Query 017478
Match_columns 371
No_of_seqs 188 out of 399
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 1E-28 3.5E-33 190.8 7.0 60 30-90 1-60 (64)
2 2yus_A SWI/SNF-related matrix- 86.8 2.1 7.1E-05 33.4 7.0 46 35-86 17-62 (79)
3 2cu7_A KIAA1915 protein; nucle 84.4 2.6 9.1E-05 31.6 6.3 50 34-89 7-56 (72)
4 2yum_A ZZZ3 protein, zinc fing 84.1 1.8 6.2E-05 32.5 5.3 54 34-90 6-62 (75)
5 2hzd_A Transcriptional enhance 83.7 0.67 2.3E-05 37.4 2.9 56 33-89 3-74 (82)
6 2xag_B REST corepressor 1; ami 80.3 3 0.0001 42.7 6.8 51 34-90 378-428 (482)
7 2iw5_B Protein corest, REST co 79.7 2.9 9.9E-05 39.4 6.0 55 30-90 127-181 (235)
8 2cqq_A RSGI RUH-037, DNAJ homo 76.6 6.5 0.00022 30.3 6.2 48 36-89 8-58 (72)
9 1x41_A Transcriptional adaptor 76.1 9 0.00031 27.8 6.6 51 33-88 5-55 (60)
10 3sjm_A Telomeric repeat-bindin 63.1 16 0.00055 27.2 5.6 50 30-82 5-54 (64)
11 2kes_A Synphilin-1; synphillin 59.5 8.5 0.00029 28.2 3.4 23 137-159 15-41 (48)
12 2cqr_A RSGI RUH-043, DNAJ homo 58.7 22 0.00077 27.3 5.9 51 36-89 18-69 (73)
13 2ba2_A D12_ORF131, hypothetica 56.5 29 0.00098 28.3 6.3 41 128-171 34-74 (85)
14 2elk_A SPCC24B10.08C protein; 53.9 14 0.00048 26.7 3.9 48 36-87 9-56 (58)
15 1ity_A TRF1; helix-turn-helix, 48.1 35 0.0012 25.1 5.3 52 32-86 6-57 (69)
16 2eqr_A N-COR1, N-COR, nuclear 45.7 18 0.00062 26.4 3.4 46 31-82 7-52 (61)
17 2yqk_A Arginine-glutamic acid 45.6 20 0.00068 26.5 3.6 45 33-82 6-50 (63)
18 1guu_A C-MYB, MYB proto-oncoge 45.1 49 0.0017 22.8 5.4 46 36-86 3-48 (52)
19 2d9a_A B-MYB, MYB-related prot 44.5 73 0.0025 22.6 6.4 49 33-86 5-53 (60)
20 2li6_A SWI/SNF chromatin-remod 35.2 6.3 0.00021 32.3 -0.6 45 41-88 49-97 (116)
21 1wgx_A KIAA1903 protein; MYB D 35.1 80 0.0027 24.6 5.7 46 38-86 10-56 (73)
22 2crg_A Metastasis associated p 34.6 36 0.0012 25.7 3.5 48 31-83 3-50 (70)
23 4eef_G F-HB80.4, designed hema 34.2 14 0.00048 29.3 1.3 53 29-84 13-66 (74)
24 2rq5_A Protein jumonji; develo 33.8 15 0.0005 30.9 1.4 47 41-88 42-95 (121)
25 2lm1_A Lysine-specific demethy 33.2 14 0.00049 29.4 1.2 45 41-86 44-94 (107)
26 2cjj_A Radialis; plant develop 32.6 74 0.0025 25.5 5.3 48 36-88 8-58 (93)
27 1gvd_A MYB proto-oncogene prot 32.0 1E+02 0.0036 21.1 5.4 46 36-86 3-48 (52)
28 1c20_A DEAD ringer protein; DN 29.2 18 0.00063 29.9 1.2 46 41-87 52-104 (128)
29 2dim_A Cell division cycle 5-l 29.1 1.7E+02 0.0057 21.4 6.4 49 33-86 6-54 (70)
30 2cxy_A BAF250B subunit, HBAF25 29.1 18 0.00062 29.9 1.2 45 41-86 51-101 (125)
31 2eqy_A RBP2 like, jumonji, at 28.8 21 0.00071 29.6 1.5 46 41-87 42-93 (122)
32 1kkx_A Transcription regulator 28.4 14 0.00049 30.8 0.4 45 41-88 48-96 (123)
33 2jxj_A Histone demethylase jar 28.1 19 0.00066 28.1 1.1 45 41-86 36-86 (96)
34 2jrz_A Histone demethylase jar 27.2 20 0.00068 29.4 1.1 45 41-86 40-90 (117)
35 1qgp_A Protein (double strande 23.1 96 0.0033 23.3 4.2 45 39-86 11-55 (77)
36 1nkd_A ROP; atomic resolution 22.4 45 0.0015 26.0 2.1 25 136-160 37-62 (65)
37 2kk0_A AT-rich interactive dom 21.5 35 0.0012 29.1 1.5 46 41-87 64-116 (145)
38 1ig6_A MRF-2, modulator recogn 20.8 15 0.00053 29.4 -0.8 46 41-87 33-85 (107)
39 2aje_A Telomere repeat-binding 20.5 1.8E+02 0.0062 23.8 5.6 50 31-83 8-59 (105)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=1e-28 Score=190.85 Aligned_cols=60 Identities=48% Similarity=0.796 Sum_probs=57.5
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcCC
Q 017478 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90 (371)
Q Consensus 30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~~ 90 (371)
++.+|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+.+
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999 7999999999999999999999999999999875
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=86.81 E-value=2.1 Score=33.44 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=38.4
Q ss_pred CCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhh
Q 017478 35 PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (371)
Q Consensus 35 pRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKY 86 (371)
.+-.||+|=+++|++||+..|+ .=+.|-+.|+ +=|..+++.|-++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence 4678999999999999999993 2357777764 78999999998877
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=84.40 E-value=2.6 Score=31.61 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=40.2
Q ss_pred CCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcC
Q 017478 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89 (371)
Q Consensus 34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~ 89 (371)
..+-.||+|=++.|+++|..+|- .=+.|-+. ++|=|-.+|+.|-++|-..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 45668999999999999999992 34566665 4788999999998888543
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.12 E-value=1.8 Score=32.54 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=40.7
Q ss_pred CCCcccCHHHHHHHHHHHHhhCCCCCCChh---HHHhhhCCCCccHHHHHHhhhhhhcCC
Q 017478 34 KPRLRWTVELHERFVDAVTQLGGPDKATPK---TIMRVMGVKGLTLYHLKSHLQKFRLGK 90 (371)
Q Consensus 34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK---~IL~lM~V~gLT~~hVkSHLQKYRl~~ 90 (371)
..+=.||+|=+++|+++|..+| .+...|. .|-+.| +|=|-.+|+.|-++|-...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 3455899999999999999999 2222233 455554 6889999999999996543
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=83.75 E-value=0.67 Score=37.41 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=35.0
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCChhH----------------HHhhhCCCCccHHHHHHhhhhhhcC
Q 017478 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKT----------------IMRVMGVKGLTLYHLKSHLQKFRLG 89 (371)
Q Consensus 33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~----------------IL~lM~V~gLT~~hVkSHLQKYRl~ 89 (371)
.+..=+|.++|-..|++|++..--....+-+- |...-| .-=|+.+|.||||.-|..
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHH
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHH
Confidence 34556899999999999998775111222110 111111 334788999999977654
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=80.29 E-value=3 Score=42.73 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=42.9
Q ss_pred CCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcCC
Q 017478 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90 (371)
Q Consensus 34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~~ 90 (371)
+..-+||.|=|..|++||.+.|- .=+.|-+.++-. |..+|++|.++||...
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHHHHHh
Confidence 55789999999999999999992 456788886654 8999999999998764
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=79.67 E-value=2.9 Score=39.41 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=44.7
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhcCC
Q 017478 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90 (371)
Q Consensus 30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl~~ 90 (371)
.+..+..-+||+|=++.|++|+...| . .=..|-+. |++=|..+|++|-.+||...
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYG--K--DW~~IAk~--VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYG--R--DFQAISDV--IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHS--S--CHHHHHHH--HSSCCHHHHHHHHHHTTTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHC--c--CHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 34456778999999999999999999 2 25577776 56789999999999998543
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=76.59 E-value=6.5 Score=30.28 Aligned_cols=48 Identities=17% Similarity=0.361 Sum_probs=38.0
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhH---HHhhhCCCCccHHHHHHhhhhhhcC
Q 017478 36 RLRWTVELHERFVDAVTQLGGPDKATPKT---IMRVMGVKGLTLYHLKSHLQKFRLG 89 (371)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~gLT~~hVkSHLQKYRl~ 89 (371)
+-.||.|=+++|+.|+..+++ -||.+ |-+.| |=|..+|+.|-+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 447999999999999999983 35664 66666 56999999998877544
No 9
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=76.11 E-value=9 Score=27.77 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=39.3
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhhc
Q 017478 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88 (371)
Q Consensus 33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYRl 88 (371)
.-.|-.||+|=.+++++||..+| .. .=+.|-+.| +|=|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~~--~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-FG--NWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-TT--CHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-cC--cHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 44566899999999999999999 21 234676666 67899999999887743
No 10
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=63.07 E-value=16 Score=27.17 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=35.2
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHh
Q 017478 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82 (371)
Q Consensus 30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSH 82 (371)
++..+.|-.||+|=-++.+++|++.|- . .=+.|.+.+...|=|-.+++-+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHH
Confidence 455667788999999999999999992 1 2347888777777777777654
No 11
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=59.55 E-value=8.5 Score=28.19 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=17.8
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHH
Q 017478 137 EVQRRLHEQ----LEVQRHLQLRIEAQ 159 (371)
Q Consensus 137 EVQrrLHEQ----LEVQRhLQLRIEAQ 159 (371)
.+-|+|+|| +.+|.+||.-+|+|
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~ 41 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQ 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355778887 45899999888887
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=58.68 E-value=22 Score=27.34 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=39.2
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhh-CCCCccHHHHHHhhhhhhcC
Q 017478 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVM-GVKGLTLYHLKSHLQKFRLG 89 (371)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~V~gLT~~hVkSHLQKYRl~ 89 (371)
+-.||.|=...|++||..+|. -+|..--++= -|+|=|-.+|+.|-+.+...
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 346999999999999999992 2677544332 35799999999998876543
No 13
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=56.46 E-value=29 Score=28.32 Aligned_cols=41 Identities=32% Similarity=0.388 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 017478 128 MVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKAC 171 (371)
Q Consensus 128 i~EALrmQmEVQrrLHEQLEVQRhLQLRIEAQGKYLQsILEKAq 171 (371)
+.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+--+
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL~ 74 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEALQ 74 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666655333444554 7888889999999999987543
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=53.91 E-value=14 Score=26.67 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=35.5
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhhh
Q 017478 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87 (371)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKYR 87 (371)
+-.||+|=++++++||++.| .. .=+.|-+.|+. +=|..+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G-~~--~W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG-LG--NWADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT-TT--CHHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHC-cC--CHHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 44699999999999999999 21 23456666542 568888888877663
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=48.11 E-value=35 Score=25.13 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=40.1
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhh
Q 017478 32 DPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (371)
Q Consensus 32 ~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKY 86 (371)
.++.|-.||+|=-+..+++|+++| .. .=+.|.+.|+..|=|-.+++-+-..|
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G-~~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYG-EG--NWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHC-SS--CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-CC--cHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 456788999999999999999999 21 23578888765577888888775555
No 16
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.70 E-value=18 Score=26.40 Aligned_cols=46 Identities=17% Similarity=0.041 Sum_probs=34.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHh
Q 017478 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82 (371)
Q Consensus 31 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSH 82 (371)
..++..-.||+|=|+.|++|+.+.| .+ =..|-.. |++=|..+|..|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~g--k~--w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHP--KN--FGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHST--TC--HHHHHHH--CTTSCHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhC--CC--HHHHHHH--cCCCCHHHHHHH
Confidence 3556778999999999999999998 22 3456544 567788887765
No 17
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.56 E-value=20 Score=26.52 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=30.8
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHh
Q 017478 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82 (371)
Q Consensus 33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSH 82 (371)
...+-.||+|=|+.|.+|+...| .. =..|-+.| |+.=|..+|..+
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yG--Kd--f~~I~~~~-v~~Kt~~~~v~f 50 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYG--KN--FFRIRKEL-LPNKETGELITF 50 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTC--SC--HHHHHHHS-CTTSCHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhC--cc--HHHHHHHH-cCCCcHHHHHHH
Confidence 34456899999999999999999 22 23444311 456677776554
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=45.13 E-value=49 Score=22.79 Aligned_cols=46 Identities=28% Similarity=0.302 Sum_probs=35.1
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhh
Q 017478 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (371)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKY 86 (371)
|-.||+|=.++++++|.++|- ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 1334666654 577888888876655
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=44.52 E-value=73 Score=22.58 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=36.9
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhh
Q 017478 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (371)
Q Consensus 33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKY 86 (371)
...|-.||+|=.++++++|.++|- . .=..|-+.| +|=|-.+++.|-.+|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQ-Q--DWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCT-T--CHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 456778999999999999999992 1 224566664 577888888876655
No 20
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=35.22 E-value=6.3 Score=32.31 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----HHHhhhCCCCccHHHHHHhhhhhhc
Q 017478 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLTLYHLKSHLQKFRL 88 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~gLT~~hVkSHLQKYRl 88 (371)
-+|+..|.. |..+||.++.+-+ .|.+.|+++. -..|+.|-.||=+
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 578888875 7899998876543 6889999987 5678888777743
No 21
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=35.06 E-value=80 Score=24.59 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCChhHHHhh-hCCCCccHHHHHHhhhhh
Q 017478 38 RWTVELHERFVDAVTQLGGPDKATPKTIMRV-MGVKGLTLYHLKSHLQKF 86 (371)
Q Consensus 38 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l-M~V~gLT~~hVkSHLQKY 86 (371)
.||.+=+.+|.+|+..++ +.+|-+--++ .-|+|=|.+.|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 599999999999999887 3477765443 236888999998876544
No 22
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=34.56 E-value=36 Score=25.74 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=34.5
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhh
Q 017478 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83 (371)
Q Consensus 31 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHL 83 (371)
+.++..-.||+|=|+.|.+|+...| .. =..|-+. -|+.-|..+|..+-
T Consensus 3 ~~r~~~~~WT~eE~~~Fe~~l~~yG--Kd--f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 3 SGSSGMEEWSASEACLFEEALEKYG--KD--FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHTC--SC--HHHHHHT-TCSSSCHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHHHHHHHHhC--cc--HHHHHHH-HcCCCCHHHHHHHH
Confidence 3467777999999999999999999 22 3344431 15677877777664
No 23
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=34.16 E-value=14 Score=29.32 Aligned_cols=53 Identities=25% Similarity=0.288 Sum_probs=34.5
Q ss_pred ecCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhh-CCCCccHHHHHHhhh
Q 017478 29 LTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVM-GVKGLTLYHLKSHLQ 84 (371)
Q Consensus 29 ls~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~V~gLT~~hVkSHLQ 84 (371)
++..+-.--.||.+=.+.|..|+.... +-||.+--++- -|+|=|.+.|+.|-|
T Consensus 13 m~s~~~ss~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 13 MASTRGSGRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---------CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred eccCCCCCCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 333333445699999999999998875 45676544432 267999999999965
No 24
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=33.84 E-value=15 Score=30.88 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----HHHhhhCCCCcc---HHHHHHhhhhhhc
Q 017478 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT---LYHLKSHLQKFRL 88 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~gLT---~~hVkSHLQKYRl 88 (371)
-+|+..|. +|..+||.++.+-+ .|.+.|+++... ...++.|-.||=+
T Consensus 42 lDL~~Ly~-~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 42 LDLACFFR-LINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp CCHHHHHH-HHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred ccHHHHHH-HHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 36787776 67799998876654 588889987543 4667777776643
No 25
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=33.24 E-value=14 Score=29.41 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----HHHhhhCCCCcc--HHHHHHhhhhh
Q 017478 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKF 86 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~gLT--~~hVkSHLQKY 86 (371)
-+||.-|.. |..+||.++.+-+ .|.+.|+++.-| -..|+.|-.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 579999986 6799998876543 588899997532 34566666665
No 26
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=32.59 E-value=74 Score=25.51 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=37.0
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhH---HHhhhCCCCccHHHHHHhhhhhhc
Q 017478 36 RLRWTVELHERFVDAVTQLGGPDKATPKT---IMRVMGVKGLTLYHLKSHLQKFRL 88 (371)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~gLT~~hVkSHLQKYRl 88 (371)
.-.||.|=.+.|++|+..+|- + +|.+ |-+. |+|=|-.+|+.|-+++..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~-~--~~~rW~~IA~~--vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDK-D--TPDRWANVARA--VEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCT-T--CTTHHHHHHHH--STTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-C--CCchHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 346999999999999999982 2 5554 4444 478999999999887643
No 27
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=32.03 E-value=1e+02 Score=21.12 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=34.0
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhh
Q 017478 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (371)
Q Consensus 36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKY 86 (371)
+-.||+|=.++++++|.+.|- . .=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 1 123555554 577888888876655
No 28
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=29.18 E-value=18 Score=29.93 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCc-c--HHHHHHhhhhhh
Q 017478 41 VELHERFVDAVTQLGGPDKATP----KTIMRVMGVKGL-T--LYHLKSHLQKFR 87 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~V~gL-T--~~hVkSHLQKYR 87 (371)
-+||..|.. |..+||.++.+- +.|.+.||++.- | ...|+.|-.||=
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L 104 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYL 104 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHT
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 478999886 779999887654 358889998652 2 467788777763
No 29
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.12 E-value=1.7e+02 Score=21.36 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=37.7
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhh
Q 017478 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (371)
Q Consensus 33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKY 86 (371)
...|=.||+|=.++++++|.++| . ..=+.|-+.|+ |=|-.+++-|-..|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G-~--~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYG-K--NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTC-S--SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34566899999999999999999 1 12356777764 77888888877665
No 30
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=29.11 E-value=18 Score=29.89 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----HHHhhhCCCCcc--HHHHHHhhhhh
Q 017478 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKF 86 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~gLT--~~hVkSHLQKY 86 (371)
-+||+.|.. |..+||.++.+-+ .|.+.|+++.-| -..|+.|-.||
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478988885 7799998866533 588999998642 34566665555
No 31
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=28.77 E-value=21 Score=29.56 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----HHHhhhCCCCcc--HHHHHHhhhhhh
Q 017478 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKFR 87 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~gLT--~~hVkSHLQKYR 87 (371)
-+|++.|.. |..+||.++.+-+ .|.+.|+++.-+ ..+|+.|-.||=
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 478988885 7899998875543 588899996533 246677666663
No 32
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=28.41 E-value=14 Score=30.81 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----HHHhhhCCCCccHHHHHHhhhhhhc
Q 017478 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLTLYHLKSHLQKFRL 88 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~gLT~~hVkSHLQKYRl 88 (371)
-+|+..|.. |..+||.++.+-+ .|.+.|+++. -..|+.|-.||=+
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 96 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence 478888875 7899999887753 5888999987 6778887777644
No 33
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=28.07 E-value=19 Score=28.11 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----HHHhhhCCCCcc--HHHHHHhhhhh
Q 017478 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKF 86 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~gLT--~~hVkSHLQKY 86 (371)
-+||..|.. |..+||.++.+-+ .|.+.|+++.-+ ..+|+.|-.||
T Consensus 36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 478888875 7799998876543 588899986532 34566665555
No 34
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=27.20 E-value=20 Score=29.39 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----HHHhhhCCCCcc--HHHHHHhhhhh
Q 017478 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKF 86 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~gLT--~~hVkSHLQKY 86 (371)
-+||+.|.. |..+||.++.+-+ .|.+.|+++.-| ..+|+.|-.||
T Consensus 40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478988885 7799998866543 588899986432 35677776666
No 35
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.06 E-value=96 Score=23.35 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=35.6
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCccHHHHHHhhhhh
Q 017478 39 WTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (371)
Q Consensus 39 WT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~gLT~~hVkSHLQKY 86 (371)
=|+++.++-++++.+.|--+..|.+.|-+.+|| +...|..||.+-
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L 55 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 367888899999999993356899999999996 566777777655
No 36
>1nkd_A ROP; atomic resolution structure alpha-helix bundle, transcription regulation; 1.09A {Escherichia coli} SCOP: a.30.1.1 PDB: 1rpo_A 1rop_A 1rpr_A 2ghy_A 1b6q_A 1gmg_A 2ijk_A 1gto_A 2ijj_A 2ijh_A 2iji_A 3k79_A 1qx8_A 1f4n_A 1f4m_A
Probab=22.39 E-value=45 Score=25.95 Aligned_cols=25 Identities=20% Similarity=0.411 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHh
Q 017478 136 MEVQRRLHEQLE-VQRHLQLRIEAQG 160 (371)
Q Consensus 136 mEVQrrLHEQLE-VQRhLQLRIEAQG 160 (371)
...=-+|||+-| ++++|+.|+++.+
T Consensus 37 A~~CE~LHe~AE~L~~~l~~r~~~~~ 62 (65)
T 1nkd_A 37 ADICESLHDHADELYRSCLARFGDDG 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334468999976 8999999998754
No 37
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.48 E-value=35 Score=29.07 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----HHHhhhCCCCc---cHHHHHHhhhhhh
Q 017478 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGL---TLYHLKSHLQKFR 87 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~gL---T~~hVkSHLQKYR 87 (371)
-+|+..|.. |..+||.++.+-+ .|.+.|+++.- ..+.|+.|-.||=
T Consensus 64 vDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L 116 (145)
T 2kk0_A 64 LDLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYL 116 (145)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHH
Confidence 478888886 7799998876543 58889998652 1466787777763
No 38
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=20.78 E-value=15 Score=29.36 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----HHHhhhCCCCc-c--HHHHHHhhhhhh
Q 017478 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGL-T--LYHLKSHLQKFR 87 (371)
Q Consensus 41 ~ELH~rFV~AV~qLGG~dkAtPK----~IL~lM~V~gL-T--~~hVkSHLQKYR 87 (371)
-+|+..|.. |..+||.++.+-+ .|.+.|+++.- | -.+|++|-.||=
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L 85 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLI 85 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 578988885 7799998876643 58889998642 1 256777777763
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=20.51 E-value=1.8e+02 Score=23.83 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=37.8
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhC--CCCccHHHHHHhh
Q 017478 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG--VKGLTLYHLKSHL 83 (371)
Q Consensus 31 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~--V~gLT~~hVkSHL 83 (371)
..++.|-.||+|=-+..+++|+++|. . .=+.|++.+. .+|=|--+||.+-
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdrW 59 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDKW 59 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHHH
Confidence 45788999999999999999999993 1 2346777552 3777888888653
Done!