Query 017477
Match_columns 371
No_of_seqs 148 out of 241
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:04:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh7_A ZF-HD homeobox family p 99.5 1.8E-14 6.1E-19 114.1 6.4 58 229-286 13-78 (80)
2 1wh5_A ZF-HD homeobox family p 99.3 1.1E-12 3.8E-17 103.4 5.9 57 230-286 14-78 (80)
3 2da4_A Hypothetical protein DK 98.2 2.2E-07 7.5E-12 72.1 -0.3 58 230-287 5-70 (80)
4 2dmq_A LIM/homeobox protein LH 98.2 4.6E-07 1.6E-11 70.0 1.4 56 230-289 4-67 (80)
5 2da3_A Alpha-fetoprotein enhan 98.0 1.8E-06 6E-11 66.4 2.4 56 229-288 13-76 (80)
6 1wi3_A DNA-binding protein SAT 97.3 0.00014 4.8E-09 57.5 3.8 51 229-282 3-61 (71)
7 2dms_A Homeobox protein OTX2; 97.3 0.00019 6.5E-09 55.5 4.2 57 231-291 5-69 (80)
8 2dmu_A Homeobox protein goosec 96.6 0.00074 2.5E-08 50.8 2.0 54 231-288 5-66 (70)
9 2dmt_A Homeobox protein BARH-l 96.6 0.0018 6.2E-08 50.0 4.0 55 230-288 14-76 (80)
10 2da2_A Alpha-fetoprotein enhan 96.5 0.0014 4.8E-08 49.1 3.1 55 230-288 4-66 (70)
11 2cra_A Homeobox protein HOX-B1 96.5 0.0021 7.3E-08 48.3 4.1 55 230-288 4-66 (70)
12 2djn_A Homeobox protein DLX-5; 96.5 0.0015 5.2E-08 49.2 3.1 55 230-288 4-66 (70)
13 2kt0_A Nanog, homeobox protein 96.3 0.006 2E-07 47.2 5.7 55 230-288 19-81 (84)
14 2e1o_A Homeobox protein PRH; D 96.3 0.0038 1.3E-07 47.0 4.1 54 230-287 4-65 (70)
15 2cue_A Paired box protein PAX6 96.1 0.003 1E-07 48.7 3.1 53 231-287 5-65 (80)
16 2da1_A Alpha-fetoprotein enhan 96.0 0.0021 7E-08 48.2 1.5 54 231-288 5-66 (70)
17 2cuf_A FLJ21616 protein; homeo 95.9 0.0026 8.8E-08 50.7 1.7 58 230-291 4-84 (95)
18 3rkq_A Homeobox protein NKX-2. 95.9 0.0042 1.4E-07 44.4 2.6 46 232-281 1-54 (58)
19 2dn0_A Zinc fingers and homeob 95.8 0.0074 2.5E-07 46.1 4.0 53 233-289 8-68 (76)
20 2dmn_A Homeobox protein TGIF2L 95.8 0.0055 1.9E-07 47.9 3.1 57 230-287 4-68 (83)
21 2m0c_A Homeobox protein arista 95.8 0.0052 1.8E-07 46.3 2.8 55 231-289 7-69 (75)
22 1bw5_A ISL-1HD, insulin gene e 95.8 0.0045 1.6E-07 45.9 2.4 53 232-288 2-62 (66)
23 1nk2_P Homeobox protein VND; h 95.5 0.013 4.4E-07 44.9 4.3 53 230-286 6-66 (77)
24 3nar_A ZHX1, zinc fingers and 95.3 0.0047 1.6E-07 49.4 1.2 56 229-288 21-84 (96)
25 3a01_A Homeodomain-containing 95.3 0.017 5.8E-07 46.0 4.4 56 229-288 13-76 (93)
26 1akh_A Protein (mating-type pr 95.1 0.0087 3E-07 43.5 2.1 45 232-280 4-56 (61)
27 1b8i_A Ultrabithorax, protein 95.1 0.0052 1.8E-07 47.7 0.8 53 231-287 18-78 (81)
28 1fjl_A Paired protein; DNA-bin 95.1 0.014 4.7E-07 45.0 3.2 51 231-285 16-74 (81)
29 2vi6_A Homeobox protein nanog; 95.0 0.0083 2.8E-07 44.0 1.7 52 232-287 2-61 (62)
30 1e3o_C Octamer-binding transcr 95.0 0.0068 2.3E-07 52.7 1.4 53 231-287 99-159 (160)
31 1ahd_P Antennapedia protein mu 95.0 0.0095 3.2E-07 44.7 2.0 53 232-288 1-61 (68)
32 2hdd_A Protein (engrailed home 95.0 0.0057 1.9E-07 44.7 0.7 47 232-282 2-56 (61)
33 1yz8_P Pituitary homeobox 2; D 95.0 0.0048 1.6E-07 46.2 0.3 53 232-288 2-62 (68)
34 2h1k_A IPF-1, pancreatic and d 94.9 0.014 4.9E-07 42.9 2.8 49 232-284 2-58 (63)
35 3d1n_I POU domain, class 6, tr 94.8 0.011 3.8E-07 50.7 2.2 52 230-285 90-149 (151)
36 1ig7_A Homeotic protein MSX-1; 94.8 0.019 6.6E-07 41.3 3.1 44 234-281 1-52 (58)
37 1zq3_P PRD-4, homeotic bicoid 94.7 0.014 4.8E-07 43.7 2.1 50 233-286 2-59 (68)
38 1jgg_A Segmentation protein EV 94.6 0.02 7E-07 41.6 2.8 45 234-282 2-54 (60)
39 1x2n_A Homeobox protein pknox1 94.4 0.038 1.3E-06 41.6 4.1 56 231-287 5-68 (73)
40 2l7z_A Homeobox protein HOX-A1 94.4 0.026 8.9E-07 42.8 3.1 52 232-287 6-65 (73)
41 1du6_A PBX1, homeobox protein 94.3 0.031 1E-06 41.1 3.2 54 232-286 2-63 (64)
42 1puf_A HOX-1.7, homeobox prote 94.1 0.047 1.6E-06 41.7 4.1 48 231-282 11-66 (77)
43 2k40_A Homeobox expressed in E 94.1 0.012 4E-07 43.8 0.7 51 234-288 2-60 (67)
44 1ftt_A TTF-1 HD, thyroid trans 94.1 0.029 9.9E-07 41.9 2.8 52 232-287 1-60 (68)
45 2r5y_A Homeotic protein sex co 94.1 0.011 3.9E-07 46.2 0.5 52 231-286 26-85 (88)
46 2d5v_A Hepatocyte nuclear fact 94.0 0.02 6.8E-07 49.5 2.0 54 231-288 95-156 (164)
47 1au7_A Protein PIT-1, GHF-1; c 93.7 0.025 8.4E-07 48.6 2.0 54 230-287 84-145 (146)
48 2xsd_C POU domain, class 3, tr 93.6 0.019 6.5E-07 50.4 1.1 55 230-288 96-158 (164)
49 2da5_A Zinc fingers and homeob 93.5 0.059 2E-06 41.1 3.7 52 234-289 8-67 (75)
50 2ly9_A Zinc fingers and homeob 93.5 0.051 1.8E-06 40.9 3.2 52 233-288 6-65 (74)
51 1b72_B Protein (PBX1); homeodo 93.4 0.046 1.6E-06 42.4 3.0 55 233-288 1-63 (87)
52 1b72_A Protein (homeobox prote 93.2 0.03 1E-06 44.7 1.7 53 231-287 32-92 (97)
53 1puf_B PRE-B-cell leukemia tra 92.3 0.094 3.2E-06 39.4 3.3 55 233-288 1-63 (73)
54 2ecc_A Homeobox and leucine zi 92.2 0.084 2.9E-06 41.6 3.0 53 235-291 5-65 (76)
55 1mnm_C Protein (MAT alpha-2 tr 92.1 0.11 3.7E-06 40.5 3.4 49 232-281 26-82 (87)
56 3l1p_A POU domain, class 5, tr 90.9 0.034 1.1E-06 48.1 -0.7 50 231-284 94-151 (155)
57 2da6_A Hepatocyte nuclear fact 89.9 0.09 3.1E-06 43.7 1.1 58 230-288 3-86 (102)
58 2dmp_A Zinc fingers and homeob 89.5 0.43 1.5E-05 37.6 4.7 47 238-288 18-72 (89)
59 3a02_A Homeobox protein arista 89.4 0.094 3.2E-06 38.0 0.7 46 237-286 3-56 (60)
60 1le8_B Mating-type protein alp 86.8 0.42 1.4E-05 37.0 3.0 54 233-287 2-63 (83)
61 1lfb_A Liver transcription fac 86.3 0.24 8.1E-06 40.4 1.4 54 231-288 7-89 (99)
62 2h8r_A Hepatocyte nuclear fact 86.3 0.2 7E-06 46.6 1.1 42 230-272 139-180 (221)
63 2hi3_A Homeodomain-only protei 85.4 0.23 7.7E-06 37.5 0.8 52 234-288 3-62 (73)
64 1k61_A Mating-type protein alp 84.8 0.61 2.1E-05 33.5 2.9 44 237-281 2-53 (60)
65 1ic8_A Hepatocyte nuclear fact 83.9 0.5 1.7E-05 42.8 2.5 41 231-272 113-153 (194)
66 1uhs_A HOP, homeodomain only p 83.4 0.32 1.1E-05 36.4 0.9 52 234-288 2-61 (72)
67 2ecb_A Zinc fingers and homeob 80.4 1.9 6.6E-05 34.5 4.5 50 234-288 13-70 (89)
68 2cki_A Ulilysin; metalloprotea 73.6 1.7 5.6E-05 40.9 2.6 21 236-258 237-257 (262)
69 3a03_A T-cell leukemia homeobo 63.3 4 0.00014 29.0 2.3 41 238-282 2-50 (56)
70 2lci_A Protein OR36; structura 62.8 4.3 0.00015 34.3 2.7 29 246-274 65-97 (134)
71 2ba3_A NIKA; dimer, bacterial 60.3 6 0.00021 27.7 2.7 28 232-259 14-41 (51)
72 2elh_A CG11849-PA, LD40883P; s 54.7 11 0.00038 28.7 3.6 24 233-257 16-39 (87)
73 1hlv_A CENP-B, major centromer 49.1 12 0.00041 29.7 3.1 23 236-258 4-26 (131)
74 1ity_A TRF1; helix-turn-helix, 46.8 20 0.00069 26.5 3.8 25 232-256 5-29 (69)
75 1x41_A Transcriptional adaptor 46.2 16 0.00053 26.5 3.1 23 234-256 5-27 (60)
76 2hzq_A Apolipoprotein D, APO-D 45.8 16 0.00054 30.6 3.5 26 236-261 128-154 (174)
77 2if6_A Hypothetical protein YI 45.5 4.1 0.00014 35.4 -0.2 40 234-276 73-117 (186)
78 1uxc_A FRUR (1-57), fructose r 43.6 17 0.00059 26.9 3.0 25 239-263 29-53 (65)
79 1gka_B Crustacyanin A2 subunit 43.6 14 0.00047 30.6 2.8 24 237-260 135-159 (174)
80 2l8n_A Transcriptional repress 43.0 19 0.00066 26.8 3.2 22 239-260 35-56 (67)
81 2dim_A Cell division cycle 5-l 42.8 19 0.00064 26.7 3.1 22 235-256 7-28 (70)
82 3o22_A Prostaglandin-H2 D-isom 42.1 18 0.00061 29.7 3.2 22 239-260 126-147 (162)
83 2glo_A Brinker CG9653-PA; prot 41.1 17 0.00059 25.6 2.6 16 237-252 3-18 (59)
84 1iuf_A Centromere ABP1 protein 40.2 9.6 0.00033 31.8 1.3 20 234-253 6-25 (144)
85 1dj7_A Ferredoxin thioredoxin 40.1 23 0.00077 30.2 3.5 24 241-264 7-34 (117)
86 1dzk_A PIG OBP, odorant-bindin 38.9 21 0.00073 28.9 3.2 25 237-261 120-145 (157)
87 3cbc_A Neutrophil gelatinase-a 37.7 22 0.00076 30.1 3.2 24 237-260 160-184 (198)
88 3sjm_A Telomeric repeat-bindin 37.1 26 0.00087 26.1 3.1 23 234-256 8-30 (64)
89 1bj7_A D 2; allergen, lipocali 37.0 25 0.00084 28.7 3.3 22 240-261 123-144 (156)
90 3k2a_A Homeobox protein MEIS2; 36.8 9.5 0.00032 28.3 0.6 49 239-288 4-60 (67)
91 1rfh_A RAS association (ralgds 35.9 9.9 0.00034 27.8 0.6 23 90-120 25-49 (59)
92 1i4u_A Crustacyanin; lipocalin 35.7 25 0.00085 29.9 3.2 24 237-260 138-162 (181)
93 2k9i_A Plasmid PRN1, complete 35.7 17 0.00058 25.0 1.8 29 232-260 8-36 (55)
94 2elk_A SPCC24B10.08C protein; 35.4 21 0.00071 25.8 2.3 21 236-256 8-28 (58)
95 1nee_A EIF-2-beta, probable tr 35.2 10 0.00035 32.8 0.7 14 108-121 122-135 (138)
96 1qwd_A Outer membrane lipoprot 34.9 26 0.00088 30.1 3.2 22 240-261 147-168 (177)
97 2fnf_X Putative RAS effector N 34.8 16 0.00056 27.8 1.7 28 90-125 38-67 (72)
98 3ebw_A PER A 4 allergen; beta 34.5 21 0.00071 30.1 2.5 22 240-261 130-151 (163)
99 1k81_A EIF-2-beta, probable tr 33.0 9.4 0.00032 25.9 0.1 13 108-120 20-32 (36)
100 2wwx_B DRRA, SIDM; golgi appar 31.8 7.8 0.00027 34.8 -0.6 19 266-284 154-178 (217)
101 3cw2_K Translation initiation 31.7 11 0.00037 32.7 0.2 13 108-120 123-135 (139)
102 2d9a_A B-MYB, MYB-related prot 30.7 52 0.0018 23.4 3.8 23 234-256 5-27 (60)
103 1e5p_A Aphrodisin; lipocalin, 30.6 35 0.0012 27.5 3.2 25 237-261 114-139 (151)
104 1iyr_A DFF45, DNA fragmentatio 30.4 12 0.0004 31.7 0.2 43 245-289 45-95 (111)
105 3gj5_B Nuclear pore complex pr 30.1 18 0.0006 24.6 1.0 10 107-116 19-28 (34)
106 2d74_B Translation initiation 29.8 14 0.00049 32.3 0.7 13 108-120 124-136 (148)
107 2jn6_A Protein CGL2762, transp 29.7 23 0.00079 26.9 1.8 30 237-274 3-33 (97)
108 2l5p_A Lipocalin 12; beta barr 29.5 37 0.0012 28.7 3.2 21 239-259 138-158 (184)
109 2ofy_A Putative XRE-family tra 29.3 22 0.00075 25.9 1.6 35 237-274 3-37 (86)
110 2g2k_A EIF-5, eukaryotic trans 29.1 14 0.00049 33.1 0.6 15 108-122 118-132 (170)
111 3s26_A Neutrophil gelatinase-a 29.0 37 0.0013 29.0 3.2 22 240-261 146-167 (190)
112 2xst_A Lipocalin 15; transport 28.9 26 0.00088 28.1 2.1 22 239-260 128-149 (161)
113 2cpg_A REPA protein, transcrip 28.9 12 0.00042 24.9 0.1 25 233-257 2-26 (45)
114 2cqx_A LAG1 longevity assuranc 28.9 9.8 0.00034 28.7 -0.4 48 235-286 10-66 (72)
115 1epa_A Epididymal retinoic aci 28.8 40 0.0014 27.3 3.2 20 240-259 123-142 (164)
116 1ew3_A Allergen EQU C 1; lipoc 28.5 40 0.0014 27.2 3.2 22 239-260 122-143 (159)
117 1lf7_A Complement protein C8ga 28.2 40 0.0014 28.4 3.2 22 239-260 136-157 (182)
118 2e9h_A EIF-5, eukaryotic trans 28.0 14 0.00049 32.7 0.4 15 108-122 125-139 (157)
119 3bx8_A Engineered human lipoca 27.7 42 0.0014 27.9 3.2 21 239-259 143-163 (178)
120 1guu_A C-MYB, MYB proto-oncoge 27.4 48 0.0016 22.9 3.0 21 237-257 3-23 (52)
121 3o39_A Periplasmic protein rel 26.9 34 0.0012 28.2 2.5 17 238-254 89-105 (108)
122 3gj3_B Nuclear pore complex pr 26.8 21 0.00073 24.0 1.0 10 107-116 19-28 (33)
123 2a2u_A Protein (alpha-2U-globu 26.4 38 0.0013 28.0 2.7 25 237-261 141-166 (181)
124 2ra6_A Trichosurin; lipocalin, 26.4 38 0.0013 27.8 2.7 23 239-261 134-156 (166)
125 3kff_A MUP 4, major urinary pr 26.1 46 0.0016 27.4 3.2 23 239-261 125-147 (162)
126 1jx6_A LUXP protein; protein-l 25.4 32 0.0011 30.6 2.2 21 240-260 14-34 (342)
127 2din_A Cell division cycle 5-l 24.5 50 0.0017 24.0 2.8 21 236-256 8-28 (66)
128 3l0i_A DRRA, SIDM; GEF-GDF-RAB 24.4 13 0.00044 35.4 -0.6 20 266-285 283-308 (363)
129 3qkg_A Protein AMBP; beta barr 24.3 56 0.0019 28.1 3.5 22 239-260 137-158 (193)
130 2ebv_A Nuclear pore complex pr 24.3 37 0.0013 25.5 2.0 21 92-117 33-53 (57)
131 1beb_A Beta-lactoglobulin; lip 24.1 29 0.00099 28.3 1.5 24 239-262 127-150 (162)
132 3sao_A Extracellular fatty aci 23.7 41 0.0014 27.7 2.4 21 239-259 119-139 (160)
133 1z24_A Insecticyanin A form; b 23.6 40 0.0014 28.6 2.4 22 240-261 141-164 (189)
134 2enz_A NPKC-theta, protein kin 23.3 41 0.0014 24.6 2.1 31 90-125 26-58 (65)
135 2yus_A SWI/SNF-related matrix- 23.2 1.5E+02 0.0051 22.9 5.4 23 234-256 15-37 (79)
136 3bvp_A INT, TP901-1 integrase; 23.1 41 0.0014 27.3 2.2 19 242-260 24-42 (138)
137 1yoz_A Hypothetical protein AF 23.0 48 0.0016 28.0 2.6 30 242-271 76-106 (116)
138 2ket_A Cathelicidin-6; antimic 22.9 5.8 0.0002 25.7 -2.2 9 234-242 4-12 (27)
139 1faq_A RAF-1; transferase, ser 22.3 40 0.0014 23.3 1.7 26 90-124 17-44 (52)
140 1fex_A TRF2-interacting telome 22.2 60 0.002 23.9 2.8 19 237-255 2-20 (59)
141 3guv_A Site-specific recombina 22.1 43 0.0015 27.9 2.2 19 242-260 25-43 (167)
142 3n6o_A Guanine nucleotide exch 21.9 15 0.00053 35.0 -0.6 19 266-284 134-158 (311)
143 2ao9_A Phage protein; structur 21.6 33 0.0011 30.1 1.4 22 233-254 17-38 (155)
144 2e19_A Transcription factor 8; 21.5 45 0.0015 24.5 2.0 41 238-282 8-56 (64)
145 3i38_A Putative chaperone DNAJ 21.5 64 0.0022 26.1 3.1 23 236-258 78-101 (109)
146 3fiq_A OBP1, RCG36470, odorant 21.0 61 0.0021 26.9 3.0 20 239-258 123-142 (157)
147 1w0t_A Telomeric repeat bindin 20.8 76 0.0026 22.1 3.0 20 237-256 2-21 (53)
148 3l4r_A Allergen DOG 2, minor a 20.7 42 0.0014 28.2 1.9 22 239-260 125-146 (170)
149 2rn7_A IS629 ORFA; helix, all 20.6 55 0.0019 25.2 2.4 37 237-274 4-40 (108)
150 1xki_A VON ebner'S gland prote 20.2 44 0.0015 27.4 1.9 22 239-260 117-138 (162)
151 2hlv_A Odorant-binding protein 20.2 72 0.0025 25.9 3.2 22 239-260 124-145 (160)
152 2aje_A Telomere repeat-binding 20.1 81 0.0028 26.0 3.4 26 231-256 7-32 (105)
153 1exs_A Beta-lactoglobulin; lip 20.1 46 0.0016 27.1 2.0 23 237-259 124-147 (160)
No 1
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.51 E-value=1.8e-14 Score=114.12 Aligned_cols=58 Identities=59% Similarity=1.041 Sum_probs=54.2
Q ss_pred CCCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCC
Q 017477 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAK 286 (371)
Q Consensus 229 ~s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~K 286 (371)
....+||.||+||.+|++.|.+|++++||+.++.|..+.+++|.+| |||+|++..+++
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 4456899999999999999999999999999999999999999999 999999987765
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.33 E-value=1.1e-12 Score=103.39 Aligned_cols=57 Identities=51% Similarity=1.029 Sum_probs=53.3
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAK 286 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~K 286 (371)
...+||.||+||.+|++.|..+.+++|||.++.|..+.+++|.+| |||+|++..+++
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 456899999999999999999999999999999999999999999 999999987654
No 3
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.2e-07 Score=72.09 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=52.3
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
...+||.||.||.+|++.|..+-++-+|..+..+..+.++++.++ ||+.|......|.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 456799999999999999999999999999999999999999999 9999998766554
No 4
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=4.6e-07 Score=70.01 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=47.1
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRDL 289 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~~ 289 (371)
...+||.||.||.+|++.|..+-++ -+..+..+++++|.++ ||+.|.....+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAI----NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 3457999999999999999877654 4678999999999999 999999987777643
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=98.03 E-value=1.8e-06 Score=66.43 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=46.3
Q ss_pred CCCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 229 ~s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
....+||.||.||.||++.|..+-++ -+..+..+++++|.++ ||+.|.....+|+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLL----DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 34568999999999999998666554 4788999999999998 99999988776654
No 6
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.34 E-value=0.00014 Score=57.51 Aligned_cols=51 Identities=24% Similarity=0.362 Sum_probs=44.6
Q ss_pred CCCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCc
Q 017477 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKS 282 (371)
Q Consensus 229 ~s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKh 282 (371)
+...+||.||.||.||-..|..|=+.|+= +-|++++++...++ ||+-|-.-
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~---yPd~~~r~~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGL---YPDQEAIHTLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCS---CCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHhCCCHHHHHHhhcccee
Confidence 34568999999999999999999999874 67999999999998 99988654
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.31 E-value=0.00019 Score=55.47 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=43.9
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRDLNG 291 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~~~~ 291 (371)
..+||.||.||.+|.+.|..+=++ -+.-+..+.++.+.++ ||+-|-.....|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAK----TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 457999999999999988776655 3456777777777777 99999888777665433
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.00074 Score=50.76 Aligned_cols=54 Identities=20% Similarity=0.412 Sum_probs=41.4
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
..+||.||.||.+|.+.|..+=++ -+.-+..+.++.+.++ ||+-|-.....|+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQE----TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 457999999999999988776665 4556777777777777 99999876655543
No 9
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.0018 Score=50.01 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=40.8
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
...+||.||.||.+|.+.|..+=++ -+..+..+..+.+.++ ||+-|-....+|..
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEK----QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3457899999999999988766554 3456666777776666 99999877666554
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=96.55 E-value=0.0014 Score=49.15 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=42.5
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
...+||.||.||.+|.+.|..+=++ -+..+..+.++.+.++ ||+-|-....+|+.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDA----NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 3467999999999999988776655 3567777788887777 99999877665554
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.53 E-value=0.0021 Score=48.34 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=42.6
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
...+||.||.||.+|.+.|..+=++ -+..+..+..+.+.++ ||+-|-....+|..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAA----NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 3457999999999999988766654 3567777777777777 99999887666654
No 12
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.50 E-value=0.0015 Score=49.16 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=42.1
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
...+||.||.||.+|.+.|..+=++ -+.-+..+.++.+.++ ||+-|-....+|..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQK----TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcC----CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 3457999999999999988765543 4566777788887777 99999887766654
No 13
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=96.34 E-value=0.006 Score=47.19 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=41.3
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
...+||.||.||.+|.+.|..+-++ -+.-+..+..+.+.++ ||+-|-....+|+.
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQR----QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHH----SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567999999999999988665553 3456666666766666 99999887766654
No 14
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.28 E-value=0.0038 Score=46.97 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=40.4
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
...+||-||.||.+|.+.|..+=++ -+..+..+.++.+.++ ||+-|-....+|.
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFET----QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 3457889999999999988776654 3556777777777777 9999876554443
No 15
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.15 E-value=0.003 Score=48.73 Aligned_cols=53 Identities=25% Similarity=0.377 Sum_probs=39.6
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
..+||.||.||.+|.+.|..+-++ -+..+..+..+.+.++ ||+-|-....+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFER----THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 457999999999999888665442 3456677777777776 9999987665554
No 16
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=96.02 E-value=0.0021 Score=48.21 Aligned_cols=54 Identities=15% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
..+||-||.||.+|.+.|..+=++- +.-+..+.++.+.++ ||+-|-.....|+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDIN----NSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHC----SSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4579999999999999887666542 445556666666666 99999876555543
No 17
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=95.89 E-value=0.0026 Score=50.73 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=38.2
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHH---HHHHHhc-----------------c--c-eeeecCCcCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDD---LVHEFCN-----------------E--V-VWMHNNKSTFAK 286 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~---~VqqFC~-----------------E--I-VWMHNNKhtl~K 286 (371)
...+||.||+||.+|.+.|..+=++ -+.-+.. ++.+-|. + | ||+-|-....+|
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~----~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNE----NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 3457999999999999998777666 2334433 3333333 1 2 999998877666
Q ss_pred CCCCC
Q 017477 287 RDLNG 291 (371)
Q Consensus 287 k~~~~ 291 (371)
+....
T Consensus 80 ~~~~~ 84 (95)
T 2cuf_A 80 RANIA 84 (95)
T ss_dssp HHHCC
T ss_pred Hhhcc
Confidence 65433
No 18
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=95.87 E-value=0.0042 Score=44.37 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=34.3
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNK 281 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNK 281 (371)
++||.||.||.+|.+.+..+-+ +-+..+..+..+.+.++ ||+.|..
T Consensus 1 g~rr~Rt~~t~~q~~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR 54 (58)
T 3rkq_A 1 GRRKPRVLFSQAQVYELERRFK----QQRYLSAPERDQLASVLKLTSTQVKIWFQNRR 54 (58)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCCCCCCcCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhh
Confidence 4789999999999998877644 22446666777777666 9998754
No 19
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.83 E-value=0.0074 Score=46.13 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=39.6
Q ss_pred CCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCCC
Q 017477 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRDL 289 (371)
Q Consensus 233 KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~~ 289 (371)
.++.||+||.+|.+.|..+=++ -+..+..+.++.+.++ ||+-|-....+|+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR----NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH----SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCccCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 4667999999999988766554 3456666777777766 999998877666543
No 20
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=95.78 E-value=0.0055 Score=47.95 Aligned_cols=57 Identities=5% Similarity=0.122 Sum_probs=42.8
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
...+||-||.||.+|++.|.++-+. -+.=..-++++-++.+.++ ||+-|-....+|+
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~-~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYK-HRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHH-TTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 3467999999999999999876543 2233557778888888777 9999987665544
No 21
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=95.77 E-value=0.0052 Score=46.26 Aligned_cols=55 Identities=24% Similarity=0.431 Sum_probs=42.2
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRDL 289 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~~ 289 (371)
..+||-||.||.+|.+.|..+-++- +..+..+..+.+.++ ||+-|......|+.-
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKT----HYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4578999999999999988766543 346667777777776 999998877666643
No 22
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=95.76 E-value=0.0045 Score=45.92 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=41.2
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
.+||-||.||.+|.+.+..+=++ -+..+..+.++.+.++ ||+-|-....+|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA----NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 46999999999999988776665 3567777777777777 99999877665553
No 23
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=95.54 E-value=0.013 Score=44.90 Aligned_cols=53 Identities=9% Similarity=0.233 Sum_probs=39.2
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAK 286 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~K 286 (371)
...+||-||.||.+|.+.|..+=++ -+.-+..+..+.+.++ ||+-|-....+|
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr 66 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQ----QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhh
Confidence 3457889999999999988766554 3456667777777776 999987655444
No 24
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=95.31 E-value=0.0047 Score=49.37 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=37.9
Q ss_pred CCCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 229 ~s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
+....+|.||+||.+|.+.+..+=++ -+..+..+..+.+.++ ||+-|.....+|..
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVR----TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 34456889999999999998776553 3456667777777666 99999887666543
No 25
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=95.29 E-value=0.017 Score=46.04 Aligned_cols=56 Identities=14% Similarity=0.286 Sum_probs=42.3
Q ss_pred CCCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 229 SSGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 229 ~s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
....+||-||.||.+|.+.+..+=++- +.-+..+..+.+.++ ||+-|-....+|+.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQ----KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHC----SCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcC----CCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 345679999999999999887666553 557777777777777 99999876655543
No 26
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=95.13 E-value=0.0087 Score=43.52 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=29.5
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNN 280 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNN 280 (371)
.+||-||.||.+|.+.|..+-++- +..+..+.++.+.++ ||+-|-
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~----~yp~~~~r~~La~~~~l~~~qV~~WFqNr 56 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRK----QSLNSKEKEEVAKKCGITPLQVRVWFINK 56 (61)
T ss_dssp --------CCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC----CCcCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 468999999999999987776654 567778888888777 998774
No 27
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=95.10 E-value=0.0052 Score=47.71 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=34.4
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
..+||.||.||.+|.+.|..+=++ -+.-+..+..+.+.++ ||+-|-....+|.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHT----NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcccCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 357999999999999988766554 3456666777776666 9999876654443
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=95.07 E-value=0.014 Score=45.03 Aligned_cols=51 Identities=29% Similarity=0.400 Sum_probs=37.1
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFA 285 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~ 285 (371)
..+||.||.||.+|.+.|..+=++ -+.-+..+..+.+.++ ||+-|-....+
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~r 74 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFER----TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLR 74 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhh
Confidence 457899999999999988766554 3456667777777666 99988665433
No 29
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=95.01 E-value=0.0083 Score=43.97 Aligned_cols=52 Identities=17% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
.+||-||.||.+|.+.|..+=++ -+..+..+..+.+.++ ||+-|-....+|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQK----QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 46899999999999888665543 2345556666666555 9998876655443
No 30
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=95.01 E-value=0.0068 Score=52.68 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=36.3
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
..+||.||.||.+|++.|..+-++ -++-+..+..+.+.++ ||+-|.....+|+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFME----NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 467999999999999988766555 3456666777776666 9999987655553
No 31
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=94.98 E-value=0.0095 Score=44.70 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=37.7
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
.+||.||.||.+|.+.|..+=++- +..+..+..+.+.++ ||+-|-.....|+.
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~----~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 1 MRKRGRQTYTRYQTLELEKEFHFN----RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CCSCTTCCCCHHHHHHHHHHHHHC----SSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCcCHHHHHHHHHHHccC----CCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 379999999999999887665543 345555555555555 99999876655544
No 32
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=94.97 E-value=0.0057 Score=44.73 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=30.2
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCc
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKS 282 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKh 282 (371)
.+||.||.||.+|.+.|..+=++ -+.-+..+..+.+.++ ||+-|-..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 56 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE----NRYLTERRRQQLSSELGLNEAQIKIWFKNKRA 56 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcc
Confidence 36999999999999888665553 2455666666666665 89887654
No 33
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=94.95 E-value=0.0048 Score=46.15 Aligned_cols=53 Identities=25% Similarity=0.401 Sum_probs=34.6
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
.+||.||.||.+|.+.|..+=++ -+..+..+..+.+.++ ||+-|-.....|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR----NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT----CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 47999999999999988665443 2233333444444444 99988766554443
No 34
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=94.95 E-value=0.014 Score=42.93 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=32.9
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTF 284 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl 284 (371)
++||-||.||.+|.+.|..+=++ -+..+..+..+.+.++ ||+-|-....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 58 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLF----NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKW 58 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhh
Confidence 46899999999999888665553 2445666666666666 8988765433
No 35
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=94.81 E-value=0.011 Score=50.69 Aligned_cols=52 Identities=21% Similarity=0.435 Sum_probs=38.8
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFA 285 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~ 285 (371)
...+||.||.||.+|++.+..+=++ -++-+..+..+.+.++ ||+-|.....+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~K 149 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEK----NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLK 149 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccC
Confidence 3467889999999999988766655 3456677777777766 99988765443
No 36
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=94.80 E-value=0.019 Score=41.27 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=33.6
Q ss_pred CccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCC
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNK 281 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNK 281 (371)
||.||.||.+|.+.|..+=++ -+.-+..+..+.+.++ ||+-|-.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR 52 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ----KQYLSIAERAEFSSSLSLTETQVKIWFQNRR 52 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhh
Confidence 688999999999988766554 3456777777777777 8987754
No 37
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=94.65 E-value=0.014 Score=43.68 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=35.4
Q ss_pred CCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCC
Q 017477 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAK 286 (371)
Q Consensus 233 KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~K 286 (371)
+||.||.||.+|.+.|..+-++ -+..+..+..+.+.++ ||+-|-....+|
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk 59 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ----GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 59 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHH
Confidence 5899999999999888655433 3455666666666666 999887654433
No 38
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=94.55 E-value=0.02 Score=41.59 Aligned_cols=45 Identities=20% Similarity=0.371 Sum_probs=32.3
Q ss_pred CccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCc
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKS 282 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKh 282 (371)
||.||.||.+|.+.+..+=++ -+.-+..+..+.+.++ ||+-|-..
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 54 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK----ENYVSRPRRCELAAQLNLPESTIKVWFQNRRM 54 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH----CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHh
Confidence 789999999999888765554 2455666666666666 89887543
No 39
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=94.43 E-value=0.038 Score=41.64 Aligned_cols=56 Identities=11% Similarity=0.139 Sum_probs=40.6
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
..+||.||.||.+|.+.|..+-++- +.-..-+.++.++.+.++ ||+-|-....+|+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~-~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQH-IGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHT-TTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 4578999999999999987765541 233456777778887777 9998876544443
No 40
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=94.36 E-value=0.026 Score=42.83 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=39.1
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
.+||.||.||.+|.+.|..+=++ -+..+..+..+.+.++ ||+-|-....+|.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYAT----NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHH----TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhh----CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 46899999999999988766555 3456677777777666 9999987655554
No 41
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=94.28 E-value=0.031 Score=41.05 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=39.8
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAK 286 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~K 286 (371)
..||-||.||.+|.+.|..+-.. ...-+.-+.++.++.+.++ ||+-|-.....|
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYS-HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHH-cccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35889999999999998876521 1234567778888888877 999887765544
No 42
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=94.14 E-value=0.047 Score=41.72 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=34.7
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCc
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKS 282 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKh 282 (371)
..+||.||.||.+|.+.|..+=++ -+.-+..+..+.+.++ ||+-|-..
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 66 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLF----NMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 66 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456899999999999888665543 3456666666666665 99888654
No 43
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=94.09 E-value=0.012 Score=43.77 Aligned_cols=51 Identities=20% Similarity=0.399 Sum_probs=38.5
Q ss_pred CccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
||-||.||.+|.+.+..+=++ -+..+..+.++.+.++ ||+-|-....+|+.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV----NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 789999999999888766543 4456777777777776 99999876655544
No 44
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=94.07 E-value=0.029 Score=41.93 Aligned_cols=52 Identities=15% Similarity=0.275 Sum_probs=37.2
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
.+||-||.||.+|.+.+..+=++ -+..+..+..+.+.++ ||+-|-....+|.
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 1 MRRKRRVLFSQAQVYELERRFKQ----QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp CCSSSCSSCCHHHHHHHHHHHHH----SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCccCHHHHHHHHHHHHh----CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 36899999999999888666553 2345666666666666 9999876555444
No 45
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=94.06 E-value=0.011 Score=46.24 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=33.9
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAK 286 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~K 286 (371)
..+||.||.||.+|.+.|..+=+ +-+.-+..+..+.+.++ ||+-|-....+|
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~----~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFH----FNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHh----ccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 34699999999999988865544 23456666677776666 999887654444
No 46
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=93.99 E-value=0.02 Score=49.46 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=37.6
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
..+||.||.||.+|++.+..+-++- +.-+..+.++.+.++ ||+-|-....+|..
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~----~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKEN----KRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 4569999999999999887666554 567777777777766 99999887655554
No 47
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=93.67 E-value=0.025 Score=48.63 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=34.4
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
...+||-||.||.+|++.+..+=++ -++-+..+..+.+.++ ||+-|.....+|+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGE----HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3457889999999999887655444 3345555555555555 9999987655554
No 48
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=93.57 E-value=0.019 Score=50.37 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=33.0
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
...+||.||.||.+|++.|..+=++ -++-+..+..+.+.++ ||+-|.....+|+.
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~----~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLK----CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ----------CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cccCCCCceeccHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 3467889999999999988666554 3456666666666666 99999887666655
No 49
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.51 E-value=0.059 Score=41.12 Aligned_cols=52 Identities=8% Similarity=0.075 Sum_probs=38.1
Q ss_pred CccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCCC
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRDL 289 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~~ 289 (371)
.+.|++||.+|.+.+..+=++ -+.-+..+..+.+.++ ||+-|-....+|+..
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQ----NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 345678999999888766555 3456777777777776 999998877666653
No 50
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=93.47 E-value=0.051 Score=40.92 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=39.9
Q ss_pred CCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 233 KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
.++-||.||.+|.+.+..+=++ -+..+..+.++.+.++ ||+-|.....+|+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK----NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3789999999999998776554 2456677777777776 99999887666654
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=93.42 E-value=0.046 Score=42.40 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=40.4
Q ss_pred CCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 233 KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
.||.||.||.+|++.|..+-. ...+-+.-+.++.++.+.++ ||+-|-....+|+.
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~-~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFY-SHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHH-TTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCCHHHHHHHHHHHH-HhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcc
Confidence 379999999999999887652 12244567888888888887 99999876655543
No 52
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=93.23 E-value=0.03 Score=44.66 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=34.0
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
..+||.||.||.+|.+.+..+=++ -+.-+..+..+.+.++ ||+-|-....+|+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHF----NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 457899999999999887655443 3456666666666666 9998876554443
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=92.34 E-value=0.094 Score=39.44 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=40.5
Q ss_pred CCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 233 KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
.||.||.||.+|++.|..+-.. ..+-+.-+.++.++.+.++ ||+-|-.....|+.
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~-~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYS-HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCcCCHHHHHHHHHHHHH-hccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 3799999999999998776521 1234567778888888877 99998776554443
No 54
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=92.24 E-value=0.084 Score=41.63 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=42.4
Q ss_pred ccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCCCCC
Q 017477 235 RFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRDLNG 291 (371)
Q Consensus 235 RFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~~~~ 291 (371)
+-|+|||.||.+.|...=++ =+..+.++.++...++ ||+-|.....+|....-
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~----~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~w 65 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ----CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKW 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHHH
Confidence 45678999999999876663 3789999999999888 99999887776665543
No 55
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=92.06 E-value=0.11 Score=40.52 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=36.3
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNK 281 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNK 281 (371)
.++|-||.||.+|++.|..+-++ .|.-+.-+..+.++.+.++ ||+-|-.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~-~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR 82 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 82 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHH-TTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHH-hCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45666999999999998766542 3334567788888888877 9987753
No 56
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=90.93 E-value=0.034 Score=48.15 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=36.3
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTF 284 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl 284 (371)
..+||.||.||.+|++.+..+-+ +-+..+..+..+.+.++ ||+-|.....
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~----~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 151 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFL----KSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKG 151 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTT----TCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHc----cCCCCCHHHHHHHHHHcCCChhheeeccccccccc
Confidence 46789999999999998865432 23445666777777666 9999876543
No 57
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.86 E-value=0.09 Score=43.70 Aligned_cols=58 Identities=26% Similarity=0.440 Sum_probs=37.7
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhc-------------------------cc-eeeecCCcC
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCN-------------------------EV-VWMHNNKST 283 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~-------------------------EI-VWMHNNKht 283 (371)
+..+||-||+||.+|...|..+=++-= ...+.+-+++.+-|+ .| ||+-|-+..
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 456899999999999998865543322 222223345555663 12 999998876
Q ss_pred CCCCC
Q 017477 284 FAKRD 288 (371)
Q Consensus 284 l~Kk~ 288 (371)
.+++.
T Consensus 82 ~kr~~ 86 (102)
T 2da6_A 82 EAFRQ 86 (102)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 66554
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.48 E-value=0.43 Score=37.65 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=34.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 238 TKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
.+||.+|.+.|..+=++- +..+..+.++.+.++ ||+-|-.....++.
T Consensus 18 k~~t~~Ql~~Le~~F~~~----~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKS----SFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCHHHHHHHHHHHHHC----SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHHHHHHHHccC----CCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 459999998887665553 456777777777776 99999876554444
No 59
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=89.35 E-value=0.094 Score=38.02 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=31.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCC
Q 017477 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAK 286 (371)
Q Consensus 237 RTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~K 286 (371)
||.||.+|.+.|..+=++ -+.-+..+.++.+.++ ||+-|-....+|
T Consensus 3 Rt~ft~~Q~~~Le~~F~~----~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR----THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp --CCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred CcccCHHHHHHHHHHHHc----CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 799999999988766554 2346666677777666 999887655444
No 60
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=86.76 E-value=0.42 Score=37.02 Aligned_cols=54 Identities=6% Similarity=0.119 Sum_probs=37.8
Q ss_pred CCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCC
Q 017477 233 RKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKR 287 (371)
Q Consensus 233 KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk 287 (371)
|++-||.||.+|.+.|..+-++ .+.-..-+..+.++.+.++ ||+-|-.....|.
T Consensus 2 K~krr~rft~~q~~~Le~~f~~-h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH-TSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHh-hCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 4556777999999998776553 2334567788888888877 9999987655444
No 61
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=86.33 E-value=0.24 Score=40.40 Aligned_cols=54 Identities=26% Similarity=0.431 Sum_probs=30.8
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHH---HHHHHhcc--------------------c------eeeecCC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDD---LVHEFCNE--------------------V------VWMHNNK 281 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~---~VqqFC~E--------------------I------VWMHNNK 281 (371)
..+||.||.||.+|.+.+..+=++ -+.-|.. ++.+-|++ | ||+-|-.
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~----~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER----QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT----CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 357999999999999888654433 3344443 33334331 4 9999987
Q ss_pred cCCCCCC
Q 017477 282 STFAKRD 288 (371)
Q Consensus 282 htl~Kk~ 288 (371)
...++|.
T Consensus 83 ~k~k~k~ 89 (99)
T 1lfb_A 83 KEEAFRH 89 (99)
T ss_dssp HTTSCCC
T ss_pred HHHHHhc
Confidence 7665554
No 62
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=86.27 E-value=0.2 Score=46.65 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=26.8
Q ss_pred CCCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhc
Q 017477 230 SGGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCN 272 (371)
Q Consensus 230 s~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~ 272 (371)
...+||.||+||.+|...|..+=++--+ ..+..-+++.+-|+
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~Y-P~~~~ReeLA~~~n 180 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKN-PSKEEREALVEECN 180 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSS-CCHHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHC
Confidence 3457999999999999999887765111 11112256677776
No 63
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=85.36 E-value=0.23 Score=37.49 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=37.9
Q ss_pred CccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
++-||.||.+|.+.|..+=++. -+.-+..+..+.+.++ ||+-|......|+.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 4668999999999887665431 2346667777777776 99999887666554
No 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=84.77 E-value=0.61 Score=33.55 Aligned_cols=44 Identities=9% Similarity=0.244 Sum_probs=33.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCC
Q 017477 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNK 281 (371)
Q Consensus 237 RTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNK 281 (371)
||.||.+|.+.|..+-++ .+.-..-+.++.++.+.++ ||+-|-.
T Consensus 2 r~~ft~~q~~~Le~~f~~-~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR 53 (60)
T 1k61_A 2 GHRFTKENVRILESWFAK-NIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRR 53 (60)
T ss_dssp CCSCCHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHHHHHH-cCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 799999999998776653 2224567778888888877 9988754
No 65
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=83.93 E-value=0.5 Score=42.82 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=25.2
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhc
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCN 272 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~ 272 (371)
..+||.||+||.+|.+.|..+=++--+==.... +++.+-|+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~R-e~la~~~~ 153 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEER-ETLVEECN 153 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTT-HHHHHHHH
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHhC
Confidence 456899999999999999877777554322223 34444454
No 66
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=83.38 E-value=0.32 Score=36.44 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=38.0
Q ss_pred CccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
.|-||.||.+|.+.|..+-++. -+..+..+.++.+.++ ||+-|-....+|+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 3568999999999887765431 2456677777777777 99999887666654
No 67
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=80.42 E-value=1.9 Score=34.53 Aligned_cols=50 Identities=12% Similarity=0.227 Sum_probs=35.2
Q ss_pred CccccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
++|| +||.+|.+.+...=++ =+.-+..+..+...++ ||+-|......|+.
T Consensus 13 ~k~k-~~t~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 13 QKFK-EKTAEQLRVLQASFLN----SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCC-CCCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hhhc-cCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 4555 9999998887544333 3457777778877776 99999876555543
No 68
>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*
Probab=73.65 E-value=1.7 Score=40.88 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.8
Q ss_pred cccCCCHHHHHHHHHHHHHhCCc
Q 017477 236 FRTKFSQSQKEKMFEFAERVGWK 258 (371)
Q Consensus 236 FRTKFTqEQKEKMl~FAEKLGWR 258 (371)
-++.||+.||+||+++-+ ++|
T Consensus 237 C~~~FT~gQ~~RM~~~~~--~~R 257 (262)
T 2cki_A 237 CMVMFTQGQATRVNACLD--GPR 257 (262)
T ss_dssp TCCBCBHHHHHHHHHHHH--TTT
T ss_pred cccccCHHHHHHHHHHHH--HHH
Confidence 357899999999999887 565
No 69
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=63.33 E-value=4 Score=28.99 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=25.8
Q ss_pred cCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCc
Q 017477 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKS 282 (371)
Q Consensus 238 TKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKh 282 (371)
|.||.+|.+.+..+=++ -+..+..+..+.+.++ ||+-|-..
T Consensus 2 T~ft~~Ql~~Le~~F~~----~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 50 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR----QKYLASAERAALAKALRMTDAQVKTWFQNRRT 50 (56)
T ss_dssp --CCHHHHHHHHHHHHH----CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh----cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhh
Confidence 78999998888655443 2345566666666655 88877543
No 70
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=62.77 E-value=4.3 Score=34.31 Aligned_cols=29 Identities=28% Similarity=0.688 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCcc----cCCCHHHHHHHhccc
Q 017477 246 EKMFEFAERVGWKM----QKRDDDLVHEFCNEV 274 (371)
Q Consensus 246 EKMl~FAEKLGWRI----QK~DE~~VqqFC~EI 274 (371)
..|+++--||||++ |.+||.++++|-+.|
T Consensus 65 kemlelisklgykvflllqdqdeneleefkrki 97 (134)
T 2lci_A 65 KEMLELISKLGYKVFLLLQDQDENELEEFKRKI 97 (134)
T ss_dssp HHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCceeEEEeecCchhHHHHHHHHH
Confidence 45999999999994 999999999999887
No 71
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=60.30 E-value=6 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=23.7
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCcc
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKM 259 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRI 259 (371)
..+++..+||+|+++.+.+.|+..|..+
T Consensus 14 r~~~i~vRlt~eE~~~l~~~A~~~g~s~ 41 (51)
T 2ba3_A 14 KTVVRTLRFSPVEDETIRKKAEDSGLTV 41 (51)
T ss_dssp CSEEEEEEECHHHHHHHHHHHHHHTCCH
T ss_pred CceeEEEEECHHHHHHHHHHHHHhCCCH
Confidence 3466777899999999999999999653
No 72
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=54.74 E-value=11 Score=28.67 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=19.0
Q ss_pred CCccccCCCHHHHHHHHHHHHHhCC
Q 017477 233 RKRFRTKFSQSQKEKMFEFAERVGW 257 (371)
Q Consensus 233 KKRFRTKFTqEQKEKMl~FAEKLGW 257 (371)
+||.|.+||.|+|++.+...+ -|.
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~-~g~ 39 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIH-DGE 39 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHH-HTC
T ss_pred CCCCCCCCCHHHHHHHHHHHH-CCC
Confidence 456788999999999988764 454
No 73
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=49.07 E-value=12 Score=29.72 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=19.3
Q ss_pred cccCCCHHHHHHHHHHHHHhCCc
Q 017477 236 FRTKFSQSQKEKMFEFAERVGWK 258 (371)
Q Consensus 236 FRTKFTqEQKEKMl~FAEKLGWR 258 (371)
-|++||.|||.+++++.+.-|-.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~ 26 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDL 26 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTS
T ss_pred cceeCCHHHHHHHHHHHHHCCCC
Confidence 47899999999999998766654
No 74
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=46.75 E-value=20 Score=26.52 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.7
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhC
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVG 256 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLG 256 (371)
.++|.|.+||+|.-++++++.++.|
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G 29 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYG 29 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC
Confidence 3577889999999999999999999
No 75
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=46.16 E-value=16 Score=26.55 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=21.4
Q ss_pred CccccCCCHHHHHHHHHHHHHhC
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVG 256 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLG 256 (371)
..+|.+||+|.=+++++..++.|
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G 27 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG 27 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC
Confidence 57788999999999999999999
No 76
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=45.82 E-value=16 Score=30.61 Aligned_cols=26 Identities=8% Similarity=0.102 Sum_probs=21.5
Q ss_pred cccC-CCHHHHHHHHHHHHHhCCcccC
Q 017477 236 FRTK-FSQSQKEKMFEFAERVGWKMQK 261 (371)
Q Consensus 236 FRTK-FTqEQKEKMl~FAEKLGWRIQK 261 (371)
-||+ .++|.+++++++|+++||.+.+
T Consensus 128 sR~~~~~~~~~~~~~~~~~~~G~~~~~ 154 (174)
T 2hzq_A 128 ARNVALPPETVDSLKNILTSNNIDVKK 154 (174)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTCCCTT
T ss_pred ECCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 3554 6899999999999999997654
No 77
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=45.52 E-value=4.1 Score=35.37 Aligned_cols=40 Identities=35% Similarity=0.750 Sum_probs=27.0
Q ss_pred CccccCCCHHHHHHHHHHHHH-hC----CcccCCCHHHHHHHhcccee
Q 017477 234 KRFRTKFSQSQKEKMFEFAER-VG----WKMQKRDDDLVHEFCNEVVW 276 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEK-LG----WRIQK~DE~~VqqFC~EIVW 276 (371)
.|.++.+|.+|++++.++|++ +| |.....++ .-||+|.||
T Consensus 73 ~Rl~~~ls~~~~~~~~~~a~~~~G~pY~~~f~~~~~---~~yCSelV~ 117 (186)
T 2if6_A 73 RRVEGGLSVEQQQKLAQTAKRYLGKPYDFSFSWSDD---RQYCSEVVW 117 (186)
T ss_dssp EEETTCCCHHHHHHHHHHHGGGTTCCBCTTCCSSSS---SBCHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHcCCcCCccccCCCC---cEEhHHHHH
Confidence 355566899999999999987 33 22222222 459999944
No 78
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=43.65 E-value=17 Score=26.95 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcccCCC
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQKRD 263 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQK~D 263 (371)
.+++|-++|+++.|++||++....-
T Consensus 29 ~vs~et~~rI~~aa~~lgY~pn~~a 53 (65)
T 1uxc_A 29 RVSDKTVEKVMAVVREHNYHPNAVA 53 (65)
T ss_dssp TCTTHHHHHHHHHHHHHTCCCC---
T ss_pred CCCHHHHHHHHHHHHHhCCCccHHH
Confidence 4889999999999999999876443
No 79
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1
Probab=43.56 E-value=14 Score=30.63 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.1
Q ss_pred ccC-CCHHHHHHHHHHHHHhCCccc
Q 017477 237 RTK-FSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 237 RTK-FTqEQKEKMl~FAEKLGWRIQ 260 (371)
||+ .++|.+++++++|+++||.+.
T Consensus 135 R~~~~~~~~~~~~~~~~~~~G~~~~ 159 (174)
T 1gka_B 135 RTPQTSGPAVEKTAAVFNKNGVEFS 159 (174)
T ss_dssp SSCCSSSHHHHHHHHHHHHHTCCGG
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 443 578999999999999998754
No 80
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=43.03 E-value=19 Score=26.84 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHhCCccc
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQ 260 (371)
.+++|-++|.++.|++|||+..
T Consensus 35 ~vs~~t~~rV~~~a~~lgY~pn 56 (67)
T 2l8n_A 35 KVSQATRNRVEKAAREVGYLPQ 56 (67)
T ss_dssp CSCHHHHHHHHHHHHHHCCCC-
T ss_pred CCCHHHHHHHHHHHHHhCCCcc
Confidence 4789999999999999999854
No 81
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.82 E-value=19 Score=26.70 Aligned_cols=22 Identities=9% Similarity=0.074 Sum_probs=19.6
Q ss_pred ccccCCCHHHHHHHHHHHHHhC
Q 017477 235 RFRTKFSQSQKEKMFEFAERVG 256 (371)
Q Consensus 235 RFRTKFTqEQKEKMl~FAEKLG 256 (371)
..|-+||+|.-++++++.++.|
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G 28 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYG 28 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHC
Confidence 3456999999999999999999
No 82
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=42.08 E-value=18 Score=29.75 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHhCCccc
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQ 260 (371)
..++|+++++++||+++|....
T Consensus 126 ~~~~~~~~~f~~~~~~~G~~~~ 147 (162)
T 3o22_A 126 TPRAELKEKFTAFCKAQGFTED 147 (162)
T ss_dssp SCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3789999999999999998754
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=41.10 E-value=17 Score=25.58 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.0
Q ss_pred ccCCCHHHHHHHHHHH
Q 017477 237 RTKFSQSQKEKMFEFA 252 (371)
Q Consensus 237 RTKFTqEQKEKMl~FA 252 (371)
|.|||.|+|++++++.
T Consensus 3 r~~ys~efK~~~~~~~ 18 (59)
T 2glo_A 3 RRIFTPHFKLQVLESY 18 (59)
T ss_dssp CCCCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH
Confidence 5689999999986654
No 84
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=40.22 E-value=9.6 Score=31.80 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=18.6
Q ss_pred CccccCCCHHHHHHHHHHHH
Q 017477 234 KRFRTKFSQSQKEKMFEFAE 253 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAE 253 (371)
||.|+.+|-|||-+|+++++
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~ 25 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFF 25 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHH
Confidence 78999999999999999993
No 85
>1dj7_A Ferredoxin thioredoxin reductase: catalytic chain; 4Fe-4S cluster binding fold with CXCX16CXCX8CXC binding MOTI electron transport; 1.60A {Synechocystis SP} SCOP: g.36.1.1 PDB: 2pu9_A 2pvo_A 2puo_A 2puk_A 2pvg_A 2pvd_A
Probab=40.06 E-value=23 Score=30.19 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=19.1
Q ss_pred CHHHHHHHHHH----HHHhCCcccCCCH
Q 017477 241 SQSQKEKMFEF----AERVGWKMQKRDD 264 (371)
Q Consensus 241 TqEQKEKMl~F----AEKLGWRIQK~DE 264 (371)
+++.+|+|..| ||+.||++....+
T Consensus 7 ~~~~~e~~~~f~ek~ae~~G~~~NpD~e 34 (117)
T 1dj7_A 7 NNKTLAAMKNFAEQYAKRTDTYFCSDLS 34 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBCBSSHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCEECCCHH
Confidence 47888899888 7889999976544
No 86
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=38.87 E-value=21 Score=28.93 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.3
Q ss_pred cc-CCCHHHHHHHHHHHHHhCCcccC
Q 017477 237 RT-KFSQSQKEKMFEFAERVGWKMQK 261 (371)
Q Consensus 237 RT-KFTqEQKEKMl~FAEKLGWRIQK 261 (371)
|| ..++|++|+.++||+++|....+
T Consensus 120 R~~~~~~e~~~~f~~~~~~~G~~~~~ 145 (157)
T 1dzk_A 120 KGTDIEDQDLEKFKEVTRENGIPEEN 145 (157)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCGGG
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 55 58999999999999999987643
No 87
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A*
Probab=37.66 E-value=22 Score=30.15 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.7
Q ss_pred ccC-CCHHHHHHHHHHHHHhCCccc
Q 017477 237 RTK-FSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 237 RTK-FTqEQKEKMl~FAEKLGWRIQ 260 (371)
||+ .++|+++++++||+++|....
T Consensus 160 R~~~l~~e~~~~f~~~~~~~G~~~~ 184 (198)
T 3cbc_A 160 RTKELTSELKENFIRFSKSLGLPEN 184 (198)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 554 899999999999999998754
No 88
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=37.13 E-value=26 Score=26.10 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.5
Q ss_pred CccccCCCHHHHHHHHHHHHHhC
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVG 256 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLG 256 (371)
.+.|.+||+|.-++++++.++.|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G 30 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYG 30 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHccC
Confidence 44567899999999999999998
No 89
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=36.98 E-value=25 Score=28.69 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHhCCcccC
Q 017477 240 FSQSQKEKMFEFAERVGWKMQK 261 (371)
Q Consensus 240 FTqEQKEKMl~FAEKLGWRIQK 261 (371)
.++|++|+.++||+++|....+
T Consensus 123 l~~e~~~~f~~~~~~~G~~~~~ 144 (156)
T 1bj7_A 123 FTPEELEKYQQLNSERGVPNEN 144 (156)
T ss_dssp CCHHHHHHHHHHHHHHTCCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 7899999999999999987653
No 90
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=36.82 E-value=9.5 Score=28.30 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCCCC
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAKRD 288 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~Kk~ 288 (371)
+||.||++.|.++-+. -++-...+..+-++.+.++ ||+-|-...++|..
T Consensus 4 ~f~~~~~~~L~~~f~~-h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQ-HLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp --CHHHHHHHHHHHHH-TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHH-hccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 7999999998665431 2333456677777777766 99999887666554
No 91
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=35.92 E-value=9.9 Score=27.78 Aligned_cols=23 Identities=39% Similarity=0.905 Sum_probs=16.6
Q ss_pred ccCccccccCCCCCCCCCCcccccccC--cccc
Q 017477 90 LDGCGEFMPSPTATPSDPTSLKCAACG--CHRN 120 (371)
Q Consensus 90 vDGCGEFMPSGeeGt~dp~ALKCAACG--CHRN 120 (371)
=|=||+|| .. ..|+|..|+ ||+-
T Consensus 25 C~~C~~~i--~k------qg~kC~~C~~~cH~k 49 (59)
T 1rfh_A 25 CDLCGREV--LR------QALRCANCKFTCHSE 49 (59)
T ss_dssp CTTTCSEE--CS------CCEECTTTSCEECHH
T ss_pred chhcchhh--hh------CccEeCCCCCeEehh
Confidence 57799999 22 379999984 5553
No 92
>1i4u_A Crustacyanin; lipocalin fold, antiparallel beta barrel, transport protein; 1.15A {Synthetic} SCOP: b.60.1.1 PDB: 1obq_A 1obu_A 1s2p_A 1h91_A 1gka_A 1s44_A
Probab=35.73 E-value=25 Score=29.86 Aligned_cols=24 Identities=8% Similarity=0.056 Sum_probs=20.1
Q ss_pred ccC-CCHHHHHHHHHHHHHhCCccc
Q 017477 237 RTK-FSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 237 RTK-FTqEQKEKMl~FAEKLGWRIQ 260 (371)
||+ .++|.+++++++|+++||.+.
T Consensus 138 R~~~~~~~~~~~~~~~~~~~G~d~~ 162 (181)
T 1i4u_A 138 RSANLADQYVKKCEAAFKNINVDTT 162 (181)
T ss_dssp SSSSCCHHHHHHHHHHHHHTTCCGG
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 443 689999999999999999754
No 93
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=35.66 E-value=17 Score=24.98 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=24.9
Q ss_pred CCCccccCCCHHHHHHHHHHHHHhCCccc
Q 017477 232 GRKRFRTKFSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 232 ~KKRFRTKFTqEQKEKMl~FAEKLGWRIQ 260 (371)
.+.|+--+++.|.++++.++|++.|-.+.
T Consensus 8 ~~~~i~vrl~~el~~~l~~~a~~~g~s~s 36 (55)
T 2k9i_A 8 NGIKLGVYIPQEWHDRLMEIAKEKNLTLS 36 (55)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHTCCHH
T ss_pred ccceEEEEcCHHHHHHHHHHHHHhCCCHH
Confidence 35788889999999999999999996543
No 94
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=35.35 E-value=21 Score=25.82 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=19.2
Q ss_pred cccCCCHHHHHHHHHHHHHhC
Q 017477 236 FRTKFSQSQKEKMFEFAERVG 256 (371)
Q Consensus 236 FRTKFTqEQKEKMl~FAEKLG 256 (371)
+|.+||+|.=+++++..++.|
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G 28 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLG 28 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHC
Confidence 366899999999999999999
No 95
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=35.25 E-value=10 Score=32.84 Aligned_cols=14 Identities=43% Similarity=0.956 Sum_probs=11.6
Q ss_pred CcccccccCccccc
Q 017477 108 TSLKCAACGCHRNF 121 (371)
Q Consensus 108 ~ALKCAACGCHRNF 121 (371)
-.|+|.|||.+|..
T Consensus 122 ~~l~C~ACGa~~~V 135 (138)
T 1nee_A 122 SLLKCEACGAKAPL 135 (138)
T ss_dssp TEEECSTTSCCCCS
T ss_pred EEEEccCCCCCccc
Confidence 47999999998753
No 96
>1qwd_A Outer membrane lipoprotein BLC; bacterial lipocalin, lipid binding protein; 1.75A {Escherichia coli} SCOP: b.60.1.1 PDB: 2aco_A* 3mbt_A
Probab=34.93 E-value=26 Score=30.07 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHhCCcccC
Q 017477 240 FSQSQKEKMFEFAERVGWKMQK 261 (371)
Q Consensus 240 FTqEQKEKMl~FAEKLGWRIQK 261 (371)
.++|.++++++||+++|+.+.+
T Consensus 147 l~~~~~~~~~~~~~~~G~d~~~ 168 (177)
T 1qwd_A 147 ISDEVKQEMLAVATREGFDVSK 168 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 6899999999999999997643
No 97
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=34.78 E-value=16 Score=27.79 Aligned_cols=28 Identities=32% Similarity=0.681 Sum_probs=19.6
Q ss_pred ccCccccccCCCCCCCCCCccccccc--CccccccccC
Q 017477 90 LDGCGEFMPSPTATPSDPTSLKCAAC--GCHRNFHRRE 125 (371)
Q Consensus 90 vDGCGEFMPSGeeGt~dp~ALKCAAC--GCHRNFHRKE 125 (371)
=|=||+|| .. ..|+|..| .||+-=+.+.
T Consensus 38 C~~C~~~l--~~------qG~kC~~C~~~cHkkC~~~V 67 (72)
T 2fnf_X 38 CDLCGREV--LR------QALRCANCKFTCHSECRSLI 67 (72)
T ss_dssp CTTTSSBC--SS------CCEECTTSSCEECTGGGGGC
T ss_pred hhhhhHHH--Hh------CcCccCCCCCeechhhhccC
Confidence 57799999 32 36999999 5666554443
No 98
>3ebw_A PER A 4 allergen; beta barrel, cockroach; HET: PE4; 2.80A {Periplaneta americana}
Probab=34.47 E-value=21 Score=30.14 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHHhCCcccC
Q 017477 240 FSQSQKEKMFEFAERVGWKMQK 261 (371)
Q Consensus 240 FTqEQKEKMl~FAEKLGWRIQK 261 (371)
.++|.+++++++|+++|+.+.+
T Consensus 130 l~~~~~~~~~~~~~~~G~~~~~ 151 (163)
T 3ebw_A 130 FDDATKAKVNEVLAPYNLSLDD 151 (163)
T ss_dssp CCHHHHHHHHHHHGGGTCCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 7899999999999999987643
No 99
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=33.04 E-value=9.4 Score=25.92 Aligned_cols=13 Identities=54% Similarity=0.979 Sum_probs=10.4
Q ss_pred CcccccccCcccc
Q 017477 108 TSLKCAACGCHRN 120 (371)
Q Consensus 108 ~ALKCAACGCHRN 120 (371)
-.|+|.|||=.|.
T Consensus 20 ~~l~C~aCG~~~~ 32 (36)
T 1k81_A 20 HLLKCMACGAIRP 32 (36)
T ss_dssp EEEEEETTTEEEE
T ss_pred EEEEhhcCCCccc
Confidence 3699999997664
No 100
>2wwx_B DRRA, SIDM; golgi apparatus, protein transport, ER-golgi transport, endoplasmic reticulum, prenylation, lipoprotein, nucleotide-binding; 1.50A {Legionella pneumophila} PDB: 3jz9_A 3jza_B
Probab=31.82 E-value=7.8 Score=34.83 Aligned_cols=19 Identities=37% Similarity=0.849 Sum_probs=15.2
Q ss_pred HHHHHhccc------eeeecCCcCC
Q 017477 266 LVHEFCNEV------VWMHNNKSTF 284 (371)
Q Consensus 266 ~VqqFC~EI------VWMHNNKhtl 284 (371)
-+-||-.+| +||||-|--+
T Consensus 154 gimqfikdvadptskiwmhntkalm 178 (217)
T 2wwx_B 154 GIMQFIKDVADPTSKIWMHNTKALM 178 (217)
T ss_dssp HHHHHHHHHSCTTCEETTEEHHHHH
T ss_pred HHHHHHHHhcCcchhHHHhhhHHHH
Confidence 467898888 9999988544
No 101
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=31.69 E-value=11 Score=32.70 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=6.0
Q ss_pred CcccccccCcccc
Q 017477 108 TSLKCAACGCHRN 120 (371)
Q Consensus 108 ~ALKCAACGCHRN 120 (371)
-.|+|.|||.+|.
T Consensus 123 ~~l~C~ACGa~~~ 135 (139)
T 3cw2_K 123 WYIVCLACGAQTP 135 (139)
T ss_dssp TTSSCCC------
T ss_pred EEEEecCCCCCCc
Confidence 4699999998875
No 102
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=30.73 E-value=52 Score=23.42 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.3
Q ss_pred CccccCCCHHHHHHHHHHHHHhC
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVG 256 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLG 256 (371)
...|.+||+|.-++++++.++.|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G 27 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFG 27 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC
Confidence 34567999999999999999998
No 103
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=30.64 E-value=35 Score=27.49 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=20.7
Q ss_pred cc-CCCHHHHHHHHHHHHHhCCcccC
Q 017477 237 RT-KFSQSQKEKMFEFAERVGWKMQK 261 (371)
Q Consensus 237 RT-KFTqEQKEKMl~FAEKLGWRIQK 261 (371)
|| ..++|++|+.++||+++|-...+
T Consensus 114 R~~~l~~e~~~~f~~~~~~~G~~~~~ 139 (151)
T 1e5p_A 114 KGNALTPEENEILVQFAHEKKIPVEN 139 (151)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCCGGG
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 44 46899999999999999987543
No 104
>1iyr_A DFF45, DNA fragmentation factor alpha subunit; apoptosis, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: DNA; NMR {Homo sapiens} SCOP: a.164.1.1 PDB: 1koy_A*
Probab=30.43 E-value=12 Score=31.70 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCcccCCCHHHHHHHh-ccc-------eeeecCCcCCCCCCC
Q 017477 245 KEKMFEFAERVGWKMQKRDDDLVHEFC-NEV-------VWMHNNKSTFAKRDL 289 (371)
Q Consensus 245 KEKMl~FAEKLGWRIQK~DE~~VqqFC-~EI-------VWMHNNKhtl~Kk~~ 289 (371)
||--.++|+-|+|.++|-+ .||+-| +|. -=+|+-.+..++|..
T Consensus 45 kedpkALa~aL~Wd~~kt~--avqqAC~qELs~RlQQVQsL~SLrs~sa~~~~ 95 (111)
T 1iyr_A 45 KEDPKALAVALNWDIKKTE--TVQEACERELALRLQQTQSLHSLRSISASKAS 95 (111)
T ss_dssp TSCHHHHHHHTCSCHHHHH--HHHHHHHHHHHHHHGGGCCCSCC---------
T ss_pred ccCHHHHHHHHcccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Confidence 3444689999999999853 455555 444 456777766665543
No 105
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=30.14 E-value=18 Score=24.64 Aligned_cols=10 Identities=50% Similarity=0.939 Sum_probs=8.5
Q ss_pred CCcccccccC
Q 017477 107 PTSLKCAACG 116 (371)
Q Consensus 107 p~ALKCAACG 116 (371)
.+++||.||.
T Consensus 19 ~~~~kC~aCe 28 (34)
T 3gj5_B 19 ADSTKCIACE 28 (34)
T ss_dssp SSCSBCTTTC
T ss_pred cccCEEcccC
Confidence 4589999996
No 106
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=29.75 E-value=14 Score=32.32 Aligned_cols=13 Identities=46% Similarity=0.920 Sum_probs=10.8
Q ss_pred CcccccccCcccc
Q 017477 108 TSLKCAACGCHRN 120 (371)
Q Consensus 108 ~ALKCAACGCHRN 120 (371)
-.|+|.|||..|.
T Consensus 124 ~~l~C~ACGa~~~ 136 (148)
T 2d74_B 124 HFLKCEACGAETP 136 (148)
T ss_dssp BCCCCSSSCCCCC
T ss_pred EEEEecCCCCCcc
Confidence 4699999998764
No 107
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=29.72 E-value=23 Score=26.89 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=21.1
Q ss_pred ccCCCHHHHHHHHHHHHHh-CCcccCCCHHHHHHHhccc
Q 017477 237 RTKFSQSQKEKMFEFAERV-GWKMQKRDDDLVHEFCNEV 274 (371)
Q Consensus 237 RTKFTqEQKEKMl~FAEKL-GWRIQK~DE~~VqqFC~EI 274 (371)
|.+||.|+|.+++.....- |+. |.+.|.+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~s--------~~~ia~~~ 33 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGAS--------LQQIANDL 33 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGSC--------HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCh--------HHHHHHHH
Confidence 4689999999998776443 543 55666654
No 108
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus}
Probab=29.50 E-value=37 Score=28.66 Aligned_cols=21 Identities=5% Similarity=0.215 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHhCCcc
Q 017477 239 KFSQSQKEKMFEFAERVGWKM 259 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRI 259 (371)
..++|+++++++||+++|...
T Consensus 138 ~~~~e~~~~f~~~~~~~G~~~ 158 (184)
T 2l5p_A 138 KITHKTIDRFIALTKTQNLTK 158 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCh
Confidence 478999999999999999764
No 109
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=29.33 E-value=22 Score=25.95 Aligned_cols=35 Identities=9% Similarity=0.027 Sum_probs=23.5
Q ss_pred ccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc
Q 017477 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV 274 (371)
Q Consensus 237 RTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI 274 (371)
|+++|+|+.+.+..|+++|-...... -.++|+..+
T Consensus 3 ~~~~~~~~~~~~~~~g~~l~~~R~~~---sq~~lA~~~ 37 (86)
T 2ofy_A 3 RVPLTAEELERGQRLGELLRSARGDM---SMVTVAFDA 37 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTTS---CHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHh
Confidence 67788888888888888775443333 345666555
No 110
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=29.10 E-value=14 Score=33.10 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.0
Q ss_pred CcccccccCcccccc
Q 017477 108 TSLKCAACGCHRNFH 122 (371)
Q Consensus 108 ~ALKCAACGCHRNFH 122 (371)
-.|+|.|||.+|.-.
T Consensus 118 ~~l~C~ACGa~~~V~ 132 (170)
T 2g2k_A 118 IGNSCKACGYRGMLD 132 (170)
T ss_dssp EEEEETTTCCCCCSC
T ss_pred EEEEccccCCccccc
Confidence 369999999987653
No 111
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=28.96 E-value=37 Score=28.97 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHHHHhCCcccC
Q 017477 240 FSQSQKEKMFEFAERVGWKMQK 261 (371)
Q Consensus 240 FTqEQKEKMl~FAEKLGWRIQK 261 (371)
.++|.++++++||+++|....+
T Consensus 146 l~~e~~~~f~~~~~~~G~~~~~ 167 (190)
T 3s26_A 146 LSPELKERFTRFAKSLGLKDDN 167 (190)
T ss_dssp CCHHHHHHHHHHHHHTTCCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 7899999999999999986643
No 112
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens}
Probab=28.91 E-value=26 Score=28.14 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHhCCccc
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQ 260 (371)
..++|.+++++++|+++|....
T Consensus 128 ~~~~~~~~~~~~~~~~~G~~~~ 149 (161)
T 2xst_A 128 DVSPQALKSFQDFYPTLGLPKD 149 (161)
T ss_dssp SCCHHHHHHHHHHGGGGTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3689999999999999998654
No 113
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=28.89 E-value=12 Score=24.88 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=23.2
Q ss_pred CCccccCCCHHHHHHHHHHHHHhCC
Q 017477 233 RKRFRTKFSQSQKEKMFEFAERVGW 257 (371)
Q Consensus 233 KKRFRTKFTqEQKEKMl~FAEKLGW 257 (371)
|||+--++..|..+++-++|++.|.
T Consensus 2 k~ritv~l~~~l~~~Ld~~a~~~g~ 26 (45)
T 2cpg_A 2 KKRLTITLSESVLENLEKMAREMGL 26 (45)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHTC
T ss_pred CceEEEecCHHHHHHHHHHHHHHCc
Confidence 6888889999999999999999995
No 114
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=28.87 E-value=9.8 Score=28.73 Aligned_cols=48 Identities=4% Similarity=0.135 Sum_probs=29.1
Q ss_pred ccccCCCHHHHHHHHHHH-HHhCCcccCCCHHHHHHHhccc--------eeeecCCcCCCC
Q 017477 235 RFRTKFSQSQKEKMFEFA-ERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKSTFAK 286 (371)
Q Consensus 235 RFRTKFTqEQKEKMl~FA-EKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKhtl~K 286 (371)
|-|+.||.+|.+.+..+- ++ -+.-+....++.+.++ ||+-|-....++
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~----~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV----TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT----CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHhc----CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 345556777766654443 22 2445666666666666 999987764443
No 115
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=28.84 E-value=40 Score=27.34 Aligned_cols=20 Identities=5% Similarity=-0.017 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHhCCcc
Q 017477 240 FSQSQKEKMFEFAERVGWKM 259 (371)
Q Consensus 240 FTqEQKEKMl~FAEKLGWRI 259 (371)
.++|+++++++||+++|...
T Consensus 123 l~~~~~~~~~~~~~~~G~~~ 142 (164)
T 1epa_A 123 DNGEALYNFRKITSDHGFSE 142 (164)
T ss_dssp CCHHHHHHHHHHHHHTTCCG
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 68999999999999999954
No 116
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=28.52 E-value=40 Score=27.23 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHhCCccc
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQ 260 (371)
..++|+++++++||+++|....
T Consensus 122 ~~~~~~~~~f~~~~~~~G~~~~ 143 (159)
T 1ew3_A 122 DVSPEIKEEFVKIVQKRGIVKE 143 (159)
T ss_dssp SCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 5789999999999999998754
No 117
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C
Probab=28.20 E-value=40 Score=28.38 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHhCCccc
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQ 260 (371)
..++|.++++++||+++|....
T Consensus 136 ~l~~e~~~~f~~~~~~~G~~~~ 157 (182)
T 1lf7_A 136 PVSDSVLSGFEQRVQEAHLTED 157 (182)
T ss_dssp SCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 4789999999999999998743
No 118
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.00 E-value=14 Score=32.67 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=12.4
Q ss_pred CcccccccCcccccc
Q 017477 108 TSLKCAACGCHRNFH 122 (371)
Q Consensus 108 ~ALKCAACGCHRNFH 122 (371)
-.|+|.|||..|..-
T Consensus 125 ~~l~C~ACGa~~~V~ 139 (157)
T 2e9h_A 125 IGNSCKACGYRGMLD 139 (157)
T ss_dssp EEEECSSSCCEEECC
T ss_pred EEEEccCCCCCCccc
Confidence 368999999988765
No 119
>3bx8_A Engineered human lipocalin 2; protein design, ligand binding protein, de novo protein, protein binding; HET: 1PE PE5; 2.00A {Homo sapiens} PDB: 3bx7_A* 3dtq_A 3dsz_A* 1l6m_A* 3tf6_A* 1x71_A* 1x89_A* 1x8u_A* 3fw4_A 3fw5_A 3k3l_A* 3pec_A* 3ped_A* 3tzs_A* 1ngl_A 1dfv_A* 1qqs_A*
Probab=27.66 E-value=42 Score=27.92 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHHHHHhCCcc
Q 017477 239 KFSQSQKEKMFEFAERVGWKM 259 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRI 259 (371)
..++|.+++++++|+++|...
T Consensus 143 ~l~~~~~~~~~~~~~~~G~~~ 163 (178)
T 3bx8_A 143 ELASELKENFIRFSKSLGLPE 163 (178)
T ss_dssp CCCHHHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 368999999999999999854
No 120
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=27.39 E-value=48 Score=22.90 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.1
Q ss_pred ccCCCHHHHHHHHHHHHHhCC
Q 017477 237 RTKFSQSQKEKMFEFAERVGW 257 (371)
Q Consensus 237 RTKFTqEQKEKMl~FAEKLGW 257 (371)
|.+||+|.-++++++.++.|=
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~ 23 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT 23 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHhCC
Confidence 678999999999999999883
No 121
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=26.95 E-value=34 Score=28.24 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=13.9
Q ss_pred cCCCHHHHHHHHHHHHH
Q 017477 238 TKFSQSQKEKMFEFAER 254 (371)
Q Consensus 238 TKFTqEQKEKMl~FAEK 254 (371)
--+|+|||+++.+.-|+
T Consensus 89 ~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 89 NILTPEQKKQFNANFEK 105 (108)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 45799999999887665
No 122
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=26.83 E-value=21 Score=23.99 Aligned_cols=10 Identities=50% Similarity=1.275 Sum_probs=8.5
Q ss_pred CCcccccccC
Q 017477 107 PTSLKCAACG 116 (371)
Q Consensus 107 p~ALKCAACG 116 (371)
++++||.||.
T Consensus 19 ~~~~kC~aC~ 28 (33)
T 3gj3_B 19 PEAVKCVACE 28 (33)
T ss_dssp TTCSBCTTTC
T ss_pred cccCEEcccC
Confidence 5689999996
No 123
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=26.44 E-value=38 Score=27.96 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=21.0
Q ss_pred cc-CCCHHHHHHHHHHHHHhCCcccC
Q 017477 237 RT-KFSQSQKEKMFEFAERVGWKMQK 261 (371)
Q Consensus 237 RT-KFTqEQKEKMl~FAEKLGWRIQK 261 (371)
|| ..++|.++++++||+++|....+
T Consensus 141 R~~~~~~~~~~~f~~~~~~~G~~~~~ 166 (181)
T 2a2u_A 141 RTKDLSSDIKEKFAKLCEAHGITRDN 166 (181)
T ss_dssp SSSSCCHHHHHHHHHHHHTTTCCGGG
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCHHH
Confidence 44 57899999999999999986543
No 124
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=26.38 E-value=38 Score=27.77 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHhCCcccC
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQK 261 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQK 261 (371)
..++|++++.++||+++|....+
T Consensus 134 ~~~~e~~~~f~~~~~~~G~~~~~ 156 (166)
T 2ra6_A 134 NLSNEIKKRFEEDFMNRGFRREN 156 (166)
T ss_dssp CCCHHHHHHHHHHHHTTTCCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 46899999999999999976543
No 125
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=26.14 E-value=46 Score=27.41 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHhCCcccC
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQK 261 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQK 261 (371)
..++|.+++..+||+++|....+
T Consensus 125 ~~~~~~~~~f~~~~~~~G~~~~~ 147 (162)
T 3kff_A 125 DLNSDIKEKFVKLCEEHGIIKEN 147 (162)
T ss_dssp CCCHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 36899999999999999987654
No 126
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=25.38 E-value=32 Score=30.64 Aligned_cols=21 Identities=14% Similarity=-0.056 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHHHhCCccc
Q 017477 240 FSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 240 FTqEQKEKMl~FAEKLGWRIQ 260 (371)
.++|.|+|.++.||+|||+..
T Consensus 14 ~s~~tr~rV~~aa~elgY~pn 34 (342)
T 1jx6_A 14 EFPEQRNLTNALSEAVRAQPV 34 (342)
T ss_dssp HCHHHHHHHHHHHHHHHSCCC
T ss_pred hcHHHHHHHHHHHHHhcCCCC
Confidence 469999999999999999764
No 127
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.47 E-value=50 Score=24.03 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.9
Q ss_pred cccCCCHHHHHHHHHHHHHhC
Q 017477 236 FRTKFSQSQKEKMFEFAERVG 256 (371)
Q Consensus 236 FRTKFTqEQKEKMl~FAEKLG 256 (371)
.|.+||+|.-++++++.++.|
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g 28 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMP 28 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHHHcC
Confidence 457899999999999999988
No 128
>3l0i_A DRRA, SIDM; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Legionella pneumophila}
Probab=24.41 E-value=13 Score=35.41 Aligned_cols=20 Identities=35% Similarity=0.801 Sum_probs=15.8
Q ss_pred HHHHHhccc------eeeecCCcCCC
Q 017477 266 LVHEFCNEV------VWMHNNKSTFA 285 (371)
Q Consensus 266 ~VqqFC~EI------VWMHNNKhtl~ 285 (371)
-|-||-.+| +||||-|--+.
T Consensus 283 gimqfikdvadptskiwmhntkalmn 308 (363)
T 3l0i_A 283 GIMQFIKDVADPTSKIWMHNTKALMN 308 (363)
T ss_dssp HHHHHHHHHSCTTCEETTEEHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhhhhHHHHh
Confidence 467899988 99999886443
No 129
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens}
Probab=24.34 E-value=56 Score=28.06 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHhCCccc
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQ 260 (371)
..++|.++++++||+++|....
T Consensus 137 ~l~~e~~~~f~~~~~~~G~~~~ 158 (193)
T 3qkg_A 137 QLRETLLQDFRVVAQGVGIPED 158 (193)
T ss_dssp CCCHHHHHHHHHHHHHTTCCST
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 4889999999999999998654
No 130
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.29 E-value=37 Score=25.54 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=14.5
Q ss_pred CccccccCCCCCCCCCCcccccccCc
Q 017477 92 GCGEFMPSPTATPSDPTSLKCAACGC 117 (371)
Q Consensus 92 GCGEFMPSGeeGt~dp~ALKCAACGC 117 (371)
.|--+|-.-+ .+++||.||+-
T Consensus 33 eC~~C~V~N~-----a~~~kC~ACet 53 (57)
T 2ebv_A 33 ECSVCCVSNN-----AEDNKCVSCMS 53 (57)
T ss_dssp CCSSSCCCCC-----SSCSBCSSSCC
T ss_pred eCCeeEccCc-----cCCceeeEcCC
Confidence 3666666543 45899999974
No 131
>1beb_A Beta-lactoglobulin; lipocalin, MILK WHEY protein, bovine, retinol-binding; 1.80A {Bos taurus} SCOP: b.60.1.1 PDB: 3nq3_A* 1b0o_A 1bsq_A 1gx8_A* 1gx9_A* 1gxa_A* 2gj5_A* 2r56_A* 3npo_A 1b8e_A* 3nq9_A* 3qzj_A* 3qzk_A* 3ueu_A* 3uev_A* 3uew_A* 3uex_A* 4dq3_A* 4dq4_A* 1qg5_A ...
Probab=24.15 E-value=29 Score=28.28 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcccCC
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQKR 262 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQK~ 262 (371)
..++|+++++++||+++|..+.+-
T Consensus 127 ~~~~~~~~~f~~~~~~~g~~~~~l 150 (162)
T 1beb_A 127 EVDDEALEKFDKALKALPMHIRLS 150 (162)
T ss_dssp SCCHHHHHHHHHHHTTSCCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHE
Confidence 579999999999999999887653
No 132
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=23.70 E-value=41 Score=27.66 Aligned_cols=21 Identities=10% Similarity=0.090 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHhCCcc
Q 017477 239 KFSQSQKEKMFEFAERVGWKM 259 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRI 259 (371)
..++|++++.++||+++|-..
T Consensus 119 ~~~~e~~~~f~~~~~~~G~~~ 139 (160)
T 3sao_A 119 EVSPTAMAIFRKLARERNYTD 139 (160)
T ss_dssp SCCHHHHHHHHHHHHTTTCCG
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 378999999999999999754
No 133
>1z24_A Insecticyanin A form; blue biliprotein, INS-A, chromophore binding., lipid binding protein; HET: BLV; 2.60A {Manduca sexta} SCOP: b.60.1.1
Probab=23.61 E-value=40 Score=28.63 Aligned_cols=22 Identities=14% Similarity=0.004 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHH--HhCCcccC
Q 017477 240 FSQSQKEKMFEFAE--RVGWKMQK 261 (371)
Q Consensus 240 FTqEQKEKMl~FAE--KLGWRIQK 261 (371)
.++|.+++++++|+ ++||.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~G~d~~~ 164 (189)
T 1z24_A 141 LEGNTKEVVDNVLKTFSHLIDASK 164 (189)
T ss_dssp CCTHHHHHHHHHHHTTTTTCCGGG
T ss_pred CCHHHHHHHHHHHhhhhcCCCHHH
Confidence 68999999999999 99997643
No 134
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=23.29 E-value=41 Score=24.60 Aligned_cols=31 Identities=29% Similarity=0.664 Sum_probs=20.9
Q ss_pred ccCccccccCCCCCCCCCCcccccccC--ccccccccC
Q 017477 90 LDGCGEFMPSPTATPSDPTSLKCAACG--CHRNFHRRE 125 (371)
Q Consensus 90 vDGCGEFMPSGeeGt~dp~ALKCAACG--CHRNFHRKE 125 (371)
=|=|++||-.- --..|+|..|+ ||+--+.+.
T Consensus 26 C~~C~~~l~Gl-----~~qg~~C~~C~~~~Hk~C~~~v 58 (65)
T 2enz_A 26 CEHCGTLLWGL-----ARQGLKCDACGMNVHHRCQTKV 58 (65)
T ss_dssp CSSSCCBCCCS-----SSCSEEESSSCCEECTTTTTTS
T ss_pred chhcChhheec-----CCcccccCCCCCccCHhHHhhC
Confidence 46799999642 12479999984 666655553
No 135
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=23.16 E-value=1.5e+02 Score=22.85 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=20.5
Q ss_pred CccccCCCHHHHHHHHHHHHHhC
Q 017477 234 KRFRTKFSQSQKEKMFEFAERVG 256 (371)
Q Consensus 234 KRFRTKFTqEQKEKMl~FAEKLG 256 (371)
...|.+||+|.-+++++.-++.|
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G 37 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK 37 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS
T ss_pred cccCCCcCHHHHHHHHHHHHHhC
Confidence 45678999999999999999988
No 136
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=23.08 E-value=41 Score=27.30 Aligned_cols=19 Identities=26% Similarity=0.791 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhCCccc
Q 017477 242 QSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 242 qEQKEKMl~FAEKLGWRIQ 260 (371)
..|++.+.+||++.||.+-
T Consensus 24 ~~Q~~~l~~~a~~~g~~~~ 42 (138)
T 3bvp_A 24 DEQIDRLTKYAEAMGWQVS 42 (138)
T ss_dssp HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 5699999999999999874
No 137
>1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} SCOP: a.253.1.1
Probab=22.97 E-value=48 Score=28.04 Aligned_cols=30 Identities=33% Similarity=0.590 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhCCcc-cCCCHHHHHHHh
Q 017477 242 QSQKEKMFEFAERVGWKM-QKRDDDLVHEFC 271 (371)
Q Consensus 242 qEQKEKMl~FAEKLGWRI-QK~DE~~VqqFC 271 (371)
++-=++.++|++.+|.|| .|.|++++....
T Consensus 76 ~~Hy~ri~~~l~d~e~Ki~kkl~~ev~~~i~ 106 (116)
T 1yoz_A 76 SIHFERLKEFAESKGFKIEKKLDPEVINEIA 106 (116)
T ss_dssp HHHHHHHHHHHHTTC---CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHhHHH
Confidence 455689999999999999 778887776654
No 138
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=22.94 E-value=5.8 Score=25.69 Aligned_cols=9 Identities=67% Similarity=1.165 Sum_probs=7.2
Q ss_pred CccccCCCH
Q 017477 234 KRFRTKFSQ 242 (371)
Q Consensus 234 KRFRTKFTq 242 (371)
||||.||-.
T Consensus 4 krfrkkfkk 12 (27)
T 2ket_A 4 KRFRKKFKK 12 (27)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899998843
No 139
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=22.30 E-value=40 Score=23.25 Aligned_cols=26 Identities=27% Similarity=0.792 Sum_probs=17.5
Q ss_pred ccCccccccCCCCCCCCCCcccccccC--cccccccc
Q 017477 90 LDGCGEFMPSPTATPSDPTSLKCAACG--CHRNFHRR 124 (371)
Q Consensus 90 vDGCGEFMPSGeeGt~dp~ALKCAACG--CHRNFHRK 124 (371)
=|=|++||- ..|+|..|+ ||+--+.+
T Consensus 17 C~~C~~~l~---------qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 17 CDICQKFLL---------NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp CTTSSSEEC---------SEEECTTTTCCBCSTTSSS
T ss_pred CCCcccccc---------cCCEeCCCCCeEChhHHhh
Confidence 356999986 269999985 45444443
No 140
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=22.23 E-value=60 Score=23.88 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=17.8
Q ss_pred ccCCCHHHHHHHHHHHHHh
Q 017477 237 RTKFSQSQKEKMFEFAERV 255 (371)
Q Consensus 237 RTKFTqEQKEKMl~FAEKL 255 (371)
||+||.|-=+.+++|..+.
T Consensus 2 R~~FT~edD~~L~~~v~~~ 20 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKEN 20 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999876
No 141
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=22.06 E-value=43 Score=27.90 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhCCccc
Q 017477 242 QSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 242 qEQKEKMl~FAEKLGWRIQ 260 (371)
..|++.+.+||++.||.|-
T Consensus 25 ~~Q~~~l~~~a~~~g~~i~ 43 (167)
T 3guv_A 25 EAQKSRMKAFAIYNDYEIV 43 (167)
T ss_dssp HHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCCEEE
Confidence 5799999999999999863
No 142
>3n6o_A Guanine nucleotide exchange factor; phosphatidylinositol-4-phosphate, membrane, RAB, LCV, P rabgef, signaling protein; 2.50A {Legionella pneumophila} PDB: 3l0m_A
Probab=21.91 E-value=15 Score=34.95 Aligned_cols=19 Identities=37% Similarity=0.849 Sum_probs=15.2
Q ss_pred HHHHHhccc------eeeecCCcCC
Q 017477 266 LVHEFCNEV------VWMHNNKSTF 284 (371)
Q Consensus 266 ~VqqFC~EI------VWMHNNKhtl 284 (371)
-+-||-.+| +||||-|--+
T Consensus 134 gimqfikdvadptskiwmhntkalm 158 (311)
T 3n6o_A 134 GIMQFIKDVADPTSKIWMHNTKALM 158 (311)
T ss_dssp HHHHHHHHHSCTTCEETTEEHHHHH
T ss_pred HHHHHHHHhcCcchhHHHhhhHHHH
Confidence 467898888 9999988544
No 143
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=21.56 E-value=33 Score=30.12 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=17.4
Q ss_pred CCccccCCCHHHHHHHHHHHHH
Q 017477 233 RKRFRTKFSQSQKEKMFEFAER 254 (371)
Q Consensus 233 KKRFRTKFTqEQKEKMl~FAEK 254 (371)
.|.+|-+||.|+|+.+..|+++
T Consensus 17 ~~~~~r~yt~EfK~aAv~l~~~ 38 (155)
T 2ao9_A 17 LDELKQKLTAKQIQAAYLLVEN 38 (155)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHH
T ss_pred hhHhhhhcCHHHHHHHHHHHHc
Confidence 4667888999999999766544
No 144
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.54 E-value=45 Score=24.50 Aligned_cols=41 Identities=5% Similarity=0.122 Sum_probs=26.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc--------eeeecCCc
Q 017477 238 TKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV--------VWMHNNKS 282 (371)
Q Consensus 238 TKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI--------VWMHNNKh 282 (371)
..++.+|.+.+..+-+ +-+.-+..+..+.+.++ ||+-|...
T Consensus 8 ~~p~~~Ql~~Le~~F~----~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRa 56 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYA----LNAQPSAEELSKIADSVNLPLDVVKKWFEKMQA 56 (64)
T ss_dssp CCCCHHHHHHHHHHHT----TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHh----cCCCcCHHHHHHHHHHhCcChhhcCcchhcccC
Confidence 4456788777655443 34456666666666666 99988765
No 145
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=21.46 E-value=64 Score=26.05 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=18.0
Q ss_pred cccCCCHHHHHHHHHHHHH-hCCc
Q 017477 236 FRTKFSQSQKEKMFEFAER-VGWK 258 (371)
Q Consensus 236 FRTKFTqEQKEKMl~FAEK-LGWR 258 (371)
|=+++|.|||+.+.+|++. ..|.
T Consensus 78 ~P~~Ls~~q~~~l~~l~~~~~~~~ 101 (109)
T 3i38_A 78 MPTKPDEKARELWQQLAAAEASFD 101 (109)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCHHHHHHHHHHHhhccccC
Confidence 3356899999999999997 4443
No 146
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=21.05 E-value=61 Score=26.90 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHhCCc
Q 017477 239 KFSQSQKEKMFEFAERVGWK 258 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWR 258 (371)
..++|+|||..+||+.+|-.
T Consensus 123 ~~s~e~~e~F~~~~~~~Gl~ 142 (157)
T 3fiq_A 123 DLNKAQKQELRKLAEEYNIP 142 (157)
T ss_dssp CCCHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHcCCC
Confidence 47899999999999999964
No 147
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=20.79 E-value=76 Score=22.12 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=18.9
Q ss_pred ccCCCHHHHHHHHHHHHHhC
Q 017477 237 RTKFSQSQKEKMFEFAERVG 256 (371)
Q Consensus 237 RTKFTqEQKEKMl~FAEKLG 256 (371)
|.+||+|.-++++++.++.|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G 21 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYG 21 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHC
Confidence 67999999999999999998
No 148
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris}
Probab=20.74 E-value=42 Score=28.22 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHhCCccc
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQ 260 (371)
..++|.++|..+||+++|....
T Consensus 125 ~~~~e~~~~f~~~~~~~Gl~~~ 146 (170)
T 3l4r_A 125 SRQQDFLPAFESVCEDIGLHKD 146 (170)
T ss_dssp GGTTTTHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 3689999999999999998654
No 149
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=20.56 E-value=55 Score=25.17 Aligned_cols=37 Identities=8% Similarity=0.155 Sum_probs=23.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCcccCCCHHHHHHHhccc
Q 017477 237 RTKFSQSQKEKMFEFAERVGWKMQKRDDDLVHEFCNEV 274 (371)
Q Consensus 237 RTKFTqEQKEKMl~FAEKLGWRIQK~DE~~VqqFC~EI 274 (371)
|.+||.|+|.+++.....-|+..... ..-|.+.|.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~-g~s~~~va~~~ 40 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQ-WATICSIAPKI 40 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccc-cccHHHHHHHH
Confidence 45899999999998876555211110 12566777765
No 150
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A
Probab=20.17 E-value=44 Score=27.39 Aligned_cols=22 Identities=18% Similarity=0.065 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHhCCccc
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQ 260 (371)
..++|+++++++||+++|....
T Consensus 117 ~~~~e~~~~f~~~~~~~G~~~~ 138 (162)
T 1xki_A 117 KNNLEALEDFEKAAGARGLSTE 138 (162)
T ss_dssp SCCCCCHHHHHHHHHHTTCTTS
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 5789999999999999998654
No 151
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=20.15 E-value=72 Score=25.95 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHhCCccc
Q 017477 239 KFSQSQKEKMFEFAERVGWKMQ 260 (371)
Q Consensus 239 KFTqEQKEKMl~FAEKLGWRIQ 260 (371)
..++|++|+.++||+++|....
T Consensus 124 ~~~~e~~~~f~~~~~~~G~~~~ 145 (160)
T 2hlv_A 124 NVEDEDLEKFWKLTEDKGIDKK 145 (160)
T ss_dssp SCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 4799999999999999998754
No 152
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=20.14 E-value=81 Score=25.99 Aligned_cols=26 Identities=27% Similarity=0.532 Sum_probs=22.8
Q ss_pred CCCCccccCCCHHHHHHHHHHHHHhC
Q 017477 231 GGRKRFRTKFSQSQKEKMFEFAERVG 256 (371)
Q Consensus 231 ~~KKRFRTKFTqEQKEKMl~FAEKLG 256 (371)
..++|-|.+||.|.-+.+++.-++.|
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G 32 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLG 32 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhC
Confidence 34688899999999999999999998
No 153
>1exs_A Beta-lactoglobulin; lipocalin fold, lipid-binding protein; 2.39A {Sus scrofa} SCOP: b.60.1.1
Probab=20.13 E-value=46 Score=27.10 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=19.8
Q ss_pred cc-CCCHHHHHHHHHHHHHhCCcc
Q 017477 237 RT-KFSQSQKEKMFEFAERVGWKM 259 (371)
Q Consensus 237 RT-KFTqEQKEKMl~FAEKLGWRI 259 (371)
|| ..++|++++.++||+++|..+
T Consensus 124 R~~~~~~e~~~~f~~~~~~~G~~~ 147 (160)
T 1exs_A 124 RTLEVDDQIREKFEDALKTLSVPM 147 (160)
T ss_dssp SSSCCCHHHHHHHHHHHTTSSSCE
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCc
Confidence 44 478999999999999999765
Done!