Query 017479
Match_columns 371
No_of_seqs 185 out of 696
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:05:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 2.7E-34 9.1E-39 228.7 5.8 75 179-253 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 3.1E-34 1.1E-38 229.3 3.9 75 179-253 4-78 (78)
3 2rpr_A Flywch-type zinc finger 46.0 9.8 0.00034 29.4 2.1 47 193-252 25-74 (87)
4 3a2a_A Voltage-gated hydrogen 18.5 20 0.00067 27.3 -0.6 13 345-357 45-57 (58)
5 3vmx_A Voltage-gated hydrogen 17.6 23 0.0008 26.1 -0.3 10 345-354 38-47 (48)
6 1cz6_A Protein (androctonin); 17.1 33 0.0011 22.2 0.3 8 214-221 16-23 (26)
7 1xiw_B T-cell surface glycopro 14.4 32 0.0011 26.6 -0.4 49 193-249 17-75 (79)
8 1xiw_A T-cell surface glycopro 7.9 84 0.0029 26.2 0.0 29 192-220 32-79 (105)
9 3kp1_A D-ornithine aminomutase 6.5 1.6E+02 0.0054 32.0 1.2 37 194-233 30-71 (763)
10 1odh_A MGCM1; transcription fa 5.4 3.7E+02 0.013 24.3 2.8 17 238-254 143-159 (174)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=2.7e-34 Score=228.70 Aligned_cols=75 Identities=60% Similarity=1.056 Sum_probs=72.5
Q ss_pred ceeEEEeccccCCCCCcchhhccCcccccCCCCCccccccccCCCcccchhhhccCCCCEEEEEEecccCCCCCC
Q 017479 179 PRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPI 253 (371)
Q Consensus 179 ~r~~~~T~sevd~ldDGY~WRKYGQK~IKgsp~pRsYYRCt~~gC~AkKqVQRs~dDp~i~~tTY~G~HtH~~P~ 253 (371)
.|++|.|.++++.++|||+|||||||.|||++|||+||||++++|+|+|+|||+.+||.+++|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999884
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=3.1e-34 Score=229.29 Aligned_cols=75 Identities=61% Similarity=1.109 Sum_probs=69.4
Q ss_pred ceeEEEeccccCCCCCcchhhccCcccccCCCCCccccccccCCCcccchhhhccCCCCEEEEEEecccCCCCCC
Q 017479 179 PRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHPSPI 253 (371)
Q Consensus 179 ~r~~~~T~sevd~ldDGY~WRKYGQK~IKgsp~pRsYYRCt~~gC~AkKqVQRs~dDp~i~~tTY~G~HtH~~P~ 253 (371)
.+++|.|.++++.++|||+|||||||.|||++|||+||||++++|+|+|+|||+.+||.+++|||+|+|||+.|.
T Consensus 4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999884
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=45.95 E-value=9.8 Score=29.35 Aligned_cols=47 Identities=17% Similarity=0.409 Sum_probs=29.9
Q ss_pred CCcchhhccCcccccCCCCCcccccccc---CCCcccchhhhccCCCCEEEEEEecccCCCCC
Q 017479 193 DDGYRWRKYGQKAVKNSPHPRSYYRCTS---AGCGVKKRVERSSEDPTIVVTTYEGQHIHPSP 252 (371)
Q Consensus 193 dDGY~WRKYGQK~IKgsp~pRsYYRCt~---~gC~AkKqVQRs~dDp~i~~tTY~G~HtH~~P 252 (371)
-|||...+--+ ...+.|.+|+. .+|.|+=.... + . +.-.+.|+|++.
T Consensus 25 ~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~--~---~~~~~~HnH~p~ 74 (87)
T 2rpr_A 25 HESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--H--R---IMVMRSHCHQPD 74 (87)
T ss_dssp ETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--T--E---EEECSCCSSCCC
T ss_pred ECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--C--C---EECCCCcCCCCc
Confidence 58887664221 12468999996 58999744432 2 1 235688999743
No 4
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=18.55 E-value=20 Score=27.34 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=6.1
Q ss_pred CccccccCccccc
Q 017479 345 ASLFHDHGLLQDI 357 (371)
Q Consensus 345 ~~ll~D~GLLQDi 357 (371)
.+||++||||-++
T Consensus 45 ~~LLkqHgl~~e~ 57 (58)
T 3a2a_A 45 NKLLRQHGLLGEV 57 (58)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHcCCcccC
Confidence 4799999999754
No 5
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=17.62 E-value=23 Score=26.09 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=8.7
Q ss_pred CccccccCcc
Q 017479 345 ASLFHDHGLL 354 (371)
Q Consensus 345 ~~ll~D~GLL 354 (371)
.+||+|||||
T Consensus 38 ~~LLkqHgll 47 (48)
T 3vmx_A 38 NKLLKQNGLL 47 (48)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHcCCC
Confidence 4789999998
No 6
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=17.15 E-value=33 Score=22.17 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=6.5
Q ss_pred cccccccC
Q 017479 214 SYYRCTSA 221 (371)
Q Consensus 214 sYYRCt~~ 221 (371)
.||+|++.
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 59999973
No 7
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=14.36 E-value=32 Score=26.58 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCcchhhccCccc--------cc--CCCCCccccccccCCCcccchhhhccCCCCEEEEEEecccCC
Q 017479 193 DDGYRWRKYGQKA--------VK--NSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIH 249 (371)
Q Consensus 193 dDGY~WRKYGQK~--------IK--gsp~pRsYYRCt~~gC~AkKqVQRs~dDp~i~~tTY~G~HtH 249 (371)
..++.|.|-|..- +. ...-||++|.|... +.+... .+.+.+-|.=.++|
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~~-----~~~~~~---~s~LqV~yR~C~NC 75 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGT-----DIYKDK---ESTVQVHYRMCQSC 75 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC----------------CEEEEEEEECSCC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecCC-----CCCCcc---cEEEEEEhhhcCCc
Confidence 5678899977641 22 33459999999432 111110 12566677665555
No 8
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=7.85 E-value=84 Score=26.15 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=19.3
Q ss_pred CCCcchhhccCccc----------------ccCCCC---Ccccccccc
Q 017479 192 LDDGYRWRKYGQKA----------------VKNSPH---PRSYYRCTS 220 (371)
Q Consensus 192 ldDGY~WRKYGQK~----------------IKgsp~---pRsYYRCt~ 220 (371)
+++...|.|-|+.. +.+.-. ||+||+|..
T Consensus 32 ~~~~I~W~k~~~~i~~~~~~~~~~~~~~~L~L~~~~~~d~sG~Y~C~~ 79 (105)
T 1xiw_A 32 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP 79 (105)
T ss_dssp TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred CCCceEEEeCCccccccccccccccCCCeEEeccccccCCCceEEEcc
Confidence 44558888877542 334433 899999964
No 9
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=6.46 E-value=1.6e+02 Score=31.98 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=22.7
Q ss_pred CcchhhccCcccccCCCCCcccccccc-----CCCcccchhhhcc
Q 017479 194 DGYRWRKYGQKAVKNSPHPRSYYRCTS-----AGCGVKKRVERSS 233 (371)
Q Consensus 194 DGY~WRKYGQK~IKgsp~pRsYYRCt~-----~gC~AkKqVQRs~ 233 (371)
-||.||| ...+..=. +=.|+.|+. -.-|+-|.+....
T Consensus 30 ~gw~wr~-~~~~~~~~--~~~y~~~s~~l~~~~~lp~~~~~~~~~ 71 (763)
T 3kp1_A 30 RGWTWRQ-PAENLQMG--PFIYKDASTPLENSVALPSAKYFGDID 71 (763)
T ss_dssp CSCCCCC-BCTTEEET--TEEESSEECCCSSCCCCGGGGGGTTCC
T ss_pred CCccccc-cCCCCCcC--CcchhhhchhhhcCCCCchHHHHhhcC
Confidence 4899997 22222222 337888885 2446777777653
No 10
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=5.44 E-value=3.7e+02 Score=24.33 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=13.0
Q ss_pred EEEEEEecccCCCCCCC
Q 017479 238 IVVTTYEGQHIHPSPIT 254 (371)
Q Consensus 238 i~~tTY~G~HtH~~P~~ 254 (371)
.+...-+|.|+|+.|..
T Consensus 143 ~ifFqaKG~HDHpRPe~ 159 (174)
T 1odh_A 143 FIFFQSKGEHDHPRPET 159 (174)
T ss_dssp BEEEEEECCCCSCCCCC
T ss_pred EEEEecccccCCCCCCC
Confidence 34456689999999974
Done!