BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017477
         (371 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1
          Length = 242

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/230 (44%), Positives = 127/230 (55%), Gaps = 50/230 (21%)

Query: 72  VTYKECLKNHAASIGGHALDGCGEFMPSPTATPSDPTSLKCAACGCHRNFHRREPDQDHH 131
           V YKECLKNHAA++GGHALDGCGEFMPSPTAT +DP+SL+CAACGCHRNFHRR+P ++ +
Sbjct: 29  VCYKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRDPSENLN 88

Query: 132 LPHVPTTATTATIEYQPHHRHHPPPPVTQPPSRRSPSSASPPPISSSYYPSAP--HMLLA 189
               P  ++ +  E               PPSR   S     P+  SYY SAP  H++L+
Sbjct: 89  FLTAPPISSPSGTE--------------SPPSRHVSS-----PVPCSYYTSAPPHHVILS 129

Query: 190 LSGNLQQSSAAAAVPQENHHISNNHHHNNNNIMMSNSGGSSGGRKRFRTKFSQSQKEKMF 249
           LS      S                   +  ++ S +      RKR RTKF+  QK KM 
Sbjct: 130 LSSGFPGPS-----------------DQDPTVVRSENSSRGAMRKRTRTKFTPEQKIKMR 172

Query: 250 EFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRDLNG 291
            FAE+ GWK+   D+  V EFCNEV        VWMHNNK +     LNG
Sbjct: 173 AFAEKAGWKINGCDEKSVREFCNEVGIERGVLKVWMHNNKYSL----LNG 218


>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana
           GN=At4g24660 PE=1 SV=1
          Length = 220

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 108/224 (48%), Gaps = 59/224 (26%)

Query: 72  VTYKECLKNHAASIGGHALDGCGEFMPSPTATPSDPTSLKCAACGCHRNFHRREPDQDHH 131
           + Y+ECLKNHA +IGGHA+DGC EFMPS      D  +LKCAACGCHRNFHR+E      
Sbjct: 47  IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLD--ALKCAACGCHRNFHRKE------ 98

Query: 132 LPHVPTTATTATIEYQPHHRHHPPPPVTQPPSRRSPSSASPPPISSSYYPSAPHMLLALS 191
                T +        P + + PP P  QPP                             
Sbjct: 99  -----TESIGGRAHRVPTYYNRPPQP-HQPP----------------------------- 123

Query: 192 GNLQQSSAAAAVPQENHHISNNHHHNNNNIMMSNSGGSSGGRKRFRTKFSQSQKEKMFEF 251
           G L  +S AA               + +    SN   S G  KRFRTKF+  QKEKM  F
Sbjct: 124 GYLHLTSPAAP--------YRPPAASGDEEDTSNPSSSGGTTKRFRTKFTAEQKEKMLAF 175

Query: 252 AERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287
           AER+GW++QK DD  V +FC E         +WMHNNK++  K+
Sbjct: 176 AERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSLGKK 219


>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana
           GN=At5g65410 PE=1 SV=1
          Length = 279

 Score =  133 bits (334), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 108/222 (48%), Gaps = 53/222 (23%)

Query: 74  YKECLKNHAASIGGHALDGCGEFMPSPTATPSDPTSLKCAACGCHRNFHRREPDQDHHLP 133
           ++ECLKN A +IGGHA+DGCGEFMP+      D  +LKCAACGCHRNFHR+E      LP
Sbjct: 75  FRECLKNQAVNIGGHAVDGCGEFMPAGIEGTID--ALKCAACGCHRNFHRKE------LP 126

Query: 134 HVPTTATTATIEYQPHHRHHPPPPVTQPPSRRSPSSASPPPISSSYYPSAPHMLLALSGN 193
           +             P   +  P PV          S  PPP                S  
Sbjct: 127 YFHHAPPQHQPPPPPPGFYRLPAPV----------SYRPPP----------------SQA 160

Query: 194 LQQSSAAAAVPQENHHISNNHHHNNNNIMMSNSGGSSGG-RKRFRTKFSQSQKEKMFEFA 252
                A     +E           + + M ++S  + GG RKR RTKF+  QKE+M   A
Sbjct: 161 PPLQLALPPPQRER----------SEDPMETSSAEAGGGIRKRHRTKFTAEQKERMLALA 210

Query: 253 ERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAK 286
           ER+GW++Q++DD+++  FC E         VW+HNNK T  K
Sbjct: 211 ERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHTLGK 252


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.126    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,382,465
Number of Sequences: 539616
Number of extensions: 8081213
Number of successful extensions: 157323
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 793
Number of HSP's that attempted gapping in prelim test: 63727
Number of HSP's gapped (non-prelim): 56890
length of query: 371
length of database: 191,569,459
effective HSP length: 119
effective length of query: 252
effective length of database: 127,355,155
effective search space: 32093499060
effective search space used: 32093499060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)