BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017476
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
+EKR P Y++G + + L VEEGVF+PRPETE +V+L +++ + G++
Sbjct: 82 VEKRASGYPLHYILGEKEFXGLSFLVEEGVFVPRPETEELVELALELIRKY--GIKT--V 137
Query: 200 VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGK 259
D+GT + S + +R+G+ D +R+G +
Sbjct: 138 ADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 195
Query: 260 LKDVEGKLSGVVSNPPYIPS 279
K+ + ++SNPPY+ S
Sbjct: 196 FKEKFASIEXILSNPPYVKS 215
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
+EKR P Y++G + + L VEEGVF+PRPETE +V+L +++ + G++
Sbjct: 70 VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY--GIKT--V 125
Query: 200 VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGK 259
D+GT + S + +R+G+ D +R+G +
Sbjct: 126 ADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 183
Query: 260 LKDVEGKLSGVVSNPPYIPS 279
K+ + ++SNPPY+ S
Sbjct: 184 FKEKFASIEMILSNPPYVKS 203
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 143 IEKRK---PFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFW 199
+EKR P Y++G + + L VEEGVF+PRPETE +V+L +++ + G++
Sbjct: 72 VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKY--GIKT--V 127
Query: 200 VDLGTXXXXXXXXXXRVLGSKGSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGK 259
D+GT + S + +R+G+ D +R+G +
Sbjct: 128 ADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP 185
Query: 260 LKDVEGKLSGVVSNPPYIPS 279
K+ + ++SNPPY+ S
Sbjct: 186 FKEKFASIEMILSNPPYVKS 205
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 81/225 (36%), Gaps = 20/225 (8%)
Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTXX 206
+P +L G + L L V IPRP+TE LV L R + + +DLGT
Sbjct: 66 EPIAHLTGVREFWSLPLFVSPATLIPRPDTEC---LVEQALARLPE--QPCRILDLGTGT 120
Query: 207 XXXXXXXXRVLGSK---GSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGKLKDV 263
L S+ II Q +++ I I Q WF L
Sbjct: 121 GAIAL----ALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFSALAG- 174
Query: 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXXCNGTASMLKPGG 323
+ + +VSNPPYI D Q +V + EP + + L GG
Sbjct: 175 -QQFAMIVSNPPYIDEQDPHLQQGDV-RFEPLTALVAADSGMADIVHIIEQSRNALVSGG 232
Query: 324 FFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
F E +G +Q + ++ + +V D+ +R G
Sbjct: 233 FLLLE-HGWQQGEAVRQAF---ILAGYHDVETCRDYGDNERVTLG 273
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 81/225 (36%), Gaps = 20/225 (8%)
Query: 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTXX 206
+P +L G + L L V IPRP+TE LV L R + + +DLGT
Sbjct: 66 EPIAHLTGVREFWSLPLFVSPATLIPRPDTEC---LVEQALARLPE--QPCRILDLGTGT 120
Query: 207 XXXXXXXXRVLGSK---GSIIXXXXXXXXXXXXXXXXQRYGLQDIIEIRQGSWFGKLKDV 263
L S+ II Q +++ I I Q WF L
Sbjct: 121 GAIAL----ALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN-IHILQSDWFSALAG- 174
Query: 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRXXXXXXXXXXXXXXXXCNGTASMLKPGG 323
+ + +VSNPPYI D Q +V + EP + + L GG
Sbjct: 175 -QQFAMIVSNPPYIDEQDPHLQQGDV-RFEPLTALVAADSGMADIVHIIEQSRNALVSGG 232
Query: 324 FFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368
F E +G +Q + ++ + +V D+ +R G
Sbjct: 233 FLLLE-HGWQQGEAVRQAF---ILAGYHDVETCRDYGDNERVTLG 273
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTXXXXXXXXXXRVLGSKG-SIIXXXX 228
IPRP+TE++V+ L R G R +D+GT L G S+
Sbjct: 8 LIPRPDTEVLVEEAIRFLKRXPSGTR---VIDVGTGSGCIAVSI--ALACPGVSVTAVDL 62
Query: 229 XXXXXXXXXXXXQRYG-LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQV 287
+R+G + D W + + +VSNPPYIP+ +I L+
Sbjct: 63 SXDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEP 122
Query: 288 EVGKHEPR 295
V +EPR
Sbjct: 123 SVRDYEPR 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,644,273
Number of Sequences: 62578
Number of extensions: 344662
Number of successful extensions: 931
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 12
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)