Query 017476
Match_columns 371
No_of_seqs 495 out of 3285
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:54:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2904 Predicted methyltransf 100.0 3.9E-49 8.4E-54 362.2 27.0 296 56-371 26-328 (328)
2 TIGR00536 hemK_fam HemK family 100.0 1E-47 2.2E-52 368.1 27.2 281 66-371 3-283 (284)
3 COG2890 HemK Methylase of poly 100.0 2.5E-47 5.4E-52 363.7 27.3 274 65-370 2-276 (280)
4 PRK01544 bifunctional N5-gluta 100.0 1.6E-47 3.4E-52 392.4 27.3 281 66-369 5-305 (506)
5 PRK14966 unknown domain/N5-glu 100.0 1.4E-45 3E-50 364.2 27.0 255 97-370 164-418 (423)
6 PRK11805 N5-glutamine S-adenos 100.0 1.7E-41 3.7E-46 327.9 27.1 286 58-368 8-295 (307)
7 TIGR03533 L3_gln_methyl protei 100.0 2.8E-41 6E-46 323.4 25.2 265 65-351 3-268 (284)
8 PRK09328 N5-glutamine S-adenos 100.0 6.7E-41 1.5E-45 318.3 26.5 273 65-370 3-275 (275)
9 TIGR03704 PrmC_rel_meth putati 100.0 7E-39 1.5E-43 301.6 24.1 228 97-359 14-243 (251)
10 TIGR03534 RF_mod_PrmC protein- 100.0 2.4E-35 5.2E-40 276.0 22.9 251 99-367 1-251 (251)
11 PLN02672 methionine S-methyltr 100.0 4.7E-33 1E-37 301.5 23.5 197 153-357 79-303 (1082)
12 PF05175 MTS: Methyltransferas 99.9 5.3E-23 1.1E-27 182.7 18.0 161 161-361 2-165 (170)
13 PRK14967 putative methyltransf 99.9 3.3E-21 7.1E-26 178.4 20.2 175 158-351 4-178 (223)
14 TIGR00537 hemK_rel_arch HemK-r 99.9 1.2E-20 2.6E-25 168.7 20.1 163 169-355 1-163 (179)
15 COG4123 Predicted O-methyltran 99.8 1.2E-20 2.5E-25 175.3 14.2 165 160-344 17-184 (248)
16 PRK14968 putative methyltransf 99.8 1.7E-19 3.7E-24 161.2 20.4 181 166-367 2-183 (188)
17 KOG3191 Predicted N6-DNA-methy 99.8 1.9E-19 4.2E-24 157.4 17.5 186 167-365 16-201 (209)
18 COG2813 RsmC 16S RNA G1207 met 99.8 5.1E-19 1.1E-23 167.6 19.3 170 159-370 127-299 (300)
19 PRK11727 23S rRNA mA1618 methy 99.8 1.4E-18 3.1E-23 168.2 19.7 206 159-370 72-306 (321)
20 PRK15001 SAM-dependent 23S rib 99.8 2.4E-18 5.1E-23 170.3 20.2 139 160-330 198-341 (378)
21 PRK09489 rsmC 16S ribosomal RN 99.8 2.4E-17 5.3E-22 161.7 20.1 167 160-369 166-335 (342)
22 PF13659 Methyltransf_26: Meth 99.8 2.3E-18 5E-23 142.4 10.8 113 197-329 2-115 (117)
23 PRK10909 rsmD 16S rRNA m(2)G96 99.8 1.5E-17 3.3E-22 151.3 15.1 152 146-330 9-160 (199)
24 PRK13168 rumA 23S rRNA m(5)U19 99.8 5.5E-17 1.2E-21 164.8 20.6 169 145-355 241-422 (443)
25 COG2264 PrmA Ribosomal protein 99.7 1.4E-16 3.1E-21 151.7 19.9 189 132-366 95-296 (300)
26 PRK00107 gidB 16S rRNA methylt 99.7 7.8E-16 1.7E-20 138.8 19.0 139 196-371 46-187 (187)
27 PF12847 Methyltransf_18: Meth 99.7 1.7E-16 3.7E-21 130.0 13.2 110 196-329 2-111 (112)
28 PF06325 PrmA: Ribosomal prote 99.7 8.3E-16 1.8E-20 147.5 17.3 192 131-371 93-295 (295)
29 PRK00517 prmA ribosomal protei 99.7 4.4E-15 9.6E-20 139.8 21.6 189 131-370 52-249 (250)
30 TIGR00138 gidB 16S rRNA methyl 99.7 1.6E-15 3.6E-20 136.1 17.2 137 195-367 42-178 (181)
31 TIGR02752 MenG_heptapren 2-hep 99.7 6.7E-15 1.5E-19 136.3 20.2 145 195-370 45-231 (231)
32 PLN02336 phosphoethanolamine N 99.7 1.2E-15 2.7E-20 156.1 16.5 154 127-329 212-369 (475)
33 TIGR00406 prmA ribosomal prote 99.7 6.2E-15 1.3E-19 141.7 20.2 181 132-357 92-283 (288)
34 PRK11783 rlmL 23S rRNA m(2)G24 99.7 1.6E-15 3.6E-20 161.8 16.9 137 195-352 538-675 (702)
35 PHA03411 putative methyltransf 99.7 2.2E-15 4.8E-20 142.1 15.1 136 196-351 65-208 (279)
36 PRK00377 cbiT cobalt-precorrin 99.7 3.2E-15 7E-20 135.8 15.7 127 192-350 37-163 (198)
37 TIGR01177 conserved hypothetic 99.6 2.8E-15 6E-20 146.7 16.0 152 172-356 163-314 (329)
38 PRK14902 16S rRNA methyltransf 99.6 3.4E-15 7.3E-20 151.8 16.8 170 167-354 229-405 (444)
39 PRK08287 cobalt-precorrin-6Y C 99.6 6.9E-15 1.5E-19 132.3 17.0 124 195-355 31-154 (187)
40 PRK15128 23S rRNA m(5)C1962 me 99.6 2.3E-15 5E-20 150.4 14.6 131 195-344 220-355 (396)
41 TIGR02085 meth_trns_rumB 23S r 99.6 1E-14 2.2E-19 145.2 18.2 147 158-341 198-346 (374)
42 TIGR00091 tRNA (guanine-N(7)-) 99.6 4.2E-15 9E-20 134.8 13.3 145 196-362 17-163 (194)
43 PHA03412 putative methyltransf 99.6 2.9E-15 6.2E-20 138.4 11.5 108 196-327 50-160 (241)
44 TIGR00479 rumA 23S rRNA (uraci 99.6 1.5E-14 3.3E-19 146.5 17.6 166 146-352 241-415 (431)
45 PRK03522 rumB 23S rRNA methylu 99.6 2.5E-14 5.4E-19 139.2 17.8 147 158-341 138-286 (315)
46 PLN02233 ubiquinone biosynthes 99.6 8.4E-14 1.8E-18 132.0 20.8 146 195-370 73-261 (261)
47 PF01209 Ubie_methyltran: ubiE 99.6 3.1E-15 6.7E-20 139.4 10.6 105 195-327 47-151 (233)
48 PF13847 Methyltransf_31: Meth 99.6 1.1E-14 2.3E-19 126.6 12.8 109 195-331 3-112 (152)
49 PF03602 Cons_hypoth95: Conser 99.6 7.1E-15 1.5E-19 132.1 11.5 143 157-330 7-154 (183)
50 PRK00121 trmB tRNA (guanine-N( 99.6 1.3E-14 2.7E-19 132.5 13.0 130 195-344 40-171 (202)
51 PRK11188 rrmJ 23S rRNA methylt 99.6 2.9E-14 6.3E-19 130.8 14.4 138 195-364 51-196 (209)
52 TIGR00446 nop2p NOL1/NOP2/sun 99.6 1.2E-13 2.5E-18 131.2 18.5 140 195-344 71-217 (264)
53 PRK10901 16S rRNA methyltransf 99.6 8.1E-14 1.8E-18 141.0 18.2 162 195-369 244-423 (427)
54 COG2226 UbiE Methylase involve 99.6 1.2E-13 2.6E-18 128.4 17.5 104 195-327 51-154 (238)
55 PRK14903 16S rRNA methyltransf 99.6 5.6E-14 1.2E-18 142.2 16.1 144 195-344 237-384 (431)
56 PRK14904 16S rRNA methyltransf 99.6 7E-14 1.5E-18 142.2 16.9 162 165-344 227-395 (445)
57 TIGR02469 CbiT precorrin-6Y C5 99.6 1.1E-13 2.4E-18 114.8 15.1 104 195-329 19-122 (124)
58 PLN02244 tocopherol O-methyltr 99.6 1.7E-13 3.7E-18 134.7 17.8 107 194-329 117-223 (340)
59 TIGR00095 RNA methyltransferas 99.6 5.9E-14 1.3E-18 126.9 13.3 143 157-330 15-160 (189)
60 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.9E-13 4.2E-18 133.6 17.8 164 156-357 77-256 (340)
61 PRK07402 precorrin-6B methylas 99.5 1.6E-13 3.5E-18 124.4 16.1 129 195-355 40-168 (196)
62 PRK14901 16S rRNA methyltransf 99.5 1.8E-13 3.9E-18 138.8 18.2 165 194-369 251-429 (434)
63 COG2242 CobL Precorrin-6B meth 99.5 3.4E-13 7.5E-18 119.8 17.2 120 192-344 31-150 (187)
64 TIGR00563 rsmB ribosomal RNA s 99.5 3.2E-13 7E-18 136.6 18.7 142 195-345 238-387 (426)
65 PRK13944 protein-L-isoaspartat 99.5 2.3E-13 4.9E-18 124.5 15.8 116 178-330 59-174 (205)
66 PF05971 Methyltransf_10: Prot 99.5 6.7E-13 1.5E-17 126.9 18.7 207 159-370 63-296 (299)
67 TIGR00080 pimt protein-L-isoas 99.5 2.5E-13 5.4E-18 125.0 15.3 115 178-330 64-178 (215)
68 PRK11036 putative S-adenosyl-L 99.5 1.9E-13 4.1E-18 129.0 14.6 106 195-329 44-149 (255)
69 PRK11873 arsM arsenite S-adeno 99.5 6.9E-13 1.5E-17 126.1 17.6 132 195-357 77-230 (272)
70 PLN02781 Probable caffeoyl-CoA 99.5 2.4E-13 5.2E-18 126.9 13.8 119 175-329 55-178 (234)
71 COG0742 N6-adenine-specific me 99.5 4.3E-13 9.2E-18 119.7 14.5 146 157-330 8-155 (187)
72 PF01170 UPF0020: Putative RNA 99.5 8.3E-13 1.8E-17 118.4 16.0 152 172-355 9-169 (179)
73 COG2519 GCD14 tRNA(1-methylade 99.5 3.9E-13 8.5E-18 124.4 14.0 128 192-355 91-218 (256)
74 PF08704 GCD14: tRNA methyltra 99.5 6.7E-13 1.5E-17 124.3 15.8 132 192-357 37-171 (247)
75 PRK05031 tRNA (uracil-5-)-meth 99.5 5.9E-13 1.3E-17 131.9 16.0 142 161-342 175-333 (362)
76 TIGR00438 rrmJ cell division p 99.5 9.2E-13 2E-17 118.6 15.4 138 194-364 31-177 (188)
77 PLN02396 hexaprenyldihydroxybe 99.5 7.2E-13 1.6E-17 129.0 14.8 105 195-329 131-235 (322)
78 COG2263 Predicted RNA methylas 99.5 3.4E-12 7.4E-17 113.2 17.4 141 171-355 26-166 (198)
79 COG2230 Cfa Cyclopropane fatty 99.5 6.2E-13 1.3E-17 125.9 13.4 108 192-329 69-176 (283)
80 PRK00216 ubiE ubiquinone/menaq 99.5 6.4E-12 1.4E-16 116.1 19.8 147 195-371 51-239 (239)
81 PRK12335 tellurite resistance 99.5 2.1E-12 4.5E-17 124.1 16.9 103 195-328 120-222 (287)
82 PRK13942 protein-L-isoaspartat 99.5 1E-12 2.3E-17 120.8 14.0 115 178-330 63-177 (212)
83 TIGR00477 tehB tellurite resis 99.5 1.1E-12 2.5E-17 118.9 13.8 103 195-328 30-132 (195)
84 COG2227 UbiG 2-polyprenyl-3-me 99.5 2.5E-13 5.4E-18 124.8 9.5 106 194-331 58-163 (243)
85 smart00828 PKS_MT Methyltransf 99.5 1.9E-12 4.2E-17 119.3 15.4 128 198-357 2-144 (224)
86 PF02353 CMAS: Mycolic acid cy 99.4 1.1E-12 2.3E-17 125.2 13.8 110 190-329 57-166 (273)
87 PF10672 Methyltrans_SAM: S-ad 99.4 2.6E-12 5.7E-17 122.7 16.3 128 195-344 123-254 (286)
88 PRK04457 spermidine synthase; 99.4 1.3E-12 2.9E-17 123.9 14.2 149 195-370 66-216 (262)
89 PRK15451 tRNA cmo(5)U34 methyl 99.4 1.9E-12 4.1E-17 121.7 15.1 108 195-329 56-164 (247)
90 PRK11207 tellurite resistance 99.4 1.8E-12 3.8E-17 117.9 14.0 103 195-327 30-132 (197)
91 PF02384 N6_Mtase: N-6 DNA Met 99.4 2.4E-12 5.2E-17 124.7 15.5 162 169-344 28-203 (311)
92 PRK14103 trans-aconitate 2-met 99.4 1.1E-12 2.4E-17 123.7 12.5 99 194-329 28-126 (255)
93 TIGR02143 trmA_only tRNA (urac 99.4 3.4E-12 7.4E-17 126.1 16.1 142 161-342 166-324 (353)
94 PLN02476 O-methyltransferase 99.4 2.3E-12 4.9E-17 122.6 13.9 121 173-329 103-228 (278)
95 PRK15068 tRNA mo(5)U34 methylt 99.4 6.7E-12 1.4E-16 122.5 16.9 131 194-357 121-274 (322)
96 PRK14121 tRNA (guanine-N(7)-)- 99.4 3.9E-12 8.4E-17 125.9 15.3 128 195-344 122-250 (390)
97 COG1092 Predicted SAM-dependen 99.4 7E-13 1.5E-17 131.4 9.5 117 195-330 217-337 (393)
98 PRK04266 fibrillarin; Provisio 99.4 1.3E-11 2.8E-16 114.7 17.3 143 193-370 70-225 (226)
99 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 2E-11 4.2E-16 111.7 18.4 142 195-370 39-223 (223)
100 PF13649 Methyltransf_25: Meth 99.4 9.2E-13 2E-17 106.5 8.2 99 199-323 1-101 (101)
101 TIGR02716 C20_methyl_CrtF C-20 99.4 8.7E-12 1.9E-16 120.7 16.4 105 194-328 148-253 (306)
102 KOG1271 Methyltransferases [Ge 99.4 6.2E-12 1.3E-16 110.6 13.7 158 175-357 47-205 (227)
103 PF08241 Methyltransf_11: Meth 99.4 1.5E-12 3.2E-17 102.5 8.9 95 200-327 1-95 (95)
104 PRK01683 trans-aconitate 2-met 99.4 4.4E-12 9.6E-17 119.5 13.5 102 194-330 30-131 (258)
105 TIGR00452 methyltransferase, p 99.4 1.5E-11 3.2E-16 119.4 17.3 133 192-357 118-273 (314)
106 PTZ00098 phosphoethanolamine N 99.4 2E-11 4.4E-16 115.8 17.8 106 194-329 51-156 (263)
107 PRK08317 hypothetical protein; 99.4 3.3E-11 7.2E-16 110.9 18.6 123 174-329 2-124 (241)
108 PRK10258 biotin biosynthesis p 99.4 8.2E-12 1.8E-16 117.3 14.5 111 195-341 42-152 (251)
109 TIGR00740 methyltransferase, p 99.4 1.4E-11 3.1E-16 115.0 15.8 108 195-329 53-161 (239)
110 PF01596 Methyltransf_3: O-met 99.4 2.5E-12 5.5E-17 117.6 10.2 120 174-329 31-155 (205)
111 PLN03075 nicotianamine synthas 99.4 2E-11 4.4E-16 116.8 16.6 145 195-370 123-274 (296)
112 TIGR02987 met_A_Alw26 type II 99.4 1.2E-11 2.7E-16 128.3 16.4 175 168-344 5-215 (524)
113 PF03848 TehB: Tellurite resis 99.4 9.3E-12 2E-16 112.3 13.3 105 194-329 29-133 (192)
114 PF05401 NodS: Nodulation prot 99.4 3.4E-11 7.4E-16 108.0 16.8 139 196-369 44-193 (201)
115 smart00650 rADc Ribosomal RNA 99.4 6.6E-12 1.4E-16 111.2 12.0 77 194-277 12-88 (169)
116 COG4122 Predicted O-methyltran 99.4 8.3E-12 1.8E-16 114.6 12.9 120 174-329 45-166 (219)
117 COG2265 TrmA SAM-dependent met 99.3 1.5E-11 3.3E-16 123.9 15.3 147 160-343 260-410 (432)
118 PRK00811 spermidine synthase; 99.3 1.9E-11 4.2E-16 117.2 15.1 150 195-370 76-237 (283)
119 COG1041 Predicted DNA modifica 99.3 1.7E-11 3.7E-16 118.6 14.6 137 194-360 196-333 (347)
120 PF01135 PCMT: Protein-L-isoas 99.3 1.3E-11 2.8E-16 113.2 12.8 134 156-330 40-173 (209)
121 TIGR03587 Pse_Me-ase pseudamin 99.3 8.6E-12 1.9E-16 114.1 11.5 110 152-273 2-112 (204)
122 PRK06922 hypothetical protein; 99.3 2.1E-11 4.5E-16 126.8 15.5 119 195-329 418-537 (677)
123 PRK00312 pcm protein-L-isoaspa 99.3 2.4E-11 5.2E-16 111.4 14.3 100 194-330 77-176 (212)
124 KOG1540 Ubiquinone biosynthesi 99.3 3.8E-11 8.3E-16 110.8 14.9 109 192-327 97-212 (296)
125 COG4106 Tam Trans-aconitate me 99.3 7.5E-12 1.6E-16 112.9 9.7 106 194-334 29-134 (257)
126 PRK03612 spermidine synthase; 99.3 5.2E-11 1.1E-15 123.4 16.5 138 195-355 297-441 (521)
127 PF08242 Methyltransf_12: Meth 99.3 7.3E-13 1.6E-17 106.5 2.1 98 200-325 1-99 (99)
128 KOG2187 tRNA uracil-5-methyltr 99.3 1.8E-11 3.9E-16 122.7 11.9 163 146-344 332-505 (534)
129 TIGR03840 TMPT_Se_Te thiopurin 99.3 3.1E-11 6.7E-16 111.2 12.3 108 195-329 34-152 (213)
130 PLN02585 magnesium protoporphy 99.3 1.1E-10 2.3E-15 113.5 16.7 107 159-273 109-219 (315)
131 TIGR02072 BioC biotin biosynth 99.3 7.5E-11 1.6E-15 108.8 14.6 106 195-333 34-139 (240)
132 KOG1270 Methyltransferases [Co 99.3 7.2E-12 1.6E-16 116.1 7.6 101 196-329 90-195 (282)
133 TIGR02021 BchM-ChlM magnesium 99.3 1.8E-10 3.9E-15 106.1 16.9 88 176-272 38-125 (219)
134 COG2518 Pcm Protein-L-isoaspar 99.3 5.6E-11 1.2E-15 107.9 12.6 129 158-330 42-170 (209)
135 PLN02589 caffeoyl-CoA O-methyl 99.3 6.4E-11 1.4E-15 111.2 13.4 120 173-328 64-189 (247)
136 PRK11705 cyclopropane fatty ac 99.3 8.5E-11 1.9E-15 117.3 15.1 103 193-329 165-267 (383)
137 TIGR00417 speE spermidine synt 99.3 3.2E-10 7E-15 108.0 17.7 152 195-370 72-232 (270)
138 PRK01581 speE spermidine synth 99.3 5.3E-10 1.1E-14 109.6 19.3 197 146-370 104-313 (374)
139 PF02475 Met_10: Met-10+ like- 99.2 5.1E-11 1.1E-15 108.4 11.2 127 160-327 72-200 (200)
140 smart00138 MeTrc Methyltransfe 99.2 6.2E-11 1.3E-15 112.6 11.6 128 177-329 81-242 (264)
141 PF09445 Methyltransf_15: RNA 99.2 1.4E-10 3.1E-15 101.8 12.9 78 198-278 2-81 (163)
142 COG0116 Predicted N6-adenine-s 99.2 1.5E-10 3.3E-15 113.5 14.4 134 172-329 172-344 (381)
143 PTZ00146 fibrillarin; Provisio 99.2 4.9E-10 1.1E-14 107.0 17.5 145 178-357 116-271 (293)
144 PRK13943 protein-L-isoaspartat 99.2 1.4E-10 3E-15 113.0 14.0 114 179-330 68-181 (322)
145 PRK11088 rrmA 23S rRNA methylt 99.2 1.5E-10 3.2E-15 110.4 13.9 108 196-343 86-195 (272)
146 PRK11783 rlmL 23S rRNA m(2)G24 99.2 1.5E-10 3.3E-15 124.0 15.5 103 172-278 170-315 (702)
147 TIGR03438 probable methyltrans 99.2 2.2E-10 4.8E-15 110.8 15.2 136 173-336 44-184 (301)
148 PF05958 tRNA_U5-meth_tr: tRNA 99.2 1.3E-10 2.9E-15 114.8 13.5 108 160-276 164-288 (352)
149 PRK04338 N(2),N(2)-dimethylgua 99.2 1.2E-10 2.6E-15 116.1 13.0 101 196-329 58-158 (382)
150 cd02440 AdoMet_MTases S-adenos 99.2 1.4E-10 3.1E-15 90.9 10.8 103 198-328 1-103 (107)
151 PRK07580 Mg-protoporphyrin IX 99.2 4.6E-10 1E-14 103.6 15.8 88 178-273 47-134 (230)
152 PRK05134 bifunctional 3-demeth 99.2 4.9E-10 1.1E-14 103.9 15.7 119 176-329 33-151 (233)
153 PLN02366 spermidine synthase 99.2 1.3E-09 2.8E-14 105.7 18.8 199 146-370 43-253 (308)
154 TIGR01983 UbiG ubiquinone bios 99.2 1E-09 2.3E-14 100.9 17.0 105 195-329 45-149 (224)
155 PRK13255 thiopurine S-methyltr 99.2 2.4E-10 5.2E-15 105.6 12.7 103 195-327 37-153 (218)
156 PF02390 Methyltransf_4: Putat 99.2 3E-10 6.5E-15 103.2 12.1 141 198-359 20-162 (195)
157 PRK11933 yebU rRNA (cytosine-C 99.2 5.7E-10 1.2E-14 113.7 15.5 145 194-344 112-260 (470)
158 PTZ00338 dimethyladenosine tra 99.2 2.1E-10 4.5E-15 110.5 11.3 92 178-279 23-114 (294)
159 PF13489 Methyltransf_23: Meth 99.2 4.5E-10 9.7E-15 97.2 12.1 97 194-331 21-117 (161)
160 KOG3420 Predicted RNA methylas 99.1 9.3E-11 2E-15 99.6 6.9 83 192-279 45-127 (185)
161 PRK05785 hypothetical protein; 99.1 1.7E-09 3.7E-14 100.5 15.4 133 196-371 52-225 (226)
162 PLN02336 phosphoethanolamine N 99.1 6.8E-10 1.5E-14 113.8 12.8 104 195-328 37-141 (475)
163 KOG1541 Predicted protein carb 99.1 8.8E-10 1.9E-14 99.9 11.7 132 195-352 50-182 (270)
164 PRK14896 ksgA 16S ribosomal RN 99.1 5.8E-10 1.2E-14 105.6 11.1 76 195-279 29-104 (258)
165 PRK00274 ksgA 16S ribosomal RN 99.1 3.7E-10 8E-15 107.8 9.8 88 179-278 30-117 (272)
166 PF08003 Methyltransf_9: Prote 99.1 2.2E-09 4.8E-14 102.3 14.1 133 192-357 112-267 (315)
167 TIGR00308 TRM1 tRNA(guanine-26 99.0 1.7E-09 3.7E-14 107.4 12.5 102 197-329 46-147 (374)
168 COG2521 Predicted archaeal met 99.0 3.6E-10 7.9E-15 103.1 6.6 140 194-361 133-281 (287)
169 KOG2899 Predicted methyltransf 99.0 2.1E-09 4.5E-14 98.7 11.3 129 192-344 55-224 (288)
170 PRK13256 thiopurine S-methyltr 99.0 2.7E-09 6E-14 98.8 12.0 123 195-344 43-188 (226)
171 PLN02823 spermine synthase 99.0 1.9E-08 4E-13 98.7 17.9 153 195-369 103-266 (336)
172 COG2520 Predicted methyltransf 99.0 7.9E-09 1.7E-13 100.8 15.1 130 160-330 159-290 (341)
173 PRK06202 hypothetical protein; 99.0 4E-09 8.6E-14 98.0 11.1 75 195-274 60-137 (232)
174 COG0144 Sun tRNA and rRNA cyto 99.0 3.2E-08 6.8E-13 98.0 17.7 164 167-344 135-306 (355)
175 COG0286 HsdM Type I restrictio 98.9 6.1E-09 1.3E-13 107.1 12.4 167 168-344 167-346 (489)
176 KOG1499 Protein arginine N-met 98.9 5.8E-09 1.2E-13 100.8 11.2 107 193-326 58-164 (346)
177 KOG1663 O-methyltransferase [S 98.9 1.3E-08 2.9E-13 93.0 12.8 120 174-329 59-183 (237)
178 COG0220 Predicted S-adenosylme 98.9 1.1E-08 2.4E-13 94.8 12.2 127 197-343 50-179 (227)
179 COG4976 Predicted methyltransf 98.9 1.3E-09 2.9E-14 99.2 5.7 123 196-356 126-264 (287)
180 PF05185 PRMT5: PRMT5 arginine 98.9 1.2E-08 2.6E-13 103.7 12.4 104 196-325 187-293 (448)
181 PF10294 Methyltransf_16: Puta 98.9 6.7E-09 1.5E-13 92.5 9.1 128 174-329 22-156 (173)
182 PF05724 TPMT: Thiopurine S-me 98.9 5E-09 1.1E-13 96.8 8.4 126 195-351 37-184 (218)
183 KOG2915 tRNA(1-methyladenosine 98.9 6.2E-08 1.3E-12 90.5 15.5 135 192-360 102-238 (314)
184 TIGR00755 ksgA dimethyladenosi 98.9 1.2E-08 2.5E-13 96.4 10.1 86 179-277 17-105 (253)
185 KOG4300 Predicted methyltransf 98.8 1.1E-08 2.4E-13 92.0 8.9 119 197-344 78-197 (252)
186 PF07021 MetW: Methionine bios 98.8 1.8E-08 3.9E-13 90.3 9.7 69 195-273 13-82 (193)
187 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 5.7E-08 1.2E-12 93.3 12.9 142 194-344 84-237 (283)
188 KOG2730 Methylase [General fun 98.8 1.1E-08 2.4E-13 92.7 7.4 99 171-279 77-178 (263)
189 PF12147 Methyltransf_20: Puta 98.8 2.5E-07 5.5E-12 87.6 16.7 149 195-370 135-311 (311)
190 TIGR02081 metW methionine bios 98.8 5.8E-08 1.2E-12 87.8 12.0 73 195-277 13-86 (194)
191 PRK04148 hypothetical protein; 98.8 2.5E-08 5.4E-13 84.8 8.9 82 179-275 4-87 (134)
192 PF02527 GidB: rRNA small subu 98.8 4.4E-07 9.5E-12 81.7 17.2 133 176-343 28-161 (184)
193 PF00891 Methyltransf_2: O-met 98.8 6E-08 1.3E-12 90.6 11.7 98 195-329 100-199 (241)
194 PF01564 Spermine_synth: Sperm 98.7 2.1E-07 4.5E-12 87.6 13.6 137 195-355 76-217 (246)
195 PRK01544 bifunctional N5-gluta 98.7 1.6E-07 3.4E-12 97.2 13.1 137 195-353 347-484 (506)
196 PF04816 DUF633: Family of unk 98.7 4.6E-07 1E-11 82.9 14.5 119 199-352 1-119 (205)
197 KOG2912 Predicted DNA methylas 98.7 8.7E-07 1.9E-11 84.4 15.2 204 160-369 65-288 (419)
198 PF06080 DUF938: Protein of un 98.6 7.9E-07 1.7E-11 80.8 14.4 140 198-365 28-200 (204)
199 KOG1500 Protein arginine N-met 98.6 1.5E-07 3.3E-12 90.1 9.9 79 192-275 174-252 (517)
200 COG3129 Predicted SAM-dependen 98.6 1.3E-07 2.7E-12 86.5 8.7 121 158-279 37-166 (292)
201 PRK00050 16S rRNA m(4)C1402 me 98.6 1.4E-07 3.1E-12 90.7 8.5 92 178-276 6-100 (296)
202 PF03291 Pox_MCEL: mRNA cappin 98.6 4.6E-07 1E-11 88.8 12.0 123 195-344 62-198 (331)
203 COG0030 KsgA Dimethyladenosine 98.6 3.3E-07 7E-12 86.3 10.4 89 180-278 19-107 (259)
204 PF01739 CheR: CheR methyltran 98.6 4.4E-07 9.6E-12 82.5 10.8 128 177-329 13-175 (196)
205 KOG0820 Ribosomal RNA adenine 98.6 3.1E-07 6.7E-12 85.9 9.8 91 178-278 45-135 (315)
206 COG0357 GidB Predicted S-adeno 98.6 1.8E-06 3.9E-11 79.3 14.2 161 172-367 43-208 (215)
207 PLN02232 ubiquinone biosynthes 98.5 8.4E-07 1.8E-11 78.0 11.2 117 224-370 1-160 (160)
208 PF01728 FtsJ: FtsJ-like methy 98.5 1.8E-07 3.9E-12 83.5 6.8 143 195-369 23-179 (181)
209 PF01861 DUF43: Protein of unk 98.5 8.7E-06 1.9E-10 75.5 17.8 135 192-360 41-181 (243)
210 PRK00536 speE spermidine synth 98.5 4.4E-06 9.5E-11 79.2 16.2 182 146-369 25-214 (262)
211 PRK10742 putative methyltransf 98.5 7.5E-07 1.6E-11 83.2 10.8 80 198-280 91-178 (250)
212 COG0421 SpeE Spermidine syntha 98.5 1.8E-06 3.9E-11 82.6 13.5 110 195-329 76-190 (282)
213 COG1352 CheR Methylase of chem 98.5 9.9E-07 2.1E-11 83.8 11.1 127 177-329 79-241 (268)
214 KOG3010 Methyltransferase [Gen 98.5 2.8E-07 6.2E-12 84.9 7.0 99 198-327 36-135 (261)
215 PF06962 rRNA_methylase: Putat 98.4 2.4E-06 5.3E-11 73.1 10.9 115 222-353 1-121 (140)
216 KOG2671 Putative RNA methylase 98.4 3.1E-07 6.8E-12 88.3 5.9 131 193-329 206-354 (421)
217 PRK10611 chemotaxis methyltran 98.4 4.4E-07 9.4E-12 87.1 6.6 110 196-329 116-262 (287)
218 KOG1661 Protein-L-isoaspartate 98.3 4E-06 8.6E-11 75.9 10.5 103 195-330 82-194 (237)
219 KOG2361 Predicted methyltransf 98.3 9.1E-07 2E-11 81.6 6.5 105 197-328 73-182 (264)
220 KOG1975 mRNA cap methyltransfe 98.3 4.1E-06 8.9E-11 80.2 11.0 122 196-344 118-249 (389)
221 COG0293 FtsJ 23S rRNA methylas 98.3 1.1E-05 2.4E-10 73.4 12.3 137 195-364 45-190 (205)
222 COG4262 Predicted spermidine s 98.3 1.1E-05 2.5E-10 78.3 12.4 192 147-369 243-450 (508)
223 PF00398 RrnaAD: Ribosomal RNA 98.2 5.6E-06 1.2E-10 78.6 10.0 91 177-277 16-108 (262)
224 PF13578 Methyltransf_24: Meth 98.2 9.4E-07 2E-11 71.8 3.6 101 200-328 1-104 (106)
225 COG2384 Predicted SAM-dependen 98.2 5.3E-05 1.2E-09 69.3 14.8 120 197-351 18-137 (226)
226 TIGR03439 methyl_EasF probable 98.2 3E-05 6.5E-10 75.6 13.8 138 167-330 51-198 (319)
227 PF05219 DREV: DREV methyltran 98.2 1.9E-05 4.1E-10 74.1 11.2 92 195-327 94-186 (265)
228 PF05148 Methyltransf_8: Hypot 98.2 1.9E-05 4.2E-10 71.8 10.8 126 180-361 60-187 (219)
229 KOG1122 tRNA and rRNA cytosine 98.2 5.7E-05 1.2E-09 74.8 14.8 167 192-366 238-409 (460)
230 PF05891 Methyltransf_PK: AdoM 98.1 1.1E-05 2.5E-10 73.8 8.4 132 195-357 55-201 (218)
231 COG3963 Phospholipid N-methylt 98.1 3.6E-05 7.8E-10 67.4 10.8 124 174-331 31-158 (194)
232 COG4076 Predicted RNA methylas 98.1 6.3E-06 1.4E-10 73.4 5.6 69 197-272 34-102 (252)
233 TIGR00478 tly hemolysin TlyA f 98.1 1E-05 2.3E-10 75.2 7.4 40 194-235 74-113 (228)
234 PF11599 AviRa: RRNA methyltra 98.0 8.1E-05 1.7E-09 67.8 12.2 117 194-327 50-212 (246)
235 PF09243 Rsm22: Mitochondrial 98.0 6.8E-05 1.5E-09 71.7 12.3 68 176-243 14-81 (274)
236 KOG4589 Cell division protein 98.0 5.8E-05 1.3E-09 67.3 10.6 136 195-361 69-212 (232)
237 PF13679 Methyltransf_32: Meth 98.0 3.9E-05 8.4E-10 65.9 9.2 96 175-272 5-105 (141)
238 TIGR00497 hsdM type I restrict 98.0 6.8E-05 1.5E-09 77.7 12.3 153 167-329 195-355 (501)
239 PF03059 NAS: Nicotianamine sy 98.0 0.00018 3.9E-09 68.6 14.0 149 195-371 120-272 (276)
240 TIGR01444 fkbM_fam methyltrans 98.0 3.2E-05 6.9E-10 65.9 7.9 59 198-258 1-59 (143)
241 PF08123 DOT1: Histone methyla 97.9 3.6E-05 7.8E-10 70.5 8.4 80 193-273 40-129 (205)
242 COG0275 Predicted S-adenosylme 97.9 0.00034 7.3E-09 66.9 14.5 90 178-273 10-103 (314)
243 PF01269 Fibrillarin: Fibrilla 97.9 0.0017 3.6E-08 59.8 18.4 148 177-356 56-211 (229)
244 COG3897 Predicted methyltransf 97.9 4.2E-05 9.2E-10 68.6 7.4 73 192-272 76-148 (218)
245 KOG3201 Uncharacterized conser 97.8 2.2E-05 4.9E-10 68.3 4.2 151 174-358 12-166 (201)
246 TIGR00006 S-adenosyl-methyltra 97.8 0.00013 2.8E-09 70.6 9.4 90 178-274 7-100 (305)
247 PF02005 TRM: N2,N2-dimethylgu 97.8 8.6E-05 1.9E-09 74.1 8.4 104 196-329 50-154 (377)
248 cd00315 Cyt_C5_DNA_methylase C 97.7 0.00092 2E-08 64.0 14.2 75 198-281 2-77 (275)
249 KOG3045 Predicted RNA methylas 97.6 0.00025 5.4E-09 66.3 8.8 107 195-352 180-286 (325)
250 PF11968 DUF3321: Putative met 97.6 0.00034 7.4E-09 64.0 9.0 137 175-357 31-181 (219)
251 COG0500 SmtA SAM-dependent met 97.5 0.0022 4.8E-08 52.1 11.7 102 199-330 52-156 (257)
252 KOG3115 Methyltransferase-like 97.5 0.0004 8.7E-09 62.8 7.3 128 197-343 62-197 (249)
253 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.5 0.0013 2.8E-08 62.2 11.1 138 193-357 54-239 (256)
254 COG1867 TRM1 N2,N2-dimethylgua 97.4 0.00096 2.1E-08 65.4 10.3 102 196-329 53-154 (380)
255 PF07669 Eco57I: Eco57I restri 97.4 0.00043 9.3E-09 56.6 6.8 65 266-344 2-71 (106)
256 KOG1709 Guanidinoacetate methy 97.4 0.0014 3.1E-08 59.8 10.3 105 195-329 101-206 (271)
257 PF04989 CmcI: Cephalosporin h 97.4 0.0002 4.3E-09 65.3 4.3 136 174-345 18-180 (206)
258 KOG2940 Predicted methyltransf 97.3 0.00032 6.9E-09 64.5 5.5 111 196-338 73-183 (325)
259 KOG2198 tRNA cytosine-5-methyl 97.3 0.0042 9.1E-08 61.0 13.5 167 192-365 152-334 (375)
260 PRK11524 putative methyltransf 97.3 0.00051 1.1E-08 66.0 7.1 84 249-343 9-93 (284)
261 PF07942 N2227: N2227-like pro 97.3 0.0029 6.4E-08 60.2 12.0 129 195-356 56-241 (270)
262 PRK13699 putative methylase; P 97.2 0.0013 2.9E-08 61.1 8.2 88 249-351 2-90 (227)
263 KOG3178 Hydroxyindole-O-methyl 97.0 0.002 4.4E-08 62.8 7.3 97 197-329 179-275 (342)
264 PRK11760 putative 23S rRNA C24 97.0 0.011 2.5E-07 57.9 12.4 68 194-273 210-277 (357)
265 COG1568 Predicted methyltransf 96.9 0.0091 2E-07 56.5 10.9 123 192-344 149-277 (354)
266 COG1889 NOP1 Fibrillarin-like 96.9 0.024 5.2E-07 51.5 13.1 147 176-355 58-212 (231)
267 KOG3987 Uncharacterized conser 96.9 0.00017 3.8E-09 65.3 -0.6 93 195-327 112-205 (288)
268 KOG1269 SAM-dependent methyltr 96.9 0.0018 3.8E-08 64.4 5.8 105 195-328 110-214 (364)
269 PF04672 Methyltransf_19: S-ad 96.8 0.008 1.7E-07 57.0 9.5 123 197-344 70-209 (267)
270 PF03141 Methyltransf_29: Puta 96.8 0.0014 3E-08 66.7 4.5 126 167-331 90-221 (506)
271 PF01795 Methyltransf_5: MraW 96.8 0.0012 2.7E-08 63.9 3.9 90 178-274 7-101 (310)
272 PF00145 DNA_methylase: C-5 cy 96.7 0.012 2.6E-07 56.7 10.6 74 198-281 2-76 (335)
273 KOG4058 Uncharacterized conser 96.7 0.0045 9.7E-08 53.4 6.3 80 174-259 55-134 (199)
274 PF01555 N6_N4_Mtase: DNA meth 96.7 0.0057 1.2E-07 55.5 7.3 59 172-238 173-231 (231)
275 PRK11524 putative methyltransf 96.6 0.0072 1.6E-07 58.1 8.0 62 172-241 190-251 (284)
276 PF04445 SAM_MT: Putative SAM- 96.6 0.0091 2E-07 55.6 8.2 79 197-278 77-163 (234)
277 KOG1253 tRNA methyltransferase 96.5 0.0022 4.8E-08 64.9 3.7 105 195-329 109-216 (525)
278 PF10354 DUF2431: Domain of un 96.5 0.067 1.5E-06 47.4 12.6 138 202-356 3-151 (166)
279 PRK13699 putative methylase; P 96.4 0.01 2.2E-07 55.2 7.5 65 172-244 145-209 (227)
280 COG1189 Predicted rRNA methyla 96.4 0.023 5.1E-07 52.8 9.2 98 193-327 77-176 (245)
281 KOG0822 Protein kinase inhibit 96.3 0.01 2.2E-07 60.7 7.1 75 196-272 368-445 (649)
282 KOG1501 Arginine N-methyltrans 96.3 0.0066 1.4E-07 60.7 5.6 58 197-256 68-125 (636)
283 PRK01747 mnmC bifunctional tRN 96.3 0.033 7.2E-07 59.7 11.4 141 196-368 58-237 (662)
284 COG4798 Predicted methyltransf 96.2 0.065 1.4E-06 48.4 11.0 114 195-330 48-167 (238)
285 KOG1099 SAM-dependent methyltr 96.1 0.015 3.2E-07 53.7 6.4 124 197-358 43-188 (294)
286 PF07091 FmrO: Ribosomal RNA m 96.1 0.02 4.4E-07 53.7 7.4 73 195-272 105-177 (251)
287 COG5459 Predicted rRNA methyla 96.0 0.026 5.6E-07 55.2 7.8 130 191-344 109-244 (484)
288 PHA01634 hypothetical protein 96.0 0.034 7.4E-07 46.9 7.5 72 194-272 27-98 (156)
289 PF03141 Methyltransf_29: Puta 95.9 0.017 3.8E-07 58.9 6.7 135 197-370 367-506 (506)
290 COG0270 Dcm Site-specific DNA 95.8 0.042 9.1E-07 53.9 8.9 77 197-281 4-82 (328)
291 COG4301 Uncharacterized conser 95.5 0.34 7.3E-06 45.5 12.9 138 167-330 54-194 (321)
292 PF05430 Methyltransf_30: S-ad 95.5 0.041 8.9E-07 46.3 6.5 93 248-371 32-124 (124)
293 PF10237 N6-adenineMlase: Prob 95.5 0.32 6.9E-06 42.9 12.3 121 176-342 12-135 (162)
294 KOG2793 Putative N2,N2-dimethy 95.4 0.48 1E-05 44.7 13.7 120 196-344 87-215 (248)
295 KOG2798 Putative trehalase [Ca 95.3 0.14 3.1E-06 49.5 9.9 38 194-234 149-186 (369)
296 TIGR00675 dcm DNA-methyltransf 95.3 0.28 6.1E-06 47.8 12.3 73 199-280 1-73 (315)
297 KOG1331 Predicted methyltransf 95.2 0.022 4.8E-07 54.2 4.1 102 196-333 46-147 (293)
298 COG1064 AdhP Zn-dependent alco 95.0 0.092 2E-06 51.6 8.1 93 192-329 163-259 (339)
299 COG2961 ComJ Protein involved 94.9 0.7 1.5E-05 43.4 12.9 118 200-350 93-215 (279)
300 KOG1227 Putative methyltransfe 94.8 0.016 3.6E-07 55.4 2.2 73 196-272 195-268 (351)
301 PF01555 N6_N4_Mtase: DNA meth 94.7 0.049 1.1E-06 49.3 5.0 56 267-332 1-59 (231)
302 PF07279 DUF1442: Protein of u 94.2 1.1 2.4E-05 41.2 12.5 76 195-272 41-121 (218)
303 KOG1596 Fibrillarin and relate 93.7 0.38 8.3E-06 45.0 8.5 106 193-329 154-261 (317)
304 PRK10458 DNA cytosine methylas 93.5 0.58 1.2E-05 48.2 10.4 81 196-281 88-184 (467)
305 KOG1562 Spermidine synthase [A 93.5 0.18 3.8E-06 48.5 6.1 114 193-329 119-236 (337)
306 COG1565 Uncharacterized conser 93.4 0.36 7.9E-06 47.7 8.3 66 177-243 60-132 (370)
307 PTZ00357 methyltransferase; Pr 93.3 0.3 6.5E-06 51.9 8.0 75 198-272 703-798 (1072)
308 KOG2078 tRNA modification enzy 93.3 0.041 8.9E-07 55.1 1.7 63 195-260 249-312 (495)
309 PF02636 Methyltransf_28: Puta 93.2 0.25 5.5E-06 46.4 6.8 47 196-242 19-72 (252)
310 PF05711 TylF: Macrocin-O-meth 93.2 0.51 1.1E-05 44.5 8.7 126 196-352 75-233 (248)
311 KOG3350 Uncharacterized conser 93.2 2.2 4.8E-05 38.1 12.0 160 133-343 21-185 (217)
312 COG4889 Predicted helicase [Ge 93.0 0.56 1.2E-05 51.2 9.4 164 195-364 845-1056(1518)
313 PRK09424 pntA NAD(P) transhydr 92.5 0.88 1.9E-05 47.4 10.1 44 193-238 162-206 (509)
314 PF07757 AdoMet_MTase: Predict 92.4 0.23 5E-06 40.7 4.5 33 195-230 58-90 (112)
315 PF03686 UPF0146: Uncharacteri 92.2 0.32 7E-06 40.9 5.4 65 196-275 14-80 (127)
316 KOG3924 Putative protein methy 91.9 0.44 9.6E-06 47.5 6.7 95 177-273 175-279 (419)
317 PF00107 ADH_zinc_N: Zinc-bind 91.6 0.15 3.3E-06 42.1 2.8 88 205-330 1-90 (130)
318 KOG0024 Sorbitol dehydrogenase 91.2 0.77 1.7E-05 44.8 7.4 46 192-238 166-212 (354)
319 KOG2352 Predicted spermine/spe 91.0 1.5 3.3E-05 44.9 9.7 110 198-329 51-161 (482)
320 KOG2360 Proliferation-associat 90.8 0.76 1.6E-05 45.7 7.0 88 193-281 211-299 (413)
321 PF03492 Methyltransf_7: SAM d 90.1 3.8 8.3E-05 40.3 11.5 133 194-330 15-184 (334)
322 cd08283 FDH_like_1 Glutathione 89.6 0.96 2.1E-05 45.0 7.0 45 194-239 183-228 (386)
323 KOG2352 Predicted spermine/spe 89.5 0.43 9.3E-06 48.8 4.4 129 196-343 296-432 (482)
324 COG3510 CmcI Cephalosporin hyd 89.4 1.7 3.6E-05 39.5 7.5 120 195-345 69-210 (237)
325 PF04378 RsmJ: Ribosomal RNA s 89.4 0.39 8.5E-06 45.2 3.7 76 200-281 62-140 (245)
326 COG1063 Tdh Threonine dehydrog 89.3 0.86 1.9E-05 45.0 6.3 43 195-238 168-211 (350)
327 PRK09880 L-idonate 5-dehydroge 89.3 1.3 2.9E-05 43.1 7.6 43 195-238 169-212 (343)
328 PRK08594 enoyl-(acyl carrier p 88.5 5.2 0.00011 37.3 10.8 79 195-277 6-98 (257)
329 PF05050 Methyltransf_21: Meth 88.4 1.3 2.7E-05 37.9 6.0 56 201-256 1-61 (167)
330 PF06460 NSP13: Coronavirus NS 88.4 8.3 0.00018 36.6 11.6 139 193-368 59-206 (299)
331 KOG2651 rRNA adenine N-6-methy 88.1 1.6 3.5E-05 43.4 7.1 41 196-238 154-194 (476)
332 PRK07533 enoyl-(acyl carrier p 88.0 5.6 0.00012 37.0 10.6 80 195-277 9-99 (258)
333 KOG1201 Hydroxysteroid 17-beta 87.7 5.2 0.00011 38.7 10.1 87 192-284 34-132 (300)
334 PRK06079 enoyl-(acyl carrier p 87.3 7.7 0.00017 35.9 11.1 78 195-277 6-94 (252)
335 PF02254 TrkA_N: TrkA-N domain 87.0 1.8 3.9E-05 35.0 5.9 61 204-272 4-68 (116)
336 PRK09242 tropinone reductase; 86.9 9.4 0.0002 35.1 11.4 82 195-277 8-99 (257)
337 PRK05867 short chain dehydroge 86.8 5.8 0.00013 36.5 10.0 81 195-278 8-98 (253)
338 cd08254 hydroxyacyl_CoA_DH 6-h 86.2 3.5 7.7E-05 39.4 8.4 43 194-238 164-207 (338)
339 PF06859 Bin3: Bicoid-interact 86.1 0.074 1.6E-06 43.7 -2.8 27 305-331 20-46 (110)
340 PRK07063 short chain dehydroge 85.8 11 0.00024 34.7 11.3 81 195-276 6-96 (260)
341 PRK06940 short chain dehydroge 85.6 4.8 0.0001 37.9 8.9 75 198-276 4-86 (275)
342 PRK07326 short chain dehydroge 84.9 9.2 0.0002 34.6 10.1 75 196-274 6-90 (237)
343 PRK08415 enoyl-(acyl carrier p 84.9 13 0.00028 35.1 11.4 79 196-277 5-94 (274)
344 KOG2920 Predicted methyltransf 84.8 1.2 2.5E-05 42.7 4.1 55 176-233 98-152 (282)
345 PRK06914 short chain dehydroge 83.7 18 0.00039 33.7 11.8 80 197-277 4-92 (280)
346 PRK07523 gluconate 5-dehydroge 83.0 10 0.00022 34.9 9.7 81 195-278 9-99 (255)
347 PRK15057 UDP-glucose 6-dehydro 82.7 17 0.00038 36.5 11.8 141 205-369 7-162 (388)
348 PRK06603 enoyl-(acyl carrier p 82.7 15 0.00032 34.2 10.8 80 195-277 7-97 (260)
349 PRK15001 SAM-dependent 23S rib 82.6 20 0.00044 35.9 12.1 109 176-328 32-141 (378)
350 TIGR02822 adh_fam_2 zinc-bindi 82.5 7.6 0.00016 37.7 9.0 44 193-238 163-207 (329)
351 PRK07984 enoyl-(acyl carrier p 82.1 13 0.00029 34.7 10.2 80 195-277 5-95 (262)
352 PRK06949 short chain dehydroge 82.1 21 0.00046 32.6 11.5 79 195-276 8-96 (258)
353 cd05188 MDR Medium chain reduc 81.9 4 8.7E-05 37.3 6.5 43 194-238 133-176 (271)
354 PRK07576 short chain dehydroge 81.8 21 0.00045 33.2 11.4 78 195-275 8-95 (264)
355 PF13561 adh_short_C2: Enoyl-( 81.7 2.9 6.2E-05 38.4 5.4 117 203-329 1-133 (241)
356 PRK07062 short chain dehydroge 81.5 22 0.00047 32.8 11.4 82 195-277 7-98 (265)
357 PRK08159 enoyl-(acyl carrier p 81.5 19 0.00041 33.9 11.0 80 195-277 9-99 (272)
358 COG0863 DNA modification methy 81.4 6.3 0.00014 37.4 7.8 47 194-243 221-267 (302)
359 PRK05876 short chain dehydroge 81.3 19 0.00042 33.8 11.1 81 195-278 5-95 (275)
360 PRK12384 sorbitol-6-phosphate 80.8 15 0.00033 33.7 10.0 81 197-278 3-93 (259)
361 cd08281 liver_ADH_like1 Zinc-d 80.7 6.3 0.00014 38.8 7.8 43 194-238 190-234 (371)
362 PRK08251 short chain dehydroge 80.5 18 0.00039 32.9 10.3 80 197-277 3-92 (248)
363 PRK07889 enoyl-(acyl carrier p 80.5 10 0.00022 35.2 8.8 78 195-277 6-96 (256)
364 cd08230 glucose_DH Glucose deh 80.4 6.4 0.00014 38.4 7.7 42 195-238 172-217 (355)
365 PRK08945 putative oxoacyl-(acy 80.3 7.8 0.00017 35.4 7.9 80 195-276 11-102 (247)
366 PRK05786 fabG 3-ketoacyl-(acyl 80.3 21 0.00046 32.2 10.7 76 196-275 5-90 (238)
367 PRK06124 gluconate 5-dehydroge 80.2 25 0.00055 32.1 11.3 80 195-277 10-99 (256)
368 PRK07067 sorbitol dehydrogenas 80.0 22 0.00047 32.7 10.8 76 196-277 6-91 (257)
369 PRK07109 short chain dehydroge 79.6 19 0.00042 35.0 10.8 79 196-277 8-96 (334)
370 KOG4174 Uncharacterized conser 79.4 13 0.00028 35.2 8.7 123 196-329 57-190 (282)
371 PRK07097 gluconate 5-dehydroge 79.4 30 0.00065 32.0 11.6 81 195-278 9-99 (265)
372 PRK08324 short chain dehydroge 79.0 14 0.00031 39.9 10.4 80 195-278 421-510 (681)
373 PRK08267 short chain dehydroge 78.9 17 0.00037 33.4 9.7 76 198-278 3-89 (260)
374 PRK06500 short chain dehydroge 78.9 22 0.00047 32.3 10.3 77 196-278 6-92 (249)
375 PRK07370 enoyl-(acyl carrier p 78.8 14 0.00031 34.3 9.2 80 195-277 5-98 (258)
376 PRK12481 2-deoxy-D-gluconate 3 78.7 22 0.00048 32.7 10.4 79 195-278 7-95 (251)
377 TIGR03451 mycoS_dep_FDH mycoth 78.3 5.4 0.00012 39.0 6.4 43 194-238 175-219 (358)
378 PRK07666 fabG 3-ketoacyl-(acyl 78.1 21 0.00046 32.3 10.0 79 196-277 7-95 (239)
379 PF00106 adh_short: short chai 78.1 14 0.00029 31.4 8.2 85 198-285 2-99 (167)
380 PRK08213 gluconate 5-dehydroge 78.0 17 0.00037 33.4 9.4 80 195-277 11-100 (259)
381 TIGR01202 bchC 2-desacetyl-2-h 77.8 11 0.00023 36.2 8.2 43 195-238 144-187 (308)
382 PRK05599 hypothetical protein; 77.4 15 0.00032 33.8 8.8 78 198-277 2-88 (246)
383 PRK06125 short chain dehydroge 77.3 32 0.0007 31.6 11.1 81 196-278 7-93 (259)
384 PRK08643 acetoin reductase; Va 77.2 38 0.00083 30.9 11.5 79 197-278 3-91 (256)
385 PRK08339 short chain dehydroge 76.9 32 0.0007 32.0 11.0 79 195-275 7-94 (263)
386 PRK08085 gluconate 5-dehydroge 76.7 35 0.00076 31.2 11.1 79 196-277 9-97 (254)
387 PF02086 MethyltransfD12: D12 76.6 4.4 9.6E-05 37.6 5.0 52 179-237 8-59 (260)
388 PRK06505 enoyl-(acyl carrier p 76.5 29 0.00062 32.6 10.6 79 195-276 6-95 (271)
389 PRK07677 short chain dehydroge 76.5 27 0.00057 32.0 10.2 76 197-275 2-87 (252)
390 cd08232 idonate-5-DH L-idonate 76.0 15 0.00033 35.2 8.8 42 195-238 165-208 (339)
391 PRK08589 short chain dehydroge 75.7 34 0.00073 31.9 10.8 79 195-277 5-93 (272)
392 KOG2782 Putative SAM dependent 75.6 3.2 7E-05 38.4 3.6 66 170-240 22-87 (303)
393 PLN02353 probable UDP-glucose 75.4 30 0.00064 35.8 11.1 64 305-368 103-177 (473)
394 PRK05872 short chain dehydroge 75.3 28 0.0006 33.1 10.3 80 195-278 8-97 (296)
395 PRK12744 short chain dehydroge 75.3 38 0.00083 31.0 11.0 79 195-276 7-99 (257)
396 KOG1098 Putative SAM-dependent 75.1 2.8 6.2E-05 44.2 3.4 136 195-363 44-188 (780)
397 PRK07806 short chain dehydroge 75.1 65 0.0014 29.2 12.6 119 195-329 5-134 (248)
398 PRK07454 short chain dehydroge 75.0 28 0.00061 31.5 9.9 79 196-277 6-94 (241)
399 KOG0725 Reductases with broad 75.0 33 0.00071 32.7 10.5 125 195-329 7-149 (270)
400 PRK09072 short chain dehydroge 74.9 29 0.00064 32.0 10.1 79 196-278 5-92 (263)
401 COG0863 DNA modification methy 74.7 8.7 0.00019 36.4 6.6 92 249-344 17-113 (302)
402 COG0338 Dam Site-specific DNA 74.5 12 0.00027 35.8 7.5 84 249-344 157-240 (274)
403 PF12242 Eno-Rase_NADH_b: NAD( 74.3 18 0.00039 27.8 6.7 37 194-230 37-74 (78)
404 PRK07831 short chain dehydroge 74.1 33 0.0007 31.6 10.2 82 195-277 16-108 (262)
405 PRK08265 short chain dehydroge 74.1 32 0.0007 31.8 10.2 77 195-277 5-91 (261)
406 PRK12824 acetoacetyl-CoA reduc 74.1 37 0.0008 30.6 10.4 78 198-278 4-92 (245)
407 PRK08862 short chain dehydroge 74.0 35 0.00075 31.2 10.2 78 195-275 4-92 (227)
408 cd08293 PTGR2 Prostaglandin re 73.8 15 0.00034 35.3 8.2 40 197-238 156-198 (345)
409 PRK08703 short chain dehydroge 73.8 18 0.0004 32.8 8.3 80 195-276 5-97 (239)
410 PRK07904 short chain dehydroge 73.4 16 0.00034 33.9 7.9 80 195-276 7-97 (253)
411 PRK12826 3-ketoacyl-(acyl-carr 73.2 30 0.00064 31.3 9.6 80 196-278 6-95 (251)
412 PLN03154 putative allyl alcoho 73.0 16 0.00036 35.7 8.2 43 193-237 156-200 (348)
413 PRK07791 short chain dehydroge 72.9 42 0.00092 31.7 10.9 80 195-277 5-103 (286)
414 PRK05854 short chain dehydroge 72.6 30 0.00066 33.2 9.9 81 195-276 13-103 (313)
415 PLN02740 Alcohol dehydrogenase 72.5 10 0.00022 37.6 6.7 44 193-238 196-241 (381)
416 TIGR01963 PHB_DH 3-hydroxybuty 72.2 33 0.00071 31.1 9.7 76 198-276 3-88 (255)
417 KOG2539 Mitochondrial/chloropl 72.0 14 0.00031 37.8 7.5 51 192-242 197-248 (491)
418 PF02558 ApbA: Ketopantoate re 71.8 6.3 0.00014 33.4 4.4 101 205-343 5-115 (151)
419 COG0604 Qor NADPH:quinone redu 71.8 15 0.00033 35.9 7.6 97 194-329 141-241 (326)
420 PRK06701 short chain dehydroge 71.7 48 0.0011 31.4 11.0 80 195-277 45-135 (290)
421 cd08294 leukotriene_B4_DH_like 71.5 18 0.00038 34.5 8.0 43 194-238 142-186 (329)
422 PRK06139 short chain dehydroge 71.3 35 0.00076 33.3 10.1 80 195-277 6-95 (330)
423 PRK07102 short chain dehydroge 71.3 33 0.00071 31.2 9.4 78 198-277 3-87 (243)
424 PRK15182 Vi polysaccharide bio 70.9 65 0.0014 32.8 12.2 39 197-237 7-45 (425)
425 PRK06172 short chain dehydroge 70.8 24 0.00051 32.3 8.4 80 195-277 6-95 (253)
426 cd08239 THR_DH_like L-threonin 69.6 17 0.00036 35.0 7.4 43 194-238 162-206 (339)
427 PRK12859 3-ketoacyl-(acyl-carr 69.6 64 0.0014 29.6 11.1 82 195-278 5-108 (256)
428 PRK07832 short chain dehydroge 69.6 43 0.00093 31.1 10.0 77 199-277 3-89 (272)
429 COG1743 Adenine-specific DNA m 69.5 10 0.00022 41.2 6.0 92 265-357 488-616 (875)
430 COG1255 Uncharacterized protei 69.5 17 0.00037 30.2 6.1 62 196-272 14-76 (129)
431 PRK06128 oxidoreductase; Provi 69.5 53 0.0011 31.2 10.7 124 195-328 54-190 (300)
432 PRK06997 enoyl-(acyl carrier p 69.2 46 0.00099 30.9 10.0 80 195-277 5-95 (260)
433 PRK05565 fabG 3-ketoacyl-(acyl 68.8 39 0.00085 30.4 9.3 80 196-278 5-95 (247)
434 cd05278 FDH_like Formaldehyde 68.8 23 0.0005 34.0 8.2 43 195-238 167-210 (347)
435 PF05063 MT-A70: MT-A70 ; Int 68.7 18 0.0004 31.9 6.8 73 267-354 1-74 (176)
436 TIGR02825 B4_12hDH leukotriene 68.5 34 0.00074 32.7 9.2 42 194-237 137-180 (325)
437 PF05869 Dam: DNA N-6-adenine- 68.4 11 0.00025 33.7 5.4 11 268-278 65-75 (181)
438 PRK05717 oxidoreductase; Valid 67.9 47 0.001 30.4 9.8 77 195-277 9-95 (255)
439 PF11899 DUF3419: Protein of u 67.4 14 0.0003 37.1 6.4 46 193-241 33-78 (380)
440 PRK08217 fabG 3-ketoacyl-(acyl 67.2 34 0.00073 31.0 8.6 80 195-277 4-93 (253)
441 PLN02253 xanthoxin dehydrogena 67.2 27 0.00059 32.5 8.1 78 195-276 17-104 (280)
442 COG0677 WecC UDP-N-acetyl-D-ma 67.0 8.6 0.00019 38.7 4.6 118 197-344 10-144 (436)
443 TIGR02632 RhaD_aldol-ADH rhamn 66.8 77 0.0017 34.3 12.4 82 195-277 413-504 (676)
444 TIGR00027 mthyl_TIGR00027 meth 66.5 84 0.0018 29.7 11.2 107 197-330 83-198 (260)
445 PLN02989 cinnamyl-alcohol dehy 66.4 19 0.00041 34.5 7.0 79 196-275 5-86 (325)
446 cd08255 2-desacetyl-2-hydroxye 66.3 47 0.001 30.7 9.5 43 194-238 96-140 (277)
447 KOG0023 Alcohol dehydrogenase, 66.1 10 0.00022 37.2 4.9 47 195-246 181-228 (360)
448 PLN02827 Alcohol dehydrogenase 66.1 15 0.00032 36.5 6.3 45 193-238 191-236 (378)
449 PRK07774 short chain dehydroge 65.8 34 0.00075 31.0 8.4 79 196-277 6-94 (250)
450 PRK12939 short chain dehydroge 65.7 64 0.0014 29.1 10.1 78 196-276 7-94 (250)
451 PRK10904 DNA adenine methylase 65.5 29 0.00064 33.0 8.0 82 248-343 157-238 (271)
452 PRK05653 fabG 3-ketoacyl-(acyl 65.5 72 0.0016 28.5 10.3 80 196-278 5-94 (246)
453 TIGR03206 benzo_BadH 2-hydroxy 65.1 65 0.0014 29.1 10.0 80 196-278 3-92 (250)
454 PRK06200 2,3-dihydroxy-2,3-dih 65.0 92 0.002 28.6 11.2 77 195-277 5-91 (263)
455 PRK12743 oxidoreductase; Provi 64.7 78 0.0017 29.0 10.6 78 197-277 3-91 (256)
456 TIGR01832 kduD 2-deoxy-D-gluco 64.6 85 0.0018 28.4 10.8 79 195-278 4-92 (248)
457 PRK07035 short chain dehydroge 64.6 55 0.0012 29.8 9.5 79 196-277 8-96 (252)
458 PRK07985 oxidoreductase; Provi 64.5 62 0.0014 30.7 10.1 79 195-276 48-138 (294)
459 TIGR02415 23BDH acetoin reduct 64.3 1.1E+02 0.0024 27.6 11.8 80 198-280 2-91 (254)
460 PRK05650 short chain dehydroge 64.2 50 0.0011 30.6 9.2 78 198-278 2-89 (270)
461 PRK08226 short chain dehydroge 64.2 99 0.0021 28.3 11.2 81 195-279 5-95 (263)
462 PRK06182 short chain dehydroge 63.9 48 0.001 30.8 9.0 75 196-279 3-87 (273)
463 PRK12746 short chain dehydroge 63.8 58 0.0012 29.6 9.5 79 196-277 6-101 (254)
464 PRK06197 short chain dehydroge 63.8 56 0.0012 31.0 9.7 81 195-276 15-105 (306)
465 PRK05225 ketol-acid reductoiso 63.5 20 0.00044 36.9 6.6 122 195-362 35-185 (487)
466 PRK05855 short chain dehydroge 63.5 73 0.0016 32.9 11.2 79 196-277 315-403 (582)
467 PRK06138 short chain dehydroge 63.2 59 0.0013 29.4 9.4 79 196-278 5-93 (252)
468 PRK12935 acetoacetyl-CoA reduc 63.2 94 0.002 28.1 10.7 80 196-278 6-96 (247)
469 cd08285 NADP_ADH NADP(H)-depen 63.2 35 0.00075 33.0 8.2 44 194-238 165-209 (351)
470 COG1748 LYS9 Saccharopine dehy 63.1 16 0.00034 36.9 5.7 75 197-278 2-81 (389)
471 TIGR00006 S-adenosyl-methyltra 63.1 9 0.00019 37.3 4.0 42 303-344 214-255 (305)
472 PRK08993 2-deoxy-D-gluconate 3 62.8 85 0.0018 28.7 10.4 78 195-277 9-96 (253)
473 PF01795 Methyltransf_5: MraW 62.3 8 0.00017 37.7 3.4 44 302-345 214-257 (310)
474 KOG0821 Predicted ribosomal RN 62.2 20 0.00042 33.5 5.7 62 193-258 48-109 (326)
475 PRK06194 hypothetical protein; 62.1 73 0.0016 29.7 10.0 79 196-277 6-94 (287)
476 cd08295 double_bond_reductase_ 62.1 43 0.00092 32.3 8.6 44 193-238 149-194 (338)
477 PRK06101 short chain dehydroge 61.9 95 0.0021 28.1 10.5 73 198-277 3-82 (240)
478 PRK05866 short chain dehydroge 61.8 53 0.0012 31.2 9.1 77 196-275 40-126 (293)
479 PRK05993 short chain dehydroge 61.6 79 0.0017 29.5 10.1 73 197-278 5-88 (277)
480 PRK07792 fabG 3-ketoacyl-(acyl 61.4 90 0.0019 29.8 10.6 79 195-277 11-100 (306)
481 PLN03209 translocon at the inn 61.4 41 0.00089 35.7 8.7 79 195-274 79-167 (576)
482 PRK06935 2-deoxy-D-gluconate 3 61.3 70 0.0015 29.3 9.6 80 195-278 14-103 (258)
483 cd08261 Zn_ADH7 Alcohol dehydr 61.0 20 0.00044 34.4 6.1 42 194-237 158-200 (337)
484 cd08234 threonine_DH_like L-th 60.9 32 0.00069 32.8 7.4 42 194-237 158-201 (334)
485 PRK09291 short chain dehydroge 60.8 71 0.0015 29.0 9.5 78 197-277 3-84 (257)
486 TIGR00571 dam DNA adenine meth 60.8 37 0.00081 32.1 7.7 82 248-343 155-236 (266)
487 PRK09186 flagellin modificatio 60.5 56 0.0012 29.7 8.7 78 196-274 4-91 (256)
488 PF05206 TRM13: Methyltransfer 60.5 21 0.00047 33.8 5.9 36 195-230 18-57 (259)
489 PRK00050 16S rRNA m(4)C1402 me 59.8 12 0.00025 36.4 4.1 42 303-344 210-251 (296)
490 KOG1209 1-Acyl dihydroxyaceton 59.7 29 0.00063 32.3 6.3 73 195-274 6-89 (289)
491 cd08296 CAD_like Cinnamyl alco 59.7 44 0.00096 32.1 8.2 42 195-238 163-205 (333)
492 PF03269 DUF268: Caenorhabditi 59.6 7.3 0.00016 34.4 2.4 108 197-330 3-112 (177)
493 cd03420 SirA_RHOD_Pry_redox Si 59.6 52 0.0011 24.3 6.8 52 312-367 16-67 (69)
494 PRK06720 hypothetical protein; 59.4 60 0.0013 28.4 8.3 80 195-277 15-104 (169)
495 cd08245 CAD Cinnamyl alcohol d 59.3 51 0.0011 31.3 8.6 42 194-237 161-203 (330)
496 KOG0919 C-5 cytosine-specific 59.0 9.2 0.0002 36.0 3.0 80 196-280 3-83 (338)
497 PRK06484 short chain dehydroge 59.0 88 0.0019 32.1 10.8 75 196-276 269-353 (520)
498 PRK07478 short chain dehydroge 59.0 69 0.0015 29.2 9.1 79 196-277 6-94 (254)
499 PRK07231 fabG 3-ketoacyl-(acyl 58.8 64 0.0014 29.1 8.8 78 196-277 5-92 (251)
500 PF02153 PDH: Prephenate dehyd 58.7 34 0.00074 32.2 7.0 108 209-362 1-108 (258)
No 1
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=3.9e-49 Score=362.22 Aligned_cols=296 Identities=35% Similarity=0.501 Sum_probs=250.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCC-CCcccccccCCcccccc-CchHH
Q 017476 56 PPKYSATLSDLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDP-SLIPQLGFQNNSQSVRL-RIGLD 133 (371)
Q Consensus 56 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~-~~~~~~~~~~~~~~~~l-~~~~~ 133 (371)
.|.|.++.+.|..|..|+.....+...+ .+.+..|+..|++... +++.. .. .+.+| ...++
T Consensus 26 ~p~hat~~sal~~~~~W~~~l~~~~~e~------------~k~~~~~i~shvL~~Kf~si~d--s~---~~~pl~~~ql~ 88 (328)
T KOG2904|consen 26 TPSHATSLSALELLLPWTRTLEQAGEES------------SKLSYKWIVSHVLPDKFWSIED--SI---VDDPLVILQLE 88 (328)
T ss_pred CCccCccchhhHhhchHHHHHHHhcCch------------hhhhhHHHHHhhhhhhhccccc--hh---hccccchhHHH
Confidence 4788899999999999997664432221 1256789999999866 11111 11 12234 34678
Q ss_pred HHHHHHHHHhhcCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHH
Q 017476 134 ELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGI 213 (371)
Q Consensus 134 ~~~~~~~~r~~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~l 213 (371)
.+++.|.+|.+ +.|+|||+|+++|.++++.+.|+|||||||||.+++++++.+ .+.....+..|||+|||||++++.+
T Consensus 89 ~i~~~~~~R~~-r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~-~~~~~~~~~~ildlgtGSGaIslsl 166 (328)
T KOG2904|consen 89 SIRWACLQRYK-RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDAL-NNSEHSKHTHILDLGTGSGAISLSL 166 (328)
T ss_pred HHHHHHHHHHh-cCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHH-hhhhhcccceEEEecCCccHHHHHH
Confidence 88899988866 899999999999999999999999999999999999999988 5555556678999999999999999
Q ss_pred HHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE----EcCcccccccCCCceeEEEEcCCCCCCCCcccchhhh
Q 017476 214 ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR----QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEV 289 (371)
Q Consensus 214 a~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~----~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev 289 (371)
+..+ +..+|+|||.|+.|+.+|.+|++++++.+++.++ ++|++++.+...+++|+++||||||..+++..+.++|
T Consensus 167 l~~L-~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV 245 (328)
T KOG2904|consen 167 LHGL-PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEV 245 (328)
T ss_pred HhcC-CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchh
Confidence 9998 6899999999999999999999999999998887 6788777666679999999999999999999999999
Q ss_pred cccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cHHHHHHHHhccccCCceeEEEEecCCCCceEEEE
Q 017476 290 GKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368 (371)
Q Consensus 290 ~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a 368 (371)
+.|||.+||+||.+|++.+..++..+.++|+|||++.+|.++.. ....+..++.......+..+.++.|++|++||++.
T Consensus 246 ~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i 325 (328)
T KOG2904|consen 246 RLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVII 325 (328)
T ss_pred eecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEE
Confidence 99999999999999999999999999999999999999996444 34455666665545668899999999999999999
Q ss_pred EeC
Q 017476 369 FRQ 371 (371)
Q Consensus 369 ~~~ 371 (371)
+|.
T Consensus 326 ~r~ 328 (328)
T KOG2904|consen 326 HRI 328 (328)
T ss_pred EeC
Confidence 874
No 2
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=100.00 E-value=1e-47 Score=368.07 Aligned_cols=281 Identities=33% Similarity=0.440 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhc
Q 017476 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK 145 (371)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 145 (371)
+.++++|+......++.. +. ...|+++|+++++++++....+. .+..++.+..+.++.+.+|+.+
T Consensus 3 ~~~~~~~~~~~l~~~~~~--------~~--~~~~a~~ll~~~l~~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~r~~ 67 (284)
T TIGR00536 3 IQEALRWASSALSRAIAR--------EN--PWLEALLLLLHDLGRERDLLLAF-----LTEELTPDEKERIFRLVLRRVK 67 (284)
T ss_pred HHHHHHHHHHHHHHCCCC--------CC--HHHHHHHHHHHHHCcCHHHHhhc-----cCCCCCHHHHHHHHHHHHHHHc
Confidence 456777776665433321 00 13699999999999885433211 1235676667778888889999
Q ss_pred CCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEE
Q 017476 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (371)
Q Consensus 146 ~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~g 225 (371)
++|+|||+|..+|++++|.|++++|+|||+||.+++.+++.+... .+..+|||+|||+|++++.++..+ ++.+|+|
T Consensus 68 ~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~---~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~a 143 (284)
T TIGR00536 68 GVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKALASLISQ---NPILHILDLGTGSGCIALALAYEF-PNAEVIA 143 (284)
T ss_pred CCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhc---CCCCEEEEEeccHhHHHHHHHHHC-CCCEEEE
Confidence 999999999999999999999999999999999999988765111 122589999999999999999985 7789999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcH
Q 017476 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305 (371)
Q Consensus 226 vDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl 305 (371)
+|+|+++++.|++|++.+++.++++++++|+++.+.. .+||+||+||||++..+...+ +++..|||..||+||.||+
T Consensus 144 vDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPPyi~~~~~~~~-~~~~~~eP~~AL~gg~dgl 220 (284)
T TIGR00536 144 VDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPPYIDEEDLADL-PNVVRFEPLLALVGGDDGL 220 (284)
T ss_pred EECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCCCCCcchhhcC-CcccccCcHHHhcCCCcHH
Confidence 9999999999999999999877799999999886542 489999999999999887666 7778899999999999999
Q ss_pred HHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476 306 DYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ 371 (371)
Q Consensus 306 ~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~ 371 (371)
+.++.+++.+.++|+|||++++|+ +..|.+.+.+++... .+|..+++++|++|++|++++++.
T Consensus 221 ~~~~~ii~~a~~~L~~gG~l~~e~-g~~q~~~~~~~~~~~--~~~~~~~~~~D~~g~~R~~~~~~~ 283 (284)
T TIGR00536 221 NILRQIIELAPDYLKPNGFLVCEI-GNWQQKSLKELLRIK--FTWYDVENGRDLNGKERVVLGFYH 283 (284)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEE-CccHHHHHHHHHHhc--CCCceeEEecCCCCCceEEEEEec
Confidence 999999999999999999999999 678999999999842 679999999999999999999863
No 3
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-47 Score=363.75 Aligned_cols=274 Identities=34% Similarity=0.453 Sum_probs=232.6
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhh
Q 017476 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (371)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~ 144 (371)
++.+|++|+.+++..++ . ++ ..+++.++.+.++.++.... ......+..+..+.+..+..|+.
T Consensus 2 ~~~~~l~~a~~~l~~~~-~---~~--------~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~rr~ 64 (280)
T COG2890 2 TIRQALREAVSRLSAAG-G---TP--------NLDAELLLLHLLGKPRDQLL-----AHPEAELSEEELERLRELLERRA 64 (280)
T ss_pred cHHHHHHHHHHHHHhcC-C---CC--------cccHHHHHHHHhCCCHHHHh-----hccccccCHHHHHHHHHHHHHHH
Confidence 68899999998888776 1 11 14677888888887543222 11123455444555555556669
Q ss_pred cCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (371)
Q Consensus 145 ~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~ 224 (371)
+++|+|||+|..+|++++|.|+++|++|||+||.+++.++... ... .. +|||+|||||++++.++++. +.++|+
T Consensus 65 ~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l~~~-~~~---~~-~ilDlGTGSG~iai~la~~~-~~~~V~ 138 (280)
T COG2890 65 EGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAALALL-LQL---DK-RILDLGTGSGAIAIALAKEG-PDAEVI 138 (280)
T ss_pred CCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHHHhh-hhc---CC-cEEEecCChHHHHHHHHhhC-cCCeEE
Confidence 9999999999999999999999999999999999999987433 111 11 79999999999999999986 788999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCc
Q 017476 225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG 304 (371)
Q Consensus 225 gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dG 304 (371)
|+|+|+.|++.|++|+..+|+ .++.++++||++.+. ++||+|||||||++.. ...+.+++.+|||..||.+|.||
T Consensus 139 a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~---~~fDlIVsNPPYip~~-~~~~~~~~~~~EP~~Al~~g~dG 213 (280)
T COG2890 139 AVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR---GKFDLIVSNPPYIPAE-DPELLPEVVRYEPLLALVGGGDG 213 (280)
T ss_pred EEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC---CceeEEEeCCCCCCCc-ccccChhhhccCHHHHHccCccH
Confidence 999999999999999999999 568888889998776 4999999999999998 67788899999999999999999
Q ss_pred HHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCC-ceeEEEEecCCCCceEEEEEe
Q 017476 305 LDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACS-FCNVSIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 305 l~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~g-f~~v~~~~Dl~g~~R~~~a~~ 370 (371)
++.+++++..+.++|+|||++++|+ +..|.+.|.+++.+ .+ |..+.+++|++|.+|++.+++
T Consensus 214 l~~~~~i~~~a~~~l~~~g~l~le~-g~~q~~~v~~~~~~---~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 214 LEVYRRILGEAPDILKPGGVLILEI-GLTQGEAVKALFED---TGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHHHHhhHHHcCCCcEEEEEE-CCCcHHHHHHHHHh---cCCceEEEEEecCCCceEEEEEEe
Confidence 9999999999999999999999999 78999999999997 45 888999999999999999876
No 4
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=100.00 E-value=1.6e-47 Score=392.35 Aligned_cols=281 Identities=28% Similarity=0.382 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhc
Q 017476 66 LKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEK 145 (371)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~ 145 (371)
+.++++|+......++.. . ...|++||++++++++.....+ + .+..++.+..+.++.+.+||.+
T Consensus 5 ~~~~l~~~~~~l~~~g~~---------~--~~~~a~~Ll~~~l~~~~~~l~~----~-~~~~l~~~~~~~~~~~~~rr~~ 68 (506)
T PRK01544 5 IKQILSDATDKLNKIGIS---------S--PQLEARILLQHVINKPIEYLLI----N-LDEQLNEAEIEAFEKLLERRLK 68 (506)
T ss_pred HHHHHHHHHHHHHHcCCC---------C--HHHHHHHHHHHHHCcCHHHHhh----c-cCCCCCHHHHHHHHHHHHHHHc
Confidence 566777776665544321 1 1368999999999987533321 1 1235666666778888899999
Q ss_pred CCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhc-------------------C-CCCCCCeEEEECCc
Q 017476 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD-------------------N-DGLRDGFWVDLGTG 205 (371)
Q Consensus 146 ~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~-------------------~-~~~~~~~VLDlG~G 205 (371)
|+|+|||+|+++|++++|.|+++||||||+||.+++.+++.+... . ...++.+|||+|||
T Consensus 69 ~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~G 148 (506)
T PRK01544 69 HEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTG 148 (506)
T ss_pred CCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCc
Confidence 999999999999999999999999999999999999998765210 0 01134689999999
Q ss_pred ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccc
Q 017476 206 SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGL 285 (371)
Q Consensus 206 sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l 285 (371)
||++++.+++.+ ++.+|+|+|+|+.+++.|++|++.+++.++++++++|+++.+. .++||+|||||||++..+...+
T Consensus 149 sG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~~~~~~l 225 (506)
T PRK01544 149 SGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEM 225 (506)
T ss_pred hhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--CCCccEEEECCCCCCchhhhhc
Confidence 999999999886 7889999999999999999999999988889999999987654 3589999999999999888888
Q ss_pred hhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceE
Q 017476 286 QVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRF 365 (371)
Q Consensus 286 ~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~ 365 (371)
..++..|||..||+||.||++.|+.+++.+.++|+|||++++|+ +..|.+.+.+++.+ .||..+++++|++|++||
T Consensus 226 ~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~~q~~~v~~~~~~---~g~~~~~~~~D~~g~~R~ 301 (506)
T PRK01544 226 AIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GFKQEEAVTQIFLD---HGYNIESVYKDLQGHSRV 301 (506)
T ss_pred CchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CCchHHHHHHHHHh---cCCCceEEEecCCCCceE
Confidence 89999999999999999999999999999999999999999999 78899999999986 679999999999999999
Q ss_pred EEEE
Q 017476 366 VTGF 369 (371)
Q Consensus 366 ~~a~ 369 (371)
+++-
T Consensus 302 v~~~ 305 (506)
T PRK01544 302 ILIS 305 (506)
T ss_pred EEec
Confidence 9763
No 5
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=364.16 Aligned_cols=255 Identities=32% Similarity=0.435 Sum_probs=220.9
Q ss_pred HHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhcCCceeeEeecccccceeeEeeCCcccccchH
Q 017476 97 FRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPET 176 (371)
Q Consensus 97 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~t 176 (371)
..|+++|++++++.++....+ + .+..++.+..+.+..+.+||.+|+|+|||+|+++|++++|.|++++|+|||+|
T Consensus 164 ~~dA~~LL~~~l~~~r~~l~~----~-~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeT 238 (423)
T PRK14966 164 KNEARMLLQYASEYTRVQLLT----R-GGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPET 238 (423)
T ss_pred HHHHHHHHHHHHCcCHHHHhh----C-CcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccH
Confidence 368999999999987533221 1 12356766777788888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (371)
Q Consensus 177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~ 256 (371)
|.+++.+++.+ . ++.+|||+|||+|++++.+++.. ++.+|+|+|+|+.|++.|++|++.++. +++++++|+
T Consensus 239 E~LVe~aL~~l-~-----~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl 309 (423)
T PRK14966 239 EHLVEAVLARL-P-----ENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA--RVEFAHGSW 309 (423)
T ss_pred HHHHHHhhhcc-C-----CCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence 99999998765 1 24589999999999999999875 788999999999999999999998875 599999999
Q ss_pred ccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHH
Q 017476 257 FGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCK 336 (371)
Q Consensus 257 ~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~ 336 (371)
++......++||+|+|||||++..+...++. +.+|||+.||+||+||++.|+.+++.+.++|+|||++++|+ +.+|.+
T Consensus 310 ~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~-~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G~~Q~e 387 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPYIENGDKHLLQG-DLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-GFDQGA 387 (423)
T ss_pred hccccccCCCccEEEECCCCCCcchhhhcch-hhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-CccHHH
Confidence 7653212358999999999999877544444 44799999999999999999999999999999999999999 789999
Q ss_pred HHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476 337 FLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 337 ~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~ 370 (371)
.+.+++++ .||..+++++|++|++|++.+++
T Consensus 388 ~V~~ll~~---~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 388 AVRGVLAE---NGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred HHHHHHHH---CCCcEEEEEEcCCCCcEEEEEEE
Confidence 99999986 67999999999999999999876
No 6
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=1.7e-41 Score=327.85 Aligned_cols=286 Identities=28% Similarity=0.391 Sum_probs=226.6
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhcccccc-CCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHH
Q 017476 58 KYSATLSDLKKWHNWAKALASSVRSTFA-DSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELY 136 (371)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 136 (371)
+++..+.++.++.+|+......++..+. +.++ ...|++||++++++.++....+ . .+..++.+..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~a~~ll~~~l~~~~~~l~~----~-~~~~l~~~~~~~~ 76 (307)
T PRK11805 8 EAVNELHTIRDLLRWAVSRFNAAGLFFGHGTDN------AWDEAVQLVLHALHLPLDIPEP----F-LDARLTPSEKARI 76 (307)
T ss_pred cchhhhhHHHHHHHHHHHHHHhcCCccCCCCCC------HHHHHHHHHHHHHCcCHHHHhh----c-ccCCCCHHHHHHH
Confidence 4456677888899998777654433211 1111 1368999999999987533321 1 1235666666777
Q ss_pred HHHHHHhh-cCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHH
Q 017476 137 GLWKQRIE-KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIAR 215 (371)
Q Consensus 137 ~~~~~r~~-~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~ 215 (371)
..+.+||. +++|+|||+|+++|++++|.|+++|||||++|+.+++.++...... ..+.+|||+|||+|++++.+++
T Consensus 77 ~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~---~~~~~VLDlG~GsG~iai~la~ 153 (307)
T PRK11805 77 LELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLED---PPVTRILDLCTGSGCIAIACAY 153 (307)
T ss_pred HHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhcc---CCCCEEEEEechhhHHHHHHHH
Confidence 77788886 6999999999999999999999999999999999999876532111 1135899999999999999999
Q ss_pred HhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCcc
Q 017476 216 VLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPR 295 (371)
Q Consensus 216 ~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~ 295 (371)
.+ ++.+|+|+|+|+.+++.|++|++.+++.++++++++|+++.++ .++||+|++||||++..++..+..++ .|||.
T Consensus 154 ~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~-~~eP~ 229 (307)
T PRK11805 154 AF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEY-RHEPE 229 (307)
T ss_pred HC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCCCCCccchhhcCHhh-ccCcc
Confidence 85 7889999999999999999999999988889999999987654 25899999999999998888888888 59999
Q ss_pred ccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEE
Q 017476 296 LALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTG 368 (371)
Q Consensus 296 ~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a 368 (371)
.||+||.+|++.++.+++.+.++|+|||++++|+ +..|. .+.+++.+ .+|.-.+. ...|..+|+..
T Consensus 230 ~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~-g~~~~-~~~~~~~~---~~~~~~~~--~~~~~~~~~~~ 295 (307)
T PRK11805 230 LALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV-GNSRV-HLEEAYPD---VPFTWLEF--ENGGDGVFLLT 295 (307)
T ss_pred ceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE-CcCHH-HHHHHHhh---CCCEEEEe--cCCCceEEEEE
Confidence 9999999999999999999999999999999999 45565 58888875 44544333 33555555543
No 7
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=100.00 E-value=2.8e-41 Score=323.38 Aligned_cols=265 Identities=30% Similarity=0.420 Sum_probs=213.7
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhh
Q 017476 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (371)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~ 144 (371)
++.++++|+......++..+. .+.++ ...|++||++++++.++....+ . .+..++.+..+.+..+.+||.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~---~~~~~--~~~~a~~ll~~~l~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~rr~ 72 (284)
T TIGR03533 3 TIRDFLRWAVSRFNAAGLFFG---HGTDN--AWDEAVYLVLHALHLPLDILEP----F-LDARLTPSEKERILELIERRI 72 (284)
T ss_pred cHHHHHHHHHHHHHhcCCccc---CCCCC--HHHHHHHHHHHHHCcCHHHHhh----c-ccCCCCHHHHHHHHHHHHHHH
Confidence 456677777666554332110 00011 1368999999999987543321 1 123566666666777777876
Q ss_pred -cCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEE
Q 017476 145 -KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSI 223 (371)
Q Consensus 145 -~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V 223 (371)
+++|+|||+|+++|++++|.|+++||+||++|+.+++..+..... ...+.+|||+|||+|++++.+++.. ++.+|
T Consensus 73 ~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~---~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v 148 (284)
T TIGR03533 73 EERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLE---PEPVKRILDLCTGSGCIAIACAYAF-PEAEV 148 (284)
T ss_pred hCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhc---cCCCCEEEEEeCchhHHHHHHHHHC-CCCEE
Confidence 799999999999999999999999999999999999987753211 1234689999999999999999985 77899
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCC
Q 017476 224 IAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVD 303 (371)
Q Consensus 224 ~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~d 303 (371)
+|+|+|+.+++.|++|++.+++.++++++++|+++.++ .++||+|++||||++..++..++.++ .|||..|++||.+
T Consensus 149 ~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~-~~ep~~al~gg~d 225 (284)
T TIGR03533 149 DAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEY-HHEPELALASGED 225 (284)
T ss_pred EEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECCCCCCccchhhCCHhh-hcCHHHHhcCCCc
Confidence 99999999999999999999998789999999987654 25799999999999998888888887 6999999999999
Q ss_pred cHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476 304 GLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC 351 (371)
Q Consensus 304 Gl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~ 351 (371)
|++.++.+++.+.++|+|||++++|+ +..| +.+++++.+ .+|.
T Consensus 226 Gl~~~~~il~~a~~~L~~gG~l~~e~-g~~~-~~v~~~~~~---~~~~ 268 (284)
T TIGR03533 226 GLDLVRRILAEAADHLNENGVLVVEV-GNSM-EALEEAYPD---VPFT 268 (284)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEE-CcCH-HHHHHHHHh---CCCc
Confidence 99999999999999999999999999 4566 689999885 4563
No 8
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=6.7e-41 Score=318.26 Aligned_cols=273 Identities=37% Similarity=0.503 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHhhhccccccCCCCCCCccchHHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhh
Q 017476 65 DLKKWHNWAKALASSVRSTFADSDNGPDSSILFRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIE 144 (371)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~ 144 (371)
++.++.+|+...... ...|+++|++++++.+.....+. .+..++.+..+.+..+..|+.
T Consensus 3 ~~~~~~~~~~~~l~~----------------~~~~~~~ll~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 61 (275)
T PRK09328 3 TIAEALREATARLAS----------------PRLDAELLLAHVLGLSRTDLLLN-----PEEELTPEELERFRALVARRA 61 (275)
T ss_pred cHHHHHHHHHHHHhC----------------cHHHHHHHHHHHHCcCHHHHhhc-----ccCCCCHHHHHHHHHHHHHHH
Confidence 356777887665431 13689999999999875333211 122344444455666667778
Q ss_pred cCCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476 145 KRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (371)
Q Consensus 145 ~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~ 224 (371)
+++|++|++|..+|++..|.+++++++||++|+.+++.+.... ...++.+|||+|||+|.+++.++..+ +..+|+
T Consensus 62 ~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~ 136 (275)
T PRK09328 62 AGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKER-PDAEVT 136 (275)
T ss_pred cCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEE
Confidence 9999999999999999999999999999999999999988554 22345689999999999999999986 778999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCc
Q 017476 225 AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDG 304 (371)
Q Consensus 225 gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dG 304 (371)
|+|+|+.+++.|++|+. ++...+++++.+|+++... .++||+|++||||++......+.+++..|||..++++|.+|
T Consensus 137 ~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g 213 (275)
T PRK09328 137 AVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDG 213 (275)
T ss_pred EEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCH
Confidence 99999999999999998 4444569999999987654 36899999999999988888888999899999999999999
Q ss_pred HHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476 305 LDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 305 l~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~ 370 (371)
++.++.+++.+.++|+|||++++|+ +..|.+.+.+++++ .||..+++++|++|++|++++++
T Consensus 214 ~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~~~~~~~~~l~~---~gf~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 214 LDFYRRIIEQAPRYLKPGGWLLLEI-GYDQGEAVRALLAA---AGFADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred HHHHHHHHHHHHHhcccCCEEEEEE-CchHHHHHHHHHHh---CCCceeEEecCCCCCceEEEEEC
Confidence 9999999999999999999999999 67899999999985 78999999999999999999864
No 9
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=100.00 E-value=7e-39 Score=301.63 Aligned_cols=228 Identities=30% Similarity=0.482 Sum_probs=198.2
Q ss_pred HHHHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhcCCceeeEeecccccceeeEeeCCcccccchH
Q 017476 97 FRELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPET 176 (371)
Q Consensus 97 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~t 176 (371)
..|++||++++.. ...+..|.+||.+++|+|||+|.++|++++|.+++++|+||++|
T Consensus 14 ~~~a~~l~~~~~~-----------------------~~~~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~T 70 (251)
T TIGR03704 14 EDEAALLVDAART-----------------------PGELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRT 70 (251)
T ss_pred HHHHHHHHHhccC-----------------------HHHHHHHHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccH
Confidence 3899999999731 24466777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (371)
Q Consensus 177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~ 256 (371)
+.+++.++..+ .. ...+.+|||+|||+|.+++.+++.+ ++.+|+|+|+|+.+++.|++|+..++ ++++++|+
T Consensus 71 e~Lv~~~l~~~-~~--~~~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~ 142 (251)
T TIGR03704 71 EFLVDEAAALA-RP--RSGTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG----GTVHEGDL 142 (251)
T ss_pred HHHHHHHHHhh-cc--cCCCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeec
Confidence 99999998865 21 1123589999999999999999875 67799999999999999999998876 47899999
Q ss_pred cccccc-CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcH
Q 017476 257 FGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQC 335 (371)
Q Consensus 257 ~~~l~~-~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~ 335 (371)
++.+.. ..++||+||+||||++...+..+++++.+|||..+|+||.||++.++.+++.+.++|+|||++++++ +.+|.
T Consensus 143 ~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~-~~~~~ 221 (251)
T TIGR03704 143 YDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET-SERQA 221 (251)
T ss_pred hhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE-CcchH
Confidence 876532 2357999999999999988888899999999999999999999999999999999999999999999 57899
Q ss_pred HHHHHHHhccccCCc-eeEEEEecC
Q 017476 336 KFLKNYLENDSACSF-CNVSIVSDF 359 (371)
Q Consensus 336 ~~v~~~l~~~~~~gf-~~v~~~~Dl 359 (371)
..+..++++ .|| ..+..++|+
T Consensus 222 ~~v~~~l~~---~g~~~~~~~~~~~ 243 (251)
T TIGR03704 222 PLAVEAFAR---AGLIARVASSEEL 243 (251)
T ss_pred HHHHHHHHH---CCCCceeeEcccc
Confidence 999999986 455 467778887
No 10
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=100.00 E-value=2.4e-35 Score=275.96 Aligned_cols=251 Identities=37% Similarity=0.554 Sum_probs=217.7
Q ss_pred HHHHHHHhccCCCCCcccccccCCccccccCchHHHHHHHHHHHhhcCCceeeEeecccccceeeEeeCCcccccchHHH
Q 017476 99 ELNWLVEDSLEDPSLIPQLGFQNNSQSVRLRIGLDELYGLWKQRIEKRKPFQYLVGCEHWRDLVLSVEEGVFIPRPETEL 178 (371)
Q Consensus 99 e~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~ 178 (371)
|+++|+++.++........ . ....+.....+.+..+.+++.+++|++|++|..+|++..|.+++++++|+++++.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 75 (251)
T TIGR03534 1 DAELLLAHVLGKDRTDLLL----H-PEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEE 75 (251)
T ss_pred CHHHHHHHHHCcCHHHHhh----c-ccCCCCHHHHHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHH
Confidence 4678999999976421111 0 1234555556667777788889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (371)
Q Consensus 179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~ 258 (371)
+++.+++.+ . ..+.+|||+|||+|.++..+++.+ +..+++|+|+++.+++.|++|+..+++. +++++++|+.+
T Consensus 76 l~~~~l~~~-~----~~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~ 148 (251)
T TIGR03534 76 LVEAALERL-K----KGPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE 148 (251)
T ss_pred HHHHHHHhc-c----cCCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence 999988876 2 134589999999999999999975 7789999999999999999999999886 59999999987
Q ss_pred ccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHH
Q 017476 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFL 338 (371)
Q Consensus 259 ~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v 338 (371)
... .++||+|++||||+...+...+..++..|||..++.+|.+|+..+..+++.+.++|+|||++++++ +..+.+.+
T Consensus 149 ~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~~~~~~~ 225 (251)
T TIGR03534 149 PLP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GYDQGEAV 225 (251)
T ss_pred cCc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-CccHHHHH
Confidence 553 378999999999999888888888898999999999999999999999999999999999999999 67899999
Q ss_pred HHHHhccccCCceeEEEEecCCCCceEEE
Q 017476 339 KNYLENDSACSFCNVSIVSDFAGIQRFVT 367 (371)
Q Consensus 339 ~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~ 367 (371)
.+++++ .||..+++++|+.|.+|+++
T Consensus 226 ~~~l~~---~gf~~v~~~~d~~~~~r~~~ 251 (251)
T TIGR03534 226 RALFEA---AGFADVETRKDLAGKDRVVL 251 (251)
T ss_pred HHHHHh---CCCCceEEEeCCCCCcCeeC
Confidence 999986 68999999999999999974
No 11
>PLN02672 methionine S-methyltransferase
Probab=100.00 E-value=4.7e-33 Score=301.48 Aligned_cols=197 Identities=23% Similarity=0.297 Sum_probs=170.7
Q ss_pred eecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 017476 153 VGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (371)
Q Consensus 153 ~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~a 232 (371)
.|.++|++++|.|+|+||||||+||.+++. +... . ....++.+|||+|||+|++++.+++++ +..+|+|+|+|++|
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~-~-~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~A 154 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRH-P-DSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRA 154 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhc-c-cccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHH
Confidence 588999999999999999999999999998 4332 1 111235689999999999999999986 67899999999999
Q ss_pred HHHHHHHHHHcCCC---------------CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCc---
Q 017476 233 AAVAAFNAQRYGLQ---------------DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEP--- 294 (371)
Q Consensus 233 l~~A~~n~~~~gl~---------------~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep--- 294 (371)
++.|++|++.++++ ++++++++|+++.+....++||+||||||||+..++..++++|..|||
T Consensus 155 l~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~ 234 (1082)
T PLN02672 155 VKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEF 234 (1082)
T ss_pred HHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccc
Confidence 99999999987542 479999999998764322479999999999999999999999988875
Q ss_pred ------cccccC---CCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHH-HHHhccccCCceeEEEEe
Q 017476 295 ------RLALDG---GVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLK-NYLENDSACSFCNVSIVS 357 (371)
Q Consensus 295 ------~~aL~g---g~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~-~~l~~~~~~gf~~v~~~~ 357 (371)
..||+| |.|||+.|+++++.+.++|+|||++++|+ |.+|++.|. +++++ .||..+++++
T Consensus 235 ~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi-G~~q~~~v~~~l~~~---~gf~~~~~~~ 303 (1082)
T PLN02672 235 LYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM-GGRPGQAVCERLFER---RGFRITKLWQ 303 (1082)
T ss_pred ccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE-CccHHHHHHHHHHHH---CCCCeeEEee
Confidence 689987 49999999999999999999999999999 789999999 69986 6798877765
No 12
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.91 E-value=5.3e-23 Score=182.73 Aligned_cols=161 Identities=37% Similarity=0.586 Sum_probs=126.4
Q ss_pred eeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 161 LVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 161 ~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
++|...+|||.|+ +.|+.|++.+... ..++|||+|||+|.+++.+++.. +..+|+++|+|+.|++.|+
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~ 72 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAK 72 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHH
Confidence 5788999999954 5788888877654 25689999999999999999974 7889999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (371)
Q Consensus 238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~ 317 (371)
+|++.+++++ ++++.+|+++.+. .++||+|+||||+.. ++.+|++.++.+++.+.+
T Consensus 73 ~n~~~n~~~~-v~~~~~d~~~~~~--~~~fD~Iv~NPP~~~---------------------~~~~~~~~~~~~i~~a~~ 128 (170)
T PF05175_consen 73 RNAERNGLEN-VEVVQSDLFEALP--DGKFDLIVSNPPFHA---------------------GGDDGLDLLRDFIEQARR 128 (170)
T ss_dssp HHHHHTTCTT-EEEEESSTTTTCC--TTCEEEEEE---SBT---------------------TSHCHHHHHHHHHHHHHH
T ss_pred HHHHhcCccc-ccccccccccccc--ccceeEEEEccchhc---------------------ccccchhhHHHHHHHHHH
Confidence 9999999988 9999999998776 479999999999532 334578889999999999
Q ss_pred ccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCC
Q 017476 318 MLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAG 361 (371)
Q Consensus 318 ~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g 361 (371)
+|+|||.+++........+.+ +++ .|..+++...-.|
T Consensus 129 ~Lk~~G~l~lv~~~~~~~~~~---l~~----~f~~~~~~~~~~~ 165 (170)
T PF05175_consen 129 YLKPGGRLFLVINSHLGYERL---LKE----LFGDVEVVAKNKG 165 (170)
T ss_dssp HEEEEEEEEEEEETTSCHHHH---HHH----HHS--EEEEEESS
T ss_pred hccCCCEEEEEeecCCChHHH---HHH----hcCCEEEEEECCC
Confidence 999999998887543333333 443 2667777665443
No 13
>PRK14967 putative methyltransferase; Provisional
Probab=99.88 E-value=3.3e-21 Score=178.41 Aligned_cols=175 Identities=29% Similarity=0.408 Sum_probs=142.5
Q ss_pred ccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 158 f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
+-+..+.+.+++|.|+.+++.+.+.+...- ..++.+|||+|||+|.+++.+++. ...+|+++|+|+.+++.|+
T Consensus 4 ~~~~~~~~~~g~~~p~~ds~~l~~~l~~~~-----~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~ 76 (223)
T PRK14967 4 TPPDALLRAPGVYRPQEDTQLLADALAAEG-----LGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSAR 76 (223)
T ss_pred CCCceeecCCCCcCCCCcHHHHHHHHHhcc-----cCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHH
Confidence 346788999999999999999888765431 224569999999999999999884 3459999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (371)
Q Consensus 238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~ 317 (371)
+|+..+++ ++.++.+|+.+.+. .++||+|++||||++..... .....|..++.++.+|...+..+++.+.+
T Consensus 77 ~n~~~~~~--~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 147 (223)
T PRK14967 77 LNALLAGV--DVDVRRGDWARAVE--FRPFDVVVSNPPYVPAPPDA-----PPSRGPARAWDAGPDGRAVLDRLCDAAPA 147 (223)
T ss_pred HHHHHhCC--eeEEEECchhhhcc--CCCeeEEEECCCCCCCCccc-----ccccChhHhhhCCCcHHHHHHHHHHHHHH
Confidence 99998886 38999999977543 36899999999998765422 22456777888899999999999999999
Q ss_pred ccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476 318 MLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC 351 (371)
Q Consensus 318 ~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~ 351 (371)
+|++||.+++......+...+.+.+++ .+|.
T Consensus 148 ~Lk~gG~l~~~~~~~~~~~~~~~~l~~---~g~~ 178 (223)
T PRK14967 148 LLAPGGSLLLVQSELSGVERTLTRLSE---AGLD 178 (223)
T ss_pred hcCCCcEEEEEEecccCHHHHHHHHHH---CCCC
Confidence 999999999987655566777777775 5663
No 14
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.87 E-value=1.2e-20 Score=168.69 Aligned_cols=163 Identities=23% Similarity=0.334 Sum_probs=129.4
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 017476 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI 248 (371)
Q Consensus 169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~ 248 (371)
||+||++|..+.+.+. .. ++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++|+..++. +
T Consensus 1 ~~~~~~d~~~l~~~l~-~~-------~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~ 67 (179)
T TIGR00537 1 VYEPAEDSLLLEANLR-EL-------KPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--G 67 (179)
T ss_pred CCCCCccHHHHHHHHH-hc-------CCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--c
Confidence 6899999977666543 22 34689999999999999999862 3899999999999999999998876 3
Q ss_pred EEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 249 v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
++++.+|+.+.. .++||+|++||||++..+.... ......++.+|.+|...+..+++.+.++|+|||.+++.
T Consensus 68 ~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 68 LDVVMTDLFKGV---RGKFDVILFNPPYLPLEDDLRR-----GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred eEEEEccccccc---CCcccEEEECCCCCCCcchhcc-----cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 899999987743 2589999999999865432110 11224567788889999999999999999999999998
Q ss_pred ECCcCcHHHHHHHHhccccCCceeEEE
Q 017476 329 TNGEKQCKFLKNYLENDSACSFCNVSI 355 (371)
Q Consensus 329 ~~~~~q~~~v~~~l~~~~~~gf~~v~~ 355 (371)
.....+...+.+.+++ .||....+
T Consensus 140 ~~~~~~~~~~~~~l~~---~gf~~~~~ 163 (179)
T TIGR00537 140 QSSLNGEPDTFDKLDE---RGFRYEIV 163 (179)
T ss_pred EeccCChHHHHHHHHh---CCCeEEEE
Confidence 8666668889999986 67844333
No 15
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.85 E-value=1.2e-20 Score=175.31 Aligned_cols=165 Identities=24% Similarity=0.350 Sum_probs=129.4
Q ss_pred ceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 017476 160 DLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (371)
Q Consensus 160 ~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n 239 (371)
.+.+..++.++-..-++-+|..++.. ...++|||+|||+|.+++.+|++. +.++|+|||+++++.+.|++|
T Consensus 17 ~~~I~q~~~~~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~n 87 (248)
T COG4123 17 QFFIIQDRCGFRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRN 87 (248)
T ss_pred ceEEEeCCCccccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHH
Confidence 44556666677777777777766432 126799999999999999999985 669999999999999999999
Q ss_pred HHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCc--ccchhhhcccCccccccCCCCcHHHHHHHHHHHh
Q 017476 240 AQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDI--SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316 (371)
Q Consensus 240 ~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~--~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~ 316 (371)
++.++++++++++++|+.+..+.. ..+||+|||||||...+.. ..-.....+||...- +..+++.+.
T Consensus 88 v~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~----------le~~i~~a~ 157 (248)
T COG4123 88 VALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLD----------LEDLIRAAA 157 (248)
T ss_pred HHhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCC----------HHHHHHHHH
Confidence 999999999999999987655443 2469999999999987665 222234445655433 448999999
Q ss_pred cccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 317 SMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 317 ~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
+.||+||.+++.+ ......++.+++++
T Consensus 158 ~~lk~~G~l~~V~-r~erl~ei~~~l~~ 184 (248)
T COG4123 158 KLLKPGGRLAFVH-RPERLAEIIELLKS 184 (248)
T ss_pred HHccCCCEEEEEe-cHHHHHHHHHHHHh
Confidence 9999999999999 45666777777775
No 16
>PRK14968 putative methyltransferase; Provisional
Probab=99.84 E-value=1.7e-19 Score=161.20 Aligned_cols=181 Identities=24% Similarity=0.412 Sum_probs=144.6
Q ss_pred eCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC
Q 017476 166 EEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL 245 (371)
Q Consensus 166 ~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl 245 (371)
++++|.|+.++..+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.+++|+..++.
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~ 70 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNI 70 (188)
T ss_pred CCcccCcchhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCC
Confidence 57899999999988887643 23568999999999999999985 47999999999999999999998887
Q ss_pred CCc-EEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcE
Q 017476 246 QDI-IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGF 324 (371)
Q Consensus 246 ~~~-v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~ 324 (371)
.++ +.++.+|+.+.+.. ++||+|++||||.+......... ....++.+|.+|...+..+++.+.++|+|||.
T Consensus 71 ~~~~~~~~~~d~~~~~~~--~~~d~vi~n~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 71 RNNGVEVIRSDLFEPFRG--DKFDVILFNPPYLPTEEEEEWDD-----WLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred CCcceEEEeccccccccc--cCceEEEECCCcCCCCchhhhhh-----hhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 655 89999999876543 48999999999987543222111 12346667888899999999999999999999
Q ss_pred EEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEE
Q 017476 325 FAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVT 367 (371)
Q Consensus 325 lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~ 367 (371)
+++.+......+.+.+++.+ .||..+.+.....+.+++.+
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~---~g~~~~~~~~~~~~~~~~~~ 183 (188)
T PRK14968 144 ILLLQSSLTGEDEVLEYLEK---LGFEAEVVAEEKFPFEELIV 183 (188)
T ss_pred EEEEEcccCCHHHHHHHHHH---CCCeeeeeeecccCCceEEE
Confidence 99998665667788888886 68977777666666666554
No 17
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.9e-19 Score=157.39 Aligned_cols=186 Identities=24% Similarity=0.373 Sum_probs=153.2
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 017476 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246 (371)
Q Consensus 167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~ 246 (371)
.+|+-|-.+|-+|+|.+.+.. .......+..++|+|||||..+..+++...+++...++|+|+.|++..++.++.|+..
T Consensus 16 ~dVYEPaEDTFlLlDaLekd~-~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~ 94 (209)
T KOG3191|consen 16 SDVYEPAEDTFLLLDALEKDA-AELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH 94 (209)
T ss_pred hhccCccchhhHHHHHHHHHH-HHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc
Confidence 378899999999999887765 3323334678999999999999999999888899999999999999999999998863
Q ss_pred CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA 326 (371)
Q Consensus 247 ~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv 326 (371)
+..++.|+.+.+.. ++.|+++.||||++..+-. +....-..++.||.+|.+...+++.+....|.|.|+++
T Consensus 95 --~~~V~tdl~~~l~~--~~VDvLvfNPPYVpt~~~~-----i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 95 --IDVVRTDLLSGLRN--ESVDVLVFNPPYVPTSDEE-----IGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred --cceeehhHHhhhcc--CCccEEEECCCcCcCCccc-----chhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 89999999988876 8999999999999986632 21222346788999999999999999999999999999
Q ss_pred EEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceE
Q 017476 327 FETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRF 365 (371)
Q Consensus 327 le~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~ 365 (371)
+..-.....+++.++++. .||....+..-..|.+-.
T Consensus 166 lv~~~~N~p~ei~k~l~~---~g~~~~~~~~Rk~~~E~l 201 (209)
T KOG3191|consen 166 LVALRANKPKEILKILEK---KGYGVRIAMQRKAGGETL 201 (209)
T ss_pred eeehhhcCHHHHHHHHhh---cccceeEEEEEecCCceE
Confidence 987666677788888885 678776666666665543
No 18
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=5.1e-19 Score=167.59 Aligned_cols=170 Identities=22% Similarity=0.378 Sum_probs=132.0
Q ss_pred cceeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476 159 RDLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (371)
Q Consensus 159 ~~~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~ 235 (371)
.++.|.-.||||.- -..|++|++.+... ...+|||+|||.|.+++.+++.. |..+++-+|+|..|++.
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~--------~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ 197 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLPPD--------LGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVES 197 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHHHHhCCcc--------CCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHH
Confidence 36788899999984 36678887765432 23489999999999999999985 89999999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315 (371)
Q Consensus 236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a 315 (371)
|++|+..|++++. .++.+|.++... ++||+|||||||....+.. .+.-.++++.|
T Consensus 198 ar~Nl~~N~~~~~-~v~~s~~~~~v~---~kfd~IisNPPfh~G~~v~---------------------~~~~~~~i~~A 252 (300)
T COG2813 198 ARKNLAANGVENT-EVWASNLYEPVE---GKFDLIISNPPFHAGKAVV---------------------HSLAQEIIAAA 252 (300)
T ss_pred HHHhHHHcCCCcc-EEEEeccccccc---ccccEEEeCCCccCCcchh---------------------HHHHHHHHHHH
Confidence 9999999998864 899999988765 4999999999997433211 23345899999
Q ss_pred hcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476 316 ASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 316 ~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~ 370 (371)
.++|++||.|.+..++.-.. ...|++ -|.++++..- .+.-++..++|
T Consensus 253 ~~~L~~gGeL~iVan~~l~y---~~~L~~----~Fg~v~~la~-~~gf~Vl~a~k 299 (300)
T COG2813 253 ARHLKPGGELWIVANRHLPY---EKKLKE----LFGNVEVLAK-NGGFKVLRAKK 299 (300)
T ss_pred HHhhccCCEEEEEEcCCCCh---HHHHHH----hcCCEEEEEe-CCCEEEEEEec
Confidence 99999999999999755443 445553 3777777763 34455555554
No 19
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.81 E-value=1.4e-18 Score=168.20 Aligned_cols=206 Identities=18% Similarity=0.255 Sum_probs=148.2
Q ss_pred cceee-EeeCCccccc-chHHHHHHHHHHHhhhcC----CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHH
Q 017476 159 RDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDN----DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA 232 (371)
Q Consensus 159 ~~~~~-~v~~~vliPr-p~te~lv~~~~~~~~~~~----~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~a 232 (371)
+++++ .+.++.|.|. |.--.++.++.+.+.... ......++||||||+|++...++... ++++++|+|+++.+
T Consensus 72 ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~A 150 (321)
T PRK11727 72 YGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQA 150 (321)
T ss_pred cCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHH
Confidence 46764 6888999986 767777777777762211 11235789999999999999998875 68899999999999
Q ss_pred HHHHHHHHHHc-CCCCcEEEEE-c---CcccccccCCCceeEEEEcCCCCCCCCcccc--hh---hhcccCcc---c---
Q 017476 233 AAVAAFNAQRY-GLQDIIEIRQ-G---SWFGKLKDVEGKLSGVVSNPPYIPSDDISGL--QV---EVGKHEPR---L--- 296 (371)
Q Consensus 233 l~~A~~n~~~~-gl~~~v~~~~-g---D~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l--~~---ev~~~ep~---~--- 296 (371)
++.|++|++.+ ++.++++++. . ++++.+....++||+|+|||||+........ .. ...+|.+. +
T Consensus 151 l~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~ 230 (321)
T PRK11727 151 LASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFG 230 (321)
T ss_pred HHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCc
Confidence 99999999999 8998898865 3 3333322224689999999999976553211 11 11222220 1
Q ss_pred ----c--ccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCC-CceEEEEE
Q 017476 297 ----A--LDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAG-IQRFVTGF 369 (371)
Q Consensus 297 ----a--L~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g-~~R~~~a~ 369 (371)
. -.||+ +.++..++++...+++..|++..-++.....+.+.+.|++ .|..++++..-..| +.|.++|+
T Consensus 231 g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~---~~~~~~~~~e~~qG~~~~~~vaW 305 (321)
T PRK11727 231 GQQAELWCEGGE--VAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKK---VGAVEVKTIEMAQGQKQSRFIAW 305 (321)
T ss_pred chhhheeeCCcE--eeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHH---cCCceEEEEEEeCCCeeeEEEEe
Confidence 1 13444 5788899999999999999998888777788889999986 67777777765545 55566776
Q ss_pred e
Q 017476 370 R 370 (371)
Q Consensus 370 ~ 370 (371)
.
T Consensus 306 s 306 (321)
T PRK11727 306 T 306 (321)
T ss_pred e
Confidence 3
No 20
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.80 E-value=2.4e-18 Score=170.27 Aligned_cols=139 Identities=19% Similarity=0.299 Sum_probs=110.5
Q ss_pred ceeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (371)
Q Consensus 160 ~~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A 236 (371)
++.+...++||-.. ..|+.+++.+.. ...++|||+|||+|.+++.+++.. |..+|+++|+|+.|++.|
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~--------~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A 268 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE--------NLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASS 268 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc--------ccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 56778889999964 447776665422 123589999999999999999985 889999999999999999
Q ss_pred HHHHHHcCCC--CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHH
Q 017476 237 AFNAQRYGLQ--DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG 314 (371)
Q Consensus 237 ~~n~~~~gl~--~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~ 314 (371)
++|++.++.. .+++++.+|.++.+.. ++||+|+|||||.....+ . .....+++..
T Consensus 269 ~~N~~~n~~~~~~~v~~~~~D~l~~~~~--~~fDlIlsNPPfh~~~~~---~------------------~~ia~~l~~~ 325 (378)
T PRK15001 269 RLNVETNMPEALDRCEFMINNALSGVEP--FRFNAVLCNPPFHQQHAL---T------------------DNVAWEMFHH 325 (378)
T ss_pred HHHHHHcCcccCceEEEEEccccccCCC--CCEEEEEECcCcccCccC---C------------------HHHHHHHHHH
Confidence 9999988754 3689999998775532 589999999999753221 1 1223478999
Q ss_pred HhcccccCcEEEEEEC
Q 017476 315 TASMLKPGGFFAFETN 330 (371)
Q Consensus 315 a~~~LkpgG~lvle~~ 330 (371)
+.++|+|||.++++.+
T Consensus 326 a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 326 ARRCLKINGELYIVAN 341 (378)
T ss_pred HHHhcccCCEEEEEEe
Confidence 9999999999999984
No 21
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.77 E-value=2.4e-17 Score=161.70 Aligned_cols=167 Identities=21% Similarity=0.331 Sum_probs=123.5
Q ss_pred ceeeEeeCCccccc---chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476 160 DLVLSVEEGVFIPR---PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (371)
Q Consensus 160 ~~~~~v~~~vliPr---p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A 236 (371)
++.+...|+||.+. ..|+.+.+.+... ..++|||+|||+|.+++.+++.. +..+|+++|+|+.|++.|
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~~--------~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A 236 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTPH--------TKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESS 236 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHhcccc--------CCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHH
Confidence 46788889999863 4567776654321 24589999999999999999974 778999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHh
Q 017476 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTA 316 (371)
Q Consensus 237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~ 316 (371)
++|++.+++. .+++.+|.++.. .++||+|||||||..... ...+....++..+.
T Consensus 237 ~~nl~~n~l~--~~~~~~D~~~~~---~~~fDlIvsNPPFH~g~~---------------------~~~~~~~~~i~~a~ 290 (342)
T PRK09489 237 RATLAANGLE--GEVFASNVFSDI---KGRFDMIISNPPFHDGIQ---------------------TSLDAAQTLIRGAV 290 (342)
T ss_pred HHHHHHcCCC--CEEEEccccccc---CCCccEEEECCCccCCcc---------------------ccHHHHHHHHHHHH
Confidence 9999999875 577888887643 368999999999964211 12456678999999
Q ss_pred cccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEE
Q 017476 317 SMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGF 369 (371)
Q Consensus 317 ~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~ 369 (371)
++|+|||.+++..+..-..+. ++.+ .|..+++..+ .+...+..|+
T Consensus 291 ~~LkpgG~L~iVan~~l~y~~---~l~~----~Fg~~~~la~-~~~f~v~~a~ 335 (342)
T PRK09489 291 RHLNSGGELRIVANAFLPYPD---LLDE----TFGSHEVLAQ-TGRFKVYRAI 335 (342)
T ss_pred HhcCcCCEEEEEEeCCCChHH---HHHH----HcCCeEEEEe-CCCEEEEEEE
Confidence 999999999999865444443 3332 2556666553 3333444444
No 22
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.77 E-value=2.3e-18 Score=142.41 Aligned_cols=113 Identities=30% Similarity=0.426 Sum_probs=90.7
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEcCC
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNPP 275 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsNPP 275 (371)
.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|+.|+..+++.++++++++|+.+... ...++||+|++|||
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 489999999999999999973 689999999999999999999999998889999999977542 22579999999999
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
|.......... -..+..+++.+.++|+|||.+++.+
T Consensus 80 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAAL------------------RRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTSBTT----G------------------GCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cccccccchhh------------------HHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 98642211100 1145689999999999999999987
No 23
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.76 E-value=1.5e-17 Score=151.27 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=113.2
Q ss_pred CCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEE
Q 017476 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (371)
Q Consensus 146 ~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~g 225 (371)
|.+.=||+|.. |++..+.+.++--. ||.++.+.+.+.+++.. ...+.+|||+|||+|.+++.++.. ...+|++
T Consensus 9 ~~~~mrIi~g~-~~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l~~---~~~~~~vLDl~~GsG~l~l~~lsr--~a~~V~~ 81 (199)
T PRK10909 9 GSGQIRIIGGQ-WRGRKLPVPDSPGL-RPTTDRVRETLFNWLAP---VIVDARCLDCFAGSGALGLEALSR--YAAGATL 81 (199)
T ss_pred CCCCEEEEeec-cCCCEeCCCCCCCc-CcCCHHHHHHHHHHHhh---hcCCCEEEEcCCCccHHHHHHHHc--CCCEEEE
Confidence 33345788876 68999987554322 99999999988887721 124569999999999999976554 2469999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcH
Q 017476 226 VDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL 305 (371)
Q Consensus 226 vDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl 305 (371)
+|+++.+++.|++|++.+++. +++++++|+.+.+....++||+|++||||... +.
T Consensus 82 vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g-----~~------------------- 136 (199)
T PRK10909 82 LEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPPFRKG-----LL------------------- 136 (199)
T ss_pred EECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCCCCCC-----hH-------------------
Confidence 999999999999999999976 59999999987654333579999999999531 10
Q ss_pred HHHHHHHHHHhcccccCcEEEEEEC
Q 017476 306 DYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 306 ~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
......+.. ..+|+++|++++|++
T Consensus 137 ~~~l~~l~~-~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 137 EETINLLED-NGWLADEALIYVESE 160 (199)
T ss_pred HHHHHHHHH-CCCcCCCcEEEEEec
Confidence 111123322 356899999999995
No 24
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.76 E-value=5.5e-17 Score=164.80 Aligned_cols=169 Identities=20% Similarity=0.192 Sum_probs=132.6
Q ss_pred cCCceeeEeec--------ccccceeeEeeCCccc--ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHH
Q 017476 145 KRKPFQYLVGC--------EHWRDLVLSVEEGVFI--PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIA 214 (371)
Q Consensus 145 ~~~P~~yi~g~--------~~f~~~~~~v~~~vli--Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la 214 (371)
.++|.+|+.|. .+|+++.|.++++.|+ .+..++.+++.+++++ ...++.+|||+|||+|.+++.++
T Consensus 241 ~~~~~~~i~g~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 241 KGPDLVHLLGPADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCCcceeecccccCCcceEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHH
Confidence 46789999886 2467899999999997 3567899999999877 22345799999999999999999
Q ss_pred HHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEEEcCCCCCCCCcccchhhhcc
Q 017476 215 RVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGK 291 (371)
Q Consensus 215 ~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvsNPPYi~~~~~~~l~~ev~~ 291 (371)
+.. .+|+|+|+|+.|++.|++|++.+++.+ ++++++|+.+.+.. ..++||+|++||||...
T Consensus 317 ~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g~------------ 380 (443)
T PRK13168 317 RQA---AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFTDQPWALGGFDKVLLDPPRAGA------------ 380 (443)
T ss_pred HhC---CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhhhhhhhcCCCCEEEECcCCcCh------------
Confidence 863 699999999999999999999999864 99999999765431 13579999999999631
Q ss_pred cCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEE
Q 017476 292 HEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSI 355 (371)
Q Consensus 292 ~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~ 355 (371)
. .+++.+. .+++++++++.++....+..+..+.+ .||.-.++
T Consensus 381 --------------~---~~~~~l~-~~~~~~ivyvSCnp~tlaRDl~~L~~----~gY~l~~i 422 (443)
T PRK13168 381 --------------A---EVMQALA-KLGPKRIVYVSCNPATLARDAGVLVE----AGYRLKRA 422 (443)
T ss_pred --------------H---HHHHHHH-hcCCCeEEEEEeChHHhhccHHHHhh----CCcEEEEE
Confidence 1 2222222 36999999999987777777777765 56854444
No 25
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.4e-16 Score=151.73 Aligned_cols=189 Identities=23% Similarity=0.397 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHhhcCCcee---eEeecccccc-------eeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCe
Q 017476 132 LDELYGLWKQRIEKRKPFQ---YLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGF 198 (371)
Q Consensus 132 ~~~~~~~~~~r~~~~~P~~---yi~g~~~f~~-------~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~ 198 (371)
.++|...|++-. .|+. .++-.+.|+. ..+.++||.-+- +|.|.+.++++.+.. .++.+
T Consensus 95 e~DW~~~wk~~~---~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~------~~g~~ 165 (300)
T COG2264 95 EEDWEREWKKYF---HPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLL------KKGKT 165 (300)
T ss_pred hHHHHHHHHhcC---CcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhh------cCCCE
Confidence 467777887543 4433 2333455652 347788888873 588999999887766 25779
Q ss_pred EEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCC
Q 017476 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (371)
Q Consensus 199 VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~ 278 (371)
|||+|||||.+++++++. ...+|+|+|+++.|++.|+.|++.|++...++....+..+... .++||+||+|-
T Consensus 166 vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~--~~~~DvIVANI---- 237 (300)
T COG2264 166 VLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE--NGPFDVIVANI---- 237 (300)
T ss_pred EEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc--cCcccEEEehh----
Confidence 999999999999999984 4568999999999999999999999987533333333322222 26999999982
Q ss_pred CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEec
Q 017476 279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSD 358 (371)
Q Consensus 279 ~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~D 358 (371)
-. +.+..+...+.+.|||||++++.--=.+|.+.|.+.+.+ .||..+++...
T Consensus 238 -------LA------------------~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~---~gf~v~~~~~~ 289 (300)
T COG2264 238 -------LA------------------EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQ---AGFEVVEVLER 289 (300)
T ss_pred -------hH------------------HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHh---CCCeEeEEEec
Confidence 01 234578888899999999999976556789999988874 68988777766
Q ss_pred CCCCceEE
Q 017476 359 FAGIQRFV 366 (371)
Q Consensus 359 l~g~~R~~ 366 (371)
.+.-+++
T Consensus 290 -~eW~~i~ 296 (300)
T COG2264 290 -EEWVAIV 296 (300)
T ss_pred -CCEEEEE
Confidence 5555544
No 26
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=7.8e-16 Score=138.79 Aligned_cols=139 Identities=21% Similarity=0.193 Sum_probs=109.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
+.+|||+|||+|.+++.+++.. ++.+|+|+|+|+.+++.|++|++.+++++ ++++++|..+. .. .++||+|++|-
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~-~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEF-GQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhC-CC-CCCccEEEEcc-
Confidence 6799999999999999999875 78899999999999999999999999876 99999998763 33 56899999961
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEE
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSI 355 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~ 355 (371)
...+..+++.+.++|+|||.+++.. +..+...+.++.+.+ +..-.-++
T Consensus 121 -----------------------------~~~~~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~~~~--~~~~~~~~ 168 (187)
T PRK00107 121 -----------------------------VASLSDLVELCLPLLKPGGRFLALK-GRDPEEEIAELPKAL--GGKVEEVI 168 (187)
T ss_pred -----------------------------ccCHHHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHHHhc--CceEeeeE
Confidence 0113478889999999999999998 556777777777753 33322233
Q ss_pred ---EecCCCCceEEEEEeC
Q 017476 356 ---VSDFAGIQRFVTGFRQ 371 (371)
Q Consensus 356 ---~~Dl~g~~R~~~a~~~ 371 (371)
..-+.|-..+++-+|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 169 ELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred EEecCCCCCcEEEEEEecC
Confidence 3445666678877764
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.71 E-value=1.7e-16 Score=130.00 Aligned_cols=110 Identities=28% Similarity=0.378 Sum_probs=88.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
+.+|||+|||+|.+++.+++.. ++.+|+|||+|+++++.|++|+...+..++++++++|+ .......++||+|+++-
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~- 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG- 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS-
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC-
Confidence 5699999999999999999965 78999999999999999999998888888999999999 32233346899999954
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+.. ..+ -.++..+.+++.+.+.|+|||+++++.
T Consensus 79 ~~~----~~~-----------------~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTL----HFL-----------------LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSG----GGC-----------------CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Ccc----ccc-----------------cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 210 000 012445678999999999999999976
No 28
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.69 E-value=8.3e-16 Score=147.45 Aligned_cols=192 Identities=29% Similarity=0.404 Sum_probs=131.2
Q ss_pred hHHHHHHHHHHHhhcCCcee-eEeecccccc-------eeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeE
Q 017476 131 GLDELYGLWKQRIEKRKPFQ-YLVGCEHWRD-------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFW 199 (371)
Q Consensus 131 ~~~~~~~~~~~r~~~~~P~~-yi~g~~~f~~-------~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~V 199 (371)
+.++|...|++...- .++. .++-.+.|.. ..+.++|++-+- +|.|.++++.+.+.. .++.+|
T Consensus 93 ~~~dW~~~Wk~~~~P-~~vg~~~~I~P~w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~------~~g~~v 165 (295)
T PF06325_consen 93 EEEDWEEAWKKYFKP-IRVGDRLVIVPSWEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYV------KPGKRV 165 (295)
T ss_dssp -HHCHHHHHHHH----EEECTTEEEEETT----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHS------STTSEE
T ss_pred ccccchHHHHhcCcc-EEECCcEEEECCCcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhc------cCCCEE
Confidence 446788888776532 1111 2333444432 357788887773 588888888887765 245699
Q ss_pred EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCC
Q 017476 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPS 279 (371)
Q Consensus 200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~ 279 (371)
||+|||||.+++++++. ...+|+|+|+++.+++.|++|++.|++.+++.+.. ..+ . ..++||+|++|-
T Consensus 166 LDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~-~--~~~~~dlvvANI----- 233 (295)
T PF06325_consen 166 LDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SED-L--VEGKFDLVVANI----- 233 (295)
T ss_dssp EEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSC-T--CCS-EEEEEEES-----
T ss_pred EEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecc-c--ccccCCEEEECC-----
Confidence 99999999999999984 45689999999999999999999999998776631 111 1 137999999982
Q ss_pred CCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecC
Q 017476 280 DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDF 359 (371)
Q Consensus 280 ~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl 359 (371)
. .+.+..++....++|+|||++++.---..|.+.|.+.++ .||..++...+
T Consensus 234 ------~------------------~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~----~g~~~~~~~~~- 284 (295)
T PF06325_consen 234 ------L------------------ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYK----QGFELVEEREE- 284 (295)
T ss_dssp -------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHH----TTEEEEEEEEE-
T ss_pred ------C------------------HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHH----CCCEEEEEEEE-
Confidence 1 233457778888999999999996544568888888885 37876665542
Q ss_pred CCCceEEEEEeC
Q 017476 360 AGIQRFVTGFRQ 371 (371)
Q Consensus 360 ~g~~R~~~a~~~ 371 (371)
|..-.+.++|+
T Consensus 285 -~~W~~l~~~Kk 295 (295)
T PF06325_consen 285 -GEWVALVFKKK 295 (295)
T ss_dssp -TTEEEEEEEE-
T ss_pred -CCEEEEEEEeC
Confidence 44455555554
No 29
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.69 E-value=4.4e-15 Score=139.83 Aligned_cols=189 Identities=25% Similarity=0.355 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHhhcCCceeeEeecccccc------eeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEEE
Q 017476 131 GLDELYGLWKQRIEKRKPFQYLVGCEHWRD------LVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWVD 201 (371)
Q Consensus 131 ~~~~~~~~~~~r~~~~~P~~yi~g~~~f~~------~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~VLD 201 (371)
+.+++...|++....-+--..+.-.+.|.. ..+.++|+.-+. ++.|..+++.+.... .++.+|||
T Consensus 52 ~~~dw~~~w~~~~~p~~~g~~~~i~p~~~~~~~~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~------~~~~~VLD 125 (250)
T PRK00517 52 EDEDWEREWKKYFHPIRIGDRLWIVPSWEDPPDPDEINIELDPGMAFGTGTHPTTRLCLEALEKLV------LPGKTVLD 125 (250)
T ss_pred CchhHHHHHHHHCCCEEEcCCEEEECCCcCCCCCCeEEEEECCCCccCCCCCHHHHHHHHHHHhhc------CCCCEEEE
Confidence 346788888877533222213333344432 345666665553 466677666665433 24679999
Q ss_pred ECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCC
Q 017476 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDD 281 (371)
Q Consensus 202 lG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~ 281 (371)
+|||+|.+++.+++. ...+|+|+|+|+.+++.|++|+..+++.+++.+..+|. +||+|++|..
T Consensus 126 iGcGsG~l~i~~~~~--g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~---------~fD~Vvani~------ 188 (250)
T PRK00517 126 VGCGSGILAIAAAKL--GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL---------KADVIVANIL------ 188 (250)
T ss_pred eCCcHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC---------CcCEEEEcCc------
Confidence 999999999987764 33479999999999999999999998865566555432 6999999731
Q ss_pred cccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCC
Q 017476 282 ISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAG 361 (371)
Q Consensus 282 ~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g 361 (371)
.+.+..++..+.++|||||++++......+.+.+.+.+++ .||..+++..+ |
T Consensus 189 -----------------------~~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~---~Gf~~~~~~~~--~ 240 (250)
T PRK00517 189 -----------------------ANPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEE---AGFTLDEVLER--G 240 (250)
T ss_pred -----------------------HHHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHH---CCCEEEEEEEe--C
Confidence 1224467888999999999999986556677888888875 78977766553 3
Q ss_pred CceEEEEEe
Q 017476 362 IQRFVTGFR 370 (371)
Q Consensus 362 ~~R~~~a~~ 370 (371)
....++++|
T Consensus 241 ~W~~~~~~~ 249 (250)
T PRK00517 241 EWVALVGKK 249 (250)
T ss_pred CEEEEEEEe
Confidence 333344444
No 30
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.68 E-value=1.6e-15 Score=136.09 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=103.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
.+.+|||+|||+|.+++.++... ++.+|+|+|.|+.+++.+++|++++++.+ ++++++|+.+. . ..++||+|++|.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~-~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDF-Q-HEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhc-c-ccCCccEEEehh
Confidence 46799999999999999998764 77899999999999999999999999865 99999999763 2 246899999963
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS 354 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~ 354 (371)
+ ..+..+++.+.++|+|||.+++.+ +.....++..+.+..-..||..++
T Consensus 118 -~-----------------------------~~~~~~~~~~~~~LkpgG~lvi~~-~~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 118 -L-----------------------------ASLNVLLELTLNLLKVGGYFLAYK-GKKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred -h-----------------------------hCHHHHHHHHHHhcCCCCEEEEEc-CCCcHHHHHHHHHhhhhcCceEee
Confidence 1 112356777789999999999998 556666666666542224665544
Q ss_pred EEecCCCCceEEE
Q 017476 355 IVSDFAGIQRFVT 367 (371)
Q Consensus 355 ~~~Dl~g~~R~~~ 367 (371)
. +.+.+-+|=++
T Consensus 167 ~-~~~~~~~~~~~ 178 (181)
T TIGR00138 167 V-PPLTGPDRHLV 178 (181)
T ss_pred c-cccCCCceEEE
Confidence 3 33555566444
No 31
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.67 E-value=6.7e-15 Score=136.33 Aligned_cols=145 Identities=17% Similarity=0.258 Sum_probs=112.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|.++..+++.+++..+|+|+|+|+.+++.|++|+...++. +++++++|..+. +...++||+|+++-
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMEL-PFDDNSFDYVTIGF 122 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcC-CCCCCCccEEEEec
Confidence 4679999999999999999987656789999999999999999999888774 599999998653 22347899999964
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCc--------------------
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQ-------------------- 334 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q-------------------- 334 (371)
.+. +- ..+..+++++.+.|+|||++++...+..+
T Consensus 123 ~l~--------------~~------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 176 (231)
T TIGR02752 123 GLR--------------NV------------PDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFG 176 (231)
T ss_pred ccc--------------cC------------CCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhh
Confidence 321 11 11346888899999999999876532111
Q ss_pred ----------------------HHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476 335 ----------------------CKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 335 ----------------------~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~ 370 (371)
.+++.+++++ .||..+++..-..|.-..++|+|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 177 KLFAKSYKEYSWLQESTRDFPGMDELAEMFQE---AGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHH---cCCCeeEEEEcccceEEEEEEEC
Confidence 1456677775 78999998887779998988876
No 32
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=1.2e-15 Score=156.12 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=116.8
Q ss_pred ccCchHHHHHHHHHHHhhcCCceee----EeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEE
Q 017476 127 RLRIGLDELYGLWKQRIEKRKPFQY----LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDL 202 (371)
Q Consensus 127 ~l~~~~~~~~~~~~~r~~~~~P~~y----i~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDl 202 (371)
.+..+..+.+..+.+| +|| |+|...|++.+|.+.++++ +|+.+++.+. + .++.+|||+
T Consensus 212 ~~~~~~~~~~~~~~~~------~~y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~--~------~~~~~vLDi 273 (475)
T PLN02336 212 KVSSTNDKGFQRFLDN------VQYKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLD--L------KPGQKVLDV 273 (475)
T ss_pred eecCCcchhHHHHhhh------hccccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcC--C------CCCCEEEEE
Confidence 3444334445444444 999 9999999999999999987 6777777542 1 245699999
Q ss_pred CCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCc
Q 017476 203 GTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDI 282 (371)
Q Consensus 203 G~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~ 282 (371)
|||+|.+++.+++.+ +.+|+|+|+|+.+++.|++|+. +...++++.++|+.+.. ...++||+|+|+--+
T Consensus 274 GcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l------ 342 (475)
T PLN02336 274 GCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTI------ 342 (475)
T ss_pred eccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC-CCCCCEEEEEECCcc------
Confidence 999999999999874 6799999999999999999875 44456999999987642 224689999994222
Q ss_pred ccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 283 SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 283 ~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.|-+ ....+++.+.+.|+|||.+++..
T Consensus 343 --------~h~~------------d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 343 --------LHIQ------------DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred --------cccC------------CHHHHHHHHHHHcCCCeEEEEEE
Confidence 1211 13378889999999999999874
No 33
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.67 E-value=6.2e-15 Score=141.70 Aligned_cols=181 Identities=24% Similarity=0.421 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHhhcCCcee-eEeeccccc-------ceeeEeeCCcccc---cchHHHHHHHHHHHhhhcCCCCCCCeEE
Q 017476 132 LDELYGLWKQRIEKRKPFQ-YLVGCEHWR-------DLVLSVEEGVFIP---RPETELMVDLVSDVLVRDNDGLRDGFWV 200 (371)
Q Consensus 132 ~~~~~~~~~~r~~~~~P~~-yi~g~~~f~-------~~~~~v~~~vliP---rp~te~lv~~~~~~~~~~~~~~~~~~VL 200 (371)
.+++.+.|++...- .++. +++-.+.|. ...+.++|+..+. ++.|.+..+.+.... .++.+||
T Consensus 92 ~~dW~~~w~~~~~p-~~~g~~~~i~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~------~~g~~VL 164 (288)
T TIGR00406 92 SKDWERAWKDNFHP-VQFGKRFWICPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLD------LKDKNVI 164 (288)
T ss_pred hhhHHHHHHHhCCC-EEEcCeEEEECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhc------CCCCEEE
Confidence 47888899877532 2222 233333342 2457788887773 366666666554432 2457999
Q ss_pred EECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCC
Q 017476 201 DLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSD 280 (371)
Q Consensus 201 DlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~ 280 (371)
|+|||+|.+++.+++. ...+|+|+|+|+.+++.|++|+..+++.+++.+..++.... ..++||+|++|..
T Consensus 165 DvGcGsG~lai~aa~~--g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~~~~fDlVvan~~----- 234 (288)
T TIGR00406 165 DVGCGSGILSIAALKL--GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---IEGKADVIVANIL----- 234 (288)
T ss_pred EeCCChhHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---cCCCceEEEEecC-----
Confidence 9999999999988874 45699999999999999999999999887788888774322 2368999999842
Q ss_pred CcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEe
Q 017476 281 DISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVS 357 (371)
Q Consensus 281 ~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~ 357 (371)
.+.+..++..+.+.|+|||++++..-...+.+.+.+.+++ . |..+++..
T Consensus 235 ------------------------~~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~---~-f~~~~~~~ 283 (288)
T TIGR00406 235 ------------------------AEVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQ---G-FTVVEIRQ 283 (288)
T ss_pred ------------------------HHHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHc---c-CceeeEec
Confidence 1224468888899999999999976566788888888874 4 86665543
No 34
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.66 E-value=1.6e-15 Score=161.83 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=107.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccCCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
++++|||+|||+|.+++.+++. ...+|++||+|+.+++.|++|++.+++. ++++++++|+++.+....++||+||+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 3579999999999999999984 3457999999999999999999999986 579999999987664435689999999
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN 352 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~ 352 (371)
|||....... . .+ .++...|..++..+.++|+|||.++++++ ..+.....+.+.+ .||.-
T Consensus 616 PP~f~~~~~~--~-~~------------~~~~~~y~~l~~~a~~lL~~gG~l~~~~~-~~~~~~~~~~~~~---~g~~~ 675 (702)
T PRK11783 616 PPTFSNSKRM--E-DS------------FDVQRDHVALIKDAKRLLRPGGTLYFSNN-KRGFKMDEEGLAK---LGLKA 675 (702)
T ss_pred CCCCCCCCcc--c-hh------------hhHHHHHHHHHHHHHHHcCCCCEEEEEeC-CccCChhHHHHHh---CCCeE
Confidence 9998643210 0 00 12356788999999999999999999984 4555555666654 45643
No 35
>PHA03411 putative methyltransferase; Provisional
Probab=99.65 E-value=2.2e-15 Score=142.07 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=106.1
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
..+|||+|||+|.+++.+++.. +..+|+|+|+|+.+++.|++|. .+++++++|+.+... .++||+||+|||
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--~~kFDlIIsNPP 135 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--NEKFDVVISNPP 135 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--cCCCcEEEEcCC
Confidence 4689999999999999998864 4579999999999999999874 248899999987543 368999999999
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHH--HHHHHHHhcccccCcEEEEEEC------CcCcHHHHHHHHhcccc
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYL--LHLCNGTASMLKPGGFFAFETN------GEKQCKFLKNYLENDSA 347 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~--~~il~~a~~~LkpgG~lvle~~------~~~q~~~v~~~l~~~~~ 347 (371)
|...... ......+..||+.|.+.+ ..++.....+|+|+|.+++... ..-..++.++++++
T Consensus 136 F~~l~~~--------d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~--- 204 (279)
T PHA03411 136 FGKINTT--------DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQ--- 204 (279)
T ss_pred ccccCch--------hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHh---
Confidence 9864321 112225667888888875 7899999999999998877543 23346778888886
Q ss_pred CCce
Q 017476 348 CSFC 351 (371)
Q Consensus 348 ~gf~ 351 (371)
.||.
T Consensus 205 ~g~~ 208 (279)
T PHA03411 205 TGLV 208 (279)
T ss_pred cCcE
Confidence 5663
No 36
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.65 E-value=3.2e-15 Score=135.84 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=102.3
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
...++.+|||+|||+|.+++.+++..++..+|+++|+++.+++.|++|++.+++.+++.++.+|..+.+....+.||.|+
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 34467799999999999999999876566799999999999999999999999766799999998765444346899999
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCc
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSF 350 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf 350 (371)
++.. ...+..+++.+.+.|+|||.++++.....+...+...+++ .||
T Consensus 117 ~~~~-----------------------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~g~ 163 (198)
T PRK00377 117 IGGG-----------------------------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALEN---IGF 163 (198)
T ss_pred ECCC-----------------------------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHH---cCC
Confidence 8531 1123478888999999999999977556667777888865 567
No 37
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.65 E-value=2.8e-15 Score=146.70 Aligned_cols=152 Identities=17% Similarity=0.208 Sum_probs=110.8
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q 017476 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEI 251 (371)
Q Consensus 172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~ 251 (371)
|.+-.+.+...++... ...++.+|||+|||+|.+++.++.. +.+++|+|+++.+++.|++|++.+|+++ +.+
T Consensus 163 ~~~l~~~la~~~~~l~----~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~ 234 (329)
T TIGR01177 163 PGSMDPKLARAMVNLA----RVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFV 234 (329)
T ss_pred CCCCCHHHHHHHHHHh----CCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeE
Confidence 3333445555555443 2335679999999999999987763 5799999999999999999999999987 899
Q ss_pred EEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476 252 RQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG 331 (371)
Q Consensus 252 ~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~ 331 (371)
+++|+.+ ++...+.||+|++||||....... +....+.+..+++.+.+.|+|||++++.+..
T Consensus 235 ~~~D~~~-l~~~~~~~D~Iv~dPPyg~~~~~~-----------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 235 KRGDATK-LPLSSESVDAIATDPPYGRSTTAA-----------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred Eecchhc-CCcccCCCCEEEECCCCcCccccc-----------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 9999976 332246899999999997432211 1112356789999999999999999999854
Q ss_pred cCcHHHHHHHHhccccCCceeEEEE
Q 017476 332 EKQCKFLKNYLENDSACSFCNVSIV 356 (371)
Q Consensus 332 ~~q~~~v~~~l~~~~~~gf~~v~~~ 356 (371)
.. .+.++++. .|| .+..+
T Consensus 297 ~~---~~~~~~~~---~g~-i~~~~ 314 (329)
T TIGR01177 297 RI---DLESLAED---AFR-VVKRF 314 (329)
T ss_pred CC---CHHHHHhh---cCc-chhee
Confidence 32 34555664 567 44443
No 38
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.65 E-value=3.4e-15 Score=151.80 Aligned_cols=170 Identities=20% Similarity=0.317 Sum_probs=118.9
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 017476 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246 (371)
Q Consensus 167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~ 246 (371)
.|.+.+..++..++..++. ..++.+|||+|||+|..++.+++.+++.++|+|+|+++.+++.+++|++++|+.
T Consensus 229 ~G~~~~qd~~s~lv~~~l~-------~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~ 301 (444)
T PRK14902 229 DGLITIQDESSMLVAPALD-------PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT 301 (444)
T ss_pred CceEEEEChHHHHHHHHhC-------CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3444445555554443332 224568999999999999999997656789999999999999999999999987
Q ss_pred CcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHH----HHHHHHHHHhcccccC
Q 017476 247 DIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD----YLLHLCNGTASMLKPG 322 (371)
Q Consensus 247 ~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~----~~~~il~~a~~~Lkpg 322 (371)
+ ++++++|+.+......++||+|++||||...+.+ ++.|...+....+++. ....+++.+.++||||
T Consensus 302 ~-v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~--------~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 302 N-IETKALDARKVHEKFAEKFDKILVDAPCSGLGVI--------RRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred e-EEEEeCCcccccchhcccCCEEEEcCCCCCCeee--------ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6 9999999976533223689999999998754332 3344444333333332 2357899999999999
Q ss_pred cEEEEEECCc---CcHHHHHHHHhccccCCceeEE
Q 017476 323 GFFAFETNGE---KQCKFLKNYLENDSACSFCNVS 354 (371)
Q Consensus 323 G~lvle~~~~---~q~~~v~~~l~~~~~~gf~~v~ 354 (371)
|.+++.+... .....+..++++. ..|..+.
T Consensus 373 G~lvystcs~~~~Ene~vv~~~l~~~--~~~~~~~ 405 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVIEAFLEEH--PEFELVP 405 (444)
T ss_pred CEEEEEcCCCChhhhHHHHHHHHHhC--CCcEEec
Confidence 9999865322 2334455666652 3465444
No 39
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.65 E-value=6.9e-15 Score=132.33 Aligned_cols=124 Identities=23% Similarity=0.304 Sum_probs=100.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|.+++.+++.. ++.+|+++|+|+.+++.|++|+..+++. +++++.+|....+ .++||+|+++-
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~~---~~~~D~v~~~~ 105 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIEL---PGKADAIFIGG 105 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhhc---CcCCCEEEECC
Confidence 56799999999999999999975 7789999999999999999999998875 4999999975433 35899999852
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS 354 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~ 354 (371)
.. ..+..+++.+.+.|+|||++++......+.+++.+++++ .||..++
T Consensus 106 ~~-----------------------------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~---~g~~~~~ 153 (187)
T PRK08287 106 SG-----------------------------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEK---CGVSELD 153 (187)
T ss_pred Cc-----------------------------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHH---CCCCcce
Confidence 10 013467888899999999999986555677778888886 6786655
Q ss_pred E
Q 017476 355 I 355 (371)
Q Consensus 355 ~ 355 (371)
+
T Consensus 154 ~ 154 (187)
T PRK08287 154 C 154 (187)
T ss_pred E
Confidence 4
No 40
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.64 E-value=2.3e-15 Score=150.40 Aligned_cols=131 Identities=16% Similarity=0.198 Sum_probs=101.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccC---CCceeEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDV---EGKLSGV 270 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~---~~~fDlI 270 (371)
++++|||+|||+|.+++.++.. ...+|++||+|+.+++.|++|++.+++. ++++++++|+++.+... .++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 3679999999999999887753 4569999999999999999999999986 47999999998865432 3589999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE-CCcCcHHHHHHHHhc
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET-NGEKQCKFLKNYLEN 344 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~-~~~~q~~~v~~~l~~ 344 (371)
|+||||...... ++. .++..|..++..+.++|+|||.+++.. .+.-..+.+.+++.+
T Consensus 298 ilDPP~f~~~k~--------------~l~---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 298 VMDPPKFVENKS--------------QLM---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred EECCCCCCCChH--------------HHH---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 999999754320 111 234568889999999999999988744 334455666666653
No 41
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.63 E-value=1e-14 Score=145.17 Aligned_cols=147 Identities=17% Similarity=0.165 Sum_probs=112.0
Q ss_pred ccceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476 158 WRDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (371)
Q Consensus 158 f~~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~ 235 (371)
+.+..|.++++.|+. ....+.+.+.+.+++ . ...+.+|||+|||+|.+++.++.. ..+|+|||+++.+++.
T Consensus 198 ~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l-~---~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~ 270 (374)
T TIGR02085 198 FNDVPLVIRPQSFFQTNPKVAAQLYATARQWV-R---EIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIAC 270 (374)
T ss_pred ECCEEEEECCCccccCCHHHHHHHHHHHHHHH-H---hcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHH
Confidence 446789999999985 355677777777665 1 123468999999999999999964 4789999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315 (371)
Q Consensus 236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a 315 (371)
|++|++.+++. +++++.+|+.+.+....++||+||.||||-. +.. .+++.+
T Consensus 271 a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G------~~~----------------------~~l~~l 321 (374)
T TIGR02085 271 AQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPRRG------IGK----------------------ELCDYL 321 (374)
T ss_pred HHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCCCC------CcH----------------------HHHHHH
Confidence 99999999986 5999999997654332346999999999841 111 222222
Q ss_pred hcccccCcEEEEEECCcCcHHHHHHH
Q 017476 316 ASMLKPGGFFAFETNGEKQCKFLKNY 341 (371)
Q Consensus 316 ~~~LkpgG~lvle~~~~~q~~~v~~~ 341 (371)
. .++|++.++++++....+..+..+
T Consensus 322 ~-~~~p~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 322 S-QMAPKFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred H-hcCCCeEEEEEeCHHHHHHHHHHh
Confidence 2 379999999999776677776666
No 42
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.63 E-value=4.2e-15 Score=134.78 Aligned_cols=145 Identities=23% Similarity=0.315 Sum_probs=111.1
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc--CCCceeEEEEc
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSGVVSN 273 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~--~~~~fDlIvsN 273 (371)
..++||+|||+|.++..+++.. |+.+|+|+|+++.+++.|++|+...++. +++++++|+.+.... ..+.+|.|++|
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4589999999999999999985 8899999999999999999999999887 599999999753321 13589999999
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNV 353 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v 353 (371)
+|-..... .|..+..+ ...+++.+.+.|||||.+++.+......+.+.+.+.+. .+|..+
T Consensus 95 ~pdpw~k~---------~h~~~r~~---------~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~--~~f~~~ 154 (194)
T TIGR00091 95 FPDPWPKK---------RHNKRRIT---------QPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN--DLFENT 154 (194)
T ss_pred CCCcCCCC---------CccccccC---------CHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC--CCeEec
Confidence 76322111 12211111 23688999999999999999997666677788888763 568877
Q ss_pred EEEecCCCC
Q 017476 354 SIVSDFAGI 362 (371)
Q Consensus 354 ~~~~Dl~g~ 362 (371)
....|+.+.
T Consensus 155 ~~~~~~~~~ 163 (194)
T TIGR00091 155 SKSTDLNNS 163 (194)
T ss_pred ccccccCCC
Confidence 766666553
No 43
>PHA03412 putative methyltransferase; Provisional
Probab=99.62 E-value=2.9e-15 Score=138.41 Aligned_cols=108 Identities=17% Similarity=0.263 Sum_probs=84.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~--~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
+.+|||+|||+|.+++.+++++. +..+|+|||+++.++++|++|.. ++.++++|+.... ..++||+||+|
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--FDTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--ccCCccEEEEC
Confidence 56999999999999999998641 35699999999999999998852 3789999987532 24689999999
Q ss_pred CCCCCCCCcccchhhhcccCccccc-cCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLAL-DGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL-~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
|||..... +. .+..+|+.....+++.+.+++++|+. ++
T Consensus 122 PPY~~~~~---------------~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 122 PPFGKIKT---------------SDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCCCCccc---------------cccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 99986321 11 23356889999999999996666664 44
No 44
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.61 E-value=1.5e-14 Score=146.48 Aligned_cols=166 Identities=18% Similarity=0.206 Sum_probs=121.6
Q ss_pred CCceeeEeecccc----cceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC
Q 017476 146 RKPFQYLVGCEHW----RDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS 219 (371)
Q Consensus 146 ~~P~~yi~g~~~f----~~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~ 219 (371)
+++...+.|...+ .+..|.++++.|++ +..++.+++.+.+.+ ...++.+|||+|||+|.+++.+++..
T Consensus 241 g~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l----~~~~~~~vLDl~cG~G~~sl~la~~~-- 314 (431)
T TIGR00479 241 GEETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEAL----ELQGEELVVDAYCGVGTFTLPLAKQA-- 314 (431)
T ss_pred CCceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHh----ccCCCCEEEEcCCCcCHHHHHHHHhC--
Confidence 3456667775443 36789999999985 466788888887766 22345699999999999999999863
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEEEcCCCCCCCCcccchhhhcccCccc
Q 017476 220 KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRL 296 (371)
Q Consensus 220 ~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~ 296 (371)
.+|+|+|+++.+++.|++|++.+++. +++++.+|+.+.+.. ..+.||+|+.|||+.... .
T Consensus 315 -~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~------~--------- 377 (431)
T TIGR00479 315 -KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCA------A--------- 377 (431)
T ss_pred -CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCC------H---------
Confidence 58999999999999999999999986 599999998664332 134799999999974211 1
Q ss_pred cccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476 297 ALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN 352 (371)
Q Consensus 297 aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~ 352 (371)
.+++.+. .+++++.+++.++.......+..+.+ .||.-
T Consensus 378 -------------~~l~~l~-~l~~~~ivyvsc~p~tlard~~~l~~----~gy~~ 415 (431)
T TIGR00479 378 -------------EVLRTII-ELKPERIVYVSCNPATLARDLEFLCK----EGYGI 415 (431)
T ss_pred -------------HHHHHHH-hcCCCEEEEEcCCHHHHHHHHHHHHH----CCeeE
Confidence 3333333 37899999999865544455555443 56743
No 45
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.61 E-value=2.5e-14 Score=139.22 Aligned_cols=147 Identities=18% Similarity=0.144 Sum_probs=111.8
Q ss_pred ccceeeEeeCCccccc--chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476 158 WRDLVLSVEEGVFIPR--PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (371)
Q Consensus 158 f~~~~~~v~~~vliPr--p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~ 235 (371)
+.+..|.++++.|++. ...+.+.+.+.+++ . ..++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.
T Consensus 138 ~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l-~---~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~ 210 (315)
T PRK03522 138 FNGVPLFIRPQSFFQTNPAVAAQLYATARDWV-R---ELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIAC 210 (315)
T ss_pred ECCEEEEECCCeeeecCHHHHHHHHHHHHHHH-H---hcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHH
Confidence 3467899999999864 45677888777776 2 123579999999999999999984 4799999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315 (371)
Q Consensus 236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a 315 (371)
|++|++.+++. +++++++|+.+......++||+|++|||+-.. ..+ ...++
T Consensus 211 A~~n~~~~~l~-~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~------~~~-------------------~~~~l--- 261 (315)
T PRK03522 211 AKQSAAELGLT-NVQFQALDSTQFATAQGEVPDLVLVNPPRRGI------GKE-------------------LCDYL--- 261 (315)
T ss_pred HHHHHHHcCCC-ceEEEEcCHHHHHHhcCCCCeEEEECCCCCCc------cHH-------------------HHHHH---
Confidence 99999999984 59999999976543233579999999996321 111 11222
Q ss_pred hcccccCcEEEEEECCcCcHHHHHHH
Q 017476 316 ASMLKPGGFFAFETNGEKQCKFLKNY 341 (371)
Q Consensus 316 ~~~LkpgG~lvle~~~~~q~~~v~~~ 341 (371)
..++|++.+++.++.......+..+
T Consensus 262 -~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 262 -SQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred -HHcCCCeEEEEECCcccchhHHhhc
Confidence 2367889999999877777666554
No 46
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.61 E-value=8.4e-14 Score=132.02 Aligned_cols=146 Identities=18% Similarity=0.158 Sum_probs=107.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR--YGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~--~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
++.+|||+|||+|.++..+++.+++.++|+|+|+|++|++.|+++... .+...+++++++|+.+ ++..+++||+|++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-lp~~~~sfD~V~~ 151 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-LPFDDCYFDAITM 151 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-CCCCCCCEeEEEE
Confidence 467999999999999999998765667999999999999999887542 2223469999999865 3433578999998
Q ss_pred cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc--------------------
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-------------------- 332 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-------------------- 332 (371)
+--+ .+- .....+++++.+.|||||.+++.....
T Consensus 152 ~~~l--------------~~~------------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~ 205 (261)
T PLN02233 152 GYGL--------------RNV------------VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVP 205 (261)
T ss_pred eccc--------------ccC------------CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhH
Confidence 5211 111 123478899999999999987753211
Q ss_pred ---------------------CcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476 333 ---------------------KQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 333 ---------------------~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~ 370 (371)
...+++.+++++ .||..++...-..|.-++.+|+|
T Consensus 206 ~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~---aGF~~~~~~~~~~g~~~~~~~~~ 261 (261)
T PLN02233 206 VATGYGLAKEYEYLKSSINEYLTGEELEKLALE---AGFSSAKHYEISGGLMGNLVATR 261 (261)
T ss_pred HHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHH---CCCCEEEEEEcCCCeeEEEEEeC
Confidence 133455667764 78999988776778888887764
No 47
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=3.1e-15 Score=139.44 Aligned_cols=105 Identities=26% Similarity=0.383 Sum_probs=75.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||||.++..+++..++.++|+|+|+|+.|++.|++++...+.. +++++++|..+ ++..+++||.|++-
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~-lp~~d~sfD~v~~~- 123 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAED-LPFPDNSFDAVTCS- 123 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S-TT-EEEEEEE-
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHH-hcCCCCceeEEEHH-
Confidence 4679999999999999999987767789999999999999999999988876 59999999965 45456899999981
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
| .. +. +.+....++++.++|||||.+++
T Consensus 124 -f-----------gl-rn------------~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 124 -F-----------GL-RN------------FPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp -S------------G-GG-------------SSHHHHHHHHHHHEEEEEEEEE
T ss_pred -h-----------hH-Hh------------hCCHHHHHHHHHHHcCCCeEEEE
Confidence 0 01 11 12244788999999999998876
No 48
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=1.1e-14 Score=126.64 Aligned_cols=109 Identities=28% Similarity=0.373 Sum_probs=89.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN 273 (371)
++.+|||+|||+|.++..+++...++.+++|+|+|+++++.|+++++..+++ +++|+++|+.+ ++. ..++||+|+++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-cccccCCCeeEEEEc
Confidence 3569999999999999999965567899999999999999999999999998 69999999988 542 12689999998
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG 331 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~ 331 (371)
+++.. +.....+++.+.+.|++||.+++....
T Consensus 81 ~~l~~--------------------------~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHH--------------------------FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGG--------------------------TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhh--------------------------ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 76521 122346788999999999999988743
No 49
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.60 E-value=7.1e-15 Score=132.12 Aligned_cols=143 Identities=24% Similarity=0.329 Sum_probs=102.2
Q ss_pred cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (371)
Q Consensus 157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A 236 (371)
.|.|..+...++ -.-||.+..+-+.+.+++... ...+.+|||++||||++++.++.+ ...+|+.||.|+.+++..
T Consensus 7 ~~kgr~l~~p~~-~~~RPT~drvrealFniL~~~--~~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i 81 (183)
T PF03602_consen 7 KYKGRKLKTPKG-DNTRPTTDRVREALFNILQPR--NLEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKII 81 (183)
T ss_dssp TTTT-EEE-TT---TS-SSSHHHHHHHHHHHHCH---HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHH
T ss_pred ecCCCEecCCCC-CCcCCCcHHHHHHHHHHhccc--ccCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHH
Confidence 356677766555 344899999999888888322 146789999999999999998885 457999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcCcccccccC---CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476 237 AFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313 (371)
Q Consensus 237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~ 313 (371)
++|++..+..++++++.+|.+..+... ..+||+|+.+|||-... . +..+++
T Consensus 82 ~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~-------------------------~-~~~~l~ 135 (183)
T PF03602_consen 82 KKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL-------------------------Y-YEELLE 135 (183)
T ss_dssp HHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH-------------------------H-HHHHHH
T ss_pred HHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch-------------------------H-HHHHHH
Confidence 999999999888999999987665332 47899999999996321 0 223444
Q ss_pred HHh--cccccCcEEEEEEC
Q 017476 314 GTA--SMLKPGGFFAFETN 330 (371)
Q Consensus 314 ~a~--~~LkpgG~lvle~~ 330 (371)
... .+|+++|.+++|+.
T Consensus 136 ~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 136 LLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHTTSEEEEEEEEEEEE
T ss_pred HHHHCCCCCCCEEEEEEec
Confidence 443 89999999999995
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.59 E-value=1.3e-14 Score=132.54 Aligned_cols=130 Identities=18% Similarity=0.190 Sum_probs=99.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--cCCCceeEEEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVVS 272 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~~~~~fDlIvs 272 (371)
.+.+|||+|||+|.++..+++.+ ++.+|+|||+|+++++.|++|+..+++. +++++++|+.+.+. ...+.||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEE
Confidence 35689999999999999999875 7789999999999999999999998874 59999999833332 22468999999
Q ss_pred cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
|.|.......+.. .......+++.+.++|+|||.+++.+........+.+.+++
T Consensus 118 ~~~~p~~~~~~~~------------------~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 171 (202)
T PRK00121 118 NFPDPWPKKRHHK------------------RRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSA 171 (202)
T ss_pred ECCCCCCCccccc------------------cccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 8653211110000 00113478899999999999999998777777778887775
No 51
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.58 E-value=2.9e-14 Score=130.85 Aligned_cols=138 Identities=20% Similarity=0.254 Sum_probs=98.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-------ccCCCce
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-------KDVEGKL 267 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-------~~~~~~f 267 (371)
++.+|||+|||+|.++..+++..++..+|+|||+++ + ...+ +++++++|+.+.. ....+.|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV-GVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 466999999999999999999865567999999998 1 1233 3899999997641 1124689
Q ss_pred eEEEEcC-CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccc
Q 017476 268 SGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDS 346 (371)
Q Consensus 268 DlIvsNP-PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~ 346 (371)
|+|+||+ |+.......... .+ +.....+++.+.++|+|||.+++.+.......++...++
T Consensus 119 D~V~S~~~~~~~g~~~~d~~----~~------------~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~--- 179 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIP----RA------------MYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR--- 179 (209)
T ss_pred CEEecCCCCccCCChHHHHH----HH------------HHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH---
Confidence 9999997 554221100000 00 122357899999999999999997754455555555554
Q ss_pred cCCceeEEEEecCCCCce
Q 017476 347 ACSFCNVSIVSDFAGIQR 364 (371)
Q Consensus 347 ~~gf~~v~~~~Dl~g~~R 364 (371)
..|..+++++|.++++|
T Consensus 180 -~~f~~v~~~Kp~ssr~~ 196 (209)
T PRK11188 180 -SLFTKVKVRKPDSSRAR 196 (209)
T ss_pred -hCceEEEEECCcccccc
Confidence 46999999999999876
No 52
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.58 E-value=1.2e-13 Score=131.25 Aligned_cols=140 Identities=16% Similarity=0.238 Sum_probs=102.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|..++.+++.+++.+.|+|+|+++.+++.+++|++++|+.+ ++++.+|..... ...+.||.|++||
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~-~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFG-AAVPKFDAILLDA 148 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhh-hhccCCCEEEEcC
Confidence 56799999999999999999987556799999999999999999999999865 999999975432 2235799999999
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEECCcCc---HHHHHHHHhc
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETNGEKQ---CKFLKNYLEN 344 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~~~~q---~~~v~~~l~~ 344 (371)
|+...+.+ +++|...+.-..+-+ .....+++.+.++|||||++++.+..... .+.+..+++.
T Consensus 149 Pcsg~G~~--------~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 149 PCSGEGVI--------RKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CCCCCccc--------ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 99755433 223332211111111 23356999999999999999998743333 2344555554
No 53
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=8.1e-14 Score=141.01 Aligned_cols=162 Identities=15% Similarity=0.187 Sum_probs=114.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN 273 (371)
++.+|||+|||+|..++.+++.. ++.+|+|+|+++.+++.+++|++++|+. ++++++|..+.... ..++||.|++|
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD~Vl~D 320 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFDRILLD 320 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCCEEEEC
Confidence 56799999999999999999975 5579999999999999999999999875 78999998753221 13579999999
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEEC---CcCcHHHHHHHHhccc
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETN---GEKQCKFLKNYLENDS 346 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~---~~~q~~~v~~~l~~~~ 346 (371)
|||...+.+. +.|...+......+ ...+.+++.+.+.|||||++++.+. .....+.+..++++.
T Consensus 321 ~Pcs~~G~~~--------~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~- 391 (427)
T PRK10901 321 APCSATGVIR--------RHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARH- 391 (427)
T ss_pred CCCCcccccc--------cCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhC-
Confidence 9997644332 22222211111111 3456899999999999999998763 234455667777653
Q ss_pred cCCcee----------EEEEecCCCCceEEEEE
Q 017476 347 ACSFCN----------VSIVSDFAGIQRFVTGF 369 (371)
Q Consensus 347 ~~gf~~----------v~~~~Dl~g~~R~~~a~ 369 (371)
.+|.- ++++++..|.+=|.+|+
T Consensus 392 -~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~ 423 (427)
T PRK10901 392 -PDAELLDTGTPQQPGRQLLPGEEDGDGFFYAL 423 (427)
T ss_pred -CCCEEecCCCCCCCceEECCCCCCCCCeEEEE
Confidence 34532 34555555666666663
No 54
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.57 E-value=1.2e-13 Score=128.43 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=88.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||||-+++.+++.. +.++|+|+|+|+.||+.|++.+...+..+ ++|+++|+.+ ++..+.+||+|.+.-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~-g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~-LPf~D~sFD~vt~~f 127 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV-GTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAEN-LPFPDNSFDAVTISF 127 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc-CCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhh-CCCCCCccCEEEeee
Confidence 57899999999999999999997 58899999999999999999999988887 9999999954 666678999999820
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
-.++ ..++...|++++|+|||||++++
T Consensus 128 --------------glrn------------v~d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 128 --------------GLRN------------VTDIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred --------------hhhc------------CCCHHHHHHHHHHhhcCCeEEEE
Confidence 0111 23466899999999999998766
No 55
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.57 E-value=5.6e-14 Score=142.19 Aligned_cols=144 Identities=18% Similarity=0.266 Sum_probs=107.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|..+..++..++++++|+|+|+|+.+++.+++|+++.|+.+ ++++++|+.+......++||.|++||
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCCEEEECC
Confidence 46799999999999999999987667899999999999999999999999864 99999998653222346899999999
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcH-HHHHHHHHHHhcccccCcEEEEEECCc---CcHHHHHHHHhc
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGL-DYLLHLCNGTASMLKPGGFFAFETNGE---KQCKFLKNYLEN 344 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl-~~~~~il~~a~~~LkpgG~lvle~~~~---~q~~~v~~~l~~ 344 (371)
||...+.+.. .+++..+.+...+ .++ ...++++..+.++|||||.+++.+... ...+.|..++++
T Consensus 316 PCsg~G~~~~-~p~~~~~~~~~~~----~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 316 PCTSLGTARN-HPEVLRRVNKEDF----KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred CCCCCccccC-ChHHHHhCCHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 9987655322 3344333222110 112 244689999999999999999987432 234455666664
No 56
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.56 E-value=7e-14 Score=142.20 Aligned_cols=162 Identities=20% Similarity=0.272 Sum_probs=114.7
Q ss_pred eeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 017476 165 VEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG 244 (371)
Q Consensus 165 v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g 244 (371)
..+|.+.....+..++-.++. ..++.+|||+|||+|..+..+++.++..++|+|+|+|+.+++.+++|+++.|
T Consensus 227 ~~~G~~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g 299 (445)
T PRK14904 227 LKLGLVSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG 299 (445)
T ss_pred HhCcEEEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC
Confidence 445555555445554443332 2346799999999999999999876556799999999999999999999999
Q ss_pred CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccc
Q 017476 245 LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLK 320 (371)
Q Consensus 245 l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~Lk 320 (371)
+. +++++++|+.+... .+.||.|++|||+.....+. ..|..........+ .....++..+.+.|+
T Consensus 300 ~~-~v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~--------r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk 368 (445)
T PRK14904 300 IT-IIETIEGDARSFSP--EEQPDAILLDAPCTGTGVLG--------RRAELRWKLTPEKLAELVGLQAELLDHAASLLK 368 (445)
T ss_pred CC-eEEEEeCccccccc--CCCCCEEEEcCCCCCcchhh--------cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 86 49999999876543 36899999999997655432 12221111111111 234579999999999
Q ss_pred cCcEEEEEECCcC---cHHHHHHHHhc
Q 017476 321 PGGFFAFETNGEK---QCKFLKNYLEN 344 (371)
Q Consensus 321 pgG~lvle~~~~~---q~~~v~~~l~~ 344 (371)
|||++++.+.... ..+.|..+++.
T Consensus 369 pgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 369 PGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 9999999884332 34455677775
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.56 E-value=1.1e-13 Score=114.84 Aligned_cols=104 Identities=28% Similarity=0.397 Sum_probs=85.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|++|++.+++. +++++.+|+........++||.|++..
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhcCCCCEEEECC
Confidence 45699999999999999999985 6689999999999999999999998876 489999987643333346899999842
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+ ...+..+++.+.+.|+|||++++..
T Consensus 97 ~-----------------------------~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 97 S-----------------------------GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred c-----------------------------chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 1 1123478999999999999999875
No 58
>PLN02244 tocopherol O-methyltransferase
Probab=99.55 E-value=1.7e-13 Score=134.73 Aligned_cols=107 Identities=26% Similarity=0.313 Sum_probs=86.8
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
.++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|+++++..++.++++++.+|+.+. +..+++||+|+++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-PFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-CCCCCCccEEEEC
Confidence 356799999999999999999975 5799999999999999999999999887899999998663 3335789999994
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
-- ..|-+ ....+++++.++|||||.+++..
T Consensus 194 ~~--------------~~h~~------------d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ES--------------GEHMP------------DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred Cc--------------hhccC------------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 21 12211 13368888999999999999854
No 59
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.55 E-value=5.9e-14 Score=126.87 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=106.0
Q ss_pred cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (371)
Q Consensus 157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A 236 (371)
.|.+..+...++.. -||.+..+.+.+...+.. ...+.+|||++||+|.+++.++.+ ....|++||.++.+++.+
T Consensus 15 ~~kg~~l~~p~~~~-~rpt~~~vrea~f~~l~~---~~~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~ 88 (189)
T TIGR00095 15 WRGGRLLKLPPGGS-TRPTTRVVRELFFNILRP---EIQGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTL 88 (189)
T ss_pred hhCCcccCCCCCCC-CCCchHHHHHHHHHHHHH---hcCCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHH
Confidence 35666666655543 478888888877776621 134679999999999999999986 335899999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcCcccccccC---CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476 237 AFNAQRYGLQDIIEIRQGSWFGKLKDV---EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313 (371)
Q Consensus 237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~ 313 (371)
++|++.+++.++++++++|.++.+... ...||+|+.+|||.... . ...+ ..+.
T Consensus 89 ~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~-----~------------------~~~l-~~l~ 144 (189)
T TIGR00095 89 KENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGA-----L------------------QALL-ELCE 144 (189)
T ss_pred HHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCc-----H------------------HHHH-HHHH
Confidence 999999998878999999997654322 12489999999995311 0 0112 2222
Q ss_pred HHhcccccCcEEEEEEC
Q 017476 314 GTASMLKPGGFFAFETN 330 (371)
Q Consensus 314 ~a~~~LkpgG~lvle~~ 330 (371)
. ..+|+++|.+++|+.
T Consensus 145 ~-~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 145 N-NWILEDTVLIVVEED 160 (189)
T ss_pred H-CCCCCCCeEEEEEec
Confidence 2 458999999999994
No 60
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.55 E-value=1.9e-13 Score=133.60 Aligned_cols=164 Identities=18% Similarity=0.094 Sum_probs=115.2
Q ss_pred ccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476 156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (371)
Q Consensus 156 ~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~ 235 (371)
.+|++..-.+-..++.|++.++.+.+.+++.. . -..++.+|||+|||+|.++..+++.+ +..+|+++|+|+++++.
T Consensus 77 ~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~-~--l~~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~ 152 (340)
T PLN02490 77 FWFYRFLSIVYDHIINPGHWTEDMRDDALEPA-D--LSDRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAK 152 (340)
T ss_pred eeEccceeeecCCCeecCcchHHHHHHHHhhc-c--cCCCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHH
Confidence 33444333344445557777888887766644 1 11235699999999999999999876 56799999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315 (371)
Q Consensus 236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a 315 (371)
|+++... .+++++.+|+.+ ++...+.||+|++|.... |-+ ....+++++
T Consensus 153 A~~k~~~----~~i~~i~gD~e~-lp~~~~sFDvVIs~~~L~--------------~~~------------d~~~~L~e~ 201 (340)
T PLN02490 153 AKQKEPL----KECKIIEGDAED-LPFPTDYADRYVSAGSIE--------------YWP------------DPQRGIKEA 201 (340)
T ss_pred HHHhhhc----cCCeEEeccHHh-CCCCCCceeEEEEcChhh--------------hCC------------CHHHHHHHH
Confidence 9998642 247899999865 332346899999964432 111 122678999
Q ss_pred hcccccCcEEEEEECC----------------cCcHHHHHHHHhccccCCceeEEEEe
Q 017476 316 ASMLKPGGFFAFETNG----------------EKQCKFLKNYLENDSACSFCNVSIVS 357 (371)
Q Consensus 316 ~~~LkpgG~lvle~~~----------------~~q~~~v~~~l~~~~~~gf~~v~~~~ 357 (371)
.+.|+|||.+++.... ..+.+++.+++++ .||..+++..
T Consensus 202 ~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~---aGF~~V~i~~ 256 (340)
T PLN02490 202 YRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTK---AGFKDVKLKR 256 (340)
T ss_pred HHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHH---CCCeEEEEEE
Confidence 9999999998774311 1245777888885 7899888743
No 61
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.55 E-value=1.6e-13 Score=124.36 Aligned_cols=129 Identities=21% Similarity=0.279 Sum_probs=95.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|.+++.+++.. ++.+|+|+|+|+++++.|++|++.+++. +++++.+|..+.+......+|.++.+.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 46799999999999999999764 6789999999999999999999999885 499999998653332223456555420
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS 354 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~ 354 (371)
+ ..+..+++.+.++|+|||.+++......+...+.+.+++....++..++
T Consensus 118 --------------------------~----~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (196)
T PRK07402 118 --------------------------G----RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQ 167 (196)
T ss_pred --------------------------C----cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEE
Confidence 0 1134788888999999999999986555555566666653234565555
Q ss_pred E
Q 017476 355 I 355 (371)
Q Consensus 355 ~ 355 (371)
+
T Consensus 168 ~ 168 (196)
T PRK07402 168 A 168 (196)
T ss_pred E
Confidence 5
No 62
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.55 E-value=1.8e-13 Score=138.78 Aligned_cols=165 Identities=20% Similarity=0.254 Sum_probs=117.6
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---cCCCceeEE
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGV 270 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---~~~~~fDlI 270 (371)
.++.+|||+|||+|..+..+++..++.++|+|+|+++.+++.+++|++++|+.+ ++++++|..+... ...++||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEE
Confidence 346799999999999999999976556799999999999999999999999975 9999999865431 123689999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEECC---cCcHHHHHHHHh
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETNG---EKQCKFLKNYLE 343 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~~---~~q~~~v~~~l~ 343 (371)
++|||+...+.+. +.|...+.-....+ ..-..+++.+.+.|||||.+++.+.. ....+.|..+++
T Consensus 330 l~DaPCSg~G~~~--------r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~ 401 (434)
T PRK14901 330 LLDAPCSGLGTLH--------RHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLA 401 (434)
T ss_pred EEeCCCCcccccc--------cCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHH
Confidence 9999986544332 22221111111111 12358999999999999999887632 244556677777
Q ss_pred ccccCCceeEE----EEecCCCCceEEEEE
Q 017476 344 NDSACSFCNVS----IVSDFAGIQRFVTGF 369 (371)
Q Consensus 344 ~~~~~gf~~v~----~~~Dl~g~~R~~~a~ 369 (371)
+. .+|.-+. ++++..|.+=|.+|+
T Consensus 402 ~~--~~~~~~~~~~~~~P~~~~~dGfF~a~ 429 (434)
T PRK14901 402 RH--PDWKLEPPKQKIWPHRQDGDGFFMAV 429 (434)
T ss_pred hC--CCcEecCCCCccCCCCCCCCcEEEEE
Confidence 63 4575332 455566777777764
No 63
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.54 E-value=3.4e-13 Score=119.78 Aligned_cols=120 Identities=23% Similarity=0.306 Sum_probs=98.2
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
...++.+++|+|||||.+++.++.. +|..+|+|+|.++++++..++|+++.|++ +++++.||.-+.+.... ++|.|+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~~L~~~~-~~daiF 107 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPEALPDLP-SPDAIF 107 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchHhhcCCC-CCCEEE
Confidence 4456789999999999999999964 69999999999999999999999999965 59999999988877643 788888
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
.+ |. ..+..+++.+..+|+|||++++.....+......+.+++
T Consensus 108 IG---------------------------Gg---~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~ 150 (187)
T COG2242 108 IG---------------------------GG---GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQ 150 (187)
T ss_pred EC---------------------------CC---CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHH
Confidence 62 21 234578899999999999999988544455555566665
No 64
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.54 E-value=3.2e-13 Score=136.60 Aligned_cols=142 Identities=15% Similarity=0.253 Sum_probs=104.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsN 273 (371)
++.+|||+|||+|..+..+++.. +.++|+|+|+++.+++.+++|+++.|+..++.+..+|...... ...++||.|++|
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 56799999999999999999986 4689999999999999999999999987455667788754321 013679999999
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcH----HHHHHHHHHHhcccccCcEEEEEECCc---CcHHHHHHHHhcc
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGL----DYLLHLCNGTASMLKPGGFFAFETNGE---KQCKFLKNYLEND 345 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl----~~~~~il~~a~~~LkpgG~lvle~~~~---~q~~~v~~~l~~~ 345 (371)
||+...+.+.. .|........+.+ ..-+.++..+.++|||||.+++.+... ...+.|..++++.
T Consensus 317 aPcSg~G~~~~--------~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 317 APCSATGVIRR--------HPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred CCCCCCccccc--------CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 99987655432 2222211111111 234689999999999999999976433 3555667777753
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.53 E-value=2.3e-13 Score=124.50 Aligned_cols=116 Identities=21% Similarity=0.315 Sum_probs=90.3
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
.++..+++.+ ...++.+|||+|||+|.++..+++.+++.++|+++|+++++++.|++|+..+++.++++++.+|..
T Consensus 59 ~~~~~~~~~l----~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 59 HMVAMMCELI----EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHHhc----CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 3455555554 223467999999999999999998765567999999999999999999999998777999999997
Q ss_pred cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
+.+.. .++||+|+++-... .+.+.+.+.|+|||++++-..
T Consensus 135 ~~~~~-~~~fD~Ii~~~~~~--------------------------------~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 135 RGLEK-HAPFDAIIVTAAAS--------------------------------TIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred cCCcc-CCCccEEEEccCcc--------------------------------hhhHHHHHhcCcCcEEEEEEc
Confidence 65543 46899999964321 122345578999999998773
No 66
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=99.52 E-value=6.7e-13 Score=126.89 Aligned_cols=207 Identities=20% Similarity=0.305 Sum_probs=108.8
Q ss_pred cceee-EeeCCccccc-chHHHHHHHHHHHhhhcCC-CCCCCeEEEECCcccHHH-HHHHHHhCCCcEEEEEeCCHHHHH
Q 017476 159 RDLVL-SVEEGVFIPR-PETELMVDLVSDVLVRDND-GLRDGFWVDLGTGSGAIA-IGIARVLGSKGSIIAVDLNPLAAA 234 (371)
Q Consensus 159 ~~~~~-~v~~~vliPr-p~te~lv~~~~~~~~~~~~-~~~~~~VLDlG~GsG~~a-l~la~~~~~~~~V~gvDis~~al~ 234 (371)
+++++ .+.++.|.|. |.---++.++.+.+..... .....++||+|||..++- +..++. .+++++|+|+++.+++
T Consensus 63 fgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~--~~W~fvaTdID~~sl~ 140 (299)
T PF05971_consen 63 FGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKL--YGWSFVATDIDPKSLE 140 (299)
T ss_dssp H--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHH--H--EEEEEES-HHHHH
T ss_pred cCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhh--cCCeEEEecCCHHHHH
Confidence 46776 7889999997 6666777888777732211 112458999999999874 444444 3799999999999999
Q ss_pred HHHHHHHHc-CCCCcEEEEEcC----cccccccCCCceeEEEEcCCCCCCCCcccch--hhh---cc-----cCcccccc
Q 017476 235 VAAFNAQRY-GLQDIIEIRQGS----WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQ--VEV---GK-----HEPRLALD 299 (371)
Q Consensus 235 ~A~~n~~~~-gl~~~v~~~~gD----~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~--~ev---~~-----~ep~~aL~ 299 (371)
.|++|++++ +++++|+++... ++..+....+.||+.+|||||..+.+-..-. ... .+ ..|..+..
T Consensus 141 ~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~ 220 (299)
T PF05971_consen 141 SARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFT 220 (299)
T ss_dssp HHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS------------------------------
T ss_pred HHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCccccCC
Confidence 999999999 999999998653 4444433356899999999998765422110 010 01 14555544
Q ss_pred CCCCc-------HHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecC-CCCceEEEEEe
Q 017476 300 GGVDG-------LDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDF-AGIQRFVTGFR 370 (371)
Q Consensus 300 gg~dG-------l~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl-~g~~R~~~a~~ 370 (371)
|...- +.++.+++++...+=+.=.|+---++.......+.+.|++. +-.++.+..-. ....|.++|+.
T Consensus 221 G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~~~L~~~---~~~~~~~~e~~QG~t~rw~lAWs 296 (299)
T PF05971_consen 221 GQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLKKELKKL---GATNYKVTEMCQGQTKRWILAWS 296 (299)
T ss_dssp --TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHHHHHHHT---T-SEEEEEEEEETTEEEEEEEEE
T ss_pred CCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHHHHHHhc---CCceEEEEEccCCceEEEEEEEe
Confidence 43322 57888999888755443333333445566778888888863 44455444333 34678888874
No 67
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.52 E-value=2.5e-13 Score=124.99 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
.++..+++.+ ...++.+|||+|||+|.++..+++..++.++|+++|+++++++.|++|++.+++. +++++.+|..
T Consensus 64 ~~~~~~~~~l----~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~ 138 (215)
T TIGR00080 64 HMVAMMTELL----ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGT 138 (215)
T ss_pred HHHHHHHHHh----CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcc
Confidence 3455555555 2345679999999999999999998645678999999999999999999999985 5999999997
Q ss_pred cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
+.... .++||+|+++++.. .+.+.+.+.|+|||++++-.+
T Consensus 139 ~~~~~-~~~fD~Ii~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 139 QGWEP-LAPYDRIYVTAAGP--------------------------------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred cCCcc-cCCCCEEEEcCCcc--------------------------------cccHHHHHhcCcCcEEEEEEc
Confidence 65433 36899999975421 112334578999999999873
No 68
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.52 E-value=1.9e-13 Score=128.97 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=84.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
.+.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...++.++++++++|+.+......++||+|+++-
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4569999999999999999985 4799999999999999999999998877899999998653322347899999953
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.+ .| +.....+++.+.++|||||.+++..
T Consensus 121 vl--------------~~------------~~~~~~~l~~~~~~LkpgG~l~i~~ 149 (255)
T PRK11036 121 VL--------------EW------------VADPKSVLQTLWSVLRPGGALSLMF 149 (255)
T ss_pred HH--------------Hh------------hCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 32 11 1112367888999999999998753
No 69
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.51 E-value=6.9e-13 Score=126.14 Aligned_cols=132 Identities=28% Similarity=0.365 Sum_probs=100.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|..++.+++.+++..+|+|+|+++.+++.|++|....++. +++++.+|+.+ ++..++.||+|++|-
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~-l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEA-LPVADNSVDVIISNC 154 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhh-CCCCCCceeEEEEcC
Confidence 4679999999999998888887656679999999999999999999988875 59999999865 332346899999974
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC----------------------Cc
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN----------------------GE 332 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~----------------------~~ 332 (371)
-+. +.| ....+++++.++|||||++++... +.
T Consensus 155 v~~--------------~~~------------d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (272)
T PRK11873 155 VIN--------------LSP------------DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGA 208 (272)
T ss_pred ccc--------------CCC------------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCC
Confidence 321 111 123678889999999999998421 12
Q ss_pred CcHHHHHHHHhccccCCceeEEEEe
Q 017476 333 KQCKFLKNYLENDSACSFCNVSIVS 357 (371)
Q Consensus 333 ~q~~~v~~~l~~~~~~gf~~v~~~~ 357 (371)
.+.+++.+++++ .||..+++..
T Consensus 209 ~~~~e~~~~l~~---aGf~~v~i~~ 230 (272)
T PRK11873 209 LQEEEYLAMLAE---AGFVDITIQP 230 (272)
T ss_pred CCHHHHHHHHHH---CCCCceEEEe
Confidence 345567777775 6898876643
No 70
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.51 E-value=2.4e-13 Score=126.92 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 017476 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (371)
Q Consensus 175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g 254 (371)
++..++..+.... ++++|||+|||+|..++.++..+.++++|+++|+++++++.|++|++.+|+.++++++.+
T Consensus 55 ~~g~~L~~l~~~~-------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~g 127 (234)
T PLN02781 55 DEGLFLSMLVKIM-------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQS 127 (234)
T ss_pred HHHHHHHHHHHHh-------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 4445555555443 466999999999999999998775678999999999999999999999999989999999
Q ss_pred CcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 255 SWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 255 D~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
|+.+.++.. .++||+|+.|.+ -..|..+++.+.+.|+|||.+++..
T Consensus 128 da~~~L~~l~~~~~~~~fD~VfiDa~-----------------------------k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 128 DALSALDQLLNNDPKPEFDFAFVDAD-----------------------------KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred cHHHHHHHHHhCCCCCCCCEEEECCC-----------------------------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 998765432 368999998632 1234467788889999999999854
No 71
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.50 E-value=4.3e-13 Score=119.70 Aligned_cols=146 Identities=22% Similarity=0.322 Sum_probs=112.2
Q ss_pred cccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476 157 HWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (371)
Q Consensus 157 ~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A 236 (371)
.|.+..+.+.++-- -||.|..+-+.+-.++... ...+.++||+.+|||++++.++.+ ...+++.||.|..++...
T Consensus 8 ~~kgr~L~~p~~~~-~RPT~drVREalFNil~~~--~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l 82 (187)
T COG0742 8 KYKGRKLKTPDGPG-TRPTTDRVREALFNILAPD--EIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKIL 82 (187)
T ss_pred cccCCcccCCCCCC-cCCCchHHHHHHHHhcccc--ccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHH
Confidence 45677777766532 3889999999988888221 256889999999999999999986 467999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcCcccccccCCCc--eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHH
Q 017476 237 AFNAQRYGLQDIIEIRQGSWFGKLKDVEGK--LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNG 314 (371)
Q Consensus 237 ~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~--fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~ 314 (371)
++|++..++..+++++..|....+.....+ ||+|+.+|||-.. . ++. ...-+.-.
T Consensus 83 ~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~-l---~~~-------------------~~~~~~~~ 139 (187)
T COG0742 83 KENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKG-L---LDK-------------------ELALLLLE 139 (187)
T ss_pred HHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccc-h---hhH-------------------HHHHHHHH
Confidence 999999998888999999998665544444 9999999999611 0 000 01111112
Q ss_pred HhcccccCcEEEEEEC
Q 017476 315 TASMLKPGGFFAFETN 330 (371)
Q Consensus 315 a~~~LkpgG~lvle~~ 330 (371)
-..+|+|+|.+++|++
T Consensus 140 ~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 140 ENGWLKPGALIVVEHD 155 (187)
T ss_pred hcCCcCCCcEEEEEeC
Confidence 4578999999999994
No 72
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.50 E-value=8.3e-13 Score=118.36 Aligned_cols=152 Identities=22% Similarity=0.214 Sum_probs=101.7
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcE---------EEEEeCCHHHHHHHHHHHHH
Q 017476 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS---------IIAVDLNPLAAAVAAFNAQR 242 (371)
Q Consensus 172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~---------V~gvDis~~al~~A~~n~~~ 242 (371)
|.+-.+.+...++... ...++..++|..||||.+.+..+... .+.. ++|+|+++++++.|++|++.
T Consensus 9 ~a~L~~~lA~~ll~la----~~~~~~~vlDP~CGsGtiliEaa~~~-~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLA----GWRPGDVVLDPFCGSGTILIEAALMG-ANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp STSS-HHHHHHHHHHT----T--TTS-EEETT-TTSHHHHHHHHHH-TTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh----CCCCCCEEeecCCCCCHHHHHHHHHh-hCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 4455566666666554 23356799999999999999998875 4444 89999999999999999999
Q ss_pred cCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccC
Q 017476 243 YGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG 322 (371)
Q Consensus 243 ~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkpg 322 (371)
.++.+.+.+.+.|+.+.. ...+.+|.||+||||...-.. .. +....|+.+++.+.+.|++
T Consensus 84 ag~~~~i~~~~~D~~~l~-~~~~~~d~IvtnPPyG~r~~~---~~---------------~~~~ly~~~~~~~~~~l~~- 143 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELP-LPDGSVDAIVTNPPYGRRLGS---KK---------------DLEKLYRQFLRELKRVLKP- 143 (179)
T ss_dssp TT-CGGEEEEE--GGGGG-GTTSBSCEEEEE--STTSHCH---HH---------------HHHHHHHHHHHHHHCHSTT-
T ss_pred cccCCceEEEecchhhcc-cccCCCCEEEECcchhhhccC---HH---------------HHHHHHHHHHHHHHHHCCC-
Confidence 999988999999997643 335789999999999643110 00 1146788999999999999
Q ss_pred cEEEEEECCcCcHHHHHHHHhccccCCceeEEE
Q 017476 323 GFFAFETNGEKQCKFLKNYLENDSACSFCNVSI 355 (371)
Q Consensus 323 G~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~ 355 (371)
..+++.. +... +.+.+.. .++...+.
T Consensus 144 ~~v~l~~-~~~~---~~~~~~~---~~~~~~~~ 169 (179)
T PF01170_consen 144 RAVFLTT-SNRE---LEKALGL---KGWRKRKL 169 (179)
T ss_dssp CEEEEEE-SCCC---HHHHHTS---TTSEEEEE
T ss_pred CEEEEEE-CCHH---HHHHhcc---hhhceEEE
Confidence 4444444 3332 4555553 34544443
No 73
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=3.9e-13 Score=124.43 Aligned_cols=128 Identities=22% Similarity=0.336 Sum_probs=111.6
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
...++.+|+|.|+|||+++.+||+.+++.++|+.+|+.++.++.|++|++..++.+++.+..+|..+.... ..||.|+
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~--~~vDav~ 168 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE--EDVDAVF 168 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc--cccCEEE
Confidence 45578899999999999999999988888999999999999999999999999999999999999887654 4899999
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC 351 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~ 351 (371)
.+-|= |. ..++.+.+.|+|||.+++-.+...|.+.+...|++ .||.
T Consensus 169 LDmp~-----------------PW--------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~---~g~~ 214 (256)
T COG2519 169 LDLPD-----------------PW--------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRE---RGFV 214 (256)
T ss_pred EcCCC-----------------hH--------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh---cCcc
Confidence 96441 11 67888999999999999999888898888888886 5788
Q ss_pred eEEE
Q 017476 352 NVSI 355 (371)
Q Consensus 352 ~v~~ 355 (371)
+++.
T Consensus 215 ~ie~ 218 (256)
T COG2519 215 DIEA 218 (256)
T ss_pred chhh
Confidence 7654
No 74
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.49 E-value=6.7e-13 Score=124.31 Aligned_cols=132 Identities=23% Similarity=0.326 Sum_probs=105.9
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-cc-cCCCceeE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LK-DVEGKLSG 269 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-l~-~~~~~fDl 269 (371)
+..++.+|+|.|+|||+++.++++.++|.++|+..|..++..+.|++|++.+|+.+++++.+.|+.+. .. ..+..+|.
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Da 116 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDA 116 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEE
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccE
Confidence 55678899999999999999999999899999999999999999999999999998999999999643 21 22468999
Q ss_pred EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccc-ccCcEEEEEECCcCcHHHHHHHHhccccC
Q 017476 270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML-KPGGFFAFETNGEKQCKFLKNYLENDSAC 348 (371)
Q Consensus 270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~L-kpgG~lvle~~~~~q~~~v~~~l~~~~~~ 348 (371)
|+.+-|- |. ..+..+.+.| ++||++++-.+...|.+.+.+.|++ .
T Consensus 117 vfLDlp~-----------------Pw--------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~---~ 162 (247)
T PF08704_consen 117 VFLDLPD-----------------PW--------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALRE---H 162 (247)
T ss_dssp EEEESSS-----------------GG--------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHH---T
T ss_pred EEEeCCC-----------------HH--------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHH---C
Confidence 9997552 22 3556777889 8999999999888888888888886 6
Q ss_pred CceeEEEEe
Q 017476 349 SFCNVSIVS 357 (371)
Q Consensus 349 gf~~v~~~~ 357 (371)
||.+|+++-
T Consensus 163 gf~~i~~~E 171 (247)
T PF08704_consen 163 GFTDIETVE 171 (247)
T ss_dssp TEEEEEEEE
T ss_pred CCeeeEEEE
Confidence 899887653
No 75
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.49 E-value=5.9e-13 Score=131.95 Aligned_cols=142 Identities=19% Similarity=0.275 Sum_probs=107.4
Q ss_pred eeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 161 LVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 161 ~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
+.|.++++.|+. +..++.+++++.+++ . . .+.++||++||+|.+++.+++.. .+|+|||+++.+++.|++
T Consensus 175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~-~---~-~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~ 246 (362)
T PRK05031 175 FIYRQVENSFTQPNAAVNEKMLEWALDAT-K---G-SKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQY 246 (362)
T ss_pred EEEEeCCCCeeccCHHHHHHHHHHHHHHh-h---c-CCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHH
Confidence 678889999984 466889999988876 2 1 12479999999999999999863 589999999999999999
Q ss_pred HHHHcCCCCcEEEEEcCcccccccC---------------CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCC
Q 017476 239 NAQRYGLQDIIEIRQGSWFGKLKDV---------------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVD 303 (371)
Q Consensus 239 n~~~~gl~~~v~~~~gD~~~~l~~~---------------~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~d 303 (371)
|+..+++. +++++.+|+.+.+... ..+||+|+.||||.. +..
T Consensus 247 N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G------~~~---------------- 303 (362)
T PRK05031 247 NIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG------LDD---------------- 303 (362)
T ss_pred HHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCC------CcH----------------
Confidence 99999986 5999999987654321 125899999999831 111
Q ss_pred cHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHH
Q 017476 304 GLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYL 342 (371)
Q Consensus 304 Gl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l 342 (371)
.+++.+.+ ++++++++++.......+..+.
T Consensus 304 ------~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~ 333 (362)
T PRK05031 304 ------ETLKLVQA---YERILYISCNPETLCENLETLS 333 (362)
T ss_pred ------HHHHHHHc---cCCEEEEEeCHHHHHHHHHHHc
Confidence 23333322 6899999997655555555543
No 76
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.48 E-value=9.2e-13 Score=118.65 Aligned_cols=138 Identities=23% Similarity=0.302 Sum_probs=97.2
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-------ccCCCc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-------KDVEGK 266 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-------~~~~~~ 266 (371)
.++.+|||+|||+|.++..+++.+.+..+|+|+|+|+.+ ... +++++++|+.+.. ....++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~-~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIE-NVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCC-CceEEEeeCCChhHHHHHHHHhCCCC
Confidence 457799999999999999999876456789999999854 122 3889999986531 011357
Q ss_pred eeEEEEcC--CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 267 LSGVVSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 267 fDlIvsNP--PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
||+|++|+ ++........+. .++....+++.+.+.|+|||.+++++........+...+++
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~-----------------~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~ 161 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLR-----------------SIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK 161 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHH-----------------HHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh
Confidence 99999985 332111110000 02335678999999999999999987444455556666653
Q ss_pred cccCCceeEEEEecCCCCce
Q 017476 345 DSACSFCNVSIVSDFAGIQR 364 (371)
Q Consensus 345 ~~~~gf~~v~~~~Dl~g~~R 364 (371)
.|..+++++|+.|+.+
T Consensus 162 ----~~~~~~~~~~~~~~~~ 177 (188)
T TIGR00438 162 ----LFEKVKVTKPQASRKR 177 (188)
T ss_pred ----hhceEEEeCCCCCCcc
Confidence 4889999999999764
No 77
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.47 E-value=7.2e-13 Score=129.00 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=83.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|.++..+++. +.+|+|||+++++++.|++++...+...+++++++|+.+ +....++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~-l~~~~~~FD~Vi~-- 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK-LADEGRKFDAVLS-- 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH-hhhccCCCCEEEE--
Confidence 4569999999999999999873 579999999999999999988776655579999999854 3333478999999
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.++..|-+ ....+++.+.++|||||.+++..
T Consensus 205 ------------~~vLeHv~------------d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 205 ------------LEVIEHVA------------NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred ------------hhHHHhcC------------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 23444422 23478888999999999999875
No 78
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3.4e-12 Score=113.24 Aligned_cols=141 Identities=21% Similarity=0.326 Sum_probs=96.0
Q ss_pred cccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (371)
Q Consensus 171 iPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~ 250 (371)
+|.+.+..++..+. . .....++.|+|+|||||.+++.++.. ...+|+|||+++++++.+++|+.+. ..++.
T Consensus 26 Tp~~~Aa~il~~a~-~----~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l--~g~v~ 96 (198)
T COG2263 26 TPAPLAAYILWVAY-L----RGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEEL--LGDVE 96 (198)
T ss_pred CChHHHHHHHHHHH-H----cCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhh--CCceE
Confidence 34444444444433 1 23456778999999999999999884 4579999999999999999999983 35699
Q ss_pred EEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 251 IRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 251 ~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
|+.+|..+. .+++|.+++||||... .+| ++ . .++..|.+.- -++..++
T Consensus 97 f~~~dv~~~----~~~~dtvimNPPFG~~----------~rh-aD---------r----~Fl~~Ale~s----~vVYsiH 144 (198)
T COG2263 97 FVVADVSDF----RGKFDTVIMNPPFGSQ----------RRH-AD---------R----PFLLKALEIS----DVVYSIH 144 (198)
T ss_pred EEEcchhhc----CCccceEEECCCCccc----------ccc-CC---------H----HHHHHHHHhh----heEEEee
Confidence 999998553 4789999999999643 122 11 1 3444443332 3455554
Q ss_pred CcCcHHHHHHHHhccccCCceeEEE
Q 017476 331 GEKQCKFLKNYLENDSACSFCNVSI 355 (371)
Q Consensus 331 ~~~q~~~v~~~l~~~~~~gf~~v~~ 355 (371)
.....+.+.+.... .|+....+
T Consensus 145 ~a~~~~f~~~~~~~---~G~~v~~~ 166 (198)
T COG2263 145 KAGSRDFVEKFAAD---LGGTVTHI 166 (198)
T ss_pred ccccHHHHHHHHHh---cCCeEEEE
Confidence 56666677777765 55544333
No 79
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=6.2e-13 Score=125.95 Aligned_cols=108 Identities=25% Similarity=0.298 Sum_probs=91.6
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
...++.+|||+|||.|.+++.+|+++ +.+|+|+++|+++.+.+++.++..|++++++++..|+.+. .++||-||
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~----~e~fDrIv 142 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF----EEPFDRIV 142 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc----ccccceee
Confidence 55678899999999999999999986 7899999999999999999999999998899999999653 35699999
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
| -++..| -|.+.+..+++.+.++|+|||.+++..
T Consensus 143 S--------------vgmfEh----------vg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 143 S--------------VGMFEH----------VGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred e--------------hhhHHH----------hCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 9 111111 134567789999999999999998865
No 80
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.46 E-value=6.4e-12 Score=116.15 Aligned_cols=147 Identities=21% Similarity=0.280 Sum_probs=110.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|.++..++...++..+++++|+++.+++.+++++..++..+++.++.+|+.+.. ...+.||+|+++-
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEec
Confidence 457999999999999999999752268999999999999999999887766667999999987643 2246899999831
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc-C--------------------
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE-K-------------------- 333 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~-~-------------------- 333 (371)
-. .+ ......+++.+.+.|+|||.+++..... .
T Consensus 130 ~l--------------~~------------~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (239)
T PRK00216 130 GL--------------RN------------VPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIG 183 (239)
T ss_pred cc--------------cc------------CCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHH
Confidence 10 11 1123467888899999999887642111 0
Q ss_pred ---------------------cHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476 334 ---------------------QCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ 371 (371)
Q Consensus 334 ---------------------q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~ 371 (371)
..+.+.+++++ .||..+++.....|.--+++|+|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 184 KLISKNAEAYSYLAESIRAFPDQEELAAMLEE---AGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHh---CCCceeeeeeeecCcEEEEEEecC
Confidence 12345666765 889999999988898888888875
No 81
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.46 E-value=2.1e-12 Score=124.12 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=81.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++++|||+|||+|..++.+++. +.+|+|+|+|+.+++.+++|+...++ ++++...|+.+.. ..++||+|+++.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--IQEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--ccCCccEEEEcc
Confidence 3569999999999999999984 57999999999999999999998887 3888888886532 247899999964
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
.+. .+. -+....+++.+.++|+|||++++.
T Consensus 193 vl~------~l~------------------~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 193 VLM------FLN------------------RERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred hhh------hCC------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 321 010 123457889999999999996653
No 82
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.46 E-value=1e-12 Score=120.80 Aligned_cols=115 Identities=20% Similarity=0.288 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
.++..+++.+ ...++.+|||+|||+|.++..+++..+++++|+++|+++++++.|++|++.+++. +++++++|..
T Consensus 63 ~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~ 137 (212)
T PRK13942 63 HMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGT 137 (212)
T ss_pred HHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcc
Confidence 3444455444 2335679999999999999999987655679999999999999999999999875 4999999987
Q ss_pred cccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 258 GKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 258 ~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
+.... .+.||+|+++-- . . .+.+...+.|||||++++..+
T Consensus 138 ~~~~~-~~~fD~I~~~~~------~--------~------------------~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 138 LGYEE-NAPYDRIYVTAA------G--------P------------------DIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred cCCCc-CCCcCEEEECCC------c--------c------------------cchHHHHHhhCCCcEEEEEEc
Confidence 65433 368999998410 0 0 122234468999999999884
No 83
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.46 E-value=1.1e-12 Score=118.95 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=81.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
.+.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.+++++...++. +++..+|.... . ..++||+|+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~~~~fD~I~~~~ 102 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-LNEDYDFIFSTV 102 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-ccCCCCEEEEec
Confidence 4579999999999999999984 479999999999999999999888874 77888887432 1 235799999987
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
++.... .+....+++.+.++|+|||++++.
T Consensus 103 ~~~~~~------------------------~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 103 VFMFLQ------------------------AGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred ccccCC------------------------HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 763211 123447889999999999985554
No 84
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.45 E-value=2.5e-13 Score=124.82 Aligned_cols=106 Identities=26% Similarity=0.378 Sum_probs=88.5
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
..+.+|||+|||-|.++..+|+. +++|+|+|++++++++|+..+...++. +.+.+....+... ..++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~-~~~~FDvV~c- 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS-AGGQFDVVTC- 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh-cCCCccEEEE-
Confidence 45789999999999999999995 589999999999999999999998875 6777777655333 2379999999
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG 331 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~ 331 (371)
-||..|-|. ...++..+.+++||||.+++.+.+
T Consensus 131 -------------mEVlEHv~d------------p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 131 -------------MEVLEHVPD------------PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred -------------hhHHHccCC------------HHHHHHHHHHHcCCCcEEEEeccc
Confidence 467777554 447999999999999999998753
No 85
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.45 E-value=1.9e-12 Score=119.28 Aligned_cols=128 Identities=20% Similarity=0.133 Sum_probs=97.9
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi 277 (371)
+|||+|||+|..+..+++.+ ++.+|+|+|+|+++++.|++++...|+.++++++.+|+.+... .++||+|+++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~--~~~fD~I~~~---- 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF--PDTYDLVFGF---- 74 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC--CCCCCEeehH----
Confidence 79999999999999999986 6789999999999999999999999998899999999865421 3689999983
Q ss_pred CCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---------------CcHHHHHHHH
Q 017476 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE---------------KQCKFLKNYL 342 (371)
Q Consensus 278 ~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~---------------~q~~~v~~~l 342 (371)
++..|- .....+++.+.+.|+|||++++..... .....+.+++
T Consensus 75 ----------~~l~~~------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 132 (224)
T smart00828 75 ----------EVIHHI------------KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELL 132 (224)
T ss_pred ----------HHHHhC------------CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHH
Confidence 121221 113478899999999999999854211 1134566677
Q ss_pred hccccCCceeEEEEe
Q 017476 343 ENDSACSFCNVSIVS 357 (371)
Q Consensus 343 ~~~~~~gf~~v~~~~ 357 (371)
.+ .||..++...
T Consensus 133 ~~---~Gf~~~~~~~ 144 (224)
T smart00828 133 AR---NNLRVVEGVD 144 (224)
T ss_pred HH---CCCeEEEeEE
Confidence 65 7897766543
No 86
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.45 E-value=1.1e-12 Score=125.18 Aligned_cols=110 Identities=25% Similarity=0.332 Sum_probs=83.2
Q ss_pred cCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeE
Q 017476 190 DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSG 269 (371)
Q Consensus 190 ~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDl 269 (371)
.....++.+|||+|||.|.+++.+|+++ +.+|+|+.+|++..+.|++.+++.|+++++++...|+.+. .++||.
T Consensus 57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~----~~~fD~ 130 (273)
T PF02353_consen 57 KLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL----PGKFDR 130 (273)
T ss_dssp TTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SE
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc----CCCCCE
Confidence 3355678899999999999999999986 6899999999999999999999999999999999998652 248999
Q ss_pred EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
||| -++..|- |-..+..+++.+.++|+|||.+++..
T Consensus 131 IvS--------------i~~~Ehv----------g~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 131 IVS--------------IEMFEHV----------GRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEE--------------ESEGGGT----------CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEE--------------Eechhhc----------ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999 1222221 23456789999999999999999865
No 87
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.45 E-value=2.6e-12 Score=122.73 Aligned_cols=128 Identities=23% Similarity=0.282 Sum_probs=91.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccC--CCceeEEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDV--EGKLSGVV 271 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~--~~~fDlIv 271 (371)
.+++|||+.|-||.+++.++.. ...+|++||.|..++++|++|++.||++ ++++++++|+++.+... .++||+||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g--GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG--GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT--TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 3679999999999999998873 4458999999999999999999999986 57999999998866432 46999999
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cHHHHHHHHhc
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QCKFLKNYLEN 344 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~~~v~~~l~~ 344 (371)
++||=..... + +-...|..++..+.++|+|||.|++..+... ..+.+.+.+.+
T Consensus 201 lDPPsF~k~~----------~----------~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~ 254 (286)
T PF10672_consen 201 LDPPSFAKSK----------F----------DLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAE 254 (286)
T ss_dssp E--SSEESST----------C----------EHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHH
T ss_pred ECCCCCCCCH----------H----------HHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHH
Confidence 9999542211 0 0024688999999999999999988774322 23444555543
No 88
>PRK04457 spermidine synthase; Provisional
Probab=99.45 E-value=1.3e-12 Score=123.90 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=103.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
.+++|||+|||+|.++..+++.+ |+.+|++||+++++++.|++++...+..++++++.+|..+.+....++||+|++|.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45789999999999999999986 88999999999999999999986655556799999999776655456899999973
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cHHHHHHHHhccccCCcee-
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QCKFLKNYLENDSACSFCN- 352 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~~~v~~~l~~~~~~gf~~- 352 (371)
|.... ... . -....+++.+.+.|+|||++++...+.. ....+.+.+++ -|..
T Consensus 145 -~~~~~----~~~---------~--------l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~----~F~~~ 198 (262)
T PRK04457 145 -FDGEG----IID---------A--------LCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLES----SFEGR 198 (262)
T ss_pred -CCCCC----Ccc---------c--------cCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHH----hcCCc
Confidence 21110 000 0 0124788999999999999999763322 22333444442 3753
Q ss_pred EEEEecCCCCceEEEEEe
Q 017476 353 VSIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 353 v~~~~Dl~g~~R~~~a~~ 370 (371)
+-+++...+.-.+++|.+
T Consensus 199 ~~~~~~~~~~N~v~~a~~ 216 (262)
T PRK04457 199 VLELPAESHGNVAVFAFK 216 (262)
T ss_pred EEEEecCCCccEEEEEEC
Confidence 334443333335666654
No 89
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.45 E-value=1.9e-12 Score=121.74 Aligned_cols=108 Identities=21% Similarity=0.197 Sum_probs=85.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
++.+|||+|||+|..+..+++.+ .++++|+|+|+|+.|++.|++|+..++..++++++++|+.+. +. +.+|+|++|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~~--~~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-AI--ENASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-CC--CCCCEEehh
Confidence 45699999999999999988743 367899999999999999999999888877899999998653 22 469999997
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.... .+.+ +....+++++.+.|+|||.+++..
T Consensus 133 ~~l~------~l~~------------------~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 133 FTLQ------FLEP------------------SERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hHHH------hCCH------------------HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4321 1111 123478899999999999998843
No 90
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=1.8e-12 Score=117.87 Aligned_cols=103 Identities=20% Similarity=0.220 Sum_probs=81.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|..++.+++. +.+|+|+|+|+.+++.|++++...++.+ +++..+|+.+.. ..++||+|++|-
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~~fD~I~~~~ 103 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLT--FDGEYDFILSTV 103 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCC--cCCCcCEEEEec
Confidence 4579999999999999999984 5799999999999999999999888854 899999986532 236799999964
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
.+. .++ .+....+++.+.++|+|||.+++
T Consensus 104 ~~~------~~~------------------~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 104 VLM------FLE------------------AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred chh------hCC------------------HHHHHHHHHHHHHHcCCCcEEEE
Confidence 321 011 12345788999999999999655
No 91
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.44 E-value=2.4e-12 Score=124.74 Aligned_cols=162 Identities=23% Similarity=0.347 Sum_probs=100.9
Q ss_pred cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHh------CCCcEEEEEeCCHHHHHHHHHHHHH
Q 017476 169 VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL------GSKGSIIAVDLNPLAAAVAAFNAQR 242 (371)
Q Consensus 169 vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~------~~~~~V~gvDis~~al~~A~~n~~~ 242 (371)
.+.|+..+.++++.+. ...+.+|+|.+||+|.+.+++.+.+ ....+++|+|+++.++.+|+.|+..
T Consensus 28 ~~TP~~i~~l~~~~~~--------~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLN--------PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp C---HHHHHHHHHHHT--------T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHhhhh--------ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 3568777777766651 2235589999999999999988742 2567999999999999999999988
Q ss_pred cCCCCc-EEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcc-cchhhhcccCccccccCCCCcHHHHHHHHHHHhccc
Q 017476 243 YGLQDI-IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDIS-GLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319 (371)
Q Consensus 243 ~gl~~~-v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~-~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~L 319 (371)
++.... ..+..+|.+...... .++||+|++||||....-.. ..... .+|... .......+. .++..+.+.|
T Consensus 100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~--~Fi~~~l~~L 173 (311)
T PF02384_consen 100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKD-ERFKKY---FPPKSNAEY--AFIEHALSLL 173 (311)
T ss_dssp TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTT-CCCTTC---SSSTTEHHH--HHHHHHHHTE
T ss_pred hccccccccccccccccccccccccccccccCCCCcccccccccccccc-cccccc---CCCccchhh--hhHHHHHhhc
Confidence 876443 468999987653332 46899999999998652111 11111 112111 112222333 3788888999
Q ss_pred ccCcEEEEEECC-----cCcHHHHHHHHhc
Q 017476 320 KPGGFFAFETNG-----EKQCKFLKNYLEN 344 (371)
Q Consensus 320 kpgG~lvle~~~-----~~q~~~v~~~l~~ 344 (371)
++||.+++.++. ......+++.|.+
T Consensus 174 k~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~ 203 (311)
T PF02384_consen 174 KPGGRAAIILPNGFLFSSSSEKKIRKYLLE 203 (311)
T ss_dssp EEEEEEEEEEEHHHHHGSTHHHHHHHHHHH
T ss_pred ccccceeEEecchhhhccchHHHHHHHHHh
Confidence 999998887742 1234677777664
No 92
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.43 E-value=1.1e-12 Score=123.71 Aligned_cols=99 Identities=26% Similarity=0.201 Sum_probs=79.4
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
.++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++ +++++++|+.+.. ..++||+|++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~~~~fD~v~~~ 96 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK--PKPDTDVVVSN 96 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC--CCCCceEEEEe
Confidence 356799999999999999999985 778999999999999999763 3789999986542 24689999998
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
..+.... ....+++++.+.|||||.+++.+
T Consensus 97 ~~l~~~~--------------------------d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 97 AALQWVP--------------------------EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred hhhhhCC--------------------------CHHHHHHHHHHhCCCCcEEEEEc
Confidence 6543211 12367888899999999999975
No 93
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.43 E-value=3.4e-12 Score=126.06 Aligned_cols=142 Identities=16% Similarity=0.234 Sum_probs=107.3
Q ss_pred eeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 161 LVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 161 ~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
+.+.++++.|.. ...++.+++.+.+++ . . .+.+|||+|||+|.+++.+++.. .+|+|||+++++++.|++
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~-~---~-~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~ 237 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVT-Q---G-SKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQY 237 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHh-h---c-CCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHH
Confidence 678888998883 345688888888876 2 1 12379999999999999999864 489999999999999999
Q ss_pred HHHHcCCCCcEEEEEcCcccccccC---------C------CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCC
Q 017476 239 NAQRYGLQDIIEIRQGSWFGKLKDV---------E------GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVD 303 (371)
Q Consensus 239 n~~~~gl~~~v~~~~gD~~~~l~~~---------~------~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~d 303 (371)
|++.+++.+ ++++.+|+.+.+... . .+||+|+.|||... +..
T Consensus 238 n~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G------~~~---------------- 294 (353)
T TIGR02143 238 NIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG------LDP---------------- 294 (353)
T ss_pred HHHHcCCCc-EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC------CcH----------------
Confidence 999999865 999999987654321 1 13899999999521 111
Q ss_pred cHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHH
Q 017476 304 GLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYL 342 (371)
Q Consensus 304 Gl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l 342 (371)
.+++.+. ++++++|++++...++..+..+.
T Consensus 295 ------~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L~ 324 (353)
T TIGR02143 295 ------DTCKLVQ---AYERILYISCNPETLKANLEQLS 324 (353)
T ss_pred ------HHHHHHH---cCCcEEEEEcCHHHHHHHHHHHh
Confidence 2333322 36899999998777777777665
No 94
>PLN02476 O-methyltransferase
Probab=99.42 E-value=2.3e-12 Score=122.57 Aligned_cols=121 Identities=14% Similarity=0.256 Sum_probs=100.3
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (371)
Q Consensus 173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~ 252 (371)
.+++..+...+.... ++++|||+|||+|..++.+|..++++++|+++|.++++.+.|++|+++.|+.++++++
T Consensus 103 ~~~~g~lL~~L~~~~-------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li 175 (278)
T PLN02476 103 SPDQAQLLAMLVQIL-------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVK 175 (278)
T ss_pred CHHHHHHHHHHHHhc-------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 466666777666554 4679999999999999999998766789999999999999999999999999999999
Q ss_pred EcCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 253 QGSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 253 ~gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
.||..+.++.. .++||+|+.+.+ -..|..+++.+.++|++||.+++
T Consensus 176 ~GdA~e~L~~l~~~~~~~~FD~VFIDa~-----------------------------K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 176 HGLAAESLKSMIQNGEGSSYDFAFVDAD-----------------------------KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EcCHHHHHHHHHhcccCCCCCEEEECCC-----------------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 99998766432 358999998533 13466788888899999999998
Q ss_pred EE
Q 017476 328 ET 329 (371)
Q Consensus 328 e~ 329 (371)
..
T Consensus 227 DN 228 (278)
T PLN02476 227 DN 228 (278)
T ss_pred ec
Confidence 53
No 95
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.41 E-value=6.7e-12 Score=122.53 Aligned_cols=131 Identities=24% Similarity=0.249 Sum_probs=93.5
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
..+++|||+|||+|.++..++.. ++ ..|+|+|.|+.++..++......+...++.++.+|+.+ ++. .++||+|+|+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~-lp~-~~~FD~V~s~ 196 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ-LPA-LKAFDTVFSM 196 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH-CCC-cCCcCEEEEC
Confidence 45679999999999999999986 23 47999999999987655443333334469999999854 333 5789999993
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---Cc------------------
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---GE------------------ 332 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---~~------------------ 332 (371)
.+..|. .....+++.+.+.|+|||.++++.. +.
T Consensus 197 --------------~vl~H~------------~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~ 250 (322)
T PRK15068 197 --------------GVLYHR------------RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY 250 (322)
T ss_pred --------------Chhhcc------------CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce
Confidence 122221 1234688899999999999998741 10
Q ss_pred --CcHHHHHHHHhccccCCceeEEEEe
Q 017476 333 --KQCKFLKNYLENDSACSFCNVSIVS 357 (371)
Q Consensus 333 --~q~~~v~~~l~~~~~~gf~~v~~~~ 357 (371)
...+.+.+++++ .||..+++..
T Consensus 251 ~lps~~~l~~~L~~---aGF~~i~~~~ 274 (322)
T PRK15068 251 FIPSVPALKNWLER---AGFKDVRIVD 274 (322)
T ss_pred eCCCHHHHHHHHHH---cCCceEEEEe
Confidence 023456777775 7899887763
No 96
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.41 E-value=3.9e-12 Score=125.93 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=101.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsN 273 (371)
.+..+||+|||+|.+++.+|+.. |+..++|+|+++.+++.|.+++..+++.+ +.++++|+...+. ...+.+|.|++|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEEEe
Confidence 35589999999999999999985 88999999999999999999999999876 9999999854221 124789999999
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
.|..+... +| -++ ....+++.+.+.|+|||.+.+-+......+.+.+.+.+
T Consensus 200 FPdPW~Kk---------rH-RRl----------v~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~ 250 (390)
T PRK14121 200 FPVPWDKK---------PH-RRV----------ISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLK 250 (390)
T ss_pred CCCCcccc---------ch-hhc----------cHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHh
Confidence 87543222 12 011 13478999999999999999999766667777777665
No 97
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.41 E-value=7e-13 Score=131.43 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=97.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccC---CCceeEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDV---EGKLSGV 270 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~---~~~fDlI 270 (371)
.+++|||++|-||.+++.+|.. ...+|++||+|..++++|++|++.||++ +++.|+++|.++.+... ..+||+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 4789999999999999999984 3449999999999999999999999985 56899999999987654 3489999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
|.+||=...+.... .++..+|..++..+.+.|+|||.+++..+
T Consensus 295 ilDPPsF~r~k~~~-----------------~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 295 ILDPPSFARSKKQE-----------------FSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred EECCcccccCcccc-----------------hhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 99999553322110 23467889999999999999999999874
No 98
>PRK04266 fibrillarin; Provisional
Probab=99.40 E-value=1.3e-11 Score=114.65 Aligned_cols=143 Identities=16% Similarity=0.122 Sum_probs=97.9
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--ccCCCceeEE
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDVEGKLSGV 270 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--~~~~~~fDlI 270 (371)
..++.+|||+|||+|.++..+++.. +.++|+|+|+++.+++.+.++++.. .++.++.+|..++. ....++||+|
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEE
Confidence 3456799999999999999999986 4679999999999999888887654 34899999986531 1123579999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC----Cc-----CcHHHHHHH
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN----GE-----KQCKFLKNY 341 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~----~~-----~q~~~v~~~ 341 (371)
+++-+. | +....+++.+.+.|||||.+++.+. .. ...+...+.
T Consensus 146 ~~d~~~-----------------p-----------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~ 197 (226)
T PRK04266 146 YQDVAQ-----------------P-----------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRK 197 (226)
T ss_pred EECCCC-----------------h-----------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHH
Confidence 985221 0 1123567889999999999999421 01 111224466
Q ss_pred HhccccCCceeEEEEec--CCCCceEEEEEe
Q 017476 342 LENDSACSFCNVSIVSD--FAGIQRFVTGFR 370 (371)
Q Consensus 342 l~~~~~~gf~~v~~~~D--l~g~~R~~~a~~ 370 (371)
+++ .||+.++...- +....-.+++++
T Consensus 198 l~~---aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 198 LEE---GGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred HHH---cCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 664 78987766542 223355555554
No 99
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.40 E-value=2e-11 Score=111.68 Aligned_cols=142 Identities=20% Similarity=0.201 Sum_probs=107.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~-~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
++.+|||+|||+|.++..+++.. +. .+++++|+++.+++.++++.. ...+++++.+|+.+.. ...++||+|+++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~-~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~-~~~~~~D~i~~~ 113 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA-PDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP-FEDNSFDAVTIA 113 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc-CCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC-CCCCcEEEEEEe
Confidence 56799999999999999999986 43 699999999999999999875 3346899999987643 224689999984
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-Cc--------------------
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GE-------------------- 332 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~-------------------- 332 (371)
--+ .+ +.....+++.+.+.|+|||++++... ..
T Consensus 114 ~~~--------------~~------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (223)
T TIGR01934 114 FGL--------------RN------------VTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSI 167 (223)
T ss_pred eee--------------CC------------cccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhh
Confidence 111 11 12244788999999999999986321 00
Q ss_pred ---------------------CcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476 333 ---------------------KQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 333 ---------------------~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~ 370 (371)
...+.+.+++++ .||..+++.+...|...+++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 168 GGLISKNAEAYTYLPESIRAFPSQEELAAMLKE---AGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHH---cCCccceeeeeecceeeEEEecC
Confidence 022446667765 78999999999999999999875
No 100
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.40 E-value=9.2e-13 Score=106.50 Aligned_cols=99 Identities=28% Similarity=0.400 Sum_probs=74.3
Q ss_pred EEEECCcccHHHHHHHHHh--CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCC
Q 017476 199 WVDLGTGSGAIAIGIARVL--GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (371)
Q Consensus 199 VLDlG~GsG~~al~la~~~--~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPY 276 (371)
|||+|||+|..+..+++.+ ++..+++|+|+|+++++.|+++....+. +++++++|+.+ +....++||+|+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~-l~~~~~~~D~v~~~--- 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARD-LPFSDGKFDLVVCS--- 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTC-HHHHSSSEEEEEE----
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhH-CcccCCCeeEEEEc---
Confidence 7999999999999999876 2347999999999999999999988766 49999999966 44446799999992
Q ss_pred CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc
Q 017476 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG 323 (371)
Q Consensus 277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (371)
...+.+++ -+....+++.+.++|+|||
T Consensus 75 --~~~~~~~~------------------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 75 --GLSLHHLS------------------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --TTGGGGSS------------------HHHHHHHHHHHHHTEEEEE
T ss_pred --CCccCCCC------------------HHHHHHHHHHHHHHhCCCC
Confidence 01111111 2345689999999999998
No 101
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.40 E-value=8.7e-12 Score=120.72 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=83.8
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE-
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS- 272 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs- 272 (371)
.+..+|||+|||+|.+++.+++.+ |+.+++++|+ +.+++.|++|+...++.++++++.+|+++... ..+|+|++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~---~~~D~v~~~ 222 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY---PEADAVLFC 222 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC---CCCCEEEeE
Confidence 345799999999999999999986 8899999998 78999999999999999899999999986321 24698765
Q ss_pred cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
|-. + .+ +-+....+++++.+.|+|||++++.
T Consensus 223 ~~l-------h-------~~-----------~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 223 RIL-------Y-------SA-----------NEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred hhh-------h-------cC-----------ChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 211 0 01 1133457899999999999999775
No 102
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.40 E-value=6.2e-12 Score=110.59 Aligned_cols=158 Identities=24% Similarity=0.299 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHhhhcCCCC-CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476 175 ETELMVDLVSDVLVRDNDGL-RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (371)
Q Consensus 175 ~te~lv~~~~~~~~~~~~~~-~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~ 253 (371)
..+.+++++.+.+. ..... ...+|||||||.|.+...|+++ +-....+|||.|+.|+++|+.-+++.++++.|+|.+
T Consensus 47 ae~riv~wl~d~~~-~~rv~~~A~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q 124 (227)
T KOG1271|consen 47 AEERIVDWLKDLIV-ISRVSKQADRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQ 124 (227)
T ss_pred HHHHHHHHHHhhhh-hhhhcccccceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEE
Confidence 44667788777662 11111 2339999999999999999997 345569999999999999999999999999999999
Q ss_pred cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC
Q 017476 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK 333 (371)
Q Consensus 254 gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~ 333 (371)
.|+.++ ....++||+|.----| +.-.|.++-.. ..+..| +....+.|+|||++++...++
T Consensus 125 ~DI~~~-~~~~~qfdlvlDKGT~----DAisLs~d~~~-----------~r~~~Y---~d~v~~ll~~~gifvItSCN~- 184 (227)
T KOG1271|consen 125 LDITDP-DFLSGQFDLVLDKGTL----DAISLSPDGPV-----------GRLVVY---LDSVEKLLSPGGIFVITSCNF- 184 (227)
T ss_pred eeccCC-cccccceeEEeecCce----eeeecCCCCcc-----------cceeee---hhhHhhccCCCcEEEEEecCc-
Confidence 999986 3335789988741111 00011111101 112233 334457899999999988444
Q ss_pred cHHHHHHHHhccccCCceeEEEEe
Q 017476 334 QCKFLKNYLENDSACSFCNVSIVS 357 (371)
Q Consensus 334 q~~~v~~~l~~~~~~gf~~v~~~~ 357 (371)
..+++.+.+.+ .+|.-...++
T Consensus 185 T~dELv~~f~~---~~f~~~~tvp 205 (227)
T KOG1271|consen 185 TKDELVEEFEN---FNFEYLSTVP 205 (227)
T ss_pred cHHHHHHHHhc---CCeEEEEeec
Confidence 55666776764 5676555544
No 103
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.39 E-value=1.5e-12 Score=102.46 Aligned_cols=95 Identities=24% Similarity=0.289 Sum_probs=73.5
Q ss_pred EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCC
Q 017476 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPS 279 (371)
Q Consensus 200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~ 279 (371)
||+|||+|..+..+++. +..+|+|+|+++++++.++++.... ++.++++|..+. +..++.||+|+++
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~~~~~sfD~v~~~------ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-PFPDNSFDVVFSN------ 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-SS-TT-EEEEEEE------
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-ccccccccccccc------
Confidence 89999999999999996 6789999999999999999987543 366999998654 5446899999994
Q ss_pred CCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 280 DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 280 ~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
.+..| ++....+++++.+.|||||++++
T Consensus 68 --------~~~~~------------~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 --------SVLHH------------LEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --------SHGGG------------SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred --------cceee------------ccCHHHHHHHHHHHcCcCeEEeC
Confidence 11122 13455899999999999999986
No 104
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=4.4e-12 Score=119.54 Aligned_cols=102 Identities=21% Similarity=0.184 Sum_probs=81.6
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
.++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.+++.|+++. .++.++.+|..+... .++||+|++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--~~~fD~v~~~ 100 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--PQALDLIFAN 100 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--CCCccEEEEc
Confidence 346799999999999999999885 7789999999999999999874 248899999865432 3589999998
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
..+.... ....+++.+.+.|+|||.+++.+.
T Consensus 101 ~~l~~~~--------------------------d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 101 ASLQWLP--------------------------DHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred cChhhCC--------------------------CHHHHHHHHHHhcCCCcEEEEECC
Confidence 6542211 123678888999999999999763
No 105
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.39 E-value=1.5e-11 Score=119.37 Aligned_cols=133 Identities=22% Similarity=0.171 Sum_probs=92.6
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
...++++|||+|||+|.++..++.. + ...|+|+|.|+.++..++...+..+...++.+..+++.+ ++. ...||+|+
T Consensus 118 ~~~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~-lp~-~~~FD~V~ 193 (314)
T TIGR00452 118 SPLKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ-LHE-LYAFDTVF 193 (314)
T ss_pred CCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH-CCC-CCCcCEEE
Confidence 3456789999999999999998875 2 347999999999988765433333333468888888744 332 25899999
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---CcC---------------
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---GEK--------------- 333 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---~~~--------------- 333 (371)
|+ .+..|-+ ....+++++++.|+|||.++++.. +..
T Consensus 194 s~--------------gvL~H~~------------dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~n 247 (314)
T TIGR00452 194 SM--------------GVLYHRK------------SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKN 247 (314)
T ss_pred Ec--------------chhhccC------------CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccc
Confidence 94 2222321 133678889999999999998741 100
Q ss_pred -----cHHHHHHHHhccccCCceeEEEEe
Q 017476 334 -----QCKFLKNYLENDSACSFCNVSIVS 357 (371)
Q Consensus 334 -----q~~~v~~~l~~~~~~gf~~v~~~~ 357 (371)
....+..++++ .||..|++..
T Consensus 248 v~flpS~~~L~~~L~~---aGF~~V~i~~ 273 (314)
T TIGR00452 248 VYFIPSVSALKNWLEK---VGFENFRILD 273 (314)
T ss_pred cccCCCHHHHHHHHHH---CCCeEEEEEe
Confidence 23456677775 7899998764
No 106
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.39 E-value=2e-11 Score=115.84 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=81.3
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
.++.+|||+|||+|..+..+++.+ +.+|+|+|+|+.+++.|+++... .+++.+..+|+.+. +...++||+|+++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~~~~~~FD~V~s~ 124 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-DFPENTFDMIYSR 124 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-CCCCCCeEEEEEh
Confidence 356799999999999999998763 57999999999999999988653 34699999998652 2224789999994
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.-. .|.+ .+....+++.+.++|||||++++..
T Consensus 125 ~~l--------------~h~~----------~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 125 DAI--------------LHLS----------YADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred hhH--------------HhCC----------HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 221 1111 1234478899999999999999864
No 107
>PRK08317 hypothetical protein; Provisional
Probab=99.38 E-value=3.3e-11 Score=110.94 Aligned_cols=123 Identities=24% Similarity=0.288 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (371)
Q Consensus 174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~ 253 (371)
|..+.+.+.+.+.+ ...++.+|||+|||+|.++..+++.+++..+++|+|+++.+++.|+++.. ....++++..
T Consensus 2 ~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~ 75 (241)
T PRK08317 2 PDFRRYRARTFELL----AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVR 75 (241)
T ss_pred chHHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEe
Confidence 34455666666555 33456799999999999999999976567899999999999999999833 2334699999
Q ss_pred cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 254 GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 254 gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+|..+. +...++||+|+++--+ .|- .....+++.+.+.|+|||.++++.
T Consensus 76 ~d~~~~-~~~~~~~D~v~~~~~~--------------~~~------------~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 76 GDADGL-PFPDGSFDAVRSDRVL--------------QHL------------EDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred cccccC-CCCCCCceEEEEechh--------------hcc------------CCHHHHHHHHHHHhcCCcEEEEEe
Confidence 998642 2224789999985221 111 113367888899999999998865
No 108
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.38 E-value=8.2e-12 Score=117.32 Aligned_cols=111 Identities=20% Similarity=0.118 Sum_probs=82.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
.+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ...++++|+.+ ++..+++||+|++|.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~-~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIES-LPLATATFDLAWSNL 111 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCccc-CcCCCCcEEEEEECc
Confidence 4568999999999999888763 5799999999999999988742 24678899855 333346899999986
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHH
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNY 341 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~ 341 (371)
++.... ....++.++.+.|+|||.+++...+.....++.+.
T Consensus 112 ~l~~~~--------------------------d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~ 152 (251)
T PRK10258 112 AVQWCG--------------------------NLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQA 152 (251)
T ss_pred hhhhcC--------------------------CHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHH
Confidence 543211 13367888999999999999987554444444433
No 109
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.37 E-value=1.4e-11 Score=114.98 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=84.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
++.+|||+|||+|..+..+++.+ .++.+++|+|+|+.+++.|++++...+...+++++++|+.+.. . ..+|+|+++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--~~~d~v~~~ 129 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-I--KNASMVILN 129 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-C--CCCCEEeee
Confidence 45689999999999999999864 2678999999999999999999988776667999999997532 2 368999885
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
-.. +.+. .+....+++.+.+.|+|||.+++..
T Consensus 130 ~~l------~~~~------------------~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 130 FTL------QFLP------------------PEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred cch------hhCC------------------HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 321 1111 1223478899999999999999864
No 110
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.37 E-value=2.5e-12 Score=117.56 Aligned_cols=120 Identities=26% Similarity=0.437 Sum_probs=95.7
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (371)
Q Consensus 174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~ 253 (371)
+++..++..+.... ++++|||+||++|.-++.+|+.++++++|+.+|++++..+.|++|+++.|+.++|+++.
T Consensus 31 ~~~g~lL~~l~~~~-------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~ 103 (205)
T PF01596_consen 31 PETGQLLQMLVRLT-------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE 103 (205)
T ss_dssp HHHHHHHHHHHHHH-------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE
T ss_pred HHHHHHHHHHHHhc-------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 45556666666554 46799999999999999999988668999999999999999999999999999999999
Q ss_pred cCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 254 gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
||+.+.++.+ .++||+|+.+- . -..|...++.+.++|++||.+++.
T Consensus 104 gda~~~l~~l~~~~~~~~fD~VFiDa------------------~-----------K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 104 GDALEVLPELANDGEEGQFDFVFIDA------------------D-----------KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp S-HHHHHHHHHHTTTTTSEEEEEEES------------------T-----------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred eccHhhHHHHHhccCCCceeEEEEcc------------------c-----------ccchhhHHHHHhhhccCCeEEEEc
Confidence 9998765432 25899999831 0 123456677777899999999996
Q ss_pred E
Q 017476 329 T 329 (371)
Q Consensus 329 ~ 329 (371)
-
T Consensus 155 N 155 (205)
T PF01596_consen 155 N 155 (205)
T ss_dssp T
T ss_pred c
Confidence 4
No 111
>PLN03075 nicotianamine synthase; Provisional
Probab=99.37 E-value=2e-11 Score=116.82 Aligned_cols=145 Identities=13% Similarity=0.141 Sum_probs=100.8
Q ss_pred CCCeEEEECCcccHH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 195 RDGFWVDLGTGSGAI-AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~-al~la~~~~~~~~V~gvDis~~al~~A~~n~~~-~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
.+++|+|+|||.|.+ ++.++....++++++|+|+|+++++.|++++.. .++.++++|..+|+.+.... .++||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~-l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES-LKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc-cCCcCEEEE
Confidence 578999999997743 444443334889999999999999999999965 78888999999999875332 368999999
Q ss_pred cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc----cccC
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN----DSAC 348 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~----~~~~ 348 (371)
+ --+ ++.. .....+++.+.+.|+|||.+++-. +.. .+++|-- ..-.
T Consensus 202 ~-ALi------~~dk------------------~~k~~vL~~l~~~LkPGG~Lvlr~-~~G----~r~~LYp~v~~~~~~ 251 (296)
T PLN03075 202 A-ALV------GMDK------------------EEKVKVIEHLGKHMAPGALLMLRS-AHG----ARAFLYPVVDPCDLR 251 (296)
T ss_pred e-ccc------cccc------------------ccHHHHHHHHHHhcCCCcEEEEec-ccc----hHhhcCCCCChhhCC
Confidence 4 111 0000 234578899999999999999987 222 2222211 1124
Q ss_pred CceeEEEEecCCC-CceEEEEEe
Q 017476 349 SFCNVSIVSDFAG-IQRFVTGFR 370 (371)
Q Consensus 349 gf~~v~~~~Dl~g-~~R~~~a~~ 370 (371)
||+...++..... +--+++++|
T Consensus 252 gf~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 252 GFEVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred CeEEEEEECCCCCceeeEEEEEe
Confidence 7877666554444 445666666
No 112
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.37 E-value=1.2e-11 Score=128.27 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=109.9
Q ss_pred CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHH
Q 017476 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-------KGSIIAVDLNPLAAAVAAFNA 240 (371)
Q Consensus 168 ~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~-------~~~V~gvDis~~al~~A~~n~ 240 (371)
.++.|...++.+++.+.... .........+|||+|||+|.+.+.++..+.. ...++|+|+++.++..|+.|+
T Consensus 5 qfyTP~~ia~~mv~~~~~~~-~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEI-GKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhc-chhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 35678888999998876543 1111113568999999999999999887521 257999999999999999999
Q ss_pred HHcCCCCcEEEEEcCccccc----ccCCCceeEEEEcCCCCCCCCcc-cch---hh---------------hcccCcccc
Q 017476 241 QRYGLQDIIEIRQGSWFGKL----KDVEGKLSGVVSNPPYIPSDDIS-GLQ---VE---------------VGKHEPRLA 297 (371)
Q Consensus 241 ~~~gl~~~v~~~~gD~~~~l----~~~~~~fDlIvsNPPYi~~~~~~-~l~---~e---------------v~~~ep~~a 297 (371)
...+. ..+.+..+|..... ....++||+||+||||....... ... .. ..+.-+...
T Consensus 84 ~~~~~-~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (524)
T TIGR02987 84 GEFAL-LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSD 162 (524)
T ss_pred hhcCC-CCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhh
Confidence 87762 22566666654321 11135899999999998643211 100 00 000000000
Q ss_pred ccCCCCc-HHHHHH-HHHHHhcccccCcEEEEEECC----cCcHHHHHHHHhc
Q 017476 298 LDGGVDG-LDYLLH-LCNGTASMLKPGGFFAFETNG----EKQCKFLKNYLEN 344 (371)
Q Consensus 298 L~gg~dG-l~~~~~-il~~a~~~LkpgG~lvle~~~----~~q~~~v~~~l~~ 344 (371)
-.....| -..|.. +++.+.+.|++||++.+.++. ....+.+++.+.+
T Consensus 163 ~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~ 215 (524)
T TIGR02987 163 PIRKYAGVGTEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFN 215 (524)
T ss_pred hhcccCCcccHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHh
Confidence 0000012 124444 457789999999999998852 3456678776654
No 113
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.37 E-value=9.3e-12 Score=112.30 Aligned_cols=105 Identities=28% Similarity=0.267 Sum_probs=79.5
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
.+++++||+|||.|..++.||+. +..|+|+|+|+.+++.+++.++..+++ |+....|+.+... .+.||+|++-
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~--~~~yD~I~st 101 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF--PEEYDFIVST 101 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS---TTTEEEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc--cCCcCEEEEE
Confidence 35779999999999999999994 689999999999999999998888886 9999999866432 4689999972
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
..+..++++. ...+++...+.++|||+++++.
T Consensus 102 ------~v~~fL~~~~------------------~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 102 ------VVFMFLQREL------------------RPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ------SSGGGS-GGG------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred ------EEeccCCHHH------------------HHHHHHHHHhhcCCcEEEEEEE
Confidence 1122222222 3478899999999999998864
No 114
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.36 E-value=3.4e-11 Score=107.99 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=96.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
-.++||+|||.|.++..||.+. .+++++|+|+.|++.|++.+.. .+ +|+++++|+-+..+ .++||+||.
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~-~V~~~~~dvp~~~P--~~~FDLIV~--- 112 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LP-HVEWIQADVPEFWP--EGRFDLIVL--- 112 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TTT-----SS-EEEEEE---
T ss_pred cceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CC-CeEEEECcCCCCCC--CCCeeEEEE---
Confidence 3589999999999999999974 6899999999999999998764 33 59999999977654 489999998
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---------CcCcHHHHHHHHhccc
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---------GEKQCKFLKNYLENDS 346 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---------~~~q~~~v~~~l~~~~ 346 (371)
.||..|-. ..+.++.++..+...|+|||.+++-+. ..-.++.|.++|.+
T Consensus 113 -----------SEVlYYL~---------~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~-- 170 (201)
T PF05401_consen 113 -----------SEVLYYLD---------DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQE-- 170 (201)
T ss_dssp -----------ES-GGGSS---------SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHH--
T ss_pred -----------ehHhHcCC---------CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHH--
Confidence 45655531 245677888999999999999999873 22346778888885
Q ss_pred cCCceeEEEEe--cCCCCceEEEEE
Q 017476 347 ACSFCNVSIVS--DFAGIQRFVTGF 369 (371)
Q Consensus 347 ~~gf~~v~~~~--Dl~g~~R~~~a~ 369 (371)
.+.+|+-+. .-.-.+-+++++
T Consensus 171 --~~~~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 171 --HLTEVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp --HSEEEEEEEEE-SSTTSEEEEEE
T ss_pred --HhhheeEEEEcCCCCCCceEeee
Confidence 366665433 333345555554
No 115
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.36 E-value=6.6e-12 Score=111.19 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=64.4
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+++|+.. .++++++++|+.+.... ...||.|++|
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-~~~~d~vi~n 84 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-KLQPYKVVGN 84 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-ccCCCEEEEC
Confidence 34569999999999999999985 46999999999999999999854 23699999999775322 2469999999
Q ss_pred CCCC
Q 017476 274 PPYI 277 (371)
Q Consensus 274 PPYi 277 (371)
|||.
T Consensus 85 ~Py~ 88 (169)
T smart00650 85 LPYN 88 (169)
T ss_pred CCcc
Confidence 9995
No 116
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.36 E-value=8.3e-12 Score=114.58 Aligned_cols=120 Identities=22% Similarity=0.331 Sum_probs=101.1
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (371)
Q Consensus 174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~ 253 (371)
|++-.+...++... .+++|||+||+.|.-++.+|..++.+++++.+|++++..+.|++|+++.|+.++|.++.
T Consensus 45 ~e~g~~L~~L~~~~-------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 45 PETGALLRLLARLS-------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred hhHHHHHHHHHHhc-------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe
Confidence 77777777776554 46799999999999999999998548899999999999999999999999999999999
Q ss_pred -cCccccccc-CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 254 -GSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 254 -gD~~~~l~~-~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+|+.+.+.. ..+.||+|+.+ + .-..|..+++.+.+.|+|||.+++.-
T Consensus 118 ~gdal~~l~~~~~~~fDliFID------------------a-----------dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 118 GGDALDVLSRLLDGSFDLVFID------------------A-----------DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred cCcHHHHHHhccCCCccEEEEe------------------C-----------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 598887664 46899999972 1 12446688889999999999999853
No 117
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.5e-11 Score=123.92 Aligned_cols=147 Identities=19% Similarity=0.182 Sum_probs=117.1
Q ss_pred ceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 160 DLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 160 ~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
+..|.++++.|+. ...++.|++++.+++ +..++.+++|+.||.|.+++.+|+. ..+|+|||+++++++.|+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~----~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~ 332 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWL----ELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQ 332 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHH----hhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHH
Confidence 4678888888884 367899999999998 2334569999999999999999975 479999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcCcccccccCC--CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476 238 FNAQRYGLQDIIEIRQGSWFGKLKDVE--GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315 (371)
Q Consensus 238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~--~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a 315 (371)
+|++.|++.| ++|..+|..+...... ..+|.||.|||=-. ++ +.+++.+
T Consensus 333 ~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G--------------------------~~--~~~lk~l 383 (432)
T COG2265 333 ENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAG--------------------------AD--REVLKQL 383 (432)
T ss_pred HHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCCCCC--------------------------CC--HHHHHHH
Confidence 9999999988 9999999877655432 47899999999321 11 0233222
Q ss_pred hcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476 316 ASMLKPGGFFAFETNGEKQCKFLKNYLE 343 (371)
Q Consensus 316 ~~~LkpgG~lvle~~~~~q~~~v~~~l~ 343 (371)
..++|..++++.++....+..+..+..
T Consensus 384 -~~~~p~~IvYVSCNP~TlaRDl~~L~~ 410 (432)
T COG2265 384 -AKLKPKRIVYVSCNPATLARDLAILAS 410 (432)
T ss_pred -HhcCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 356888999999988777777777765
No 118
>PRK00811 spermidine synthase; Provisional
Probab=99.35 E-value=1.9e-11 Score=117.25 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=104.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEcCcccccccCCCceeEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L--QDIIEIRQGSWFGKLKDVEGKLSGV 270 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--l--~~~v~~~~gD~~~~l~~~~~~fDlI 270 (371)
.+++||++|||+|.++..+++. .+..+|++||+++++++.|++++...+ . .++++++.+|..+.+....++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4679999999999999999885 245699999999999999999986532 2 4579999999987665445789999
Q ss_pred EEcC--CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhcccc
Q 017476 271 VSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSA 347 (371)
Q Consensus 271 vsNP--PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~ 347 (371)
++|. |+.+... + ....+++.+.+.|+|||++++.... ..+.+.+..+.+.. .
T Consensus 155 i~D~~dp~~~~~~-----------------------l-~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl-~ 209 (283)
T PRK00811 155 IVDSTDPVGPAEG-----------------------L-FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKL-K 209 (283)
T ss_pred EECCCCCCCchhh-----------------------h-hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHH-H
Confidence 9973 4321100 0 1247788889999999999997632 22344444444432 1
Q ss_pred CCceeEEEEec----C-CCCceEEEEEe
Q 017476 348 CSFCNVSIVSD----F-AGIQRFVTGFR 370 (371)
Q Consensus 348 ~gf~~v~~~~D----l-~g~~R~~~a~~ 370 (371)
.-|..+..+.. + .|..-|++|.+
T Consensus 210 ~~F~~v~~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 210 EVFPIVRPYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred HHCCCEEEEEeECCcccCchheeEEeec
Confidence 33767666553 2 45555666643
No 119
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.34 E-value=1.7e-11 Score=118.59 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=103.4
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCceeEEEE
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~fDlIvs 272 (371)
.++..|||..||||.+++.+... +++++|.|++..|+.-|+.|++.+++++ ..++.+ |+.. ++..+..+|.|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~-lpl~~~~vdaIat 270 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN-LPLRDNSVDAIAT 270 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc-CCCCCCccceEEe
Confidence 45679999999999999999873 7899999999999999999999999876 656666 8855 3322345999999
Q ss_pred cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN 352 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~ 352 (371)
+|||..+....... =.+.|..+++.+.+.|++||++++-.+ ... .... . ..+|.-
T Consensus 271 DPPYGrst~~~~~~-----------------l~~Ly~~~le~~~evLk~gG~~vf~~p-~~~---~~~~-~---~~~f~v 325 (347)
T COG1041 271 DPPYGRSTKIKGEG-----------------LDELYEEALESASEVLKPGGRIVFAAP-RDP---RHEL-E---ELGFKV 325 (347)
T ss_pred cCCCCccccccccc-----------------HHHHHHHHHHHHHHHhhcCcEEEEecC-Ccc---hhhH-h---hcCceE
Confidence 99998654322110 135688999999999999999999984 111 1222 2 256877
Q ss_pred EEEEecCC
Q 017476 353 VSIVSDFA 360 (371)
Q Consensus 353 v~~~~Dl~ 360 (371)
++.+..+.
T Consensus 326 ~~~~~~~~ 333 (347)
T COG1041 326 LGRFTMRV 333 (347)
T ss_pred EEEEEEee
Confidence 77776653
No 120
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.34 E-value=1.3e-11 Score=113.18 Aligned_cols=134 Identities=25% Similarity=0.334 Sum_probs=96.3
Q ss_pred ccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476 156 EHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (371)
Q Consensus 156 ~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~ 235 (371)
..|.+..+.++.+..+..| .++..+++.+ +..++.+|||+|||||..+..++...++...|++||+++..++.
T Consensus 40 ~aY~d~~l~i~~~~~is~P---~~~a~~l~~L----~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~ 112 (209)
T PF01135_consen 40 LAYEDRPLPIGCGQTISAP---SMVARMLEAL----DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER 112 (209)
T ss_dssp GTTSSS-EEEETTEEE--H---HHHHHHHHHT----TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH
T ss_pred CCCCCCCeeecceeechHH---HHHHHHHHHH----hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH
Confidence 3455677777777666554 3455555555 34467899999999999999999988777789999999999999
Q ss_pred HHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHH
Q 017476 236 AAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGT 315 (371)
Q Consensus 236 A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a 315 (371)
|++|+...+..+ +.++.+|....++. .+.||.|+++.-.- .. ...+
T Consensus 113 A~~~l~~~~~~n-v~~~~gdg~~g~~~-~apfD~I~v~~a~~--------------~i--------------p~~l---- 158 (209)
T PF01135_consen 113 ARRNLARLGIDN-VEVVVGDGSEGWPE-EAPFDRIIVTAAVP--------------EI--------------PEAL---- 158 (209)
T ss_dssp HHHHHHHHTTHS-EEEEES-GGGTTGG-G-SEEEEEESSBBS--------------S----------------HHH----
T ss_pred HHHHHHHhccCc-eeEEEcchhhcccc-CCCcCEEEEeeccc--------------hH--------------HHHH----
Confidence 999999999874 99999998776654 46899999953210 00 1133
Q ss_pred hcccccCcEEEEEEC
Q 017476 316 ASMLKPGGFFAFETN 330 (371)
Q Consensus 316 ~~~LkpgG~lvle~~ 330 (371)
.+.|++||++++-+.
T Consensus 159 ~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 159 LEQLKPGGRLVAPIG 173 (209)
T ss_dssp HHTEEEEEEEEEEES
T ss_pred HHhcCCCcEEEEEEc
Confidence 367999999999884
No 121
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.34 E-value=8.6e-12 Score=114.08 Aligned_cols=110 Identities=22% Similarity=0.229 Sum_probs=80.2
Q ss_pred EeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhc-CCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCH
Q 017476 152 LVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRD-NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (371)
Q Consensus 152 i~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~-~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~ 230 (371)
+++...||+-+| ...+++|..++.++...++.+... ....++.+|||+|||+|.++..+++.+ ++.+++|+|+|+
T Consensus 2 ~~~~~~fw~~~~---g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~ 77 (204)
T TIGR03587 2 KTEQEQFWAGEF---GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINE 77 (204)
T ss_pred cchHHHHhcCcc---cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCH
Confidence 556667777666 223788877776555444433110 012245689999999999999999875 678999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 231 LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 231 ~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
++++.|+++. + ++.+.++|+.++.. .++||+|++|
T Consensus 78 ~~l~~A~~~~-----~-~~~~~~~d~~~~~~--~~sfD~V~~~ 112 (204)
T TIGR03587 78 YAVEKAKAYL-----P-NINIIQGSLFDPFK--DNFFDLVLTK 112 (204)
T ss_pred HHHHHHHhhC-----C-CCcEEEeeccCCCC--CCCEEEEEEC
Confidence 9999999874 1 37788999877433 4789999995
No 122
>PRK06922 hypothetical protein; Provisional
Probab=99.33 E-value=2.1e-11 Score=126.84 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=89.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsN 273 (371)
++.+|||+|||+|..+..+++.+ ++.+|+|+|+|+.|++.|+++....+. +++++++|..+... ...++||+|++|
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCCEEEEEEc
Confidence 46799999999999999999875 889999999999999999998766553 48899999865211 124689999999
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+++..-. .|.| ..++..+.+....+++.+.+.|||||.+++..
T Consensus 495 ~vLH~L~----------syIp---~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 495 SILHELF----------SYIE---YEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred hHHHhhh----------hhcc---cccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 8763110 0111 01111234567789999999999999999975
No 123
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.33 E-value=2.4e-11 Score=111.41 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=80.5
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
.++.+|||+|||+|.++..+++.. .+|+++|+++++++.|++|++++++.+ ++++.+|..+.+.. .++||+|+++
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~-~~~fD~I~~~ 151 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPA-YAPFDRILVT 151 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCc-CCCcCEEEEc
Confidence 356799999999999999888763 489999999999999999999998865 99999998765443 3689999996
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
.+.. .+.+...+.|+|||.+++..+
T Consensus 152 ~~~~--------------------------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 152 AAAP--------------------------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCch--------------------------------hhhHHHHHhcCCCcEEEEEEc
Confidence 4321 122344578999999999884
No 124
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.32 E-value=3.8e-11 Score=110.81 Aligned_cols=109 Identities=22% Similarity=0.294 Sum_probs=85.6
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCC-----cEEEEEeCCHHHHHHHHHHHHHcCCCCc--EEEEEcCcccccccCC
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSK-----GSIIAVDLNPLAAAVAAFNAQRYGLQDI--IEIRQGSWFGKLKDVE 264 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~-----~~V~gvDis~~al~~A~~n~~~~gl~~~--v~~~~gD~~~~l~~~~ 264 (371)
....+.++||++||||-++..+.+..... .+|+..|+|+++|+++++.+.+.++... +.++++|+.+ ++..+
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~-LpFdd 175 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED-LPFDD 175 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc-CCCCC
Confidence 34456899999999999999999886322 7999999999999999999988777654 9999999954 55556
Q ss_pred CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
..||..++- -.. +. ..++.+.+++|+++|||||++.+
T Consensus 176 ~s~D~yTia-------------fGI-RN------------~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 176 DSFDAYTIA-------------FGI-RN------------VTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred CcceeEEEe-------------cce-ec------------CCCHHHHHHHHHHhcCCCcEEEE
Confidence 789987761 011 11 12355889999999999998865
No 125
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.32 E-value=7.5e-12 Score=112.91 Aligned_cols=106 Identities=24% Similarity=0.214 Sum_probs=84.2
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
....+|.|||||+|..+..+++++ |.+.|+|+|-|++|++.|++. ++ +++|.++|+.+.-+. ..+|++++|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp-~~~f~~aDl~~w~p~--~~~dllfaN 99 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LP-DATFEEADLRTWKPE--QPTDLLFAN 99 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CC-CCceecccHhhcCCC--Cccchhhhh
Confidence 346799999999999999999998 999999999999999999765 23 389999998765443 689999998
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCc
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQ 334 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q 334 (371)
--+ .|-|. ..+++......|.|||+|.+.++++..
T Consensus 100 Avl--------------qWlpd------------H~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 100 AVL--------------QWLPD------------HPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhh--------------hhccc------------cHHHHHHHHHhhCCCceEEEECCCccC
Confidence 443 23222 125666677899999999999975543
No 126
>PRK03612 spermidine synthase; Provisional
Probab=99.30 E-value=5.2e-11 Score=123.40 Aligned_cols=138 Identities=15% Similarity=0.180 Sum_probs=94.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----CC-CCcEEEEEcCcccccccCCCcee
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-----GL-QDIIEIRQGSWFGKLKDVEGKLS 268 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-----gl-~~~v~~~~gD~~~~l~~~~~~fD 268 (371)
++++|||+|||+|..+..+++. ++..+|++||+|+++++.|++|.... .+ .++++++.+|..+.+....++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4679999999999999999874 23379999999999999999963211 22 24799999999876655457899
Q ss_pred EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhcccc
Q 017476 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSA 347 (371)
Q Consensus 269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~ 347 (371)
+|++|+|......... -..+++++.+.+.|+|||.+++.... ....+.+.++.+...+
T Consensus 376 vIi~D~~~~~~~~~~~---------------------L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~ 434 (521)
T PRK03612 376 VIIVDLPDPSNPALGK---------------------LYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA 434 (521)
T ss_pred EEEEeCCCCCCcchhc---------------------cchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 9999987532111000 11246788889999999999997632 1223333333333223
Q ss_pred CCceeEEE
Q 017476 348 CSFCNVSI 355 (371)
Q Consensus 348 ~gf~~v~~ 355 (371)
.|| .+..
T Consensus 435 ~gf-~v~~ 441 (521)
T PRK03612 435 AGL-ATTP 441 (521)
T ss_pred cCC-EEEE
Confidence 668 4433
No 127
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.30 E-value=7.3e-13 Score=106.45 Aligned_cols=98 Identities=21% Similarity=0.305 Sum_probs=62.3
Q ss_pred EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCCCC
Q 017476 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIP 278 (371)
Q Consensus 200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~ 278 (371)
||+|||+|.++..++..+ +..+++|+|+|+.+++.|++++...+... ......+..+..... .++||+|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~----- 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVAS----- 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-----
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhh-----
Confidence 799999999999999986 88999999999999999999988876543 333333333322211 2589999994
Q ss_pred CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEE
Q 017476 279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFF 325 (371)
Q Consensus 279 ~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~l 325 (371)
.+..| ++..+.+++.+.++|+|||+|
T Consensus 74 ---------~vl~~------------l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 ---------NVLHH------------LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----------TTS--------------S-HHHHHHHHTTT-TSS-EE
T ss_pred ---------hhHhh------------hhhHHHHHHHHHHHcCCCCCC
Confidence 22233 234558999999999999986
No 128
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.8e-11 Score=122.70 Aligned_cols=163 Identities=20% Similarity=0.290 Sum_probs=120.7
Q ss_pred CCceeeEeec----ccccceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC
Q 017476 146 RKPFQYLVGC----EHWRDLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS 219 (371)
Q Consensus 146 ~~P~~yi~g~----~~f~~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~ 219 (371)
+.|++++-|. ..+.++.|.++|+.|+. ....|.+...+-++. ....++.++|++||||.+++++|+..
T Consensus 332 ~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~~~-- 405 (534)
T KOG2187|consen 332 GKPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALARGV-- 405 (534)
T ss_pred CCCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHh----CCCCCcEEEEEeecCCceehhhhccc--
Confidence 4788888775 45678999999999996 477889999998887 33345789999999999999999964
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC----Ccee-EEEEcCCCCCCCCcccchhhhcccCc
Q 017476 220 KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE----GKLS-GVVSNPPYIPSDDISGLQVEVGKHEP 294 (371)
Q Consensus 220 ~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~----~~fD-lIvsNPPYi~~~~~~~l~~ev~~~ep 294 (371)
.+|+|||+++++++.|++|++.||+++ .+|++|-..+..+.+. +.-+ ++|.|||=.
T Consensus 406 -~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~----------------- 466 (534)
T KOG2187|consen 406 -KRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRK----------------- 466 (534)
T ss_pred -cceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhcccCCCCCceEEEECCCcc-----------------
Confidence 799999999999999999999999986 9999995544333221 2334 788888842
Q ss_pred cccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 295 RLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 295 ~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
|++. .+++....+-++-=.+++.++...++..+..++..
T Consensus 467 ---------Glh~--~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~ 505 (534)
T KOG2187|consen 467 ---------GLHM--KVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSS 505 (534)
T ss_pred ---------cccH--HHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcC
Confidence 1111 34444444444666777777655556666666653
No 129
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.29 E-value=3.1e-11 Score=111.16 Aligned_cols=108 Identities=16% Similarity=0.076 Sum_probs=76.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-----------CCCCcEEEEEcCcccccccC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-----------GLQDIIEIRQGSWFGKLKDV 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-----------gl~~~v~~~~gD~~~~l~~~ 263 (371)
++.+|||+|||.|..++.+|++ +.+|+|||+|+.|++.+.+..... .-..+++++++|+++.....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4569999999999999999984 689999999999999864321100 00235899999998754332
Q ss_pred CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.++||.|+-.- .+.++++ +.-..+++.+.+.|+|||++++++
T Consensus 111 ~~~fD~i~D~~------~~~~l~~------------------~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 111 LGPVDAVYDRA------ALIALPE------------------EMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CCCcCEEEech------hhccCCH------------------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 36789888521 1112222 223368888899999999877764
No 130
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.29 E-value=1.1e-10 Score=113.50 Aligned_cols=107 Identities=21% Similarity=0.126 Sum_probs=82.7
Q ss_pred cceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 159 RDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 159 ~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
++....++...+.+++.++.+++.+++++ ......++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++
T Consensus 109 y~~~d~v~~~~l~~~~~~~~~v~~~l~~l-~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~ 184 (315)
T PLN02585 109 YGETDEVNKVQLDIRLGHAQTVEKVLLWL-AEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAER 184 (315)
T ss_pred cCCccccCceeeecccChHHHHHHHHHHH-HhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHH
Confidence 45555666667788888888888888877 3211234679999999999999999984 4799999999999999999
Q ss_pred HHHHcCC----CCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 239 NAQRYGL----QDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 239 n~~~~gl----~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
|+...+. ..++++..+|+.+ + .++||+|+|+
T Consensus 185 ~~~~~~~~~~~~~~~~f~~~Dl~~-l---~~~fD~Vv~~ 219 (315)
T PLN02585 185 RAKEALAALPPEVLPKFEANDLES-L---SGKYDTVTCL 219 (315)
T ss_pred HHHhcccccccccceEEEEcchhh-c---CCCcCEEEEc
Confidence 9876522 1348899999743 2 3689999984
No 131
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.28 E-value=7.5e-11 Score=108.78 Aligned_cols=106 Identities=24% Similarity=0.289 Sum_probs=82.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
.+.+|||+|||+|.++..+++.. +..+++++|+++.+++.++++.. .++.++.+|+.+.. ...++||+|++|-
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~-~~~~~fD~vi~~~ 106 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP-LEDSSFDLIVSNL 106 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC-CCCCceeEEEEhh
Confidence 45689999999999999999975 77889999999999999887653 25889999986532 2346899999963
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK 333 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~ 333 (371)
.. .| ......+++.+.+.|+|||++++...+..
T Consensus 107 ~l--------------~~------------~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 107 AL--------------QW------------CDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred hh--------------hh------------ccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 22 11 11234788899999999999999774433
No 132
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.28 E-value=7.2e-12 Score=116.14 Aligned_cols=101 Identities=24% Similarity=0.309 Sum_probs=80.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEcCcccccccCCCceeEE
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-----IIEIRQGSWFGKLKDVEGKLSGV 270 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~-----~v~~~~gD~~~~l~~~~~~fDlI 270 (371)
+.+|||+|||+|.++..||+. +++|+|+|+++++++.|++.....-..+ ++++...|..+ ..++||.|
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~----~~~~fDaV 162 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG----LTGKFDAV 162 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh----ccccccee
Confidence 567999999999999999995 5899999999999999999854432222 35666666533 23579999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+| .||..| .++...+++.+.+.|||||.+++.+
T Consensus 163 vc--------------sevleH------------V~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 163 VC--------------SEVLEH------------VKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred ee--------------HHHHHH------------HhCHHHHHHHHHHHhCCCCceEeee
Confidence 99 566555 4556789999999999999999965
No 133
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.28 E-value=1.8e-10 Score=106.09 Aligned_cols=88 Identities=24% Similarity=0.285 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (371)
Q Consensus 176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD 255 (371)
.+.+.+.+++++ .. ...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++++...+..+++.+..+|
T Consensus 38 ~~~~~~~~~~~l-~~-~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d 112 (219)
T TIGR02021 38 RAAMRRKLLDWL-PK-DPLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND 112 (219)
T ss_pred HHHHHHHHHHHH-hc-CCCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 345555666665 21 1235679999999999999999874 469999999999999999999888776679999999
Q ss_pred cccccccCCCceeEEEE
Q 017476 256 WFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 256 ~~~~l~~~~~~fDlIvs 272 (371)
+.+.. ++||+|++
T Consensus 113 ~~~~~----~~fD~ii~ 125 (219)
T TIGR02021 113 LLSLC----GEFDIVVC 125 (219)
T ss_pred hhhCC----CCcCEEEE
Confidence 86532 68999998
No 134
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.6e-11 Score=107.85 Aligned_cols=129 Identities=24% Similarity=0.366 Sum_probs=97.0
Q ss_pred ccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 158 WRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 158 f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
|-+..+-+..+..|-.|. ++-.+++.+ ...++.+|||+|||||..+..+|+.. .+|+.+|..++..+.|+
T Consensus 42 Y~d~~lpi~~gqtis~P~---~vA~m~~~L----~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~ 111 (209)
T COG2518 42 YEDRALPIGCGQTISAPH---MVARMLQLL----ELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQAR 111 (209)
T ss_pred ccCCcccCCCCceecCcH---HHHHHHHHh----CCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHH
Confidence 345555666777775553 334444444 34467899999999999999999974 49999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (371)
Q Consensus 238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~ 317 (371)
+|++..|+.| |.++++|....++. ...||.|+.+- .. ..-| +.++ +
T Consensus 112 ~~L~~lg~~n-V~v~~gDG~~G~~~-~aPyD~I~Vta------aa--------~~vP--------------~~Ll----~ 157 (209)
T COG2518 112 RNLETLGYEN-VTVRHGDGSKGWPE-EAPYDRIIVTA------AA--------PEVP--------------EALL----D 157 (209)
T ss_pred HHHHHcCCCc-eEEEECCcccCCCC-CCCcCEEEEee------cc--------CCCC--------------HHHH----H
Confidence 9999999987 99999999876654 47899999831 00 0001 1333 6
Q ss_pred ccccCcEEEEEEC
Q 017476 318 MLKPGGFFAFETN 330 (371)
Q Consensus 318 ~LkpgG~lvle~~ 330 (371)
.|++||++++-++
T Consensus 158 QL~~gGrlv~PvG 170 (209)
T COG2518 158 QLKPGGRLVIPVG 170 (209)
T ss_pred hcccCCEEEEEEc
Confidence 8999999999994
No 135
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.27 E-value=6.4e-11 Score=111.18 Aligned_cols=120 Identities=17% Similarity=0.323 Sum_probs=98.3
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (371)
Q Consensus 173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~ 252 (371)
.+++-.+...+.... .+++|||+||++|.-++.+|+.++++++|+.+|.+++..+.|++|++..|+.++|+++
T Consensus 64 ~~~~g~lL~~l~~~~-------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~ 136 (247)
T PLN02589 64 SADEGQFLNMLLKLI-------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFR 136 (247)
T ss_pred CHHHHHHHHHHHHHh-------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEE
Confidence 456666677666654 4669999999999999999998767889999999999999999999999999999999
Q ss_pred EcCcccccccC------CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476 253 QGSWFGKLKDV------EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA 326 (371)
Q Consensus 253 ~gD~~~~l~~~------~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv 326 (371)
.||+.+.++.+ .++||+|+.+ +. -..|...++.+.++|++||.++
T Consensus 137 ~G~a~e~L~~l~~~~~~~~~fD~iFiD------------------ad-----------K~~Y~~y~~~~l~ll~~GGviv 187 (247)
T PLN02589 137 EGPALPVLDQMIEDGKYHGTFDFIFVD------------------AD-----------KDNYINYHKRLIDLVKVGGVIG 187 (247)
T ss_pred eccHHHHHHHHHhccccCCcccEEEec------------------CC-----------HHHhHHHHHHHHHhcCCCeEEE
Confidence 99998766542 2689999983 10 2335567777789999999998
Q ss_pred EE
Q 017476 327 FE 328 (371)
Q Consensus 327 le 328 (371)
+.
T Consensus 188 ~D 189 (247)
T PLN02589 188 YD 189 (247)
T ss_pred Ec
Confidence 85
No 136
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.27 E-value=8.5e-11 Score=117.32 Aligned_cols=103 Identities=24% Similarity=0.283 Sum_probs=81.5
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
..++.+|||+|||+|.++..+++.. +.+|+|+|+|+++++.|++++. ++ .+++..+|+.+. .++||.|++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----~~~fD~Ivs 234 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----NGQFDRIVS 234 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----CCCCCEEEE
Confidence 3456799999999999999999874 5799999999999999999884 33 388888987542 368999999
Q ss_pred cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+..+. |- |...+..+++.+.++|||||.+++..
T Consensus 235 ~~~~e--------------hv----------g~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 235 VGMFE--------------HV----------GPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred eCchh--------------hC----------ChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 64321 10 12345678999999999999999965
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.25 E-value=3.2e-10 Score=108.04 Aligned_cols=152 Identities=12% Similarity=0.162 Sum_probs=103.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcCcccccccCCCceeEEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--l-~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
.+++||++|||+|.++..+++.. +..+++++|+++++++.|++++...+ + ..+++++.+|..+.+....++||+||
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45699999999999999888752 45789999999999999999875542 1 24689999998776654457899999
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCCc
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACSF 350 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~gf 350 (371)
+|++...... .. -....+++.+.+.|+|||.+++.... ..+.+.+..+.+.. +.-|
T Consensus 151 ~D~~~~~~~~--------------~~--------l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl-~~~F 207 (270)
T TIGR00417 151 VDSTDPVGPA--------------ET--------LFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDV-KEAF 207 (270)
T ss_pred EeCCCCCCcc--------------cc--------hhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHH-HHHC
Confidence 9876421110 00 01246788889999999999997642 22344444433322 1337
Q ss_pred eeEEEEec----C-CCCceEEEEEe
Q 017476 351 CNVSIVSD----F-AGIQRFVTGFR 370 (371)
Q Consensus 351 ~~v~~~~D----l-~g~~R~~~a~~ 370 (371)
..+..+.. + .|..=|++|.+
T Consensus 208 ~~v~~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 208 PITEYYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred CCeEEEEEEcCccccchhEEEEEEC
Confidence 76665433 2 35556666654
No 138
>PRK01581 speE spermidine synthase; Validated
Probab=99.25 E-value=5.3e-10 Score=109.60 Aligned_cols=197 Identities=13% Similarity=0.143 Sum_probs=118.2
Q ss_pred CCceeeEeecccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEE
Q 017476 146 RKPFQYLVGCEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIA 225 (371)
Q Consensus 146 ~~P~~yi~g~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~g 225 (371)
.-|+|.|.-... .++.+.++-.+-+-..+-..+.+.+...... ....+++||++|||+|..+..+.+. .+..+|++
T Consensus 104 ~S~yQ~I~I~et-~~~~L~LDG~~Q~se~DE~iYHE~Lvhp~m~--~h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~ 179 (374)
T PRK01581 104 KSNYQNINLLQV-SDIRLYLDKQLQFSSVDEQIYHEALVHPIMS--KVIDPKRVLILGGGDGLALREVLKY-ETVLHVDL 179 (374)
T ss_pred CCCCceEEEEEc-CCEEEEECCeeccccccHHHHHHHHHHHHHH--hCCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEE
Confidence 357777643211 1234444444333322322233333321111 1234679999999999998888875 35579999
Q ss_pred EeCCHHHHHHHHHHH-----HHcCC-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCcccccc
Q 017476 226 VDLNPLAAAVAAFNA-----QRYGL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALD 299 (371)
Q Consensus 226 vDis~~al~~A~~n~-----~~~gl-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~ 299 (371)
||+++++++.|++.- ....+ .++++++.+|..+.+....++||+|++|.|-...... .
T Consensus 180 VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~-------------~--- 243 (374)
T PRK01581 180 VDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELL-------------S--- 243 (374)
T ss_pred EeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccch-------------h---
Confidence 999999999999631 11122 4589999999988776556789999998653211000 0
Q ss_pred CCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHH----HHHHHHhccccCCceeE---EEEecCCCCceEEEEEe
Q 017476 300 GGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCK----FLKNYLENDSACSFCNV---SIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 300 gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~----~v~~~l~~~~~~gf~~v---~~~~Dl~g~~R~~~a~~ 370 (371)
--.-..+++.+.+.|+|||++++......... .+.+.+++ .+|... ...+-+.+..-|++|.+
T Consensus 244 -----~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~---af~~v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 244 -----TLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEH---AGLTVKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred -----hhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHH---hCCceEEEEEecCCCCCceEEEEEeC
Confidence 01124688889999999999988764333222 23444553 444322 12344555577777753
No 139
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.25 E-value=5.1e-11 Score=108.42 Aligned_cols=127 Identities=28% Similarity=0.383 Sum_probs=86.9
Q ss_pred ceeeEeeCC--cccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 160 DLVLSVEEG--VFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 160 ~~~~~v~~~--vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
|..|.++.. .|-||-.+|.. .+.+.. .++.+|+|++||.|.+++.+|+. .....|+|+|++|.+++.++
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~--Ri~~~v------~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~ 142 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERR--RIANLV------KPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLK 142 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHH--HHHTC--------TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHH--HHHhcC------CcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHH
Confidence 555655544 44577666652 222222 24679999999999999999995 36679999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (371)
Q Consensus 238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~ 317 (371)
+|++.|++++++..+++|..+.+. .+.||-|++|.|.... .++..+..
T Consensus 143 ~Ni~lNkv~~~i~~~~~D~~~~~~--~~~~drvim~lp~~~~------------------------------~fl~~~~~ 190 (200)
T PF02475_consen 143 ENIRLNKVENRIEVINGDAREFLP--EGKFDRVIMNLPESSL------------------------------EFLDAALS 190 (200)
T ss_dssp HHHHHTT-TTTEEEEES-GGG-----TT-EEEEEE--TSSGG------------------------------GGHHHHHH
T ss_pred HHHHHcCCCCeEEEEcCCHHHhcC--ccccCEEEECChHHHH------------------------------HHHHHHHH
Confidence 999999999999999999987665 4799999999885310 46667778
Q ss_pred ccccCcEEEE
Q 017476 318 MLKPGGFFAF 327 (371)
Q Consensus 318 ~LkpgG~lvl 327 (371)
++++||++-+
T Consensus 191 ~~~~~g~ihy 200 (200)
T PF02475_consen 191 LLKEGGIIHY 200 (200)
T ss_dssp HEEEEEEEEE
T ss_pred HhcCCcEEEC
Confidence 9999998753
No 140
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.23 E-value=6.2e-11 Score=112.63 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEECCcccH----HHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHH----HcC
Q 017476 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQ----RYG 244 (371)
Q Consensus 177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~----~al~la~~~~----~~~~V~gvDis~~al~~A~~n~~----~~g 244 (371)
+.+.+.++..+........+.+|+|+|||+|. +++.+++.+. .+.+|+|+|+|+.|++.|++++. ..+
T Consensus 81 ~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~ 160 (264)
T smart00138 81 EALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELED 160 (264)
T ss_pred HHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhc
Confidence 44555555544222122235699999999996 5666666542 14689999999999999998641 011
Q ss_pred ----------------------CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCC
Q 017476 245 ----------------------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV 302 (371)
Q Consensus 245 ----------------------l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~ 302 (371)
+.++|+|.++|+.+... ..++||+|+|. .+..|-+
T Consensus 161 ~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~cr--------------nvl~yf~-------- 217 (264)
T smart00138 161 LPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCR--------------NVLIYFD-------- 217 (264)
T ss_pred CCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEec--------------hhHHhCC--------
Confidence 12468999999987533 24789999992 1111111
Q ss_pred CcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 303 DGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 303 dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
-.....+++.+.+.|+|||++++.+
T Consensus 218 --~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 218 --EPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred --HHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1223478899999999999999976
No 141
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.23 E-value=1.4e-10 Score=101.84 Aligned_cols=78 Identities=32% Similarity=0.493 Sum_probs=60.9
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC-Cc-eeEEEEcCC
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GK-LSGVVSNPP 275 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~-~~-fDlIvsNPP 275 (371)
.|+|++||.|..++.+|+.+ .+|+|||+++..++.|+.|++.+|+.++|+++++|+++.+.... .. +|+|+..||
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC
Confidence 69999999999999999975 68999999999999999999999999999999999998765432 12 899999999
Q ss_pred CCC
Q 017476 276 YIP 278 (371)
Q Consensus 276 Yi~ 278 (371)
|..
T Consensus 79 WGG 81 (163)
T PF09445_consen 79 WGG 81 (163)
T ss_dssp BSS
T ss_pred CCC
Confidence 974
No 142
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.23 E-value=1.5e-10 Score=113.47 Aligned_cols=134 Identities=25% Similarity=0.244 Sum_probs=101.1
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCC-------------------------------
Q 017476 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSK------------------------------- 220 (371)
Q Consensus 172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~------------------------------- 220 (371)
|-|.-|.|...++... +..++..++|.-||||.+++..|... ++
T Consensus 172 ~ApLketLAaAil~la----gw~~~~pl~DPmCGSGTi~IEAAl~~-~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~ 246 (381)
T COG0116 172 PAPLKETLAAAILLLA----GWKPDEPLLDPMCGSGTILIEAALIA-ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEE 246 (381)
T ss_pred CCCchHHHHHHHHHHc----CCCCCCccccCCCCccHHHHHHHHhc-cccCCccccccchhhhhhccHHHHHHHHHHHHH
Confidence 3466677777666543 33345689999999999999999763 21
Q ss_pred -c-------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhccc
Q 017476 221 -G-------SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKH 292 (371)
Q Consensus 221 -~-------~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ 292 (371)
+ .++|+|+++.+++.|+.|+++.|+.+.|+|.++|+...-+.. +.+|+|||||||.-.- ..+
T Consensus 247 ~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeRl-----g~~---- 316 (381)
T COG0116 247 RARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL-EEYGVVISNPPYGERL-----GSE---- 316 (381)
T ss_pred HHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC-CcCCEEEeCCCcchhc-----CCh----
Confidence 1 377999999999999999999999999999999996543322 6899999999996321 000
Q ss_pred CccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 293 EPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 293 ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+ .--..|+.+.+.+.+.++.-+..++..
T Consensus 317 ----~-----~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 317 ----A-----LVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred ----h-----hHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 0 012378889888889998888888877
No 143
>PTZ00146 fibrillarin; Provisional
Probab=99.23 E-value=4.9e-10 Score=107.02 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
.|...++.-+ ......++.+|||+|||+|.++..+++..++...|+|||+++.+++...+.+... .+|.++.+|..
T Consensus 116 Klaa~i~~g~-~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~ 191 (293)
T PTZ00146 116 KLAAAIIGGV-ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR 191 (293)
T ss_pred HHHHHHHCCc-ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence 4444444433 2233446679999999999999999998766789999999997664444333221 24889999986
Q ss_pred ccc--ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-----
Q 017476 258 GKL--KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN----- 330 (371)
Q Consensus 258 ~~l--~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~----- 330 (371)
.+. ....+.||+|+++-. +| +..+.++.++.++|||||.+++.+.
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva-----------------~p-----------dq~~il~~na~r~LKpGG~~vI~ika~~id 243 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVA-----------------QP-----------DQARIVALNAQYFLKNGGHFIISIKANCID 243 (293)
T ss_pred ChhhhhcccCCCCEEEEeCC-----------------Cc-----------chHHHHHHHHHHhccCCCEEEEEEeccccc
Confidence 542 112357999999532 11 1233566678899999999999642
Q ss_pred -CcCcHHHH---HHHHhccccCCceeEEEEe
Q 017476 331 -GEKQCKFL---KNYLENDSACSFCNVSIVS 357 (371)
Q Consensus 331 -~~~q~~~v---~~~l~~~~~~gf~~v~~~~ 357 (371)
+....+.+ .+.|++ .+|..++...
T Consensus 244 ~g~~pe~~f~~ev~~L~~---~GF~~~e~v~ 271 (293)
T PTZ00146 244 STAKPEVVFASEVQKLKK---EGLKPKEQLT 271 (293)
T ss_pred cCCCHHHHHHHHHHHHHH---cCCceEEEEe
Confidence 11111211 355654 7898766653
No 144
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.23 E-value=1.4e-10 Score=112.98 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=85.1
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (371)
Q Consensus 179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~ 258 (371)
+...+++.+ +..++.+|||+|||+|.++..+++..+..+.|+++|+++++++.|++|++.++.. ++.++++|..+
T Consensus 68 l~a~ll~~L----~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~ 142 (322)
T PRK13943 68 LMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYY 142 (322)
T ss_pred HHHHHHHhc----CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhh
Confidence 444444444 2335679999999999999999997633468999999999999999999999985 49999999876
Q ss_pred ccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 259 KLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 259 ~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
.... .+.||+|+++.. .. .+...+.+.|+|||.+++..+
T Consensus 143 ~~~~-~~~fD~Ii~~~g-----------------------------~~---~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 143 GVPE-FAPYDVIFVTVG-----------------------------VD---EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred cccc-cCCccEEEECCc-----------------------------hH---HhHHHHHHhcCCCCEEEEEeC
Confidence 5443 257999998411 00 122234578999999998763
No 145
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.23 E-value=1.5e-10 Score=110.39 Aligned_cols=108 Identities=22% Similarity=0.288 Sum_probs=81.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhCC--CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGS--KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~--~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
..+|||+|||+|.++..+++.+.. ...|+|+|+|+.+++.|+++. .++.+..+|..+ ++..++.||+|+++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~-lp~~~~sfD~I~~~ 158 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHR-LPFADQSLDAIIRI 158 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeeccc-CCCcCCceeEEEEe
Confidence 468999999999999999887522 237999999999999998752 248899999865 33335789999983
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE 343 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~ 343 (371)
+ .| ..++++.+.|||||++++...+.....+++..+.
T Consensus 159 --~----------------~~---------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~~ 195 (272)
T PRK11088 159 --Y----------------AP---------------CKAEELARVVKPGGIVITVTPGPRHLFELKGLIY 195 (272)
T ss_pred --c----------------CC---------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHhc
Confidence 1 01 1234567899999999999877666666666653
No 146
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.23 E-value=1.5e-10 Score=123.95 Aligned_cols=103 Identities=22% Similarity=0.237 Sum_probs=80.3
Q ss_pred ccchHHHHHHHHHHHhhhcCCC-CCCCeEEEECCcccHHHHHHHHHhC--------------------------------
Q 017476 172 PRPETELMVDLVSDVLVRDNDG-LRDGFWVDLGTGSGAIAIGIARVLG-------------------------------- 218 (371)
Q Consensus 172 Prp~te~lv~~~~~~~~~~~~~-~~~~~VLDlG~GsG~~al~la~~~~-------------------------------- 218 (371)
|-|..|.++..++... .. ..+..++|++||||.+.+..|....
T Consensus 170 ~Apl~etlAaa~l~~a----~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~ 245 (702)
T PRK11783 170 EAPLKENLAAAILLRS----GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQ 245 (702)
T ss_pred CCCCcHHHHHHHHHHc----CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHH
Confidence 4466677777776543 22 2356899999999999999876310
Q ss_pred ---------CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCCCC
Q 017476 219 ---------SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIP 278 (371)
Q Consensus 219 ---------~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~ 278 (371)
...+++|+|+++.+++.|++|+..+|+.+.+++.++|+.+..... .++||+||+||||..
T Consensus 246 ~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 246 ERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGE 315 (702)
T ss_pred HHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcC
Confidence 123699999999999999999999999888999999997643221 257999999999975
No 147
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.23 E-value=2.2e-10 Score=110.82 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=91.1
Q ss_pred cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 017476 173 RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIR 252 (371)
Q Consensus 173 rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~ 252 (371)
|.|.+.+.+.+.+.. ... .++.+|||+|||+|..+..+++.+....+++|+|+|++||+.|++++......-++.++
T Consensus 44 r~E~~il~~~~~~ia-~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i 120 (301)
T TIGR03438 44 RTEAAILERHADEIA-AAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGI 120 (301)
T ss_pred HHHHHHHHHHHHHHH-Hhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEE
Confidence 566666666555443 211 23568999999999999999988622579999999999999999998764322347889
Q ss_pred EcCcccccccCCCce---e--EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 253 QGSWFGKLKDVEGKL---S--GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 253 ~gD~~~~l~~~~~~f---D--lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
++|+.+.+... ..+ + ++++.-. +..+. .+....+++.+.+.|+|||.+++
T Consensus 121 ~gD~~~~~~~~-~~~~~~~~~~~~~gs~------~~~~~------------------~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 121 CADFTQPLALP-PEPAAGRRLGFFPGST------IGNFT------------------PEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEcccchhhhh-cccccCCeEEEEeccc------ccCCC------------------HHHHHHHHHHHHHhcCCCCEEEE
Confidence 99997653221 222 2 3332111 11111 23345789999999999999999
Q ss_pred EECCcCcHH
Q 017476 328 ETNGEKQCK 336 (371)
Q Consensus 328 e~~~~~q~~ 336 (371)
-++...+.+
T Consensus 176 g~d~~~~~~ 184 (301)
T TIGR03438 176 GVDLVKDPA 184 (301)
T ss_pred eccCCCCHH
Confidence 775444433
No 148
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.22 E-value=1.3e-10 Score=114.76 Aligned_cols=108 Identities=23% Similarity=0.302 Sum_probs=77.1
Q ss_pred ceeeEeeCCcccc--cchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 160 DLVLSVEEGVFIP--RPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 160 ~~~~~v~~~vliP--rp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
++.|.++++.|+. ...++.|++.+.+++ . .. +..+||+.||+|.+++.+|+.+ .+|+|||+++.+++.|+
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l-~---~~-~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWL-D---LS-KGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHC-T---T--TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHH
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHh-h---cC-CCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHH
Confidence 4678999999984 477899999999988 2 22 2379999999999999999853 69999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcCcccccc------------c---CCCceeEEEEcCCC
Q 017476 238 FNAQRYGLQDIIEIRQGSWFGKLK------------D---VEGKLSGVVSNPPY 276 (371)
Q Consensus 238 ~n~~~~gl~~~v~~~~gD~~~~l~------------~---~~~~fDlIvsNPPY 276 (371)
+|++.+++.+ ++|+.++..+... . ....+|+|+.|||=
T Consensus 236 ~Na~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 236 ENAKLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp HHHHHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T
T ss_pred HHHHHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC
Confidence 9999999976 9999887643211 0 01368999999993
No 149
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.21 E-value=1.2e-10 Score=116.11 Aligned_cols=101 Identities=21% Similarity=0.181 Sum_probs=82.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
..+|||++||+|.+++.++.+. +..+|+++|+++.+++.+++|++.+++.+ ++++++|+.+.+.. .++||+|+.|||
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~-~~~fD~V~lDP~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHE-ERKFDVVDIDPF 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhh-cCCCCEEEECCC
Confidence 3589999999999999999875 44589999999999999999999999875 78999998665432 357999999986
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
. .. ..+++.+...+++||++++..
T Consensus 135 -G-s~----------------------------~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 -G-SP----------------------------APFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred -C-Cc----------------------------HHHHHHHHHHhcCCCEEEEEe
Confidence 1 11 145666667889999999964
No 150
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.21 E-value=1.4e-10 Score=90.89 Aligned_cols=103 Identities=25% Similarity=0.417 Sum_probs=81.3
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi 277 (371)
+|+|+|||+|.++..+++ . +..+++++|+++.++..++++....+ ..+++++.+|+.+......++||+|++|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEcccee
Confidence 489999999999999988 3 57899999999999999986544443 34599999999876542346899999999875
Q ss_pred CCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 278 ~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
.. ......+++.+.+.|++||.+++.
T Consensus 78 ~~-------------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL-------------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh-------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 31 123447888888999999999876
No 151
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.21 E-value=4.6e-10 Score=103.58 Aligned_cols=88 Identities=27% Similarity=0.341 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
...+.+..++ ......++.+|||+|||+|.++..+++. +..|+|+|+|+.+++.|+++....+..+++.+..+|+
T Consensus 47 ~~~~~~~~~l-~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~- 121 (230)
T PRK07580 47 RMRDTVLSWL-PADGDLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL- 121 (230)
T ss_pred HHHHHHHHHH-HhcCCCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc-
Confidence 3444555554 2211234679999999999999999885 3579999999999999999998888766799999994
Q ss_pred cccccCCCceeEEEEc
Q 017476 258 GKLKDVEGKLSGVVSN 273 (371)
Q Consensus 258 ~~l~~~~~~fDlIvsN 273 (371)
+. ..+.||+|+++
T Consensus 122 ~~---~~~~fD~v~~~ 134 (230)
T PRK07580 122 ES---LLGRFDTVVCL 134 (230)
T ss_pred hh---ccCCcCEEEEc
Confidence 32 23689999984
No 152
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.20 E-value=4.9e-10 Score=103.93 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (371)
Q Consensus 176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD 255 (371)
+...++++.... ...++.+|||+|||+|.++..+++. +.+++++|+++.+++.|++|+...+. .+.++.+|
T Consensus 33 ~~~~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~ 103 (233)
T PRK05134 33 NPLRLNYIREHA----GGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTT 103 (233)
T ss_pred hHHHHHHHHHhc----cCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecC
Confidence 334445554443 2235679999999999999988874 46899999999999999999887765 37888888
Q ss_pred cccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 256 WFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 256 ~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+.+......++||+|+++-.+ .|.+ ....+++.+.+.|+|||.+++..
T Consensus 104 ~~~~~~~~~~~fD~Ii~~~~l--------------~~~~------------~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 104 AEELAAEHPGQFDVVTCMEML--------------EHVP------------DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred HHHhhhhcCCCccEEEEhhHh--------------hccC------------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 865432234789999984221 1111 12367888899999999999875
No 153
>PLN02366 spermidine synthase
Probab=99.19 E-value=1.3e-09 Score=105.66 Aligned_cols=199 Identities=16% Similarity=0.191 Sum_probs=118.7
Q ss_pred CCceeeEee-cccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476 146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (371)
Q Consensus 146 ~~P~~yi~g-~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~ 224 (371)
.-|.|.|.- +..-++..+.++-.+-+-..+ |.....++..+ .......+++||++|||.|.++..+++. .+..+|+
T Consensus 43 ~s~yQ~i~v~~~~~~g~~L~lDg~~q~~~~d-e~~Y~e~l~h~-~l~~~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~ 119 (308)
T PLN02366 43 KSDFQDVLVFESATYGKVLVLDGVIQLTERD-ECAYQEMITHL-PLCSIPNPKKVLVVGGGDGGVLREIARH-SSVEQID 119 (308)
T ss_pred cCCCeeEEEEEcCCCceEEEECCEeeecCcc-HHHHHHHHHHH-HHhhCCCCCeEEEEcCCccHHHHHHHhC-CCCCeEE
Confidence 356666533 112234555555543333333 22223233222 1111234679999999999999999885 3456899
Q ss_pred EEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccC
Q 017476 225 AVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300 (371)
Q Consensus 225 gvDis~~al~~A~~n~~~~--gl-~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~g 300 (371)
.||+++.+++.|++.+... ++ .+|++++.+|..+.+... .++||+|+++.+-.. .|..
T Consensus 120 ~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~--------------~~~~---- 181 (308)
T PLN02366 120 ICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPV--------------GPAQ---- 181 (308)
T ss_pred EEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCC--------------Cchh----
Confidence 9999999999999987543 23 348999999987765543 468999999643110 0000
Q ss_pred CCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCCc-eeEEEE----ecC-CCCceEEEEEe
Q 017476 301 GVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACSF-CNVSIV----SDF-AGIQRFVTGFR 370 (371)
Q Consensus 301 g~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~gf-~~v~~~----~Dl-~g~~R~~~a~~ 370 (371)
--....+++.+.+.|+|||+++..... +.+.+.+..+++.. ..-| ..+..+ +-+ .|..-|++|-+
T Consensus 182 ----~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl-~~~F~~~v~~~~~~vPsy~~g~w~f~~as~ 253 (308)
T PLN02366 182 ----ELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAIC-RETFKGSVNYAWTTVPTYPSGVIGFVLCSK 253 (308)
T ss_pred ----hhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHH-HHHCCCceeEEEecCCCcCCCceEEEEEEC
Confidence 112347888899999999999886532 23344444444432 1235 344332 123 25566666643
No 154
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.19 E-value=1e-09 Score=100.88 Aligned_cols=105 Identities=24% Similarity=0.258 Sum_probs=81.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
.+.+|||+|||+|.++..+++. ..+++++|+++.+++.+++|+...+.. ++++..+|+.+......++||+|+++-
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 4679999999999999988874 357999999999999999999887764 488999987654332236899999842
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.. .|. .....+++.+.+.|++||.+++..
T Consensus 121 ~l--------------~~~------------~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 121 VL--------------EHV------------PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HH--------------HhC------------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 21 111 123468888899999999998865
No 155
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=2.4e-10 Score=105.58 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=74.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEcCccccc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL--------------QDIIEIRQGSWFGKL 260 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl--------------~~~v~~~~gD~~~~l 260 (371)
++.+|||+|||.|..++.||+. +.+|+|||+|+.|++.+.+ .+++ ..+|++.++|+++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT 110 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC
Confidence 3569999999999999999984 6899999999999998643 2222 246899999998764
Q ss_pred ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 261 ~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
....+.||+|+- ...+..++++ .-..+++.+.+.|+|||++++
T Consensus 111 ~~~~~~fd~v~D------~~~~~~l~~~------------------~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 111 AADLADVDAVYD------RAALIALPEE------------------MRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cccCCCeeEEEe------hHhHhhCCHH------------------HHHHHHHHHHHHcCCCCeEEE
Confidence 433367999884 1111222222 223678888999999997555
No 156
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.17 E-value=3e-10 Score=103.20 Aligned_cols=141 Identities=23% Similarity=0.335 Sum_probs=101.7
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCceeEEEEcCC
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSGVVSNPP 275 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fDlIvsNPP 275 (371)
.+||+|||.|.+.+.+|... |+..++|+|++...+..|.+.+...++.| +.++++|+...+... ++++|.|..|-|
T Consensus 20 l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 89999999999999999985 99999999999999999999999999976 999999987644321 478999999866
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEE
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSI 355 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~ 355 (371)
=.+... +|.-+. +. -..+++...+.|+|||.+.+-++.....+.+.+.+.+. ..+|..+..
T Consensus 98 DPWpK~---------rH~krR-l~--------~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~-~~~f~~~~~ 158 (195)
T PF02390_consen 98 DPWPKK---------RHHKRR-LV--------NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES-HPGFENIEE 158 (195)
T ss_dssp ----SG---------GGGGGS-TT--------SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH-STTEEEE-T
T ss_pred CCCccc---------chhhhh-cC--------CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc-CcCeEEccc
Confidence 432221 111111 11 12688888999999999999997777778888888762 156766543
Q ss_pred EecC
Q 017476 356 VSDF 359 (371)
Q Consensus 356 ~~Dl 359 (371)
..++
T Consensus 159 ~~~~ 162 (195)
T PF02390_consen 159 SDDL 162 (195)
T ss_dssp ESSG
T ss_pred Cccc
Confidence 3343
No 157
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.17 E-value=5.7e-10 Score=113.73 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=104.3
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
.++.+|||+|+|.|.-+..+|..++..+.|+++|+++.-++.+++|+++.|+.+ +.+...|.........+.||.|+.+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEEEc
Confidence 356799999999999999999988667899999999999999999999999975 8888888754322334679999999
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHH-HHHHHHHHHhcccccCcEEEEEECC---cCcHHHHHHHHhc
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD-YLLHLCNGTASMLKPGGFFAFETNG---EKQCKFLKNYLEN 344 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~-~~~~il~~a~~~LkpgG~lvle~~~---~~q~~~v~~~l~~ 344 (371)
+|+...+.+..-+.....+.+... .-+. .=++|+..+.++|||||+|++.+-. ....+.|..++++
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v-----~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESN-----LEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHH-----HHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999876655432211111211110 0011 2257999999999999999998743 2233344555554
No 158
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.16 E-value=2.1e-10 Score=110.54 Aligned_cols=92 Identities=20% Similarity=0.266 Sum_probs=73.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
.+++.+++.. ...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.+++|+..++..++++++++|+.
T Consensus 23 ~i~~~Iv~~~----~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal 95 (294)
T PTZ00338 23 LVLDKIVEKA----AIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL 95 (294)
T ss_pred HHHHHHHHhc----CCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence 3445555444 2335679999999999999999885 36899999999999999999988776567999999997
Q ss_pred cccccCCCceeEEEEcCCCCCC
Q 017476 258 GKLKDVEGKLSGVVSNPPYIPS 279 (371)
Q Consensus 258 ~~l~~~~~~fDlIvsNPPYi~~ 279 (371)
+.. ...||.||+|+||.-.
T Consensus 96 ~~~---~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 96 KTE---FPYFDVCVANVPYQIS 114 (294)
T ss_pred hhc---ccccCEEEecCCcccC
Confidence 642 2478999999999643
No 159
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.15 E-value=4.5e-10 Score=97.17 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=69.0
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
.++.+|||+|||+|.++..+++. +.+++|+|+++.+++. . .+.....+.... ....++||+|+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-------~----~~~~~~~~~~~~-~~~~~~fD~i~~~ 85 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-------R----NVVFDNFDAQDP-PFPDGSFDLIICN 85 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-------T----TSEEEEEECHTH-HCHSSSEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-------h----hhhhhhhhhhhh-hccccchhhHhhH
Confidence 35679999999999999999764 3499999999999887 1 122222211111 1124799999994
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG 331 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~ 331 (371)
.+..|- .....+++.+.++|||||++++....
T Consensus 86 --------------~~l~~~------------~d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 86 --------------DVLEHL------------PDPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp --------------SSGGGS------------SHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred --------------HHHhhc------------ccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 233332 23558899999999999999998854
No 160
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=9.3e-11 Score=99.59 Aligned_cols=83 Identities=24% Similarity=0.400 Sum_probs=70.6
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
+...+++++|+|||.|.+.++.+. + ....|+|+||+++|++.+.+|+....++ +.+++.|..+.... .+.||.+|
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~sm-~-~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-~g~fDtav 119 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFSM-P-KNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-GGIFDTAV 119 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhhc-C-CCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-CCeEeeEE
Confidence 456788999999999999977665 3 5668999999999999999999988776 79999999875443 48999999
Q ss_pred EcCCCCCC
Q 017476 272 SNPPYIPS 279 (371)
Q Consensus 272 sNPPYi~~ 279 (371)
.||||...
T Consensus 120 iNppFGTk 127 (185)
T KOG3420|consen 120 INPPFGTK 127 (185)
T ss_pred ecCCCCcc
Confidence 99999754
No 161
>PRK05785 hypothetical protein; Provisional
Probab=99.12 E-value=1.7e-09 Score=100.49 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=90.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
+.+|||+|||+|.++..+++.. +.+|+|+|+|++|++.|+++ ..++++|+.+ ++..+++||+|+++--
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~-lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEA-LPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhh-CCCCCCCEEEEEecCh
Confidence 5699999999999999999874 46999999999999999864 1356788754 4444689999999532
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC------------------------
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG------------------------ 331 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~------------------------ 331 (371)
. +| .......++++.+.|||. ..++|...
T Consensus 120 l--------------~~------------~~d~~~~l~e~~RvLkp~-~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~ 172 (226)
T PRK05785 120 L--------------HA------------SDNIEKVIAEFTRVSRKQ-VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACL 172 (226)
T ss_pred h--------------hc------------cCCHHHHHHHHHHHhcCc-eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 112346777888888883 33455421
Q ss_pred -----------------cCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476 332 -----------------EKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ 371 (371)
Q Consensus 332 -----------------~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~ 371 (371)
....+++.+++++ . +..++...-..|+--+.+|+|+
T Consensus 173 ~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~---~-~~~~~~~~~~~G~~~~~~~~k~ 225 (226)
T PRK05785 173 AGAKCRDYKYIYYIYERLPTNSFHREIFEK---Y-ADIKVYEERGLGLVYFVVGSSR 225 (226)
T ss_pred hcCChHHHHHHHHHHHHCCCHHHHHHHHHH---H-hCceEEEEccccEEEEEEEeeC
Confidence 1123445555554 2 3457777777777777777764
No 162
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.10 E-value=6.8e-10 Score=113.85 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=78.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-cccCCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-l~~~~~~fDlIvsN 273 (371)
++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+++. ++...+++++++|+.+. ++...++||+|++|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDGSVDLIFSN 110 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCCCEEEEehh
Confidence 45699999999999999999863 5899999999999876542 23334699999998642 22234789999998
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
.++... . -+....+++.+.+.|||||++++.
T Consensus 111 ~~l~~l------~------------------~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 111 WLLMYL------S------------------DKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhHHhC------C------------------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 764311 1 122457889999999999999885
No 163
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.10 E-value=8.8e-10 Score=99.86 Aligned_cols=132 Identities=21% Similarity=0.255 Sum_probs=93.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
.+.-|||||||||.-+..+.. ++...+|||+|+.||++|.+. .. + -.++.+|+-+.++...+.||.+||
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~---~Gh~wiGvDiSpsML~~a~~~--e~--e--gdlil~DMG~GlpfrpGtFDg~IS-- 118 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSD---SGHQWIGVDISPSMLEQAVER--EL--E--GDLILCDMGEGLPFRPGTFDGVIS-- 118 (270)
T ss_pred CCcEEEEeccCCCcchheecc---CCceEEeecCCHHHHHHHHHh--hh--h--cCeeeeecCCCCCCCCCccceEEE--
Confidence 467899999999999888766 457899999999999999872 22 1 368889999988887899999988
Q ss_pred CCCCCCCcccch-hhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476 275 PYIPSDDISGLQ-VEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN 352 (371)
Q Consensus 275 PYi~~~~~~~l~-~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~ 352 (371)
|. .+.-+. ..-..|.|+ .-+..|+...+..|++|+..++..- ....+++..++.+...+||..
T Consensus 119 --IS--AvQWLcnA~~s~~~P~----------~Rl~~FF~tLy~~l~rg~raV~QfY-pen~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 119 --IS--AVQWLCNADKSLHVPK----------KRLLRFFGTLYSCLKRGARAVLQFY-PENEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred --ee--eeeeecccCccccChH----------HHHHHHhhhhhhhhccCceeEEEec-ccchHHHHHHHHHHHhhccCC
Confidence 11 111111 111234443 4455788889999999999999883 334444444444433477754
No 164
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.10 E-value=5.8e-10 Score=105.62 Aligned_cols=76 Identities=25% Similarity=0.329 Sum_probs=63.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+++++.. .++++++++|+.+. .. ..||.|++||
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~-~~--~~~d~Vv~Nl 99 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKV-DL--PEFNKVVSNL 99 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccC-Cc--hhceEEEEcC
Confidence 4679999999999999999996 35899999999999999998754 24699999999763 21 3589999999
Q ss_pred CCCCC
Q 017476 275 PYIPS 279 (371)
Q Consensus 275 PYi~~ 279 (371)
||...
T Consensus 100 Py~i~ 104 (258)
T PRK14896 100 PYQIS 104 (258)
T ss_pred CcccC
Confidence 99743
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.09 E-value=3.7e-10 Score=107.77 Aligned_cols=88 Identities=22% Similarity=0.229 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (371)
Q Consensus 179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~ 258 (371)
+++.+++.+ ...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++|+.. ++++++++|+.+
T Consensus 30 i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~ 98 (272)
T PRK00274 30 ILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALK 98 (272)
T ss_pred HHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhc
Confidence 344444444 22346799999999999999999973 3899999999999999987642 469999999976
Q ss_pred ccccCCCceeEEEEcCCCCC
Q 017476 259 KLKDVEGKLSGVVSNPPYIP 278 (371)
Q Consensus 259 ~l~~~~~~fDlIvsNPPYi~ 278 (371)
.... .-.+|.||+||||.-
T Consensus 99 ~~~~-~~~~~~vv~NlPY~i 117 (272)
T PRK00274 99 VDLS-ELQPLKVVANLPYNI 117 (272)
T ss_pred CCHH-HcCcceEEEeCCccc
Confidence 4211 111599999999964
No 166
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.08 E-value=2.2e-09 Score=102.27 Aligned_cols=133 Identities=24% Similarity=0.253 Sum_probs=91.2
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
....+++|||+|||+|..+..++.+ ....|+|+|.+.......+--.+..|....+..+. ...+.++. .+.||+|+
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~-~~~FDtVF 187 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPN-LGAFDTVF 187 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccc-cCCcCEEE
Confidence 3457889999999999999999986 44689999999987665443333334333333432 23344554 57899999
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---C-----------------
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---G----------------- 331 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---~----------------- 331 (371)
| -.|..|.. ..-..+.+..+.|++||.+++|+. |
T Consensus 188 ~--------------MGVLYHrr------------~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~n 241 (315)
T PF08003_consen 188 S--------------MGVLYHRR------------SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRN 241 (315)
T ss_pred E--------------eeehhccC------------CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCc
Confidence 9 23444421 122566777899999999999863 1
Q ss_pred ---cCcHHHHHHHHhccccCCceeEEEEe
Q 017476 332 ---EKQCKFLKNYLENDSACSFCNVSIVS 357 (371)
Q Consensus 332 ---~~q~~~v~~~l~~~~~~gf~~v~~~~ 357 (371)
.-....+..++++ .||.+|++..
T Consensus 242 v~FiPs~~~L~~wl~r---~gF~~v~~v~ 267 (315)
T PF08003_consen 242 VWFIPSVAALKNWLER---AGFKDVRCVD 267 (315)
T ss_pred eEEeCCHHHHHHHHHH---cCCceEEEec
Confidence 1135677888885 7899998764
No 167
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.05 E-value=1.7e-09 Score=107.42 Aligned_cols=102 Identities=19% Similarity=0.161 Sum_probs=84.4
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCC
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPY 276 (371)
.+|||+.||+|..++.++.+.....+|+++|+|+++++.+++|++.+++. +++++++|....+.....+||+|..||+.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPfG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPFG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCCC
Confidence 58999999999999999997423368999999999999999999999886 48999999987665434679999999943
Q ss_pred CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.+. .+++.+.+.+++||++++..
T Consensus 125 s~~------------------------------~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 125 TPA------------------------------PFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CcH------------------------------HHHHHHHHhcccCCEEEEEe
Confidence 110 46777788999999999973
No 168
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.04 E-value=3.6e-10 Score=103.13 Aligned_cols=140 Identities=24% Similarity=0.250 Sum_probs=103.6
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEcCcccccccC-CCceeEEE
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ-DIIEIRQGSWFGKLKDV-EGKLSGVV 271 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~-~~v~~~~gD~~~~l~~~-~~~fDlIv 271 (371)
..+.+|||.|+|-|..++..+++ ....|+.||.++..+++|.-|--..++. ..++++.||..+.++.+ +.+||+||
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 35789999999999999999885 3349999999999999999885444442 25899999998877665 45799999
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-------CcCcHHHHHHHHhc
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-------GEKQCKFLKNYLEN 344 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-------~~~q~~~v~~~l~~ 344 (371)
-+||=....- + -.-.+|.++.++.|++||.++-.++ |.+-...|.+.|++
T Consensus 211 HDPPRfS~Ag------e-----------------LYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 211 HDPPRFSLAG------E-----------------LYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred eCCCccchhh------h-----------------HhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence 9999542111 0 1112455566699999999988775 33345667777775
Q ss_pred cccCCceeEEEEecCCC
Q 017476 345 DSACSFCNVSIVSDFAG 361 (371)
Q Consensus 345 ~~~~gf~~v~~~~Dl~g 361 (371)
.||..+......-|
T Consensus 268 ---vGF~~v~~~~~~~g 281 (287)
T COG2521 268 ---VGFEVVKKVREALG 281 (287)
T ss_pred ---cCceeeeeehhccc
Confidence 78988877765444
No 169
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.03 E-value=2.1e-09 Score=98.73 Aligned_cols=129 Identities=22% Similarity=0.339 Sum_probs=88.3
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---------------------------
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--------------------------- 244 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--------------------------- 244 (371)
+...+..+||+||-+|.+++.+|+.| ....|.|+||++..+..|++|++...
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F-~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a 133 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDF-GPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEA 133 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhh-ccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccc
Confidence 34467789999999999999999998 45689999999999999999986431
Q ss_pred -------CCCcEEEEE-------cCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHH
Q 017476 245 -------LQDIIEIRQ-------GSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLH 310 (371)
Q Consensus 245 -------l~~~v~~~~-------gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~ 310 (371)
+++++.|.. .|+.+ ....+||+|+| | .+-.| .-|--|++| ++.
T Consensus 134 ~~a~t~~~p~n~~f~~~n~vle~~dfl~---~~~~~fDiIlc------------L--SiTkW---IHLNwgD~G---L~~ 190 (288)
T KOG2899|consen 134 DRAFTTDFPDNVWFQKENYVLESDDFLD---MIQPEFDIILC------------L--SITKW---IHLNWGDDG---LRR 190 (288)
T ss_pred cccccccCCcchhcccccEEEecchhhh---hccccccEEEE------------E--Eeeee---EecccccHH---HHH
Confidence 001111111 12221 12357888888 1 11111 123334444 457
Q ss_pred HHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 311 LCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 311 il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
++..+.++|.|||+|++|-.+++....-++.++.
T Consensus 191 ff~kis~ll~pgGiLvvEPQpWksY~kaar~~e~ 224 (288)
T KOG2899|consen 191 FFRKISSLLHPGGILVVEPQPWKSYKKAARRSEK 224 (288)
T ss_pred HHHHHHHhhCcCcEEEEcCCchHHHHHHHHHHHH
Confidence 8899999999999999999888776666665543
No 170
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.02 E-value=2.7e-09 Score=98.78 Aligned_cols=123 Identities=10% Similarity=-0.062 Sum_probs=85.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH------H-----cCCCCcEEEEEcCcccccc--
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ------R-----YGLQDIIEIRQGSWFGKLK-- 261 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~------~-----~gl~~~v~~~~gD~~~~l~-- 261 (371)
++.+||++|||.|.-++.||.. +.+|+|+|+|+.|++.+.+... . .--..+++++++|+++.-.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 4579999999999999999984 6789999999999998865210 0 0012359999999998532
Q ss_pred cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc---------
Q 017476 262 DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE--------- 332 (371)
Q Consensus 262 ~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~--------- 332 (371)
...++||+|+= ...+..++++.+ .+..+.+.+.|+|||.+++..-..
T Consensus 120 ~~~~~fD~VyD------ra~~~Alpp~~R------------------~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf 175 (226)
T PRK13256 120 NNLPVFDIWYD------RGAYIALPNDLR------------------TNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPY 175 (226)
T ss_pred cccCCcCeeee------ehhHhcCCHHHH------------------HHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCC
Confidence 22368999873 222333444332 267778889999999987765211
Q ss_pred -CcHHHHHHHHhc
Q 017476 333 -KQCKFLKNYLEN 344 (371)
Q Consensus 333 -~q~~~v~~~l~~ 344 (371)
-..+++++++..
T Consensus 176 ~v~~~e~~~lf~~ 188 (226)
T PRK13256 176 SVTQAELIKNFSA 188 (226)
T ss_pred cCCHHHHHHhccC
Confidence 134677777763
No 171
>PLN02823 spermine synthase
Probab=99.01 E-value=1.9e-08 Score=98.68 Aligned_cols=153 Identities=14% Similarity=0.169 Sum_probs=101.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEcCcccccccCCCceeEEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG---LQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g---l~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
.+++||.+|+|.|..+..+.+. .+..+|+.||++++.+++|++++..++ -.++++++.+|..+.+....++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 4679999999999999988885 355789999999999999999875432 145899999999888765567899999
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH-HHhcccccCcEEEEEECCc---CcHHHHHHHHhcccc
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN-GTASMLKPGGFFAFETNGE---KQCKFLKNYLENDSA 347 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~-~a~~~LkpgG~lvle~~~~---~q~~~v~~~l~~~~~ 347 (371)
.+.+- +... .|...|. -..+++ .+.+.|+|||++++..... .+.+.+..+++.. .
T Consensus 182 ~D~~d-p~~~-----------~~~~~Ly--------t~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl-~ 240 (336)
T PLN02823 182 GDLAD-PVEG-----------GPCYQLY--------TKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTL-R 240 (336)
T ss_pred ecCCC-cccc-----------Ccchhhc--------cHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHH-H
Confidence 97431 1000 0000011 125666 6789999999999886421 1233333333322 1
Q ss_pred CCceeEEEEec----CCCCceEEEEE
Q 017476 348 CSFCNVSIVSD----FAGIQRFVTGF 369 (371)
Q Consensus 348 ~gf~~v~~~~D----l~g~~R~~~a~ 369 (371)
.-|..+..+.. +.+..-|++|-
T Consensus 241 ~vF~~v~~y~~~vPsf~~~w~f~~aS 266 (336)
T PLN02823 241 QVFKYVVPYTAHVPSFADTWGWVMAS 266 (336)
T ss_pred HhCCCEEEEEeecCCCCCceEEEEEe
Confidence 34777766542 33334555554
No 172
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=7.9e-09 Score=100.79 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=99.5
Q ss_pred ceeeEeeC--CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 160 DLVLSVEE--GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 160 ~~~~~v~~--~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
|..|.++. -.|.||-.+|..- +.+.. ..+.+|+|+.+|.|.+++.+|+. ....|+|+|+||.|++.++
T Consensus 159 G~~f~vD~~Kv~Fsprl~~ER~R--va~~v------~~GE~V~DmFAGVGpfsi~~Ak~--g~~~V~A~diNP~A~~~L~ 228 (341)
T COG2520 159 GCRFKVDVAKVYFSPRLSTERAR--VAELV------KEGETVLDMFAGVGPFSIPIAKK--GRPKVYAIDINPDAVEYLK 228 (341)
T ss_pred CEEEEEchHHeEECCCchHHHHH--HHhhh------cCCCEEEEccCCcccchhhhhhc--CCceEEEEecCHHHHHHHH
Confidence 44555544 4566886665422 11222 13679999999999999999996 3445999999999999999
Q ss_pred HHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476 238 FNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (371)
Q Consensus 238 ~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~ 317 (371)
+|++.|++.+++..++||..+..... +.+|-|++|-|... | .++..|.+
T Consensus 229 eNi~LN~v~~~v~~i~gD~rev~~~~-~~aDrIim~~p~~a-------------~-----------------~fl~~A~~ 277 (341)
T COG2520 229 ENIRLNKVEGRVEPILGDAREVAPEL-GVADRIIMGLPKSA-------------H-----------------EFLPLALE 277 (341)
T ss_pred HHHHhcCccceeeEEeccHHHhhhcc-ccCCEEEeCCCCcc-------------h-----------------hhHHHHHH
Confidence 99999999999999999998765543 78999999876521 1 56777888
Q ss_pred ccccCcEEEEEEC
Q 017476 318 MLKPGGFFAFETN 330 (371)
Q Consensus 318 ~LkpgG~lvle~~ 330 (371)
.+++||++.+...
T Consensus 278 ~~k~~g~iHyy~~ 290 (341)
T COG2520 278 LLKDGGIIHYYEF 290 (341)
T ss_pred HhhcCcEEEEEec
Confidence 9999999887653
No 173
>PRK06202 hypothetical protein; Provisional
Probab=98.97 E-value=4e-09 Score=98.05 Aligned_cols=75 Identities=33% Similarity=0.406 Sum_probs=55.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
++.+|||+|||+|.++..+++.. +++.+|+|+|+|+++++.|+++....+ +++..++... +...+++||+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~-l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDE-LVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEeccc-ccccCCCccEEE
Confidence 45699999999999999888643 345699999999999999998865443 4454444322 222347899999
Q ss_pred EcC
Q 017476 272 SNP 274 (371)
Q Consensus 272 sNP 274 (371)
+|-
T Consensus 135 ~~~ 137 (232)
T PRK06202 135 SNH 137 (232)
T ss_pred ECC
Confidence 974
No 174
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.2e-08 Score=97.97 Aligned_cols=164 Identities=20% Similarity=0.272 Sum_probs=111.4
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHHcCC
Q 017476 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQRYGL 245 (371)
Q Consensus 167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~gl 245 (371)
.|.+++......++-.++ +..++.+|||+|++.|.=+..+|+.... +..|+++|+++.-++..+.|+++.|+
T Consensus 135 ~G~~~vQd~sS~l~a~~L-------~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~ 207 (355)
T COG0144 135 EGLIYVQDEASQLPALVL-------DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV 207 (355)
T ss_pred ceEEEEcCHHHHHHHHHc-------CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC
Confidence 444444444444444333 3345789999999999999999997633 35679999999999999999999999
Q ss_pred CCcEEEEEcCcccccccC--CCceeEEEEcCCCCCCCCcccchhhhcc-cCccccccCCCCcHHH-HHHHHHHHhccccc
Q 017476 246 QDIIEIRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDISGLQVEVGK-HEPRLALDGGVDGLDY-LLHLCNGTASMLKP 321 (371)
Q Consensus 246 ~~~v~~~~gD~~~~l~~~--~~~fDlIvsNPPYi~~~~~~~l~~ev~~-~ep~~aL~gg~dGl~~-~~~il~~a~~~Lkp 321 (371)
.+ +.++..|........ .++||.|+.++|+...+.+..- +++.+ ..+.. -..+.. -.++++.+.+.|||
T Consensus 208 ~n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~-Pd~~~~~~~~~-----i~~l~~lQ~~iL~~a~~~lk~ 280 (355)
T COG0144 208 RN-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRD-PDVKWRRTPED-----IAELAKLQKEILAAALKLLKP 280 (355)
T ss_pred Cc-eEEEecccccccccccccCcCcEEEECCCCCCCcccccC-ccccccCCHHH-----HHHHHHHHHHHHHHHHHhcCC
Confidence 87 888888764322211 2369999999999876655321 22211 11110 011222 24799999999999
Q ss_pred CcEEEEEEC---CcCcHHHHHHHHhc
Q 017476 322 GGFFAFETN---GEKQCKFLKNYLEN 344 (371)
Q Consensus 322 gG~lvle~~---~~~q~~~v~~~l~~ 344 (371)
||.|++.+- .....+.|..++++
T Consensus 281 GG~LVYSTCS~~~eENE~vV~~~L~~ 306 (355)
T COG0144 281 GGVLVYSTCSLTPEENEEVVERFLER 306 (355)
T ss_pred CCEEEEEccCCchhcCHHHHHHHHHh
Confidence 999999773 33455566677765
No 175
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.95 E-value=6.1e-09 Score=107.14 Aligned_cols=167 Identities=23% Similarity=0.243 Sum_probs=108.4
Q ss_pred CcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcC
Q 017476 168 GVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRYG 244 (371)
Q Consensus 168 ~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~---~~~V~gvDis~~al~~A~~n~~~~g 244 (371)
..|.||..++++++.+.. .+..+|.|.+||||.+.+..++.+.. ...++|.|+++....+|+.|+-.+|
T Consensus 167 EfyTP~~v~~liv~~l~~--------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg 238 (489)
T COG0286 167 EFYTPREVSELIVELLDP--------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG 238 (489)
T ss_pred ccCChHHHHHHHHHHcCC--------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence 356799998888887643 12348999999999999988887632 3679999999999999999999999
Q ss_pred CCCcEEEEEcCccccccc----CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccC-CCCcHHHHHHHHHHHhccc
Q 017476 245 LQDIIEIRQGSWFGKLKD----VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG-GVDGLDYLLHLCNGTASML 319 (371)
Q Consensus 245 l~~~v~~~~gD~~~~l~~----~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~g-g~dGl~~~~~il~~a~~~L 319 (371)
+...+....+|-+..... ..++||.|++||||....-...+.... .. .+....+ ..-.-.....+++.+..+|
T Consensus 239 i~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~af~~h~~~~l 316 (489)
T COG0286 239 IEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESE-QD-ERFFFYGVFPTKNSADLAFLQHILYKL 316 (489)
T ss_pred CCccccccccccccCCcccccCCccceeEEEeCCCCCcccccccccccc-cc-ccccccCCCCCCCchHHHHHHHHHHhc
Confidence 874467777776553322 236799999999997332222110000 10 0111111 1111122246777778999
Q ss_pred ccCcEEEEEECC-----cCcHHHHHHHHhc
Q 017476 320 KPGGFFAFETNG-----EKQCKFLKNYLEN 344 (371)
Q Consensus 320 kpgG~lvle~~~-----~~q~~~v~~~l~~ 344 (371)
+|||+..+.+.. ..-...+++.+-+
T Consensus 317 ~~~g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 317 KPGGRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred CCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 999887776531 1134556655553
No 176
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.94 E-value=5.8e-09 Score=100.78 Aligned_cols=107 Identities=22% Similarity=0.238 Sum_probs=81.4
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
..+++.|||+|||+|.+++..|+. ...+|+|||.|.-+ +.|++.+..|++.+.|++++|...+- .-+.+++|+|||
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi-~LP~eKVDiIvS 133 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI-ELPVEKVDIIVS 133 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE-ecCccceeEEee
Confidence 456889999999999999999997 46799999999866 99999999999999999999998664 222479999998
Q ss_pred cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA 326 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv 326 (371)
.++.-.+.|| ..+..++-.--++|+|||.++
T Consensus 134 -----------EWMGy~Ll~E------------sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 134 -----------EWMGYFLLYE------------SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -----------hhhhHHHHHh------------hhhhhhhhhhhhccCCCceEc
Confidence 1222222222 122344444457999999764
No 177
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.94 E-value=1.3e-08 Score=92.98 Aligned_cols=120 Identities=17% Similarity=0.298 Sum_probs=98.4
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (371)
Q Consensus 174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~ 253 (371)
|+--.+++.+++.. .+++.||+|+=||.-++.+|..++++++|+++|+++++.+++.+-.+..|+..+|++++
T Consensus 59 ~d~g~fl~~li~~~-------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~ 131 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLL-------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIE 131 (237)
T ss_pred hHHHHHHHHHHHHh-------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeee
Confidence 44455666666655 46799999999999999999999889999999999999999999999999999999999
Q ss_pred cCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 254 GSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 254 gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
|+..+.+..+ .+.||+++.+ + --+.|....+.+.++|++||++++.
T Consensus 132 g~a~esLd~l~~~~~~~tfDfaFvD------------------a-----------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 132 GPALESLDELLADGESGTFDFAFVD------------------A-----------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred cchhhhHHHHHhcCCCCceeEEEEc------------------c-----------chHHHHHHHHHHHhhcccccEEEEe
Confidence 9988765432 4689999972 1 0234456777888999999999985
Q ss_pred E
Q 017476 329 T 329 (371)
Q Consensus 329 ~ 329 (371)
-
T Consensus 183 N 183 (237)
T KOG1663|consen 183 N 183 (237)
T ss_pred c
Confidence 4
No 178
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.93 E-value=1.1e-08 Score=94.83 Aligned_cols=127 Identities=21% Similarity=0.318 Sum_probs=98.8
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCceeEEEEcC
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSGVVSNP 274 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fDlIvsNP 274 (371)
..+||||||.|.+.+.+|+.. |+..++|||+....+..|.+.+.+.++. ++.++++|+.+.+... +++.|-|..|-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 489999999999999999985 9999999999999999999999999997 4999999987655433 35899999997
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHH-HHHHHh
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKF-LKNYLE 343 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~-v~~~l~ 343 (371)
|=-+... +|+-+.- ....+++...+.|+|||.+.+-++.....+. +...+.
T Consensus 128 PDPWpKk---------RH~KRRl---------~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~ 179 (227)
T COG0220 128 PDPWPKK---------RHHKRRL---------TQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLE 179 (227)
T ss_pred CCCCCCc---------ccccccc---------CCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHh
Confidence 7444332 2322211 1237888999999999999999965555555 344433
No 179
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.92 E-value=1.3e-09 Score=99.23 Aligned_cols=123 Identities=24% Similarity=0.317 Sum_probs=85.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEcC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSNP 274 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsNP 274 (371)
-.++||||||||..+..+-... .+++|||||..|++.|.+. |+-+ .+.+++....++ ...++||+|++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~A-- 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVA-- 194 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhh--
Confidence 4689999999999999987763 6899999999999998764 3322 344444433332 22478999998
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---C------------cCcHHHHH
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---G------------EKQCKFLK 339 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---~------------~~q~~~v~ 339 (371)
.+|.-| +..+..++..+...|+|||.+.|.+- + ......|+
T Consensus 195 ------------aDVl~Y------------lG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr 250 (287)
T COG4976 195 ------------ADVLPY------------LGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVR 250 (287)
T ss_pred ------------hhHHHh------------hcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHH
Confidence 233333 33455788889999999999999652 1 11234577
Q ss_pred HHHhccccCCceeEEEE
Q 017476 340 NYLENDSACSFCNVSIV 356 (371)
Q Consensus 340 ~~l~~~~~~gf~~v~~~ 356 (371)
+.++. .||.-|++.
T Consensus 251 ~~l~~---~Gl~~i~~~ 264 (287)
T COG4976 251 ALLAA---SGLEVIAIE 264 (287)
T ss_pred HHHHh---cCceEEEee
Confidence 77775 788776654
No 180
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.90 E-value=1.2e-08 Score=103.68 Aligned_cols=104 Identities=23% Similarity=0.307 Sum_probs=74.5
Q ss_pred CCeEEEECCcccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 196 DGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~---~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
+..|+|+|||+|-+....++. .+...+|+|||.|+.|....++.++.+++.++|+++++|+.+.-. ..++|+|||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--pekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--PEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--SS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--CCceeEEEE
Confidence 568999999999998766653 223569999999999998888877889999999999999976433 369999999
Q ss_pred cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEE
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFF 325 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~l 325 (371)
.+......+| ...+.+..+.+.|||||.+
T Consensus 265 -----------ElLGsfg~nE-------------l~pE~Lda~~rfLkp~Gi~ 293 (448)
T PF05185_consen 265 -----------ELLGSFGDNE-------------LSPECLDAADRFLKPDGIM 293 (448)
T ss_dssp --------------BTTBTTT-------------SHHHHHHHGGGGEEEEEEE
T ss_pred -----------eccCCccccc-------------cCHHHHHHHHhhcCCCCEE
Confidence 1222222222 1225678888999999975
No 181
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.89 E-value=6.7e-09 Score=92.54 Aligned_cols=128 Identities=17% Similarity=0.274 Sum_probs=79.4
Q ss_pred chHHHHHHHHHHHhhh--cCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcE
Q 017476 174 PETELMVDLVSDVLVR--DNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--LQDII 249 (371)
Q Consensus 174 p~te~lv~~~~~~~~~--~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--l~~~v 249 (371)
+.+..|.+++...... ......+.+|||||||+|..++.++... ...+|+..|.++ .++.++.|++.|+ ...++
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccc
Confidence 3455666666653200 1123467899999999999999999963 567999999999 9999999999987 56679
Q ss_pred EEEEcCcccccc--c-CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEE
Q 017476 250 EIRQGSWFGKLK--D-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFA 326 (371)
Q Consensus 250 ~~~~gD~~~~l~--~-~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lv 326 (371)
.+..-||.+... . ...+||+|++ .++. |.+ +.+..+++.+.++|+++|.++
T Consensus 100 ~v~~L~Wg~~~~~~~~~~~~~D~Ila--------------sDv~-Y~~-----------~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 100 SVRPLDWGDELDSDLLEPHSFDVILA--------------SDVL-YDE-----------ELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp EEEE--TTS-HHHHHHS-SSBSEEEE--------------ES---S-G-----------GGHHHHHHHHHHHBTT-TTEE
T ss_pred cCcEEEecCcccccccccccCCEEEE--------------eccc-chH-----------HHHHHHHHHHHHHhCCCCEEE
Confidence 999999977431 1 1358999998 2232 222 234577788889999999877
Q ss_pred EEE
Q 017476 327 FET 329 (371)
Q Consensus 327 le~ 329 (371)
+-.
T Consensus 154 ~~~ 156 (173)
T PF10294_consen 154 LAY 156 (173)
T ss_dssp EEE
T ss_pred EEe
Confidence 766
No 182
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.89 E-value=5e-09 Score=96.80 Aligned_cols=126 Identities=24% Similarity=0.234 Sum_probs=85.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH-HHHHcC----------CCCcEEEEEcCcccccccC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF-NAQRYG----------LQDIIEIRQGSWFGKLKDV 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~-n~~~~g----------l~~~v~~~~gD~~~~l~~~ 263 (371)
.+.+||.+|||.|.-+..||.. +.+|+|+|+|+.|++.|.+ |..... -.++|+++++|+|+.-...
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 4569999999999999999984 6799999999999999843 221010 1235899999999854443
Q ss_pred CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC--------C---c
Q 017476 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN--------G---E 332 (371)
Q Consensus 264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~--------~---~ 332 (371)
.++||+|+= ...+..++++.+. +..+.+.++|+|||.+++.+- | .
T Consensus 114 ~g~fD~iyD------r~~l~Alpp~~R~------------------~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~ 169 (218)
T PF05724_consen 114 VGKFDLIYD------RTFLCALPPEMRE------------------RYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS 169 (218)
T ss_dssp HHSEEEEEE------CSSTTTS-GGGHH------------------HHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred cCCceEEEE------ecccccCCHHHHH------------------HHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence 468999984 3344455555432 677788899999999544321 1 1
Q ss_pred CcHHHHHHHHhccccCCce
Q 017476 333 KQCKFLKNYLENDSACSFC 351 (371)
Q Consensus 333 ~q~~~v~~~l~~~~~~gf~ 351 (371)
-..+++.+++. .+|.
T Consensus 170 v~~~ev~~l~~----~~f~ 184 (218)
T PF05724_consen 170 VTEEEVRELFG----PGFE 184 (218)
T ss_dssp --HHHHHHHHT----TTEE
T ss_pred CCHHHHHHHhc----CCcE
Confidence 23567788886 4564
No 183
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=6.2e-08 Score=90.48 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=106.5
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGV 270 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlI 270 (371)
+..++.+|++-|||||.++.++++..+|.++++..|....-.+.|++-.+.+|+.+++++..-|....-... ...+|.|
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceE
Confidence 455788999999999999999999999999999999999999999999999999999999999986532222 4689999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc-EEEEEECCcCcHHHHHHHHhccccCC
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG-FFAFETNGEKQCKFLKNYLENDSACS 349 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG-~lvle~~~~~q~~~v~~~l~~~~~~g 349 (371)
+.+-|-. . ..+-.+.++||.+| +++--.+...|.+...+.+.+ .|
T Consensus 182 FLDlPaP-----------------w--------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~---~g 227 (314)
T KOG2915|consen 182 FLDLPAP-----------------W--------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRS---LG 227 (314)
T ss_pred EEcCCCh-----------------h--------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHh---CC
Confidence 9975531 1 22334455788666 665555566777777777764 78
Q ss_pred ceeEEEEecCC
Q 017476 350 FCNVSIVSDFA 360 (371)
Q Consensus 350 f~~v~~~~Dl~ 360 (371)
|.+|+++.++-
T Consensus 228 f~~i~~vEv~~ 238 (314)
T KOG2915|consen 228 FIEIETVEVLL 238 (314)
T ss_pred CceEEEEEeeh
Confidence 99999988776
No 184
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.86 E-value=1.2e-08 Score=96.38 Aligned_cols=86 Identities=19% Similarity=0.297 Sum_probs=66.4
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (371)
Q Consensus 179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~ 258 (371)
+++.+++.+ ...++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++.. ..+++++++|+.+
T Consensus 17 i~~~i~~~~----~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~ 86 (253)
T TIGR00755 17 VIQKIVEAA----NVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHhc----CCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhc
Confidence 344444444 23346799999999999999999974 4699999999999999988743 2469999999976
Q ss_pred ccccCCCcee---EEEEcCCCC
Q 017476 259 KLKDVEGKLS---GVVSNPPYI 277 (371)
Q Consensus 259 ~l~~~~~~fD---lIvsNPPYi 277 (371)
... ..+| .|++|+||.
T Consensus 87 ~~~---~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 87 VDL---PDFPKQLKVVSNLPYN 105 (253)
T ss_pred CCh---hHcCCcceEEEcCChh
Confidence 422 2466 999999985
No 185
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.85 E-value=1.1e-08 Score=91.96 Aligned_cols=119 Identities=20% Similarity=0.207 Sum_probs=85.3
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEcCcccccccCCCceeEEEEcCC
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE-IRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~-~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
..+|++|||+|..--..-. .|..+|+++|.++.|-+.|.+.++.+.-. ++. |+.++..+...-.++++|.||+-
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l~d~s~DtVV~T-- 152 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQLADGSYDTVVCT-- 152 (252)
T ss_pred cceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcccccCCeeeEEEE--
Confidence 4689999999998655433 27889999999999999999999887544 365 88888754321236899999981
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
+.|.. .+...+.+++..++|+|||++++.-++..+......++.+
T Consensus 153 --------------------lvLCS----ve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 153 --------------------LVLCS----VEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQ 197 (252)
T ss_pred --------------------EEEec----cCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHH
Confidence 11111 1234478888899999999987755466666665555543
No 186
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.83 E-value=1.8e-08 Score=90.30 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=57.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN 273 (371)
++.+|||||||.|.+...|.+. .+..++|||++++.+..+.++ | +.++++|+.+.+.. .+++||.||.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCccEEehH
Confidence 4569999999999999999886 578999999999988766553 4 77999999877653 36799999983
No 187
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.81 E-value=5.7e-08 Score=93.26 Aligned_cols=142 Identities=21% Similarity=0.317 Sum_probs=103.2
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEE
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVS 272 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvs 272 (371)
.++.+|||+|+|.|.-+..++..+...+.|+++|+++.-+...+.|+++.|..+ +.+...|........ ...||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccchhhc
Confidence 356789999999999999999988667899999999999999999999999876 888878876543221 246999999
Q ss_pred cCCCCCCCCcccchhhhcccCccccccC-CCC--cHH-HHHHHHHHHhccc----ccCcEEEEEEC---CcCcHHHHHHH
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDG-GVD--GLD-YLLHLCNGTASML----KPGGFFAFETN---GEKQCKFLKNY 341 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~g-g~d--Gl~-~~~~il~~a~~~L----kpgG~lvle~~---~~~q~~~v~~~ 341 (371)
++|......+.. .|.....- ..+ .+. .=+++++.+.+.+ ||||++++.+- .....+.|..+
T Consensus 163 DaPCSg~G~i~r--------~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~f 234 (283)
T PF01189_consen 163 DAPCSGLGTIRR--------NPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKF 234 (283)
T ss_dssp ECSCCCGGGTTT--------CTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHH
T ss_pred CCCccchhhhhh--------ccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHH
Confidence 999976544332 22211111 111 122 2247999999999 99999999873 23344556666
Q ss_pred Hhc
Q 017476 342 LEN 344 (371)
Q Consensus 342 l~~ 344 (371)
+++
T Consensus 235 l~~ 237 (283)
T PF01189_consen 235 LKR 237 (283)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 188
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.81 E-value=1.1e-08 Score=92.67 Aligned_cols=99 Identities=26% Similarity=0.359 Sum_probs=80.2
Q ss_pred cccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476 171 IPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (371)
Q Consensus 171 iPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~ 250 (371)
.|.++.+.+...+.... ....|+|..||.|..++..|.. ...|+++|++|.-++.|+.|++-+|++++|.
T Consensus 77 Tpe~ia~~iA~~v~~~~-------~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rIt 146 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACM-------NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRIT 146 (263)
T ss_pred ccHHHHHHHHHHHHHhc-------CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeE
Confidence 35666677776665543 2458999999999999999886 3689999999999999999999999999999
Q ss_pred EEEcCcccccccC---CCceeEEEEcCCCCCC
Q 017476 251 IRQGSWFGKLKDV---EGKLSGVVSNPPYIPS 279 (371)
Q Consensus 251 ~~~gD~~~~l~~~---~~~fDlIvsNPPYi~~ 279 (371)
|++||+++....+ ...+|+|+.-||+...
T Consensus 147 FI~GD~ld~~~~lq~~K~~~~~vf~sppwggp 178 (263)
T KOG2730|consen 147 FICGDFLDLASKLKADKIKYDCVFLSPPWGGP 178 (263)
T ss_pred EEechHHHHHHHHhhhhheeeeeecCCCCCCc
Confidence 9999998754322 3457899999998643
No 189
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.80 E-value=2.5e-07 Score=87.60 Aligned_cols=149 Identities=21% Similarity=0.293 Sum_probs=111.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc--cccCCCceeEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSK--GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDVEGKLSGV 270 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~--~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~--l~~~~~~fDlI 270 (371)
.+-+|+|+.||.|...+.+.... +. ..|.-.|.|+..++..++-++..|+++.++|.++|+++. +....-+.+++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~-~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKH-PERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhC-CCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46799999999999888888775 54 689999999999999999999999999779999999885 23333456776
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cHH-------------
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QCK------------- 336 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~~------------- 336 (371)
|.-==| ..-|. -+.++..+......+.|||++++....+. |.+
T Consensus 214 iVsGL~--------------ElF~D---------n~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~ 270 (311)
T PF12147_consen 214 IVSGLY--------------ELFPD---------NDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGK 270 (311)
T ss_pred EEecch--------------hhCCc---------HHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCC
Confidence 651110 11111 24566788899999999999999653322 333
Q ss_pred ----------HHHHHHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476 337 ----------FLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 337 ----------~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~ 370 (371)
++.+++++ +||..++..-|-.|+.-|.+|+|
T Consensus 271 ~WvMRrRsq~EmD~Lv~~---aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 271 AWVMRRRSQAEMDQLVEA---AGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred ceEEEecCHHHHHHHHHH---cCCchhhheeccCCceEEEeecC
Confidence 34444443 78999999999999988888865
No 190
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.80 E-value=5.8e-08 Score=87.82 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-cCCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-DVEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-~~~~~fDlIvsN 273 (371)
++.+|||+|||+|.++..+++. ....++|+|+++++++.|+++ +++++++|+.+.+. ...++||+|++|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~--~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~ 82 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE--KQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILS 82 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc--cCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEh
Confidence 3568999999999999988875 356789999999999888642 26788888865332 224689999998
Q ss_pred CCCC
Q 017476 274 PPYI 277 (371)
Q Consensus 274 PPYi 277 (371)
..+.
T Consensus 83 ~~l~ 86 (194)
T TIGR02081 83 QTLQ 86 (194)
T ss_pred hHhH
Confidence 6653
No 191
>PRK04148 hypothetical protein; Provisional
Probab=98.80 E-value=2.5e-08 Score=84.80 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=63.6
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEECCcccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~-~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
+.+++.+.+ ...++.+++|+|||+|. ++..|++. +..|+|+|+++.+++.|+++ + ++++.+|++
T Consensus 4 i~~~l~~~~----~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf 68 (134)
T PRK04148 4 IAEFIAENY----EKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLF 68 (134)
T ss_pred HHHHHHHhc----ccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCC
Confidence 455555544 22245789999999996 88888863 57999999999998888776 2 789999999
Q ss_pred cccccCCCceeEEEE-cCC
Q 017476 258 GKLKDVEGKLSGVVS-NPP 275 (371)
Q Consensus 258 ~~l~~~~~~fDlIvs-NPP 275 (371)
++-..+-+.+|+|.+ +||
T Consensus 69 ~p~~~~y~~a~liysirpp 87 (134)
T PRK04148 69 NPNLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CCCHHHHhcCCEEEEeCCC
Confidence 976665678999998 555
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.79 E-value=4.4e-07 Score=81.67 Aligned_cols=133 Identities=20% Similarity=0.136 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhhcCCCC-CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 017476 176 TELMVDLVSDVLVRDNDGL-RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (371)
Q Consensus 176 te~lv~~~~~~~~~~~~~~-~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g 254 (371)
.+.+..++++-+....... ...+++|+|+|.|.-++.+|-.+ |+.+++.+|.+..-+...+.-+...|+++ ++++++
T Consensus 28 ~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~ 105 (184)
T PF02527_consen 28 EEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVING 105 (184)
T ss_dssp HHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES
T ss_pred HHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEe
Confidence 3445556665542111111 12279999999999999998875 89999999999999999999999999985 999999
Q ss_pred CcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCc
Q 017476 255 SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQ 334 (371)
Q Consensus 255 D~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q 334 (371)
.+.+ ....++||+|++ ..+ ..+..+++.+..+|++||.+++-- |...
T Consensus 106 R~E~--~~~~~~fd~v~a--------------RAv----------------~~l~~l~~~~~~~l~~~G~~l~~K-G~~~ 152 (184)
T PF02527_consen 106 RAEE--PEYRESFDVVTA--------------RAV----------------APLDKLLELARPLLKPGGRLLAYK-GPDA 152 (184)
T ss_dssp -HHH--TTTTT-EEEEEE--------------ESS----------------SSHHHHHHHHGGGEEEEEEEEEEE-SS--
T ss_pred eecc--cccCCCccEEEe--------------ehh----------------cCHHHHHHHHHHhcCCCCEEEEEc-CCCh
Confidence 9876 223478999998 111 123478888899999999999998 4455
Q ss_pred HHHHHHHHh
Q 017476 335 CKFLKNYLE 343 (371)
Q Consensus 335 ~~~v~~~l~ 343 (371)
.+++.+.-.
T Consensus 153 ~~El~~~~~ 161 (184)
T PF02527_consen 153 EEELEEAKK 161 (184)
T ss_dssp HHHHHTHHH
T ss_pred HHHHHHHHh
Confidence 555554433
No 193
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.78 E-value=6e-08 Score=90.59 Aligned_cols=98 Identities=26% Similarity=0.297 Sum_probs=75.5
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
...+|+|+|+|+|.++..+++++ |+.+++..|+ |..++.+++ .+|++++.||++++++ . +|+++..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P---~-~D~~~l~- 165 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLP---V-ADVYLLR- 165 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCS---S-ESEEEEE-
T ss_pred CccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhc---c-ccceeee-
Confidence 45689999999999999999996 9999999999 889888887 5789999999996654 3 9999871
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccC--cEEEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG--GFFAFET 329 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkpg--G~lvle~ 329 (371)
..++.++ -+....+++++++.|+|| |.|++.-
T Consensus 166 -----~vLh~~~------------------d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 166 -----HVLHDWS------------------DEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp -----SSGGGS-------------------HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred -----hhhhhcc------------------hHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 1111111 244568999999999999 9887743
No 194
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.73 E-value=2.1e-07 Score=87.64 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=93.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEEcCcccccccCCC-ceeEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL---QDIIEIRQGSWFGKLKDVEG-KLSGV 270 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl---~~~v~~~~gD~~~~l~~~~~-~fDlI 270 (371)
++++||=+|-|.|..+..+.+. .+..+|+.||+++..++.|++-...... .+|++++.+|....+....+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 5779999999999999999875 3467999999999999999997654322 35899999999887776556 89999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCC
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACS 349 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~g 349 (371)
+.+.+- +.... ..|. -+.+++.+.+.|+|||++++..+. ..+.+.+..+.+.. ..-
T Consensus 155 i~D~~d-p~~~~-------------~~l~--------t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl-~~~ 211 (246)
T PF01564_consen 155 IVDLTD-PDGPA-------------PNLF--------TREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTL-RSV 211 (246)
T ss_dssp EEESSS-TTSCG-------------GGGS--------SHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHH-HTT
T ss_pred EEeCCC-CCCCc-------------cccc--------CHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHH-HHh
Confidence 997553 11110 0011 236888889999999999997632 22334444433322 234
Q ss_pred ceeEEE
Q 017476 350 FCNVSI 355 (371)
Q Consensus 350 f~~v~~ 355 (371)
|..+..
T Consensus 212 F~~v~~ 217 (246)
T PF01564_consen 212 FPQVKP 217 (246)
T ss_dssp SSEEEE
T ss_pred CCceEE
Confidence 655544
No 195
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.70 E-value=1.6e-07 Score=97.16 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=102.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsN 273 (371)
....+||+|||.|.+.+.+|... |+..++|+|++...+..|.+.+...++.| +.++.+|+...... ..+++|.|..|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEE
Confidence 35689999999999999999985 99999999999999999999888888875 88998886321111 13679999999
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNV 353 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v 353 (371)
-|=.+... +|.-+.- . -..+++...+.|+|||.+.+-++.....+.+...+.+. ++|..+
T Consensus 425 FPDPWpKk---------rh~krRl-~--------~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~--~~f~~~ 484 (506)
T PRK01544 425 FPDPWIKN---------KQKKKRI-F--------NKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQN--GNFEII 484 (506)
T ss_pred CCCCCCCC---------CCccccc-c--------CHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhC--CCeEec
Confidence 77544322 2211111 1 12688888999999999999997666677777777753 457544
No 196
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.69 E-value=4.6e-07 Score=82.91 Aligned_cols=119 Identities=27% Similarity=0.403 Sum_probs=89.3
Q ss_pred EEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCC
Q 017476 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (371)
Q Consensus 199 VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~ 278 (371)
|+|+||--|.+.+.|.+. +...+++++|+++..++.|++|++.+|+.++++++.||-++.+.. .+..|.||.
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-~e~~d~ivI------ 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-GEDVDTIVI------ 72 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-GG---EEEE------
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-CCCCCEEEE------
Confidence 689999999999999997 455689999999999999999999999999999999999888765 123787775
Q ss_pred CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476 279 SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN 352 (371)
Q Consensus 279 ~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~ 352 (371)
..+ |-..+..|++.....++....|++..+ .+...++++|.+ .||.-
T Consensus 73 ----AGM------------------GG~lI~~ILe~~~~~~~~~~~lILqP~--~~~~~LR~~L~~---~gf~I 119 (205)
T PF04816_consen 73 ----AGM------------------GGELIIEILEAGPEKLSSAKRLILQPN--THAYELRRWLYE---NGFEI 119 (205)
T ss_dssp ----EEE-------------------HHHHHHHHHHTGGGGTT--EEEEEES--S-HHHHHHHHHH---TTEEE
T ss_pred ----ecC------------------CHHHHHHHHHhhHHHhccCCeEEEeCC--CChHHHHHHHHH---CCCEE
Confidence 121 234577899999888887778888773 678899999996 67854
No 197
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=98.65 E-value=8.7e-07 Score=84.42 Aligned_cols=204 Identities=16% Similarity=0.201 Sum_probs=129.7
Q ss_pred ceeeEeeCCccccc-chHHHHHHHHHHHhhhcCCCCCCC--eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Q 017476 160 DLVLSVEEGVFIPR-PETELMVDLVSDVLVRDNDGLRDG--FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVA 236 (371)
Q Consensus 160 ~~~~~v~~~vliPr-p~te~lv~~~~~~~~~~~~~~~~~--~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A 236 (371)
++...+.++.|+|+ |.-.-++.++-+.+ ...+..++. +=+|||+|.-++--.+.... .++..+|+|+++..+..|
T Consensus 65 gl~veiP~grLcPtVPnR~nYihwI~DLL-ss~q~~k~~i~~GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a 142 (419)
T KOG2912|consen 65 GLSVEIPLGRLCPTVPNRLNYIHWIEDLL-SSQQSDKSTIRRGIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYA 142 (419)
T ss_pred CceEecCccccCCCCccchhhHHHHHHHh-hcccCCCcceeeeeeccCchhhhHHhhhchh-ccceeeeeeccccccchh
Confidence 67888899999998 77777777877777 333222222 24899999998876665543 568999999999999999
Q ss_pred HHHHHHcCCCCcEEEEEcCccccc-----cc-CCCceeEEEEcCCCCCCCCcccc--hhhhcccCccccccCCCCc----
Q 017476 237 AFNAQRYGLQDIIEIRQGSWFGKL-----KD-VEGKLSGVVSNPPYIPSDDISGL--QVEVGKHEPRLALDGGVDG---- 304 (371)
Q Consensus 237 ~~n~~~~gl~~~v~~~~gD~~~~l-----~~-~~~~fDlIvsNPPYi~~~~~~~l--~~ev~~~ep~~aL~gg~dG---- 304 (371)
..|+..+++..++.+++.+-.+.+ .. .+..||+..|||||.....-... ....++--|..+-.||...
T Consensus 143 ~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~e 222 (419)
T KOG2912|consen 143 KSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVSE 222 (419)
T ss_pred hccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccchhHHHhh
Confidence 999999999988888887432211 11 13469999999999865221111 1122234455555555321
Q ss_pred ---HHHHHHHHHHHhcccccCcEEEEEECCc-CcHHHHHHHHhccccCCceeEEEEec-CCCCceEEEEE
Q 017476 305 ---LDYLLHLCNGTASMLKPGGFFAFETNGE-KQCKFLKNYLENDSACSFCNVSIVSD-FAGIQRFVTGF 369 (371)
Q Consensus 305 ---l~~~~~il~~a~~~LkpgG~lvle~~~~-~q~~~v~~~l~~~~~~gf~~v~~~~D-l~g~~R~~~a~ 369 (371)
..+..+|+.... .|+.+=.++-.+-|. .....+.+-|.+ -|-..|.+..= .....|+.+|+
T Consensus 223 ggev~fvnRiitds~-~lr~~IrwYT~MlGKKsslk~l~~kL~e---~gv~kv~itel~qGkTkRW~LaW 288 (419)
T KOG2912|consen 223 GGEVSFVNRIITDSF-VLRKRIRWYTCMLGKKSSLKPLISKLRE---QGVTKVKITELVQGKTKRWGLAW 288 (419)
T ss_pred ccHHHHHHHHHHHHH-HhhhcceEEeeecccccccHHHHHHHHH---cCCceEEEEEeeccccceeeEEe
Confidence 344456665443 345554555544332 244555666654 34556666543 44478888876
No 198
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.65 E-value=7.9e-07 Score=80.78 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=96.9
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-------CCCceeEE
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-------VEGKLSGV 270 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-------~~~~fDlI 270 (371)
+|||||||||..+..+|+.+ |..+-.-.|.++..+.-.+..+...++++-..-+.-|+.+.... ..+.||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 59999999999999999998 88899999999999888888887777765434445554443111 13589999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC--------------------
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-------------------- 330 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-------------------- 330 (371)
+| ..+....| ......+++.+.+.|++||.|++.-+
T Consensus 107 ~~--------------~N~lHI~p----------~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr 162 (204)
T PF06080_consen 107 FC--------------INMLHISP----------WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLR 162 (204)
T ss_pred ee--------------hhHHHhcC----------HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHh
Confidence 98 11112222 24456899999999999999999432
Q ss_pred ------CcCcHHHHHHHHhccccCCceeEEEEecCCCCceE
Q 017476 331 ------GEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRF 365 (371)
Q Consensus 331 ------~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~ 365 (371)
|.+..+.|.++..+ .|+.-++.+.-.+++.-+
T Consensus 163 ~rdp~~GiRD~e~v~~lA~~---~GL~l~~~~~MPANN~~L 200 (204)
T PF06080_consen 163 SRDPEWGIRDIEDVEALAAA---HGLELEEDIDMPANNLLL 200 (204)
T ss_pred cCCCCcCccCHHHHHHHHHH---CCCccCcccccCCCCeEE
Confidence 44445555555553 567666665555544333
No 199
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.64 E-value=1.5e-07 Score=90.11 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=67.5
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
....++.|||+|||+|.++...|+. ...+|++||.|. |.+.|++-++.|++.+||.++.|...+ ++ +.++.|+||
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEd-ie-LPEk~DviI 248 (517)
T KOG1500|consen 174 SDFQDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIED-IE-LPEKVDVII 248 (517)
T ss_pred cccCCcEEEEecCCccHHHHHHHHh--CcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccc-cc-CchhccEEE
Confidence 4567889999999999999999986 567999999976 779999999999999999999998855 32 347999999
Q ss_pred EcCC
Q 017476 272 SNPP 275 (371)
Q Consensus 272 sNPP 275 (371)
+-|-
T Consensus 249 SEPM 252 (517)
T KOG1500|consen 249 SEPM 252 (517)
T ss_pred eccc
Confidence 9653
No 200
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.63 E-value=1.3e-07 Score=86.51 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=86.5
Q ss_pred cccee-eEeeCCccccc-chHHHHHHHHHHHhhhcCCC--CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 017476 158 WRDLV-LSVEEGVFIPR-PETELMVDLVSDVLVRDNDG--LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA 233 (371)
Q Consensus 158 f~~~~-~~v~~~vliPr-p~te~lv~~~~~~~~~~~~~--~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al 233 (371)
||++. ..+.++.|-|- |....++..+.+.+...... .+..++||+|+|.-|+--.+..+. =+++.+|.|+++.++
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl 115 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSL 115 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCccccccccccee-ecceeecCccCHHHH
Confidence 34444 45667777764 77777777777777432222 245689999999988755444331 268999999999999
Q ss_pred HHHHHHHHHc-CCCCcEEEEEcC----cccccccCCCceeEEEEcCCCCCC
Q 017476 234 AVAAFNAQRY-GLQDIIEIRQGS----WFGKLKDVEGKLSGVVSNPPYIPS 279 (371)
Q Consensus 234 ~~A~~n~~~~-gl~~~v~~~~gD----~~~~l~~~~~~fDlIvsNPPYi~~ 279 (371)
+.|+.++..| +++..|+++... .+..+....++||+.+|||||+.+
T Consensus 116 ~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 116 SSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred HHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchh
Confidence 9999999988 787778777543 333333345799999999999865
No 201
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.60 E-value=1.4e-07 Score=90.74 Aligned_cols=92 Identities=28% Similarity=0.380 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
.|++.+++.+ ...++..++|.+||.|..+..+++.++++++|+|+|.+++|++.|++++.. .++++++++|+.
T Consensus 6 Vll~Evl~~L----~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~ 78 (296)
T PRK00050 6 VLLDEVVDAL----AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFS 78 (296)
T ss_pred ccHHHHHHhh----CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHH
Confidence 4566666666 233467999999999999999999874578999999999999999988754 357999999987
Q ss_pred cccccCC---CceeEEEEcCCC
Q 017476 258 GKLKDVE---GKLSGVVSNPPY 276 (371)
Q Consensus 258 ~~l~~~~---~~fDlIvsNPPY 276 (371)
+...... ..+|+|+.|.=+
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCc
Confidence 6432222 279999998654
No 202
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.59 E-value=4.6e-07 Score=88.76 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=81.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC---------CCCcEEEEEcCcccc-----c
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG---------LQDIIEIRQGSWFGK-----L 260 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g---------l~~~v~~~~gD~~~~-----l 260 (371)
++.+|||||||-|.-..-.... .-..++|+|++..+++.|++..+... ..-...++.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 5679999999999877776664 45799999999999999999883211 112367889988753 1
Q ss_pred ccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHH
Q 017476 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKN 340 (371)
Q Consensus 261 ~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~ 340 (371)
.....+||+|-|- +--|.++. -.+..+.++..+...|+|||+++..+. .++.+..
T Consensus 140 ~~~~~~FDvVScQ------------------FalHY~Fe----se~~ar~~l~Nvs~~Lk~GG~FIgT~~---d~~~i~~ 194 (331)
T PF03291_consen 140 PPRSRKFDVVSCQ------------------FALHYAFE----SEEKARQFLKNVSSLLKPGGYFIGTTP---DSDEIVK 194 (331)
T ss_dssp SSTTS-EEEEEEE------------------S-GGGGGS----SHHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHHC
T ss_pred cccCCCcceeehH------------------HHHHHhcC----CHHHHHHHHHHHHHhcCCCCEEEEEec---CHHHHHH
Confidence 2212589999982 11122221 145667899999999999999999994 2444544
Q ss_pred HHhc
Q 017476 341 YLEN 344 (371)
Q Consensus 341 ~l~~ 344 (371)
.+++
T Consensus 195 ~l~~ 198 (331)
T PF03291_consen 195 RLRE 198 (331)
T ss_dssp CHHC
T ss_pred HHHh
Confidence 4443
No 203
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=3.3e-07 Score=86.33 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=68.0
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc
Q 017476 180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259 (371)
Q Consensus 180 v~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~ 259 (371)
++.+.+.. +..++.+|||+|+|.|+++..+++. ..+|+|+|+++..++..++... ..++++++++|+.+.
T Consensus 19 ~~kIv~~a----~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~ 88 (259)
T COG0030 19 IDKIVEAA----NISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHhc----CCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcC
Confidence 44444443 3334679999999999999999996 4689999999999999888765 335699999999874
Q ss_pred cccCCCceeEEEEcCCCCC
Q 017476 260 LKDVEGKLSGVVSNPPYIP 278 (371)
Q Consensus 260 l~~~~~~fDlIvsNPPYi~ 278 (371)
-.....+++.||+|.||.-
T Consensus 89 d~~~l~~~~~vVaNlPY~I 107 (259)
T COG0030 89 DFPSLAQPYKVVANLPYNI 107 (259)
T ss_pred cchhhcCCCEEEEcCCCcc
Confidence 3210016899999999963
No 204
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.58 E-value=4.4e-07 Score=82.48 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEECCcccH----HHHHHHHHhC---C-CcEEEEEeCCHHHHHHHHHHH--------
Q 017476 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGA----IAIGIARVLG---S-KGSIIAVDLNPLAAAVAAFNA-------- 240 (371)
Q Consensus 177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~----~al~la~~~~---~-~~~V~gvDis~~al~~A~~n~-------- 240 (371)
+.+.+.++..+........+-+|+..||+||- +++.+..... + ..+|+|+|+|+.+++.|++-.
T Consensus 13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~ 92 (196)
T PF01739_consen 13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRG 92 (196)
T ss_dssp HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTT
T ss_pred HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhh
Confidence 55666666322122222245699999999994 4554444211 1 469999999999999997621
Q ss_pred ------HHc-----C--------CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476 241 ------QRY-----G--------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG 301 (371)
Q Consensus 241 ------~~~-----g--------l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg 301 (371)
+++ + +.++|+|.+.|+.+. ....+.||+|+|. +.+-.++.
T Consensus 93 ~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~-~~~~~~fD~I~CR------NVlIYF~~-------------- 151 (196)
T PF01739_consen 93 LPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP-DPPFGRFDLIFCR------NVLIYFDP-------------- 151 (196)
T ss_dssp S-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S-------EEEEEE-------SSGGGS-H--------------
T ss_pred hHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC-CcccCCccEEEec------CEEEEeCH--------------
Confidence 111 0 124689999999882 2235799999992 22222222
Q ss_pred CCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 302 VDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 302 ~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+.-..+++...+.|+|||+|++-+
T Consensus 152 ----~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 152 ----ETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp ----HHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred ----HHHHHHHHHHHHHcCCCCEEEEec
Confidence 334589999999999999999977
No 205
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.58 E-value=3.1e-07 Score=85.92 Aligned_cols=91 Identities=20% Similarity=0.354 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
.+++.+.+.. ...++..|||+|-|||.++..+... +.+|+|+|+++.+++...+..+....+++.+++.||++
T Consensus 45 ~v~~~I~~ka----~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~l 117 (315)
T KOG0820|consen 45 LVIDQIVEKA----DLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFL 117 (315)
T ss_pred HHHHHHHhcc----CCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccc
Confidence 3444444332 4456789999999999999999985 58999999999999999888876555688999999998
Q ss_pred cccccCCCceeEEEEcCCCCC
Q 017476 258 GKLKDVEGKLSGVVSNPPYIP 278 (371)
Q Consensus 258 ~~l~~~~~~fDlIvsNPPYi~ 278 (371)
..- ...||++|+|-||--
T Consensus 118 K~d---~P~fd~cVsNlPyqI 135 (315)
T KOG0820|consen 118 KTD---LPRFDGCVSNLPYQI 135 (315)
T ss_pred cCC---CcccceeeccCCccc
Confidence 642 247999999999953
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.56 E-value=1.8e-06 Score=79.28 Aligned_cols=161 Identities=19% Similarity=0.080 Sum_probs=108.2
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCC-CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476 172 PRPETELMVDLVSDVLVRDNDGLR-DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (371)
Q Consensus 172 Prp~te~lv~~~~~~~~~~~~~~~-~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~ 250 (371)
++...+.+..++++.+........ +.+|+|+|+|.|.=++.+|-.+ |+.+|+-+|....-+...++-....+++| ++
T Consensus 43 ~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~ 120 (215)
T COG0357 43 IRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLEN-VE 120 (215)
T ss_pred CCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCC-eE
Confidence 455567777777765521111112 5799999999999999999654 88899999999999999999999999986 99
Q ss_pred EEEcCcccccccCCCc-eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 251 IRQGSWFGKLKDVEGK-LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 251 ~~~gD~~~~l~~~~~~-fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
++++.+.+.... .+ ||+|+| .. +..+..+.+-+..++++||.+++-.
T Consensus 121 i~~~RaE~~~~~--~~~~D~vts--------------RA----------------va~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 121 IVHGRAEEFGQE--KKQYDVVTS--------------RA----------------VASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred EehhhHhhcccc--cccCcEEEe--------------eh----------------ccchHHHHHHHHHhcccCCcchhhh
Confidence 999998654332 23 999998 11 2334467788889999999875433
Q ss_pred C--CcCcHHHHHHHHhccccCCceeEEEEecCCCC-ceEEE
Q 017476 330 N--GEKQCKFLKNYLENDSACSFCNVSIVSDFAGI-QRFVT 367 (371)
Q Consensus 330 ~--~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~-~R~~~ 367 (371)
. +.+...+....+... ...+..+.......+. +|.++
T Consensus 169 ~~~~~~e~~e~~~a~~~~-~~~~~~~~~~~~p~~~~~r~l~ 208 (215)
T COG0357 169 GLAGKDELPEAEKAILPL-GGQVEKVFSLTVPELDGERHLV 208 (215)
T ss_pred HHhhhhhHHHHHHHHHhh-cCcEEEEEEeecCCCCCceEEE
Confidence 1 333444444444432 1233444444444442 45443
No 207
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.54 E-value=8.4e-07 Score=77.97 Aligned_cols=117 Identities=17% Similarity=0.105 Sum_probs=79.2
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476 224 IAVDLNPLAAAVAAFNAQRYG--LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG 301 (371)
Q Consensus 224 ~gvDis~~al~~A~~n~~~~g--l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg 301 (371)
+|+|+|++|++.|+++....+ ..++++++++|..+ ++..++.||+|+++ |. .++-
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~--~~------------l~~~-------- 57 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMG--YG------------LRNV-------- 57 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEec--ch------------hhcC--------
Confidence 489999999999988765332 23469999999865 44445789999984 11 1111
Q ss_pred CCcHHHHHHHHHHHhcccccCcEEEEEECC-----------------------------------------cCcHHHHHH
Q 017476 302 VDGLDYLLHLCNGTASMLKPGGFFAFETNG-----------------------------------------EKQCKFLKN 340 (371)
Q Consensus 302 ~dGl~~~~~il~~a~~~LkpgG~lvle~~~-----------------------------------------~~q~~~v~~ 340 (371)
.....+++++.+.|||||.+++.... ....+++.+
T Consensus 58 ----~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ 133 (160)
T PLN02232 58 ----VDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELET 133 (160)
T ss_pred ----CCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHH
Confidence 12347889999999999999764211 112344555
Q ss_pred HHhccccCCceeEEEEecCCCCceEEEEEe
Q 017476 341 YLENDSACSFCNVSIVSDFAGIQRFVTGFR 370 (371)
Q Consensus 341 ~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~ 370 (371)
+|++ .||..++...-..|.-.+.+|.|
T Consensus 134 ll~~---aGF~~~~~~~~~~g~~~~~~~~~ 160 (160)
T PLN02232 134 LALE---AGFSSACHYEISGGFMGNLVAMR 160 (160)
T ss_pred HHHH---cCCCcceEEECcchHhHeeEeeC
Confidence 6664 78998888777777766666543
No 208
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.53 E-value=1.8e-07 Score=83.53 Aligned_cols=143 Identities=22% Similarity=0.312 Sum_probs=90.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-----cc----CCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-----KD----VEG 265 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-----~~----~~~ 265 (371)
.+.++||+||++|.++..+.+..++..+|+|||+.+. ... ..+.++++|..+.. .. ..+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence 3479999999999999999986434689999999986 122 23777788875431 11 125
Q ss_pred ceeEEEEcC-CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 266 KLSGVVSNP-PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 266 ~fDlIvsNP-PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
++|+|+|+- |...... ..+... -+......+..+...|++||.+++-+-.......+...++.
T Consensus 91 ~~dlv~~D~~~~~~g~~---------~~d~~~-------~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~ 154 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDR---------NIDEFI-------SIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR 154 (181)
T ss_dssp SESEEEE-------SSH---------HSSHHH-------HHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred CcceeccccccCCCCch---------hhHHHH-------HHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence 899999963 1111100 000000 13444556667788999999988877332222477777774
Q ss_pred cccCCceeEEEEecCC----CCceEEEEE
Q 017476 345 DSACSFCNVSIVSDFA----GIQRFVTGF 369 (371)
Q Consensus 345 ~~~~gf~~v~~~~Dl~----g~~R~~~a~ 369 (371)
.|..|.+++... +.+++++++
T Consensus 155 ----~F~~v~~~Kp~~sr~~s~E~Ylv~~ 179 (181)
T PF01728_consen 155 ----CFSKVKIVKPPSSRSESSEEYLVCR 179 (181)
T ss_dssp ----HHHHEEEEE-TTSBTTCBEEEEESE
T ss_pred ----CCeEEEEEECcCCCCCccEEEEEEc
Confidence 599999988654 677887765
No 209
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.52 E-value=8.7e-06 Score=75.53 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=81.1
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGV 270 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlI 270 (371)
....+++||=+|=.- ..++++|.. +...+|+.+|+++..++..++.+++.|++ ++.++.|+.++++. ..++||++
T Consensus 41 gdL~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 41 GDLEGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp T-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BSEE
T ss_pred CcccCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCCEE
Confidence 345678999988443 345555543 35679999999999999999999999987 99999999998875 36899999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc-EEEEEECCcC--c--HHHHHHHHhcc
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG-FFAFETNGEK--Q--CKFLKNYLEND 345 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG-~lvle~~~~~--q--~~~v~~~l~~~ 345 (371)
++||||- ++-+.-|+..+...||..| ..++-..... . ...+++.+.+
T Consensus 117 ~TDPPyT---------------------------~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~- 168 (243)
T PF01861_consen 117 FTDPPYT---------------------------PEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLE- 168 (243)
T ss_dssp EE---SS---------------------------HHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHT-
T ss_pred EeCCCCC---------------------------HHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHH-
Confidence 9999995 2345578888889998655 6666553322 1 2356777764
Q ss_pred ccCCceeEEEEecCC
Q 017476 346 SACSFCNVSIVSDFA 360 (371)
Q Consensus 346 ~~~gf~~v~~~~Dl~ 360 (371)
.||.--.++++++
T Consensus 169 --~gl~i~dii~~Fn 181 (243)
T PF01861_consen 169 --MGLVITDIIPDFN 181 (243)
T ss_dssp --S--EEEEEEEEEE
T ss_pred --CCcCHHHHHhhhc
Confidence 6787666766653
No 210
>PRK00536 speE spermidine synthase; Provisional
Probab=98.52 E-value=4.4e-06 Score=79.15 Aligned_cols=182 Identities=9% Similarity=-0.071 Sum_probs=113.2
Q ss_pred CCceeeEee-cccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEE
Q 017476 146 RKPFQYLVG-CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSII 224 (371)
Q Consensus 146 ~~P~~yi~g-~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~ 224 (371)
.-+.|.|.- +..-+|.-+.++ ++.. ....|.+...++-.. .-.....+++||=+|.|-|..+..+.+. +. +|+
T Consensus 25 kS~~Q~i~i~es~~fGr~LvLD-~~~~-te~dEfiYHEmLvHp-pl~~h~~pk~VLIiGGGDGg~~REvLkh--~~-~v~ 98 (262)
T PRK00536 25 RSEHNILEIFKSKDFGEIAMLN-KQLL-FKNFLHIESELLAHM-GGCTKKELKEVLIVDGFDLELAHQLFKY--DT-HVD 98 (262)
T ss_pred CCCCcEEEEEEccccccEEEEe-eeee-ecchhhhHHHHHHHH-HHhhCCCCCeEEEEcCCchHHHHHHHCc--CC-eeE
Confidence 356776533 444457777777 5554 333344444444333 1112345789999999999999999995 54 999
Q ss_pred EEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCC
Q 017476 225 AVDLNPLAAAVAAFNAQRY--GL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGG 301 (371)
Q Consensus 225 gvDis~~al~~A~~n~~~~--gl-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg 301 (371)
-|||+++.++.+++-+-.. ++ ..|++++. +.. ....++||+||.+-.| .
T Consensus 99 mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~--~~~~~~fDVIIvDs~~----------------~-------- 150 (262)
T PRK00536 99 FVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLL--DLDIKKYDLIICLQEP----------------D-------- 150 (262)
T ss_pred EEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhh--hccCCcCCEEEEcCCC----------------C--------
Confidence 9999999999999943221 22 34788876 221 1113689999995211 0
Q ss_pred CCcHHHHHHHHHHHhcccccCcEEEEEECC-cCcHHHHHHHHhccccCCceeEEEEec---CCCCceEEEEE
Q 017476 302 VDGLDYLLHLCNGTASMLKPGGFFAFETNG-EKQCKFLKNYLENDSACSFCNVSIVSD---FAGIQRFVTGF 369 (371)
Q Consensus 302 ~dGl~~~~~il~~a~~~LkpgG~lvle~~~-~~q~~~v~~~l~~~~~~gf~~v~~~~D---l~g~~R~~~a~ 369 (371)
..+.+.+.+.|+|||.++..... .-+.+.+..+.+.. +..|..+..+.- ..|..-|++|.
T Consensus 151 -------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l-~~~F~~v~~y~~~vp~~g~wgf~~aS 214 (262)
T PRK00536 151 -------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNM-GDFFSIAMPFVAPLRILSNKGYIYAS 214 (262)
T ss_pred -------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHH-HhhCCceEEEEecCCCcchhhhheec
Confidence 14567788999999999996632 22444455555443 245776655432 13555555553
No 211
>PRK10742 putative methyltransferase; Provisional
Probab=98.52 E-value=7.5e-07 Score=83.21 Aligned_cols=80 Identities=25% Similarity=0.269 Sum_probs=68.8
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEEcCcccccccCCCceeE
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY------G--LQDIIEIRQGSWFGKLKDVEGKLSG 269 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~------g--l~~~v~~~~gD~~~~l~~~~~~fDl 269 (371)
+|||+.+|+|..++.++.. +++|+++|.|+.+..+.+.|+++. + +..+++++++|..+.+......||+
T Consensus 91 ~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 8999999999999999985 567999999999999999999884 2 2257999999998887655558999
Q ss_pred EEEcCCCCCCC
Q 017476 270 VVSNPPYIPSD 280 (371)
Q Consensus 270 IvsNPPYi~~~ 280 (371)
|+.+|||-...
T Consensus 168 VYlDPMfp~~~ 178 (250)
T PRK10742 168 VYLDPMFPHKQ 178 (250)
T ss_pred EEECCCCCCCc
Confidence 99999997543
No 212
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.51 E-value=1.8e-06 Score=82.65 Aligned_cols=110 Identities=21% Similarity=0.265 Sum_probs=87.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEcCcccccccCCCceeEEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG--L-QDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g--l-~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
.+++||-+|-|.|..+..+.+.. +-.+++.|||++..+++|++-+.... . ..|++++.+|..+.+.....+||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 34699999999999999999974 67899999999999999999765432 2 46899999999988876556899999
Q ss_pred Ec--CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 272 SN--PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 272 sN--PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
++ +| + -|..+|+ -..+++.+.+.|+++|+++...
T Consensus 155 ~D~tdp-~---------------gp~~~Lf--------t~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 155 VDSTDP-V---------------GPAEALF--------TEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EcCCCC-C---------------CcccccC--------CHHHHHHHHHhcCCCcEEEEec
Confidence 95 11 1 1112222 2378899999999999999985
No 213
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.49 E-value=9.9e-07 Score=83.75 Aligned_cols=127 Identities=21% Similarity=0.260 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEECCccc----HHHHHHHHHhC----CCcEEEEEeCCHHHHHHHHHHHHH-----c
Q 017476 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSG----AIAIGIARVLG----SKGSIIAVDLNPLAAAVAAFNAQR-----Y 243 (371)
Q Consensus 177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG----~~al~la~~~~----~~~~V~gvDis~~al~~A~~n~~~-----~ 243 (371)
+.+.+.++..+...... .+-+|+-.||+|| .+++.+.+.++ ...+|+|+|+|..+|+.|+.-.-. .
T Consensus 79 ~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 79 EELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 45666666544222211 4679999999999 57777777652 157999999999999999752110 1
Q ss_pred C-----------------------CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccC
Q 017476 244 G-----------------------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300 (371)
Q Consensus 244 g-----------------------l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~g 300 (371)
+ +...|.|.+.|+.+... ..+.||+|+| .+.+-.+..+
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfC------RNVLIYFd~~------------ 218 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFC------RNVLIYFDEE------------ 218 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEE------cceEEeeCHH------------
Confidence 1 12357888888877653 3578999999 2222222222
Q ss_pred CCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 301 GVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 301 g~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.=.++++..+..|+|||+|++-+
T Consensus 219 ------~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 219 ------TQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred ------HHHHHHHHHHHHhCCCCEEEEcc
Confidence 22378888999999999999976
No 214
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.49 E-value=2.8e-07 Score=84.87 Aligned_cols=99 Identities=21% Similarity=0.202 Sum_probs=65.9
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi 277 (371)
.++|+|||+|..++.+|..+ .+|+|+|+|+.||++|++.-...-......+...+..+ +...+++.|+|++-
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~-L~g~e~SVDlI~~A---- 107 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD-LLGGEESVDLITAA---- 107 (261)
T ss_pred eEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCcccccccccc-ccCCCcceeeehhh----
Confidence 79999999998888888875 58999999999999988742211100012333333333 33235789999981
Q ss_pred CCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc-EEEE
Q 017476 278 PSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG-FFAF 327 (371)
Q Consensus 278 ~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG-~lvl 327 (371)
..+..| ++.++.+.+.+.||+.| .+++
T Consensus 108 ---------qa~HWF--------------dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 108 ---------QAVHWF--------------DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ---------hhHHhh--------------chHHHHHHHHHHcCCCCCEEEE
Confidence 222222 24588999999999877 4443
No 215
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.43 E-value=2.4e-06 Score=73.13 Aligned_cols=115 Identities=19% Similarity=0.261 Sum_probs=78.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC-CceeEEEEcCCCCCCCCcccchhhhcccCccccccC
Q 017476 222 SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG 300 (371)
Q Consensus 222 ~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~-~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~g 300 (371)
+|+|+||.++|++.+++.++..++.++++++..+-........ +++|+++.|-=|.|.+|..-.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~------------- 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTK------------- 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB---------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcC-------------
Confidence 6999999999999999999999998899999987644333233 48999999999998877443221
Q ss_pred CCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcC----cHHHHHHHHhccccCCceeE
Q 017476 301 GVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEK----QCKFLKNYLENDSACSFCNV 353 (371)
Q Consensus 301 g~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~----q~~~v~~~l~~~~~~gf~~v 353 (371)
-+.....++.+.+.|++||.+.+.+- |.. -.+.|.++++......|...
T Consensus 68 ----~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 68 ----PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp ----HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred ----cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 12233677888899999999988762 222 34567788887666677543
No 216
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=98.43 E-value=3.1e-07 Score=88.29 Aligned_cols=131 Identities=17% Similarity=0.216 Sum_probs=91.9
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHH-------HHHHHHHHcCCCC-cEEEEEcCcccccccCC
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA-------VAAFNAQRYGLQD-IIEIRQGSWFGKLKDVE 264 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~-------~A~~n~~~~gl~~-~v~~~~gD~~~~l~~~~ 264 (371)
..+++.|.|...|||.+.+..|. | ++.|+|.||+-.++. -.+.|.+++|... -+.++.+|...+.-...
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~-F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn 282 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAH-F--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSN 282 (421)
T ss_pred cCCCCEEecCccccCceeeehhh-h--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhc
Confidence 34678999999999999999988 4 689999999998876 3567888888544 36788888866433335
Q ss_pred CceeEEEEcCCCCCCCCcccc--------h--hhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 265 GKLSGVVSNPPYIPSDDISGL--------Q--VEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 265 ~~fDlIvsNPPYi~~~~~~~l--------~--~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
..||.|||+|||.-....... . ..-..|-|..... .-.+.+..++.-+.++|..||++++=.
T Consensus 283 ~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~y---sl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 283 LKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQY---SLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred ceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchh---HHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 689999999999633221111 0 0111232322111 113566788999999999999999854
No 217
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.41 E-value=4.4e-07 Score=87.13 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=75.3
Q ss_pred CCeEEEECCcccH----HHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHH------------------H-----cC-
Q 017476 196 DGFWVDLGTGSGA----IAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQ------------------R-----YG- 244 (371)
Q Consensus 196 ~~~VLDlG~GsG~----~al~la~~~~---~~~~V~gvDis~~al~~A~~n~~------------------~-----~g- 244 (371)
+-+|+..||+||- +++.+...++ ...+|+|+|+|+.+++.|++-.- . .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999994 5555555321 14689999999999999987521 0 00
Q ss_pred ------CCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcc
Q 017476 245 ------LQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (371)
Q Consensus 245 ------l~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~ 318 (371)
+..+|+|.+.|+.+......+.||+|+|. .|.-|-. -+.-..+++...+.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR--------------NvliyF~----------~~~~~~vl~~l~~~ 251 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR--------------NVMIYFD----------KTTQERILRRFVPL 251 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHh--------------hHHhcCC----------HHHHHHHHHHHHHH
Confidence 22457899999887422224789999992 1211110 12345789999999
Q ss_pred cccCcEEEEEE
Q 017476 319 LKPGGFFAFET 329 (371)
Q Consensus 319 LkpgG~lvle~ 329 (371)
|+|||+|++-+
T Consensus 252 L~pgG~L~lG~ 262 (287)
T PRK10611 252 LKPDGLLFAGH 262 (287)
T ss_pred hCCCcEEEEeC
Confidence 99999988877
No 218
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4e-06 Score=75.87 Aligned_cols=103 Identities=18% Similarity=0.281 Sum_probs=76.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCC---------CCcEEEEEcCcccccccCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGL---------QDIIEIRQGSWFGKLKDVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~-~V~gvDis~~al~~A~~n~~~~gl---------~~~v~~~~gD~~~~l~~~~ 264 (371)
++.++||+|+|||.++..++..++... .++|||.-++.++.+++|+...-. ..++.++.||...-..+ .
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-~ 160 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-Q 160 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-c
Confidence 567999999999999999997765443 459999999999999999976531 23578899998665443 4
Q ss_pred CceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 265 GKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 265 ~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
.+||.|.+- ... ..+-+.....|++||.+++-.+
T Consensus 161 a~YDaIhvG-----Aaa---------------------------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 161 APYDAIHVG-----AAA---------------------------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CCcceEEEc-----cCc---------------------------cccHHHHHHhhccCCeEEEeec
Confidence 689999871 100 0223344478999999999883
No 219
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=9.1e-07 Score=81.57 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=74.3
Q ss_pred CeEEEECCcccHHHHHHHHHhCCC--cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-c--cCCCceeEEE
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSK--GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-K--DVEGKLSGVV 271 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~--~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-~--~~~~~fDlIv 271 (371)
.+||++|||.|.....+.+.. ++ ..|++.|.|+.|++..++|..... .++.....|+..+- . ...+.+|+|+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~-~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTS-PNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIIT 149 (264)
T ss_pred hhheeeccCCCcccchhhhcC-CCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEE
Confidence 389999999999999998863 55 789999999999999999875443 34555555554321 1 1247899887
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
+ -| .+..+.+ +.....++...++|||||.+++-
T Consensus 150 ~--IF----vLSAi~p------------------ek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 150 L--IF----VLSAIHP------------------EKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred E--EE----EEeccCh------------------HHHHHHHHHHHHHhCCCcEEEEe
Confidence 6 01 0111111 33457888889999999999994
No 220
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.33 E-value=4.1e-06 Score=80.19 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=84.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-C----CcEEEEEcCcccc-----cccCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL-Q----DIIEIRQGSWFGK-----LKDVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl-~----~~v~~~~gD~~~~-----l~~~~~ 265 (371)
...++|||||-|.-++-.-+. .-..++|+||.+..++.|++..+...- . -.+.|+.+|.+.. ++..+.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 457999999999988877764 456899999999999999987654321 1 1378999997642 222233
Q ss_pred ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 266 ~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
+||+|-|- |--|.++. ..+-.+.++.++.++|+|||+++-.++. ...+..-+++
T Consensus 196 ~fDivScQ------------------F~~HYaFe----tee~ar~~l~Nva~~LkpGG~FIgTiPd---sd~Ii~rlr~ 249 (389)
T KOG1975|consen 196 RFDIVSCQ------------------FAFHYAFE----TEESARIALRNVAKCLKPGGVFIGTIPD---SDVIIKRLRA 249 (389)
T ss_pred Ccceeeee------------------eeEeeeec----cHHHHHHHHHHHHhhcCCCcEEEEecCc---HHHHHHHHHh
Confidence 59998872 22222222 1455678899999999999999998843 3444444554
No 221
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.1e-05 Score=73.36 Aligned_cols=137 Identities=24% Similarity=0.260 Sum_probs=93.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------cC-CCce
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DV-EGKL 267 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~~-~~~f 267 (371)
++.+|+|||+-.|.++..+++..+++..|+|+|+.|-. ..+ .|.++++|+.+.-. .. ...+
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~-~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIP-GVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCC-CceEEeeeccCccHHHHHHHHcCCCCc
Confidence 46799999999999999999998777789999998833 123 39999999976421 11 2347
Q ss_pred eEEEEcC--CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhcc
Q 017476 268 SGVVSNP--PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEND 345 (371)
Q Consensus 268 DlIvsNP--PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~ 345 (371)
|+|+|++ .-...... .| ++ -+......++-+..+|++||.+++-.--....+.+...++
T Consensus 113 DvV~sD~ap~~~g~~~~--------Dh-~r--------~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~-- 173 (205)
T COG0293 113 DVVLSDMAPNTSGNRSV--------DH-AR--------SMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALR-- 173 (205)
T ss_pred ceEEecCCCCcCCCccc--------cH-HH--------HHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHH--
Confidence 9999853 11100000 11 00 0233446777888999999999997733334455556665
Q ss_pred ccCCceeEEEEecCCCCce
Q 017476 346 SACSFCNVSIVSDFAGIQR 364 (371)
Q Consensus 346 ~~~gf~~v~~~~Dl~g~~R 364 (371)
..|..|++.+..+-+.+
T Consensus 174 --~~F~~v~~~KP~aSR~~ 190 (205)
T COG0293 174 --RLFRKVKIFKPKASRKR 190 (205)
T ss_pred --HhhceeEEecCccccCC
Confidence 45999999988776654
No 222
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.26 E-value=1.1e-05 Score=78.29 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=123.7
Q ss_pred CceeeEeecccccceeeEeeCCcccccch----HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcE
Q 017476 147 KPFQYLVGCEHWRDLVLSVEEGVFIPRPE----TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGS 222 (371)
Q Consensus 147 ~P~~yi~g~~~f~~~~~~v~~~vliPrp~----te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~ 222 (371)
.|.|.|+-..+=.++.++.+-+.=+..-+ +|.++--.++.+ ....++|-+|.|.|.-+..+.+. +.-.+
T Consensus 243 spYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~------~~a~~vLvlGGGDGLAlRellky-P~~~q 315 (508)
T COG4262 243 SPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSV------RGARSVLVLGGGDGLALRELLKY-PQVEQ 315 (508)
T ss_pred CccceEEEEEecCceEEEEcCceeeeechhhhhhheeeecccccc------cccceEEEEcCCchHHHHHHHhC-CCcce
Confidence 45666655444456777777765443322 233332222211 23458999999999999999884 23679
Q ss_pred EEEEeCCHHHHHHHHHHHHHc-----CC-CCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccc
Q 017476 223 IIAVDLNPLAAAVAAFNAQRY-----GL-QDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRL 296 (371)
Q Consensus 223 V~gvDis~~al~~A~~n~~~~-----gl-~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~ 296 (371)
|+-||++|++++.+++|.... .+ +.|++++..|.++++....+.||.||.+-|=.....+..+
T Consensus 316 I~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rl----------- 384 (508)
T COG4262 316 ITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRL----------- 384 (508)
T ss_pred EEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhh-----------
Confidence 999999999999999765322 12 3589999999999887766799999998664433332211
Q ss_pred cccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHH----HHHHHHhccccCCceeE--EEEecCCCCceEEEEE
Q 017476 297 ALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCK----FLKNYLENDSACSFCNV--SIVSDFAGIQRFVTGF 369 (371)
Q Consensus 297 aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~----~v~~~l~~~~~~gf~~v--~~~~Dl~g~~R~~~a~ 369 (371)
.-.++...+.++|+++|.+++..+...... .+-+-+++ +||... +++-.-.|..-|+++.
T Consensus 385 ----------YS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~---AG~~~~Pyhv~VPTFGeWGf~l~~ 450 (508)
T COG4262 385 ----------YSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKS---AGYRVWPYHVHVPTFGEWGFILAA 450 (508)
T ss_pred ----------hhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHh---CcceeeeeEEecCcccccceeecc
Confidence 112455667799999999999885332222 23444553 677643 4445566666666553
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.25 E-value=5.6e-06 Score=78.61 Aligned_cols=91 Identities=22% Similarity=0.235 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (371)
Q Consensus 177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~ 256 (371)
+.+++.+.+.+ +..++..|+|+|+|.|.++..+++.. .+++++|+++..++..++... ...+++++.+|+
T Consensus 16 ~~~~~~Iv~~~----~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDAL----DLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHH----TCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-T
T ss_pred HHHHHHHHHhc----CCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecch
Confidence 35666666665 22256799999999999999999972 799999999999998887654 345699999999
Q ss_pred ccccccC--CCceeEEEEcCCCC
Q 017476 257 FGKLKDV--EGKLSGVVSNPPYI 277 (371)
Q Consensus 257 ~~~l~~~--~~~fDlIvsNPPYi 277 (371)
++..... ......||+|.||.
T Consensus 86 l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEETGT
T ss_pred hccccHHhhcCCceEEEEEeccc
Confidence 8743321 24678999999993
No 224
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.23 E-value=9.4e-07 Score=71.80 Aligned_cols=101 Identities=26% Similarity=0.363 Sum_probs=45.1
Q ss_pred EEECCcccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCC-CceeEEEEcCCC
Q 017476 200 VDLGTGSGAIAIGIARVLGSKG--SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVE-GKLSGVVSNPPY 276 (371)
Q Consensus 200 LDlG~GsG~~al~la~~~~~~~--~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~-~~fDlIvsNPPY 276 (371)
||+||..|..++.+++.+.+.. +++++|..+. .+.+++++++.++.+++++++++..+.++... +++|+|+.+-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-- 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--
Confidence 6899999999999888764443 7999999996 44556666667777789999999876655443 7899999731
Q ss_pred CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
.|. ......-++.+.+.|+|||.+++.
T Consensus 78 --------------~H~-----------~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 --------------DHS-----------YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----------------------------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred --------------CCC-----------HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 111 234456677888999999998874
No 225
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.20 E-value=5.3e-05 Score=69.26 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=98.9
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCC
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPY 276 (371)
.++.|+||--|.+...+.+. ++...++++|+++..++.|.+|+.++++.++++...+|.+..+.. +..+|.|+-
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-~d~~d~ivI---- 91 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-EDEIDVIVI---- 91 (226)
T ss_pred CceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-cCCcCEEEE----
Confidence 36999999999999999997 578899999999999999999999999999999999999887764 347888775
Q ss_pred CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCce
Q 017476 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFC 351 (371)
Q Consensus 277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~ 351 (371)
..| |-..+..|+++..+.|+.--.+++.- ..+...+++++.+ .+|.
T Consensus 92 ------AGM------------------GG~lI~~ILee~~~~l~~~~rlILQP--n~~~~~LR~~L~~---~~~~ 137 (226)
T COG2384 92 ------AGM------------------GGTLIREILEEGKEKLKGVERLILQP--NIHTYELREWLSA---NSYE 137 (226)
T ss_pred ------eCC------------------cHHHHHHHHHHhhhhhcCcceEEECC--CCCHHHHHHHHHh---CCce
Confidence 111 23567789999999888654566655 5788999999997 5663
No 226
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.19 E-value=3e-05 Score=75.62 Aligned_cols=138 Identities=13% Similarity=0.106 Sum_probs=89.3
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQRY 243 (371)
Q Consensus 167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~---~~~~V~gvDis~~al~~A~~n~~~~ 243 (371)
|..+--|.|.+.|-+...+.. .. ..++..++|+|||+|.-...+.+.+. .....+++|+|.++|+.+.+++...
T Consensus 51 pEYYptr~E~~iL~~~~~~Ia-~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~ 127 (319)
T TIGR03439 51 PEYYLTNDEIEILKKHSSDIA-AS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG 127 (319)
T ss_pred CccCChHHHHHHHHHHHHHHH-Hh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc
Confidence 444434677777777666554 21 12345899999999987666665542 2467999999999999999998744
Q ss_pred CCCC-cEEEEEcCcccccccC-----CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476 244 GLQD-IIEIRQGSWFGKLKDV-----EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (371)
Q Consensus 244 gl~~-~v~~~~gD~~~~l~~~-----~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~ 317 (371)
..+. .+.-+.+|+.+.+..+ .....+++. + ...+..++|.. ...+++.+.+
T Consensus 128 ~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~f-----l-------GSsiGNf~~~e-----------a~~fL~~~~~ 184 (319)
T TIGR03439 128 NFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILW-----L-------GSSIGNFSRPE-----------AAAFLAGFLA 184 (319)
T ss_pred cCCCeEEEEEEecHHHHHhhcccccccCCccEEEE-----e-------CccccCCCHHH-----------HHHHHHHHHH
Confidence 4442 2455899987653311 122445444 1 12233444433 3368888888
Q ss_pred -ccccCcEEEEEEC
Q 017476 318 -MLKPGGFFAFETN 330 (371)
Q Consensus 318 -~LkpgG~lvle~~ 330 (371)
.|+|||.+++-..
T Consensus 185 ~~l~~~d~lLiG~D 198 (319)
T TIGR03439 185 TALSPSDSFLIGLD 198 (319)
T ss_pred hhCCCCCEEEEecC
Confidence 9999999999764
No 227
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.16 E-value=1.9e-05 Score=74.08 Aligned_cols=92 Identities=21% Similarity=0.343 Sum_probs=65.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-CcccccccCCCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~~~~~~fDlIvsN 273 (371)
...++||||+|.|.++..++..+ .+|++.|+|+.|.. .+++.|. +++.. ||.+ .+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~----rL~~kg~----~vl~~~~w~~----~~~~fDvIsc- 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRW----RLSKKGF----TVLDIDDWQQ----TDFKFDVISC- 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHH----HHHhCCC----eEEehhhhhc----cCCceEEEee-
Confidence 45689999999999999999987 57999999998854 4444554 33333 3322 2368999999
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
++-|. +.+. ...+++.+++.|+|+|++++
T Consensus 158 --------LNvLD---Rc~~--------------P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 158 --------LNVLD---RCDR--------------PLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred --------hhhhh---ccCC--------------HHHHHHHHHHHhCCCCEEEE
Confidence 22222 1222 34788899999999999877
No 228
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.16 E-value=1.9e-05 Score=71.79 Aligned_cols=126 Identities=20% Similarity=0.242 Sum_probs=67.9
Q ss_pred HHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc
Q 017476 180 VDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK 259 (371)
Q Consensus 180 v~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~ 259 (371)
++.+++++ .. ..+...|.|+|||.+.++..+. ...+|+..|+-.. . -.+...|+..
T Consensus 60 vd~iI~~l-~~--~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~--------------n--~~Vtacdia~- 115 (219)
T PF05148_consen 60 VDVIIEWL-KK--RPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP--------------N--PRVTACDIAN- 115 (219)
T ss_dssp HHHHHHHH-CT--S-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------S--TTEEES-TTS-
T ss_pred HHHHHHHH-Hh--cCCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC--------------C--CCEEEecCcc-
Confidence 45555555 21 1234689999999999996543 2358999999652 1 2366788843
Q ss_pred cccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE-EEC-CcCcHHH
Q 017476 260 LKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF-ETN-GEKQCKF 337 (371)
Q Consensus 260 l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl-e~~-~~~q~~~ 337 (371)
++-.++.+|++|+. ++|-| ..+..++.+|.+.||+||.|.+ |+. .....+.
T Consensus 116 vPL~~~svDv~Vfc----------------------LSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~ 168 (219)
T PF05148_consen 116 VPLEDESVDVAVFC----------------------LSLMG-----TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQ 168 (219)
T ss_dssp -S--TT-EEEEEEE----------------------S---S-----S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHH
T ss_pred CcCCCCceeEEEEE----------------------hhhhC-----CCcHHHHHHHHheeccCcEEEEEEecccCcCHHH
Confidence 44345899998873 22222 2355789999999999999877 552 1123344
Q ss_pred HHHHHhccccCCceeEEEEecCCC
Q 017476 338 LKNYLENDSACSFCNVSIVSDFAG 361 (371)
Q Consensus 338 v~~~l~~~~~~gf~~v~~~~Dl~g 361 (371)
..+.++ .-||.... +|..+
T Consensus 169 F~~~~~---~~GF~~~~--~d~~n 187 (219)
T PF05148_consen 169 FIKALK---KLGFKLKS--KDESN 187 (219)
T ss_dssp HHHHHH---CTTEEEEE--EE--S
T ss_pred HHHHHH---HCCCeEEe--cccCC
Confidence 445555 46886654 45444
No 229
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.15 E-value=5.7e-05 Score=74.80 Aligned_cols=167 Identities=19% Similarity=0.165 Sum_probs=110.3
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc-ccCCCceeEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-KDVEGKLSGV 270 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-~~~~~~fDlI 270 (371)
.+.++.||||+|+-.|.=+..+|..+...+.|+|.|.+..-++..+.|+.++|+.+ ..+...|..+.. ....++||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCccccee
Confidence 44567899999999999988888877778899999999999999999999999876 667777765432 2223489999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcH-HHHHHHHHHHhcccccCcEEEEEECC--cCcHHHHH-HHHhccc
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGL-DYLLHLCNGTASMLKPGGFFAFETNG--EKQCKFLK-NYLENDS 346 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl-~~~~~il~~a~~~LkpgG~lvle~~~--~~q~~~v~-~~l~~~~ 346 (371)
+.+-|+...+.+..- +.+...+-...+ .-+ ..-++++..|.+.+++||+|+..+-. ..-.+.+. -.|++.
T Consensus 317 LLDAPCSGtgvi~K~-~~vkt~k~~~di----~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~- 390 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKD-QSVKTNKTVKDI----LRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKR- 390 (460)
T ss_pred eecCCCCCCcccccc-cccccchhHHHH----HHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhC-
Confidence 999999764433211 111110000000 001 12357999999999999999997632 12234444 444431
Q ss_pred cCCceeEEEEecCCCCceEE
Q 017476 347 ACSFCNVSIVSDFAGIQRFV 366 (371)
Q Consensus 347 ~~gf~~v~~~~Dl~g~~R~~ 366 (371)
-.++-+-...|+.|-.||.
T Consensus 391 -p~~kL~p~~~~iG~~G~~~ 409 (460)
T KOG1122|consen 391 -PEVKLVPTGLDIGGEGRFR 409 (460)
T ss_pred -CceEeccccccCCCCCccc
Confidence 2344555556666655443
No 230
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.11 E-value=1.1e-05 Score=73.77 Aligned_cols=132 Identities=15% Similarity=0.094 Sum_probs=86.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
...+.||.|+|.|.++-.+...+ -.+|..||.++..++.|++.+... .....++++..+.+..+. .++||+|.+.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~-~~~YDlIW~Q- 129 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE-EGKYDLIWIQ- 129 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-----TT-EEEEEEE-
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC-CCcEeEEEeh-
Confidence 35689999999999998765432 358999999999999999765431 122357777777555443 4799999982
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC----C-----------cCcHHHHH
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN----G-----------EKQCKFLK 339 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~----~-----------~~q~~~v~ 339 (371)
=+.-|-. -+++..+++.+...|+|||++++--| + .+..+..+
T Consensus 130 -------------W~lghLT----------D~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~ 186 (218)
T PF05891_consen 130 -------------WCLGHLT----------DEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR 186 (218)
T ss_dssp -------------S-GGGS-----------HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred -------------HhhccCC----------HHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence 1222322 24456899999999999999999432 1 13467889
Q ss_pred HHHhccccCCceeEEEEe
Q 017476 340 NYLENDSACSFCNVSIVS 357 (371)
Q Consensus 340 ~~l~~~~~~gf~~v~~~~ 357 (371)
+++++ +|+.-|+...
T Consensus 187 ~lF~~---AGl~~v~~~~ 201 (218)
T PF05891_consen 187 ELFKQ---AGLRLVKEEK 201 (218)
T ss_dssp HHHHH---CT-EEEEEEE
T ss_pred HHHHH---cCCEEEEecc
Confidence 99986 7887766543
No 231
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.09 E-value=3.6e-05 Score=67.43 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (371)
Q Consensus 174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~ 253 (371)
|.+..+++.+...+ +...+..|||+|.|+|.++-++.++-.+...++++|.|++......+.. +.++++.
T Consensus 31 PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~ 100 (194)
T COG3963 31 PSSSILARKMASVI----DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIIN 100 (194)
T ss_pred CCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccc
Confidence 34556666666655 3445668999999999999999886446678999999999987765532 2378999
Q ss_pred cCccccc---c-cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 254 GSWFGKL---K-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 254 gD~~~~l---~-~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
||.++.- . .....||.|||--|...-. +..-.++++.+...|..||.++--.
T Consensus 101 gda~~l~~~l~e~~gq~~D~viS~lPll~~P------------------------~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 101 GDAFDLRTTLGEHKGQFFDSVISGLPLLNFP------------------------MHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cchhhHHHHHhhcCCCeeeeEEeccccccCc------------------------HHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 9987632 1 2245799999977764211 2223378899999999999988766
Q ss_pred CC
Q 017476 330 NG 331 (371)
Q Consensus 330 ~~ 331 (371)
-|
T Consensus 157 Yg 158 (194)
T COG3963 157 YG 158 (194)
T ss_pred ec
Confidence 33
No 232
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.06 E-value=6.3e-06 Score=73.37 Aligned_cols=69 Identities=25% Similarity=0.273 Sum_probs=59.6
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
+.+.|||+|||.++...|+. ..+|+++|.+|...++|.+|+...|..+ ++++.+|....-- +..|+|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y~f---e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDYDF---ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccccc---cccceeHH
Confidence 58999999999999998886 3699999999999999999998888754 9999999976421 46899998
No 233
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.06 E-value=1e-05 Score=75.19 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=34.6
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAV 235 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~ 235 (371)
.++.++||+|||+|.++..+++. +..+|+|||+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHH
Confidence 35678999999999999999985 45689999999987765
No 234
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.03 E-value=8.1e-05 Score=67.76 Aligned_cols=117 Identities=17% Similarity=0.076 Sum_probs=70.6
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcC----------------------------
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYG---------------------------- 244 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~g---------------------------- 244 (371)
..+-++.|.|||+|.+.-.+.-..+ .-.+|+|.|++++++++|++|+....
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 3566899999999999877765421 12489999999999999999975321
Q ss_pred -------------CCCcEEEEEcCcccccc----cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHH
Q 017476 245 -------------LQDIIEIRQGSWFGKLK----DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDY 307 (371)
Q Consensus 245 -------------l~~~v~~~~gD~~~~l~----~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~ 307 (371)
-.....+.+.|.+++-. ......|+||.+-||....++.. +-+-+-
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g-----------------~~~~~p 192 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQG-----------------EGSGGP 192 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS--------------------HHH
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccC-----------------CCCCCc
Confidence 11126788889887422 11234799999999976554321 112234
Q ss_pred HHHHHHHHhcccccCcEEEE
Q 017476 308 LLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 308 ~~~il~~a~~~LkpgG~lvl 327 (371)
...+++.....|-.++++++
T Consensus 193 ~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 193 VAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHHHhhCCCCcEEEE
Confidence 56899999999966666666
No 235
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.02 E-value=6.8e-05 Score=71.72 Aligned_cols=68 Identities=22% Similarity=0.128 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (371)
Q Consensus 176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 243 (371)
+...+..++..+........+.+|||+|+|.|....++...++.-.+++++|.|+.++++++.-+...
T Consensus 14 ~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 14 TYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred HHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 33444444444433334567889999999999988888877744558999999999999998866543
No 236
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=5.8e-05 Score=67.26 Aligned_cols=136 Identities=18% Similarity=0.163 Sum_probs=91.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-Ccccccc-------cCCCc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG-SWFGKLK-------DVEGK 266 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g-D~~~~l~-------~~~~~ 266 (371)
++.+|||+||..|+.+..+-+..+|++.|.|||+-.-. ..+ .+.++++ |+.++.. ....+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPE-GATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCC-CcccccccccCCHHHHHHHHHhCCCCc
Confidence 46699999999999999999988899999999985421 122 3667776 6554321 12368
Q ss_pred eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccc
Q 017476 267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDS 346 (371)
Q Consensus 267 fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~ 346 (371)
.|+|+|+----.+ .-..+.|+-. ++.....+-.+...++|+|.++.-+-...+...+++.|.+
T Consensus 137 VdvVlSDMapnaT------Gvr~~Dh~~~---------i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~-- 199 (232)
T KOG4589|consen 137 VDVVLSDMAPNAT------GVRIRDHYRS---------IELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA-- 199 (232)
T ss_pred ccEEEeccCCCCc------CcchhhHHHH---------HHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHH--
Confidence 9999995211111 0111222211 3344456667778899999999998655677777777764
Q ss_pred cCCceeEEEEecCCC
Q 017476 347 ACSFCNVSIVSDFAG 361 (371)
Q Consensus 347 ~~gf~~v~~~~Dl~g 361 (371)
.|+.|++.+.-+.
T Consensus 200 --~f~~Vk~vKP~As 212 (232)
T KOG4589|consen 200 --VFTNVKKVKPDAS 212 (232)
T ss_pred --HhhhcEeeCCccc
Confidence 4999999876554
No 237
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.00 E-value=3.9e-05 Score=65.93 Aligned_cols=96 Identities=24% Similarity=0.294 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHh---CCCcEEEEEeCCHHHHHHHHHHHHHcC--CCCcE
Q 017476 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---GSKGSIIAVDLNPLAAAVAAFNAQRYG--LQDII 249 (371)
Q Consensus 175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~g--l~~~v 249 (371)
+.+.+++.+...........+...|+|+|||.|.++..++..+ .++.+|+|||.++..++.|.+..+..+ +..++
T Consensus 5 Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~ 84 (141)
T PF13679_consen 5 EIERMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRL 84 (141)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccc
Confidence 4455555555544110122356799999999999999999833 257899999999999999999988877 54567
Q ss_pred EEEEcCcccccccCCCceeEEEE
Q 017476 250 EIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 250 ~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
++..++..+... ....++++.
T Consensus 85 ~~~~~~~~~~~~--~~~~~~~vg 105 (141)
T PF13679_consen 85 SFIQGDIADESS--SDPPDILVG 105 (141)
T ss_pred hhhccchhhhcc--cCCCeEEEE
Confidence 777776643322 245666665
No 238
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=97.98 E-value=6.8e-05 Score=77.73 Aligned_cols=153 Identities=20% Similarity=0.169 Sum_probs=90.3
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhC---CCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLG---SKGSIIAVDLNPLAAAVAAFNAQRY 243 (371)
Q Consensus 167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~---~~~~V~gvDis~~al~~A~~n~~~~ 243 (371)
.-++.|+...+++++.+.... .+...+.|+.||||.+.+...+... ....++|.+....+...|+.|+..+
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~~~------dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~ 268 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIGKK------DTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH 268 (501)
T ss_pred ceeeCcHHHHHHHHHHhccCC------CCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc
Confidence 335568877777665432111 1235899999999999887655431 1246999999999999999999887
Q ss_pred CCCC-cEEEEEcCccccccc-CCCceeEEEEcCCCCCCCCcccch---hhhcccCccccccCCCCcHHHHHHHHHHHhcc
Q 017476 244 GLQD-IIEIRQGSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQ---VEVGKHEPRLALDGGVDGLDYLLHLCNGTASM 318 (371)
Q Consensus 244 gl~~-~v~~~~gD~~~~l~~-~~~~fDlIvsNPPYi~~~~~~~l~---~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~ 318 (371)
+... ......+|-+..... ...+||.|++||||...-....++ .....+.-+..-.-...|+.++ ..+...
T Consensus 269 ~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi----~h~~~~ 344 (501)
T TIGR00497 269 NIDYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFV----LHALYV 344 (501)
T ss_pred CCCccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHH----HHHHHh
Confidence 7642 244445554442111 124699999999996421111111 1111111010000123344444 445578
Q ss_pred cccCcEEEEEE
Q 017476 319 LKPGGFFAFET 329 (371)
Q Consensus 319 LkpgG~lvle~ 329 (371)
|++||...+..
T Consensus 345 L~~gG~~aiI~ 355 (501)
T TIGR00497 345 LGQEGTAAIVC 355 (501)
T ss_pred cCCCCeEEEEe
Confidence 99999876655
No 239
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.97 E-value=0.00018 Score=68.63 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=76.1
Q ss_pred CCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-RYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 195 ~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~-~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
.+.+|+=+|+|. -..++.+++...++..|+++|++++|++.|++-+. ..|+..+++|+.+|..+...+ -..||+|+.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d-l~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD-LKEYDVVFL 198 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-----SEEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc-cccCCEEEE
Confidence 356999999995 45566677655567889999999999999998777 567788899999998764333 258999886
Q ss_pred cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcCcHHHHHHHHhccccCCce
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEKQCKFLKNYLENDSACSFC 351 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~q~~~v~~~l~~~~~~gf~ 351 (371)
. |+.|.... .=.++++...++++||..+++=.. |.++ -+-....-..-.||.
T Consensus 199 A-----------------------alVg~~~e--~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~--~LYp~vd~~~l~gf~ 251 (276)
T PF03059_consen 199 A-----------------------ALVGMDAE--PKEEILEHLAKHMAPGARLVVRSAHGLRS--FLYPVVDPEDLRGFE 251 (276)
T ss_dssp ------------------------TT-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGG--GSS----TGGGTTEE
T ss_pred h-----------------------hhcccccc--hHHHHHHHHHhhCCCCcEEEEecchhhHH--HcCCCCChHHCCCeE
Confidence 1 11211100 112688888999999999888542 2211 011111111124787
Q ss_pred eEEEEecCC-CCceEEEEEeC
Q 017476 352 NVSIVSDFA-GIQRFVTGFRQ 371 (371)
Q Consensus 352 ~v~~~~Dl~-g~~R~~~a~~~ 371 (371)
...++.... =+.-+++++|.
T Consensus 252 ~~~~~hP~~~ViNSvv~~rk~ 272 (276)
T PF03059_consen 252 VLAVVHPTDEVINSVVFARKK 272 (276)
T ss_dssp EEEEE---TT---EEEEE---
T ss_pred EEEEECCCCCceeEEEEEEec
Confidence 755544332 35567777763
No 240
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.95 E-value=3.2e-05 Score=65.88 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=52.7
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~ 258 (371)
.++|+|||.|.++..+++.. +..+|+++|.++.+.+.+++|++.+++++ +++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeC
Confidence 48999999999999999874 77799999999999999999999998865 9999887754
No 241
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.94 E-value=3.6e-05 Score=70.51 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=51.8
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH-------cCC-CCcEEEEEcCccccc--cc
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR-------YGL-QDIIEIRQGSWFGKL--KD 262 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~-------~gl-~~~v~~~~gD~~~~l--~~ 262 (371)
..+...++|||||.|...+.+|... +-.+.+|||+.+...+.|+.+.+. .|. ..++++.++|+.+.. ..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 3456799999999999998888775 445699999999999888765543 233 346899999987642 11
Q ss_pred CCCceeEEEEc
Q 017476 263 VEGKLSGVVSN 273 (371)
Q Consensus 263 ~~~~fDlIvsN 273 (371)
.....|+|++|
T Consensus 119 ~~s~AdvVf~N 129 (205)
T PF08123_consen 119 IWSDADVVFVN 129 (205)
T ss_dssp HGHC-SEEEE-
T ss_pred hhcCCCEEEEe
Confidence 11357999997
No 242
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=0.00034 Score=66.93 Aligned_cols=90 Identities=22% Similarity=0.436 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
.|++.+++.+ ...+++..+|.--|.|..+..+...+++.++++|+|.++.|++.|++.+..++ +++.++++++.
T Consensus 10 VLl~E~i~~L----~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~ 83 (314)
T COG0275 10 VLLNEVVELL----APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFA 83 (314)
T ss_pred hHHHHHHHhc----ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHH
Confidence 4556666665 34456899999999999999999998667789999999999999999987765 67999999874
Q ss_pred cccc---cC-CCceeEEEEc
Q 017476 258 GKLK---DV-EGKLSGVVSN 273 (371)
Q Consensus 258 ~~l~---~~-~~~fDlIvsN 273 (371)
+... .. .+++|.|+.+
T Consensus 84 ~l~~~l~~~~i~~vDGiL~D 103 (314)
T COG0275 84 NLAEALKELGIGKVDGILLD 103 (314)
T ss_pred HHHHHHHhcCCCceeEEEEe
Confidence 4211 11 3567777664
No 243
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.90 E-value=0.0017 Score=59.81 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (371)
Q Consensus 177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~ 256 (371)
..|...++.-+ ......++.+||-||..+|...-.++.-.++.+.|+|||.|+......-.-+++. .+|-.+.+|.
T Consensus 56 SKLaAai~~Gl-~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DA 131 (229)
T PF01269_consen 56 SKLAAAILKGL-ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDA 131 (229)
T ss_dssp -HHHHHHHTT--S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-T
T ss_pred hHHHHHHHcCc-cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccC
Confidence 34555554443 2223456789999999999999999998877899999999996654433222222 3488889998
Q ss_pred cccccc--CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC----
Q 017476 257 FGKLKD--VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN---- 330 (371)
Q Consensus 257 ~~~l~~--~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~---- 330 (371)
..+... .-+.+|+|+++=. .| +..+-++.++..+||+||.+++.+.
T Consensus 132 r~P~~Y~~lv~~VDvI~~DVa-----------------Qp-----------~Qa~I~~~Na~~fLk~gG~~~i~iKa~si 183 (229)
T PF01269_consen 132 RHPEKYRMLVEMVDVIFQDVA-----------------QP-----------DQARIAALNARHFLKPGGHLIISIKARSI 183 (229)
T ss_dssp TSGGGGTTTS--EEEEEEE-S-----------------ST-----------THHHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred CChHHhhcccccccEEEecCC-----------------Ch-----------HHHHHHHHHHHhhccCCcEEEEEEecCcc
Confidence 766432 2468999998411 11 1233567788889999999998762
Q ss_pred -C-cCcHHHHHHHHhccccCCceeEEEE
Q 017476 331 -G-EKQCKFLKNYLENDSACSFCNVSIV 356 (371)
Q Consensus 331 -~-~~q~~~v~~~l~~~~~~gf~~v~~~ 356 (371)
. ....+.+.+..+.....+|.-++..
T Consensus 184 D~t~~p~~vf~~e~~~L~~~~~~~~e~i 211 (229)
T PF01269_consen 184 DSTADPEEVFAEEVKKLKEEGFKPLEQI 211 (229)
T ss_dssp -SSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHcCCChheEe
Confidence 1 1222223333333334678665544
No 244
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.88 E-value=4.2e-05 Score=68.63 Aligned_cols=73 Identities=26% Similarity=0.453 Sum_probs=62.7
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVV 271 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIv 271 (371)
+...+++|||+|+|+|..+++.++. ....|++.|+.+.....++.|++.||.. +.+...|... . +..||+|+
T Consensus 76 etVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~--~~~~Dl~L 147 (218)
T COG3897 76 ETVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--S--PPAFDLLL 147 (218)
T ss_pred cccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--C--CcceeEEE
Confidence 4557889999999999999999986 4578999999999999999999999965 8999988754 2 36899998
Q ss_pred E
Q 017476 272 S 272 (371)
Q Consensus 272 s 272 (371)
.
T Consensus 148 a 148 (218)
T COG3897 148 A 148 (218)
T ss_pred e
Confidence 7
No 245
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=2.2e-05 Score=68.30 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC--CcEE
Q 017476 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ--DIIE 250 (371)
Q Consensus 174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~--~~v~ 250 (371)
|..|.+.-.+++.. ....+.+||++|.| +|.-++.+|... +...|...|-+.++++..++-...+-.. .++.
T Consensus 12 pseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~ 86 (201)
T KOG3201|consen 12 PSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC 86 (201)
T ss_pred ccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccccccceeh
Confidence 44566666555433 33456799999999 566677777764 7889999999999998887766555221 1233
Q ss_pred EEEcCccccccc-CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 251 IRQGSWFGKLKD-VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 251 ~~~gD~~~~l~~-~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.+.-++...-.. ....||+|++ .+..-| -+.-..+++.+..+|+|.|..++-.
T Consensus 87 vlrw~~~~aqsq~eq~tFDiIla--------------ADClFf------------dE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 87 VLRWLIWGAQSQQEQHTFDIILA--------------ADCLFF------------DEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred hhHHHHhhhHHHHhhCcccEEEe--------------ccchhH------------HHHHHHHHHHHHHHhCcccceeEec
Confidence 333333322111 1248999998 112111 1223467888899999999977766
Q ss_pred CCcCcHHHHHHHHhccccCCceeEEEEec
Q 017476 330 NGEKQCKFLKNYLENDSACSFCNVSIVSD 358 (371)
Q Consensus 330 ~~~~q~~~v~~~l~~~~~~gf~~v~~~~D 358 (371)
+ +.++.+.+++...+..|| .|.+..+
T Consensus 141 P--RRg~sL~kF~de~~~~gf-~v~l~en 166 (201)
T KOG3201|consen 141 P--RRGQSLQKFLDEVGTVGF-TVCLEEN 166 (201)
T ss_pred C--cccchHHHHHHHHHhcee-EEEeccc
Confidence 3 455666666665555777 3444443
No 246
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.77 E-value=0.00013 Score=70.62 Aligned_cols=90 Identities=21% Similarity=0.365 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
.|.+.+++.+ ...+++.++|.-+|.|..+..+++.+ ++++|+|+|.++.|++.|++++..+ .++++++++++.
T Consensus 7 Vll~Evl~~L----~~~~ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~ 79 (305)
T TIGR00006 7 VLLDEVVEGL----NIKPDGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFA 79 (305)
T ss_pred hhHHHHHHhc----CcCCCCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHH
Confidence 5667777766 23356799999999999999999987 4589999999999999999988755 467999999986
Q ss_pred cccccC----CCceeEEEEcC
Q 017476 258 GKLKDV----EGKLSGVVSNP 274 (371)
Q Consensus 258 ~~l~~~----~~~fDlIvsNP 274 (371)
+..... ..++|.|+.|-
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHhcCCCcccEEEEec
Confidence 532211 24688888874
No 247
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.76 E-value=8.6e-05 Score=74.10 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcCcccccccCCCceeEEEEcC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~-~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
+.++||.=+|||.=++..+.++....+|++-|+|+++++.+++|++.|++++ ++++.+.|....+......||+|=.+|
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 4589999999999999999996455689999999999999999999999988 799999998665432347899998763
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
|.. ...+++.|.+.++.||.|.+..
T Consensus 130 -fGS-----------------------------p~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 130 -FGS-----------------------------PAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -SS-------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCC-----------------------------ccHhHHHHHHHhhcCCEEEEec
Confidence 321 1268888889999999999975
No 248
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.70 E-value=0.00092 Score=63.97 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=56.4
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEcCCC
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPY 276 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPY 276 (371)
+++|++||.|.+...+.+. .-..|.++|+++.+++..+.|... .++.+|+.+..... .+.+|+|+..||+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhcCCCCCEEEeCCCC
Confidence 6999999999999888774 234688999999999999888631 15667765543221 3579999999999
Q ss_pred CCCCC
Q 017476 277 IPSDD 281 (371)
Q Consensus 277 i~~~~ 281 (371)
-+.+.
T Consensus 73 q~fS~ 77 (275)
T cd00315 73 QPFSI 77 (275)
T ss_pred hhhhH
Confidence 65433
No 249
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.64 E-value=0.00025 Score=66.28 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=69.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
....|.|+|||-+-++. . ...+|+..|+-.. +-+++..|+.+ ++-.+++.|++|+.
T Consensus 180 ~~~vIaD~GCGEakiA~---~---~~~kV~SfDL~a~----------------~~~V~~cDm~~-vPl~d~svDvaV~C- 235 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---S---ERHKVHSFDLVAV----------------NERVIACDMRN-VPLEDESVDVAVFC- 235 (325)
T ss_pred CceEEEecccchhhhhh---c---cccceeeeeeecC----------------CCceeeccccC-CcCccCcccEEEee-
Confidence 35689999999999886 2 2357999998541 14577788865 44446899998872
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCcee
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCN 352 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~ 352 (371)
++|.| ..+..++.+|.++|++||.+++---. .....+..+.+....-||..
T Consensus 236 ---------------------LSLMg-----tn~~df~kEa~RiLk~gG~l~IAEv~-SRf~dv~~f~r~l~~lGF~~ 286 (325)
T KOG3045|consen 236 ---------------------LSLMG-----TNLADFIKEANRILKPGGLLYIAEVK-SRFSDVKGFVRALTKLGFDV 286 (325)
T ss_pred ---------------------Hhhhc-----ccHHHHHHHHHHHhccCceEEEEehh-hhcccHHHHHHHHHHcCCee
Confidence 11111 23557899999999999999884312 22233333333322367854
No 250
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.59 E-value=0.00034 Score=64.02 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q 017476 175 ETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQG 254 (371)
Q Consensus 175 ~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~g 254 (371)
.+..+++|+.+............++||+||=+....+..... -.|+.||+++.- -.+.+.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~----fdvt~IDLns~~----------------~~I~qq 90 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGW----FDVTRIDLNSQH----------------PGILQQ 90 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCc----eeeEEeecCCCC----------------CCceee
Confidence 346677777765522112223469999999877666554333 469999998821 357788
Q ss_pred Ccccc-cc-cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcE-----EEE
Q 017476 255 SWFGK-LK-DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGF-----FAF 327 (371)
Q Consensus 255 D~~~~-l~-~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~-----lvl 327 (371)
|+++. ++ ...++||+|++ .-|..|-|....- -+++..+.++|+++|. |++
T Consensus 91 DFm~rplp~~~~e~FdvIs~--------------SLVLNfVP~p~~R---------G~Ml~r~~~fL~~~g~~~~~~LFl 147 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISL--------------SLVLNFVPDPKQR---------GEMLRRAHKFLKPPGLSLFPSLFL 147 (219)
T ss_pred ccccCCCCCCcccceeEEEE--------------EEEEeeCCCHHHH---------HHHHHHHHHHhCCCCccCcceEEE
Confidence 88773 33 22578999988 2234444433222 1688999999999999 888
Q ss_pred EEC-------CcCcHHHHHHHHhccccCCceeEEEEe
Q 017476 328 ETN-------GEKQCKFLKNYLENDSACSFCNVSIVS 357 (371)
Q Consensus 328 e~~-------~~~q~~~v~~~l~~~~~~gf~~v~~~~ 357 (371)
..+ .+-..+.+..+|.. -||..++...
T Consensus 148 VlP~~Cv~NSRy~~~~~l~~im~~---LGf~~~~~~~ 181 (219)
T PF11968_consen 148 VLPLPCVTNSRYMTEERLREIMES---LGFTRVKYKK 181 (219)
T ss_pred EeCchHhhcccccCHHHHHHHHHh---CCcEEEEEEe
Confidence 764 23345677888886 6898887643
No 251
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.48 E-value=0.0022 Score=52.08 Aligned_cols=102 Identities=25% Similarity=0.316 Sum_probs=66.4
Q ss_pred EEEECCcccHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-cccCC-CceeEEEEcCC
Q 017476 199 WVDLGTGSGAIAIGIARVLGSK-GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVE-GKLSGVVSNPP 275 (371)
Q Consensus 199 VLDlG~GsG~~al~la~~~~~~-~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-l~~~~-~~fDlIvsNPP 275 (371)
++|+|||+|... .++... .. ..++|+|+++.++..++.+....+.. .+.+..+|.... ..... ..||++.+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLG-GRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhC-CCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999977 444432 22 48999999999999855554332211 167888887652 33222 37999844221
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
.. +. . ....+..+.+.|+++|.+++...
T Consensus 129 ~~--------------~~------------~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 129 LH--------------LL------------P-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hh--------------cC------------C-HHHHHHHHHHhcCCCcEEEEEec
Confidence 11 00 0 23677788899999999988774
No 252
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.45 E-value=0.0004 Score=62.77 Aligned_cols=128 Identities=20% Similarity=0.247 Sum_probs=81.8
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEcCcccccccC--CCcee
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG------LQDIIEIRQGSWFGKLKDV--EGKLS 268 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g------l~~~v~~~~gD~~~~l~~~--~~~fD 268 (371)
-.+.|||||-|.+.+.++-.+ |+.-+.|+||-....++.+..++..+ .-.++.++..+.+..++.. .++.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 469999999999999999987 89999999999999998888887664 2234788888877766543 23333
Q ss_pred EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE 343 (371)
Q Consensus 269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~ 343 (371)
-++.--| + .+... ..|.-++ ....++....-.|++||.++..+.-....+.+...++
T Consensus 141 kmff~fp-----d-pHfk~--~khk~ri----------i~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e 197 (249)
T KOG3115|consen 141 KMFFLFP-----D-PHFKA--RKHKWRI----------ITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLE 197 (249)
T ss_pred cceeecC-----C-hhHhh--hhcccee----------echhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHH
Confidence 2222101 0 00000 0111111 1225666667789999999998854344444444444
No 253
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.45 E-value=0.0013 Score=62.23 Aligned_cols=138 Identities=18% Similarity=0.217 Sum_probs=82.0
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-------------C-------------
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL-------------Q------------- 246 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl-------------~------------- 246 (371)
..++.++||+|||.-..-+.-|..+ -.+|+..|..+..++..++-++.-+- +
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~--f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEW--FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGT--EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHh--hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 3456799999999865433323221 25799999999988876665433211 0
Q ss_pred -CcE-EEEEcCcccccc--c---CCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccc
Q 017476 247 -DII-EIRQGSWFGKLK--D---VEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASML 319 (371)
Q Consensus 247 -~~v-~~~~gD~~~~l~--~---~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~L 319 (371)
..| +++..|..+.-+ . ...+||+|++- --+... -.-++.|+..+++..++|
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~---------fcLE~a-------------~~d~~~y~~al~ni~~lL 189 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISS---------FCLESA-------------CKDLDEYRRALRNISSLL 189 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEE---------SSHHHH--------------SSHHHHHHHHHHHHTTE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhh---------HHHHHH-------------cCCHHHHHHHHHHHHHHc
Confidence 113 377788766322 1 12359999881 111111 112678999999999999
Q ss_pred ccCcEEEEEEC---------C------cCcHHHHHHHHhccccCCceeEEEEe
Q 017476 320 KPGGFFAFETN---------G------EKQCKFLKNYLENDSACSFCNVSIVS 357 (371)
Q Consensus 320 kpgG~lvle~~---------~------~~q~~~v~~~l~~~~~~gf~~v~~~~ 357 (371)
||||.|++... + .-..+.|++.+++ .||.-++..+
T Consensus 190 kpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~---aG~~i~~~~~ 239 (256)
T PF01234_consen 190 KPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEE---AGFDIEDLEK 239 (256)
T ss_dssp EEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHH---TTEEEEEEEG
T ss_pred CCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHH---cCCEEEeccc
Confidence 99999998431 1 1246778888886 7896665554
No 254
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00096 Score=65.44 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=80.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
+.+|+|.-+|||.=++..|.+. +..+|+.-|+||+|++.+++|++.|...+ ...+..|....+......||+|=.+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~-~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDP- 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET-GVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDP- 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhc-CccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCC-
Confidence 5699999999999999999996 44599999999999999999999995444 56666887665554457899887653
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
|... -.+++.|.+.++.||.+.+..
T Consensus 130 FGSP-----------------------------aPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 130 FGSP-----------------------------APFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCC-----------------------------chHHHHHHHHhhcCCEEEEEe
Confidence 3221 157777888889999999864
No 255
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=97.43 E-value=0.00043 Score=56.64 Aligned_cols=65 Identities=28% Similarity=0.449 Sum_probs=45.5
Q ss_pred ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-----CcCcHHHHHH
Q 017476 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-----GEKQCKFLKN 340 (371)
Q Consensus 266 ~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-----~~~q~~~v~~ 340 (371)
+||+||.||||+............ ....+.|..+++.+.++| +|.+.+.++ ....+..+++
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~------------~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~ 67 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKK------------KKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRK 67 (106)
T ss_pred CcCEEEECCCChhhccccchhhcc------------cccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHH
Confidence 699999999999765432211110 114678889999999988 999988774 2345677788
Q ss_pred HHhc
Q 017476 341 YLEN 344 (371)
Q Consensus 341 ~l~~ 344 (371)
.+.+
T Consensus 68 ~l~~ 71 (106)
T PF07669_consen 68 FLLN 71 (106)
T ss_pred HHhc
Confidence 8764
No 256
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0014 Score=59.77 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=78.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CCceeEEEEc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EGKLSGVVSN 273 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~~fDlIvsN 273 (371)
++++||.+|-|-|.+.-.+-.+ .| .+=+-+|.+++.++..+++.-.. .++|.++.|-|.+.++.+ ++.||.|.-+
T Consensus 101 kggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred CCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhccccc--ccceEEEecchHhhhccccccCcceeEee
Confidence 5779999999999998888765 34 45566899999998887764322 346999999998766544 5679999863
Q ss_pred CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 274 PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 274 PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.|.| -.++++++.+.+.++|||+|++-+-.
T Consensus 177 -----------------Ty~e---------~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 177 -----------------TYSE---------LYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred -----------------chhh---------HHHHHHHHHHHHhhhcCCCceEEEec
Confidence 1111 13566788889999999999987765
No 257
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.36 E-value=0.0002 Score=65.34 Aligned_cols=136 Identities=19% Similarity=0.278 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 017476 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIE 250 (371)
Q Consensus 174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~---~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~ 250 (371)
|..-...+.++-.+ +|..|+++|+-.|.-++..|.. +++.++|+|||++........ .+.+.+.++|+
T Consensus 18 P~Dm~~~qeli~~~-------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI~ 88 (206)
T PF04989_consen 18 PQDMVAYQELIWEL-------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRIT 88 (206)
T ss_dssp HHHHHHHHHHHHHH---------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTEE
T ss_pred HHHHHHHHHHHHHh-------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCceE
Confidence 44444445554444 4779999999999988887754 346789999999654432221 22344567899
Q ss_pred EEEcCccccc-----ccC--CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc
Q 017476 251 IRQGSWFGKL-----KDV--EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG 323 (371)
Q Consensus 251 ~~~gD~~~~l-----~~~--~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (371)
+++||..+.- ... .....+|+-+ -++ -.+.....++.-..++++|+
T Consensus 89 ~i~Gds~d~~~~~~v~~~~~~~~~vlVilD--------s~H-------------------~~~hvl~eL~~y~plv~~G~ 141 (206)
T PF04989_consen 89 FIQGDSIDPEIVDQVRELASPPHPVLVILD--------SSH-------------------THEHVLAELEAYAPLVSPGS 141 (206)
T ss_dssp EEES-SSSTHHHHTSGSS----SSEEEEES--------S-----------------------SSHHHHHHHHHHT--TT-
T ss_pred EEECCCCCHHHHHHHHHhhccCCceEEEEC--------CCc-------------------cHHHHHHHHHHhCccCCCCC
Confidence 9999986531 111 1233355431 111 11222345555678999999
Q ss_pred EEEEEEC-----------------CcCcHHHHHHHHhcc
Q 017476 324 FFAFETN-----------------GEKQCKFLKNYLEND 345 (371)
Q Consensus 324 ~lvle~~-----------------~~~q~~~v~~~l~~~ 345 (371)
++++|-. |.....++.++|++.
T Consensus 142 Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~ 180 (206)
T PF04989_consen 142 YLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEH 180 (206)
T ss_dssp EEEETSHHHHHHHHS-------------HHHHHHHHHTT
T ss_pred EEEEEeccccccccccccccchhhhhHHHHHHHHHHHHC
Confidence 9999632 234567788999874
No 258
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.35 E-value=0.00032 Score=64.54 Aligned_cols=111 Identities=17% Similarity=0.082 Sum_probs=72.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
...++|+|||-|++...+..+ .-.+++-+|.|-.|++.++.. +..++. +....+|- +.+...+.++|+|++.--
T Consensus 73 fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i~--~~~~v~DE-E~Ldf~ens~DLiisSls 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSIE--TSYFVGDE-EFLDFKENSVDLIISSLS 146 (325)
T ss_pred CcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCceE--EEEEecch-hcccccccchhhhhhhhh
Confidence 348999999999999998876 356899999999999987753 222322 45555663 344444578999998544
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHH
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFL 338 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v 338 (371)
-.+.++++ ..+.++...|||+|.++-.+-|.+...++
T Consensus 147 lHW~NdLP--------------------------g~m~~ck~~lKPDg~FiasmlggdTLyEL 183 (325)
T KOG2940|consen 147 LHWTNDLP--------------------------GSMIQCKLALKPDGLFIASMLGGDTLYEL 183 (325)
T ss_pred hhhhccCc--------------------------hHHHHHHHhcCCCccchhHHhccccHHHH
Confidence 33333322 34455667777777776655443433333
No 259
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.0042 Score=61.03 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=102.3
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc--cc------
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG--KL------ 260 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~---~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~--~l------ 260 (371)
+..++.+|||+|+..|.=++.+.+.+.. .+.|++-|.+..-+......+.+...+ .+.+...|... ..
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCc
Confidence 3446789999999999988888776532 248999999999888887777544332 23333333211 01
Q ss_pred ccCCCceeEEEEcCCCCCCCCcccchhhhcccCc-cccccCCCCcHHHHH-HHHHHHhcccccCcEEEEEEC---CcCcH
Q 017476 261 KDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEP-RLALDGGVDGLDYLL-HLCNGTASMLKPGGFFAFETN---GEKQC 335 (371)
Q Consensus 261 ~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep-~~aL~gg~dGl~~~~-~il~~a~~~LkpgG~lvle~~---~~~q~ 335 (371)
......||-|+++=|+...+.+..-+ .-+.. ..... .-||-.++ .|+..+.+.||+||.++..+- .....
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~---~i~~~~w~~~~--~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE 305 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNP---NIWKEGWKTQR--ALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE 305 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCc---hHhhhhhhhhh--ccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhH
Confidence 01124799999999987543322111 11111 11111 12344443 688999999999999999873 33333
Q ss_pred HHHHHHHhccccCCceeEEEEecCCCCceE
Q 017476 336 KFLKNYLENDSACSFCNVSIVSDFAGIQRF 365 (371)
Q Consensus 336 ~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~ 365 (371)
.-|.++++.. .+.|.-+....|+.+..|.
T Consensus 306 aVV~~~L~~~-~~~~~lv~~~~~lp~l~r~ 334 (375)
T KOG2198|consen 306 AVVQEALQKV-GGAVELVDVSGDLPGLKRM 334 (375)
T ss_pred HHHHHHHHHh-cCcccceeeccccccceec
Confidence 4455666654 3556666666777776654
No 260
>PRK11524 putative methyltransferase; Provisional
Probab=97.34 E-value=0.00051 Score=66.02 Aligned_cols=84 Identities=19% Similarity=0.302 Sum_probs=52.5
Q ss_pred EEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 249 v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
.+++++|..+.+... +++||+|++||||-.......... .+ . ..+-++.+..++..+.++||+||.+++
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~---~~------~-~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIE---AW------K-EDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccc---cc------c-HHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 578999988754332 468999999999964211110000 00 0 011134456899999999999999999
Q ss_pred EECCcCcHHHHHHHHh
Q 017476 328 ETNGEKQCKFLKNYLE 343 (371)
Q Consensus 328 e~~~~~q~~~v~~~l~ 343 (371)
.+ +......+..++.
T Consensus 79 ~~-~~~~~~~~~~~~~ 93 (284)
T PRK11524 79 MN-STENMPFIDLYCR 93 (284)
T ss_pred Ec-CchhhhHHHHHHh
Confidence 87 4444444444444
No 261
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.32 E-value=0.0029 Score=60.20 Aligned_cols=129 Identities=17% Similarity=0.258 Sum_probs=83.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC----------------------------C-
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG----------------------------L- 245 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g----------------------------l- 245 (371)
.+.+||-.|||-|.++..+|.. +..+.|.|.|--|+-...--+.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 4579999999999999999995 5799999999998644333211100 0
Q ss_pred ----------CCcEEEEEcCcccccccC--CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHH
Q 017476 246 ----------QDIIEIRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCN 313 (371)
Q Consensus 246 ----------~~~v~~~~gD~~~~l~~~--~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~ 313 (371)
..++....||+.+..... .++||.|++. =|| |-...+-..++
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~-FFI-------------------------DTA~Ni~~Yi~ 186 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC-FFI-------------------------DTAENIIEYIE 186 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE-EEe-------------------------echHHHHHHHH
Confidence 123556667766543332 3678888874 111 11234556778
Q ss_pred HHhcccccCcEEEEEECC-----c-----------CcHHHHHHHHhccccCCceeEEEE
Q 017476 314 GTASMLKPGGFFAFETNG-----E-----------KQCKFLKNYLENDSACSFCNVSIV 356 (371)
Q Consensus 314 ~a~~~LkpgG~lvle~~~-----~-----------~q~~~v~~~l~~~~~~gf~~v~~~ 356 (371)
.+.++|||||.+ +..++ . -..+++..++++ -||..++..
T Consensus 187 tI~~lLkpgG~W-IN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~---~GF~~~~~~ 241 (270)
T PF07942_consen 187 TIEHLLKPGGYW-INFGPLLYHFEPMSIPNEMSVELSLEEIKELIEK---LGFEIEKEE 241 (270)
T ss_pred HHHHHhccCCEE-EecCCccccCCCCCCCCCcccCCCHHHHHHHHHH---CCCEEEEEE
Confidence 888999999954 33320 1 135778888875 689765443
No 262
>PRK13699 putative methylase; Provisional
Probab=97.21 E-value=0.0013 Score=61.10 Aligned_cols=88 Identities=16% Similarity=0.262 Sum_probs=57.2
Q ss_pred EEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 249 v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
.+++++|..+.+..+ ++++|+||.+|||.-... .+.-. . ..+.+..+.+..++.++.++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~---------~~~~~-~-~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFR---------DRQGR-T-IAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccc---------cCCCc-c-cccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 367889987754433 578999999999953100 00000 0 11223346677899999999999999988
Q ss_pred EECCcCcHHHHHHHHhccccCCce
Q 017476 328 ETNGEKQCKFLKNYLENDSACSFC 351 (371)
Q Consensus 328 e~~~~~q~~~v~~~l~~~~~~gf~ 351 (371)
-+ +..+...+...+++ .||.
T Consensus 71 f~-~~~~~~~~~~al~~---~GF~ 90 (227)
T PRK13699 71 FY-GWNRVDRFMAAWKN---AGFS 90 (227)
T ss_pred Ee-ccccHHHHHHHHHH---CCCE
Confidence 76 44555556666664 5675
No 263
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.99 E-value=0.002 Score=62.82 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=73.3
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCC
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPY 276 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPY 276 (371)
...+|+|.|.|.++-.+...+ | +|-+++.+...+-.++.+.. .| |+.+.||++...+ +-|+|+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P----~~daI~m---- 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP----KGDAIWM---- 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC----CcCeEEE----
Confidence 589999999999999999875 4 48888888887777777664 44 8899999998754 3468876
Q ss_pred CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.-+..| -+-+...+|++++++.|+|||.+++.-
T Consensus 243 ----------kWiLhd----------wtDedcvkiLknC~~sL~~~GkIiv~E 275 (342)
T KOG3178|consen 243 ----------KWILHD----------WTDEDCVKILKNCKKSLPPGGKIIVVE 275 (342)
T ss_pred ----------Eeeccc----------CChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 112121 123556689999999999999988743
No 264
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.98 E-value=0.011 Score=57.88 Aligned_cols=68 Identities=21% Similarity=0.165 Sum_probs=52.2
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSN 273 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN 273 (371)
.++.++||+||++|.++..+.+. +.+|+|||..+-+ .++.. .++|..+++|.+...+. .+.+|.+||+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~p~-~~~vDwvVcD 277 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFRPP-RKNVDWLVCD 277 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccCCC-CCCCCEEEEe
Confidence 46789999999999999999985 5699999966522 11211 34699999998887653 4689999994
No 265
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=96.94 E-value=0.0091 Score=56.53 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=90.2
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEE
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGV 270 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlI 270 (371)
....++.|+-+| -.-..+++++-. +-..+|..|||++..++...+-++..|+.+ ++.+.-|+.++++. ..++||++
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCee
Confidence 455678899998 445555555543 234589999999999999999999999865 99999999988864 35799999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccC---cEEEEEECC--cCcHHHHHHHHhc
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPG---GFFAFETNG--EKQCKFLKNYLEN 344 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkpg---G~lvle~~~--~~q~~~v~~~l~~ 344 (371)
+.+||+- ...++.|+......||.- |++.+..-. .+.-.++++++.+
T Consensus 226 iTDPpeT---------------------------i~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn 277 (354)
T COG1568 226 ITDPPET---------------------------IKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILIN 277 (354)
T ss_pred ecCchhh---------------------------HHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHH
Confidence 9999984 345667777777778766 777776532 2333456664443
No 266
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.93 E-value=0.024 Score=51.47 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (371)
Q Consensus 176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD 255 (371)
-..|...++.-+ ......++.+||=||..+|...-.++.-. +.+.++|||.|+....-.-.-++.. +++-.+.+|
T Consensus 58 RSKLaAaIl~Gl-~~~pi~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~D 132 (231)
T COG1889 58 RSKLAAAILKGL-KNFPIKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILED 132 (231)
T ss_pred hhHHHHHHHcCc-ccCCcCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhC---CCceeeecc
Confidence 345555565554 33345568899999999999999999976 5789999999998765443333322 347788888
Q ss_pred cccccc--cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC---
Q 017476 256 WFGKLK--DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN--- 330 (371)
Q Consensus 256 ~~~~l~--~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~--- 330 (371)
+..+.. ..-+..|+|+.+ +. .| +-.+-+..++...|++||.+++.+-
T Consensus 133 A~~P~~Y~~~Ve~VDviy~D--------VA---------Qp-----------~Qa~I~~~Na~~FLk~~G~~~i~iKArS 184 (231)
T COG1889 133 ARKPEKYRHLVEKVDVIYQD--------VA---------QP-----------NQAEILADNAEFFLKKGGYVVIAIKARS 184 (231)
T ss_pred cCCcHHhhhhcccccEEEEe--------cC---------Cc-----------hHHHHHHHHHHHhcccCCeEEEEEEeec
Confidence 866533 224579999873 11 11 1233577888999999997766541
Q ss_pred ---CcCcHHHHHHHHhccccCCceeEEE
Q 017476 331 ---GEKQCKFLKNYLENDSACSFCNVSI 355 (371)
Q Consensus 331 ---~~~q~~~v~~~l~~~~~~gf~~v~~ 355 (371)
..+..+-+++.+++...++|.-++.
T Consensus 185 IdvT~dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 185 IDVTADPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred ccccCCHHHHHHHHHHHHHhcCceeeEE
Confidence 1222222333444443477755444
No 267
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.92 E-value=0.00017 Score=65.27 Aligned_cols=93 Identities=19% Similarity=0.297 Sum_probs=61.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
.+.++||+|+|.|-++..++..+ .+|+|.|+|..|....++. +.. | +-.-+|.+. +-+||+|.|
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk----~yn--V-l~~~ew~~t----~~k~dli~c-- 175 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK----NYN--V-LTEIEWLQT----DVKLDLILC-- 175 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc----CCc--e-eeehhhhhc----CceeehHHH--
Confidence 46799999999999999998876 5799999999987755432 211 1 122233321 247999988
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhccccc-CcEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKP-GGFFAF 327 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lkp-gG~lvl 327 (371)
++-| .+.+.|- .+++.+...|+| +|.+++
T Consensus 176 -------lNlL---DRc~~p~--------------kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 176 -------LNLL---DRCFDPF--------------KLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred -------HHHH---HhhcChH--------------HHHHHHHHHhccCCCcEEE
Confidence 1111 1233332 577777888888 787765
No 268
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.86 E-value=0.0018 Score=64.37 Aligned_cols=105 Identities=26% Similarity=0.270 Sum_probs=78.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
++..++|+|||.|.....++.. ...+++|+|.++.-+..+..-....++.++..++.+|+..... .+..||++-++
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f-edn~fd~v~~l- 185 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF-EDNTFDGVRFL- 185 (364)
T ss_pred ccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC-CccccCcEEEE-
Confidence 3457999999999999999884 5789999999999888888777777777777777777766432 25789988872
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
++..|.|.. . ..++++.+.++|||.++.+
T Consensus 186 -------------d~~~~~~~~--------~----~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 186 -------------EVVCHAPDL--------E----KVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -------------eecccCCcH--------H----HHHHHHhcccCCCceEEeH
Confidence 333444432 2 5566677889999998874
No 269
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.80 E-value=0.008 Score=57.00 Aligned_cols=123 Identities=16% Similarity=0.186 Sum_probs=68.7
Q ss_pred CeEEEECCccc--HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-----------cC
Q 017476 197 GFWVDLGTGSG--AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----------DV 263 (371)
Q Consensus 197 ~~VLDlG~GsG--~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-----------~~ 263 (371)
..+||||||-- ...-.+|++..|+++|+=||.+|.++..++.-+..+. ..+..++++|+.++-. ++
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-RGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-TSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-CccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 37999999933 3455677777799999999999999999888765443 1348999999987521 11
Q ss_pred CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-c---HHHHH
Q 017476 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-Q---CKFLK 339 (371)
Q Consensus 264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q---~~~v~ 339 (371)
...+-+++. .+..|-|. -+....++......|.||.+|++.+...+ . .+.+.
T Consensus 149 ~rPVavll~---------------~vLh~v~D---------~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~ 204 (267)
T PF04672_consen 149 DRPVAVLLV---------------AVLHFVPD---------DDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALE 204 (267)
T ss_dssp TS--EEEEC---------------T-GGGS-C---------GCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHH
T ss_pred CCCeeeeee---------------eeeccCCC---------ccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHH
Confidence 222223332 22233221 12245788888899999999999885433 2 23344
Q ss_pred HHHhc
Q 017476 340 NYLEN 344 (371)
Q Consensus 340 ~~l~~ 344 (371)
+.+.+
T Consensus 205 ~~~~~ 209 (267)
T PF04672_consen 205 AVYAQ 209 (267)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 55543
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.78 E-value=0.0014 Score=66.69 Aligned_cols=126 Identities=19% Similarity=0.293 Sum_probs=69.6
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEE---eCCHHHHHHHHHHHHHc
Q 017476 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAV---DLNPLAAAVAAFNAQRY 243 (371)
Q Consensus 167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gv---Dis~~al~~A~~n~~~~ 243 (371)
.++.+|. ....+++.+.+.+........-..+||+|||+|.++..|..+ +..+..+ |..+..+..|.+ .
T Consensus 90 ggt~F~~-Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfale----R 161 (506)
T PF03141_consen 90 GGTMFPH-GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALE----R 161 (506)
T ss_pred CCccccC-CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhh----c
Confidence 3344444 334556666665521111112347999999999999999874 3333333 333334444432 3
Q ss_pred CCCCcEEEEEcCcccccccCCCceeEEEEc---CCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc
Q 017476 244 GLQDIIEIRQGSWFGKLKDVEGKLSGVVSN---PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK 320 (371)
Q Consensus 244 gl~~~v~~~~gD~~~~l~~~~~~fDlIvsN---PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk 320 (371)
|++.-+.++ + ..-++.+.+.||+|-|- =|++. .+| .++-++-++|+
T Consensus 162 Gvpa~~~~~-~--s~rLPfp~~~fDmvHcsrc~i~W~~-----------------------~~g-----~~l~evdRvLR 210 (506)
T PF03141_consen 162 GVPAMIGVL-G--SQRLPFPSNAFDMVHCSRCLIPWHP-----------------------NDG-----FLLFEVDRVLR 210 (506)
T ss_pred Ccchhhhhh-c--cccccCCccchhhhhcccccccchh-----------------------ccc-----ceeehhhhhhc
Confidence 544322111 1 13355556899999881 11111 112 24456679999
Q ss_pred cCcEEEEEECC
Q 017476 321 PGGFFAFETNG 331 (371)
Q Consensus 321 pgG~lvle~~~ 331 (371)
|||++++....
T Consensus 211 pGGyfv~S~pp 221 (506)
T PF03141_consen 211 PGGYFVLSGPP 221 (506)
T ss_pred cCceEEecCCc
Confidence 99999997754
No 271
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.77 E-value=0.0012 Score=63.90 Aligned_cols=90 Identities=22% Similarity=0.347 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc
Q 017476 178 LMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF 257 (371)
Q Consensus 178 ~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~ 257 (371)
.|++.+++.+ ...+++.++|.--|.|..+.++.+.+ ++++++|+|.+++|++.|++++... .+++.++++++-
T Consensus 7 Vll~Evl~~L----~~~~~g~~vD~T~G~GGHS~aiL~~~-~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~ 79 (310)
T PF01795_consen 7 VLLKEVLEAL----NPKPGGIYVDCTFGGGGHSKAILEKL-PNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFS 79 (310)
T ss_dssp TTHHHHHHHH----T--TT-EEEETT-TTSHHHHHHHHT--TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GG
T ss_pred ccHHHHHHhh----CcCCCceEEeecCCcHHHHHHHHHhC-CCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHH
Confidence 4566677766 23456799999999999999999987 5699999999999999999877644 578999999875
Q ss_pred ccc---cc--CCCceeEEEEcC
Q 017476 258 GKL---KD--VEGKLSGVVSNP 274 (371)
Q Consensus 258 ~~l---~~--~~~~fDlIvsNP 274 (371)
+.. .. ...++|.|+.+.
T Consensus 80 ~l~~~l~~~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 80 NLDEYLKELNGINKVDGILFDL 101 (310)
T ss_dssp GHHHHHHHTTTTS-EEEEEEE-
T ss_pred HHHHHHHHccCCCccCEEEEcc
Confidence 421 11 135799998864
No 272
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.74 E-value=0.012 Score=56.69 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=53.1
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-CCCceeEEEEcCCC
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-VEGKLSGVVSNPPY 276 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-~~~~fDlIvsNPPY 276 (371)
+++||+||.|.+.+.+.+. .-..+.++|+++.+.+.-+.|.. ....+|..+.... ..+.+|+++.-||+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggpPC 71 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGPPC 71 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE---
T ss_pred cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEeccCC
Confidence 6999999999999999885 23478999999999999999863 6778887653221 11159999999998
Q ss_pred CCCCC
Q 017476 277 IPSDD 281 (371)
Q Consensus 277 i~~~~ 281 (371)
-+-+.
T Consensus 72 Q~fS~ 76 (335)
T PF00145_consen 72 QGFSI 76 (335)
T ss_dssp TTTST
T ss_pred ceEec
Confidence 76544
No 273
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.0045 Score=53.39 Aligned_cols=80 Identities=33% Similarity=0.467 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q 017476 174 PETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ 253 (371)
Q Consensus 174 p~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~ 253 (371)
|.|-.-++.++..+ . ..+.++.+|+|+|.|.+-++.++. .--..+|+|+++-.+.+++-.+-+.|+..+..|..
T Consensus 55 pAtteQv~nVLSll-~---~n~~GklvDlGSGDGRiVlaaar~--g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~R 128 (199)
T KOG4058|consen 55 PATTEQVENVLSLL-R---GNPKGKLVDLGSGDGRIVLAAARC--GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRR 128 (199)
T ss_pred CccHHHHHHHHHHc-c---CCCCCcEEeccCCCceeehhhhhh--CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhh
Confidence 34444556666666 2 224568999999999999999986 23578999999999999999999999988899999
Q ss_pred cCcccc
Q 017476 254 GSWFGK 259 (371)
Q Consensus 254 gD~~~~ 259 (371)
-|.++.
T Consensus 129 kdlwK~ 134 (199)
T KOG4058|consen 129 KDLWKV 134 (199)
T ss_pred hhhhhc
Confidence 998864
No 274
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.65 E-value=0.0057 Score=55.54 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
|.+-...|++.++... . .++..|||..||||..++++.+. +-+.+|+|++++.+++|++
T Consensus 173 ~~~kP~~l~~~lI~~~-t----~~gdiVlDpF~GSGTT~~aa~~l---~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAS-T----NPGDIVLDPFAGSGTTAVAAEEL---GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHH-S-----TT-EEEETT-TTTHHHHHHHHT---T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhh-h----ccceeeehhhhccChHHHHHHHc---CCeEEEEeCCHHHHHHhcC
Confidence 5555567777777665 2 24679999999999999988773 5789999999999999875
No 275
>PRK11524 putative methyltransferase; Provisional
Probab=96.61 E-value=0.0072 Score=58.05 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=49.4
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 017476 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (371)
Q Consensus 172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~ 241 (371)
|.+--+.|++.++... ..++..|||..+|||..++++.+. +-+.+|+|++++.+++|++.+.
T Consensus 190 Pt~kP~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 190 PTQKPEALLKRIILAS-----SNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred cccChHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHH
Confidence 3344466777777655 235779999999999999988774 5789999999999999999875
No 276
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.60 E-value=0.0091 Score=55.64 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=49.6
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH---HcCC-----CCcEEEEEcCcccccccCCCcee
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ---RYGL-----QDIIEIRQGSWFGKLKDVEGKLS 268 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~---~~gl-----~~~v~~~~gD~~~~l~~~~~~fD 268 (371)
.+|||.-+|-|.-++.+|. + +.+|+++|-|+-...+.+.-++ ...- ..+++++++|..+.+......||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~-~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLAS-L--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHH-H--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred CEEEECCCcchHHHHHHHc-c--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence 3899999999999999986 4 5789999999977666554333 2211 14799999999888774467999
Q ss_pred EEEEcCCCCC
Q 017476 269 GVVSNPPYIP 278 (371)
Q Consensus 269 lIvsNPPYi~ 278 (371)
+|..+|-|-.
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999999864
No 277
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.0022 Score=64.94 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=85.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---ccCCCceeEEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---KDVEGKLSGVV 271 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---~~~~~~fDlIv 271 (371)
++.+|||--++||.-++..|+++..-.+|++-|.++.+++..++|++.++.++.++..++|+.... ......||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 356899999999999999999985555899999999999999999999999988999999874321 11236899998
Q ss_pred EcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 272 SNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 272 sNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.+ ||... ..|++.|.+.++.||.|++..
T Consensus 189 LD-PyGs~-----------------------------s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LD-PYGSP-----------------------------SPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cC-CCCCc-----------------------------cHHHHHHHHHhhcCCEEEEEe
Confidence 76 34321 157888889999999999965
No 278
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=96.48 E-value=0.067 Score=47.35 Aligned_cols=138 Identities=14% Similarity=0.177 Sum_probs=79.5
Q ss_pred ECCcccHHHHHHHHHhCCCcEEEEEeCCHH--HHHH---HHHHHHHcCCCCcEEEE-EcCccccccc---CCCceeEEEE
Q 017476 202 LGTGSGAIAIGIARVLGSKGSIIAVDLNPL--AAAV---AAFNAQRYGLQDIIEIR-QGSWFGKLKD---VEGKLSGVVS 272 (371)
Q Consensus 202 lG~GsG~~al~la~~~~~~~~V~gvDis~~--al~~---A~~n~~~~gl~~~v~~~-~gD~~~~l~~---~~~~fDlIvs 272 (371)
+|=|.=.++++|++.++...+++|.-.+.+ ..+. +..|++...-.+ +.++ ..|+.+.... ..++||.||-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCcccccccccCCcCCEEEE
Confidence 455555788888888744667777655443 3322 346666553222 3333 3355432221 1468999999
Q ss_pred cCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC--cHHHHHHHHhccccCCc
Q 017476 273 NPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK--QCKFLKNYLENDSACSF 350 (371)
Q Consensus 273 NPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~--q~~~v~~~l~~~~~~gf 350 (371)
|-|...... ..-...+..+ -..+..+++.|.++|+++|.+.+.+.... ..-.+.++-+. .||
T Consensus 82 NFPH~G~~~-~~~~~~i~~n------------r~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~---~gl 145 (166)
T PF10354_consen 82 NFPHVGGGS-EDGKRNIRLN------------RELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAE---AGL 145 (166)
T ss_pred eCCCCCCCc-cchhHHHHHH------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHh---cCC
Confidence 999875111 1111112111 35677999999999999999999884221 12244444443 778
Q ss_pred eeEEEE
Q 017476 351 CNVSIV 356 (371)
Q Consensus 351 ~~v~~~ 356 (371)
.-++..
T Consensus 146 ~l~~~~ 151 (166)
T PF10354_consen 146 VLVRKV 151 (166)
T ss_pred EEEEEe
Confidence 665543
No 279
>PRK13699 putative methylase; Provisional
Probab=96.44 E-value=0.01 Score=55.23 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=49.9
Q ss_pred ccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcC
Q 017476 172 PRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYG 244 (371)
Q Consensus 172 Prp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~g 244 (371)
|.+--..|++.++... . .++..|||..||||..+++..+. +.+.+|+|++++..+.|.+.++...
T Consensus 145 p~~kP~~l~~~~i~~~-s----~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 145 PTEKPVTSLQPLIESF-T----HPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCcHHHHHHHHHHh-C----CCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 4444456666666554 1 24679999999999999988773 5689999999999999999887643
No 280
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.023 Score=52.80 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=65.9
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--cCCCceeEE
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGV 270 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~~~~~fDlI 270 (371)
..++..+||+|+-||.++..+.++ ...+|+|+|.....+.+--+| ..|+..++.--...+. ...+..|++
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~~~~~d~~ 148 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDFTEKPDLI 148 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHHHcccCCCeE
Confidence 346789999999999999999985 567999999998777653332 3456555542222222 123578999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
+++--||+ +..++..+...++++|.++.
T Consensus 149 v~DvSFIS-----------------------------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 149 VIDVSFIS-----------------------------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred EEEeehhh-----------------------------HHHHHHHHHHhcCCCceEEE
Confidence 99655553 22456666677777776665
No 281
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.31 E-value=0.01 Score=60.69 Aligned_cols=75 Identities=19% Similarity=0.097 Sum_probs=56.5
Q ss_pred CCeEEEECCcccHHHHHH---HHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 196 DGFWVDLGTGSGAIAIGI---ARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~l---a~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
..+|+-+|.|-|-+.-.. |+......++++||.+|.|+-..+. .......++|+++.+|+.+.-+. .++.|++||
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-REQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-hhhccchHH
Confidence 457899999999765444 3333356789999999999865544 55556778999999999775432 478999997
No 282
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.29 E-value=0.0066 Score=60.73 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=51.2
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCc
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSW 256 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~ 256 (371)
..|||+|+|||.++..++++ ..-.|+|+|.-..|.+.|++-..++|..++|+++.-.-
T Consensus 68 v~vLdigtGTGLLSmMAvra--gaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrS 125 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRA--GADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRS 125 (636)
T ss_pred EEEEEccCCccHHHHHHHHh--cCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccc
Confidence 36999999999999999987 34579999999999999999999999999998886543
No 283
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.27 E-value=0.033 Score=59.73 Aligned_cols=141 Identities=19% Similarity=0.284 Sum_probs=87.1
Q ss_pred CCeEEEECCcccHHHHHHHHHh------CC-----CcEEEEEeCCH---HHHHHHH-----------HHHHH-----cCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVL------GS-----KGSIIAVDLNP---LAAAVAA-----------FNAQR-----YGL 245 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~------~~-----~~~V~gvDis~---~al~~A~-----------~n~~~-----~gl 245 (371)
.-+|+|+|-|+|...+...+.+ .+ ..+++++|..| +.+..+. +-... .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999777776554 12 34899999755 3332222 11111 122
Q ss_pred ------CC--cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhc
Q 017476 246 ------QD--IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTAS 317 (371)
Q Consensus 246 ------~~--~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~ 317 (371)
.+ +++++.||+.+.++.+..++|+|+.++ |.|... ++. | -..++....+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~n-----p~~--W---------------~~~~~~~l~~ 194 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKN-----PDM--W---------------SPNLFNALAR 194 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccC-----hhh--c---------------cHHHHHHHHH
Confidence 11 356788998877766556799999873 332221 222 1 1267788889
Q ss_pred ccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCce-EEEE
Q 017476 318 MLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQR-FVTG 368 (371)
Q Consensus 318 ~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R-~~~a 368 (371)
++++||.++=-+ .+..|++-|.+ .|| .|+..+-+ |.+| .+.|
T Consensus 195 ~~~~~~~~~t~t----~a~~vr~~l~~---~GF-~v~~~~~~-g~kr~~~~~ 237 (662)
T PRK01747 195 LARPGATLATFT----SAGFVRRGLQE---AGF-TVRKVKGF-GRKREMLVG 237 (662)
T ss_pred HhCCCCEEEEee----hHHHHHHHHHH---cCC-eeeecCCC-chhhhhhhe
Confidence 999999988444 56778888886 789 44444433 3444 4433
No 284
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.22 E-value=0.065 Score=48.45 Aligned_cols=114 Identities=19% Similarity=0.143 Sum_probs=67.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHH----HHHHHHHHHH--cCCCCcEEEEEcCcccccccCCCcee
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLA----AAVAAFNAQR--YGLQDIIEIRQGSWFGKLKDVEGKLS 268 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~a----l~~A~~n~~~--~gl~~~v~~~~gD~~~~l~~~~~~fD 268 (371)
++.+|+|+--|.|.++..++...++.+.|+++=-.+.. ....+.|... .... +++.+-.+..... ..+..|
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~--~pq~~d 124 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG--APQKLD 124 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC--CCCccc
Confidence 46799999999999999999988888899887544431 1112222211 1112 2444444433322 135677
Q ss_pred EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
++..|-=|+... .....+ .....+...+.+.|||||.+++|-+
T Consensus 125 ~~~~~~~yhdmh---------------~k~i~~----~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 125 LVPTAQNYHDMH---------------NKNIHP----ATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred ccccchhhhhhh---------------ccccCc----chHHHHHHHHHHhcCCCcEEEEEec
Confidence 777655454321 111111 1122555667789999999999764
No 285
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.10 E-value=0.015 Score=53.73 Aligned_cols=124 Identities=28% Similarity=0.356 Sum_probs=78.1
Q ss_pred CeEEEECCcccHHHHHHHHHhCC----C----cEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc------cc
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGS----K----GSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------KD 262 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~----~----~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l------~~ 262 (371)
.+++|||+..|.++..+++++.. . ..|++||+.+-+ -++. |.-+++|+...- ..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHHHH
Confidence 48999999999999999987632 1 139999998733 2343 888899986542 22
Q ss_pred C-CCceeEEEEc-CCCCCCCCcccchhhhcccCccccccCCCCcHH------HHHHHHHHHhcccccCcEEEEEECCcCc
Q 017476 263 V-EGKLSGVVSN-PPYIPSDDISGLQVEVGKHEPRLALDGGVDGLD------YLLHLCNGTASMLKPGGFFAFETNGEKQ 334 (371)
Q Consensus 263 ~-~~~fDlIvsN-PPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~------~~~~il~~a~~~LkpgG~lvle~~~~~q 334 (371)
+ .++.|+|||+ -|=+ .|-+-++ .+...+..+...|+|||.++--+--.+.
T Consensus 111 fggekAdlVvcDGAPDv----------------------TGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ 168 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDV----------------------TGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD 168 (294)
T ss_pred hCCCCccEEEeCCCCCc----------------------cccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc
Confidence 2 3589999995 1211 1111122 3345667778899999999987733333
Q ss_pred HHHHHHHHhccccCCceeEEEEec
Q 017476 335 CKFLKNYLENDSACSFCNVSIVSD 358 (371)
Q Consensus 335 ~~~v~~~l~~~~~~gf~~v~~~~D 358 (371)
...+..-|+. -|..|...+.
T Consensus 169 tslLysql~~----ff~kv~~~KP 188 (294)
T KOG1099|consen 169 TSLLYSQLRK----FFKKVTCAKP 188 (294)
T ss_pred hHHHHHHHHH----HhhceeeecC
Confidence 3333333432 2455555443
No 286
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.08 E-value=0.02 Score=53.70 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=54.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
.+.+|+|+|||-==+++..... .++..++|.||+..+++....-+...+.+ .++...|.....+ ....|+.+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~--~~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPP--KEPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHT--TSEESEEEE
T ss_pred CCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCC--CCCcchhhH
Confidence 3679999999999998877764 46789999999999999999998888876 5666678766533 357888776
No 287
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.026 Score=55.22 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=70.8
Q ss_pred CCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCcee
Q 017476 191 NDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLS 268 (371)
Q Consensus 191 ~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fD 268 (371)
.....+++|||+|.|.|.-+.++-..++.-..++-++.|+..-++... +..+-...+.....+|+......+ ...|+
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv~t~~td~r~s~vt~dRl~lp~ad~yt 187 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENVSTEKTDWRASDVTEDRLSLPAADLYT 187 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhcccccCCCCCCccchhccCCCccceee
Confidence 355678899999999999988888776333367788888854444333 333322222333334433221111 23566
Q ss_pred EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC----cHHHHHHHHhc
Q 017476 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK----QCKFLKNYLEN 344 (371)
Q Consensus 269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~----q~~~v~~~l~~ 344 (371)
+++. . ..|-+ ++.+. -+...++.....+.|||.+++.-.|.. .-...+.++-+
T Consensus 188 l~i~------~---~eLl~-----------d~~ek---~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~ 244 (484)
T COG5459 188 LAIV------L---DELLP-----------DGNEK---PIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLA 244 (484)
T ss_pred hhhh------h---hhhcc-----------ccCcc---hHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhc
Confidence 6554 0 11100 11111 122367777889999999988664432 23344555544
No 288
>PHA01634 hypothetical protein
Probab=95.98 E-value=0.034 Score=46.86 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=56.0
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
..+++|+|+|.+.|.-++.++.+ ....|+++|.++...+..++|++.+.+-++. ...++|-. .-+.||+.+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI~DK~-v~~~eW~~----~Y~~~Di~~i 98 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNICDKA-VMKGEWNG----EYEDVDIFVM 98 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhheeeece-eecccccc----cCCCcceEEE
Confidence 35779999999999999999885 5678999999999999999999888664432 33345532 2367888776
No 289
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.92 E-value=0.017 Score=58.92 Aligned_cols=135 Identities=14% Similarity=0.174 Sum_probs=84.6
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCc--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcC
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKG--SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~--~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
.+|+|..+|.|.++.+|... +-+ +|+-+ ..+..+.+.. ..|+ -=+..||.+.+.....+||+|-+|-
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--~VWVMNVVP~-~~~ntL~vIy----dRGL----IG~yhDWCE~fsTYPRTYDLlHA~~ 435 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--PVWVMNVVPV-SGPNTLPVIY----DRGL----IGVYHDWCEAFSTYPRTYDLLHADG 435 (506)
T ss_pred eeeeeecccccHHHHHhccC--CceEEEeccc-CCCCcchhhh----hccc----chhccchhhccCCCCcchhheehhh
Confidence 47999999999999999763 321 22222 2222333221 2233 2244589888877678999999853
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEE
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVS 354 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~ 354 (371)
=|.... .+ -.+..++-+.-+.|+|||++++-. ..+-...++.+++. -.| +++
T Consensus 436 lfs~~~-------------~r----------C~~~~illEmDRILRP~G~~iiRD-~~~vl~~v~~i~~~---lrW-~~~ 487 (506)
T PF03141_consen 436 LFSLYK-------------DR----------CEMEDILLEMDRILRPGGWVIIRD-TVDVLEKVKKIAKS---LRW-EVR 487 (506)
T ss_pred hhhhhc-------------cc----------ccHHHHHHHhHhhcCCCceEEEec-cHHHHHHHHHHHHh---Ccc-eEE
Confidence 221100 00 113467778889999999999977 45667788888875 335 444
Q ss_pred EEecC---CCCceEEEEEe
Q 017476 355 IVSDF---AGIQRFVTGFR 370 (371)
Q Consensus 355 ~~~Dl---~g~~R~~~a~~ 370 (371)
++..- .+.+++++++|
T Consensus 488 ~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 488 IHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEecCCCCCCCceEEEEEC
Confidence 44333 34789998875
No 290
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.83 E-value=0.042 Score=53.92 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=57.2
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-CC-ceeEEEEcC
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-EG-KLSGVVSNP 274 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~~-~fDlIvsNP 274 (371)
.+++||+||.|.+.+.+... .---+.++|+++.+++.-+.|... ..++..|..+..... .+ .+|+|+.-|
T Consensus 4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 48999999999999888775 234688999999999988888532 456666765433221 12 799999999
Q ss_pred CCCCCCC
Q 017476 275 PYIPSDD 281 (371)
Q Consensus 275 PYi~~~~ 281 (371)
|+-+-+.
T Consensus 76 PCQ~FS~ 82 (328)
T COG0270 76 PCQDFSI 82 (328)
T ss_pred CCcchhh
Confidence 9865433
No 291
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.34 Score=45.55 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=85.6
Q ss_pred CCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCC---CcEEEEEeCCHHHHHHHHHHHHHc
Q 017476 167 EGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGS---KGSIIAVDLNPLAAAVAAFNAQRY 243 (371)
Q Consensus 167 ~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~---~~~V~gvDis~~al~~A~~n~~~~ 243 (371)
|..+--|.+++.+...+.+.. . ...+...+|+|+|+..-+..+...+.+ -.+.+.+|+|...+.-..+.+...
T Consensus 54 PEYYpTRtEaaIl~~~a~Eia-~---~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~ 129 (321)
T COG4301 54 PEYYPTRTEAAILQARAAEIA-S---ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE 129 (321)
T ss_pred ccccCchhHHHHHHHHHHHHH-H---hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh
Confidence 334444677777776666554 1 223568999999999877777665522 358999999998887655544433
Q ss_pred CCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc
Q 017476 244 GLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG 323 (371)
Q Consensus 244 gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (371)
-..-.+.-+.+|+...+..+.+.---+++ | ..+.+..+++ +....|+.+....|+||-
T Consensus 130 y~~l~v~~l~~~~~~~La~~~~~~~Rl~~---f-lGStlGN~tp------------------~e~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 130 YPGLEVNALCGDYELALAELPRGGRRLFV---F-LGSTLGNLTP------------------GECAVFLTQLRGALRPGD 187 (321)
T ss_pred CCCCeEeehhhhHHHHHhcccCCCeEEEE---E-ecccccCCCh------------------HHHHHHHHHHHhcCCCcc
Confidence 22223777888887666544322222222 1 1122222222 223468888999999999
Q ss_pred EEEEEEC
Q 017476 324 FFAFETN 330 (371)
Q Consensus 324 ~lvle~~ 330 (371)
.+++-+.
T Consensus 188 ~~LlGvD 194 (321)
T COG4301 188 YFLLGVD 194 (321)
T ss_pred eEEEecc
Confidence 9998764
No 292
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.53 E-value=0.041 Score=46.34 Aligned_cols=93 Identities=17% Similarity=0.304 Sum_probs=60.2
Q ss_pred cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 248 ~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
.+++..||+.+.++.....||+|+-++ |.|... ++. |. ..+++.+.+++++||.+.-
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~n-----Pel--Ws---------------~e~~~~l~~~~~~~~~l~T 88 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKN-----PEL--WS---------------EELFKKLARLSKPGGTLAT 88 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTS-----GGG--SS---------------HHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCC-----ccc--CC---------------HHHHHHHHHHhCCCcEEEE
Confidence 367888998777776668999999974 554433 221 11 1577888899999998776
Q ss_pred EECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEEEEeC
Q 017476 328 ETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVTGFRQ 371 (371)
Q Consensus 328 e~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~a~~~ 371 (371)
-. ....|++-|.+ .|| .|+..+-+.|+.=.+.|.++
T Consensus 89 ys----~a~~Vr~~L~~---aGF-~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 89 YS----SAGAVRRALQQ---AGF-EVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp S------BHHHHHHHHH---CTE-EEEEEE-STTSSEEEEEEC-
T ss_pred ee----chHHHHHHHHH---cCC-EEEEcCCCCCcchheEEEcC
Confidence 55 34568888886 789 57777777666668888763
No 293
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=95.52 E-value=0.32 Score=42.90 Aligned_cols=121 Identities=22% Similarity=0.266 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC
Q 017476 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS 255 (371)
Q Consensus 176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD 255 (371)
.+.+++.+.+.. ....+|+=+||=|-...+.- ...++.+++..|++..--. .+ +. +|+.=|
T Consensus 12 ~~~l~~~l~~~~------~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~--------~~--~~-~F~fyD 72 (162)
T PF10237_consen 12 AEFLARELLDGA------LDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQ--------FG--GD-EFVFYD 72 (162)
T ss_pred HHHHHHHHHHhc------CCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHh--------cC--Cc-ceEECC
Confidence 355566555433 13468999998887766654 1236778999999985522 22 22 455555
Q ss_pred cccccc---cCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc
Q 017476 256 WFGKLK---DVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE 332 (371)
Q Consensus 256 ~~~~l~---~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~ 332 (371)
..++.. ...++||+||.+|||.. . +......+.+..++++++.+++.+ |.
T Consensus 73 ~~~p~~~~~~l~~~~d~vv~DPPFl~--------~------------------ec~~k~a~ti~~L~k~~~kii~~T-g~ 125 (162)
T PF10237_consen 73 YNEPEELPEELKGKFDVVVIDPPFLS--------E------------------ECLTKTAETIRLLLKPGGKIILCT-GE 125 (162)
T ss_pred CCChhhhhhhcCCCceEEEECCCCCC--------H------------------HHHHHHHHHHHHHhCccceEEEec-HH
Confidence 544432 22579999999999953 1 223345555556668889999988 56
Q ss_pred CcHHHHHHHH
Q 017476 333 KQCKFLKNYL 342 (371)
Q Consensus 333 ~q~~~v~~~l 342 (371)
...+.+.+++
T Consensus 126 ~~~~~~~~ll 135 (162)
T PF10237_consen 126 EMEELIKKLL 135 (162)
T ss_pred HHHHHHHHHh
Confidence 6666666666
No 294
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.40 E-value=0.48 Score=44.66 Aligned_cols=120 Identities=16% Similarity=0.113 Sum_probs=70.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH-----HcCCCCcEEEEEcCccccccc--CCCc-e
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ-----RYGLQDIIEIRQGSWFGKLKD--VEGK-L 267 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~-----~~gl~~~v~~~~gD~~~~l~~--~~~~-f 267 (371)
..+||++|+|+|..++.+|.. ..++|+-.|+... +...+.|.. .+++...+.+..-+|.+++.. .... |
T Consensus 87 ~~~vlELGsGtglvG~~aa~~--~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~ 163 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALL--LGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF 163 (248)
T ss_pred ceeEEEecCCccHHHHHHHHH--hcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence 457999999999888888886 4678999898653 333333332 233333577777777665432 1233 8
Q ss_pred eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC-cHHHHHHHHhc
Q 017476 268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK-QCKFLKNYLEN 344 (371)
Q Consensus 268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~-q~~~v~~~l~~ 344 (371)
|+|++--+ -|+|+. +..++......|..+|.++++..-.+ +......++.+
T Consensus 164 DlilasDv---------------vy~~~~-----------~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~ 215 (248)
T KOG2793|consen 164 DLILASDV---------------VYEEES-----------FEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFK 215 (248)
T ss_pred cEEEEeee---------------eecCCc-----------chhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHHhh
Confidence 99887211 222221 22455555667788887777763222 23344444443
No 295
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=95.27 E-value=0.14 Score=49.48 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=29.1
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHH
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAA 234 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~ 234 (371)
....+||-.|||.|.++..+|.. +-++-|-|.|--|+-
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~---G~~~qGNEfSy~Mli 186 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACL---GFKCQGNEFSYFMLI 186 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHh---cccccccHHHHHHHH
Confidence 34568999999999999999986 234556577776653
No 296
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.25 E-value=0.28 Score=47.84 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=52.7
Q ss_pred EEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCC
Q 017476 199 WVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIP 278 (371)
Q Consensus 199 VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~ 278 (371)
|+|++||.|.+.+.+.+. .--.+.++|+++.+++.-+.|.. + .++.+|+.+........+|+++.-||+-+
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence 589999999999999764 22346789999999999888852 2 34557765432111236899999999865
Q ss_pred CC
Q 017476 279 SD 280 (371)
Q Consensus 279 ~~ 280 (371)
.+
T Consensus 72 fS 73 (315)
T TIGR00675 72 FS 73 (315)
T ss_pred cc
Confidence 44
No 297
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.18 E-value=0.022 Score=54.19 Aligned_cols=102 Identities=18% Similarity=0.102 Sum_probs=71.1
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
+..++|.|||.|-... ..|...++|.|++...+..|++- | ......+|+... +.....||.+++
T Consensus 46 gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~-p~~~~s~d~~ls--- 109 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKL-PFREESFDAALS--- 109 (293)
T ss_pred cceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC----C---CceeehhhhhcC-CCCCCccccchh---
Confidence 5689999999997653 12566899999999988887642 2 125777787653 333578998887
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcC
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEK 333 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~ 333 (371)
...++++....++ ..++++..+.|+|||...+-.-+..
T Consensus 110 ---iavihhlsT~~RR-----------------~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 110 ---IAVIHHLSTRERR-----------------ERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred ---hhhhhhhhhHHHH-----------------HHHHHHHHHHhcCCCceEEEEehhh
Confidence 3444555444333 2678888899999999887664433
No 298
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.04 E-value=0.092 Score=51.64 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=63.7
Q ss_pred CCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE---cCcccccccCCCce
Q 017476 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQ---GSWFGKLKDVEGKL 267 (371)
Q Consensus 192 ~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~---gD~~~~l~~~~~~f 267 (371)
+..++++|+=.|+| .|.+++.+|+.+ +++|+++|.+++-++.|++- |.. .++. .|..+.+. +.|
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~~---~~~ 230 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAVK---EIA 230 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHhH---hhC
Confidence 34457788887776 557899999976 49999999999999988764 322 3333 33333332 359
Q ss_pred eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
|+|+.-=| ..-++.+.+.|++||.+++.-
T Consensus 231 d~ii~tv~---------------------------------~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 231 DAIIDTVG---------------------------------PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred cEEEECCC---------------------------------hhhHHHHHHHHhcCCEEEEEC
Confidence 99987211 034456668899999988864
No 299
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=94.90 E-value=0.7 Score=43.41 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=81.2
Q ss_pred EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---cCCCceeEEEEcCCC
Q 017476 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVVSNPPY 276 (371)
Q Consensus 200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---~~~~~fDlIvsNPPY 276 (371)
|..-+||-.++..+.+. .-++.++|+.+.-....++|+. -..++++.++|-+..+. ...++=-+|+.+|||
T Consensus 93 l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPf 166 (279)
T COG2961 93 LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPF 166 (279)
T ss_pred cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCCc
Confidence 89999999999988874 5689999999999888888876 23469999999876432 123566799999999
Q ss_pred CCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc--cCcEEEEEECCcCcHHHHHHHHhccccCCc
Q 017476 277 IPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK--PGGFFAFETNGEKQCKFLKNYLENDSACSF 350 (371)
Q Consensus 277 i~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk--pgG~lvle~~~~~q~~~v~~~l~~~~~~gf 350 (371)
-..++ |..+++...+.++ ++|..++=- ...+.+.+++++++.++-+.
T Consensus 167 E~~~e--------------------------Y~rvv~~l~~~~kRf~~g~yaiWY-Pik~r~~~~~f~~~L~~~~i 215 (279)
T COG2961 167 ELKDE--------------------------YQRVVEALAEAYKRFATGTYAIWY-PIKDRRQIRRFLRALEALGI 215 (279)
T ss_pred ccccH--------------------------HHHHHHHHHHHHHhhcCceEEEEE-eecchHHHHHHHHHHhhcCc
Confidence 64332 3344443333333 556655544 24566667777776544444
No 300
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.83 E-value=0.016 Score=55.41 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=58.6
Q ss_pred CCeEEEECCcccHHHH-HHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 196 DGFWVDLGTGSGAIAI-GIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al-~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
+..|+|+.+|.|++++ .+... ....|+|.|.+|.+++..++|++.|+..++..++.||-...-. ....|-|..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~a--gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTA--GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--RLRADRVNL 268 (351)
T ss_pred cchhhhhhcccceEEeehhhcc--CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--cccchheee
Confidence 4689999999999999 55543 5678999999999999999999999988888888888654322 355665543
No 301
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.72 E-value=0.049 Score=49.33 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=32.9
Q ss_pred eeEEEEcCCCCCCCCc---ccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCc
Q 017476 267 LSGVVSNPPYIPSDDI---SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGE 332 (371)
Q Consensus 267 fDlIvsNPPYi~~~~~---~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~ 332 (371)
.|+|+.+|||....+. ..... -..+ .+=++.+..++.++.++|||||.+++.++..
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~-~~~~---------~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGD-NKNH---------EEYLEWMEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCH-CCHH---------HHHHHHHHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred CCEEEECCCCCCCCCcchhhhccC-CCCH---------HHHHHHHHHHHHHHHhhcCCCeeEEEEecch
Confidence 5999999999755441 00000 0000 0114566788999999999999999998543
No 302
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.20 E-value=1.1 Score=41.16 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCCeEEEECCccc----HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc-ccccCCCceeE
Q 017476 195 RDGFWVDLGTGSG----AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG-KLKDVEGKLSG 269 (371)
Q Consensus 195 ~~~~VLDlG~GsG----~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~-~l~~~~~~fDl 269 (371)
..+.+++.+|+.| .++++.|.+ +.++++++|-.+++.+...++.+...++.+.++|+.++-.+ .+... ...|+
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr-~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-~~iDF 118 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAAR-QTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-KGIDF 118 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc-cCCCE
Confidence 3568999976644 455555555 37889999999999988888888888888778999988543 33333 46888
Q ss_pred EEE
Q 017476 270 VVS 272 (371)
Q Consensus 270 Ivs 272 (371)
++.
T Consensus 119 ~vV 121 (218)
T PF07279_consen 119 VVV 121 (218)
T ss_pred EEE
Confidence 886
No 303
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.69 E-value=0.38 Score=44.99 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=71.0
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc--CCCceeEE
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--VEGKLSGV 270 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~--~~~~fDlI 270 (371)
..++.+||=||+++|..--.++.-.+|..-|+|||.|+..=.... |+.+.. + +|-.+..|+.-+.+. +-+-.|+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~-nmAkkR-t-NiiPIiEDArhP~KYRmlVgmVDvI 230 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI-NMAKKR-T-NIIPIIEDARHPAKYRMLVGMVDVI 230 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH-HHhhcc-C-CceeeeccCCCchheeeeeeeEEEE
Confidence 346789999999999998888888889999999999985533222 222111 2 366666676554332 13568999
Q ss_pred EEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 271 VSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 271 vsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+++-+- | +..+.+.-+|...||+||.+++.+
T Consensus 231 FaDvaq-----------------p-----------dq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 231 FADVAQ-----------------P-----------DQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eccCCC-----------------c-----------hhhhhhhhhhhhhhccCCeEEEEE
Confidence 985221 1 112234446778999999999976
No 304
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.50 E-value=0.58 Score=48.22 Aligned_cols=81 Identities=14% Similarity=0.012 Sum_probs=55.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--------------
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-------------- 261 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-------------- 261 (371)
.-+++|++||.|.+.+.+-.. ..-.|.++|+++.|.+.-+.|.... + ....+.+|+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a--G~~~v~a~Eid~~A~~TY~~N~~~~--p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~ 162 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI--GGQCVFTSEWNKHAVRTYKANWYCD--P-ATHRFNEDIRDITLSHKEGVSDEEAAEH 162 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc--CCEEEEEEechHHHHHHHHHHcCCC--C-ccceeccChhhCccccccccchhhhhhh
Confidence 458999999999999998664 3346789999999999888874211 1 13344455433210
Q ss_pred --cCCCceeEEEEcCCCCCCCC
Q 017476 262 --DVEGKLSGVVSNPPYIPSDD 281 (371)
Q Consensus 262 --~~~~~fDlIvsNPPYi~~~~ 281 (371)
.....+|+++.-||+-+-+.
T Consensus 163 ~~~~~p~~DvL~gGpPCQ~FS~ 184 (467)
T PRK10458 163 IRQHIPDHDVLLAGFPCQPFSL 184 (467)
T ss_pred hhccCCCCCEEEEcCCCCccch
Confidence 01136899999999876443
No 305
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.49 E-value=0.18 Score=48.49 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=83.0
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc--CCC-CcEEEEEcCcccccccC-CCcee
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY--GLQ-DIIEIRQGSWFGKLKDV-EGKLS 268 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--gl~-~~v~~~~gD~~~~l~~~-~~~fD 268 (371)
...++++|-+|-|.|......++. ..-.+++-+|++...++..++-.... |.+ .++.++-||-+..+... .++||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 345789999999999998888876 34568999999999999988866533 332 46999999988766654 57899
Q ss_pred EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
+|+.+ .++. . -|..+ .+-+.+++...+.||+||+++..-
T Consensus 198 Vii~d-----ssdp--v-------gpa~~--------lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITD-----SSDP--V-------GPACA--------LFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEe-----cCCc--c-------chHHH--------HHHHHHHHHHHHhhCCCcEEEEec
Confidence 99983 1111 0 01111 223467888889999999998865
No 306
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=0.36 Score=47.66 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHh---C----CCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVL---G----SKGSIIAVDLNPLAAAVAAFNAQRY 243 (371)
Q Consensus 177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~---~----~~~~V~gvDis~~al~~A~~n~~~~ 243 (371)
|++..++++.+ .....+.+-.++++|.|+|.++..+.+.+ . ...++.-||.|++..+.=+++++..
T Consensus 60 ella~~~~~~w-q~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLW-QELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHH-HHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 45556666555 33333445689999999999998887753 2 2568999999998877766666544
No 307
>PTZ00357 methyltransferase; Provisional
Probab=93.34 E-value=0.3 Score=51.90 Aligned_cols=75 Identities=23% Similarity=0.144 Sum_probs=50.9
Q ss_pred eEEEECCcccHHHHHH---HHHhCCCcEEEEEeCCHHHHHHHHHHHHH-cCC-------CCcEEEEEcCccccccc----
Q 017476 198 FWVDLGTGSGAIAIGI---ARVLGSKGSIIAVDLNPLAAAVAAFNAQR-YGL-------QDIIEIRQGSWFGKLKD---- 262 (371)
Q Consensus 198 ~VLDlG~GsG~~al~l---a~~~~~~~~V~gvDis~~al~~A~~n~~~-~gl-------~~~v~~~~gD~~~~l~~---- 262 (371)
.|+-+|+|-|-+.-.. ++..+-..+|++||.|+.++.+...+.++ ... .++|+++.+|+.+....
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999764443 34334456899999997766565555422 223 34699999999764221
Q ss_pred ------CCCceeEEEE
Q 017476 263 ------VEGKLSGVVS 272 (371)
Q Consensus 263 ------~~~~fDlIvs 272 (371)
..+++|+|||
T Consensus 783 s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVS 798 (1072)
T ss_pred cccccccccccceehH
Confidence 1247999998
No 308
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=93.29 E-value=0.041 Score=55.05 Aligned_cols=63 Identities=24% Similarity=0.148 Sum_probs=55.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEcCccccc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQGSWFGKL 260 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~-v~~~~gD~~~~l 260 (371)
.+..|.|++||.|-+++.+++. +.+|++-|++++++++.+.|+..+.+.+. ++++..|.-+.+
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 4668999999999999999985 48999999999999999999999988765 888888876655
No 309
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.20 E-value=0.25 Score=46.42 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=36.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhCC-------CcEEEEEeCCHHHHHHHHHHHHH
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGS-------KGSIIAVDLNPLAAAVAAFNAQR 242 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~-------~~~V~gvDis~~al~~A~~n~~~ 242 (371)
+-+|+|+|.|+|.++..+.+.+.. ..+++-||.|+...+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 469999999999999999987632 24899999999888777777654
No 310
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.17 E-value=0.51 Score=44.52 Aligned_cols=126 Identities=21% Similarity=0.249 Sum_probs=72.1
Q ss_pred CCeEEEECCcccHHHHHHHHHh---C-CCcEEEEEeCC--------------------------HHHHHHHHHHHHHcCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVL---G-SKGSIIAVDLN--------------------------PLAAAVAAFNAQRYGL 245 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~---~-~~~~V~gvDis--------------------------~~al~~A~~n~~~~gl 245 (371)
++-|+|+||-.|..++.++..+ + ++.++++.|-= ...++..++|+.++|+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 5689999999998776665432 1 34568887741 1235556666666664
Q ss_pred -CCcEEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCc
Q 017476 246 -QDIIEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGG 323 (371)
Q Consensus 246 -~~~v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG 323 (371)
.+++++++|.+.+.++.. .+++-++..+ +-.| +-....|+..+..|.|||
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD---------------~DlY-------------esT~~aLe~lyprl~~GG 206 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLD---------------CDLY-------------ESTKDALEFLYPRLSPGG 206 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE------------------SH-------------HHHHHHHHHHGGGEEEEE
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEe---------------ccch-------------HHHHHHHHHHHhhcCCCe
Confidence 457999999987766542 2344444331 1123 335578888899999999
Q ss_pred EEEEEECCc-CcHHHHHHHHhccccCCcee
Q 017476 324 FFAFETNGE-KQCKFLKNYLENDSACSFCN 352 (371)
Q Consensus 324 ~lvle~~~~-~q~~~v~~~l~~~~~~gf~~ 352 (371)
++++.--+. ...++|.+++++ .|...
T Consensus 207 iIi~DDY~~~gcr~AvdeF~~~---~gi~~ 233 (248)
T PF05711_consen 207 IIIFDDYGHPGCRKAVDEFRAE---HGITD 233 (248)
T ss_dssp EEEESSTTTHHHHHHHHHHHHH---TT--S
T ss_pred EEEEeCCCChHHHHHHHHHHHH---cCCCC
Confidence 999976433 123456666664 44543
No 311
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.17 E-value=2.2 Score=38.13 Aligned_cols=160 Identities=12% Similarity=0.127 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhcCCceeeEee--cccccceeeEeeCCcccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHH
Q 017476 133 DELYGLWKQRIEKRKPFQYLVG--CEHWRDLVLSVEEGVFIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIA 210 (371)
Q Consensus 133 ~~~~~~~~~r~~~~~P~~yi~g--~~~f~~~~~~v~~~vliPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~a 210 (371)
++++..=.+|....++..++++ ...|.--.|.-+ +...+.+++...... ..+.+|.=+.|-|=.+-
T Consensus 21 ~eF~aEq~k~~e~~~~~~~~i~~~~eDwQlsqfwy~------~eta~~La~e~v~~s------~e~~rIacvS~Psly~y 88 (217)
T KOG3350|consen 21 NEFLAEQQKRIEEEENQSDIIEKIGEDWQLSQFWYS------DETARKLAAERVEAS------GEGSRIACVSCPSLYVY 88 (217)
T ss_pred HHHHHHHHhhhhccCchhhhhhhcccchhhhhhhcC------HHHHHHHHHHHHhhc------ccCceEEEEeCchHHhh
Confidence 3444444455555566655555 234431111111 223344555544432 13457777777664421
Q ss_pred HHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---CCCceeEEEEcCCCCCCCCcccchh
Q 017476 211 IGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---VEGKLSGVVSNPPYIPSDDISGLQV 287 (371)
Q Consensus 211 l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---~~~~fDlIvsNPPYi~~~~~~~l~~ 287 (371)
...-..--|.-+|+-.|.+... ..+| -+|+.-|...++.. +.+.||+||.+|||....
T Consensus 89 ~k~re~~~~~~~v~lfEfDkRF--------e~yg----~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~e------- 149 (217)
T KOG3350|consen 89 QKKREIEIPHDQVYLFEFDKRF--------ELYG----TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEE------- 149 (217)
T ss_pred hhhhhccCCceeEEEEEehhhH--------Hhcc----ceeEEeccCCCCCCHHHHHhcccEEEeCCccccch-------
Confidence 1111110145688888887643 3444 46777777655432 246899999999997532
Q ss_pred hhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476 288 EVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE 343 (371)
Q Consensus 288 ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~ 343 (371)
++..-...+..+.++.-.+++.+ |..-.+...+++.
T Consensus 150 -------------------Cl~Kts~tik~L~r~~~kvilCt-Geimee~~s~~l~ 185 (217)
T KOG3350|consen 150 -------------------CLAKTSETIKRLQRNQKKVILCT-GEIMEEWASALLP 185 (217)
T ss_pred -------------------hhhhhHHHHHHHhcCCceEEEec-hhHhHHHHHHHhh
Confidence 23344445556677777788877 4444444444443
No 312
>COG4889 Predicted helicase [General function prediction only]
Probab=92.96 E-value=0.56 Score=51.19 Aligned_cols=164 Identities=18% Similarity=0.243 Sum_probs=88.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCC--------CcEEEEEeCCHHHHHHHHHHHHHc--CCCCcE----EEEEcCccccc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGS--------KGSIIAVDLNPLAAAVAAFNAQRY--GLQDII----EIRQGSWFGKL 260 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~--------~~~V~gvDis~~al~~A~~n~~~~--gl~~~v----~~~~gD~~~~l 260 (371)
.+-+|||..+|||.+...+...+-. ....+|.||---+.-+|.-|+... ++.... .+..+|-++.+
T Consensus 845 ~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAaiNIe~t~~~~~gd~~~F~giaLtDtf~~~ 924 (1518)
T COG4889 845 QSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAAINIEQTAQNRDGDLKNFKGIALTDTFDYL 924 (1518)
T ss_pred CCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHhhhhcCCcccCCCceecchhhhh
Confidence 4568999999999988776543200 224677777655556666666532 111000 11222222211
Q ss_pred c------------------cCCCceeEEEEcCCCCCCCCc-ccchhhhcccCc-------cccc---cC-CCCcHHHHHH
Q 017476 261 K------------------DVEGKLSGVVSNPPYIPSDDI-SGLQVEVGKHEP-------RLAL---DG-GVDGLDYLLH 310 (371)
Q Consensus 261 ~------------------~~~~~fDlIvsNPPYi~~~~~-~~l~~ev~~~ep-------~~aL---~g-g~dGl~~~~~ 310 (371)
+ ...-+.-+|+.||||.....- ......+ .|.- ..+- .. -..-.+.|-+
T Consensus 925 Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~nl-~ypkLd~rv~~sy~k~STA~nknsl~Dsyir 1003 (1518)
T COG4889 925 EEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQNL-SYPKLDKRVYESYGKNSTATNKNSLRDSYIR 1003 (1518)
T ss_pred ccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCcccccc-ccchHHHHHHHHHhccchhhcccchHHHHHH
Confidence 1 012357899999999743221 1111111 1100 0000 00 1122466778
Q ss_pred HHHHHhcccccCcEEEEEECCc----CcHHHHHHHHhccccCCceeEEEEecCCCCce
Q 017476 311 LCNGTASMLKPGGFFAFETNGE----KQCKFLKNYLENDSACSFCNVSIVSDFAGIQR 364 (371)
Q Consensus 311 il~~a~~~LkpgG~lvle~~~~----~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R 364 (371)
.++-+...++.+|++-|..+|. ..++-++.-+.+ .|.++-++. +.|+.|
T Consensus 1004 a~RwasDri~d~GVigFV~NggfIDgnsaDG~R~sla~----dfs~iYvlN-LrGn~R 1056 (1518)
T COG4889 1004 AIRWASDRIKDNGVIGFVVNGGFIDGNSADGFRKSLAQ----DFSHIYVLN-LRGNQR 1056 (1518)
T ss_pred HHHHHhhhcccCceEEEEecCceecCccchHHHHHHHH----HhhhheEEe-ccCCcc
Confidence 8888999999999999988632 244556666653 366655443 555555
No 313
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.49 E-value=0.88 Score=47.37 Aligned_cols=44 Identities=27% Similarity=0.298 Sum_probs=36.7
Q ss_pred CCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 193 ~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
..++.+|+=+|+| .|..++..|+.+ +++|+++|.+++.++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 3467899999999 577888888876 4689999999999888775
No 314
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=92.36 E-value=0.23 Score=40.65 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCH
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNP 230 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~ 230 (371)
+....+|+|||.|.+.--|.++ +...+|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 4568999999999998888775 56789999744
No 315
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.21 E-value=0.32 Score=40.95 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=36.4
Q ss_pred CCeEEEECCcccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE-c
Q 017476 196 DGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS-N 273 (371)
Q Consensus 196 ~~~VLDlG~GsG~-~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs-N 273 (371)
..+|+++|-|.=. .+..|++. +..|+++|+++. ++. .| +.++..|.+++-...-...|+|.| |
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a~-~g----~~~v~DDif~P~l~iY~~a~lIYSiR 78 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KAP-EG----VNFVVDDIFNPNLEIYEGADLIYSIR 78 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S------------S----TTEE---SSS--HHHHTTEEEEEEES
T ss_pred CCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------ccc-cC----cceeeecccCCCHHHhcCCcEEEEeC
Confidence 3499999999765 45555553 479999999997 222 23 779999999875444457899999 6
Q ss_pred CC
Q 017476 274 PP 275 (371)
Q Consensus 274 PP 275 (371)
||
T Consensus 79 PP 80 (127)
T PF03686_consen 79 PP 80 (127)
T ss_dssp --
T ss_pred CC
Confidence 76
No 316
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.89 E-value=0.44 Score=47.48 Aligned_cols=95 Identities=16% Similarity=0.300 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc-------CC-CCc
Q 017476 177 ELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY-------GL-QDI 248 (371)
Q Consensus 177 e~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-------gl-~~~ 248 (371)
|...+.+.... .+.+..+.....|+|.|.|.....+|... ....-+|+++.+..-+.|..|...+ |- .+.
T Consensus 175 E~~~~ql~si~-dEl~~g~~D~F~DLGSGVGqlv~~~aa~a-~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~ 252 (419)
T KOG3924|consen 175 ETQLEQLRSIV-DELKLGPADVFMDLGSGVGQLVCFVAAYA-GCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNK 252 (419)
T ss_pred hhhHHHHHHHH-HHhccCCCCcccCCCcccchhhHHHHHhh-ccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCc
Confidence 44444444444 33345567789999999999988888753 5567889999888887777765432 33 456
Q ss_pred EEEEEcCcccccc--cCCCceeEEEEc
Q 017476 249 IEIRQGSWFGKLK--DVEGKLSGVVSN 273 (371)
Q Consensus 249 v~~~~gD~~~~l~--~~~~~fDlIvsN 273 (371)
++.+++++..+-. ......++|++|
T Consensus 253 ~~~i~gsf~~~~~v~eI~~eatvi~vN 279 (419)
T KOG3924|consen 253 IETIHGSFLDPKRVTEIQTEATVIFVN 279 (419)
T ss_pred eeecccccCCHHHHHHHhhcceEEEEe
Confidence 8999999876421 223568899986
No 317
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.63 E-value=0.15 Score=42.12 Aligned_cols=88 Identities=18% Similarity=0.306 Sum_probs=56.9
Q ss_pred cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC--CCceeEEEEcCCCCCCCCc
Q 017476 205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV--EGKLSGVVSNPPYIPSDDI 282 (371)
Q Consensus 205 GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~--~~~fDlIvsNPPYi~~~~~ 282 (371)
|.|..++.+|+.. +.+|+++|.++..++.+++ .|...-+.....|+.+.+... ...+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM--GAKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------- 67 (130)
T ss_dssp HHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-------
T ss_pred ChHHHHHHHHHHc--CCEEEEEECCHHHHHHHHh----hcccccccccccccccccccccccccceEEEEecC-------
Confidence 5689999999986 3999999999999888765 443211111112222222221 236999885211
Q ss_pred ccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 283 SGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 283 ~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
....++.+.+.|+++|.+++.-.
T Consensus 68 -------------------------~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 68 -------------------------SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp -------------------------SHHHHHHHHHHEEEEEEEEEESS
T ss_pred -------------------------cHHHHHHHHHHhccCCEEEEEEc
Confidence 01466777789999999998763
No 318
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.20 E-value=0.77 Score=44.80 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 192 DGLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 192 ~~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
+...+.+||=+|+| .|..+...|+.+ ...+|+.+|+++..++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH
Confidence 44567899999999 588888889987 66799999999999999997
No 319
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.03 E-value=1.5 Score=44.90 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=71.4
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCC
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYI 277 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi 277 (371)
+++-+|||.-.+...+-+. .-..|+.+|+|+.+++.+...-.+. .....+...|.... ...++.||+|+-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~--G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l-~fedESFdiVId----- 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKN--GFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQL-VFEDESFDIVID----- 120 (482)
T ss_pred eeEeecCCCCHHHHHHHhc--CCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhc-cCCCcceeEEEe-----
Confidence 8999999999998888774 4557999999999988765432211 12378888888653 233578999986
Q ss_pred CCCCcccc-hhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 278 PSDDISGL-QVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 278 ~~~~~~~l-~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.+.+..+ ..+...+- .......+....+.|++||+++..+
T Consensus 121 -kGtlDal~~de~a~~~-----------~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 121 -KGTLDALFEDEDALLN-----------TAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred -cCccccccCCchhhhh-----------hHHhhHHHhhHHHHhccCCEEEEEE
Confidence 1111111 11111110 0233456778889999999976655
No 320
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.77 E-value=0.76 Score=45.72 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=70.6
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-cccCCCceeEEE
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-LKDVEGKLSGVV 271 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-l~~~~~~fDlIv 271 (371)
..++..|+|.+|-.|.-+..+|.-+.+.++++|+|.+.+..+..++-+...|... +....+|+... .+..-...-.|+
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~t~~~~~~~~v~~iL 289 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLNTATPEKFRDVTYIL 289 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccCCCCcccccceeEEE
Confidence 3456899999999999999998877668899999999999999999998888765 77779998763 222224567899
Q ss_pred EcCCCCCCCC
Q 017476 272 SNPPYIPSDD 281 (371)
Q Consensus 272 sNPPYi~~~~ 281 (371)
++|+...+..
T Consensus 290 ~DpscSgSgm 299 (413)
T KOG2360|consen 290 VDPSCSGSGM 299 (413)
T ss_pred eCCCCCCCcc
Confidence 9999875543
No 321
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=90.10 E-value=3.8 Score=40.33 Aligned_cols=133 Identities=14% Similarity=0.050 Sum_probs=63.0
Q ss_pred CCCCeEEEECCcccHHHHHHHHHh---------------CCCcEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEE
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVL---------------GSKGSIIAVDLNPLAAAVAAFNAQRY------GLQDIIEIR 252 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~---------------~~~~~V~gvDis~~al~~A~~n~~~~------gl~~~v~~~ 252 (371)
...-+|+|+||.+|..++.+.... .|..+|+--|+=..=....=+++... .-.--+.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 345689999999999888776431 12247888887443222111111111 111124556
Q ss_pred EcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcc-----cC-ccccccCCC----------CcHHHHHHHHHHHh
Q 017476 253 QGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGK-----HE-PRLALDGGV----------DGLDYLLHLCNGTA 316 (371)
Q Consensus 253 ~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~-----~e-p~~aL~gg~----------dGl~~~~~il~~a~ 316 (371)
.|+++..+-. .+..|+++|---..+-... +.++.. +. -......+. ..-.++..+++.-+
T Consensus 95 pgSFy~rLfP-~~Svh~~~Ss~alHWLS~v---P~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra 170 (334)
T PF03492_consen 95 PGSFYGRLFP-SNSVHFGHSSYALHWLSQV---PEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARA 170 (334)
T ss_dssp ES-TTS--S--TT-EEEEEEES-TTB-SSS----CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccCC-CCceEEEEEechhhhcccC---CcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788776543 5789999883221111111 011100 00 000000000 01245667888888
Q ss_pred cccccCcEEEEEEC
Q 017476 317 SMLKPGGFFAFETN 330 (371)
Q Consensus 317 ~~LkpgG~lvle~~ 330 (371)
+-|+|||.+++...
T Consensus 171 ~ELv~GG~mvl~~~ 184 (334)
T PF03492_consen 171 EELVPGGRMVLTFL 184 (334)
T ss_dssp HHEEEEEEEEEEEE
T ss_pred heeccCcEEEEEEe
Confidence 89999999999764
No 322
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.63 E-value=0.96 Score=45.01 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=36.7
Q ss_pred CCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHH
Q 017476 194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFN 239 (371)
Q Consensus 194 ~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~n 239 (371)
.++.+||..|+|+ |.+++.+|+.. ...+|+++|.+++.++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHc
Confidence 3567899999988 88999999985 334699999999998887764
No 323
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.53 E-value=0.43 Score=48.78 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------cCCCceeE
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DVEGKLSG 269 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~~~~~fDl 269 (371)
...+|=+|-|+|.+...+...+ |...+++|+++|.+++.|+++.....-. +.+++-.|..+.+. ..+..||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcE
Confidence 4578999999999999888876 7789999999999999999987533211 23444444333221 12357999
Q ss_pred EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC--CcCcHHHHHHHHh
Q 017476 270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN--GEKQCKFLKNYLE 343 (371)
Q Consensus 270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~--~~~q~~~v~~~l~ 343 (371)
++.+ +++.+.+.++ -|..++ .-..++..+...|.|.|.+.+..- +..+..+++.-|+
T Consensus 374 l~~d---vds~d~~g~~------~pp~~f--------va~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~ 432 (482)
T KOG2352|consen 374 LMVD---VDSKDSHGMQ------CPPPAF--------VAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLA 432 (482)
T ss_pred EEEE---CCCCCcccCc------CCchHH--------HHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhh
Confidence 9874 1111111111 111111 123677888999999999987652 3345555655554
No 324
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=89.43 E-value=1.7 Score=39.51 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCCeEEEECCcccHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc-----CCCc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARV---LGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD-----VEGK 266 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~---~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~-----~~~~ 266 (371)
++..|++.|+--|.-++..|.. ++...+|+++|++-..++-+... . .+|.|++|+-.++.-. ....
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcC
Confidence 4668999999999888887764 34457999999998776544332 2 4599999987654210 1111
Q ss_pred eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC--------------Cc
Q 017476 267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN--------------GE 332 (371)
Q Consensus 267 fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~--------------~~ 332 (371)
+--|+. ....++.++....-++....+|.-|-++++|.. |.
T Consensus 143 y~kIfv-------------------------ilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~ 197 (237)
T COG3510 143 YPKIFV-------------------------ILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGG 197 (237)
T ss_pred CCcEEE-------------------------EecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCC
Confidence 111111 111122344445556666788899999999753 34
Q ss_pred CcHHHHHHHHhcc
Q 017476 333 KQCKFLKNYLEND 345 (371)
Q Consensus 333 ~q~~~v~~~l~~~ 345 (371)
...++|..+++..
T Consensus 198 gP~~AVe~ylr~~ 210 (237)
T COG3510 198 GPYEAVEAYLREF 210 (237)
T ss_pred ChHHHHHHHHHhC
Confidence 4567788888764
No 325
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=89.38 E-value=0.39 Score=45.19 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=44.4
Q ss_pred EEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---cCCCceeEEEEcCCC
Q 017476 200 VDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVVSNPPY 276 (371)
Q Consensus 200 LDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---~~~~~fDlIvsNPPY 276 (371)
+..-.||=.++..+.+ +.-+.+.+|+.+...+..++|+.. ..++++++.|.++.+. ....+=-+|+.+|||
T Consensus 62 l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allPP~~rRglVLIDPpY 135 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLPPPERRGLVLIDPPY 135 (245)
T ss_dssp --EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE----
T ss_pred cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCCCCCCCeEEEECCCC
Confidence 6778888888888876 457999999999999999888764 2469999999887432 223456799999999
Q ss_pred CCCCC
Q 017476 277 IPSDD 281 (371)
Q Consensus 277 i~~~~ 281 (371)
-..++
T Consensus 136 E~~~d 140 (245)
T PF04378_consen 136 EQKDD 140 (245)
T ss_dssp -STTH
T ss_pred CCchH
Confidence 65433
No 326
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.29 E-value=0.86 Score=45.03 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=36.6
Q ss_pred CCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 195 RDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 195 ~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
.+.+|+=+|||. |.+++.+++.+ ...+|+++|.+++-++.|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH
Confidence 344899999994 77788888875 66799999999999999987
No 327
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.25 E-value=1.3 Score=43.09 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 195 ~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
++.+||=.|+| .|.+++.+|+.. ...+|+++|.+++.++.|++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHH
Confidence 46788888875 455667777764 22379999999999888764
No 328
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.52 E-value=5.2 Score=37.28 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCeEEEECCcc-cHHHHHHHHHhC-CCcEEEEEeCCH---HHHHHHHHHHHHcCCCCcEEEEEcCcccccc--------
Q 017476 195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNP---LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-------- 261 (371)
Q Consensus 195 ~~~~VLDlG~Gs-G~~al~la~~~~-~~~~V~gvDis~---~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-------- 261 (371)
.+++++=.|.++ +.++.++++.+. .+++|+.++.+. +.++... .... ..++.+++.|+.+.-.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~---~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELA---DTLE-GQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHH---HHcC-CCceEEEecCCCCHHHHHHHHHHH
Confidence 356889889873 777777777652 456888886543 3333222 2221 2357888899865311
Q ss_pred -cCCCceeEEEEcCCCC
Q 017476 262 -DVEGKLSGVVSNPPYI 277 (371)
Q Consensus 262 -~~~~~fDlIvsNPPYi 277 (371)
...+++|++|.|.-+.
T Consensus 82 ~~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFA 98 (257)
T ss_pred HHhCCCccEEEECcccC
Confidence 1136899999997654
No 329
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=88.37 E-value=1.3 Score=37.87 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=34.8
Q ss_pred EECCccc--HHHHHHH-HHhCCCcEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEEcCc
Q 017476 201 DLGTGSG--AIAIGIA-RVLGSKGSIIAVDLNPLAAAVAAFN--AQRYGLQDIIEIRQGSW 256 (371)
Q Consensus 201 DlG~GsG--~~al~la-~~~~~~~~V~gvDis~~al~~A~~n--~~~~gl~~~v~~~~gD~ 256 (371)
|+|++.| .....+. +...+..+|+++|.++..++..++| +..+...+.++++....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 6555554 2345788999999999999999999 66664433456655443
No 330
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=88.35 E-value=8.3 Score=36.63 Aligned_cols=139 Identities=17% Similarity=0.153 Sum_probs=69.5
Q ss_pred CCCCCeEEEECCccc---HH-HHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCcee
Q 017476 193 GLRDGFWVDLGTGSG---AI-AIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLS 268 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG---~~-al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fD 268 (371)
.....+|+-+|+|+- +- ...|.+.++.++.++-.|+.+-. .+--..+.+|...... +.+||
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-------------SDa~~~~~~Dc~t~~~--~~k~D 123 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-------------SDADQSIVGDCRTYMP--PDKFD 123 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B--------------SSSEEEES-GGGEEE--SS-EE
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-------------cccCCceeccccccCC--CCccc
Confidence 345679999999974 23 33444555456778888887632 2334677888765433 37999
Q ss_pred EEEEcCCCCCCCCcccchhhhcccCccccccCCC--CcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccc
Q 017476 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGV--DGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDS 346 (371)
Q Consensus 269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~--dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~ 346 (371)
+|||+- |+++..-..|+ +...+...++.-+...|+-||.+++-+-...-..++-+++.
T Consensus 124 lIiSDm-----------------Yd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~--- 183 (299)
T PF06460_consen 124 LIISDM-----------------YDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMG--- 183 (299)
T ss_dssp EEEE---------------------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHT---
T ss_pred EEEEec-----------------ccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHh---
Confidence 999951 22222222222 11223334556667899999999998854444566777765
Q ss_pred cCCceeEEEEec---CCCCceEEEE
Q 017476 347 ACSFCNVSIVSD---FAGIQRFVTG 368 (371)
Q Consensus 347 ~~gf~~v~~~~D---l~g~~R~~~a 368 (371)
.|...+.+.- -+--+-|+++
T Consensus 184 --~F~~wt~FcT~VNtSSSEaFLig 206 (299)
T PF06460_consen 184 --YFSWWTCFCTAVNTSSSEAFLIG 206 (299)
T ss_dssp --TEEEEEEEEEGGGTTSS-EEEEE
T ss_pred --hcccEEEEecccCccccceeEEe
Confidence 3665555432 3334445544
No 331
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=88.05 E-value=1.6 Score=43.43 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=34.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
-..++|+|.|-|.++..++-.+ +..|+|||-|....+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 4589999999999999998764 6799999999877666654
No 332
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.95 E-value=5.6 Score=37.00 Aligned_cols=80 Identities=15% Similarity=0.030 Sum_probs=50.0
Q ss_pred CCCeEEEECCccc-HHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccC
Q 017476 195 RDGFWVDLGTGSG-AIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG-~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~ 263 (371)
.++++|=.|.++| .++.++++.+. .+.+|+.++.+.+..+.+++-.+..+ .+.++..|+.+.- ...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH
Confidence 4678999998873 77777776642 35689888988655433333222222 2457778875431 111
Q ss_pred CCceeEEEEcCCCC
Q 017476 264 EGKLSGVVSNPPYI 277 (371)
Q Consensus 264 ~~~fDlIvsNPPYi 277 (371)
.++.|++|.|.-+.
T Consensus 86 ~g~ld~lv~nAg~~ 99 (258)
T PRK07533 86 WGRLDFLLHSIAFA 99 (258)
T ss_pred cCCCCEEEEcCccC
Confidence 26799999997543
No 333
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.72 E-value=5.2 Score=38.68 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=63.8
Q ss_pred CCCCCCeEEEECCccc---HHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--------
Q 017476 192 DGLRDGFWVDLGTGSG---AIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL-------- 260 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG---~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l-------- 260 (371)
....++.||=-|.|+| .+++.+|++ +++++..|++.+..+...+.++..| +++.+..|..+.-
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~r---g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKR---GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHh---CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHH
Confidence 3446778999999988 367777775 4689999999999988888888776 5899999986531
Q ss_pred -ccCCCceeEEEEcCCCCCCCCccc
Q 017476 261 -KDVEGKLSGVVSNPPYIPSDDISG 284 (371)
Q Consensus 261 -~~~~~~fDlIvsNPPYi~~~~~~~ 284 (371)
...-|..|++|.|-=-.+...+-.
T Consensus 108 Vk~e~G~V~ILVNNAGI~~~~~ll~ 132 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAGIVTGKKLLD 132 (300)
T ss_pred HHHhcCCceEEEeccccccCCCccC
Confidence 122478999999965554444333
No 334
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.26 E-value=7.7 Score=35.89 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=49.6
Q ss_pred CCCeEEEECCcc-cHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476 195 RDGFWVDLGTGS-GAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (371)
Q Consensus 195 ~~~~VLDlG~Gs-G~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~ 263 (371)
.++++|-.|.++ +.++.++++.+ ..+.+|+.++.+....+.+++. . ..++.+++.|+.+.-. ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~----~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKL----V-DEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhh----c-cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 456888888774 56777777665 2467899888875433322221 1 1247888999865311 11
Q ss_pred CCceeEEEEcCCCC
Q 017476 264 EGKLSGVVSNPPYI 277 (371)
Q Consensus 264 ~~~fDlIvsNPPYi 277 (371)
.+++|++|.|.-+.
T Consensus 81 ~g~iD~lv~nAg~~ 94 (252)
T PRK06079 81 VGKIDGIVHAIAYA 94 (252)
T ss_pred hCCCCEEEEccccc
Confidence 26799999997654
No 335
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.00 E-value=1.8 Score=35.00 Aligned_cols=61 Identities=25% Similarity=0.293 Sum_probs=42.2
Q ss_pred CcccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--ccC-CCceeEEEE
Q 017476 204 TGSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--KDV-EGKLSGVVS 272 (371)
Q Consensus 204 ~GsG~~al~la~~~~~~~-~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--~~~-~~~fDlIvs 272 (371)
||.|.++..+++.+.... +|+.+|.+++.++.++.. + +.++.||..+.. ... -.+.|.|++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhcCccccCEEEE
Confidence 677888888888765455 899999999997776542 2 679999987642 111 246787776
No 336
>PRK09242 tropinone reductase; Provisional
Probab=86.92 E-value=9.4 Score=35.14 Aligned_cols=82 Identities=17% Similarity=-0.026 Sum_probs=53.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~~ 264 (371)
.++++|=.|+ +|.++..+++.+. .+.+|+.++.+.+.++....++....-..++.++.+|+.+.- ....
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3567777776 4455555555432 367899999998887776666654422245888999986531 1113
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+++|.+|.|.-+.
T Consensus 87 g~id~li~~ag~~ 99 (257)
T PRK09242 87 DGLHILVNNAGGN 99 (257)
T ss_pred CCCCEEEECCCCC
Confidence 5799999987653
No 337
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.82 E-value=5.8 Score=36.49 Aligned_cols=81 Identities=12% Similarity=-0.044 Sum_probs=53.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|++ |.++..+++.+ ..+.+|+.++.+.+.++...+.+...+ .++.++..|+.+.-. ...
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35678888865 45555555543 235789999999888777666665544 357888898865311 112
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
++.|++|.|.-+..
T Consensus 85 g~id~lv~~ag~~~ 98 (253)
T PRK05867 85 GGIDIAVCNAGIIT 98 (253)
T ss_pred CCCCEEEECCCCCC
Confidence 57999999976543
No 338
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=86.24 E-value=3.5 Score=39.37 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=33.2
Q ss_pred CCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 194 ~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
..+.+||..|+| .|..++.+|+.. +.+|++++.+++..+.+++
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence 345688888876 477888888874 5789999999988777654
No 339
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=86.14 E-value=0.074 Score=43.67 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcccccCcEEEEEECC
Q 017476 305 LDYLLHLCNGTASMLKPGGFFAFETNG 331 (371)
Q Consensus 305 l~~~~~il~~a~~~LkpgG~lvle~~~ 331 (371)
-+-++.+++.+.+.|+|||.+++|..+
T Consensus 20 D~Gl~~~f~~~~~~L~pGG~lilEpQ~ 46 (110)
T PF06859_consen 20 DEGLKRFFRRIYSLLRPGGILILEPQP 46 (110)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred CHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence 344567889999999999999999863
No 340
>PRK07063 short chain dehydrogenase; Provisional
Probab=85.84 E-value=11 Score=34.75 Aligned_cols=81 Identities=19% Similarity=0.118 Sum_probs=53.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|-.|++ |.++..+++.+ ..+.+|+.++.+++.++...+.+...+...++.++..|+.+.-. ...
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45678877764 55666666544 24678999999998877766666543233458899999865311 112
Q ss_pred CceeEEEEcCCC
Q 017476 265 GKLSGVVSNPPY 276 (371)
Q Consensus 265 ~~fDlIvsNPPY 276 (371)
+.+|.+|.|.-.
T Consensus 85 g~id~li~~ag~ 96 (260)
T PRK07063 85 GPLDVLVNNAGI 96 (260)
T ss_pred CCCcEEEECCCc
Confidence 579999998654
No 341
>PRK06940 short chain dehydrogenase; Provisional
Probab=85.57 E-value=4.8 Score=37.90 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=51.2
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--------cCCCceeE
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------DVEGKLSG 269 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--------~~~~~fDl 269 (371)
.++=-|+ |.++..+++.+..+.+|+.+|.+++.++.+.+.+...+ .++.++..|+.+.-. ...+++|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4554453 57999999888667899999999877665555554433 247888888765311 01257999
Q ss_pred EEEcCCC
Q 017476 270 VVSNPPY 276 (371)
Q Consensus 270 IvsNPPY 276 (371)
+|.|.-.
T Consensus 80 li~nAG~ 86 (275)
T PRK06940 80 LVHTAGV 86 (275)
T ss_pred EEECCCc
Confidence 9998754
No 342
>PRK07326 short chain dehydrogenase; Provisional
Probab=84.88 E-value=9.2 Score=34.55 Aligned_cols=75 Identities=16% Similarity=0.050 Sum_probs=50.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------c---CCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------D---VEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~---~~~ 265 (371)
+++++=.| |+|.++..+++.+. .+.+|++++.++..+....+.+... .++.++.+|+.+... . ..+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45788888 57778777777552 3568999999987766555554332 358899999865311 0 114
Q ss_pred ceeEEEEcC
Q 017476 266 KLSGVVSNP 274 (371)
Q Consensus 266 ~fDlIvsNP 274 (371)
.+|.||.|.
T Consensus 82 ~~d~vi~~a 90 (237)
T PRK07326 82 GLDVLIANA 90 (237)
T ss_pred CCCEEEECC
Confidence 689999875
No 343
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.88 E-value=13 Score=35.10 Aligned_cols=79 Identities=18% Similarity=0.066 Sum_probs=47.8
Q ss_pred CCeEEEECCcc-cHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 196 DGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 196 ~~~VLDlG~Gs-G~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
++.+|=.|+++ +.++.++++.+. .+++|+.++.+....+.+++.....+ .. .+++.|+.+.-. ...
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 56788888763 566766666542 35789988988643233333223333 22 567788765311 113
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+++|++|.|.-+.
T Consensus 82 g~iDilVnnAG~~ 94 (274)
T PRK08415 82 GKIDFIVHSVAFA 94 (274)
T ss_pred CCCCEEEECCccC
Confidence 6899999997654
No 344
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=84.78 E-value=1.2 Score=42.66 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHH
Q 017476 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAA 233 (371)
Q Consensus 176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al 233 (371)
+..+++.+.+.+ ...-...+++|||+|||+|.-.+.+... ....++..|.|.+.+
T Consensus 98 S~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 98 SVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVL 152 (282)
T ss_pred HHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhh--ccceeeeEecchhhe
Confidence 444555554332 1111235789999999999999998885 347899999999887
No 345
>PRK06914 short chain dehydrogenase; Provisional
Probab=83.73 E-value=18 Score=33.73 Aligned_cols=80 Identities=20% Similarity=0.143 Sum_probs=52.1
Q ss_pred CeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--------cCCCce
Q 017476 197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------DVEGKL 267 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--------~~~~~f 267 (371)
+++|=.| |+|.++..+++.+ ..+.+|++++.+++.++.........+...++.++.+|+.+.-. ...++.
T Consensus 4 k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 4 KIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 4567666 4556666665543 24678999999887776655555444444568999999866321 012568
Q ss_pred eEEEEcCCCC
Q 017476 268 SGVVSNPPYI 277 (371)
Q Consensus 268 DlIvsNPPYi 277 (371)
|.||.|.-+.
T Consensus 83 d~vv~~ag~~ 92 (280)
T PRK06914 83 DLLVNNAGYA 92 (280)
T ss_pred eEEEECCccc
Confidence 9999987554
No 346
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.04 E-value=10 Score=34.86 Aligned_cols=81 Identities=17% Similarity=0.032 Sum_probs=55.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.| |+|.++..+++.+. .+.+|+.++.++..++.....+...+ .++.++..|+.+.-. ...
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 456888777 57777888777652 46789999999887766666655444 347888899865311 112
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
+..|.+|.|.-+..
T Consensus 86 ~~~d~li~~ag~~~ 99 (255)
T PRK07523 86 GPIDILVNNAGMQF 99 (255)
T ss_pred CCCCEEEECCCCCC
Confidence 56899999976543
No 347
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=82.73 E-value=17 Score=36.49 Aligned_cols=141 Identities=12% Similarity=0.101 Sum_probs=72.1
Q ss_pred cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH---cCCC-----CcEEEEEc-CcccccccCCCceeEEEEcCC
Q 017476 205 GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQR---YGLQ-----DIIEIRQG-SWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 205 GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~---~gl~-----~~v~~~~g-D~~~~l~~~~~~fDlIvsNPP 275 (371)
|.|.+++.+|..+..+.+|+++|++++.++.+++.... .+++ .+.++... |..+. ....|+|+..-|
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~----~~~ad~vii~Vp 82 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA----YRDADYVIIATP 82 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh----hcCCCEEEEeCC
Confidence 55555555554443356899999999998877652110 0000 01222211 11111 134677776433
Q ss_pred CCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcCcHHHHHHHHhccccCCc----
Q 017476 276 YIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEKQCKFLKNYLENDSACSF---- 350 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~q~~~v~~~l~~~~~~gf---- 350 (371)
-..... .+.--+..++..++.+.+ +++|..++++.. .....+.+.+.+.+. .-.|
T Consensus 83 t~~~~k------------------~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~-~v~~~PE~ 142 (388)
T PRK15057 83 TDYDPK------------------TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTE-NIIFSPEF 142 (388)
T ss_pred CCCccC------------------CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcC-cEEECccc
Confidence 210000 001124566677777766 677777666542 334666777666531 0112
Q ss_pred -eeEEEEecCCCCceEEEEE
Q 017476 351 -CNVSIVSDFAGIQRFVTGF 369 (371)
Q Consensus 351 -~~v~~~~Dl~g~~R~~~a~ 369 (371)
..-+...|+...+|+++|-
T Consensus 143 l~~G~a~~d~~~p~rvv~G~ 162 (388)
T PRK15057 143 LREGKALYDNLHPSRIVIGE 162 (388)
T ss_pred ccCCcccccccCCCEEEEEc
Confidence 1224567777778998873
No 348
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.73 E-value=15 Score=34.17 Aligned_cols=80 Identities=9% Similarity=-0.014 Sum_probs=46.4
Q ss_pred CCCeEEEECCccc-HHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476 195 RDGFWVDLGTGSG-AIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG-~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~ 263 (371)
.++.+|=.|+++| .++.++++.+. .+.+|+.++.++...+.+++.....+ . ..+++.|+.+.-. ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g--~-~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG--C-NFVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC--C-ceEEEccCCCHHHHHHHHHHHHHH
Confidence 3567888888764 45555555442 36788888877543333333333323 1 2356788765311 11
Q ss_pred CCceeEEEEcCCCC
Q 017476 264 EGKLSGVVSNPPYI 277 (371)
Q Consensus 264 ~~~fDlIvsNPPYi 277 (371)
.+++|++|.|.-+.
T Consensus 84 ~g~iDilVnnag~~ 97 (260)
T PRK06603 84 WGSFDFLLHGMAFA 97 (260)
T ss_pred cCCccEEEEccccC
Confidence 36799999997653
No 349
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=82.60 E-value=20 Score=35.95 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEc
Q 017476 176 TELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDI-IEIRQG 254 (371)
Q Consensus 176 te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~-v~~~~g 254 (371)
.|++++.+.+.. ...+|+=++=.-|+++..++.. ++. .+ .| |--+-...++|++++|++.. ++++
T Consensus 32 de~ll~~~~~~~-------~~~~~~i~nd~fGal~~~l~~~-~~~-~~--~d-s~~~~~~~~~n~~~n~~~~~~~~~~-- 97 (378)
T PRK15001 32 DEYLLQQLDDTE-------IRGPVLILNDAFGALSCALAEH-KPY-SI--GD-SYISELATRENLRLNGIDESSVKFL-- 97 (378)
T ss_pred HHHHHHHHhhcc-------cCCCEEEEcCchhHHHHHHHhC-CCC-ee--eh-HHHHHHHHHHHHHHcCCCcccceee--
Confidence 466666665532 1137999999999999999963 231 11 22 22334456789999998643 4444
Q ss_pred CcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 255 SWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 255 D~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
+..+.++ +.+|+|+. |+|.. ++.....+..+..+|.+|+.+++-
T Consensus 98 ~~~~~~~---~~~d~vl~---~~PK~------------------------~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 98 DSTADYP---QQPGVVLI---KVPKT------------------------LALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred ccccccc---CCCCEEEE---EeCCC------------------------HHHHHHHHHHHHhhCCCCCEEEEE
Confidence 3333333 56999987 22211 345567888889999999997643
No 350
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=82.50 E-value=7.6 Score=37.69 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=32.5
Q ss_pred CCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 193 ~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
..++.+||=.|+| .|.+++.+|+.. +++|++++.+++.++.|++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH
Confidence 3456789888865 455667777764 5689999999988777665
No 351
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.09 E-value=13 Score=34.74 Aligned_cols=80 Identities=15% Similarity=0.005 Sum_probs=47.7
Q ss_pred CCCeEEEECCccc-HHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccC
Q 017476 195 RDGFWVDLGTGSG-AIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG-~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~ 263 (371)
.++++|=.|.++| .++.++++.+. .+.+|+.++.+....+.+.+ +.... +.+.++..|+.+.- ...
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL--GSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhcc--CCceEeecCCCCHHHHHHHHHHHHhh
Confidence 3567888888763 66666666542 35688888877432222222 22211 23567888886531 111
Q ss_pred CCceeEEEEcCCCC
Q 017476 264 EGKLSGVVSNPPYI 277 (371)
Q Consensus 264 ~~~fDlIvsNPPYi 277 (371)
.+++|++|.|.-+.
T Consensus 82 ~g~iD~linnAg~~ 95 (262)
T PRK07984 82 WPKFDGFVHSIGFA 95 (262)
T ss_pred cCCCCEEEECCccC
Confidence 36799999998654
No 352
>PRK06949 short chain dehydrogenase; Provisional
Probab=82.07 E-value=21 Score=32.61 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=53.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.+++|+=.| |+|.++..+++.+. .+.+|++++.+++.++.....+...+ .++.++.+|+.+.-. ...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 456788887 66777777776652 35689999999988776665554433 348889998864311 112
Q ss_pred CceeEEEEcCCC
Q 017476 265 GKLSGVVSNPPY 276 (371)
Q Consensus 265 ~~fDlIvsNPPY 276 (371)
+++|+||.|.-.
T Consensus 85 ~~~d~li~~ag~ 96 (258)
T PRK06949 85 GTIDILVNNSGV 96 (258)
T ss_pred CCCCEEEECCCC
Confidence 468999998754
No 353
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=81.85 E-value=4 Score=37.28 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=33.5
Q ss_pred CCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 194 ~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
.++.+||..|+|+ |..++.+++.. +.+|++++.+++..+.+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH
Confidence 4567999999986 66777777764 5799999999887776643
No 354
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.81 E-value=21 Score=33.17 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=51.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
+++++|-.| |+|.++..+++.+. .+.+|++++.+++.++...+.+...+ .++.++..|+.+.-. ...
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 356788777 56777777666542 45689999999877665554444433 347888888864210 012
Q ss_pred CceeEEEEcCC
Q 017476 265 GKLSGVVSNPP 275 (371)
Q Consensus 265 ~~fDlIvsNPP 275 (371)
+.+|++|.|.-
T Consensus 85 ~~iD~vi~~ag 95 (264)
T PRK07576 85 GPIDVLVSGAA 95 (264)
T ss_pred CCCCEEEECCC
Confidence 46899999864
No 355
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=81.72 E-value=2.9 Score=38.37 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=65.2
Q ss_pred CCc-ccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC-CceeEE
Q 017476 203 GTG-SGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE-GKLSGV 270 (371)
Q Consensus 203 G~G-sG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~-~~fDlI 270 (371)
|+| ++.++..+|+.+. .+++|+.++.+.+.++.+.+.+.... . .+++..|..+.-. ... +++|++
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~-~--~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~l 77 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY-G--AEVIQCDLSDEESVEALFDEAVERFGGRIDIL 77 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT-T--SEEEESCTTSHHHHHHHHHHHHHHHCSSESEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc-C--CceEeecCcchHHHHHHHHHHHhhcCCCeEEE
Confidence 455 4556666665532 47899999999998755555544332 1 2368998865311 112 789999
Q ss_pred EEcCCCCCC----CCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 271 VSNPPYIPS----DDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 271 vsNPPYi~~----~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
|.|..+.+. ..+..++.+. ++-. +. ..+-....+++.+.++++++|.+++..
T Consensus 78 V~~a~~~~~~~~~~~~~~~~~~~--~~~~--~~---~~~~~~~~~~~~~~~~~~~~gsii~is 133 (241)
T PF13561_consen 78 VNNAGISPPSNVEKPLLDLSEED--WDKT--FD---INVFSPFLLAQAALPLMKKGGSIINIS 133 (241)
T ss_dssp EEEEESCTGGGTSSSGGGSHHHH--HHHH--HH---HHTHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EecccccccccCCCChHhCCHHH--HHHH--HH---HHHHHHHHHHHHHHHHHhhCCCccccc
Confidence 998765543 2222222111 1000 00 001122355666667888999888764
No 356
>PRK07062 short chain dehydrogenase; Provisional
Probab=81.51 E-value=22 Score=32.84 Aligned_cols=82 Identities=12% Similarity=0.011 Sum_probs=53.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|++ |.++..+++.+ ..+.+|+.++.+++.++.+.+.+....-..++.++..|+.+... ...
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 35678877754 55555666554 24678999999998777666655443222357888888865311 113
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+++|++|.|.-+.
T Consensus 86 g~id~li~~Ag~~ 98 (265)
T PRK07062 86 GGVDMLVNNAGQG 98 (265)
T ss_pred CCCCEEEECCCCC
Confidence 5789999986543
No 357
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.46 E-value=19 Score=33.87 Aligned_cols=80 Identities=18% Similarity=0.060 Sum_probs=48.4
Q ss_pred CCCeEEEECCc-ccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccC
Q 017476 195 RDGFWVDLGTG-SGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV 263 (371)
Q Consensus 195 ~~~~VLDlG~G-sG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~ 263 (371)
.++++|=.|.+ ++.++.++++.+. .+.+|+.++.+....+.+++..+..+ ....++.|+.+.- ...
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHh
Confidence 35678888886 4677777777652 46688877665433333333333333 2456788875431 111
Q ss_pred CCceeEEEEcCCCC
Q 017476 264 EGKLSGVVSNPPYI 277 (371)
Q Consensus 264 ~~~fDlIvsNPPYi 277 (371)
.++.|++|.|.-+.
T Consensus 86 ~g~iD~lv~nAG~~ 99 (272)
T PRK08159 86 WGKLDFVVHAIGFS 99 (272)
T ss_pred cCCCcEEEECCccc
Confidence 36799999997654
No 358
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=81.40 E-value=6.3 Score=37.39 Aligned_cols=47 Identities=23% Similarity=0.274 Sum_probs=40.4
Q ss_pred CCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHc
Q 017476 194 LRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRY 243 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 243 (371)
..+..|||..+|+|..+++..+. +-..+|+|++++.++.+.+.+...
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~---~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNL---GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHc---CCceEEEecCHHHHHHHHHHHHhh
Confidence 35679999999999999888774 568999999999999999887654
No 359
>PRK05876 short chain dehydrogenase; Provisional
Probab=81.31 E-value=19 Score=33.79 Aligned_cols=81 Identities=12% Similarity=0.021 Sum_probs=52.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|++ |.++..+++.+. .+.+|+.+|.++..++.+.+.+...+ .++.++..|+.+.-. ...
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 35577766654 556666665542 35789999999887776655554443 248888999865311 112
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
++.|++|.|.-+..
T Consensus 82 g~id~li~nAg~~~ 95 (275)
T PRK05876 82 GHVDVVFSNAGIVV 95 (275)
T ss_pred CCCCEEEECCCcCC
Confidence 56899999976543
No 360
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=80.77 E-value=15 Score=33.72 Aligned_cols=81 Identities=15% Similarity=0.052 Sum_probs=51.2
Q ss_pred CeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCc
Q 017476 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~ 266 (371)
+++|=.| |+|.++..+++.+. .+.+|+.+|.+...++.....+....-..++.++..|+.+... ...++
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4677777 56777777766542 4578999999987665544443322111348889999865311 11257
Q ss_pred eeEEEEcCCCCC
Q 017476 267 LSGVVSNPPYIP 278 (371)
Q Consensus 267 fDlIvsNPPYi~ 278 (371)
.|.||.|.-+..
T Consensus 82 id~vv~~ag~~~ 93 (259)
T PRK12384 82 VDLLVYNAGIAK 93 (259)
T ss_pred CCEEEECCCcCC
Confidence 899999875543
No 361
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.73 E-value=6.3 Score=38.82 Aligned_cols=43 Identities=28% Similarity=0.156 Sum_probs=31.0
Q ss_pred CCCCeEEEECCc-ccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 194 ~~~~~VLDlG~G-sG~~al~la~~~~~~~-~V~gvDis~~al~~A~~ 238 (371)
.++.+||=.|+| .|.+++.+|+.. +. +|+++|.+++-++.|++
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH
Confidence 345677778865 355666677764 45 69999999998888764
No 362
>PRK08251 short chain dehydrogenase; Provisional
Probab=80.48 E-value=18 Score=32.93 Aligned_cols=80 Identities=13% Similarity=-0.022 Sum_probs=53.5
Q ss_pred CeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCc
Q 017476 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~ 266 (371)
+++|=.| |+|.++..+++.+. .+.+|+.++.+++.++.....+....-..++.++.+|+.+.-. ...+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4677666 57778877777652 3468999999988877666555443223358899999875411 11256
Q ss_pred eeEEEEcCCCC
Q 017476 267 LSGVVSNPPYI 277 (371)
Q Consensus 267 fDlIvsNPPYi 277 (371)
.|.+|.|.-+.
T Consensus 82 id~vi~~ag~~ 92 (248)
T PRK08251 82 LDRVIVNAGIG 92 (248)
T ss_pred CCEEEECCCcC
Confidence 89999986543
No 363
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.46 E-value=10 Score=35.18 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=49.7
Q ss_pred CCCeEEEECCc-ccHHHHHHHHHhC-CCcEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------
Q 017476 195 RDGFWVDLGTG-SGAIAIGIARVLG-SKGSIIAVDLNP--LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--------- 261 (371)
Q Consensus 195 ~~~~VLDlG~G-sG~~al~la~~~~-~~~~V~gvDis~--~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--------- 261 (371)
.+++++=.|.| ++.++.++++.+. .+.+|+.++.+. +.++...+. .+ .++.++..|+.+.-.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~---~~--~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKR---LP--EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHh---cC--CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 45689988985 6778888877652 357899888764 333332222 22 246788888865311
Q ss_pred cCCCceeEEEEcCCCC
Q 017476 262 DVEGKLSGVVSNPPYI 277 (371)
Q Consensus 262 ~~~~~fDlIvsNPPYi 277 (371)
...+++|++|.|.-+.
T Consensus 81 ~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 81 EHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHcCCCcEEEEccccc
Confidence 1136899999997543
No 364
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.37 E-value=6.4 Score=38.45 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=30.4
Q ss_pred CCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeC---CHHHHHHHHH
Q 017476 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDL---NPLAAAVAAF 238 (371)
Q Consensus 195 ~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDi---s~~al~~A~~ 238 (371)
++.+||=.|+| .|.+++.+|+.. +.+|++++. +++.++.+++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHH
Confidence 46788888886 366777788874 568999987 6777666653
No 365
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=80.33 E-value=7.8 Score=35.43 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=52.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc-----------ccc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK-----------LKD 262 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~-----------l~~ 262 (371)
+++++|=.| |+|.++..+++.+. .+.+|++++.++..++...+.+...+. .++.++..|+... +..
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHHH
Confidence 466788888 57777777776542 356999999998877666655555442 2477777777421 111
Q ss_pred CCCceeEEEEcCCC
Q 017476 263 VEGKLSGVVSNPPY 276 (371)
Q Consensus 263 ~~~~fDlIvsNPPY 276 (371)
..+++|.||.|--.
T Consensus 89 ~~~~id~vi~~Ag~ 102 (247)
T PRK08945 89 QFGRLDGVLHNAGL 102 (247)
T ss_pred HhCCCCEEEECCcc
Confidence 12578999998543
No 366
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.30 E-value=21 Score=32.16 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=49.8
Q ss_pred CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
+++|+=.|++ |.++..+++.+ ..+.+|++++.+++.+..+.+.....+ ++.++.+|+.+.-. ...+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 5688888875 66666666554 246799999999887765544443322 48889999875321 0124
Q ss_pred ceeEEEEcCC
Q 017476 266 KLSGVVSNPP 275 (371)
Q Consensus 266 ~fDlIvsNPP 275 (371)
.+|.++.|..
T Consensus 81 ~id~ii~~ag 90 (238)
T PRK05786 81 AIDGLVVTVG 90 (238)
T ss_pred CCCEEEEcCC
Confidence 5798888764
No 367
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.21 E-value=25 Score=32.14 Aligned_cols=80 Identities=18% Similarity=0.133 Sum_probs=54.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.+++++=.| |+|.++..+++.+ ..+.+|+.++.+++.++.....++..+ .++.++.+|+.+.-. ...
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 466788777 5666677766654 246799999999887766665555544 348899999865311 112
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+++|.+|.|.-+.
T Consensus 87 ~~id~vi~~ag~~ 99 (256)
T PRK06124 87 GRLDILVNNVGAR 99 (256)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987654
No 368
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=79.97 E-value=22 Score=32.66 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=49.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.| |+|.++..+++.+. .+.+|+.+|.+.+.++...+.. ..++.++.+|+.+... ...+
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVERFG 79 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45677666 66777777776652 4578999999987765443322 2348888999865311 1125
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
..|++|.|.-+.
T Consensus 80 ~id~li~~ag~~ 91 (257)
T PRK07067 80 GIDILFNNAALF 91 (257)
T ss_pred CCCEEEECCCcC
Confidence 789999986654
No 369
>PRK07109 short chain dehydrogenase; Provisional
Probab=79.63 E-value=19 Score=35.02 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=53.8
Q ss_pred CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
+++|+=.| |+|.++..+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++.+|+.+.-. ...+
T Consensus 8 ~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 45677776 4566666666554 246789999999988877777766555 348889999865321 1125
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
++|++|.|.-+.
T Consensus 85 ~iD~lInnAg~~ 96 (334)
T PRK07109 85 PIDTWVNNAMVT 96 (334)
T ss_pred CCCEEEECCCcC
Confidence 799999987543
No 370
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.39 E-value=13 Score=35.19 Aligned_cols=123 Identities=16% Similarity=0.087 Sum_probs=72.7
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHH------HHHHHHHHcCCCCcEEEEEcCcccccc--c-CCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAA------VAAFNAQRYGLQDIIEIRQGSWFGKLK--D-VEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~------~A~~n~~~~gl~~~v~~~~gD~~~~l~--~-~~~ 265 (371)
..+||.+|=|.=.++..++..++ ....+++..++..-.+ .|+.|+.....-+-.-+...|...... . ..+
T Consensus 57 ~~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~sl~~~~~~~~~ 136 (282)
T KOG4174|consen 57 KQKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTSLKFHADLRLQ 136 (282)
T ss_pred cccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEecccceeEEeccccccc
Confidence 34799999888889999998875 4456777766554422 245555432111112233334433211 1 136
Q ss_pred ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccc-cCcEEEEEE
Q 017476 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLK-PGGFFAFET 329 (371)
Q Consensus 266 ~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~Lk-pgG~lvle~ 329 (371)
+||-||.|-|.-...-......... | + --+.++.+++.|..+|+ ..|.+.+.+
T Consensus 137 ~~d~IiFNFPH~G~g~~~e~d~~~i---~---~-----~qkL~rgFle~akemL~~edGeI~itl 190 (282)
T KOG4174|consen 137 RYDNIIFNFPHSGKGIKFEQDRNII---P---L-----HQKLFRGFLESAKEMLKDEDGEIHITL 190 (282)
T ss_pred ccceEEEcCCCCCCCcccccchHHH---H---H-----HHHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 8999999988754422111111000 0 0 13567789999999999 889998865
No 371
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=79.35 E-value=30 Score=31.97 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=53.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|+++| ++..+++.+ ..+.+|+.++.+++.++.+..+....+ .++.+++.|+.+... ...
T Consensus 9 ~~k~~lItGa~~~-iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASYG-IGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3567888877654 444444433 136789999999988877776665544 358889999865321 112
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
+++|++|.|.-+..
T Consensus 86 ~~id~li~~ag~~~ 99 (265)
T PRK07097 86 GVIDILVNNAGIIK 99 (265)
T ss_pred CCCCEEEECCCCCC
Confidence 57899999976643
No 372
>PRK08324 short chain dehydrogenase; Validated
Probab=79.02 E-value=14 Score=39.87 Aligned_cols=80 Identities=21% Similarity=0.088 Sum_probs=51.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|+ +|.++..+++.+. .+.+|+++|.++..++.+...+... .++.++..|..+.-. ...
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3467776664 4556666665431 3578999999998776655544322 358889998765311 012
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
+.+|+||.|.-+..
T Consensus 497 g~iDvvI~~AG~~~ 510 (681)
T PRK08324 497 GGVDIVVSNAGIAI 510 (681)
T ss_pred CCCCEEEECCCCCC
Confidence 57899999876543
No 373
>PRK08267 short chain dehydrogenase; Provisional
Probab=78.90 E-value=17 Score=33.42 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=49.4
Q ss_pred eEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------cC----CCc
Q 017476 198 FWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DV----EGK 266 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~~----~~~ 266 (371)
++|-.|++ |.++..+++.+ ..+.+|+.++.+++.++....... ..++.++++|+.+... .. .++
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56666644 56666666543 245789999999887766554432 2358899999865311 10 357
Q ss_pred eeEEEEcCCCCC
Q 017476 267 LSGVVSNPPYIP 278 (371)
Q Consensus 267 fDlIvsNPPYi~ 278 (371)
+|++|.|.-+..
T Consensus 78 id~vi~~ag~~~ 89 (260)
T PRK08267 78 LDVLFNNAGILR 89 (260)
T ss_pred CCEEEECCCCCC
Confidence 899999876543
No 374
>PRK06500 short chain dehydrogenase; Provisional
Probab=78.86 E-value=22 Score=32.28 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=47.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~~~ 265 (371)
++++|=.|+ +|.++..+++.+. .+.+|++++.+++.++...+. .+ .++.+++.|..+.. ....+
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEGARVAITGRDPASLEAARAE---LG--ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---hC--CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 345665554 5666666665542 356899999987665443332 22 34778888875421 11125
Q ss_pred ceeEEEEcCCCCC
Q 017476 266 KLSGVVSNPPYIP 278 (371)
Q Consensus 266 ~fDlIvsNPPYi~ 278 (371)
++|++|.|..+..
T Consensus 80 ~id~vi~~ag~~~ 92 (249)
T PRK06500 80 RLDAVFINAGVAK 92 (249)
T ss_pred CCCEEEECCCCCC
Confidence 7899999987643
No 375
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=78.82 E-value=14 Score=34.29 Aligned_cols=80 Identities=15% Similarity=-0.026 Sum_probs=47.0
Q ss_pred CCCeEEEECCc-ccHHHHHHHHHhC-CCcEEEEEeCCHH---HHHHHHHHHHHcCCCCcEEEEEcCcccccc--------
Q 017476 195 RDGFWVDLGTG-SGAIAIGIARVLG-SKGSIIAVDLNPL---AAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-------- 261 (371)
Q Consensus 195 ~~~~VLDlG~G-sG~~al~la~~~~-~~~~V~gvDis~~---al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-------- 261 (371)
.+++++=.|++ ++.++.++++.+. .+.+|+.++.+.+ ..+.+++ +...+ .++.+++.|+.+.-.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRE-LTEPL--NPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHH-HHhcc--CcceEeecCcCCHHHHHHHHHHH
Confidence 35688888985 6788888887652 4567877654432 1111211 22222 236678888755311
Q ss_pred -cCCCceeEEEEcCCCC
Q 017476 262 -DVEGKLSGVVSNPPYI 277 (371)
Q Consensus 262 -~~~~~fDlIvsNPPYi 277 (371)
...+++|++|.|.-+.
T Consensus 82 ~~~~g~iD~lv~nag~~ 98 (258)
T PRK07370 82 KQKWGKLDILVHCLAFA 98 (258)
T ss_pred HHHcCCCCEEEEccccc
Confidence 1136899999998654
No 376
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.73 E-value=22 Score=32.72 Aligned_cols=79 Identities=14% Similarity=0.195 Sum_probs=47.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|-.|+ +|.++..+++++ ..+.+|+.++.+.. +.+.+.++..+ .++.++..|+.+.-. ...
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 3567887775 455666666543 24678988877542 22233333333 358889999865311 113
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
+++|++|.|.-+..
T Consensus 82 g~iD~lv~~ag~~~ 95 (251)
T PRK12481 82 GHIDILINNAGIIR 95 (251)
T ss_pred CCCCEEEECCCcCC
Confidence 67999999976543
No 377
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=78.32 E-value=5.4 Score=39.05 Aligned_cols=43 Identities=30% Similarity=0.259 Sum_probs=31.5
Q ss_pred CCCCeEEEECCc-ccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 194 ~~~~~VLDlG~G-sG~~al~la~~~~~~~-~V~gvDis~~al~~A~~ 238 (371)
.++.+||=.|+| .|..++.+|+.. +. +|+++|.+++.++.+++
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALA--GASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 456788888875 355667777764 44 59999999998888753
No 378
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.08 E-value=21 Score=32.29 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=53.6
Q ss_pred CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
+++++=.| |+|.++..+++.+ ..+.+|+.++.++..++.....+...+ .++.++..|..+... ...+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45788887 5788888877654 246799999999877665555554333 458889999865321 0124
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
..|+||.|....
T Consensus 84 ~id~vi~~ag~~ 95 (239)
T PRK07666 84 SIDILINNAGIS 95 (239)
T ss_pred CccEEEEcCccc
Confidence 689999987543
No 379
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=78.06 E-value=14 Score=31.38 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=54.3
Q ss_pred eEEEECCcccHHHHHHHHHhC--CCcEEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccCC
Q 017476 198 FWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLN--PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVE 264 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~--~~~~V~gvDis--~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~~ 264 (371)
++|=.|++ |.++..+++.+- ...+|+.+..+ .+.++.....+...+ .++.+++.|..+.- ....
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 45555555 556666665442 24588899988 555555555555555 46999999976531 1113
Q ss_pred CceeEEEEcCCCCCCCCcccc
Q 017476 265 GKLSGVVSNPPYIPSDDISGL 285 (371)
Q Consensus 265 ~~fDlIvsNPPYi~~~~~~~l 285 (371)
+.+|++|.|........+..+
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~ 99 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDL 99 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGS
T ss_pred ccccccccccccccccccccc
Confidence 689999999887765554444
No 380
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=78.02 E-value=17 Score=33.43 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=55.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
+++++|=.| |+|.++..+++.+. .+.+|+.++.+...++...+.+...+ .++.++.+|+.+.-. ...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 356788887 67788888877652 35689999999887776666555443 357889999875311 112
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+.+|.||.|..+.
T Consensus 88 ~~id~vi~~ag~~ 100 (259)
T PRK08213 88 GHVDILVNNAGAT 100 (259)
T ss_pred CCCCEEEECCCCC
Confidence 4689999997653
No 381
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.85 E-value=11 Score=36.22 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=29.6
Q ss_pred CCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 195 ~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
++.++|=+||| .|.+++.+|+.+ ....|+++|.+++.++.|..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhhhh
Confidence 35678888875 466777778865 33357788999887776653
No 382
>PRK05599 hypothetical protein; Provisional
Probab=77.40 E-value=15 Score=33.85 Aligned_cols=78 Identities=19% Similarity=0.123 Sum_probs=53.1
Q ss_pred eEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccCCCcee
Q 017476 198 FWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEGKLS 268 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~~~~fD 268 (371)
.+|=.|+ ++.++..+++.+..+.+|+.++.+++.++.+.+.++..+- +++.++..|..+.- ....++.|
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 4565565 4566777777665678999999998888776666655542 24778888876531 11136899
Q ss_pred EEEEcCCCC
Q 017476 269 GVVSNPPYI 277 (371)
Q Consensus 269 lIvsNPPYi 277 (371)
++|.|.-+.
T Consensus 80 ~lv~nag~~ 88 (246)
T PRK05599 80 LAVVAFGIL 88 (246)
T ss_pred EEEEecCcC
Confidence 999987553
No 383
>PRK06125 short chain dehydrogenase; Provisional
Probab=77.34 E-value=32 Score=31.58 Aligned_cols=81 Identities=15% Similarity=0.050 Sum_probs=52.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc-----cCCCceeE
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-----DVEGKLSG 269 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-----~~~~~fDl 269 (371)
++++|=.|+ +|.++..+++.+. .+.+|++++.+++.++.+...+.... ..++.++..|+.+.-. ...++.|+
T Consensus 7 ~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 7 GKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 567787785 4556666655431 35699999999887766665554432 2357888888865311 11267999
Q ss_pred EEEcCCCCC
Q 017476 270 VVSNPPYIP 278 (371)
Q Consensus 270 IvsNPPYi~ 278 (371)
+|.|.-...
T Consensus 85 lv~~ag~~~ 93 (259)
T PRK06125 85 LVNNAGAIP 93 (259)
T ss_pred EEECCCCCC
Confidence 999975543
No 384
>PRK08643 acetoin reductase; Validated
Probab=77.17 E-value=38 Score=30.93 Aligned_cols=79 Identities=24% Similarity=0.180 Sum_probs=52.8
Q ss_pred CeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCc
Q 017476 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~ 266 (371)
+++|=.| |+|.++..+++.+. .+.+|+.++.+++.++.+...+...+ .++.++..|+.+.-. ...++
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 3566555 55667777766542 45689999999887776666665443 348889999865321 11257
Q ss_pred eeEEEEcCCCCC
Q 017476 267 LSGVVSNPPYIP 278 (371)
Q Consensus 267 fDlIvsNPPYi~ 278 (371)
.|.+|.|.-+.+
T Consensus 80 id~vi~~ag~~~ 91 (256)
T PRK08643 80 LNVVVNNAGVAP 91 (256)
T ss_pred CCEEEECCCCCC
Confidence 899999976644
No 385
>PRK08339 short chain dehydrogenase; Provisional
Probab=76.95 E-value=32 Score=31.96 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=50.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------c--CCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------D--VEG 265 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~--~~~ 265 (371)
.++++|=.|+++ .++.++++.+ ..+.+|+.++.+++.++.+.+.+.... ..++.++..|..+... . ..+
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSK-GIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCC-cHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 355777776554 4555555543 146799999999888776666554331 2358889999865311 0 025
Q ss_pred ceeEEEEcCC
Q 017476 266 KLSGVVSNPP 275 (371)
Q Consensus 266 ~fDlIvsNPP 275 (371)
.+|++|.|.=
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 7899998854
No 386
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=76.69 E-value=35 Score=31.20 Aligned_cols=79 Identities=16% Similarity=0.066 Sum_probs=52.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.| |+|.++..+++++. .+.+|+.++.++..+......+...+ .++.++..|+.+... ...+
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 45677777 55667777766542 35799999999877766655555443 347788888865311 1125
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
.+|++|.|.-+.
T Consensus 86 ~id~vi~~ag~~ 97 (254)
T PRK08085 86 PIDVLINNAGIQ 97 (254)
T ss_pred CCCEEEECCCcC
Confidence 789999997654
No 387
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=76.60 E-value=4.4 Score=37.63 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=34.5
Q ss_pred HHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 179 MVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 179 lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
++.++.+.+ ... ...+++|+.||+|+++..+... ..+|+.-|+++..+...+
T Consensus 8 l~~~I~~~i-p~~---~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELI-PKN---KHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS--S----S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHc-CCC---CCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHH
Confidence 456666666 211 4669999999999999988763 478999999997766554
No 388
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.51 E-value=29 Score=32.60 Aligned_cols=79 Identities=18% Similarity=0.044 Sum_probs=47.0
Q ss_pred CCCeEEEECCcc-cHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476 195 RDGFWVDLGTGS-GAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (371)
Q Consensus 195 ~~~~VLDlG~Gs-G~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~ 263 (371)
+++++|=.|+++ +.++.++|+.+ ..+++|+.++.+....+..++.....+. ..+++.|+.+.-. ..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~---~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS---DFVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC---ceEEeCCCCCHHHHHHHHHHHHHH
Confidence 356888888875 25566665544 2467898888775433333332223331 3467888865311 11
Q ss_pred CCceeEEEEcCCC
Q 017476 264 EGKLSGVVSNPPY 276 (371)
Q Consensus 264 ~~~fDlIvsNPPY 276 (371)
.+++|++|.|.-.
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 3689999999754
No 389
>PRK07677 short chain dehydrogenase; Provisional
Probab=76.47 E-value=27 Score=32.02 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=48.6
Q ss_pred CeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCc
Q 017476 197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGK 266 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~ 266 (371)
+++|=.|++. .++..+++.+ ..+.+|++++.++..++.+.+.+...+ .++.+++.|..+.-. ...+.
T Consensus 2 k~~lItG~s~-giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGGSS-GMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 4677667644 4555555543 145789999999877766655554433 358899998754311 01257
Q ss_pred eeEEEEcCC
Q 017476 267 LSGVVSNPP 275 (371)
Q Consensus 267 fDlIvsNPP 275 (371)
.|.+|.|.-
T Consensus 79 id~lI~~ag 87 (252)
T PRK07677 79 IDALINNAA 87 (252)
T ss_pred ccEEEECCC
Confidence 899999864
No 390
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=76.01 E-value=15 Score=35.19 Aligned_cols=42 Identities=31% Similarity=0.343 Sum_probs=31.7
Q ss_pred CCCeEEEECCcc-cHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476 195 RDGFWVDLGTGS-GAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 195 ~~~~VLDlG~Gs-G~~al~la~~~~~~~-~V~gvDis~~al~~A~~ 238 (371)
++.+||-.|+|. |..++.+|+.. +. ++++++.+++..+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH
Confidence 567888888775 66777788874 45 79999999888775543
No 391
>PRK08589 short chain dehydrogenase; Validated
Probab=75.66 E-value=34 Score=31.90 Aligned_cols=79 Identities=15% Similarity=0.104 Sum_probs=48.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|++ |.++..+++.+. .+.+|+.++.+ +.++...+.+...+ .++.++..|+.+... ...
T Consensus 5 ~~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 5 ENKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 34567766655 455556555432 46799999998 44444444444333 348888888865311 112
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
++.|++|.|.-+.
T Consensus 81 g~id~li~~Ag~~ 93 (272)
T PRK08589 81 GRVDVLFNNAGVD 93 (272)
T ss_pred CCcCEEEECCCCC
Confidence 5789999997654
No 392
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=75.58 E-value=3.2 Score=38.39 Aligned_cols=66 Identities=29% Similarity=0.421 Sum_probs=53.8
Q ss_pred ccccchHHHHHHHHHHHhhhcCCCCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH
Q 017476 170 FIPRPETELMVDLVSDVLVRDNDGLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNA 240 (371)
Q Consensus 170 liPrp~te~lv~~~~~~~~~~~~~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~ 240 (371)
-.|.+-...+++.+++.+ ...++...+|.--|.|..+..+.+.. +..++++.|.+|-|-++|+.-.
T Consensus 22 ~~~~~HVPVm~devl~~l----spv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 22 EVPSSHVPVMLDEVLDIL----SPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred cccccCCceehhhHHHHc----CCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhh
Confidence 344444457888888887 45567899999999999999999984 8889999999999988887654
No 393
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=75.38 E-value=30 Score=35.85 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcccccCcEEEEEEC-CcCcHHHHHHHHhcccc-CCcee---------EEEEecCCCCceEEEE
Q 017476 305 LDYLLHLCNGTASMLKPGGFFAFETN-GEKQCKFLKNYLENDSA-CSFCN---------VSIVSDFAGIQRFVTG 368 (371)
Q Consensus 305 l~~~~~il~~a~~~LkpgG~lvle~~-~~~q~~~v~~~l~~~~~-~gf~~---------v~~~~Dl~g~~R~~~a 368 (371)
+..+...++.+.++|++|-.++++.. .....+.+...+.+... ..|.- -....|+...+|+|+|
T Consensus 103 ls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~G~a~~d~~~p~riViG 177 (473)
T PLN02353 103 LTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIG 177 (473)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCCCCcccccCCCCEEEEc
Confidence 56777888889999998877777652 23345667666664211 12321 1457888899998865
No 394
>PRK05872 short chain dehydrogenase; Provisional
Probab=75.35 E-value=28 Score=33.09 Aligned_cols=80 Identities=21% Similarity=0.141 Sum_probs=49.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|+ +|.++..+++.+. .+.+|+.++.+++.++...+.+ +-..++..+..|+.+.-. ...
T Consensus 8 ~gk~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTGA-ARGIGAELARRLHARGAKLALVDLEEAELAALAAEL---GGDDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4567887664 4556666665442 4579999999988766544433 212346666788765311 112
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
+++|++|.|.-...
T Consensus 84 g~id~vI~nAG~~~ 97 (296)
T PRK05872 84 GGIDVVVANAGIAS 97 (296)
T ss_pred CCCCEEEECCCcCC
Confidence 57999999976543
No 395
>PRK12744 short chain dehydrogenase; Provisional
Probab=75.33 E-value=38 Score=31.03 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=46.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCC----HHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--------
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLN----PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK-------- 261 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis----~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~-------- 261 (371)
.++++|=.| |+|.++..+++.+. .+.+|+.++.+ .+.++...+.+...+ .++.+++.|+.+...
T Consensus 7 ~~k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~ 83 (257)
T PRK12744 7 KGKVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCcEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHH
Confidence 346788777 56668888877653 34576666543 233333333333333 358889999865311
Q ss_pred -cCCCceeEEEEcCCC
Q 017476 262 -DVEGKLSGVVSNPPY 276 (371)
Q Consensus 262 -~~~~~fDlIvsNPPY 276 (371)
...++.|++|.|.-.
T Consensus 84 ~~~~~~id~li~~ag~ 99 (257)
T PRK12744 84 KAAFGRPDIAINTVGK 99 (257)
T ss_pred HHhhCCCCEEEECCcc
Confidence 112578999998643
No 396
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=75.06 E-value=2.8 Score=44.18 Aligned_cols=136 Identities=18% Similarity=0.124 Sum_probs=76.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc---------cccCCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK---------LKDVEG 265 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~---------l~~~~~ 265 (371)
+...||||||..|.+...+++.++.+.-|+|||+-|-- -++ ++.-++.|+... +.. -
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~-~c~t~v~dIttd~cr~~l~k~l~t--~ 109 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIP-NCDTLVEDITTDECRSKLRKILKT--W 109 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCC-ccchhhhhhhHHHHHHHHHHHHHh--C
Confidence 35579999999999999999998778899999997721 111 133333333211 111 1
Q ss_pred ceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhcc
Q 017476 266 KLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEND 345 (371)
Q Consensus 266 ~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~ 345 (371)
+.|+|+.+- .+.|...--+-|... -...-..+..|...|+.||.++--+........+...+.+.
T Consensus 110 ~advVLhDg-----------apnVg~~w~~DA~~q----~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qL 174 (780)
T KOG1098|consen 110 KADVVLHDG-----------APNVGGNWVQDAFQQ----ACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQL 174 (780)
T ss_pred CCcEEeecC-----------CCccchhHHHHHHHh----hHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHH
Confidence 357877631 111111000001000 01122456677788999999766664444555566666543
Q ss_pred ccCCceeEEEEecCCCCc
Q 017476 346 SACSFCNVSIVSDFAGIQ 363 (371)
Q Consensus 346 ~~~gf~~v~~~~Dl~g~~ 363 (371)
|..|+..++.+..-
T Consensus 175 ----f~kv~~tkp~asr~ 188 (780)
T KOG1098|consen 175 ----FKKVEATKPAASRS 188 (780)
T ss_pred ----HHHHHhcCChhhhh
Confidence 55666665555443
No 397
>PRK07806 short chain dehydrogenase; Provisional
Probab=75.05 E-value=65 Score=29.17 Aligned_cols=119 Identities=14% Similarity=0.103 Sum_probs=63.9
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCH-HHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNP-LAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~-~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~ 263 (371)
.++++|-.|+ +|.++..+++.+. .+.+|++++.+. ..++.....++..+ .++.++.+|+.+.-. ..
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3567888775 4556666666542 456888887764 23333333333333 347889999865321 01
Q ss_pred CCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 264 EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 264 ~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
.+.+|.+|.|......... .+...+... ......+++.+.+.++.+|.+++..
T Consensus 82 ~~~~d~vi~~ag~~~~~~~----------~~~~~~~vn---~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 82 FGGLDALVLNASGGMESGM----------DEDYAMRLN---RDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCCcEEEECCCCCCCCCC----------CcceeeEee---eHHHHHHHHHHHhhccCCceEEEEe
Confidence 1468999998754321110 111111111 1223356666667776667766643
No 398
>PRK07454 short chain dehydrogenase; Provisional
Probab=75.03 E-value=28 Score=31.52 Aligned_cols=79 Identities=13% Similarity=-0.058 Sum_probs=52.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
.+++|=.| |+|.++..+++.+. .+.+|++++.+++..+...+.+...+ .++.++.+|+.+.-. ...+
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 35677777 47777777777542 45699999999877665554444332 358899999865321 0124
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
+.|++|.|.-+.
T Consensus 83 ~id~lv~~ag~~ 94 (241)
T PRK07454 83 CPDVLINNAGMA 94 (241)
T ss_pred CCCEEEECCCcc
Confidence 689999987554
No 399
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=74.96 E-value=33 Score=32.66 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=75.4
Q ss_pred CCCeEEEECCcccH---HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEcCccccc----------
Q 017476 195 RDGFWVDLGTGSGA---IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL-QDIIEIRQGSWFGKL---------- 260 (371)
Q Consensus 195 ~~~~VLDlG~GsG~---~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl-~~~v~~~~gD~~~~l---------- 260 (371)
.++.+|--|..+|. ++..+++ .+++|+..+.+.+.++.+.+-....+. ..++..+..|..+.-
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~---~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAK---AGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHH---CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 46677777777763 4555555 478999999999999888777666554 356888888886431
Q ss_pred ccCCCceeEEEEcCCCCCCC-CcccchhhhcccCccccccCCCCcHH-HHHHHHHHHhccccc--CcEEEEEE
Q 017476 261 KDVEGKLSGVVSNPPYIPSD-DISGLQVEVGKHEPRLALDGGVDGLD-YLLHLCNGTASMLKP--GGFFAFET 329 (371)
Q Consensus 261 ~~~~~~fDlIvsNPPYi~~~-~~~~l~~ev~~~ep~~aL~gg~dGl~-~~~~il~~a~~~Lkp--gG~lvle~ 329 (371)
....+++|++|.|.-..... .+..++.++...--..- +. .+..+...+..+|+. ||.+++..
T Consensus 84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~N-------l~G~~~~~~~~a~~~~~~~~gg~I~~~s 149 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATN-------LRGSAFCLKQAARPMLKKSKGGSIVNIS 149 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhh-------chhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 11247899999997665433 23333333322111111 11 233455556666765 66666643
No 400
>PRK09072 short chain dehydrogenase; Provisional
Probab=74.94 E-value=29 Score=31.96 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=49.9
Q ss_pred CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc--------CCCc
Q 017476 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD--------VEGK 266 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~--------~~~~ 266 (371)
++++|=.|++ |.++..+++.+ ..+.+|++++.+++.++.....+ .. ..++.++..|+.+.-.- ..+.
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 4467777655 55555555543 24679999999987766554433 22 34688999998653210 0256
Q ss_pred eeEEEEcCCCCC
Q 017476 267 LSGVVSNPPYIP 278 (371)
Q Consensus 267 fDlIvsNPPYi~ 278 (371)
.|.+|.|.-+..
T Consensus 81 id~lv~~ag~~~ 92 (263)
T PRK09072 81 INVLINNAGVNH 92 (263)
T ss_pred CCEEEECCCCCC
Confidence 899999976543
No 401
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=74.68 E-value=8.7 Score=36.41 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=53.2
Q ss_pred EEEEEcCcccccccC-CCceeEEEEcCCCCCCCCcccchhhhcccCccccccC--CCC-cHHH-HHHHHHHHhcccccCc
Q 017476 249 IEIRQGSWFGKLKDV-EGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDG--GVD-GLDY-LLHLCNGTASMLKPGG 323 (371)
Q Consensus 249 v~~~~gD~~~~l~~~-~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~g--g~d-Gl~~-~~~il~~a~~~LkpgG 323 (371)
..++++|.++.+... +..+|+|+.+|||--........... .+.. +..+ ... =... ....+..+.+.|+++|
T Consensus 17 ~~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~~ 93 (302)
T COG0863 17 SKIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLK-RWLD--AWDGWDSRGIYLKFILLQWLAEQKRVLKPGG 93 (302)
T ss_pred hheecchHHHHHhhccccceeEEEcCCCcccccccccccccc-ccch--hhhhhhhHHHHHHHHHHHHHHHhhheecCCC
Confidence 577888887655443 34899999999996543210000000 0000 0000 000 0122 4567888899999999
Q ss_pred EEEEEECCcCcHHHHHHHHhc
Q 017476 324 FFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 324 ~lvle~~~~~q~~~v~~~l~~ 344 (371)
.+++.+ +......+...+++
T Consensus 94 ~~~v~~-~~~~~~~~~~~~~~ 113 (302)
T COG0863 94 SLYVID-PFSNLARIEDIAKK 113 (302)
T ss_pred EEEEEC-CchhhhHHHHHHHh
Confidence 999998 44555566666664
No 402
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=74.50 E-value=12 Score=35.76 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=49.9
Q ss_pred EEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 249 IEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 249 v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
+++.++|+.+.+......=|+|.++|||.+...-... ..+ .+..-..+....+++.+.++=...|..+++
T Consensus 157 ~~i~~~df~~v~~~a~~~~dfvY~DPPY~~~s~t~~f----~~Y------~~~~f~~~~~~~La~~~~~l~~~~~i~~~~ 226 (274)
T COG0338 157 ATIENGDFEEVLADADSGDDFVYCDPPYLPLSATSNF----TAY------GGNGFTEDQHLRLAEVLKELEGKRGISVLD 226 (274)
T ss_pred CeEEcCCHHHHHhhccCCCcEEEeCCCCCcccccccc----ccc------cCCCCChHHHHHHHHHHHhccccceEEEec
Confidence 8899999977665333333899999999875432100 000 111223455555665554444778888888
Q ss_pred ECCcCcHHHHHHHHhc
Q 017476 329 TNGEKQCKFLKNYLEN 344 (371)
Q Consensus 329 ~~~~~q~~~v~~~l~~ 344 (371)
.+. ..+..+++.+.
T Consensus 227 sn~--~~~~~~~ly~~ 240 (274)
T COG0338 227 SNS--DTEETRELYKQ 240 (274)
T ss_pred Ccc--chHHHHHHHHh
Confidence 743 45566666654
No 403
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=74.26 E-value=18 Score=27.82 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=23.3
Q ss_pred CCCCeEEEECCcccH-HHHHHHHHhCCCcEEEEEeCCH
Q 017476 194 LRDGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNP 230 (371)
Q Consensus 194 ~~~~~VLDlG~GsG~-~al~la~~~~~~~~V~gvDis~ 230 (371)
..+++||-+|+-||. ++..++..|+.++..+||-...
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fEk 74 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFEK 74 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE---
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeecc
Confidence 346899999999996 5655666677788888886644
No 404
>PRK07831 short chain dehydrogenase; Provisional
Probab=74.14 E-value=33 Score=31.63 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=50.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEcCcccccc---------cC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQR-YGLQDIIEIRQGSWFGKLK---------DV 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~-~gl~~~v~~~~gD~~~~l~---------~~ 263 (371)
.++++|=.|.....++..+++.+ ..+.+|+.+|.+++.++.+.+.++. .+- .++.+++.|+.+.-. ..
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGL-GRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35677777753213444444433 1356899999998877766665544 221 358889999865311 11
Q ss_pred CCceeEEEEcCCCC
Q 017476 264 EGKLSGVVSNPPYI 277 (371)
Q Consensus 264 ~~~fDlIvsNPPYi 277 (371)
.++.|++|.|.-+.
T Consensus 95 ~g~id~li~~ag~~ 108 (262)
T PRK07831 95 LGRLDVLVNNAGLG 108 (262)
T ss_pred cCCCCEEEECCCCC
Confidence 25789999997654
No 405
>PRK08265 short chain dehydrogenase; Provisional
Probab=74.12 E-value=32 Score=31.77 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=48.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.| |+|.++..+++.+. .+.+|+.+|.+++.++...+. .+ .++.++++|+.+.-. ...
T Consensus 5 ~~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 5 AGKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAAS---LG--ERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC--CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 345777777 45566666666542 367999999988655433322 22 358889999865311 112
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+..|++|.|.-+.
T Consensus 79 g~id~lv~~ag~~ 91 (261)
T PRK08265 79 GRVDILVNLACTY 91 (261)
T ss_pred CCCCEEEECCCCC
Confidence 5789999997654
No 406
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=74.12 E-value=37 Score=30.59 Aligned_cols=78 Identities=19% Similarity=0.123 Sum_probs=48.0
Q ss_pred eEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEcCcccccc---------cCCCc
Q 017476 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRY-GLQDIIEIRQGSWFGKLK---------DVEGK 266 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~-gl~~~v~~~~gD~~~~l~---------~~~~~ 266 (371)
++|=.| |+|.++..+++.+. .+.+|++++.++. +.+++..... ....++.++..|+.+.-. ...+.
T Consensus 4 ~vlItG-~s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 4 IALVTG-AKRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred EEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 566666 67777777777652 3568999998754 2222222211 123458899999875311 11256
Q ss_pred eeEEEEcCCCCC
Q 017476 267 LSGVVSNPPYIP 278 (371)
Q Consensus 267 fDlIvsNPPYi~ 278 (371)
+|++|.|.-+..
T Consensus 81 id~vi~~ag~~~ 92 (245)
T PRK12824 81 VDILVNNAGITR 92 (245)
T ss_pred CCEEEECCCCCC
Confidence 999999977654
No 407
>PRK08862 short chain dehydrogenase; Provisional
Probab=73.98 E-value=35 Score=31.16 Aligned_cols=78 Identities=13% Similarity=-0.054 Sum_probs=50.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.+++++=.|+++|. +.++++.+ ..+.+|+.++.+++.++.+.+.+...+. ++..+..|..+.-. ...
T Consensus 4 ~~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 4 KSSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 35678888887764 44444433 2467899999999888777666655542 36677777654311 112
Q ss_pred C-ceeEEEEcCC
Q 017476 265 G-KLSGVVSNPP 275 (371)
Q Consensus 265 ~-~fDlIvsNPP 275 (371)
+ .+|++|.|.-
T Consensus 81 g~~iD~li~nag 92 (227)
T PRK08862 81 NRAPDVLVNNWT 92 (227)
T ss_pred CCCCCEEEECCc
Confidence 4 7999999974
No 408
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=73.83 E-value=15 Score=35.27 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=31.0
Q ss_pred CeEEEECC--cccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476 197 GFWVDLGT--GSGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 197 ~~VLDlG~--GsG~~al~la~~~~~~~-~V~gvDis~~al~~A~~ 238 (371)
.+||=.|. |.|..++.+|+.+ +. +|++++.+++-.+.+++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH
Confidence 68888875 5777888888875 55 79999999887766654
No 409
>PRK08703 short chain dehydrogenase; Provisional
Probab=73.79 E-value=18 Score=32.75 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=50.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc----c--------
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL----K-------- 261 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l----~-------- 261 (371)
++++++=.| |+|.++..+++.+. .+.+|++++.+++.++.....+...+-. .+.++..|+.+.. .
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~i~~ 82 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHP-EPFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCC-CcceEEeeecccchHHHHHHHHHHHH
Confidence 456888888 46667777766542 3578999999998777666655444322 3566677764311 0
Q ss_pred cCCCceeEEEEcCCC
Q 017476 262 DVEGKLSGVVSNPPY 276 (371)
Q Consensus 262 ~~~~~fDlIvsNPPY 276 (371)
...+.+|.||.|.-+
T Consensus 83 ~~~~~id~vi~~ag~ 97 (239)
T PRK08703 83 ATQGKLDGIVHCAGY 97 (239)
T ss_pred HhCCCCCEEEEeccc
Confidence 011568999988643
No 410
>PRK07904 short chain dehydrogenase; Provisional
Probab=73.40 E-value=16 Score=33.88 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=52.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-C-CcEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEcCcccccc------cC--
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-S-KGSIIAVDLNPLA-AAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DV-- 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~-~~~V~gvDis~~a-l~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~~-- 263 (371)
.+++||-.|+ +|.++..+++++. . +.+|+.++.+++. ++.+.+.+...+- .++++++.|..+.-. ..
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence 3557888877 5677777776542 2 3699999988764 6655555555442 258999999865321 00
Q ss_pred CCceeEEEEcCCC
Q 017476 264 EGKLSGVVSNPPY 276 (371)
Q Consensus 264 ~~~fDlIvsNPPY 276 (371)
.+..|++|.|-.+
T Consensus 85 ~g~id~li~~ag~ 97 (253)
T PRK07904 85 GGDVDVAIVAFGL 97 (253)
T ss_pred cCCCCEEEEeeec
Confidence 2579999988654
No 411
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=73.18 E-value=30 Score=31.30 Aligned_cols=80 Identities=24% Similarity=0.194 Sum_probs=53.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
+++||=.| |+|.++..+++.+. .+.+|++++-++..+..+.+.+...+ .++.++.+|+.+... ...+
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDFG 82 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 45788666 46777777776542 35689999999877665555555443 348899999865311 0124
Q ss_pred ceeEEEEcCCCCC
Q 017476 266 KLSGVVSNPPYIP 278 (371)
Q Consensus 266 ~fDlIvsNPPYi~ 278 (371)
++|+||.|..+..
T Consensus 83 ~~d~vi~~ag~~~ 95 (251)
T PRK12826 83 RLDILVANAGIFP 95 (251)
T ss_pred CCCEEEECCCCCC
Confidence 7899999986654
No 412
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=72.96 E-value=16 Score=35.66 Aligned_cols=43 Identities=5% Similarity=-0.025 Sum_probs=33.5
Q ss_pred CCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 193 GLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 193 ~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
..++.+||=.|+ |.|.+++.+|+.. +.+|++++.+++-.+.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHH
Confidence 345678888887 4778888899875 578999999988777665
No 413
>PRK07791 short chain dehydrogenase; Provisional
Probab=72.95 E-value=42 Score=31.67 Aligned_cols=80 Identities=15% Similarity=0.087 Sum_probs=48.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCH---------HHHHHHHHHHHHcCCCCcEEEEEcCccccc----
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNP---------LAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---- 260 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~---------~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---- 260 (371)
.++++|-.|+++ .++..+++.+ ..+.+|+.+|.+. +.++.+.+.+...+ .++.++..|+.+.-
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGAAN 81 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHHHH
Confidence 356788888655 4555555443 1467888888765 45544444444433 34778888886531
Q ss_pred -----ccCCCceeEEEEcCCCC
Q 017476 261 -----KDVEGKLSGVVSNPPYI 277 (371)
Q Consensus 261 -----~~~~~~fDlIvsNPPYi 277 (371)
....+++|++|.|.-+.
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCCC
Confidence 11136799999997554
No 414
>PRK05854 short chain dehydrogenase; Provisional
Probab=72.56 E-value=30 Score=33.21 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=52.4
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~~ 264 (371)
.+++++=.|++ |.++.++++.+. .+.+|+.+..+.+..+.+.+.+....-..++.++..|+.+.. ....
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 35577766665 555666665442 467999999998877666665544322235889999986531 1113
Q ss_pred CceeEEEEcCCC
Q 017476 265 GKLSGVVSNPPY 276 (371)
Q Consensus 265 ~~fDlIvsNPPY 276 (371)
++.|++|.|.-.
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 579999999654
No 415
>PLN02740 Alcohol dehydrogenase-like
Probab=72.48 E-value=10 Score=37.62 Aligned_cols=44 Identities=25% Similarity=0.166 Sum_probs=31.7
Q ss_pred CCCCCeEEEECCc-ccHHHHHHHHHhCCCc-EEEEEeCCHHHHHHHHH
Q 017476 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKG-SIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 193 ~~~~~~VLDlG~G-sG~~al~la~~~~~~~-~V~gvDis~~al~~A~~ 238 (371)
..++.+||=.|+| .|..++.+|+.+ +. +|+++|.+++.++.|++
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARAR--GASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH
Confidence 3456788888875 345566667764 45 69999999988888754
No 416
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=72.24 E-value=33 Score=31.13 Aligned_cols=76 Identities=21% Similarity=0.145 Sum_probs=50.5
Q ss_pred eEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccCCCce
Q 017476 198 FWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDVEGKL 267 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~~~~f 267 (371)
++|=.| |+|.++..+++.+ ..+.+|++++.++...+.........+ .++.++.+|+.+.- ....+..
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 455555 6778888887764 245689999998876665555444333 35889999987632 1112468
Q ss_pred eEEEEcCCC
Q 017476 268 SGVVSNPPY 276 (371)
Q Consensus 268 DlIvsNPPY 276 (371)
|.||.|.-+
T Consensus 80 d~vi~~a~~ 88 (255)
T TIGR01963 80 DILVNNAGI 88 (255)
T ss_pred CEEEECCCC
Confidence 999998644
No 417
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=72.04 E-value=14 Score=37.82 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=37.0
Q ss_pred CCCCCCeEEEECCcccHHHHHHHHHhCC-CcEEEEEeCCHHHHHHHHHHHHH
Q 017476 192 DGLRDGFWVDLGTGSGAIAIGIARVLGS-KGSIIAVDLNPLAAAVAAFNAQR 242 (371)
Q Consensus 192 ~~~~~~~VLDlG~GsG~~al~la~~~~~-~~~V~gvDis~~al~~A~~n~~~ 242 (371)
....+..+.|+|.|.|.-.-++-..+.. .-.++.||.+..+++....|++.
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~ 248 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD 248 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC
Confidence 4456778999998877655444443322 34689999999999999998865
No 418
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=71.85 E-value=6.3 Score=33.37 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=61.2
Q ss_pred cccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcC---------cccccccCCCceeEEEEcC
Q 017476 205 GSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGS---------WFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 205 GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD---------~~~~l~~~~~~fDlIvsNP 274 (371)
|.|+++..+|..+ ..+.+|+.+.-++ -++..+ ..| +.+...+ .........+.+|+|+.-
T Consensus 5 G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~----~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~- 74 (151)
T PF02558_consen 5 GAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIK----EQG----LTITGPDGDETVQPPIVISAPSADAGPYDLVIVA- 74 (151)
T ss_dssp STSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHH----HHC----EEEEETTEEEEEEEEEEESSHGHHHSTESEEEE--
T ss_pred CcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhh----hee----EEEEecccceecccccccCcchhccCCCcEEEEE-
Confidence 5666766666654 2467899999988 444322 233 2222222 001110113579988761
Q ss_pred CCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHh
Q 017476 275 PYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLE 343 (371)
Q Consensus 275 PYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~ 343 (371)
++.+ .....++.+..++.++..+++-.||....+.+.+.+.
T Consensus 75 --------------vKa~--------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~ 115 (151)
T PF02558_consen 75 --------------VKAY--------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFP 115 (151)
T ss_dssp --------------SSGG--------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHST
T ss_pred --------------eccc--------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcC
Confidence 1011 1235777788999999999999999888888888873
No 419
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=71.82 E-value=15 Score=35.90 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=61.8
Q ss_pred CCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccC-C-CceeE
Q 017476 194 LRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDV-E-GKLSG 269 (371)
Q Consensus 194 ~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~-~-~~fDl 269 (371)
..+.+||=.|. |.|.+++.+|+.+ ++.++++--+++-.+.++ ..|-..-+.+...|+.+.+... . ..+|+
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~g~gvDv 214 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELTGGKGVDV 214 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHcCCCCceE
Confidence 34678888884 4668999999986 337777777776655444 3454433555566666554332 2 35999
Q ss_pred EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEE
Q 017476 270 VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFET 329 (371)
Q Consensus 270 IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~ 329 (371)
|+-- .| - ..+..+...|+++|.++..-
T Consensus 215 v~D~-------------------------vG----~----~~~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 215 VLDT-------------------------VG----G----DTFAASLAALAPGGRLVSIG 241 (326)
T ss_pred EEEC-------------------------CC----H----HHHHHHHHHhccCCEEEEEe
Confidence 9850 01 1 34445567888889888865
No 420
>PRK06701 short chain dehydrogenase; Provisional
Probab=71.73 E-value=48 Score=31.37 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPL-AAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~-al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~ 263 (371)
+++++|=.|+ +|.++..+++.+. .+.+|+.++.+.. .++.....++..+ .++.++..|+.+... ..
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4567888775 5555666665542 3678888887753 3333333333333 358889999865311 11
Q ss_pred CCceeEEEEcCCCC
Q 017476 264 EGKLSGVVSNPPYI 277 (371)
Q Consensus 264 ~~~fDlIvsNPPYi 277 (371)
.+++|+||.|.-+.
T Consensus 122 ~~~iD~lI~~Ag~~ 135 (290)
T PRK06701 122 LGRLDILVNNAAFQ 135 (290)
T ss_pred cCCCCEEEECCccc
Confidence 24789999987653
No 421
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=71.54 E-value=18 Score=34.45 Aligned_cols=43 Identities=16% Similarity=-0.000 Sum_probs=32.8
Q ss_pred CCCCeEEEEC--CcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 194 LRDGFWVDLG--TGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 194 ~~~~~VLDlG--~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
.++.+||=.| .|.|..++.+|+.. +.+|++++.+++-.+.+++
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 3466888777 45777888889875 5789999999987777654
No 422
>PRK06139 short chain dehydrogenase; Provisional
Probab=71.27 E-value=35 Score=33.29 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=53.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|+ +|.++..+++.+ ..+.+|+.++.+++.++...+.++..+. ++.++..|+.+.-. ...
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 3456776665 455565555543 1467899999999988877777766553 47888888865311 112
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+.+|++|.|.-+.
T Consensus 83 g~iD~lVnnAG~~ 95 (330)
T PRK06139 83 GRIDVWVNNVGVG 95 (330)
T ss_pred CCCCEEEECCCcC
Confidence 6799999997543
No 423
>PRK07102 short chain dehydrogenase; Provisional
Probab=71.25 E-value=33 Score=31.15 Aligned_cols=78 Identities=10% Similarity=0.004 Sum_probs=51.7
Q ss_pred eEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------cCCCceeEE
Q 017476 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DVEGKLSGV 270 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~~~~~fDlI 270 (371)
+++=.| |+|.++..+++.+. .+.+|++++.+++..+...+++...+ ..++.+++.|..+... ....++|++
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 577666 56777777776652 35689999999887665555544332 2358999999876421 112357999
Q ss_pred EEcCCCC
Q 017476 271 VSNPPYI 277 (371)
Q Consensus 271 vsNPPYi 277 (371)
+.|..+.
T Consensus 81 v~~ag~~ 87 (243)
T PRK07102 81 LIAVGTL 87 (243)
T ss_pred EECCcCC
Confidence 9987654
No 424
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=70.93 E-value=65 Score=32.80 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=29.1
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
.+|-=+ |.|.+++.+|..+..+.+|+|+|++++.++..+
T Consensus 7 mkI~vI--GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 7 VKIAII--GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CeEEEE--CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 456555 567777777776655679999999999987765
No 425
>PRK06172 short chain dehydrogenase; Provisional
Probab=70.83 E-value=24 Score=32.27 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=54.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|+ +|.++..+++.+. .+.+|+.++.+++.++.+.+.+...+ .++.++.+|+.+... ...
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 3567888885 5566666665542 35689999999887776666665544 358899999865311 112
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+++|+||.|.-+.
T Consensus 83 g~id~li~~ag~~ 95 (253)
T PRK06172 83 GRLDYAFNNAGIE 95 (253)
T ss_pred CCCCEEEECCCCC
Confidence 5789999997653
No 426
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=69.64 E-value=17 Score=35.04 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCCCeEEEECCc-ccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHH
Q 017476 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAF 238 (371)
Q Consensus 194 ~~~~~VLDlG~G-sG~~al~la~~~~~~~~-V~gvDis~~al~~A~~ 238 (371)
.++.+||=.|+| .|.+++.+|+.. +.+ |+++|.+++-++.+++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 346788888764 344556667764 455 9999999988777653
No 427
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.63 E-value=64 Score=29.65 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=47.9
Q ss_pred CCCeEEEECCcc-cHHHHHHHHHhC-CCcEEEEEeCC-----------HHHHHHHHHHHHHcCCCCcEEEEEcCccccc-
Q 017476 195 RDGFWVDLGTGS-GAIAIGIARVLG-SKGSIIAVDLN-----------PLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL- 260 (371)
Q Consensus 195 ~~~~VLDlG~Gs-G~~al~la~~~~-~~~~V~gvDis-----------~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l- 260 (371)
+++++|=.|++. +.++..+++.+. .+.+|+.++.+ ........+.++..+ .++.+++.|+.+.-
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNG--VKVSSMELDLTQNDA 82 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHH
Confidence 466899988863 566666665442 35677776532 222223334444444 35888899875421
Q ss_pred --------ccCCCceeEEEEcCCCCC
Q 017476 261 --------KDVEGKLSGVVSNPPYIP 278 (371)
Q Consensus 261 --------~~~~~~fDlIvsNPPYi~ 278 (371)
....+..|++|.|.-+..
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~ 108 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYST 108 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCC
Confidence 111256899999986543
No 428
>PRK07832 short chain dehydrogenase; Provisional
Probab=69.61 E-value=43 Score=31.12 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=46.7
Q ss_pred EEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCcee
Q 017476 199 WVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKLS 268 (371)
Q Consensus 199 VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~fD 268 (371)
++=.|. +|.++..+++.+. .+.+|+.++.+++.++.+.+.+...+- +.+.++.+|+.+... ...++.|
T Consensus 3 vlItGa-s~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 3 CFVTGA-ASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGG-TVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 444554 5566666655431 357899999998877766655554432 224567788754211 1125689
Q ss_pred EEEEcCCCC
Q 017476 269 GVVSNPPYI 277 (371)
Q Consensus 269 lIvsNPPYi 277 (371)
.+|.|.-+.
T Consensus 81 ~lv~~ag~~ 89 (272)
T PRK07832 81 VVMNIAGIS 89 (272)
T ss_pred EEEECCCCC
Confidence 999987543
No 429
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=69.49 E-value=10 Score=41.24 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=0.0
Q ss_pred CceeEEEEcCCCCCCCCcccchh------------------------------hhcccCccccccCCC-Cc-----HHHH
Q 017476 265 GKLSGVVSNPPYIPSDDISGLQV------------------------------EVGKHEPRLALDGGV-DG-----LDYL 308 (371)
Q Consensus 265 ~~fDlIvsNPPYi~~~~~~~l~~------------------------------ev~~~ep~~aL~gg~-dG-----l~~~ 308 (371)
++||+||.+|||.+.-....+.. ++...+-...-.++. ++ ....
T Consensus 488 ekfd~IVtDPPY~DdVpY~elsDffYvWlkr~l~~i~~~~~e~~~~w~~f~~~ev~~~~~~~~~~~~~~E~a~~~fe~l~ 567 (875)
T COG1743 488 EKFDVIVTDPPYYDDVPYAELSDFFYVWLKRILGRIGGKWLEIATQWQEFAKDEVSTNEGRFVGGGGRKEGAVEEFENLF 567 (875)
T ss_pred ccCceeecCCCcccCCCcccccceeeeehHhhhhhccccccchhhHhHHHhhcccccCcccccCCCcchhHHHHHHHHHH
Q ss_pred HHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc-cccCCceeEEEEe
Q 017476 309 LHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN-DSACSFCNVSIVS 357 (371)
Q Consensus 309 ~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~-~~~~gf~~v~~~~ 357 (371)
.++++.+..+|+++|.++.-. .+.+.+.=..++.. ..++||.-....+
T Consensus 568 ~~a~~~~rEll~ddg~lv~y~-ahk~~eaW~tlveA~~Rragl~iTr~~p 616 (875)
T COG1743 568 REAFQAVRELLKDDGRLVTYY-AHKAPEAWITLVEAGWRRAGLQITRAWP 616 (875)
T ss_pred HHHHHHHHHhcCCCCeEEEEE-eccCccchHHHHHHHhhhcCceeecccc
No 430
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.49 E-value=17 Score=30.25 Aligned_cols=62 Identities=18% Similarity=0.109 Sum_probs=44.1
Q ss_pred CCeEEEECCcccH-HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEE
Q 017476 196 DGFWVDLGTGSGA-IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVS 272 (371)
Q Consensus 196 ~~~VLDlG~GsG~-~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvs 272 (371)
.++|+++|-|-=. .+..|++. +..|+++|+++. ++. ..++++..|.+++--..-...|+|.|
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~-------~a~-----~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK-------TAP-----EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc-------cCc-----ccceEEEccCCCccHHHhhCccceee
Confidence 4599999887653 34444443 478999999986 211 23899999999875444456899998
No 431
>PRK06128 oxidoreductase; Provisional
Probab=69.46 E-value=53 Score=31.16 Aligned_cols=124 Identities=17% Similarity=0.116 Sum_probs=64.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHH--HHHHHHHHHHcCCCCcEEEEEcCcccccc---------c
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLA--AAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------D 262 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~a--l~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~ 262 (371)
.++++|=.| |+|.++..+++.+. .+.+|+.+..+.+. .+...+.+...+ .++.++.+|+.+... .
T Consensus 54 ~~k~vlITG-as~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITG-ADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEec-CCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 356788887 46666666666542 35678777665432 222233333333 347888999865311 1
Q ss_pred CCCceeEEEEcCCCCC-CCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEE
Q 017476 263 VEGKLSGVVSNPPYIP-SDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFE 328 (371)
Q Consensus 263 ~~~~fDlIvsNPPYi~-~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle 328 (371)
..++.|++|.|.-+.. ...+..++.+. ++- .+... +...-.+++.+.+.++++|.+++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~--~~~--~~~~N---~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQ--FDA--TFKTN---VYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHH--HHH--HHHHH---hHHHHHHHHHHHHhcCcCCEEEEE
Confidence 1257899999975432 11121111111 000 00000 111224566667778888887764
No 432
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.24 E-value=46 Score=30.90 Aligned_cols=80 Identities=14% Similarity=0.050 Sum_probs=45.8
Q ss_pred CCCeEEEECC-cccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cC
Q 017476 195 RDGFWVDLGT-GSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DV 263 (371)
Q Consensus 195 ~~~~VLDlG~-GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~ 263 (371)
.++++|=.|. |++.++.++++.+. .+.+|+.++......+..++-.+..+ . ..+++.|+.+.-. ..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG--S-DLVFPCDVASDEQIDALFASLGQH 81 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcC--C-cceeeccCCCHHHHHHHHHHHHHH
Confidence 3567888887 46777777776652 35688877654222222222222222 1 3457778765311 11
Q ss_pred CCceeEEEEcCCCC
Q 017476 264 EGKLSGVVSNPPYI 277 (371)
Q Consensus 264 ~~~fDlIvsNPPYi 277 (371)
.+++|++|.|.-+.
T Consensus 82 ~g~iD~lvnnAG~~ 95 (260)
T PRK06997 82 WDGLDGLVHSIGFA 95 (260)
T ss_pred hCCCcEEEEccccC
Confidence 36899999997543
No 433
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.83 E-value=39 Score=30.39 Aligned_cols=80 Identities=20% Similarity=0.166 Sum_probs=53.8
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAV-DLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gv-Dis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.+++|=.| |+|.++..+++.+. .+.+|+.+ +.+++.++.....+...+ .++.++..|+.+.-. ...
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 34677666 57788887776542 35688888 988877766665555433 358899999865321 001
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
+.+|+||.|.-+..
T Consensus 82 ~~id~vi~~ag~~~ 95 (247)
T PRK05565 82 GKIDILVNNAGISN 95 (247)
T ss_pred CCCCEEEECCCcCC
Confidence 46999999987653
No 434
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=68.77 E-value=23 Score=33.97 Aligned_cols=43 Identities=35% Similarity=0.384 Sum_probs=30.7
Q ss_pred CCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 195 ~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
++.+||-.|+| .|..++.+|+.. ....+++++.++...+.+++
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~-g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLL-GAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHH
Confidence 46688887765 466778888875 22478999988877776654
No 435
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=68.74 E-value=18 Score=31.92 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=38.9
Q ss_pred eeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHH-HHHHhcc
Q 017476 267 LSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFL-KNYLEND 345 (371)
Q Consensus 267 fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v-~~~l~~~ 345 (371)
||+|+.+||+-.......- ....|-+.+. .+.+..+ -+.+++.+||.+++=+. ..+.... .++|.+
T Consensus 1 fdvI~~DPPW~~~~~~~~~--~~~~~Y~tm~-------~~~i~~L--pv~~l~~~~~~lflWvT-n~~~~~~~~~l~~~- 67 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKG--GAEAHYPTMS-------LDEIKSL--PVPQLAAPGALLFLWVT-NSQLPEAKLELFPA- 67 (176)
T ss_pred CCEEEEeCCCCCcCccccc--ccccCCCccC-------HHHHHhC--CHHHhCCCCcEEEEEec-cchhhHHHHHHHHh-
Confidence 7999999998643321100 0001111111 2233322 24567788888888552 3445555 888886
Q ss_pred ccCCceeEE
Q 017476 346 SACSFCNVS 354 (371)
Q Consensus 346 ~~~gf~~v~ 354 (371)
-||+-++
T Consensus 68 --WGf~~~~ 74 (176)
T PF05063_consen 68 --WGFEYVT 74 (176)
T ss_pred --CCCEEEE
Confidence 5676553
No 436
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=68.51 E-value=34 Score=32.70 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=32.6
Q ss_pred CCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 194 LRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 194 ~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
.++.+||=.|. |.|..++.+|+.. +.+|++++.+++-.+.++
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 35678888873 5778888888874 678999999998777764
No 437
>PF05869 Dam: DNA N-6-adenine-methyltransferase (Dam); InterPro: IPR008593 This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences [].; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine
Probab=68.44 E-value=11 Score=33.72 Aligned_cols=11 Identities=45% Similarity=0.821 Sum_probs=8.9
Q ss_pred eEEEEcCCCCC
Q 017476 268 SGVVSNPPYIP 278 (371)
Q Consensus 268 DlIvsNPPYi~ 278 (371)
..|++||||..
T Consensus 65 g~vf~NPPYs~ 75 (181)
T PF05869_consen 65 GRVFCNPPYSR 75 (181)
T ss_pred ceEEecCchhh
Confidence 46899999963
No 438
>PRK05717 oxidoreductase; Validated
Probab=67.88 E-value=47 Score=30.41 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=49.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------c---CC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------D---VE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~---~~ 264 (371)
.++++|=.|. +|.++..+++.+. .+.+|+.+|.++.......+ .. ..++.++..|+.+... . ..
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---AL--GENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---Hc--CCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 4567776664 5777777766552 45799999988765433222 22 2358889999876311 1 12
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+++|++|.|.-+.
T Consensus 83 g~id~li~~ag~~ 95 (255)
T PRK05717 83 GRLDALVCNAAIA 95 (255)
T ss_pred CCCCEEEECCCcc
Confidence 4689999997664
No 439
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=67.43 E-value=14 Score=37.14 Aligned_cols=46 Identities=24% Similarity=0.210 Sum_probs=32.4
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQ 241 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~ 241 (371)
..++.+||-|. +.|+.++.++.. .-.+|++||+|+..+.+.+-.+.
T Consensus 33 i~~~d~vl~It-SaG~N~L~yL~~--~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 33 IGPDDRVLTIT-SAGCNALDYLLA--GPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCeEEEEc-cCCchHHHHHhc--CCceEEEEeCCHHHHHHHHHHHH
Confidence 33567899995 556666666553 34799999999998877665543
No 440
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.20 E-value=34 Score=30.98 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=52.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
+++++|=.|+ +|.++..+++.+. .+.+|+.+|.++..++.+.+.+...+ .++.+++.|..+.-. ...
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567887775 5666666665442 35689999999877766666555443 358888898754211 112
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+.+|.||.|.-+.
T Consensus 81 ~~id~vi~~ag~~ 93 (253)
T PRK08217 81 GQLNGLINNAGIL 93 (253)
T ss_pred CCCCEEEECCCcc
Confidence 5689999997653
No 441
>PLN02253 xanthoxin dehydrogenase
Probab=67.16 E-value=27 Score=32.54 Aligned_cols=78 Identities=18% Similarity=0.092 Sum_probs=50.3
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.| |+|.++..+++.+. .+.+|+.+|.+++..+.....+ +...++.+++.|+.+.-. ...
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSL---GGEPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh---cCCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 355777777 56777777776552 4679999999876654433332 222358899999865311 112
Q ss_pred CceeEEEEcCCC
Q 017476 265 GKLSGVVSNPPY 276 (371)
Q Consensus 265 ~~fDlIvsNPPY 276 (371)
++.|.+|.|.-.
T Consensus 93 g~id~li~~Ag~ 104 (280)
T PLN02253 93 GTLDIMVNNAGL 104 (280)
T ss_pred CCCCEEEECCCc
Confidence 578999998643
No 442
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=67.03 E-value=8.6 Score=38.74 Aligned_cols=118 Identities=18% Similarity=0.189 Sum_probs=63.8
Q ss_pred CeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcc------------cccccC
Q 017476 197 GFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWF------------GKLKDV 263 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~------------~~l~~~ 263 (371)
.+|-=+|= |.+++.+|-.+. .+.+|+|+||++..++.... | +..+..-+.. ....+.
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence 35555554 455555444432 35799999999998875432 1 1122221111 110000
Q ss_pred --CCceeE-EEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC-CcCcHHHHH
Q 017476 264 --EGKLSG-VVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN-GEKQCKFLK 339 (371)
Q Consensus 264 --~~~fDl-IvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~-~~~q~~~v~ 339 (371)
-..-|+ |||=|-.... .++|+ |.......+.+..+|++|-.+++|.. .....+++.
T Consensus 80 ~~l~~~dv~iI~VPTPl~~-----------~~~pD---------ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~ 139 (436)
T COG0677 80 EELKECDVFIICVPTPLKK-----------YREPD---------LSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVV 139 (436)
T ss_pred hhcccCCEEEEEecCCcCC-----------CCCCC---------hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH
Confidence 014454 4553422211 24554 55667788888999999999999973 223445555
Q ss_pred HHHhc
Q 017476 340 NYLEN 344 (371)
Q Consensus 340 ~~l~~ 344 (371)
..+.+
T Consensus 140 ~plle 144 (436)
T COG0677 140 KPLLE 144 (436)
T ss_pred HHHHh
Confidence 44443
No 443
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=66.75 E-value=77 Score=34.29 Aligned_cols=82 Identities=20% Similarity=0.044 Sum_probs=52.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|+ +|.++..+++.+. .+.+|+++|.+.+.++...+.+....-.+++.+++.|+.+.-. ...
T Consensus 413 ~gkvvLVTGa-sggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 413 ARRVAFVTGG-AGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4566776665 5666667666542 4679999999988776655544322112347788999865311 012
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+.+|++|.|.-+.
T Consensus 492 g~iDilV~nAG~~ 504 (676)
T TIGR02632 492 GGVDIVVNNAGIA 504 (676)
T ss_pred CCCcEEEECCCCC
Confidence 5789999997653
No 444
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=66.50 E-value=84 Score=29.68 Aligned_cols=107 Identities=15% Similarity=0.038 Sum_probs=62.9
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEcCccccccc-C-CCce-----
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGL--QDIIEIRQGSWFGKLKD-V-EGKL----- 267 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl--~~~v~~~~gD~~~~l~~-~-~~~f----- 267 (371)
..|+.||||-=.-+..+.. .++.+++=||. |+.++.-++-+...+. .++.+++..|+.+.+.. + ...|
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~--~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPW--PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred cEEEEeCCccccHHHhcCC--CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 4699999998777665532 13456776666 4566666666665543 35688888887522110 0 0112
Q ss_pred eEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 268 SGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 268 DlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
-++++ ..+..|-+ -+....+++.+.+...||+.++++..
T Consensus 160 tl~i~--------------EGvl~YL~----------~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 160 TAWLW--------------EGLLMYLT----------EEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred eeeee--------------cchhhcCC----------HHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 23333 11111211 13355788888777779999999874
No 445
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=66.44 E-value=19 Score=34.46 Aligned_cols=79 Identities=15% Similarity=0.049 Sum_probs=48.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc--cCCCceeEEEE
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK--DVEGKLSGVVS 272 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~--~~~~~fDlIvs 272 (371)
+++||-.| |+|.++..+++.+. .+.+|+++..++.............+...+++++.+|+.+... ..-...|.||.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 45788777 67888888887652 3568888776665433222211112223468999999876421 11235899998
Q ss_pred cCC
Q 017476 273 NPP 275 (371)
Q Consensus 273 NPP 275 (371)
|--
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 754
No 446
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=66.32 E-value=47 Score=30.69 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=31.7
Q ss_pred CCCCeEEEECCcc-cHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHH
Q 017476 194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGS-IIAVDLNPLAAAVAAF 238 (371)
Q Consensus 194 ~~~~~VLDlG~Gs-G~~al~la~~~~~~~~-V~gvDis~~al~~A~~ 238 (371)
.++.++|=.|+|. |..++.+|+.. +.+ |++++.+++.++.+++
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEA 140 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHH
Confidence 3566788888765 66777778875 455 9999999988776654
No 447
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.13 E-value=10 Score=37.18 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=33.1
Q ss_pred CCCeEEEECC-cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCC
Q 017476 195 RDGFWVDLGT-GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQ 246 (371)
Q Consensus 195 ~~~~VLDlG~-GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~ 246 (371)
+++++-=.|. |-|.+++.+|+++ +.+|+++|-+..--+.|- +.+|-+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~---~~LGAd 228 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAI---KSLGAD 228 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHH---HhcCcc
Confidence 5566555554 4899999999997 689999999975444433 345544
No 448
>PLN02827 Alcohol dehydrogenase-like
Probab=66.12 E-value=15 Score=36.52 Aligned_cols=45 Identities=29% Similarity=0.266 Sum_probs=30.4
Q ss_pred CCCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 193 GLRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 193 ~~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
..++.+||=.|+| .|.+++.+|+.. ....|+++|.+++..+.|++
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHH
Confidence 3456788888764 344556667764 22369999999988777643
No 449
>PRK07774 short chain dehydrogenase; Provisional
Probab=65.83 E-value=34 Score=31.00 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.| |+|.++..+++.+ ..+.+|+.++.++..++.....+...+ .++.++..|..+... ...+
T Consensus 6 ~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK07774 6 DKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAFG 82 (250)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 45777776 6677777777654 245799999998876655554443322 347788888865321 0124
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
.+|+||.|-.+.
T Consensus 83 ~id~vi~~ag~~ 94 (250)
T PRK07774 83 GIDYLVNNAAIY 94 (250)
T ss_pred CCCEEEECCCCc
Confidence 689999987764
No 450
>PRK12939 short chain dehydrogenase; Provisional
Probab=65.72 E-value=64 Score=29.08 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=52.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.| |+|.++..+++.+. .+.+|++++.+++.+....+.++..+ .++.++++|+.+... ...+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 45777555 57788888877652 35689999998887766555554333 358999999875321 0015
Q ss_pred ceeEEEEcCCC
Q 017476 266 KLSGVVSNPPY 276 (371)
Q Consensus 266 ~fDlIvsNPPY 276 (371)
++|.||.|--+
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 78999988544
No 451
>PRK10904 DNA adenine methylase; Provisional
Probab=65.54 E-value=29 Score=32.97 Aligned_cols=82 Identities=13% Similarity=0.158 Sum_probs=47.5
Q ss_pred cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 248 ~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
++++.++|+.+.+... ..=|+|.++|||.......... . +..+.-+.+...++.+.+...-..||.+++
T Consensus 157 ~v~i~~~Df~~~i~~~-~~~~fvYlDPPY~~~~~~~~f~----~------y~~~~f~~~dh~~La~~l~~l~~~~~k~il 225 (271)
T PRK10904 157 NAFFYCESYADSMARA-DKGSVVYCDPPYAPLSATANFT----A------YHTNSFSLEQQAHLAEIAEGLVERHIPVLI 225 (271)
T ss_pred CCEEEECCHHHHHhhc-CCCcEEEECCCCCCCCCCCCCc----C------cccCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3899999997766542 4568999999997532211000 0 001111234444555444444456778888
Q ss_pred EECCcCcHHHHHHHHh
Q 017476 328 ETNGEKQCKFLKNYLE 343 (371)
Q Consensus 328 e~~~~~q~~~v~~~l~ 343 (371)
... ..+.++++.+
T Consensus 226 S~~---d~~~i~elY~ 238 (271)
T PRK10904 226 SNH---DTMLTREWYQ 238 (271)
T ss_pred EeC---CCHHHHHHHc
Confidence 773 3466888875
No 452
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=65.48 E-value=72 Score=28.51 Aligned_cols=80 Identities=20% Similarity=0.097 Sum_probs=52.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
+++||=.|+ +|.++..+++.+. .+.+|++++-++...+.....+...+ .++.++.+|+.+.-. ...+
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAFG 81 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 357886664 7888888877642 35579999999877665544444333 348888899865311 0124
Q ss_pred ceeEEEEcCCCCC
Q 017476 266 KLSGVVSNPPYIP 278 (371)
Q Consensus 266 ~fDlIvsNPPYi~ 278 (371)
..|.|+.|.-+..
T Consensus 82 ~id~vi~~ag~~~ 94 (246)
T PRK05653 82 ALDILVNNAGITR 94 (246)
T ss_pred CCCEEEECCCcCC
Confidence 6799999875543
No 453
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=65.14 E-value=65 Score=29.11 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=53.1
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.|+ +|.++..+++.+. .+.+|+.++.+......+...+...+ .++.++.+|+.+.-. ...+
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 456777774 5677777766542 35689999999887766666555433 358899999865311 1124
Q ss_pred ceeEEEEcCCCCC
Q 017476 266 KLSGVVSNPPYIP 278 (371)
Q Consensus 266 ~fDlIvsNPPYi~ 278 (371)
+.|++|.|..+..
T Consensus 80 ~~d~vi~~ag~~~ 92 (250)
T TIGR03206 80 PVDVLVNNAGWDK 92 (250)
T ss_pred CCCEEEECCCCCC
Confidence 6899999987643
No 454
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=64.95 E-value=92 Score=28.58 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=48.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
+++++|=.|+ +|.++..+++.+. .+.+|+.++.+++.++...+. . ..++.+++.|..+... ...
T Consensus 5 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 5 HGQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQR---F--GDHVLVVEGDVTSYADNQRAVDQTVDAF 78 (263)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---h--CCcceEEEccCCCHHHHHHHHHHHHHhc
Confidence 3557888775 4555666555432 467899999998766544332 1 2357888888765311 112
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
+++|++|.|.-+.
T Consensus 79 g~id~li~~ag~~ 91 (263)
T PRK06200 79 GKLDCFVGNAGIW 91 (263)
T ss_pred CCCCEEEECCCCc
Confidence 5789999997654
No 455
>PRK12743 oxidoreductase; Provisional
Probab=64.71 E-value=78 Score=28.98 Aligned_cols=78 Identities=18% Similarity=0.038 Sum_probs=49.3
Q ss_pred CeEEEECCcccHHHHHHHHHh-CCCcEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVD-LNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~-~~~~~V~gvD-is~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
+++|=.|+ +|.++..+++.+ ..+.+|+.++ .+...++.+.+.+...+ .++.++..|+.+.-. ...+
T Consensus 3 k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 3 QVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46777785 566777777764 2356787765 45555555555554444 358899999865311 1125
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
+.|.||.|.-+.
T Consensus 80 ~id~li~~ag~~ 91 (256)
T PRK12743 80 RIDVLVNNAGAM 91 (256)
T ss_pred CCCEEEECCCCC
Confidence 789999997554
No 456
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=64.61 E-value=85 Score=28.36 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=49.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|++ |.++..+++.+. .+.+|++++.++. ..+.+.+...+ .++.++..|+.+... ...
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45678888775 556666666542 3568999997652 22333333333 458899999865321 112
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
++.|.+|.|.-+..
T Consensus 79 ~~~d~li~~ag~~~ 92 (248)
T TIGR01832 79 GHIDILVNNAGIIR 92 (248)
T ss_pred CCCCEEEECCCCCC
Confidence 57999999976543
No 457
>PRK07035 short chain dehydrogenase; Provisional
Probab=64.57 E-value=55 Score=29.75 Aligned_cols=79 Identities=16% Similarity=0.079 Sum_probs=50.9
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.|++ |.++..+++.+. .+.+|++++.+.+.++...+.+...+ .++.+++.|+.+... ...+
T Consensus 8 ~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 8 GKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4567777755 555555555431 35699999999887776666655443 247788888754311 1124
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
++|++|.|..+.
T Consensus 85 ~id~li~~ag~~ 96 (252)
T PRK07035 85 RLDILVNNAAAN 96 (252)
T ss_pred CCCEEEECCCcC
Confidence 689999987654
No 458
>PRK07985 oxidoreductase; Provisional
Probab=64.48 E-value=62 Score=30.67 Aligned_cols=79 Identities=13% Similarity=-0.003 Sum_probs=47.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEcCccccc---------cc
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNP--LAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KD 262 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~--~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~ 262 (371)
.++++|-.|. +|.++..+++.+. .+.+|+.++.+. +.++...+.....+ .++.++..|+.+.- ..
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4568888885 5666666665542 456888877543 33333333333333 34788889886531 11
Q ss_pred CCCceeEEEEcCCC
Q 017476 263 VEGKLSGVVSNPPY 276 (371)
Q Consensus 263 ~~~~fDlIvsNPPY 276 (371)
..+..|.+|.|.-+
T Consensus 125 ~~g~id~lv~~Ag~ 138 (294)
T PRK07985 125 ALGGLDIMALVAGK 138 (294)
T ss_pred HhCCCCEEEECCCC
Confidence 13578999998654
No 459
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=64.33 E-value=1.1e+02 Score=27.64 Aligned_cols=80 Identities=23% Similarity=0.162 Sum_probs=51.6
Q ss_pred eEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCce
Q 017476 198 FWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKL 267 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~f 267 (371)
++|=.| |+|.++..+++.+ ..+.+|+.++.++..++...+.+...+ .++.++.+|+.+.-. ...+..
T Consensus 2 ~~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 455566 4677777776654 246789999998876665555554443 358889999865311 112468
Q ss_pred eEEEEcCCCCCCC
Q 017476 268 SGVVSNPPYIPSD 280 (371)
Q Consensus 268 DlIvsNPPYi~~~ 280 (371)
|++|.|.......
T Consensus 79 d~vi~~ag~~~~~ 91 (254)
T TIGR02415 79 DVMVNNAGVAPIT 91 (254)
T ss_pred CEEEECCCcCCCC
Confidence 9999998765433
No 460
>PRK05650 short chain dehydrogenase; Provisional
Probab=64.23 E-value=50 Score=30.59 Aligned_cols=78 Identities=12% Similarity=-0.028 Sum_probs=51.5
Q ss_pred eEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCCce
Q 017476 198 FWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEGKL 267 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~~f 267 (371)
++|=.| |+|.++..+++.+ ..+.+|+.++.+.+.++.+...+...+ .++.++.+|+.+... ...+.+
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 466555 4666777776654 235689999999887776666555443 348889999865321 112579
Q ss_pred eEEEEcCCCCC
Q 017476 268 SGVVSNPPYIP 278 (371)
Q Consensus 268 DlIvsNPPYi~ 278 (371)
|.+|.|.-...
T Consensus 79 d~lI~~ag~~~ 89 (270)
T PRK05650 79 DVIVNNAGVAS 89 (270)
T ss_pred CEEEECCCCCC
Confidence 99999976543
No 461
>PRK08226 short chain dehydrogenase; Provisional
Probab=64.20 E-value=99 Score=28.27 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=50.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|+ +|.++..+++.+ ..+.+|+.++.+....+.+.+ ....+ .++.++.+|+.+... ...
T Consensus 5 ~~~~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 5 TGKTALITGA-LQGIGEGIARVFARHGANLILLDISPEIEKLADE-LCGRG--HRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH-HHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3567887665 566666666654 246789999998764443332 22223 347888999865311 112
Q ss_pred CceeEEEEcCCCCCC
Q 017476 265 GKLSGVVSNPPYIPS 279 (371)
Q Consensus 265 ~~fDlIvsNPPYi~~ 279 (371)
+..|++|.|.-+...
T Consensus 81 ~~id~vi~~ag~~~~ 95 (263)
T PRK08226 81 GRIDILVNNAGVCRL 95 (263)
T ss_pred CCCCEEEECCCcCCC
Confidence 578999998765433
No 462
>PRK06182 short chain dehydrogenase; Validated
Probab=63.88 E-value=48 Score=30.77 Aligned_cols=75 Identities=16% Similarity=0.052 Sum_probs=48.9
Q ss_pred CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
+++++=.| |+|.++..+++.+ ..+.+|++++.+++.++... .. .++++.+|..+... ...+
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~~----~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----SL----GVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----hC----CCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 34677666 4566777777764 24678999999887654322 11 37788888765311 0125
Q ss_pred ceeEEEEcCCCCCC
Q 017476 266 KLSGVVSNPPYIPS 279 (371)
Q Consensus 266 ~fDlIvsNPPYi~~ 279 (371)
.+|++|.|..+...
T Consensus 74 ~id~li~~ag~~~~ 87 (273)
T PRK06182 74 RIDVLVNNAGYGSY 87 (273)
T ss_pred CCCEEEECCCcCCC
Confidence 78999999876543
No 463
>PRK12746 short chain dehydrogenase; Provisional
Probab=63.83 E-value=58 Score=29.63 Aligned_cols=79 Identities=15% Similarity=0.031 Sum_probs=46.2
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc------cC----
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAV-DLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK------DV---- 263 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gv-Dis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~------~~---- 263 (371)
+++++=.| |+|.++..+++.+. .+.+|+.+ ..+.+.++.....+...+ .++.++++|+.+... ..
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~~ 82 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNEL 82 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence 45788666 57888888887652 34566553 455544433333332222 348889999865321 00
Q ss_pred -----CCceeEEEEcCCCC
Q 017476 264 -----EGKLSGVVSNPPYI 277 (371)
Q Consensus 264 -----~~~fDlIvsNPPYi 277 (371)
.+..|.||.|+=+.
T Consensus 83 ~~~~~~~~id~vi~~ag~~ 101 (254)
T PRK12746 83 QIRVGTSEIDILVNNAGIG 101 (254)
T ss_pred ccccCCCCccEEEECCCCC
Confidence 13689999987543
No 464
>PRK06197 short chain dehydrogenase; Provisional
Probab=63.82 E-value=56 Score=31.00 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=52.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.+++||=.| |+|.++..+++.+. .+.+|+.++.+.+..+.+.+.+....-..++.++..|+.+.-. ...
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 355777655 56777777776542 3568999999887766665555433212358899999865311 112
Q ss_pred CceeEEEEcCCC
Q 017476 265 GKLSGVVSNPPY 276 (371)
Q Consensus 265 ~~fDlIvsNPPY 276 (371)
+++|++|.|.-.
T Consensus 94 ~~iD~li~nAg~ 105 (306)
T PRK06197 94 PRIDLLINNAGV 105 (306)
T ss_pred CCCCEEEECCcc
Confidence 579999998654
No 465
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=63.50 E-value=20 Score=36.90 Aligned_cols=122 Identities=13% Similarity=0.146 Sum_probs=69.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHhCCCcEEE------EEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCcee
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLGSKGSII------AVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLS 268 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~~~~~V~------gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fD 268 (371)
.+++|+=+|||+=..+.++--+- .+.+|+ ++|.+....+.|.. .|+. .++..+.+ .+.|
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrd-SGvnVvvglr~~~id~~~~s~~kA~~----dGF~------v~~~~Ea~----~~AD 99 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRD-SGLDISYALRKEAIAEKRASWRKATE----NGFK------VGTYEELI----PQAD 99 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCcc-ccceeEEeccccccccccchHHHHHh----cCCc------cCCHHHHH----HhCC
Confidence 46799999998754433222111 233444 44554555555443 3542 13332322 4689
Q ss_pred EEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC------------------
Q 017476 269 GVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN------------------ 330 (371)
Q Consensus 269 lIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~------------------ 330 (371)
+|+.=-| .+. . ..+.+.....||+|..|.+.|+
T Consensus 100 vVviLlP-----------Dt~-q-----------------~~v~~~i~p~LK~Ga~L~fsHGFni~~~~i~~~~dvdVim 150 (487)
T PRK05225 100 LVINLTP-----------DKQ-H-----------------SDVVRAVQPLMKQGAALGYSHGFNIVEVGEQIRKDITVVM 150 (487)
T ss_pred EEEEcCC-----------hHH-H-----------------HHHHHHHHhhCCCCCEEEecCCceeeeCceeCCCCCcEEE
Confidence 9987222 110 1 1344666789999999998764
Q ss_pred --CcCcHHHHHHHHhccccCCc-eeEEEE--ecCCCC
Q 017476 331 --GEKQCKFLKNYLENDSACSF-CNVSIV--SDFAGI 362 (371)
Q Consensus 331 --~~~q~~~v~~~l~~~~~~gf-~~v~~~--~Dl~g~ 362 (371)
+...+..|++.+.+ ..|. ..+-++ .|..|+
T Consensus 151 vAPKgpG~~vR~~y~~--G~Gvp~l~AV~~~qD~~g~ 185 (487)
T PRK05225 151 VAPKCPGTEVREEYKR--GFGVPTLIAVHPENDPKGE 185 (487)
T ss_pred ECCCCCCchHHHHHhc--CCCceEEEEEeecCCCCch
Confidence 33456778888874 2222 456677 688775
No 466
>PRK05855 short chain dehydrogenase; Validated
Probab=63.46 E-value=73 Score=32.86 Aligned_cols=79 Identities=18% Similarity=0.077 Sum_probs=53.6
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
..++|=.| |+|.++..+++++. .+.+|+.++.+...++.+.+.++..+. ++.++..|+.+... ...+
T Consensus 315 ~~~~lv~G-~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 315 GKLVVVTG-AGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCEEEEEC-CcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 45666555 47777777776652 456899999998887766666655553 48899999876421 1135
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
.+|++|.|.=..
T Consensus 392 ~id~lv~~Ag~~ 403 (582)
T PRK05855 392 VPDIVVNNAGIG 403 (582)
T ss_pred CCcEEEECCccC
Confidence 789999996543
No 467
>PRK06138 short chain dehydrogenase; Provisional
Probab=63.24 E-value=59 Score=29.42 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=52.0
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.|+ +|.++..+++.+. .+.+|++++.+.+.+........ . ..++.++.+|+.+... ...+
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 80 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVAARWG 80 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 457777776 5666666666432 35689999998877665555443 2 3458899999865321 0125
Q ss_pred ceeEEEEcCCCCC
Q 017476 266 KLSGVVSNPPYIP 278 (371)
Q Consensus 266 ~fDlIvsNPPYi~ 278 (371)
++|+||.|..+..
T Consensus 81 ~id~vi~~ag~~~ 93 (252)
T PRK06138 81 RLDVLVNNAGFGC 93 (252)
T ss_pred CCCEEEECCCCCC
Confidence 7899999877653
No 468
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=63.24 E-value=94 Score=28.06 Aligned_cols=80 Identities=16% Similarity=0.065 Sum_probs=49.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVD-LNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvD-is~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
++++|-.| |+|.++..+++.+. .+.+|+.+. .+++..+.....+...+ .++.++..|+.+... ...
T Consensus 6 ~~~~lItG-~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK12935 6 GKVAIVTG-GAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNHF 82 (247)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56888888 67888888877652 356777654 34554443333333333 358899999865321 012
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
+..|.||.|.-+..
T Consensus 83 ~~id~vi~~ag~~~ 96 (247)
T PRK12935 83 GKVDILVNNAGITR 96 (247)
T ss_pred CCCCEEEECCCCCC
Confidence 56899999976643
No 469
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=63.20 E-value=35 Score=33.05 Aligned_cols=44 Identities=30% Similarity=0.308 Sum_probs=30.7
Q ss_pred CCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 194 ~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
.++.+||=.|+| .|..++.+|+.. ....|+++|.+++..+.+++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~-G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLR-GAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHH
Confidence 346678887765 455666777764 22369999999988777764
No 470
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=63.15 E-value=16 Score=36.90 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=49.1
Q ss_pred CeEEEECCcccHHHHHHHHHhC--CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccc--cccCCCceeEEEE
Q 017476 197 GFWVDLGTGSGAIAIGIARVLG--SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGK--LKDVEGKLSGVVS 272 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~--~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~--l~~~~~~fDlIvs 272 (371)
.+||=||| |.++..+|..+. ...+|+..|.+.+.++.+..+.. .+++.++-|..+. +...-..+|+||+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEE
Confidence 36899999 555555555432 23699999999988877766532 2588888888653 2122245688877
Q ss_pred c-CCCCC
Q 017476 273 N-PPYIP 278 (371)
Q Consensus 273 N-PPYi~ 278 (371)
- |||+.
T Consensus 75 ~~p~~~~ 81 (389)
T COG1748 75 AAPPFVD 81 (389)
T ss_pred eCCchhh
Confidence 5 55543
No 471
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=63.15 E-value=9 Score=37.30 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 303 DGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 303 dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
+-++.++.+++.+..+|+|||++++..-+.--...|++.|++
T Consensus 214 ~EL~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~~f~~ 255 (305)
T TIGR00006 214 DELEELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKNFFRE 255 (305)
T ss_pred HhHHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHH
Confidence 447888999999999999999999998443344456666765
No 472
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=62.78 E-value=85 Score=28.72 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=48.1
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|+ +|.++.++++.+. .+.+|+++|.+.. +...+.+...+ .++..++.|..+.-. ...
T Consensus 9 ~~k~~lItG~-~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 9 EGKVAVVTGC-DTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 3567777775 5677777777552 3678999987653 22223333333 357888999865211 112
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
++.|++|.|.=+.
T Consensus 84 ~~~D~li~~Ag~~ 96 (253)
T PRK08993 84 GHIDILVNNAGLI 96 (253)
T ss_pred CCCCEEEECCCCC
Confidence 5799999997654
No 473
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=62.34 E-value=8 Score=37.72 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=35.2
Q ss_pred CCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhcc
Q 017476 302 VDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEND 345 (371)
Q Consensus 302 ~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~ 345 (371)
.+-++.+..++..+..+|+|||++++..-+.--...|++.|++.
T Consensus 214 N~EL~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~~ 257 (310)
T PF01795_consen 214 NDELEELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFREL 257 (310)
T ss_dssp CTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHHh
Confidence 34578899999999999999999999995444455677888864
No 474
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=62.20 E-value=20 Score=33.47 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=45.1
Q ss_pred CCCCCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccc
Q 017476 193 GLRDGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFG 258 (371)
Q Consensus 193 ~~~~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~ 258 (371)
.....-|.++|.|.|.++..+... ...+...||++...+.-.+.-.+.. +.+..++.+|.+.
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLR 109 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcC--CcceEEeccccce
Confidence 345668999999999999999875 4568899999987766555443322 3357778887653
No 475
>PRK06194 hypothetical protein; Provisional
Probab=62.12 E-value=73 Score=29.65 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=51.1
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.| |+|.++..+++.+. .+.+|+.+|.+.+.++.....+...+ .++.++.+|+.+.-. ...+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45777555 55677777766542 46789999998877665554444333 248889999865311 0124
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
.+|+||.|.-..
T Consensus 83 ~id~vi~~Ag~~ 94 (287)
T PRK06194 83 AVHLLFNNAGVG 94 (287)
T ss_pred CCCEEEECCCCC
Confidence 689999987654
No 476
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=62.08 E-value=43 Score=32.25 Aligned_cols=44 Identities=5% Similarity=-0.069 Sum_probs=33.7
Q ss_pred CCCCCeEEEECC--cccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 193 GLRDGFWVDLGT--GSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 193 ~~~~~~VLDlG~--GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
..++.+||=.|+ |.|.+++.+|+.. +.+|++++.+++-.+.+++
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~ 194 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKN 194 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 345678888885 5777888888874 6789999999887777664
No 477
>PRK06101 short chain dehydrogenase; Provisional
Probab=61.88 E-value=95 Score=28.13 Aligned_cols=73 Identities=11% Similarity=-0.150 Sum_probs=44.9
Q ss_pred eEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc------ccCCCceeEE
Q 017476 198 FWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------KDVEGKLSGV 270 (371)
Q Consensus 198 ~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l------~~~~~~fDlI 270 (371)
++|=.| |+|.++..+++.+. .+.+|+.++.+++.++...+ .+ .++.++.+|+.+.- .......|.+
T Consensus 3 ~vlItG-as~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~ 75 (240)
T PRK06101 3 AVLITG-ATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT----QS--ANIFTLAFDVTDHPGTKAALSQLPFIPELW 75 (240)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----hc--CCCeEEEeeCCCHHHHHHHHHhcccCCCEE
Confidence 455444 46777777776652 46789999999876543322 11 24788889886531 1112245888
Q ss_pred EEcCCCC
Q 017476 271 VSNPPYI 277 (371)
Q Consensus 271 vsNPPYi 277 (371)
+.|....
T Consensus 76 i~~ag~~ 82 (240)
T PRK06101 76 IFNAGDC 82 (240)
T ss_pred EEcCccc
Confidence 8887543
No 478
>PRK05866 short chain dehydrogenase; Provisional
Probab=61.83 E-value=53 Score=31.18 Aligned_cols=77 Identities=14% Similarity=0.007 Sum_probs=51.1
Q ss_pred CCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.|+ +|.++..+++.+ ..+.+|+.++.+.+.++...+.+...+ .++.++.+|+.+.-. ...+
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 116 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIG 116 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 457887775 455666666544 235799999999888776666554443 347888999865311 1125
Q ss_pred ceeEEEEcCC
Q 017476 266 KLSGVVSNPP 275 (371)
Q Consensus 266 ~fDlIvsNPP 275 (371)
..|++|.|.-
T Consensus 117 ~id~li~~AG 126 (293)
T PRK05866 117 GVDILINNAG 126 (293)
T ss_pred CCCEEEECCC
Confidence 7899999864
No 479
>PRK05993 short chain dehydrogenase; Provisional
Probab=61.58 E-value=79 Score=29.46 Aligned_cols=73 Identities=19% Similarity=0.054 Sum_probs=47.8
Q ss_pred CeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc------c----cCCC
Q 017476 197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL------K----DVEG 265 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l------~----~~~~ 265 (371)
+++|=.|+ +|.++..+++.+ ..+.+|++++.+++.++.... . .++++..|+.+.. . ...+
T Consensus 5 k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~----~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 5 RSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E----GLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C----CceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46777775 577777777654 246799999999877654322 2 2678888886531 1 1125
Q ss_pred ceeEEEEcCCCCC
Q 017476 266 KLSGVVSNPPYIP 278 (371)
Q Consensus 266 ~fDlIvsNPPYi~ 278 (371)
..|++|.|.-+..
T Consensus 76 ~id~li~~Ag~~~ 88 (277)
T PRK05993 76 RLDALFNNGAYGQ 88 (277)
T ss_pred CccEEEECCCcCC
Confidence 7899999975543
No 480
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.44 E-value=90 Score=29.78 Aligned_cols=79 Identities=18% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCH-HHHHHHHHHHHHcCCCCcEEEEEcCccccc---------ccC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNP-LAAAVAAFNAQRYGLQDIIEIRQGSWFGKL---------KDV 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~-~al~~A~~n~~~~gl~~~v~~~~gD~~~~l---------~~~ 263 (371)
+++++|=.|++. .++..+++.+ ..+.+|+.+|.+. ..++.+.+.+...+ .++.++.+|+.+.- ..
T Consensus 11 ~~k~~lVTGas~-gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~- 86 (306)
T PRK07792 11 SGKVAVVTGAAA-GLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVG- 86 (306)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHH-
Confidence 466788777665 4455555443 1367899998753 34444444444333 35888999986531 11
Q ss_pred CCceeEEEEcCCCC
Q 017476 264 EGKLSGVVSNPPYI 277 (371)
Q Consensus 264 ~~~fDlIvsNPPYi 277 (371)
.+++|++|.|.-+.
T Consensus 87 ~g~iD~li~nAG~~ 100 (306)
T PRK07792 87 LGGLDIVVNNAGIT 100 (306)
T ss_pred hCCCCEEEECCCCC
Confidence 26799999986554
No 481
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=61.39 E-value=41 Score=35.73 Aligned_cols=79 Identities=15% Similarity=0.034 Sum_probs=50.7
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCC-------CCcEEEEEcCccccc--ccCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGL-------QDIIEIRQGSWFGKL--KDVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl-------~~~v~~~~gD~~~~l--~~~~ 264 (371)
.+++||-.| |+|.++..+++++ ..+.+|++++.+.+.+.....++...++ ..++.++.+|+.+.. ...-
T Consensus 79 ~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 455666665 4677777777654 2467899999998776655444433211 135889999997632 1123
Q ss_pred CceeEEEEcC
Q 017476 265 GKLSGVVSNP 274 (371)
Q Consensus 265 ~~fDlIvsNP 274 (371)
+..|+||+|-
T Consensus 158 ggiDiVVn~A 167 (576)
T PLN03209 158 GNASVVICCI 167 (576)
T ss_pred cCCCEEEEcc
Confidence 5689999874
No 482
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=61.25 E-value=70 Score=29.29 Aligned_cols=80 Identities=16% Similarity=0.084 Sum_probs=48.6
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~ 264 (371)
.++++|=.|++ |.++..+++.+ ..+.+|+.++.+. ..+.+.+.....+ .++.++.+|+.+... ...
T Consensus 14 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 14 DGKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45678877765 45555555543 2467888888873 3333443343333 358889999865321 112
Q ss_pred CceeEEEEcCCCCC
Q 017476 265 GKLSGVVSNPPYIP 278 (371)
Q Consensus 265 ~~fDlIvsNPPYi~ 278 (371)
+.+|.+|.|.-+..
T Consensus 90 g~id~li~~ag~~~ 103 (258)
T PRK06935 90 GKIDILVNNAGTIR 103 (258)
T ss_pred CCCCEEEECCCCCC
Confidence 57899999976643
No 483
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=61.02 E-value=20 Score=34.37 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=32.1
Q ss_pred CCCCeEEEECCcc-cHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 194 LRDGFWVDLGTGS-GAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 194 ~~~~~VLDlG~Gs-G~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
.++.+||-.|+|. |..++.+|+.. +.+|+++..+++..+.++
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFAR 200 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHH
Confidence 3566888888764 77888888874 678999988887776664
No 484
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=60.85 E-value=32 Score=32.79 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=30.5
Q ss_pred CCCCeEEEECCc-ccHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHH
Q 017476 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGS-IIAVDLNPLAAAVAA 237 (371)
Q Consensus 194 ~~~~~VLDlG~G-sG~~al~la~~~~~~~~-V~gvDis~~al~~A~ 237 (371)
.++.+||-.|+| .|..++.+|+.. +.+ |++++.+++..+.++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAK 201 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHH
Confidence 356788888865 366777777764 455 899999988777664
No 485
>PRK09291 short chain dehydrogenase; Provisional
Probab=60.85 E-value=71 Score=29.03 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=50.4
Q ss_pred CeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---cCCCceeEEEE
Q 017476 197 GFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---DVEGKLSGVVS 272 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---~~~~~fDlIvs 272 (371)
++||=.|+ +|.++..+++.+ ..+.+|++++.++...+..+......+. ++.++.+|+.+... ...+..|+||.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 36776665 566666666554 2467899999888766555554444443 48889999866321 11347999999
Q ss_pred cCCCC
Q 017476 273 NPPYI 277 (371)
Q Consensus 273 NPPYi 277 (371)
|.-+.
T Consensus 80 ~ag~~ 84 (257)
T PRK09291 80 NAGIG 84 (257)
T ss_pred CCCcC
Confidence 86543
No 486
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=60.84 E-value=37 Score=32.11 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=46.1
Q ss_pred cEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhhhcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEE
Q 017476 248 IIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVEVGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAF 327 (371)
Q Consensus 248 ~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~ev~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvl 327 (371)
++++.++|+.+.+.. ..+=|+|.++|||.....-.... . +....-+.++..++.+.+.+.=..|+.+++
T Consensus 155 ~v~i~~~Df~~~i~~-~~~~dfvYlDPPY~~~~~~~~f~----~------y~~~~f~~~dh~~L~~~l~~l~~~~~~~~l 223 (266)
T TIGR00571 155 NTTFLCGSFEKILAM-VDDDSFVYCDPPYLPLSATYNFT----G------YHTNGFDEDEQKRLANFCKSLDERGIKFLL 223 (266)
T ss_pred CCEEEECCHHHHHhh-cCCCCEEEECCCCCCCCCCCCcc----C------ccCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 489999999776543 24457999999997532211000 0 001111234445565555443235667777
Q ss_pred EECCcCcHHHHHHHHh
Q 017476 328 ETNGEKQCKFLKNYLE 343 (371)
Q Consensus 328 e~~~~~q~~~v~~~l~ 343 (371)
... ..+.+++++.
T Consensus 224 S~~---~~~~i~ely~ 236 (266)
T TIGR00571 224 SNS---DSSFTRELYQ 236 (266)
T ss_pred EeC---CCHHHHHHhc
Confidence 663 3456788875
No 487
>PRK09186 flagellin modification protein A; Provisional
Probab=60.49 E-value=56 Score=29.70 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=49.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.|+ +|.++..+++.+. .+.+|++++.+++.++.+.+.+....-...+.++.+|+.+.-. ...+
T Consensus 4 ~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 4 GKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 456777776 4567766666542 4578999999988777666555332112346777889865311 1124
Q ss_pred ceeEEEEcC
Q 017476 266 KLSGVVSNP 274 (371)
Q Consensus 266 ~fDlIvsNP 274 (371)
..|++|.|.
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 589999985
No 488
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=60.48 E-value=21 Score=33.85 Aligned_cols=36 Identities=25% Similarity=0.507 Sum_probs=29.8
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC----CCcEEEEEeCCH
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG----SKGSIIAVDLNP 230 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~----~~~~V~gvDis~ 230 (371)
+...++|+|||.|.++..+++.+. +...++.||...
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 456899999999999999999762 346899999855
No 489
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=59.85 E-value=12 Score=36.37 Aligned_cols=42 Identities=24% Similarity=0.388 Sum_probs=32.3
Q ss_pred CcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhc
Q 017476 303 DGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLEN 344 (371)
Q Consensus 303 dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~ 344 (371)
+-++.++.++..+..+|+|||++++..-+.--...|+..|++
T Consensus 210 ~El~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~f~~ 251 (296)
T PRK00050 210 DELEELERALEAALDLLKPGGRLAVISFHSLEDRIVKRFFRE 251 (296)
T ss_pred hhHHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHH
Confidence 447888999999999999999999998443334455666764
No 490
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=59.74 E-value=29 Score=32.30 Aligned_cols=73 Identities=18% Similarity=0.134 Sum_probs=48.0
Q ss_pred CCCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc----------ccC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL----------KDV 263 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l----------~~~ 263 (371)
.++.||=.||.+|.++-++|++|. .+.+|++.--+-+-..... ...| +...+-|..++- ...
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~---~~~g----l~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA---IQFG----LKPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHH---HhhC----CeeEEeccCChHHHHHHHHHHhhCC
Confidence 356899999999999999999874 3557888765544322221 1233 455666654321 123
Q ss_pred CCceeEEEEcC
Q 017476 264 EGKLSGVVSNP 274 (371)
Q Consensus 264 ~~~fDlIvsNP 274 (371)
+|+.|+.+.|-
T Consensus 79 ~Gkld~L~NNA 89 (289)
T KOG1209|consen 79 DGKLDLLYNNA 89 (289)
T ss_pred CCceEEEEcCC
Confidence 68999999883
No 491
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=59.66 E-value=44 Score=32.06 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=29.6
Q ss_pred CCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Q 017476 195 RDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAF 238 (371)
Q Consensus 195 ~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~~ 238 (371)
.+.+||=.|+| .|..++.+|+.. +.+|++++.+++-++.+++
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~ 205 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK 205 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH
Confidence 45678887754 455566677764 5689999999887777643
No 492
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=59.57 E-value=7.3 Score=34.43 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=52.9
Q ss_pred CeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcE-EEEEcCcccccccCCCceeEEEEcCC
Q 017476 197 GFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDII-EIRQGSWFGKLKDVEGKLSGVVSNPP 275 (371)
Q Consensus 197 ~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v-~~~~gD~~~~l~~~~~~fDlIvsNPP 275 (371)
++.+-+|...=..-+...+. ..++|..||.++--+.. ...+++ .+...|+........++||.+.|-
T Consensus 3 ~~g~V~GS~~PwvEv~aL~~--GA~~iltveyn~L~i~~--------~~~dr~ssi~p~df~~~~~~y~~~fD~~as~-- 70 (177)
T PF03269_consen 3 KSGLVVGSMQPWVEVMALQH--GAAKILTVEYNKLEIQE--------EFRDRLSSILPVDFAKNWQKYAGSFDFAASF-- 70 (177)
T ss_pred ceEEEEecCCchhhHHHHHc--CCceEEEEeecccccCc--------ccccccccccHHHHHHHHHHhhccchhhhee--
Confidence 45666666644443333332 45678999887622111 011121 233334333332334689988871
Q ss_pred CCCCCCcccchhhhccc-CccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEEC
Q 017476 276 YIPSDDISGLQVEVGKH-EPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETN 330 (371)
Q Consensus 276 Yi~~~~~~~l~~ev~~~-ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~ 330 (371)
..+++ ....+| +|. |...+++. +..+...||+||.+++.++
T Consensus 71 ----~siEh--~GLGRYGDPi-------dp~Gdl~~-m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 71 ----SSIEH--FGLGRYGDPI-------DPIGDLRA-MAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred ----chhcc--ccccccCCCC-------CccccHHH-HHHHHHhhccCCeEEEEee
Confidence 11111 011111 111 22334443 4467789999999999763
No 493
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=59.56 E-value=52 Score=24.27 Aligned_cols=52 Identities=10% Similarity=0.075 Sum_probs=38.4
Q ss_pred HHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCCceEEE
Q 017476 312 CNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGIQRFVT 367 (371)
Q Consensus 312 l~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~~R~~~ 367 (371)
.+.+.+-|++|+.|.+..+.....+.+..+.++ .|+.-+.+.. ..|..++++
T Consensus 16 ~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~---~G~~~~~~~~-~~~~~~~~I 67 (69)
T cd03420 16 LKKEIDKLQDGEQLEVKASDPGFARDAQAWCKS---TGNTLISLET-EKGKVKAVI 67 (69)
T ss_pred HHHHHHcCCCCCEEEEEECCccHHHHHHHHHHH---cCCEEEEEEe-cCCEEEEEE
Confidence 456667889999999998766677888899886 6676655444 377777764
No 494
>PRK06720 hypothetical protein; Provisional
Probab=59.43 E-value=60 Score=28.41 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=49.2
Q ss_pred CCCeEEEECCcccHHHHHHHHHh-CCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccc--c-------cCC
Q 017476 195 RDGFWVDLGTGSGAIAIGIARVL-GSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKL--K-------DVE 264 (371)
Q Consensus 195 ~~~~VLDlG~GsG~~al~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l--~-------~~~ 264 (371)
+++.++-.|.+. .++..+++.+ ..+.+|+.+|.+.+.++.+.+.+...+ .++.++..|..+.- . ...
T Consensus 15 ~gk~~lVTGa~~-GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~~~~ 91 (169)
T PRK06720 15 AGKVAIVTGGGI-GIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--GEALFVSYDMEKQGDWQRVISITLNAF 91 (169)
T ss_pred CCCEEEEecCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 345677766654 4444444433 145789999999887766555554433 24677888875421 1 112
Q ss_pred CceeEEEEcCCCC
Q 017476 265 GKLSGVVSNPPYI 277 (371)
Q Consensus 265 ~~fDlIvsNPPYi 277 (371)
++.|++|.|.-+.
T Consensus 92 G~iDilVnnAG~~ 104 (169)
T PRK06720 92 SRIDMLFQNAGLY 104 (169)
T ss_pred CCCCEEEECCCcC
Confidence 6799999996543
No 495
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=59.30 E-value=51 Score=31.33 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCCCeEEEECCc-ccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH
Q 017476 194 LRDGFWVDLGTG-SGAIAIGIARVLGSKGSIIAVDLNPLAAAVAA 237 (371)
Q Consensus 194 ~~~~~VLDlG~G-sG~~al~la~~~~~~~~V~gvDis~~al~~A~ 237 (371)
..+.+||-.|+| .|..++.+|+.. +.+|++++.+++..+.++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELAR 203 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 446688888886 666777777764 568999999998877663
No 496
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=58.98 E-value=9.2 Score=36.00 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=49.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEcCcccccccCCCceeEEEEcC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQD-IIEIRQGSWFGKLKDVEGKLSGVVSNP 274 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~-~v~~~~gD~~~~l~~~~~~fDlIvsNP 274 (371)
+.+|+++-.|.|.+--++-...-|.--|-|+|+++.|-++-+.|-..+-+.. +|+-+...-++ .-++|++.+.|
T Consensus 3 pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~kefd-----~l~~~m~lMSP 77 (338)
T KOG0919|consen 3 PLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKEFD-----KLQANMLLMSP 77 (338)
T ss_pred ceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeHhhhh-----hcccceEeeCC
Confidence 4589999999998776665542255568899999988877766621111110 02211111111 13688999999
Q ss_pred CCCCCC
Q 017476 275 PYIPSD 280 (371)
Q Consensus 275 PYi~~~ 280 (371)
|+-|..
T Consensus 78 pCQPfT 83 (338)
T KOG0919|consen 78 PCQPFT 83 (338)
T ss_pred CCCchh
Confidence 987643
No 497
>PRK06484 short chain dehydrogenase; Validated
Probab=58.98 E-value=88 Score=32.12 Aligned_cols=75 Identities=17% Similarity=0.104 Sum_probs=47.4
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.|+ +|.++..+++.+. .+.+|+.++.+++.++...+.. + .++..+..|+.+.-. ...+
T Consensus 269 ~k~~lItGa-s~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 269 PRVVAITGG-ARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---G--DEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 456676665 5556666666542 3569999999987766554322 2 246678888765311 1126
Q ss_pred ceeEEEEcCCC
Q 017476 266 KLSGVVSNPPY 276 (371)
Q Consensus 266 ~fDlIvsNPPY 276 (371)
.+|++|.|.-+
T Consensus 343 ~id~li~nAg~ 353 (520)
T PRK06484 343 RLDVLVNNAGI 353 (520)
T ss_pred CCCEEEECCCC
Confidence 79999999654
No 498
>PRK07478 short chain dehydrogenase; Provisional
Probab=58.95 E-value=69 Score=29.20 Aligned_cols=79 Identities=11% Similarity=0.046 Sum_probs=52.3
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccc---------cCCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLK---------DVEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~---------~~~~ 265 (371)
++++|=.|+ +|.++..+++.+. .+.+|+.++.+++.++.+...+...+ .++.++..|+.+.-. ...+
T Consensus 6 ~k~~lItGa-s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 6 GKVAIITGA-SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 456775554 4666666665542 35789999999888777666665544 348888999865311 1125
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
++|++|.|.-+.
T Consensus 83 ~id~li~~ag~~ 94 (254)
T PRK07478 83 GLDIAFNNAGTL 94 (254)
T ss_pred CCCEEEECCCCC
Confidence 789999997653
No 499
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.81 E-value=64 Score=29.11 Aligned_cols=78 Identities=19% Similarity=0.098 Sum_probs=50.5
Q ss_pred CCeEEEECCcccHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCccccccc---------CCC
Q 017476 196 DGFWVDLGTGSGAIAIGIARVLG-SKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKD---------VEG 265 (371)
Q Consensus 196 ~~~VLDlG~GsG~~al~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~---------~~~ 265 (371)
++++|=.|+ +|.++..+++.+. .+.+|++++.++..++....++.. ..++.++.+|+.+.-.- ..+
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFG 80 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 446666654 4566666665432 356899999999776665555433 23588999998653210 124
Q ss_pred ceeEEEEcCCCC
Q 017476 266 KLSGVVSNPPYI 277 (371)
Q Consensus 266 ~fDlIvsNPPYi 277 (371)
.+|+||.|.-+.
T Consensus 81 ~~d~vi~~ag~~ 92 (251)
T PRK07231 81 SVDILVNNAGTT 92 (251)
T ss_pred CCCEEEECCCCC
Confidence 689999987653
No 500
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=58.68 E-value=34 Score=32.15 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcCcccccccCCCceeEEEEcCCCCCCCCcccchhh
Q 017476 209 IAIGIARVLGSKGSIIAVDLNPLAAAVAAFNAQRYGLQDIIEIRQGSWFGKLKDVEGKLSGVVSNPPYIPSDDISGLQVE 288 (371)
Q Consensus 209 ~al~la~~~~~~~~V~gvDis~~al~~A~~n~~~~gl~~~v~~~~gD~~~~l~~~~~~fDlIvsNPPYi~~~~~~~l~~e 288 (371)
++.++.+. ++..+|+|+|.++..++.|.+ .|+.+. ...+ .+.+ ..+|+||.-=|
T Consensus 1 ~A~aL~~~-g~~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~-~~~~----~~~DlvvlavP------------- 54 (258)
T PF02153_consen 1 IALALRKA-GPDVEVYGYDRDPETLEAALE----LGIIDE---ASTD-IEAV----EDADLVVLAVP------------- 54 (258)
T ss_dssp HHHHHHHT-TTTSEEEEE-SSHHHHHHHHH----TTSSSE---EESH-HHHG----GCCSEEEE-S--------------
T ss_pred ChHHHHhC-CCCeEEEEEeCCHHHHHHHHH----CCCeee---ccCC-HhHh----cCCCEEEEcCC-------------
Confidence 35556554 467899999999998877753 355431 1111 1222 35798775211
Q ss_pred hcccCccccccCCCCcHHHHHHHHHHHhcccccCcEEEEEECCcCcHHHHHHHHhccccCCceeEEEEecCCCC
Q 017476 289 VGKHEPRLALDGGVDGLDYLLHLCNGTASMLKPGGFFAFETNGEKQCKFLKNYLENDSACSFCNVSIVSDFAGI 362 (371)
Q Consensus 289 v~~~ep~~aL~gg~dGl~~~~~il~~a~~~LkpgG~lvle~~~~~q~~~v~~~l~~~~~~gf~~v~~~~Dl~g~ 362 (371)
...+..+++....++++|+ +++.+.+ -... +.+.+++....+..-|-.++ ++|.
T Consensus 55 ----------------~~~~~~~l~~~~~~~~~~~-iv~Dv~S-vK~~-~~~~~~~~~~~~~~~v~~HP-M~G~ 108 (258)
T PF02153_consen 55 ----------------VSAIEDVLEEIAPYLKPGA-IVTDVGS-VKAP-IVEAMERLLPEGVRFVGGHP-MAGP 108 (258)
T ss_dssp ----------------HHHHHHHHHHHHCGS-TTS-EEEE--S--CHH-HHHHHHHHHTSSGEEEEEEE-SCST
T ss_pred ----------------HHHHHHHHHHhhhhcCCCc-EEEEeCC-CCHH-HHHHHHHhcCcccceeecCC-CCCC
Confidence 3445678888888888764 5555533 3333 33333332112344455554 5554
Done!