----CCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 589999998543 2345799999999963 222221 12234579988542 22356799999987663
No 5
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=72.43 E-value=13 Score=29.26 Aligned_cols=56 Identities=11% Similarity=0.338 Sum_probs=38.0
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceeecCCCCCCCCceEEEEEeecC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLKLGREPDKPSARIHLTVRSEP 104 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr~Ep 104 (371)
..|+|.||.-.. +....+||.+.|+|. +...... -+..|+.+- +..+|||.++.++
T Consensus 77 ~~L~~~V~d~d~-----~~~dd~iG~~~i~l~~l~~~~~~---~~~~w~~L~-----~~G~i~l~l~~~~ 133 (136)
T 1gmi_A 77 RKIELAVFHDAP-----IGYDDFVANCTIQFEELLQNGSR---HFEDWIDLE-----PEGKVYVIIDLSG 133 (136)
T ss_dssp CEEEEEEEECCS-----SSSCEEEEEEEEEHHHHTSTTCS---EEEEEEECB-----SSCEEEEEEEEEE
T ss_pred CEEEEEEEeCCC-----CCCCCEEEEEEEEHHHhcccCCC---CccEEEEcC-----CCeEEEEEEEEEe
Confidence 579999997443 234569999999995 3332222 246799874 3458999987653
No 6
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=69.93 E-value=24 Score=27.78 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=41.2
Q ss_pred ceEEEEEEecCCCC------cccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCC--CCCCceEEEEEeecC
Q 017474 36 ITLRVSVYAGRMGS------TCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREP--DKPSARIHLTVRSEP 104 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~------~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~--~~~~aelHl~Vr~Ep 104 (371)
..|+|.||.-.... .=+.....+||.+.|+|+-- .. -...|..+-+.. .....+|||.+..|-
T Consensus 77 ~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l--~~----~~~~w~~L~~~~~~~~~~G~i~l~l~~e~ 147 (148)
T 3kwu_A 77 DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SG----EMDVWYNLDKRTDKSAVSGAIRLHISVEI 147 (148)
T ss_dssp CEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGC--CS----EEEEEEECBCSSTTCCCCCEEEEEEEEEC
T ss_pred CEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHC--cC----CCCEEEEcccCCCCCCCceEEEEEEEEEe
Confidence 58999999855420 00013457999999999632 11 246899996532 224569999998875
No 7
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=61.05 E-value=5 Score=31.26 Aligned_cols=62 Identities=6% Similarity=0.176 Sum_probs=42.0
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCCCCCCCceEEEEEeecCC
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGREPDKPSARIHLTVRSEPD 105 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~~~~~~aelHl~Vr~EpD 105 (371)
...|+|.||.-.. +....+||.+.|+|.--...+ ..+..|..|-+ .++...+|||.++..|.
T Consensus 70 ~~~l~~~V~d~~~-----~~~d~~lG~~~i~l~~l~~~~---~~~~~w~~L~~-~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 70 TTELKAKIFDKDV-----GTEDDAVGEATIPLEPVFVEG---SIPPTAYNVVK-DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp CCEEEEEECCSSS-----CTTTCCSEEEEEESHHHHHHS---EEEEEEEEEEE-TTEEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEECCC-----CCCCceEEEEEEEHHHhccCC---CCCcEEEEeec-CCccCEEEEEEEEEEeC
Confidence 4689999998543 234579999999996211112 35678888742 22356799999988775
No 8
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=51.35 E-value=22 Score=30.12 Aligned_cols=55 Identities=13% Similarity=0.271 Sum_probs=38.0
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCcc--CCcceEEeeceeecCCCCCCCCceEEEEEeec
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGA--DSKSIVFRNGWLKLGREPDKPSARIHLTVRSE 103 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~a--e~kp~v~hnGWi~iGk~~~~~~aelHl~Vr~E 103 (371)
..|+|.||.-.. ++...+||++.|+|. +... .+ -.+..|+.+-. ..+|||.+..|
T Consensus 99 ~~L~~~V~D~d~-----~~~dd~iG~~~i~l~~l~~~~~~~---~~~~~W~~L~~-----~G~i~l~l~~~ 156 (157)
T 2fk9_A 99 GHLELAVFHETP-----LGYDHFVANCTLQFQELLRTTGAS---DTFEGWVDLEP-----EGKVFVVITLT 156 (157)
T ss_dssp CEEEEEEEECCS-----SSSCEEEEEEEEEHHHHHHHHTTC---SEEEEEEECBS-----SCEEEEEEEEC
T ss_pred CEEEEEEEECCC-----CCCCCEEEEEEEEHHHhhcccCCC---CcccEEEECCC-----CcEEEEEEEEE
Confidence 478899997432 334569999999995 3222 22 24689999943 45999998875
No 9
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=51.00 E-value=22 Score=27.67 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=38.4
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCC--CCCCCceEEEEEee
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGRE--PDKPSARIHLTVRS 102 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~--~~~~~aelHl~Vr~ 102 (371)
...|+|.||.-... ....+||.+.|+|.-- ..+. ..|..+-.. .+....+|||.++.
T Consensus 72 ~~~l~i~V~d~d~~-----~~~~~lG~~~i~l~~l-~~~~-----~~w~~L~~~~~~~~~~G~i~l~i~~ 130 (133)
T 2ep6_A 72 HDVLEVTVFDEDGD-----KPPDFLGKVAIPLLSI-RDGQ-----PNCYVLKNKDLEQAFKGVIYLEMDL 130 (133)
T ss_dssp TCEEEEEEEEEETT-----EEEEECCBCEEEGGGC-CSSC-----CEECCCBCSCTTSCCSSEEEEEEEE
T ss_pred CCEEEEEEEECCCC-----CCCCeeEEEEEEHHHc-cCCC-----ceEEEeecCCCCCccceEEEEEEEE
Confidence 35899999985542 2346899999999632 2333 268887432 22367799999865
No 10
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=41.93 E-value=1.6e+02 Score=25.55 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=40.8
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCCC---CCCCCceEEEEEeecCCCc
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGRE---PDKPSARIHLTVRSEPDPR 107 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk~---~~~~~aelHl~Vr~EpDPR 107 (371)
..|+|.||.-.. ++...+||.+.|+|.-- ..++ ....|..+-.. ......++++.++..|...
T Consensus 85 ~~l~~~V~d~d~-----~~~~~~lG~~~i~l~~l-~~~~---~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~ 150 (284)
T 2r83_A 85 KTLVMAVYDFDR-----FSKHDIIGEFKVPMNTV-DFGH---VTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG 150 (284)
T ss_dssp CEEEEEEEECCS-----SSCCCEEEEEEEEGGGC-CCSS---CEEEEEECBCCSSCCCCCCCEEEEEEEEETTTT
T ss_pred CEEEEEEEECCC-----CCCCceeEEEEEcchhc-ccCC---cceeEEEeeccccccccccccEEEEEEecCcCC
Confidence 589999998543 23456999999998631 1122 34679988432 1224568888887766543
No 11
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=38.11 E-value=60 Score=24.71 Aligned_cols=42 Identities=19% Similarity=0.363 Sum_probs=25.9
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeec
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKL 85 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~i 85 (371)
..|+|.||.-..... +...+||.+.|+|+--..++ +.+|..+
T Consensus 87 ~~l~~~V~d~d~~~~---~~~~~lG~~~i~l~~l~~~~-----~~~W~~L 128 (129)
T 2bwq_A 87 RMLEITLWDQARVRE---EESEFLGEILIELETALLDD-----EPHWYKL 128 (129)
T ss_dssp CEEEEEEEEC----------CEEEEEEEEEGGGCCCSS-----CEEEEEC
T ss_pred CeEEEEEEECCcCcC---cCCceeEEEEEEccccCCCc-----CCccEEC
Confidence 589999998544211 12579999999996322222 6788765
No 12
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=35.99 E-value=1.3e+02 Score=23.29 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=32.7
Q ss_pred eEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeec
Q 017474 20 GFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKL 85 (371)
Q Consensus 20 ~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~i 85 (371)
.|.+...+|. ...|+|.||.-.+ +....+||.+.|+|+- -..+++ +..|..|
T Consensus 89 ~f~v~~~~l~-----~~~L~i~V~d~d~-----~~~~~~iG~~~i~l~~-l~~~~~---~~~W~~L 140 (143)
T 3f04_A 89 TFKVPYSELG-----GKTLVMAVYDFDR-----FSKHDIIGEFKVPMNT-VDFGHV---TEEWRDL 140 (143)
T ss_dssp EECCCHHHHT-----TCEEEEEEEECCS-----SSCCEEEEEEEEEGGG-CCTTSC---EEEEEEC
T ss_pred EEeecHhhcC-----CCEEEEEEEeCCC-----CCCCceEEEEEEEHHH-ccCCCC---cceEEEC
Confidence 3555555552 2589999998543 2344799999999962 222222 3468776
No 13
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=35.31 E-value=1.6e+02 Score=23.02 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=34.8
Q ss_pred eEe-cCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCC
Q 017474 20 GFH-LDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGR 87 (371)
Q Consensus 20 ~F~-Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk 87 (371)
.|. +...+|. ...|+|.||.-.. ++...+||.+.|+|+-- ..+.+ +.+|..+-.
T Consensus 76 ~f~~v~~~~l~-----~~~L~~~V~d~d~-----~~~~~~lG~~~i~l~~l-~~~~~---~~~W~~L~~ 130 (134)
T 2b3r_A 76 VYSGYSKETLR-----QRELQLSVLSAES-----LRENFFLGGITLPLKDF-NLSKE---TVKWYQLTA 130 (134)
T ss_dssp EEESCCHHHHT-----TCEEEEEEEECCS-----SSCCEEEEEEEEEGGGS-CTTSC---EEEEEECBC
T ss_pred EECCcCHHHhC-----cCEEEEEEEECCC-----CCCCcEEEEEEEEhhhc-cCCCC---cceeEECCC
Confidence 355 6666652 3589999998543 23447999999999732 22222 468988743
No 14
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=31.32 E-value=22 Score=34.63 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=17.8
Q ss_pred CCceEEEEeeCCCCCCCccccchh
Q 017474 215 NPGAWLILRPNGFSVSSWKPWGRL 238 (371)
Q Consensus 215 NPGAWLIlrP~~~~~~sWkPWGRL 238 (371)
-|++|+|-|-.+.+ .||+||.-.
T Consensus 128 RP~sm~ierS~D~G-~tW~P~QYf 150 (338)
T 3tbd_A 128 RPTVMVLEKSLDNG-RTWQPYQFY 150 (338)
T ss_dssp CCSEEEEEEESSTT-SSCEEEEEE
T ss_pred CCCeEEEEeccCCC-CCceeehhh
Confidence 48999999986532 589999644
No 15
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=31.32 E-value=21 Score=34.73 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=17.7
Q ss_pred CCceEEEEeeCCCCCCCccccchh
Q 017474 215 NPGAWLILRPNGFSVSSWKPWGRL 238 (371)
Q Consensus 215 NPGAWLIlrP~~~~~~sWkPWGRL 238 (371)
-|.+|+|.|=.+. ..+|+||.-.
T Consensus 125 rP~~m~Iers~d~-G~tw~p~qyf 147 (375)
T 4aqt_A 125 RPESFAIYKRTRE-DGPWIPYQYY 147 (375)
T ss_dssp CCSEEEEEEESSS-SSCCEEEEEE
T ss_pred CCCcEEEEEecCC-CCCccceeee
Confidence 4999999997543 2589999764
No 16
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=31.16 E-value=21 Score=35.40 Aligned_cols=24 Identities=25% Similarity=0.815 Sum_probs=18.7
Q ss_pred CCceEEEEeeCCCCCCCccccchhh
Q 017474 215 NPGAWLILRPNGFSVSSWKPWGRLE 239 (371)
Q Consensus 215 NPGAWLIlrP~~~~~~sWkPWGRLE 239 (371)
-|++|+|-|-.+. ..||+||.-+-
T Consensus 132 RP~~m~ierS~D~-G~tW~p~qyfa 155 (403)
T 2y38_A 132 RPDLWVLERSTDF-GHTYQPWQFFA 155 (403)
T ss_dssp CCSEEEEEEESSS-SSSEEEEEEEC
T ss_pred CCCeEEEEeccCC-CCCccceeccc
Confidence 5899999997543 25899998763
No 17
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=30.95 E-value=22 Score=34.85 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=18.1
Q ss_pred CCceEEEEeeCCCCCCCccccchh
Q 017474 215 NPGAWLILRPNGFSVSSWKPWGRL 238 (371)
Q Consensus 215 NPGAWLIlrP~~~~~~sWkPWGRL 238 (371)
-|++|+|-|=.+. ..||+||.-.
T Consensus 127 rP~~~~ieks~d~-g~tw~p~qy~ 149 (525)
T 4aqs_A 127 RPAAMLIERSSDF-GKAWGVYRYF 149 (525)
T ss_dssp CCSEEEEEEESST-TSSCEEEEEE
T ss_pred CCCeEEEEEecCC-CCCCcceeee
Confidence 4999999997543 2599999865
No 18
>4i21_C ERBB receptor feedback inhibitor 1; EGFR kinase domain, phosphotransfer, MIG6 peptide, ATP bindi transferase-transferase inhibitor complex; 3.37A {Homo sapiens} PDB: 2rf9_C
Probab=30.81 E-value=7.9 Score=29.95 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=10.4
Q ss_pred ecCCCceEEEeCCccccCceEEEeecCc
Q 017474 102 SEPDPRFVFQFGGEPECSPVVFQIQGNI 129 (371)
Q Consensus 102 ~EpDPRyVFQFdgepecsPqV~QvqG~~ 129 (371)
.-+||.|| +|||+|-||+-
T Consensus 40 FA~dPkY~---------spkviq~q~se 58 (62)
T 4i21_C 40 FAPDPKYV---------SSKALQRQNSE 58 (62)
T ss_dssp CTTCTTTS---------CCCCC------
T ss_pred cccCcccc---------chhhhcccccc
Confidence 45788886 89999999864
No 19
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=30.16 E-value=23 Score=35.40 Aligned_cols=23 Identities=13% Similarity=0.544 Sum_probs=17.7
Q ss_pred CCceEEEEeeCCCCCCCccccchh
Q 017474 215 NPGAWLILRPNGFSVSSWKPWGRL 238 (371)
Q Consensus 215 NPGAWLIlrP~~~~~~sWkPWGRL 238 (371)
-|++|+|-|-.+. ..+|+||.-.
T Consensus 156 RP~am~ierS~D~-G~tW~p~qYf 178 (426)
T 3zyj_B 156 RPDQMILEKSLDY-GRTWQPYQYY 178 (426)
T ss_dssp CCSEEEEEEESST-TSSCEEEEEE
T ss_pred CCCeEEEEeccCC-CCCceehHHH
Confidence 5899999997553 2589999654
No 20
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=29.91 E-value=1.8e+02 Score=23.01 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=34.1
Q ss_pred eEecCHHHHHhhhCCCceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecC
Q 017474 20 GFHLDAASLRRLSNKPITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLG 86 (371)
Q Consensus 20 ~F~Ld~s~l~~l~~~~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iG 86 (371)
.|.+...+|. ...|+|.||.-.. +....+||.+.|+|+-- ..+. .+..|..+-
T Consensus 97 ~f~v~~~~l~-----~~~L~i~V~d~d~-----~~~~~~iG~~~i~l~~l-~~~~---~~~~W~~L~ 149 (152)
T 1rsy_A 97 TFKVPYSELG-----GKTLVMAVYDFDR-----FSKHDIIGEFKVPMNTV-DFGH---VTEEWRDLQ 149 (152)
T ss_dssp EECCCHHHHT-----TCEEEEEEEECCS-----SSCCEEEEEEEEEGGGC-CCSS---CEEEEEECB
T ss_pred EEeecHHHcC-----CCEEEEEEEECCC-----CCCCcEEEEEEEEchhc-cCCC---CcceEEECC
Confidence 4566655552 3689999998543 23457999999999621 2222 246788763
No 21
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=29.48 E-value=1.6e+02 Score=22.59 Aligned_cols=44 Identities=18% Similarity=0.338 Sum_probs=29.7
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGR 87 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk 87 (371)
..|+|.||.-..... +...+||.+.|+|+--...+ ...|..+-.
T Consensus 90 ~~l~i~V~d~d~~~~---~~~~~lG~~~i~l~~l~~~~-----~~~W~~L~~ 133 (141)
T 1v27_A 90 RMLEITLWDQARVRE---EESEFLGEILIELETALLDD-----EPHWYKLQT 133 (141)
T ss_dssp CEEEEEEEEBCSSSS---CCBCCCEEEEEEGGGCCCSS-----EEEEEECBC
T ss_pred CEEEEEEEECCCCcC---CCCceEEEEEEEccccCCCC-----CCceEECcc
Confidence 589999998554311 12568999999996322222 578999855
No 22
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.00 E-value=1.1e+02 Score=23.75 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=29.8
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcccCccCCcceEEeeceeecCC
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIIDLAGADSKSIVFRNGWLKLGR 87 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ldl~~ae~kp~v~hnGWi~iGk 87 (371)
...|+|.||.-.+ +....+||.+.|+|+- -..+. .+..|..|-.
T Consensus 92 ~~~l~i~V~d~d~-----~~~~~~iG~~~i~l~~-l~~~~---~~~~W~~L~~ 135 (141)
T 2d8k_A 92 QRILYLQVLDYDR-----FSRNDPIGEVSIPLNK-VDLTQ---MQTFWKDLKP 135 (141)
T ss_dssp TSEEEEEEEECCS-----SSSCEEEEEEEEETTT-SCTTS---CEEEEECCEE
T ss_pred cCEEEEEEEECCC-----CCCCcEEEEEEEEhhh-hcCCC---CccEEEECcC
Confidence 3589999998544 2345799999999862 11222 3678998844
No 23
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=25.58 E-value=73 Score=27.66 Aligned_cols=60 Identities=15% Similarity=0.261 Sum_probs=38.3
Q ss_pred CceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceeec-CCCCCCCCceEEEEEeecC
Q 017474 35 PITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLKL-GREPDKPSARIHLTVRSEP 104 (371)
Q Consensus 35 ~~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~i-Gk~~~~~~aelHl~Vr~Ep 104 (371)
..+|+|.||.=.+ |.+-|+||+++|+|. +.... .+.+ +..| ..+++..+|++-|.|+-+|
T Consensus 79 ~e~L~v~V~d~~~-----v~~nrlIG~~~i~Lq~lv~~~--~l~l---~~~LvD~n~~~~~a~I~l~l~Y~p 140 (144)
T 3l9b_A 79 NEVLEIQIFNYSK-----VFSNKLIGTFRMVLQKVVEEN--RVEV---SDTLIDDNNAIIKTSLSMEVRYQA 140 (144)
T ss_dssp TCEEEEEEEEECT-----TSCCEEEEEEEEESHHHHHHS--EEEE---EEEEECTTSCEEEEEEEEEEEEEE
T ss_pred CCEEEEEEEECcc-----ccCCCEEEEEEEEhHHhccCC--eEEE---eecccCCCCCccccEEEEEEEecC
Confidence 4799999998332 235699999999984 33322 2333 2333 2233334689999888766
No 24
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=24.66 E-value=57 Score=25.77 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=28.8
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEEcc-cCccCCcceEEeeceeecCC
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVIID-LAGADSKSIVFRNGWLKLGR 87 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ld-l~~ae~kp~v~hnGWi~iGk 87 (371)
..|+|.||.-.. +....+||.+.|+|+ +.... -+..|..|-.
T Consensus 92 ~~L~~~V~d~d~-----~~~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~ 134 (148)
T 3fdw_A 92 RTLQFSVWHHGR-----FGRNTFLGEAEIQMDSWKLDK-----KLDHCLPLHG 134 (148)
T ss_dssp CEEEEEEEEECG-----GGCEEEEEEEEEEHHHHHHHC-----CSEEEEECBC
T ss_pred eEEEEEEEECCC-----CcCCcEEEEEEEEcccccccC-----CccceEECcC
Confidence 479999997433 234579999999996 33222 2458999943
No 25
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=22.53 E-value=2.5e+02 Score=23.54 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEE
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVI 65 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ 65 (371)
..+.|.||.|..-- ++..++||+|.|.
T Consensus 45 ~~v~I~VyqGe~~~---~~dn~~LG~f~l~ 71 (152)
T 3dob_A 45 PGVSIQVYEGERAM---TRDNHRLGTFELS 71 (152)
T ss_dssp CEEEEEEEESSCSB---GGGSEEEEEEEEE
T ss_pred eEEEEEEEEcCccc---cccCceeEEEEEe
Confidence 57899999987643 2455899999997
No 26
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=22.50 E-value=3e+02 Score=23.09 Aligned_cols=27 Identities=26% Similarity=0.601 Sum_probs=20.8
Q ss_pred ceEEEEEEecCCCCcccccCceeeeEEEEE
Q 017474 36 ITLRVSVYAGRMGSTCGVSSGKLLGRLNVI 65 (371)
Q Consensus 36 ~~L~v~Vy~Gr~G~~CGv~~~kllG~v~v~ 65 (371)
..+.|.||.|..-. ++..++||+|.|.
T Consensus 45 ~~v~i~VyqGe~~~---~~dn~~LG~f~l~ 71 (151)
T 3dqg_A 45 TQVQIKVFQGEREM---ATSNKLLGQFSLV 71 (151)
T ss_dssp CEEEEEEEESSCSB---GGGSEEEEEEEEE
T ss_pred ceEEEEEEEcCCcc---cccCcEEEEEEEe
Confidence 57999999997532 2455799999996
Done!