Query 017480
Match_columns 371
No_of_seqs 295 out of 706
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017480.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017480hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3113 Uncharacterized conser 100.0 1.9E-75 4.2E-80 545.5 15.6 282 82-370 1-293 (293)
2 PF04641 Rtf2: Rtf2 RING-finge 100.0 1.2E-65 2.5E-70 491.9 19.4 182 82-267 1-193 (260)
3 KOG3039 Uncharacterized conser 99.9 9.9E-24 2.1E-28 197.9 8.0 129 116-245 40-280 (303)
4 KOG0883 Cyclophilin type, U bo 99.9 7.9E-22 1.7E-26 194.8 8.8 140 99-246 20-164 (518)
5 cd01793 Fubi Fubi ubiquitin-li 99.8 5.6E-21 1.2E-25 149.9 8.1 73 5-82 1-74 (74)
6 PTZ00044 ubiquitin; Provisiona 99.8 7.2E-20 1.6E-24 143.4 8.1 75 5-82 1-76 (76)
7 cd01802 AN1_N ubiquitin-like d 99.8 1.2E-19 2.6E-24 152.1 8.8 77 3-82 26-103 (103)
8 KOG0004 Ubiquitin/40S ribosoma 99.8 1.6E-19 3.5E-24 159.5 4.8 77 5-84 1-78 (156)
9 KOG0003 Ubiquitin/60s ribosoma 99.8 4E-20 8.7E-25 154.2 0.2 75 5-82 1-76 (128)
10 cd01810 ISG15_repeat2 ISG15 ub 99.8 1E-18 2.3E-23 137.0 7.5 73 7-82 1-74 (74)
11 cd01807 GDX_N ubiquitin-like d 99.8 1.2E-18 2.6E-23 136.5 7.5 72 5-79 1-73 (74)
12 cd01803 Ubiquitin Ubiquitin. U 99.8 2E-18 4.3E-23 134.4 8.2 75 5-82 1-76 (76)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 7.5E-18 1.6E-22 131.1 8.5 75 5-82 1-76 (76)
14 cd01797 NIRF_N amino-terminal 99.7 8.9E-18 1.9E-22 133.9 7.9 74 5-80 1-76 (78)
15 cd01804 midnolin_N Ubiquitin-l 99.7 9.2E-17 2E-21 127.7 7.9 75 4-82 1-76 (78)
16 cd01798 parkin_N amino-termina 99.7 1.6E-16 3.4E-21 123.1 6.8 69 7-78 1-70 (70)
17 cd01805 RAD23_N Ubiquitin-like 99.6 4.2E-16 9.1E-21 122.2 8.1 71 5-78 1-74 (77)
18 cd01809 Scythe_N Ubiquitin-lik 99.6 7.3E-16 1.6E-20 118.7 7.6 71 5-78 1-72 (72)
19 cd01792 ISG15_repeat1 ISG15 ub 99.6 7.2E-16 1.6E-20 122.9 7.4 73 1-78 1-76 (80)
20 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 8.6E-16 1.9E-20 121.2 7.6 70 4-76 1-71 (73)
21 cd01763 Sumo Small ubiquitin-r 99.6 2.4E-15 5.1E-20 122.0 9.0 77 3-82 10-87 (87)
22 cd01794 DC_UbP_C dendritic cel 99.6 2E-15 4.4E-20 117.9 6.7 68 7-77 1-69 (70)
23 cd01808 hPLIC_N Ubiquitin-like 99.6 2.9E-15 6.2E-20 116.5 7.3 70 5-78 1-71 (71)
24 cd01800 SF3a120_C Ubiquitin-li 99.6 3E-15 6.5E-20 118.2 6.7 69 12-83 5-74 (76)
25 cd01796 DDI1_N DNA damage indu 99.5 2E-14 4.3E-19 112.3 6.4 67 7-76 1-70 (71)
26 KOG0005 Ubiquitin-like protein 99.5 1.1E-14 2.4E-19 109.9 3.6 69 5-76 1-70 (70)
27 PF00240 ubiquitin: Ubiquitin 99.5 5.1E-14 1.1E-18 108.0 6.3 68 10-80 1-69 (69)
28 cd01790 Herp_N Homocysteine-re 99.4 3.1E-13 6.7E-18 108.4 7.0 73 4-77 1-78 (79)
29 cd01812 BAG1_N Ubiquitin-like 99.4 5.1E-13 1.1E-17 102.8 6.5 68 5-76 1-69 (71)
30 smart00213 UBQ Ubiquitin homol 99.4 1.2E-12 2.5E-17 97.8 6.2 63 5-71 1-64 (64)
31 TIGR00601 rad23 UV excision re 99.3 9.2E-12 2E-16 125.8 7.7 71 5-78 1-75 (378)
32 cd01815 BMSC_UbP_N Ubiquitin-l 99.2 8.4E-12 1.8E-16 99.2 4.5 54 23-77 16-74 (75)
33 cd01799 Hoil1_N Ubiquitin-like 99.1 1.1E-10 2.4E-15 92.6 6.8 59 17-77 13-74 (75)
34 KOG0001 Ubiquitin and ubiquiti 99.1 3.6E-10 7.9E-15 84.5 8.2 73 6-81 1-74 (75)
35 cd01813 UBP_N UBP ubiquitin pr 99.1 2.1E-10 4.5E-15 90.6 6.7 66 7-76 3-72 (74)
36 cd01769 UBL Ubiquitin-like dom 99.0 9.7E-10 2.1E-14 82.9 7.0 66 9-77 2-68 (69)
37 cd01814 NTGP5 Ubiquitin-like N 99.0 5.9E-10 1.3E-14 94.7 5.5 75 4-80 4-92 (113)
38 PF11976 Rad60-SLD: Ubiquitin- 99.0 7.9E-10 1.7E-14 85.6 5.6 70 5-77 1-72 (72)
39 cd01795 USP48_C USP ubiquitin- 98.9 2.3E-09 5E-14 89.2 5.6 61 18-79 16-78 (107)
40 KOG0010 Ubiquitin-like protein 98.7 1.8E-08 3.9E-13 103.6 6.2 72 5-80 16-88 (493)
41 KOG0011 Nucleotide excision re 98.7 3.2E-08 7E-13 97.4 6.7 72 5-79 1-75 (340)
42 cd01789 Alp11_N Ubiquitin-like 98.6 3.3E-07 7.1E-12 74.0 8.2 70 5-76 2-79 (84)
43 PLN02560 enoyl-CoA reductase 98.4 4.3E-07 9.3E-12 89.9 7.6 70 5-75 1-80 (308)
44 smart00504 Ubox Modified RING 98.4 5.4E-07 1.2E-11 67.7 5.4 50 189-242 2-53 (63)
45 cd01788 ElonginB Ubiquitin-lik 98.3 1.6E-06 3.6E-11 73.9 6.9 70 5-78 3-80 (119)
46 PF13019 Telomere_Sde2: Telome 98.2 4.1E-06 8.8E-11 75.7 7.9 84 5-89 1-95 (162)
47 PF14560 Ubiquitin_2: Ubiquiti 98.2 5.3E-06 1.2E-10 67.0 6.5 71 5-76 2-81 (87)
48 PF11543 UN_NPL4: Nuclear pore 98.1 3.3E-06 7.3E-11 67.9 5.1 72 1-76 1-78 (80)
49 KOG4248 Ubiquitin-like protein 98.1 3.2E-06 7E-11 93.2 5.2 68 7-78 5-73 (1143)
50 PF13881 Rad60-SLD_2: Ubiquiti 98.1 1.9E-05 4.1E-10 67.3 8.6 72 7-80 5-90 (111)
51 cd01801 Tsc13_N Ubiquitin-like 98.0 1.1E-05 2.3E-10 63.9 5.8 68 6-75 2-74 (77)
52 cd00196 UBQ Ubiquitin-like pro 98.0 2.8E-05 6E-10 54.4 6.8 59 18-77 9-68 (69)
53 KOG0006 E3 ubiquitin-protein l 97.8 2.6E-05 5.7E-10 76.9 5.4 71 5-76 1-73 (446)
54 KOG0320 Predicted E3 ubiquitin 97.8 1.6E-05 3.5E-10 72.7 3.3 56 185-242 128-185 (187)
55 KOG0978 E3 ubiquitin ligase in 97.8 6.9E-06 1.5E-10 88.4 0.8 53 187-243 642-697 (698)
56 PF11789 zf-Nse: Zinc-finger o 97.6 4.9E-05 1.1E-09 57.5 3.5 33 119-151 11-43 (57)
57 KOG1769 Ubiquitin-like protein 97.6 0.00052 1.1E-08 57.3 9.1 78 4-84 20-98 (99)
58 TIGR00570 cdk7 CDK-activating 97.5 9.3E-05 2E-09 73.2 4.3 49 189-238 4-57 (309)
59 PF04564 U-box: U-box domain; 97.4 0.00017 3.7E-09 56.7 4.3 52 187-242 3-57 (73)
60 smart00504 Ubox Modified RING 97.3 0.00042 9.2E-09 51.8 5.0 53 120-173 2-54 (63)
61 PF13445 zf-RING_UBOX: RING-ty 97.2 0.00024 5.2E-09 50.8 2.0 33 191-224 1-33 (43)
62 PLN03208 E3 ubiquitin-protein 97.1 0.00049 1.1E-08 64.0 4.5 57 186-246 16-90 (193)
63 PF14634 zf-RING_5: zinc-RING 97.1 0.00038 8.1E-09 49.4 2.7 42 190-232 1-44 (44)
64 KOG4495 RNA polymerase II tran 96.8 0.0014 3E-08 54.6 3.5 60 5-68 3-65 (110)
65 PF04564 U-box: U-box domain; 96.7 0.002 4.2E-08 50.6 3.6 52 120-172 5-57 (73)
66 PF13920 zf-C3HC4_3: Zinc fing 96.6 0.0023 4.9E-08 46.4 3.6 43 189-235 3-48 (50)
67 PF13639 zf-RING_2: Ring finge 96.6 0.0018 3.9E-08 45.6 2.7 40 190-230 2-43 (44)
68 PF11789 zf-Nse: Zinc-finger o 96.6 0.0019 4.2E-08 48.8 2.9 43 186-231 9-55 (57)
69 PF14447 Prok-RING_4: Prokaryo 96.5 0.001 2.3E-08 49.9 0.9 34 206-239 21-54 (55)
70 COG5109 Uncharacterized conser 96.5 0.0022 4.7E-08 63.5 3.3 55 186-241 334-393 (396)
71 PF13923 zf-C3HC4_2: Zinc fing 96.3 0.0053 1.2E-07 42.2 3.6 37 191-230 1-39 (39)
72 KOG2817 Predicted E3 ubiquitin 96.2 0.003 6.4E-08 64.2 2.8 53 186-239 332-389 (394)
73 PF11470 TUG-UBL1: GLUT4 regul 96.2 0.0062 1.3E-07 47.3 4.0 58 17-75 7-65 (65)
74 KOG0317 Predicted E3 ubiquitin 96.0 0.0043 9.2E-08 60.8 2.7 54 186-243 237-292 (293)
75 KOG1872 Ubiquitin-specific pro 95.9 0.017 3.8E-07 59.9 6.4 65 7-75 6-72 (473)
76 cd00162 RING RING-finger (Real 95.7 0.01 2.2E-07 40.2 2.9 41 191-234 2-45 (45)
77 TIGR00599 rad18 DNA repair pro 95.7 0.009 1.9E-07 61.4 3.6 48 186-237 24-73 (397)
78 PHA02929 N1R/p28-like protein; 95.7 0.0083 1.8E-07 57.7 3.1 47 189-235 175-227 (238)
79 PHA02926 zinc finger-like prot 95.4 0.0082 1.8E-07 57.1 2.1 48 188-235 170-230 (242)
80 PF10302 DUF2407: DUF2407 ubiq 95.3 0.04 8.8E-07 46.0 5.5 46 16-61 11-61 (97)
81 PF00789 UBX: UBX domain; Int 95.1 0.12 2.6E-06 40.8 7.7 69 5-76 7-81 (82)
82 COG2104 ThiS Sulfur transfer p 95.1 0.13 2.8E-06 40.4 7.5 66 5-83 3-68 (68)
83 PRK07440 hypothetical protein; 95.1 0.15 3.3E-06 39.8 7.9 70 1-83 1-70 (70)
84 KOG1645 RING-finger-containing 94.9 0.019 4.1E-07 58.8 3.1 69 190-259 6-82 (463)
85 cd01811 OASL_repeat1 2'-5' oli 94.9 0.1 2.2E-06 41.8 6.5 63 5-71 1-69 (80)
86 KOG3493 Ubiquitin-like protein 94.8 0.012 2.5E-07 45.9 0.9 67 6-75 3-70 (73)
87 PF00097 zf-C3HC4: Zinc finger 94.7 0.04 8.7E-07 37.8 3.4 37 191-230 1-41 (41)
88 PF14453 ThiS-like: ThiS-like 94.5 0.18 3.9E-06 38.3 6.8 54 5-76 1-54 (57)
89 smart00184 RING Ring finger. E 94.2 0.042 9E-07 35.7 2.4 36 191-230 1-39 (39)
90 PRK06437 hypothetical protein; 93.7 0.43 9.2E-06 37.0 7.6 55 19-83 13-67 (67)
91 PRK05659 sulfur carrier protei 93.7 0.43 9.4E-06 36.1 7.6 66 5-83 1-66 (66)
92 COG5175 MOT2 Transcriptional r 93.6 0.076 1.6E-06 53.4 4.1 59 191-249 17-78 (480)
93 KOG2164 Predicted E3 ubiquitin 93.6 0.043 9.4E-07 57.5 2.5 54 188-245 186-246 (513)
94 PRK08364 sulfur carrier protei 93.4 0.73 1.6E-05 35.8 8.6 67 4-83 4-70 (70)
95 PF14835 zf-RING_6: zf-RING of 93.4 0.036 7.9E-07 43.1 1.1 52 189-244 8-59 (65)
96 KOG2879 Predicted E3 ubiquitin 93.2 0.095 2.1E-06 51.3 3.9 55 178-235 229-287 (298)
97 PF15044 CLU_N: Mitochondrial 93.2 0.15 3.3E-06 40.6 4.4 55 23-77 1-57 (76)
98 PF08817 YukD: WXG100 protein 93.2 0.12 2.6E-06 40.9 3.9 65 8-75 6-78 (79)
99 smart00166 UBX Domain present 93.1 0.5 1.1E-05 37.4 7.3 68 5-75 5-78 (80)
100 KOG1639 Steroid reductase requ 93.0 0.16 3.4E-06 49.3 5.1 70 5-75 1-76 (297)
101 PRK05863 sulfur carrier protei 93.0 0.51 1.1E-05 36.1 6.9 65 5-83 1-65 (65)
102 PRK06944 sulfur carrier protei 92.8 0.79 1.7E-05 34.5 7.7 65 5-82 1-65 (65)
103 KOG4739 Uncharacterized protei 92.8 0.065 1.4E-06 51.4 2.1 51 189-244 4-54 (233)
104 PRK08053 sulfur carrier protei 92.6 0.84 1.8E-05 34.9 7.7 66 5-82 1-66 (66)
105 PF15227 zf-C3HC4_4: zinc fing 92.2 0.19 4.1E-06 35.5 3.4 36 191-230 1-42 (42)
106 KOG0823 Predicted E3 ubiquitin 92.2 0.16 3.4E-06 48.6 3.9 58 185-246 44-106 (230)
107 KOG0289 mRNA splicing factor [ 92.0 0.12 2.6E-06 53.5 3.0 55 121-175 2-56 (506)
108 COG5574 PEX10 RING-finger-cont 91.9 0.086 1.9E-06 51.3 1.8 53 186-242 213-269 (271)
109 PRK07696 sulfur carrier protei 91.6 1.1 2.4E-05 34.5 7.4 66 5-83 1-67 (67)
110 PRK06266 transcription initiat 91.6 0.4 8.6E-06 44.2 5.7 55 186-263 115-169 (178)
111 KOG3800 Predicted E3 ubiquitin 91.4 0.24 5.1E-06 48.9 4.3 49 190-239 2-55 (300)
112 cd00565 ThiS ThiaminS ubiquiti 91.2 0.83 1.8E-05 34.7 6.3 58 20-82 8-65 (65)
113 cd01770 p47_UBX p47-like ubiqu 90.5 1.4 3E-05 35.2 7.2 64 5-71 5-73 (79)
114 PRK06083 sulfur carrier protei 90.4 1.5 3.3E-05 35.6 7.4 67 4-83 18-84 (84)
115 TIGR00373 conserved hypothetic 90.3 0.39 8.4E-06 43.3 4.3 80 143-259 78-157 (158)
116 cd01772 SAKS1_UBX SAKS1-like U 90.2 1.8 3.9E-05 34.4 7.6 68 5-76 5-78 (79)
117 cd01774 Faf1_like2_UBX Faf1 ik 89.8 2.4 5.2E-05 34.4 8.1 70 4-76 4-83 (85)
118 PRK06488 sulfur carrier protei 89.7 1.9 4.2E-05 32.6 7.1 65 5-82 1-65 (65)
119 KOG2177 Predicted E3 ubiquitin 89.7 0.15 3.3E-06 46.8 1.2 42 186-231 11-54 (386)
120 cd01767 UBX UBX (ubiquitin reg 89.6 2.2 4.7E-05 33.4 7.6 67 5-75 3-74 (77)
121 KOG2979 Protein involved in DN 89.5 0.35 7.5E-06 47.0 3.5 67 119-223 176-243 (262)
122 PF09379 FERM_N: FERM N-termin 89.4 1.5 3.2E-05 34.0 6.5 67 9-78 1-75 (80)
123 cd01773 Faf1_like1_UBX Faf1 ik 89.1 2.6 5.7E-05 34.2 7.8 71 5-78 6-81 (82)
124 cd00754 MoaD Ubiquitin domain 88.9 1.5 3.4E-05 33.8 6.3 59 18-82 17-80 (80)
125 KOG0013 Uncharacterized conser 88.7 0.77 1.7E-05 43.6 5.1 62 18-80 158-220 (231)
126 KOG1814 Predicted E3 ubiquitin 88.4 0.25 5.5E-06 50.8 1.8 45 186-231 182-236 (445)
127 TIGR01683 thiS thiamine biosyn 88.2 2 4.4E-05 32.5 6.3 58 20-82 7-64 (64)
128 COG5227 SMT3 Ubiquitin-like pr 87.3 0.76 1.6E-05 38.2 3.6 76 4-82 24-100 (103)
129 cd01771 Faf1_UBX Faf1 UBX doma 87.3 3.7 8.1E-05 32.9 7.6 71 5-78 5-80 (80)
130 PF11620 GABP-alpha: GA-bindin 86.8 2 4.3E-05 35.3 5.8 58 20-80 8-66 (88)
131 PRK11840 bifunctional sulfur c 85.8 3.3 7.1E-05 41.8 8.0 66 5-83 1-66 (326)
132 PF12678 zf-rbx1: RING-H2 zinc 85.6 0.97 2.1E-05 35.5 3.4 40 191-230 22-72 (73)
133 PF10367 Vps39_2: Vacuolar sor 85.0 0.46 1E-05 38.7 1.3 29 190-220 80-108 (109)
134 KOG4583 Membrane-associated ER 84.6 0.51 1.1E-05 47.6 1.7 58 4-61 9-69 (391)
135 cd00350 rubredoxin_like Rubred 83.9 0.87 1.9E-05 30.5 2.1 11 223-233 16-26 (33)
136 TIGR01682 moaD molybdopterin c 83.2 5.3 0.00012 31.3 6.7 59 18-82 17-80 (80)
137 PF12754 Blt1: Cell-cycle cont 82.7 0.39 8.5E-06 47.8 0.0 79 7-86 81-185 (309)
138 PF09986 DUF2225: Uncharacteri 82.2 1.9 4.1E-05 40.7 4.4 31 225-257 49-79 (214)
139 KOG2169 Zn-finger transcriptio 82.1 0.96 2.1E-05 49.4 2.7 102 132-240 251-361 (636)
140 COG5222 Uncharacterized conser 82.1 1.7 3.7E-05 43.4 4.1 74 1-79 1-77 (427)
141 PLN02799 Molybdopterin synthas 82.1 3.5 7.5E-05 32.5 5.2 60 17-82 19-82 (82)
142 COG5152 Uncharacterized conser 81.4 0.7 1.5E-05 43.6 1.2 72 160-235 161-241 (259)
143 KOG0824 Predicted E3 ubiquitin 81.2 0.69 1.5E-05 46.0 1.1 51 190-246 9-62 (324)
144 PRK06393 rpoE DNA-directed RNA 79.4 1.5 3.2E-05 34.2 2.2 39 204-250 5-47 (64)
145 PF14451 Ub-Mut7C: Mut7-C ubiq 78.4 6.6 0.00014 31.7 5.8 51 17-76 23-74 (81)
146 PF08337 Plexin_cytopl: Plexin 78.1 2.5 5.4E-05 45.4 4.1 76 4-80 189-291 (539)
147 KOG3206 Alpha-tubulin folding 77.7 6.3 0.00014 37.5 6.2 68 7-76 4-79 (234)
148 TIGR01687 moaD_arch MoaD famil 76.5 9.3 0.0002 30.3 6.2 61 17-82 16-88 (88)
149 PF02891 zf-MIZ: MIZ/SP-RING z 74.7 2.6 5.7E-05 30.9 2.3 42 189-233 3-50 (50)
150 KOG3842 Adaptor protein Pellin 73.1 2.6 5.7E-05 42.3 2.6 29 207-235 375-414 (429)
151 cd00729 rubredoxin_SM Rubredox 72.8 3.1 6.6E-05 28.2 2.1 26 188-233 2-27 (34)
152 PF04423 Rad50_zn_hook: Rad50 72.7 2.8 6.1E-05 30.9 2.1 21 217-237 11-33 (54)
153 PRK08351 DNA-directed RNA poly 72.7 3.8 8.3E-05 31.6 2.8 27 224-250 15-45 (61)
154 PLN03208 E3 ubiquitin-protein 72.7 8.7 0.00019 36.1 5.7 80 113-212 12-91 (193)
155 COG5540 RING-finger-containing 72.4 3 6.5E-05 41.7 2.8 45 189-234 324-371 (374)
156 PF02597 ThiS: ThiS family; I 71.2 8.2 0.00018 29.4 4.5 61 19-82 14-77 (77)
157 KOG0826 Predicted E3 ubiquitin 70.7 1.4 3.1E-05 44.3 0.1 51 188-241 300-352 (357)
158 COG2093 DNA-directed RNA polym 70.7 3.6 7.8E-05 31.9 2.3 26 225-250 19-48 (64)
159 KOG2462 C2H2-type Zn-finger pr 70.7 3 6.6E-05 41.0 2.3 38 186-235 213-254 (279)
160 KOG0289 mRNA splicing factor [ 69.4 3.3 7.2E-05 43.2 2.4 53 189-244 1-55 (506)
161 PF06234 TmoB: Toluene-4-monoo 68.7 20 0.00042 29.5 6.3 63 14-77 12-83 (85)
162 COG1675 TFA1 Transcription ini 68.0 12 0.00026 34.6 5.6 55 186-263 111-165 (176)
163 KOG2979 Protein involved in DN 67.7 3.7 8E-05 40.1 2.2 64 186-256 174-242 (262)
164 smart00295 B41 Band 4.1 homolo 66.9 38 0.00083 30.2 8.6 74 4-80 3-85 (207)
165 KOG0287 Postreplication repair 65.3 2.5 5.5E-05 42.9 0.6 48 188-239 23-72 (442)
166 COG1592 Rubrerythrin [Energy p 65.0 3.6 7.8E-05 37.7 1.5 25 188-233 134-158 (166)
167 KOG0827 Predicted E3 ubiquitin 64.9 4.5 9.7E-05 41.7 2.3 56 188-245 4-64 (465)
168 KOG0804 Cytoplasmic Zn-finger 64.8 3.7 8.1E-05 43.0 1.7 43 189-231 176-218 (493)
169 KOG0802 E3 ubiquitin ligase [P 64.6 3.5 7.5E-05 44.1 1.6 56 188-243 291-349 (543)
170 PF04710 Pellino: Pellino; In 62.7 2.5 5.3E-05 43.6 0.0 49 187-235 327-401 (416)
171 cd06409 PB1_MUG70 The MUG70 pr 61.6 21 0.00046 29.3 5.3 42 7-50 3-48 (86)
172 PF14446 Prok-RING_1: Prokaryo 61.0 6 0.00013 29.8 1.8 19 225-243 6-24 (54)
173 cd01760 RBD Ubiquitin-like dom 60.9 32 0.00069 27.2 6.0 49 8-58 3-56 (72)
174 TIGR03830 CxxCG_CxxCG_HTH puta 60.5 8.9 0.00019 32.2 3.0 41 191-236 1-43 (127)
175 cd06406 PB1_P67 A PB1 domain i 60.3 15 0.00033 29.8 4.2 37 18-54 12-49 (80)
176 COG5432 RAD18 RING-finger-cont 59.8 5.3 0.00011 39.9 1.7 47 186-236 23-71 (391)
177 PRK11130 moaD molybdopterin sy 59.0 47 0.001 26.1 6.8 58 18-82 18-81 (81)
178 PF13923 zf-C3HC4_2: Zinc fing 58.3 13 0.00027 25.2 3.0 32 122-153 1-32 (39)
179 smart00531 TFIIE Transcription 58.3 7.7 0.00017 34.3 2.4 37 186-237 97-136 (147)
180 KOG2932 E3 ubiquitin ligase in 57.7 6.3 0.00014 39.7 1.8 30 207-236 106-135 (389)
181 PF14836 Ubiquitin_3: Ubiquiti 57.5 52 0.0011 27.2 6.9 60 18-79 15-81 (88)
182 KOG1940 Zn-finger protein [Gen 57.2 5 0.00011 39.6 1.1 46 187-232 157-204 (276)
183 PF05605 zf-Di19: Drought indu 56.9 5.3 0.00012 29.3 0.9 12 188-199 2-13 (54)
184 KOG2086 Protein tyrosine phosp 55.7 15 0.00032 37.8 4.2 62 7-71 308-374 (380)
185 KOG1002 Nucleotide excision re 55.4 13 0.00028 40.0 3.8 48 185-236 533-587 (791)
186 PF12773 DZR: Double zinc ribb 55.2 6.8 0.00015 27.9 1.3 42 191-237 1-42 (50)
187 PRK00464 nrdR transcriptional 54.5 4.5 9.9E-05 36.6 0.3 40 189-236 1-40 (154)
188 PF04710 Pellino: Pellino; In 51.9 5 0.00011 41.5 0.1 48 185-233 274-337 (416)
189 KOG0825 PHD Zn-finger protein 51.2 3.8 8.3E-05 45.6 -0.9 47 190-237 125-173 (1134)
190 cd00730 rubredoxin Rubredoxin; 51.1 7.7 0.00017 28.6 1.0 17 217-233 26-43 (50)
191 PF10790 DUF2604: Protein of U 50.6 59 0.0013 25.7 5.8 60 18-78 7-71 (76)
192 PF13240 zinc_ribbon_2: zinc-r 50.5 8.4 0.00018 23.9 0.9 7 227-233 16-22 (23)
193 KOG0826 Predicted E3 ubiquitin 50.5 11 0.00025 38.0 2.4 82 78-171 271-352 (357)
194 KOG4628 Predicted E3 ubiquitin 50.3 12 0.00026 38.1 2.6 61 166-232 212-275 (348)
195 COG5100 NPL4 Nuclear pore prot 50.3 47 0.001 34.8 6.7 69 5-77 1-78 (571)
196 smart00455 RBD Raf-like Ras-bi 50.2 84 0.0018 24.4 6.8 48 9-58 4-54 (70)
197 COG5220 TFB3 Cdk activating ki 50.1 7.3 0.00016 37.9 0.9 43 190-232 12-61 (314)
198 PF14570 zf-RING_4: RING/Ubox 49.7 8.8 0.00019 28.2 1.1 45 191-235 1-48 (48)
199 PRK01777 hypothetical protein; 49.6 59 0.0013 27.0 6.1 55 17-80 17-78 (95)
200 TIGR03831 YgiT_finger YgiT-typ 49.3 7.3 0.00016 26.9 0.6 42 191-236 1-44 (46)
201 COG5417 Uncharacterized small 48.9 95 0.0021 25.2 6.8 66 7-75 9-80 (81)
202 PF14353 CpXC: CpXC protein 48.4 32 0.0007 29.3 4.6 69 188-261 1-86 (128)
203 PF12861 zf-Apc11: Anaphase-pr 48.3 15 0.00032 30.2 2.3 45 191-235 24-82 (85)
204 PF06906 DUF1272: Protein of u 48.2 23 0.00049 27.0 3.1 46 191-236 8-53 (57)
205 PHA02768 hypothetical protein; 48.1 13 0.00028 28.2 1.7 43 188-245 5-53 (55)
206 KOG1734 Predicted RING-contain 47.6 8.5 0.00018 38.0 1.0 55 189-244 225-289 (328)
207 PF10915 DUF2709: Protein of u 45.1 10 0.00022 35.8 1.0 84 131-234 38-123 (238)
208 cd01782 AF6_RA_repeat1 Ubiquit 44.8 1.8E+02 0.0039 25.1 8.4 47 2-48 21-73 (112)
209 cd01817 RGS12_RBD Ubiquitin do 44.3 1.1E+02 0.0024 24.5 6.6 46 11-58 6-54 (73)
210 COG5243 HRD1 HRD ubiquitin lig 43.9 16 0.00034 37.8 2.2 44 190-233 289-343 (491)
211 PF10013 DUF2256: Uncharacteri 43.5 11 0.00023 27.1 0.7 14 222-235 6-19 (42)
212 KOG1785 Tyrosine kinase negati 42.9 15 0.00032 38.3 1.8 43 202-244 379-425 (563)
213 PLN02195 cellulose synthase A 42.8 23 0.0005 40.7 3.5 49 189-237 7-61 (977)
214 KOG1813 Predicted E3 ubiquitin 40.8 14 0.00031 36.9 1.3 73 159-235 205-286 (313)
215 KOG0320 Predicted E3 ubiquitin 39.2 35 0.00077 31.8 3.5 46 109-154 121-167 (187)
216 cd06397 PB1_UP1 Uncharacterize 38.3 58 0.0013 26.6 4.2 44 6-52 2-46 (82)
217 PF15616 TerY-C: TerY-C metal 37.8 14 0.0003 32.7 0.7 37 190-234 79-115 (131)
218 PF06093 Spt4: Spt4/RpoE2 zinc 37.0 19 0.00042 28.9 1.3 41 208-251 5-60 (77)
219 KOG3842 Adaptor protein Pellin 36.1 17 0.00037 36.8 1.0 54 186-243 288-357 (429)
220 KOG1571 Predicted E3 ubiquitin 35.8 43 0.00093 34.3 3.8 39 190-233 307-345 (355)
221 PRK04023 DNA polymerase II lar 35.5 25 0.00054 40.5 2.3 55 186-245 624-684 (1121)
222 PRK14559 putative protein seri 34.9 26 0.00057 38.6 2.3 25 189-215 2-26 (645)
223 PRK14714 DNA polymerase II lar 34.5 30 0.00064 40.9 2.7 55 187-245 666-730 (1337)
224 PLN02189 cellulose synthase 34.1 32 0.00069 39.8 2.9 49 187-235 33-87 (1040)
225 KOG0309 Conserved WD40 repeat- 33.9 27 0.00059 39.1 2.3 42 186-229 1026-1069(1081)
226 COG4068 Uncharacterized protei 33.8 62 0.0013 25.0 3.5 14 224-237 8-21 (64)
227 PF14732 UAE_UbL: Ubiquitin/SU 33.3 1.4E+02 0.0031 24.2 5.9 49 26-75 8-66 (87)
228 COG4525 TauB ABC-type taurine 32.4 45 0.00097 32.2 3.1 85 42-154 5-92 (259)
229 PF07191 zinc-ribbons_6: zinc- 32.2 11 0.00023 29.9 -0.8 39 189-235 2-41 (70)
230 COG4306 Uncharacterized protei 31.9 82 0.0018 28.0 4.5 65 187-260 38-114 (160)
231 PTZ00380 microtubule-associate 31.5 42 0.00091 29.3 2.6 40 22-61 46-86 (121)
232 PF02196 RBD: Raf-like Ras-bin 31.4 2.5E+02 0.0054 21.8 7.1 52 8-61 4-58 (71)
233 PF00301 Rubredoxin: Rubredoxi 30.9 33 0.00071 25.0 1.6 20 214-233 23-43 (47)
234 KOG1001 Helicase-like transcri 30.5 13 0.00028 41.1 -0.9 56 189-249 455-514 (674)
235 KOG2593 Transcription initiati 30.2 52 0.0011 34.5 3.5 39 185-238 125-167 (436)
236 KOG0823 Predicted E3 ubiquitin 29.3 66 0.0014 31.1 3.7 38 116-154 44-81 (230)
237 KOG0012 DNA damage inducible p 28.9 64 0.0014 33.2 3.8 63 18-85 14-79 (380)
238 PF13894 zf-C2H2_4: C2H2-type 28.3 34 0.00074 19.6 1.1 9 227-235 3-11 (24)
239 KOG0402 60S ribosomal protein 28.2 19 0.00042 29.6 0.0 26 185-211 33-58 (92)
240 COG4338 Uncharacterized protei 27.9 17 0.00037 27.0 -0.3 12 224-235 12-23 (54)
241 KOG3970 Predicted E3 ubiquitin 27.5 77 0.0017 30.8 3.9 60 191-258 53-124 (299)
242 cd06411 PB1_p51 The PB1 domain 27.3 1E+02 0.0022 25.0 3.9 36 17-52 7-43 (78)
243 PF09845 DUF2072: Zn-ribbon co 27.3 30 0.00066 30.6 1.0 24 209-234 6-29 (131)
244 PF05290 Baculo_IE-1: Baculovi 27.1 55 0.0012 29.2 2.6 48 187-237 79-134 (140)
245 smart00144 PI3K_rbd PI3-kinase 26.8 2.9E+02 0.0063 23.1 6.9 62 17-79 29-105 (108)
246 KOG0396 Uncharacterized conser 26.6 17 0.00037 37.3 -0.7 53 186-239 328-383 (389)
247 COG5627 MMS21 DNA repair prote 26.5 29 0.00063 33.8 0.8 33 119-151 189-221 (275)
248 COG3813 Uncharacterized protei 26.4 69 0.0015 25.8 2.8 47 191-237 8-54 (84)
249 PHA02929 N1R/p28-like protein; 26.0 1.2E+02 0.0026 29.4 4.9 33 119-151 174-213 (238)
250 PF00788 RA: Ras association ( 26.0 1.4E+02 0.003 23.1 4.6 45 5-49 5-52 (93)
251 TIGR00375 conserved hypothetic 25.9 32 0.0007 35.4 1.1 35 200-236 236-270 (374)
252 COG1773 Rubredoxin [Energy pro 25.7 31 0.00068 26.1 0.7 49 188-242 3-52 (55)
253 cd01768 RA RA (Ras-associating 25.4 3.2E+02 0.007 21.2 7.5 42 18-59 14-64 (87)
254 smart00666 PB1 PB1 domain. Pho 25.2 1.5E+02 0.0031 22.8 4.5 35 18-52 12-47 (81)
255 PF06676 DUF1178: Protein of u 25.1 78 0.0017 28.6 3.3 28 206-233 6-41 (148)
256 PF09986 DUF2225: Uncharacteri 24.9 28 0.0006 32.8 0.4 13 224-236 5-17 (214)
257 KOG3161 Predicted E3 ubiquitin 24.9 30 0.00065 38.1 0.7 55 189-247 12-66 (861)
258 PRK14890 putative Zn-ribbon RN 24.8 62 0.0013 24.9 2.2 33 186-231 23-55 (59)
259 PHA00732 hypothetical protein 24.5 62 0.0013 25.9 2.3 39 188-236 1-39 (79)
260 COG3364 Zn-ribbon containing p 24.4 31 0.00067 29.5 0.5 23 209-233 7-29 (112)
261 smart00734 ZnF_Rad18 Rad18-lik 24.1 27 0.00058 22.2 0.1 10 226-235 3-12 (26)
262 PRK00398 rpoP DNA-directed RNA 24.1 15 0.00032 26.1 -1.3 12 224-235 21-32 (46)
263 COG1885 Uncharacterized protei 23.8 36 0.00077 29.2 0.8 13 224-236 49-61 (115)
264 PLN02436 cellulose synthase A 23.7 55 0.0012 38.1 2.5 49 187-235 35-89 (1094)
265 KOG2034 Vacuolar sorting prote 23.7 45 0.00098 37.9 1.8 31 190-222 819-849 (911)
266 KOG0317 Predicted E3 ubiquitin 23.6 81 0.0017 31.5 3.3 34 120-154 240-273 (293)
267 KOG0297 TNF receptor-associate 23.5 49 0.0011 34.1 1.9 53 186-241 19-73 (391)
268 PF10571 UPF0547: Uncharacteri 23.2 37 0.00079 21.7 0.6 11 225-235 15-25 (26)
269 PRK02224 chromosome segregatio 22.9 94 0.002 34.8 4.1 16 224-239 451-466 (880)
270 KOG0658 Glycogen synthase kina 22.6 52 0.0011 33.8 1.8 53 167-219 149-221 (364)
271 PF12660 zf-TFIIIC: Putative z 22.6 32 0.0007 28.6 0.3 19 114-132 35-53 (99)
272 PF13913 zf-C2HC_2: zinc-finge 22.6 30 0.00065 21.7 0.1 12 225-236 3-14 (25)
273 KOG2462 C2H2-type Zn-finger pr 22.4 73 0.0016 31.6 2.7 28 209-236 187-227 (279)
274 PF08271 TF_Zn_Ribbon: TFIIB z 22.1 32 0.0007 24.0 0.2 30 189-218 1-33 (43)
275 PF15092 UPF0728: Uncharacteri 21.9 62 0.0014 26.8 1.8 17 185-201 58-74 (88)
276 PF00096 zf-C2H2: Zinc finger, 21.9 46 0.00099 19.5 0.8 11 189-199 1-11 (23)
277 cd01764 Urm1 Urm1-like ubuitin 21.8 3E+02 0.0065 22.5 5.9 61 20-82 22-94 (94)
278 smart00064 FYVE Protein presen 21.5 49 0.0011 24.9 1.1 34 189-222 11-44 (68)
279 COG5194 APC11 Component of SCF 21.4 95 0.0021 25.5 2.8 47 190-236 33-82 (88)
280 KOG4642 Chaperone-dependent E3 21.0 45 0.00098 32.8 1.0 37 116-153 208-244 (284)
281 PF14446 Prok-RING_1: Prokaryo 20.9 79 0.0017 23.9 2.1 45 189-235 6-52 (54)
282 PF08783 DWNN: DWNN domain; I 20.9 1.5E+02 0.0032 23.6 3.8 54 20-79 13-73 (74)
283 PF13639 zf-RING_2: Ring finge 20.8 96 0.0021 21.3 2.4 34 121-154 2-37 (44)
284 PF11069 DUF2870: Protein of u 20.8 1.1E+02 0.0024 25.9 3.1 35 47-83 3-39 (98)
285 COG5189 SFP1 Putative transcri 20.8 28 0.00061 35.3 -0.5 52 186-237 347-411 (423)
286 cd05992 PB1 The PB1 domain is 20.6 2.7E+02 0.0059 21.1 5.2 34 19-52 12-47 (81)
287 PF13445 zf-RING_UBOX: RING-ty 20.6 97 0.0021 22.0 2.4 30 122-153 1-34 (43)
288 PRK03824 hypA hydrogenase nick 20.5 89 0.0019 27.4 2.7 14 186-199 68-81 (135)
289 PF02017 CIDE-N: CIDE-N domain 20.5 2.1E+02 0.0045 23.1 4.5 62 8-77 6-70 (78)
290 COG5627 MMS21 DNA repair prote 20.3 89 0.0019 30.5 2.8 66 188-261 189-260 (275)
291 COG4739 Uncharacterized protei 20.3 1.1E+02 0.0024 27.9 3.2 28 236-263 30-57 (182)
292 TIGR00280 L37a ribosomal prote 20.1 81 0.0017 26.3 2.1 25 186-211 33-57 (91)
No 1
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.9e-75 Score=545.54 Aligned_cols=282 Identities=41% Similarity=0.615 Sum_probs=218.4
Q ss_pred CCCCCccccccchhhhhhhhccCCCCCCCcchhcccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC-CCCCcc
Q 017480 82 GGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK-NLPKQY 160 (371)
Q Consensus 82 ~~~~~~si~a~~rd~~l~~~~~kk~ek~d~~e~~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k-~~~~~~ 160 (371)
||+||||| |+|||||++ .+|+|++|+++++.++|.+|+||++||+.|||+|++|+|||||+||++||++ .+|+.+
T Consensus 1 mG~DGGti--p~R~eLVk~--~kK~ek~Dkd~~r~sqw~~CaLtqepL~~Piv~c~lGrLYNKe~vi~~LL~Ks~~pksa 76 (293)
T KOG3113|consen 1 MGCDGGTI--PKRDELVKE--PKKVEKVDKDAERVSQWRNCALTQEPLRRPIVACGLGRLYNKESVIEFLLDKSSLPKSA 76 (293)
T ss_pred CCCCCCCc--cchhhhhhC--CCCcCccChhHHHHHHHhhcccccCccccceeeehhhccccHHHHHHHHHhcccCCcch
Confidence 79999999 899999998 9999999999999999999999999999999999999999999999999999 689999
Q ss_pred CccCCCCCceeeeeeecCCCCCCC-------CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCC
Q 017480 161 SYIKGLKDLINVKLSRVPGAEENG-------DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEE 233 (371)
Q Consensus 161 ~HIksLKDlv~Lklt~n~~~~~~~-------~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~ 233 (371)
+||+||||+++|++|.||++.+|. ..++||||||+.+|||.++|+|||+||||||++||+|+++..|++||.+
T Consensus 77 ShIKslKDvveLklt~n~~~~gD~~~~~~D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~ 156 (293)
T KOG3113|consen 77 SHIKSLKDVVELKLTLNPAFEGDKGNKHDDTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAA 156 (293)
T ss_pred hhhcchhhHhheecccCcccccccCccccccccceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCc
Confidence 999999999999999999885422 4689999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEecCChHHHHHHHHHHHHHHHhhhhhhh-hhhcCCCCccCCccccccccccccccCccccccccccccccccc
Q 017480 234 FGEMDKILINGNEEEISVLRERMEEEKLKVKEKKV-KKVKNGEDCVGEDVAVDSLRVSGAKRGAVENKSGEKALAKVDVN 312 (371)
Q Consensus 234 f~~~DiI~Lnp~~ee~~~l~~rm~~~~ak~~~kk~-kk~k~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 312 (371)
|.++|+|+|||++||++.|+.|||+++++.+.+|+ ||.|+.+..++. ......+.+..+....+....+.....++..
T Consensus 157 y~~~dvIvlNg~~E~~dllk~rme~~kak~k~~Kk~Kk~KK~~~~~e~-a~~~~~~~s~~k~a~~e~~s~~~~~K~~d~~ 235 (293)
T KOG3113|consen 157 YQEDDVIVLNGTEEDVDLLKTRMEERKAKAKLEKKDKKPKKAESKSEP-ASEKAPGPSKEKTAKAEEPSTSSKEKAVDLA 235 (293)
T ss_pred ccccCeEeeCCCHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhcccc-hhhhcCCccccccccCCCCcccchhhhccch
Confidence 99999999999999999999999999998875443 332332222111 0000000111122111111100000011112
Q ss_pred CcccCCCCCCCCchhhhhhhc-ccCCCCCchhhhhhcccCCCC-CCCccceeeccccCCC
Q 017480 313 GKVGNVNGASGNPAVKRFKAA-DMAPPNANKQVYASIFTSSKK-SDFKETYSCRSLPLGR 370 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~k~~k~~-~~~~~~a~~~vykSlFts~~~-~~~~~~~~~~~~~~~~ 370 (371)
.+....+. ..++..++-|+. ++++|.++ +|||||||||++ .++.|+|.|+..|||+
T Consensus 236 ~kl~~~n~-~~~~k~~~~ks~~sV~~~~~s-e~yKsLFTt~k~~kd~~~~hwvt~~p~~~ 293 (293)
T KOG3113|consen 236 KKLTAMNE-SKAGKPPCGKSKTSVADPETS-EVYKSLFTTHKSAKDEEEAHWVTYNPLYF 293 (293)
T ss_pred hhhhhhhh-ccccccccccccCcccchhHH-HHHHHHHhhhhhhcccccceeEeeccccC
Confidence 22111222 233334444444 77776655 999999999966 4899999999999986
No 2
>PF04641 Rtf2: Rtf2 RING-finger
Probab=100.00 E-value=1.2e-65 Score=491.89 Aligned_cols=182 Identities=50% Similarity=0.836 Sum_probs=169.3
Q ss_pred CCCCCccccccchhhhhhhhccCCCCCCCcchhcccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCC----CC
Q 017480 82 GGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN----LP 157 (371)
Q Consensus 82 ~~~~~~si~a~~rd~~l~~~~~kk~ek~d~~e~~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~----~~ 157 (371)
||+||||| |+|++||++ +++++++|+++.+.++|+|||||++||+.|||+|++|+|||||+||||||+++ .+
T Consensus 1 MG~DGGsi--~~R~~lv~~--~~k~~~~d~~~~~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~ 76 (260)
T PF04641_consen 1 MGNDGGSI--PKRRELVKT--KKKDEKVDKEEEREARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLP 76 (260)
T ss_pred CCCCCCcc--chHHHHHhC--cccccccCHhHHhhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCc
Confidence 79999999 899999998 88889999999999999999999999999999999999999999999999984 57
Q ss_pred CccCccCCCCCceeeeeeecCCCCCC------CCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-cCCCCCC
Q 017480 158 KQYSYIKGLKDLINVKLSRVPGAEEN------GDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-SSSCLVC 230 (371)
Q Consensus 158 ~~~~HIksLKDlv~Lklt~n~~~~~~------~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-~~~CpvC 230 (371)
+.+.||++||||++|+|++|+++.+. ...++|+||||+++|||+++||||||||||||++||++++ +..||+|
T Consensus 77 ~~~~hI~~LKDl~~l~~~~n~~~~~~~~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c 156 (260)
T PF04641_consen 77 KTFSHIKSLKDLVELKFTKNPSYKEEDKSSGDNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVC 156 (260)
T ss_pred cccccccCccceeeEEeEecCccccccccccccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhccccccccc
Confidence 78899999999999999999876532 3578999999999999999999999999999999999999 8899999
Q ss_pred CCCcCCCceEEecCChHHHHHHHHHHHHHHHhhhhhh
Q 017480 231 HEEFGEMDKILINGNEEEISVLRERMEEEKLKVKEKK 267 (371)
Q Consensus 231 g~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~ak~~~kk 267 (371)
|++|++.|||+|||++||++.|+++|+.++++.+.++
T Consensus 157 ~~~f~~~DiI~Lnp~~ee~~~l~~~~~~~~~~~k~~k 193 (260)
T PF04641_consen 157 GKPFTEEDIIPLNPPEEELEKLRERMEERKAKKKKKK 193 (260)
T ss_pred CCccccCCEEEecCCccHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999888865443
No 3
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=9.9e-24 Score=197.92 Aligned_cols=129 Identities=24% Similarity=0.426 Sum_probs=111.4
Q ss_pred ccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCC--------------------------------------
Q 017480 116 LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLP-------------------------------------- 157 (371)
Q Consensus 116 ~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~-------------------------------------- 157 (371)
.-.|++|.|++||+++| |+|.+|+||++|+||||+|.++..
T Consensus 40 iK~FdcCsLtLqPc~dP-vit~~GylfdrEaILe~ilaqKke~arrlkayekqrr~eed~e~qra~~q~~~~~~eF~~~e 118 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDP-VITPDGYLFDREAILEYILAQKKEIARRLKAYEKQRRAEEDKEEQRAMSQKARRLDEFDQQE 118 (303)
T ss_pred cCCcceeeeecccccCC-ccCCCCeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhHHHHHHHHhhc
Confidence 46799999999999999 788999999999999999976410
Q ss_pred --------------------------------------------------------------------CccCccCCCCCc
Q 017480 158 --------------------------------------------------------------------KQYSYIKGLKDL 169 (371)
Q Consensus 158 --------------------------------------------------------------------~~~~HIksLKDl 169 (371)
|..+.+..||||
T Consensus 119 ~~~~s~al~r~~~~~~ae~~a~~~~~~~~~~sn~~~d~~k~lpsFWlPs~tP~A~atklekP~~~v~CP~s~kplklkdL 198 (303)
T KOG3039|consen 119 STPESSALPRNPDTNSAEDAASFHGANSVSTSNMEEDKLKTLPSFWLPSLTPTAAATKLEKPSTTVVCPVSGKPLKLKDL 198 (303)
T ss_pred cccccccccCCCCcchhhhccCccccCCccccCccccccccccceecCccCchhhhhcccCCCceeeccCCCCccchhhc
Confidence 012566689999
Q ss_pred eeeeeeecCCCCCC----CCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEec
Q 017480 170 INVKLSRVPGAEEN----GDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 170 v~Lklt~n~~~~~~----~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Ln 243 (371)
++++||+-++.+.. ....+|+||||..++++.++++||+||||||..+|++.+ ++++||+||+|.++.|||.|+
T Consensus 199 ~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~Lq 278 (303)
T KOG3039|consen 199 FAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQ 278 (303)
T ss_pred ceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeee
Confidence 99999997754321 134789999999999999999999999999999999998 489999999999999999999
Q ss_pred CC
Q 017480 244 GN 245 (371)
Q Consensus 244 p~ 245 (371)
..
T Consensus 279 rG 280 (303)
T KOG3039|consen 279 RG 280 (303)
T ss_pred cc
Confidence 53
No 4
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7.9e-22 Score=194.81 Aligned_cols=140 Identities=27% Similarity=0.369 Sum_probs=126.7
Q ss_pred hhhccCCCCCCCcchhcccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecC
Q 017480 99 NMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVP 178 (371)
Q Consensus 99 ~~~~~kk~ek~d~~e~~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~ 178 (371)
..|..||++-......++.+|.||+||..|+..| ||+.+|.+|+-.+|+.||-.+..+|..|...+.+|||.|+|..|.
T Consensus 20 ~~~Ggkk~~~~n~~~FkrLP~~hC~lt~~Pfe~P-vC~~dg~vFd~~~Ivp~lkk~g~nP~tG~kl~~~dLIkL~F~Kns 98 (518)
T KOG0883|consen 20 SIYGGKKDTGENRTQFKRLPFNHCSLTMLPFEDP-VCTVDGTVFDLTAIVPWLKKHGTNPITGQKLDGKDLIKLKFHKNS 98 (518)
T ss_pred hhcCCCCCCcccccccccCChhhceeccccccCc-ccccCCcEEeeehhhHHHHHcCCCCCCCCccccccceeeeeccCC
Confidence 3455666664434557789999999999999999 899999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCCCceEEec-CCh
Q 017480 179 GAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGEMDKILIN-GNE 246 (371)
Q Consensus 179 ~~~~~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~~DiI~Ln-p~~ 246 (371)
.+.|+|||+.+.|+..+++|++++.|+|||++|++++. .+..++.++||+..|||+|| |+.
T Consensus 99 -------~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~DiItiQdP~~ 164 (518)
T KOG0883|consen 99 -------EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADIITIQDPNN 164 (518)
T ss_pred -------CCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhceeeecCcch
Confidence 57899999999999999999999999999999999985 67899999999999999999 654
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.84 E-value=5.6e-21 Score=149.91 Aligned_cols=73 Identities=25% Similarity=0.402 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
||||||+. + +++++|++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||++||+||
T Consensus 1 mqi~vk~~--~--~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL-~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--N--THTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATL-GQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--C--EEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCH-HHcCCCCCCEEEEEEecCCC
Confidence 99999995 2 5789999999999999999999 9999999999999999999999 99999999999999999996
No 6
>PTZ00044 ubiquitin; Provisional
Probab=99.81 E-value=7.2e-20 Score=143.43 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
||||||+++|+ ++++++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||.+|++||
T Consensus 1 m~i~vk~~~G~--~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l-~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGK--KQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKL-SDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcH-HHcCCCCCCEEEEEEEccCC
Confidence 89999999997 7788999999999999999999 9999999999999999999999 99999999999999999986
No 7
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.80 E-value=1.2e-19 Score=152.06 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=74.0
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||++.|+ +++|+|++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||++||+|
T Consensus 26 ~~M~I~Vk~l~G~--~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL-~dy~I~~~stL~l~~~l~G 102 (103)
T cd01802 26 DTMELFIETLTGT--CFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCL-NDYNISEGCTLKLVLAMRG 102 (103)
T ss_pred CCEEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEecCC
Confidence 4699999999997 7889999999999999999999 9999999999999999999999 9999999999999999999
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 103 G 103 (103)
T cd01802 103 G 103 (103)
T ss_pred C
Confidence 6
No 8
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=1.6e-19 Score=159.47 Aligned_cols=77 Identities=26% Similarity=0.365 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
|||||+++.++ ++++++..++||..+|++|+.. |||++||||+|+|++|+|+.+| .||+|+..+||||++||+||+
T Consensus 1 m~ifVk~l~~k--ti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtl-SDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGK--TITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred Cccchhhcccc--ceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCcc-ccccccccceEEEEEEecCCc
Confidence 89999999997 7889999999999999999999 9999999999999999999999 999999999999999999886
Q ss_pred C
Q 017480 84 G 84 (371)
Q Consensus 84 ~ 84 (371)
.
T Consensus 78 k 78 (156)
T KOG0004|consen 78 K 78 (156)
T ss_pred c
Confidence 4
No 9
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4e-20 Score=154.16 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
|||||+++.|+ |++|+|++++||.+||+.|+.. |||+++|+|+|+|++|+|+.|| ++|||+.++|||+.+||+||
T Consensus 1 ~~~~~~~~~GK--T~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tl-a~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGK--TITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCc--eEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcc-cccCccchhhhhhhHHHhcC
Confidence 89999999998 8889999999999999999999 9999999999999999999999 99999999999999999987
No 10
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.76 E-value=1e-18 Score=137.03 Aligned_cols=73 Identities=16% Similarity=0.384 Sum_probs=70.1
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
||||++.|+ +++|++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|||++++||+|.+|++||
T Consensus 1 i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL-~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGR--SSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPL-GEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCC--EEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCH-HHcCCCCCCEEEEEEEccCC
Confidence 799999997 7788899999999999999999 9999999999999999999999 99999999999999999986
No 11
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.76 E-value=1.2e-18 Score=136.54 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL 79 (371)
||||||+.+|+ +++|+|++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|||++++||||++|.
T Consensus 1 m~i~vk~~~G~--~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L-~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGR--ECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRL-SDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCH-HHCCCCCCCEEEEEEcC
Confidence 89999999997 7788999999999999999999 9999999999999999999999 99999999999999985
No 12
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.76 E-value=2e-18 Score=134.41 Aligned_cols=75 Identities=27% Similarity=0.373 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
||||||+.+|+ ++.+++++++||++||++|+.. |+|+++|+|+|+|++|+|+.+| ++|+|+++++|||.+|++||
T Consensus 1 m~i~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L-~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCC--EEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcH-HHcCCCCCCEEEEEEEccCC
Confidence 89999999997 6788999999999999999999 9999999999999999999999 99999999999999999997
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.74 E-value=7.5e-18 Score=131.14 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
|||+||+++|+ ++.+++++++||++||++|++. |+|+++|+|+|+|+.|+|+.+| ++|+|+++++|||.+|++||
T Consensus 1 m~i~v~~~~g~--~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl-~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTA-ADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCC--EEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCH-HHcCCCCCCEEEEEEEccCC
Confidence 89999999997 6778899999999999999999 9999999999999999999999 99999999999999999987
No 14
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.73 E-value=8.9e-18 Score=133.87 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=68.7
Q ss_pred eEEEEEcCCCCeeeEEEE-cCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 5 TQIFIKSPSNSLTTLTVG-ANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~-v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
||||||++.|+. +++++ +.+++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|||++++||+|.+|+-
T Consensus 1 M~I~vk~~~G~~-~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL-~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKE-TRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTL-FDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCE-EEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCH-HHcCCCCCCEEEEEEecC
Confidence 999999999972 35785 78899999999999999 9999999999999999999999 999999999999999974
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.68 E-value=9.2e-17 Score=127.73 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=71.4
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.|||+||+..|+ +++|++++++||++||.+|++. |+|+++|+|+|+|+.|+|+ +| ++|||.+++||+|+..++||
T Consensus 1 ~m~I~Vk~~~G~--~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L-~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 1 PMNLNIHSTTGT--RFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KL-QDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred CeEEEEEECCCC--EEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cH-HHcCCCCCCEEEEEeecccc
Confidence 499999999997 6789999999999999999999 9999999999999999998 99 99999999999999999987
No 16
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.66 E-value=1.6e-16 Score=123.15 Aligned_cols=69 Identities=17% Similarity=0.284 Sum_probs=66.1
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
||||+..|+ ++++++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|+++|||||+.|
T Consensus 1 i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l-~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGH--TFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTI-QECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCC--EEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcH-HHcCCCCCCEEEEEeC
Confidence 699999997 7889999999999999999999 9999999999999999999999 9999999999999876
No 17
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.65 E-value=4.2e-16 Score=122.20 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=67.8
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC--CCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ--SLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi--~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
||||||+.+|+ ++++++++++||.+||++|++. |+ |+++|+|+|+|++|+|+.+| ++|||+++++|++.++
T Consensus 1 m~i~vk~~~g~--~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L-~~~~i~~~~~i~~~~~ 74 (77)
T cd01805 1 MKITFKTLKQQ--TFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTL-EEYKIDEKDFVVVMVS 74 (77)
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCH-HHcCCCCCCEEEEEEe
Confidence 99999999997 7889999999999999999999 98 99999999999999999999 9999999999998875
No 18
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.63 E-value=7.3e-16 Score=118.72 Aligned_cols=71 Identities=18% Similarity=0.226 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
|+||||+++|. ++++++++++||++||++|++. |+|++.|+|+|+|++|+|+.+| ++|||+++++|||.+|
T Consensus 1 i~i~vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L-~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQ--THTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETL-SEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcH-HHCCCCCCCEEEEEeC
Confidence 89999999997 6788888899999999999999 9999999999999999999999 9999999999999876
No 19
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.63 E-value=7.2e-16 Score=122.88 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=69.5
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEE--EeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYF--TLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~L--i~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
|+ ||||||+..|+ ++++++++++||++||.+|++. |+|+++|+| +|+|+.|+|+.+| ++|||.+++||+|++
T Consensus 1 ~~--~~i~Vk~~~G~--~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL-~~~gi~~gs~l~l~~ 75 (80)
T cd01792 1 MG--WDLKVKMLGGN--EFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPL-VSQGLGPGSTVLLVV 75 (80)
T ss_pred Cc--eEEEEEeCCCC--EEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCH-HHcCCCCCCEEEEEE
Confidence 66 99999999997 6788999999999999999999 999999999 8999999999999 999999999999999
Q ss_pred e
Q 017480 78 R 78 (371)
Q Consensus 78 r 78 (371)
+
T Consensus 76 ~ 76 (80)
T cd01792 76 Q 76 (80)
T ss_pred E
Confidence 8
No 20
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.62 E-value=8.6e-16 Score=121.16 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=66.5
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
+|+|+||+..|+ .+.+++++++||++||++|++. |+|+++|||+|+|+.|+|+.+| ++|||.+++||||-
T Consensus 1 ~~~i~vkt~~Gk--~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL-~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGK--KVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISL-GDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCH-HHcCCCCCCEEEEE
Confidence 499999999997 7788999999999999999999 9999999999999999999999 99999999999985
No 21
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.61 E-value=2.4e-15 Score=121.99 Aligned_cols=77 Identities=12% Similarity=0.191 Sum_probs=73.2
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..|||||++++|+ ++.+.|..++||..||..++++ |+|+++|+|+|+|++|+++.|+ .+|+|.++++|++.+||+|
T Consensus 10 ~~i~I~v~~~~g~--~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~-~~l~m~d~d~I~v~l~l~G 86 (87)
T cd01763 10 EHINLKVKGQDGN--EVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTP-DDLGMEDGDEIEVMLEQTG 86 (87)
T ss_pred CeEEEEEECCCCC--EEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCH-HHcCCCCCCEEEEEEeccc
Confidence 4599999999997 6778888899999999999999 9999999999999999999999 9999999999999999999
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 87 G 87 (87)
T cd01763 87 G 87 (87)
T ss_pred C
Confidence 7
No 22
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.59 E-value=2e-15 Score=117.94 Aligned_cols=68 Identities=15% Similarity=0.251 Sum_probs=64.3
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
|.||...|. ++++++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+
T Consensus 1 ~~vk~~~G~--~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l-~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGK--DVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRL-QETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCC--EEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCH-HHcCCCCCCEEEEEe
Confidence 468999997 7889999999999999999999 9999999999999999999999 999999999999976
No 23
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.59 E-value=2.9e-15 Score=116.50 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=65.9
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
|.|+||+..|+ .+|++++++||++||++|++. |+|+++|+|+|+|+.|+|+.+| ++|||++++||||++|
T Consensus 1 ~~i~vk~~~g~---~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL-~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK---EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTL-TQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC---EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcH-HHcCCCCCCEEEEEEC
Confidence 57999999996 378888899999999999999 9999999999999999999999 9999999999999986
No 24
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.58 E-value=3e-15 Score=118.21 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=65.2
Q ss_pred CCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 12 PSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 12 ~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
++|+ +++|++++++||++||++|+.. |+|+++|+|+|+|+.|+|+.+| ++|+|.++++|+|.+|++||+
T Consensus 5 l~g~--~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL-~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQ--MLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSL-AYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCe--EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcH-HHcCCCCCCEEEEEEecCCCc
Confidence 4675 7889999999999999999999 9999999999999999999999 999999999999999999976
No 25
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.52 E-value=2e-14 Score=112.26 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=62.1
Q ss_pred EEEEcC-CCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCC-CCcccCCCCCCCCeEEEE
Q 017480 7 IFIKSP-SNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDES-TPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 7 IFVk~~-~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~-~tL~~~~~I~~~sTL~L~ 76 (371)
|+||+. .|. ++.|++++++||++||++|++. |+|+++|+|+|+|++|+|+ .+| ++|||.++++|+|.
T Consensus 1 l~v~~~~~g~--~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L-~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSET--TFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLL-ALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCC--EEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccH-HHcCCCCCCEEEEe
Confidence 579999 786 7889999999999999999999 9999999999999999987 678 99999999999874
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.1e-14 Score=109.93 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
|-|.||+++|+ .+.++++++|+|.+||++|++. ||||.||||+|.|++|.|+.|- .+|++..+|.|||+
T Consensus 1 m~iKvktLt~K--eIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA-~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTA-AHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccc--eEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccH-HHhhhccceeEeeC
Confidence 77999999998 7889999999999999999999 9999999999999999999999 99999999999974
No 27
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.49 E-value=5.1e-14 Score=107.97 Aligned_cols=68 Identities=25% Similarity=0.233 Sum_probs=64.1
Q ss_pred EcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 10 KSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 10 k~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
|+.+|+ ++++++.+++||.+||.+|++. |+|+++|+|+|+|+.|+|+.+| ++|||.++++|+|.+|.|
T Consensus 1 k~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL-~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGK--TFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTL-SDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSE--EEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBT-GGGTTSTTEEEEEEESSE
T ss_pred CCCCCc--EEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcH-HHcCCCCCCEEEEEEecC
Confidence 678886 7889999999999999999999 9999999999999999999999 999999999999999865
No 28
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.43 E-value=3.1e-13 Score=108.38 Aligned_cols=73 Identities=21% Similarity=0.205 Sum_probs=66.4
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C-C-CCCceEEEeCCeeCCCCCCcccCCC--CCCCCeEEEEe
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D-Q-SLSSLYFTLNGKILDESTPLFKNPQ--IAPLSTLYLRQ 77 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g-i-~~~~q~Li~~Gk~L~D~~tL~~~~~--I~~~sTL~L~l 77 (371)
.|.|+||++++...+++|++++++||.+||++|++. + . ++++|+|||.||.|.|+.+| ++|. +..+.||||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL-~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKL-RDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhH-HHHhhcccCCceEEEEe
Confidence 378999999999777888889999999999999987 5 4 57999999999999999999 9996 99999999974
No 29
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.40 E-value=5.1e-13 Score=102.82 Aligned_cols=68 Identities=16% Similarity=0.197 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
|+|+||+. |. ++++++++++||++||++|+.. |+|+++|+|+|+|++|+|+.+| .+|||.++++|+|.
T Consensus 1 i~i~vk~~-g~--~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L-~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GE--SHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETL-DMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CE--EEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcH-HHcCCCCCCEEEEe
Confidence 68999997 75 6788999999999999999999 9999999999999999999999 99999999999885
No 30
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.36 E-value=1.2e-12 Score=97.77 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLS 71 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~s 71 (371)
|||+||+.+ . ++.+++++++||++||++|+.. |+|++.|+|+|+|++|.|+.+| .+|||.+++
T Consensus 1 ~~i~vk~~~-~--~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL-~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-G--TITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTL-ADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-c--eEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCH-HHcCCcCCC
Confidence 899999998 4 6788999999999999999999 9999999999999999999999 999998874
No 31
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=9.2e-12 Score=125.78 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C---CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D---QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g---i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
|+|+||++.|+ ++.|+|++++||.+||.+|+.. | +|+++|+|+|+|+.|+|+.+| .+|+|.++++|++.+.
T Consensus 1 MkItVKtl~g~--~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL-~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQ--KFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTV-REYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCC--EEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcH-HHcCCCCCCEEEEEec
Confidence 89999999997 7889999999999999999999 8 999999999999999999999 9999999999887754
No 32
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.23 E-value=8.4e-12 Score=99.15 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=49.1
Q ss_pred cC-CCCCHHHHHHHHhcc-C--C-CCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 23 AN-QFETLNHLKRSLLSL-D--Q-SLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 23 v~-~~~TV~~lK~~i~~~-g--i-~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
|+ +++||.+||++|++. + + ++++|+|+|+|+.|+|+.|| ++|||++++||||+.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL-~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTL-DFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcH-HHcCCCCCCEEEEEe
Confidence 44 479999999999999 4 6 49999999999999999999 999999999999864
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.14 E-value=1.1e-10 Score=92.59 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=54.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCC-CCCCcccCCCCC-CCCeEEEEe
Q 017480 17 TTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILD-ESTPLFKNPQIA-PLSTLYLRQ 77 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~-D~~tL~~~~~I~-~~sTL~L~l 77 (371)
.++++++++++||++||++|++. |||+++|+| |+|++|. |+.+| ++|||. +|+||+|-+
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL-~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETL-YSHGIRTNGDSAFLYI 74 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCH-HHcCCCCCCCEEEEEe
Confidence 47889999999999999999999 999999999 9999996 66899 999999 779999864
No 34
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.11 E-value=3.6e-10 Score=84.49 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=68.9
Q ss_pred EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
++|++++.|+ ++.+++.+..+|..+|.+|... |++.++|+|.+.|++|+|+.+| .+|+|...++++|..++++
T Consensus 1 ~~~~~~~~gk--~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l-~~~~i~~~~~~~l~~~~~~ 74 (75)
T KOG0001|consen 1 QIFVKTLDGK--TITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTL-ADYNIQEGSTLHLVLSLRG 74 (75)
T ss_pred CEEEEecCCC--EEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcH-HHhCCCCCCEEEEEEecCC
Confidence 5799999997 7889999999999999999999 9999999999999999999999 9999999999999999874
No 35
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.09 E-value=2.1e-10 Score=90.63 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=59.0
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe---CCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL---NGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~---~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
|-||- .|+ +++|++++++||++||++|++. |+|+++|.|+| .|++|.|+.+| .+|+|.++++|.|.
T Consensus 3 i~vk~-~g~--~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L-~~~~i~~g~~i~lm 72 (74)
T cd01813 3 VIVKW-GGQ--EYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKI-SALKLKPNTKIMMM 72 (74)
T ss_pred EEEEE-CCE--EEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCH-HHcCCCCCCEEEEE
Confidence 44554 443 6889999999999999999999 99999999996 99999999999 99999999998874
No 36
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.01 E-value=9.7e-10 Score=82.93 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=60.4
Q ss_pred EEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 9 IKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 9 Vk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
||..+|+ ++.+++++++||.+||.+|+.. |+|++.|+|+|+|++|+|+.+| .+|+|.++++|++..
T Consensus 2 v~~~~~~--~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l-~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGK--TFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTL-SDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCC--EEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCH-HHCCCCCCCEEEEEE
Confidence 6777786 6778888899999999999999 9999999999999999999999 999999999998864
No 37
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.99 E-value=5.9e-10 Score=94.67 Aligned_cols=75 Identities=15% Similarity=0.112 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHh-----cc-CCC--CCceEEEeCCeeCCCCCCcccCCC------CCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLL-----SL-DQS--LSSLYFTLNGKILDESTPLFKNPQ------IAP 69 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~-----~~-gi~--~~~q~Li~~Gk~L~D~~tL~~~~~------I~~ 69 (371)
..-|-.|-.+|. -.=...+++++||++||++|+ .+ ++| +++|+|||+||.|+|+.|| ++|+ +..
T Consensus 4 ~~e~kfrl~dg~-digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL-~d~~~p~g~~~~~ 81 (113)
T cd01814 4 QIEIKFRLYDGS-DIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTV-GECRSPVGDIAGG 81 (113)
T ss_pred cEEEEEEccCCC-ccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcH-HHhCCcccccCCC
Confidence 355777777773 011234667899999999999 55 566 9999999999999999999 9999 777
Q ss_pred CCeEEEEeeec
Q 017480 70 LSTLYLRQRVF 80 (371)
Q Consensus 70 ~sTL~L~lrL~ 80 (371)
.+|+||++|..
T Consensus 82 ~~TmHvvlr~~ 92 (113)
T cd01814 82 VITMHVVVQPP 92 (113)
T ss_pred ceEEEEEecCC
Confidence 89999999976
No 38
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.98 E-value=7.9e-10 Score=85.58 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCC-CceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSL-SSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~-~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
|+|+|++.+|+ .+.+.|.+++||..|.+.+... |+|+ ++++|+|+|++|+++.|+ .+++|.++++|++.+
T Consensus 1 I~i~v~~~~~~--~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~-~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGK--EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTP-EDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSE--EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCH-HHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCH-HHCCCCCCCEEEEEC
Confidence 89999999997 7778888899999999999999 9999 999999999999999999 999999999999864
No 39
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.89 E-value=2.3e-09 Score=89.21 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=55.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCC-CCCCcccCCCCCCCCeEEEEeee
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILD-ESTPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~-D~~tL~~~~~I~~~sTL~L~lrL 79 (371)
..+|+|++++||.+||.+|.+. ++++++|.|+|+|+.|+ |+.|| ++|||.++|.|.|.++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTL-ssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATL-GTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccH-HhcCCCCCCEEEEEecC
Confidence 3578899999999999999999 99999999999999996 56899 99999999999998754
No 40
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.71 E-value=1.8e-08 Score=103.58 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
+-|-||+.+.+ +.+.|..+.||.+||+.|... ++++++++|||+||.|.|+.|| ..|||+++.||||++..-
T Consensus 16 irV~Vkt~~dk---~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL-~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKDK---YEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTL-KQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCcc---eeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhH-HHcCCCCCcEEEEEeccC
Confidence 56899999996 889999999999999999999 9999999999999999999999 999999999999999865
No 41
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.67 E-value=3.2e-08 Score=97.36 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C--CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D--QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g--i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL 79 (371)
|.|+||++.+. ++++++.+++||..+|..|+.. | .|+++|-|||+||.|.|+.++ .+|+|....-|.+.+.=
T Consensus 1 m~lt~KtL~q~--~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv-~Eykv~E~~fiVvMlsK 75 (340)
T KOG0011|consen 1 MKLTVKTLKQQ--TFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTV-GEYKVKEKKFIVVMLSK 75 (340)
T ss_pred CeeEeeeccCc--eeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcch-hhhccccCceEEEEEec
Confidence 89999999996 7899999999999999999999 8 999999999999999999999 99999999977666543
No 42
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.55 E-value=3.3e-07 Score=74.04 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEE-EeCCe-----eC-CCCCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYF-TLNGK-----IL-DESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~L-i~~Gk-----~L-~D~~tL~~~~~I~~~sTL~L~ 76 (371)
+.|+|.+... ....+..++++.||++||++|+.. |+|++.|+| +|.|+ .| +|+.+| +.||+.++.+||++
T Consensus 2 v~v~i~~~~~-~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L-~~y~~~dg~~IhVv 79 (84)
T cd01789 2 VTVNITSSAD-SFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALL-GSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEEeCCC-ceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEe-eeccCCCCCEEEEE
Confidence 4577777443 234455588899999999999999 999999999 58999 57 567788 99999999999985
No 43
>PLN02560 enoyl-CoA reductase
Probab=98.45 E-value=4.3e-07 Score=89.87 Aligned_cols=70 Identities=21% Similarity=0.225 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCeee-EEEEcCCCCCHHHHHHHHhcc-CC-CCCceEEEeC---C----eeCCCCCCcccCCCCCCCCeEE
Q 017480 5 TQIFIKSPSNSLTT-LTVGANQFETLNHLKRSLLSL-DQ-SLSSLYFTLN---G----KILDESTPLFKNPQIAPLSTLY 74 (371)
Q Consensus 5 MQIFVk~~~g~~~t-~~l~v~~~~TV~~lK~~i~~~-gi-~~~~q~Li~~---G----k~L~D~~tL~~~~~I~~~sTL~ 74 (371)
|+|.|++.+|+... .+|+++++.||++||.+|+.+ ++ ++++|||++. | +.|+|+.+| .++||.+++||+
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL-~d~gv~~gstLy 79 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSL-KDYGLGDGGTVV 79 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCH-HhcCCCCCceEE
Confidence 89999999997211 278999999999999999999 75 8999999983 4 488999999 999999999876
Q ss_pred E
Q 017480 75 L 75 (371)
Q Consensus 75 L 75 (371)
+
T Consensus 80 ~ 80 (308)
T PLN02560 80 F 80 (308)
T ss_pred E
Confidence 5
No 44
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.39 E-value=5.4e-07 Score=67.67 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=43.5
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~L 242 (371)
|+||||+..|..- ++.+|||||+.+++.+.- ...||+|+++++.+|+|++
T Consensus 2 ~~Cpi~~~~~~~P----v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 2 FLCPISLEVMKDP----VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred cCCcCCCCcCCCC----EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeC
Confidence 7899999999863 345999999999999873 5689999999999999885
No 45
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.31 E-value=1.6e-06 Score=73.85 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=59.4
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCC-------CCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQI-------APLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I-------~~~sTL~L~ 76 (371)
|.|-||-... ||=+++.+++||-+||..|+.. ..|+++|+|+-.+..|+|+.|| ++||+ +.-.+|-|.
T Consensus 3 vFlmIrR~KT---TiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL-~d~g~t~~~akaq~pA~vgLa 78 (119)
T cd01788 3 VFLMIRRHKT---TIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTL-GDCGFTSQTARPQAPATVGLA 78 (119)
T ss_pred eEEEEEecce---EEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccH-HHcCccccccccCCCCeEEEE
Confidence 5555665554 6889999999999999999999 8999999999888889999999 99999 556777666
Q ss_pred ee
Q 017480 77 QR 78 (371)
Q Consensus 77 lr 78 (371)
+|
T Consensus 79 ~r 80 (119)
T cd01788 79 FR 80 (119)
T ss_pred Ee
Confidence 66
No 46
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=98.22 E-value=4.1e-06 Score=75.71 Aligned_cols=84 Identities=29% Similarity=0.325 Sum_probs=63.0
Q ss_pred eEEEEEcCCCC--eeeEEEEcCCCCCHHHHHHHHhcc-CCCCCc-eEEEeC-CeeCC--CCCCcccCCCCC----CCCeE
Q 017480 5 TQIFIKSPSNS--LTTLTVGANQFETLNHLKRSLLSL-DQSLSS-LYFTLN-GKILD--ESTPLFKNPQIA----PLSTL 73 (371)
Q Consensus 5 MQIFVk~~~g~--~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~-q~Li~~-Gk~L~--D~~tL~~~~~I~----~~sTL 73 (371)
|||||++++|. ..++.+.+..+.||++|+.+|.+. +++... ++|++. +++|. ++..+ ..+.-. ...+|
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~-s~l~~~~~~~~~~~l 79 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPL-SSLLSSSQDSDFITL 79 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccH-HhhccCcCCCCceEE
Confidence 79999999993 236778888899999999999999 887776 567664 56663 44444 222211 34579
Q ss_pred EEEeeecCCCCCCccc
Q 017480 74 YLRQRVFGGGGDGGAT 89 (371)
Q Consensus 74 ~L~lrL~G~~~~~~si 89 (371)
+|.+||+||++.=||.
T Consensus 80 ~l~~rl~GGKGGFGs~ 95 (162)
T PF13019_consen 80 RLSLRLRGGKGGFGSQ 95 (162)
T ss_pred EEEEeccCCCccHHHH
Confidence 9999999999888886
No 47
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.15 E-value=5.3e-06 Score=66.95 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeC----C---eeC-CCCCCcccCCCCCCCCeEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLN----G---KIL-DESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~----G---k~L-~D~~tL~~~~~I~~~sTL~L 75 (371)
..|+|.....+.+.....++.+.||++||.+|+.. |+|++.|+|.+- | ..| +|+.+| +.||+.++.+||+
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L-~~y~~~dg~~i~V 80 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATL-GSYGIKDGMRIHV 80 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBC-CHHT-STTEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEe-ecCCCCCCCEEEE
Confidence 35777777664345667777788999999999999 999999999876 1 224 467899 9999999999987
Q ss_pred E
Q 017480 76 R 76 (371)
Q Consensus 76 ~ 76 (371)
.
T Consensus 81 ~ 81 (87)
T PF14560_consen 81 V 81 (87)
T ss_dssp E
T ss_pred E
Confidence 4
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.14 E-value=3.3e-06 Score=67.89 Aligned_cols=72 Identities=21% Similarity=0.221 Sum_probs=43.9
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC---eeC--CCCCCcccCCCCCCCCeEE
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG---KIL--DESTPLFKNPQIAPLSTLY 74 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G---k~L--~D~~tL~~~~~I~~~sTL~ 74 (371)
|...|-|=||+.+| +..|++++++||++|+++|++. ++|.+.|.|+.+- ..| +++.+| +++||..|+.|+
T Consensus 1 ~~~~milRvrS~dG---~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl-~~lglkHGdmly 76 (80)
T PF11543_consen 1 MASSMILRVRSKDG---MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTL-SSLGLKHGDMLY 76 (80)
T ss_dssp -----EEEEE-SSE---EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CC-CCT---TT-EEE
T ss_pred CCccEEEEEECCCC---CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCH-HHcCCCCccEEE
Confidence 88999999999999 5789999999999999999999 9999999885432 234 467899 999999999887
Q ss_pred EE
Q 017480 75 LR 76 (371)
Q Consensus 75 L~ 76 (371)
|.
T Consensus 77 L~ 78 (80)
T PF11543_consen 77 LK 78 (80)
T ss_dssp --
T ss_pred Ee
Confidence 74
No 49
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.2e-06 Score=93.18 Aligned_cols=68 Identities=15% Similarity=0.291 Sum_probs=62.4
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
+.||+++.++++++|.. .+||.++|.+|.+. .|+.+-|||||+|+-|.|+.++ ++|+| .|-+|||+=|
T Consensus 5 v~vktld~r~~t~~ig~--q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~v-q~~~v-dgk~~hlver 73 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGA--QMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKV-QEYNV-DGKVIHLVER 73 (1143)
T ss_pred eeeeecccceeEEEech--HHHHHHHHHHHHHhcccccccceeeecceeeccchhh-hhccC-CCeEEEeecc
Confidence 89999999866655555 77999999999999 9999999999999999999999 99999 8999999977
No 50
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.08 E-value=1.9e-05 Score=67.35 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=50.8
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc---C-----CCCCceEEEeCCeeCCCCCCcccCCCCCCCC------e
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL---D-----QSLSSLYFTLNGKILDESTPLFKNPQIAPLS------T 72 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~---g-----i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~s------T 72 (371)
|-.+-.+|. -+..+..++++||++||++|... + ..+++.||||.||-|+|+.+| .++.++.+. +
T Consensus 5 lkf~l~~G~-d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL-~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 5 LKFRLADGK-DIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTL-SDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEETTS--EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBT-GGGT--TTSETT--EE
T ss_pred EEEEEeCCC-cccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcH-HHhCCCCCCCCCCCEE
Confidence 444555785 13455666689999999999855 1 267889999999999999999 999988766 5
Q ss_pred EEEEeeec
Q 017480 73 LYLRQRVF 80 (371)
Q Consensus 73 L~L~lrL~ 80 (371)
+||++|-.
T Consensus 83 mHlvvrp~ 90 (111)
T PF13881_consen 83 MHLVVRPN 90 (111)
T ss_dssp EEEEE-SS
T ss_pred EEEEecCC
Confidence 78887755
No 51
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.03 E-value=1.1e-05 Score=63.85 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=53.1
Q ss_pred EEEEEcCC-CCeeeEEEEcCCCCCHHHHHHHHhcc-C-CCCCceEEE--eCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480 6 QIFIKSPS-NSLTTLTVGANQFETLNHLKRSLLSL-D-QSLSSLYFT--LNGKILDESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 6 QIFVk~~~-g~~~t~~l~v~~~~TV~~lK~~i~~~-g-i~~~~q~Li--~~Gk~L~D~~tL~~~~~I~~~sTL~L 75 (371)
+|+++.-+ -.+..+.++ +++.||.+||..|... + ++++.|||+ +.|+.|.|+.+| .+|||.+++||++
T Consensus 2 ~i~~~~~~~k~~~~~~~~-~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL-~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVS-SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTL-VDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccC-CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccH-hhcCCCCCCEEEE
Confidence 45666555 332223343 4678999999999988 5 689999995 899999999999 9999999999876
No 52
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.99 E-value=2.8e-05 Score=54.40 Aligned_cols=59 Identities=24% Similarity=0.201 Sum_probs=53.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
...+.+.+..||.+|+.+|..+ |++++.|.|.++|..+.+...+ .++++..+++|++..
T Consensus 9 ~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~ 68 (69)
T cd00196 9 TVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTL-EDYGLQDGDELVLVP 68 (69)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcH-HHcCCCCCCEEEEEe
Confidence 5677888889999999999999 9999999999999999988877 789999999998864
No 53
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=2.6e-05 Score=76.89 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=60.6
Q ss_pred eEEEEEcC-CCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSP-SNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~-~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
|-+||+-- +|..++++|+|+.+..|.+||+-++.+ |+|++|.++||+||.|.++.++ +.+.|..-|.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv-~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTV-QNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCcee-ecccccccchhhhh
Confidence 55666533 445568899999999999999999999 9999999999999999999999 98888777877765
No 54
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.6e-05 Score=72.66 Aligned_cols=56 Identities=21% Similarity=0.466 Sum_probs=46.5
Q ss_pred CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480 185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~L 242 (371)
..+.|-|||+...+.-+.. +--.|||||+..|+++.- ...||+|+++.+..+++.|
T Consensus 128 ~~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI 185 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRI 185 (187)
T ss_pred cccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhhheec
Confidence 3567999999988876544 336799999999999984 5799999999998888776
No 55
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=6.9e-06 Score=88.38 Aligned_cols=53 Identities=21% Similarity=0.552 Sum_probs=45.4
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHh---hcCCCCCCCCCcCCCceEEec
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV---KSSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev---k~~~CpvCg~~f~~~DiI~Ln 243 (371)
+...||+|...+ +=++|..||||||+.|++.. +...||.|+.+|...||.+|.
T Consensus 642 ~~LkCs~Cn~R~----Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 642 ELLKCSVCNTRW----KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred hceeCCCccCch----hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 567999997433 45788999999999999986 578999999999999998873
No 56
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.64 E-value=4.9e-05 Score=57.46 Aligned_cols=33 Identities=27% Similarity=0.596 Sum_probs=25.6
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHH
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHAL 151 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~L 151 (371)
=..|.||++||.+||++-.-|+.|+|++|++||
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i 43 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYI 43 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHC
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHH
Confidence 367999999999998886669999999999998
No 57
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00052 Score=57.32 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=68.6
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
..+|-|+++++. ++.+-+--..++.-|....+.+ |++.+++||.|+|+++.+..|= .+.+...+..|++.....||
T Consensus 20 hi~LKV~gqd~~--~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP-~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 20 HINLKVKGQDGS--VVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTP-ADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred eEEEEEecCCCC--EEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCCh-hhhCCcCCcEEEEEeecccC
Confidence 478999999886 4555666677999999999999 9999999999999999988888 89999999999999999887
Q ss_pred CC
Q 017480 83 GG 84 (371)
Q Consensus 83 ~~ 84 (371)
..
T Consensus 97 ~~ 98 (99)
T KOG1769|consen 97 FG 98 (99)
T ss_pred CC
Confidence 53
No 58
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=9.3e-05 Score=73.22 Aligned_cols=49 Identities=22% Similarity=0.448 Sum_probs=41.8
Q ss_pred eEcCCcccc--cCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCc
Q 017480 189 FQCPITGLE--FNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMD 238 (371)
Q Consensus 189 ~~CPVT~~e--~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~D 238 (371)
+.||+|... +|...+|.+. +|||+||..|+..+- ...||+|++++...+
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 579999985 7777788877 999999999999963 458999999988766
No 59
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.44 E-value=0.00017 Score=56.67 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=38.3
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEe
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~L 242 (371)
..|+||||+.-|..= ++-+|||+|...++...- ...||.|+.+++..|+|+-
T Consensus 3 ~~f~CpIt~~lM~dP----Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 3 DEFLCPITGELMRDP----VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GGGB-TTTSSB-SSE----EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred cccCCcCcCcHhhCc----eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence 358999999999873 245899999999999873 5789999999999888763
No 60
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.32 E-value=0.00042 Score=51.82 Aligned_cols=53 Identities=23% Similarity=0.323 Sum_probs=42.7
Q ss_pred ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeee
Q 017480 120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVK 173 (371)
Q Consensus 120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lk 173 (371)
..|+||++++.+||+. ..|+.|.+++|.+|+.....-|..+...+.+||+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~-~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~ 54 (63)
T smart00504 2 FLCPISLEVMKDPVIL-PSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNL 54 (63)
T ss_pred cCCcCCCCcCCCCEEC-CCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCH
Confidence 3699999999999655 7899999999999998755556666666777777653
No 61
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.15 E-value=0.00024 Score=50.81 Aligned_cols=33 Identities=27% Similarity=0.575 Sum_probs=19.5
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhhc
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS 224 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~ 224 (371)
|||+.. |+.....-++-+|||||+++||+.+..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~ 33 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSK 33 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHh
Confidence 999988 866444444445999999999999853
No 62
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.14 E-value=0.00049 Score=64.00 Aligned_cols=57 Identities=23% Similarity=0.486 Sum_probs=46.6
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh------------------cCCCCCCCCCcCCCceEEecCCh
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK------------------SSSCLVCHEEFGEMDKILINGNE 246 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk------------------~~~CpvCg~~f~~~DiI~Lnp~~ 246 (371)
.+.+.|||+...+..- ++-+|||+|+..||.+.- ...||+|..++...++|+|-+..
T Consensus 16 ~~~~~CpICld~~~dP----VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg 90 (193)
T PLN03208 16 GGDFDCNICLDQVRDP----VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG 90 (193)
T ss_pred CCccCCccCCCcCCCc----EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence 4578999999887642 335899999999998752 24799999999999999998754
No 63
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.11 E-value=0.00038 Score=49.43 Aligned_cols=42 Identities=31% Similarity=0.736 Sum_probs=35.0
Q ss_pred EcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCC
Q 017480 190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHE 232 (371)
Q Consensus 190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~ 232 (371)
.||+....+++..+ .+|-+|||+|.+++++.+. ...||+|++
T Consensus 1 ~C~~C~~~~~~~~~-~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERR-PRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCC-eEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 38999988854444 6677999999999999998 789999975
No 64
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=96.76 E-value=0.0014 Score=54.60 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=48.7
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe-CC-eeCCCCCCcccCCCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL-NG-KILDESTPLFKNPQIA 68 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~-~G-k~L~D~~tL~~~~~I~ 68 (371)
|.|-||--.. +|-+++.++.||-+||..|+.. .-|++.|+|+. .- ..|+|+.+| +++|+.
T Consensus 3 ~f~~VrR~kt---tif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL-~d~gft 65 (110)
T KOG4495|consen 3 VFLRVRRHKT---TIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTL-GDCGFT 65 (110)
T ss_pred eeeeeeecce---eEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchh-hhcccc
Confidence 4455555444 6789999999999999999999 89999999987 33 456899999 999764
No 65
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.66 E-value=0.002 Score=50.64 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=37.5
Q ss_pred ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc-CCCCCccCccCCCCCceee
Q 017480 120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLS-KNLPKQYSYIKGLKDLINV 172 (371)
Q Consensus 120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~-k~~~~~~~HIksLKDlv~L 172 (371)
..|.||++.+.+||+. ..|+.|++++|..||.. ....+..+...+..||++.
T Consensus 5 f~CpIt~~lM~dPVi~-~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn 57 (73)
T PF04564_consen 5 FLCPITGELMRDPVIL-PSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN 57 (73)
T ss_dssp GB-TTTSSB-SSEEEE-TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred cCCcCcCcHhhCceeC-CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence 5799999999999766 89999999999999998 3444555666666666653
No 66
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.65 E-value=0.0023 Score=46.39 Aligned_cols=43 Identities=21% Similarity=0.580 Sum_probs=34.8
Q ss_pred eEcCCcccccCCceeEEEEeccCcc-ccHHHHHHh--hcCCCCCCCCCcC
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEV--KSSSCLVCHEEFG 235 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkev--k~~~CpvCg~~f~ 235 (371)
..|+|....+.. +++.||||+ |...++.++ ....||+|..+++
T Consensus 3 ~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRD----VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSS----EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCCccCCccCCc----eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 469999887543 788899999 999999998 4689999999875
No 67
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.60 E-value=0.0018 Score=45.64 Aligned_cols=40 Identities=40% Similarity=0.794 Sum_probs=32.4
Q ss_pred EcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCC
Q 017480 190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVC 230 (371)
Q Consensus 190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvC 230 (371)
.|||+..+|.....++.+. |||+|...++.+.- ...||+|
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~C 43 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVC 43 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTT
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCcc
Confidence 3999999997766666554 99999999999973 5789998
No 68
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.57 E-value=0.0019 Score=48.80 Aligned_cols=43 Identities=33% Similarity=0.597 Sum_probs=28.0
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCH 231 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg 231 (371)
...+.||||...|.. =|--..|||||..+|+.++- ...||+-|
T Consensus 9 ~~~~~CPiT~~~~~~---PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 9 TISLKCPITLQPFED---PVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp B--SB-TTTSSB-SS---EEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred EeccCCCCcCChhhC---CcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 456899999999975 34456899999999999984 46899943
No 69
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.48 E-value=0.001 Score=49.94 Aligned_cols=34 Identities=21% Similarity=0.522 Sum_probs=30.5
Q ss_pred EEeccCccccHHHHHHhhcCCCCCCCCCcCCCce
Q 017480 206 AMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDK 239 (371)
Q Consensus 206 ~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~Di 239 (371)
.+.||||+++..++.--.-+.||.||.+|+..|+
T Consensus 21 ~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 21 TVLPCGHLICDNCFPGERYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ccccccceeeccccChhhccCCCCCCCcccCCCC
Confidence 3469999999999999999999999999988764
No 70
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.46 E-value=0.0022 Score=63.53 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=42.2
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCceEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~DiI~ 241 (371)
.+-|+|||.....+.-..-+. -.||||+|.+|+..+. +.+||.|-..-.-+|++-
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~m-l~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~~r 393 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVM-LECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENILR 393 (396)
T ss_pred cceeeccccHhhhcccCCCee-eeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhhhc
Confidence 467999999887765444444 4699999999999985 468999987666666553
No 71
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=96.30 E-value=0.0053 Score=42.24 Aligned_cols=37 Identities=30% Similarity=0.684 Sum_probs=29.1
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCC
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVC 230 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvC 230 (371)
|||....+.+ -+++-+|||+|...++.+.. ...||+|
T Consensus 1 C~iC~~~~~~---~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD---PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS---EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC---cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8899888876 45678999999999999874 5688887
No 72
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.003 Score=64.21 Aligned_cols=53 Identities=28% Similarity=0.468 Sum_probs=38.9
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCce
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDK 239 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~Di 239 (371)
.+.|+|||.+..-+.-..=+-| .||||+|..|+..+. +.+||.|-..-..+|.
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L-~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~ 389 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMML-ICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDT 389 (394)
T ss_pred cceeecccchhhccCCCCCeee-eccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhc
Confidence 5679999998876554333333 599999999999985 3689999765544444
No 73
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.22 E-value=0.0062 Score=47.33 Aligned_cols=58 Identities=24% Similarity=0.200 Sum_probs=42.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480 17 TTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L 75 (371)
+...+.++++.|+.+|=+....+ |+.+++..|.|++++|+-+.++ --.||+++++|+|
T Consensus 7 rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~-R~snL~n~akLeL 65 (65)
T PF11470_consen 7 RRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPF-RLSNLPNNAKLEL 65 (65)
T ss_dssp -EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BH-HHH---SS-EEEE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccce-eecCCCCCCEEeC
Confidence 46788999999999999998888 9999999999999999988877 8899999999986
No 74
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0043 Score=60.78 Aligned_cols=54 Identities=19% Similarity=0.404 Sum_probs=43.4
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEec
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~Ln 243 (371)
.+.+.|-+|...+.+- -.-||||+||..|+.+.. ...||+|-.+|...++|.|.
T Consensus 237 ~a~~kC~LCLe~~~~p----SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~Lr 292 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNP----SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKVICLR 292 (293)
T ss_pred CCCCceEEEecCCCCC----CcCcCcchHHHHHHHHHHccccCCCcccccCCCcceeeec
Confidence 4567888887766431 125899999999999985 35799999999999999874
No 75
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.017 Score=59.92 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=55.4
Q ss_pred EEEEcCCCCeeeEEEE-cCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480 7 IFIKSPSNSLTTLTVG-ANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~-v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L 75 (371)
+-||- .|+ .|.++ ++.++|+..+|++|+++ |++|+-|.+.+-|.+|.|+-.+ +..+|.++.||+|
T Consensus 6 v~VKW-~gk--~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~-~al~iKpn~~lmM 72 (473)
T KOG1872|consen 6 VIVKW-GGK--KYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDW-GALQIKPNETLMM 72 (473)
T ss_pred Eeeee-cCc--cccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccc-cccccCCCCEEEe
Confidence 44554 444 46666 88899999999999999 9999999999999999988666 7889999999987
No 76
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=95.74 E-value=0.01 Score=40.20 Aligned_cols=41 Identities=29% Similarity=0.674 Sum_probs=31.7
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCc
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEF 234 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f 234 (371)
|||....+. ..+.+.+|||+|...++++.. ...||+|...+
T Consensus 2 C~iC~~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 2 CPICLEEFR---EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCcCchhhh---CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 888888772 345566799999999999874 45799998753
No 77
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.68 E-value=0.009 Score=61.36 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=39.1
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~ 237 (371)
...+.||||...|..- ++-+|||+||..|+.+.- ...||+|..++...
T Consensus 24 e~~l~C~IC~d~~~~P----vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP----VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccCCCcCchhhhCc----cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 4568999999888642 257999999999999864 34799999999765
No 78
>PHA02929 N1R/p28-like protein; Provisional
Probab=95.67 E-value=0.0083 Score=57.70 Aligned_cols=47 Identities=26% Similarity=0.493 Sum_probs=38.4
Q ss_pred eEcCCcccccCCc----eeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcC
Q 017480 189 FQCPITGLEFNGK----YRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFG 235 (371)
Q Consensus 189 ~~CPVT~~e~ng~----~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~ 235 (371)
..|||+..++... .+|.++-+|||+|+..|+.+.. ...||+|-.+|.
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 5799999987542 2467788999999999999874 468999998876
No 79
>PHA02926 zinc finger-like protein; Provisional
Probab=95.44 E-value=0.0082 Score=57.12 Aligned_cols=48 Identities=17% Similarity=0.440 Sum_probs=39.4
Q ss_pred eeEcCCccccc-----CCceeEEEEeccCccccHHHHHHhhcC--------CCCCCCCCcC
Q 017480 188 RFQCPITGLEF-----NGKYRFVAMRTCGHVLSTKALKEVKSS--------SCLVCHEEFG 235 (371)
Q Consensus 188 ~~~CPVT~~e~-----ng~~rfV~L~~CG~V~Se~alkevk~~--------~CpvCg~~f~ 235 (371)
...|+|+.... .+..+|-.|.+|||+|+-.|++..... .||+|-..|.
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 35799998764 234579999999999999999998743 3999999886
No 80
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.28 E-value=0.04 Score=45.98 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=38.0
Q ss_pred eeeEEEEcC--CCCCHHHHHHHHhcc-C--CCCCceEEEeCCeeCCCCCCc
Q 017480 16 LTTLTVGAN--QFETLNHLKRSLLSL-D--QSLSSLYFTLNGKILDESTPL 61 (371)
Q Consensus 16 ~~t~~l~v~--~~~TV~~lK~~i~~~-g--i~~~~q~Li~~Gk~L~D~~tL 61 (371)
+.-+.|+++ .+.||..||..|.+. + ..-.-+||||+|+.|.|++.|
T Consensus 11 ipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l 61 (97)
T PF10302_consen 11 IPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDL 61 (97)
T ss_pred CCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchh
Confidence 345677777 789999999999998 4 455567889999999999877
No 81
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.14 E-value=0.12 Score=40.77 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=53.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCc-eEEE--eCCeeCCCC--CCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSS-LYFT--LNGKILDES--TPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~-q~Li--~~Gk~L~D~--~tL~~~~~I~~~sTL~L~ 76 (371)
..|-||-.+|. .+...-..++||.+|-+.|... ..+... +.|+ |--+.|.++ .+| .+.|+.+.++|+|.
T Consensus 7 ~~I~vRlpdG~--~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl-~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 7 VRIQVRLPDGS--RLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTL-EEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEEETTST--EEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBT-CCCTTSSCEEEEEE
T ss_pred EEEEEECCCCC--EEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccH-HHhcCCCCeEEEEE
Confidence 57889999997 4555566688999999999888 444443 7885 667888644 599 99999999998763
No 82
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=95.08 E-value=0.13 Score=40.35 Aligned_cols=66 Identities=23% Similarity=0.321 Sum_probs=50.8
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
|+|.+- |+ .+++.+..||++| |.+.|++.....+..||.++..+. |++.-+.+++-|. .+|..|||
T Consensus 3 m~i~~n---g~----~~e~~~~~tv~dL---L~~l~~~~~~vav~vNg~iVpr~~--~~~~~l~~gD~ie-vv~~v~GG 68 (68)
T COG2104 3 MTIQLN---GK----EVEIAEGTTVADL---LAQLGLNPEGVAVAVNGEIVPRSQ--WADTILKEGDRIE-VVRVVGGG 68 (68)
T ss_pred EEEEEC---CE----EEEcCCCCcHHHH---HHHhCCCCceEEEEECCEEccchh--hhhccccCCCEEE-EEEeecCC
Confidence 676664 64 6778777899998 666788899999999999998654 3677788888786 56767665
No 83
>PRK07440 hypothetical protein; Provisional
Probab=95.05 E-value=0.15 Score=39.80 Aligned_cols=70 Identities=23% Similarity=0.343 Sum_probs=51.8
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
|-..|+|.| +|+ .+++.+..||.+| |.+.++++....+-+||..+.-+. |++.-|.+++.|++ ++..
T Consensus 1 ~~~~m~i~v---NG~----~~~~~~~~tl~~l---L~~l~~~~~~vav~~N~~iv~r~~--w~~~~L~~gD~IEI-v~~v 67 (70)
T PRK07440 1 MSNPITLQV---NGE----TRTCSSGTSLPDL---LQQLGFNPRLVAVEYNGEILHRQF--WEQTQVQPGDRLEI-VTIV 67 (70)
T ss_pred CCCceEEEE---CCE----EEEcCCCCCHHHH---HHHcCCCCCeEEEEECCEEeCHHH--cCceecCCCCEEEE-EEEe
Confidence 667899998 554 4666677899988 455578888889999999987432 36677899999986 4555
Q ss_pred CCC
Q 017480 81 GGG 83 (371)
Q Consensus 81 G~~ 83 (371)
|||
T Consensus 68 ~GG 70 (70)
T PRK07440 68 GGG 70 (70)
T ss_pred cCC
Confidence 554
No 84
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.019 Score=58.78 Aligned_cols=69 Identities=20% Similarity=0.388 Sum_probs=50.8
Q ss_pred EcCCcccc--cCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCCCceEEecCC--hHHHHHHHHHHHHH
Q 017480 190 QCPITGLE--FNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGEMDKILINGN--EEEISVLRERMEEE 259 (371)
Q Consensus 190 ~CPVT~~e--~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~~DiI~Lnp~--~ee~~~l~~rm~~~ 259 (371)
.||++..+ |.|.|++|.++ |||.|+..|++..- .+.||.|..+-...+|-++.-- -++.+.-++|+|++
T Consensus 6 tcpiclds~~~~g~hr~vsl~-cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa~dt~~~~rle~q 82 (463)
T KOG1645|consen 6 TCPICLDSYTTAGNHRIVSLQ-CGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQAMDTENEQRLEEQ 82 (463)
T ss_pred cCceeeeeeeecCceEEeeec-ccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 69998766 78999999886 99999999999862 4799999998888877666531 13333444455443
No 85
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=94.91 E-value=0.1 Score=41.78 Aligned_cols=63 Identities=11% Similarity=0.194 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC----e-eCCCCCCcccCCCCCCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG----K-ILDESTPLFKNPQIAPLS 71 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G----k-~L~D~~tL~~~~~I~~~s 71 (371)
.|+-|+-... ...++-|+|.++|-.||++|... +++- +|||.|.- + .|.+..+| ++|||-..-
T Consensus 1 iqVtV~q~g~--~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sL-A~yGiFs~~ 69 (80)
T cd01811 1 IQVTVEQTGY--SDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSL-ADYGIFSKT 69 (80)
T ss_pred CEEEeeecCC--CceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccH-hhhcceecc
Confidence 4777876555 37789999999999999999998 8764 99999952 3 34788899 999997444
No 86
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.012 Score=45.89 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=56.4
Q ss_pred EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480 6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L 75 (371)
|+.+..--|+ -+.+.+.+++||+++|.-|+++ |-.++..+|---+..+.|.-+| ++|.|..+..|+|
T Consensus 3 ev~~nDrLGK--KVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L-~dyeihdg~~lel 70 (73)
T KOG3493|consen 3 EVVLNDRLGK--KVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITL-SDYEIHDGMNLEL 70 (73)
T ss_pred eehhhhhcCc--eEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccce-eeEEeccCccEEE
Confidence 4555555565 5688999999999999999999 9888999987677778899999 9999999988876
No 87
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=94.71 E-value=0.04 Score=37.83 Aligned_cols=37 Identities=32% Similarity=0.708 Sum_probs=29.8
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCC
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVC 230 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvC 230 (371)
|||....+... +.+.+|||.|...++.++- ...||.|
T Consensus 1 C~iC~~~~~~~---~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP---VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE---EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC---CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 78888877653 3789999999999999874 3578877
No 88
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=94.51 E-value=0.18 Score=38.30 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=41.9
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
|+|+| +|+ .+++....|+.+||.++.. +.-.++|+|=|..++..| .+++.|.+.
T Consensus 1 M~I~v---N~k----~~~~~~~~tl~~lr~~~k~-----~~DI~I~NGF~~~~d~~L------~e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKV---NEK----EIETEENTTLFELRKESKP-----DADIVILNGFPTKEDIEL------KEGDEVFLI 54 (57)
T ss_pred CEEEE---CCE----EEEcCCCcCHHHHHHhhCC-----CCCEEEEcCcccCCcccc------CCCCEEEEE
Confidence 88998 554 6777778899999998766 444789999999877554 777877664
No 89
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=94.19 E-value=0.042 Score=35.70 Aligned_cols=36 Identities=25% Similarity=0.673 Sum_probs=26.2
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCC
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVC 230 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvC 230 (371)
|||..... +...+.+|||+|...+++..- ...||+|
T Consensus 1 C~iC~~~~----~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL----KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC----CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 66766552 234556899999999999873 3678877
No 90
>PRK06437 hypothetical protein; Provisional
Probab=93.71 E-value=0.43 Score=36.95 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=42.2
Q ss_pred EEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 19 LTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 19 ~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
..+++++..||++| |..+|+++....+..||..+..+. -|.++..|.+ ++..|||
T Consensus 13 ~~~~i~~~~tv~dL---L~~Lgi~~~~vaV~vNg~iv~~~~------~L~dgD~Vei-v~~V~GG 67 (67)
T PRK06437 13 KTIEIDHELTVNDI---IKDLGLDEEEYVVIVNGSPVLEDH------NVKKEDDVLI-LEVFSGG 67 (67)
T ss_pred eEEEcCCCCcHHHH---HHHcCCCCccEEEEECCEECCCce------EcCCCCEEEE-EecccCC
Confidence 36777778899998 555688889999999999998554 3578899975 5555655
No 91
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=93.68 E-value=0.43 Score=36.13 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=46.8
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
|+|.| +|+ .+++.+..||.+| |...+++.....+.++|..+.-+. |.+.-|+++..|++ ++..|||
T Consensus 1 m~i~v---NG~----~~~~~~~~tl~~l---L~~l~~~~~~vav~vNg~iv~r~~--~~~~~l~~gD~vei-~~~vgGG 66 (66)
T PRK05659 1 MNIQL---NGE----PRELPDGESVAAL---LAREGLAGRRVAVEVNGEIVPRSQ--HASTALREGDVVEI-VHALGGG 66 (66)
T ss_pred CEEEE---CCe----EEEcCCCCCHHHH---HHhcCCCCCeEEEEECCeEeCHHH--cCcccCCCCCEEEE-EEEecCC
Confidence 67777 564 4566667898888 555688888888999998776332 24556899999986 4555554
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.64 E-value=0.076 Score=53.40 Aligned_cols=59 Identities=14% Similarity=0.356 Sum_probs=45.1
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEecCChHHH
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILINGNEEEI 249 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~Lnp~~ee~ 249 (371)
||+|..+|.=.-+=++--+||.-+|.=|+..++ ...||.|-..|++++|-..--+.||+
T Consensus 17 cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~~~s~ee~ 78 (480)
T COG5175 17 CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYVTLSPEEL 78 (480)
T ss_pred CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEEecCHHHH
Confidence 999999986544556677899777766666665 57999999999999885555555776
No 93
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.043 Score=57.54 Aligned_cols=54 Identities=20% Similarity=0.380 Sum_probs=43.4
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-------cCCCCCCCCCcCCCceEEecCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-------SSSCLVCHEEFGEMDKILINGN 245 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-------~~~CpvCg~~f~~~DiI~Lnp~ 245 (371)
.+.||||..+.. |-.+-.||||||-.||=++- -..||+|...+...|+-++--.
T Consensus 186 ~~~CPICL~~~~----~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e 246 (513)
T KOG2164|consen 186 DMQCPICLEPPS----VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIE 246 (513)
T ss_pred CCcCCcccCCCC----cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeec
Confidence 678999987664 44555699999999998863 3589999999999998777653
No 94
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=93.40 E-value=0.73 Score=35.77 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=47.3
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
+|.|+|-+.. ....+++++..||.+|-++ +++++....+..||..+..+. -|++++.|.+. +..|||
T Consensus 4 mm~v~vng~~---~~~~~~~~~~~tv~~ll~~---l~~~~~~v~v~vNg~iv~~~~------~l~~gD~Veii-~~V~GG 70 (70)
T PRK08364 4 MIRVKVIGRG---IEKEIEWRKGMKVADILRA---VGFNTESAIAKVNGKVALEDD------PVKDGDYVEVI-PVVSGG 70 (70)
T ss_pred EEEEEEeccc---cceEEEcCCCCcHHHHHHH---cCCCCccEEEEECCEECCCCc------CcCCCCEEEEE-ccccCC
Confidence 4788885543 2456788888899998544 467777788889999986543 46888999764 444544
No 95
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=93.37 E-value=0.036 Score=43.06 Aligned_cols=52 Identities=25% Similarity=0.450 Sum_probs=26.1
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCceEEecC
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILING 244 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~DiI~Lnp 244 (371)
..|+++...|.. -|.++.|.|+|+..++..--...||+|..|--..|+ .+|+
T Consensus 8 LrCs~C~~~l~~---pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw~qD~-~~Nr 59 (65)
T PF14835_consen 8 LRCSICFDILKE---PVCLGGCEHIFCSSCIRDCIGSECPVCHTPAWIQDI-QINR 59 (65)
T ss_dssp TS-SSS-S--SS----B---SSS--B-TTTGGGGTTTB-SSS--B-S-SS-----H
T ss_pred cCCcHHHHHhcC---CceeccCccHHHHHHhHHhcCCCCCCcCChHHHHHH-Hhhh
Confidence 358888776653 467899999999999999877889999999887775 3443
No 96
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.20 E-value=0.095 Score=51.31 Aligned_cols=55 Identities=22% Similarity=0.459 Sum_probs=39.5
Q ss_pred CCCCCCCCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcC
Q 017480 178 PGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFG 235 (371)
Q Consensus 178 ~~~~~~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~ 235 (371)
|....+..+..-.||+|+..-+. .++ +-+|||++|+-|+..-. +..||.||++-.
T Consensus 229 p~~sss~~t~~~~C~~Cg~~Pti--P~~-~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 229 PKFSSSTGTSDTECPVCGEPPTI--PHV-IGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCcccccccCCceeeccCCCCCC--Cee-eccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 44433334566789999986543 333 34799999999999864 479999998754
No 97
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=93.16 E-value=0.15 Score=40.60 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=44.1
Q ss_pred cCCCCCHHHHHHHHhcc-C-CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 23 ANQFETLNHLKRSLLSL-D-QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 23 v~~~~TV~~lK~~i~~~-g-i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
|+++++|.+|++.|... . -....+.|.++|..|+|...|..--||.++++|.|+.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 56789999999999988 3 5678899999999999887772234588888888764
No 98
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=93.16 E-value=0.12 Score=40.94 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=44.0
Q ss_pred EEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC---CCC---ceEEE-eCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480 8 FIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ---SLS---SLYFT-LNGKILDESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 8 FVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi---~~~---~q~Li-~~Gk~L~D~~tL~~~~~I~~~sTL~L 75 (371)
-|....|+ .+.|.+....+|++|-..|.+. +. ... ...|. -.|.+|+++.+| .++||.+|++|.|
T Consensus 6 tv~~~~~~--~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL-~~~gV~dGd~L~L 78 (79)
T PF08817_consen 6 TVDAGNGR--QVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTL-ADAGVRDGDVLVL 78 (79)
T ss_dssp EEE-TT----EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBC-GGGT--TT-EEEE
T ss_pred EEEcCCCc--EEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcH-hHcCCCCCCEEEe
Confidence 34443343 6788888889999999998887 54 222 35665 689999999999 9999999998876
No 99
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=93.06 E-value=0.5 Score=37.38 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=52.1
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEE--EeCCeeCCC---CCCcccCCCCCCCCeEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYF--TLNGKILDE---STPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~L--i~~Gk~L~D---~~tL~~~~~I~~~sTL~L 75 (371)
-.|-||..+|. .+...-..++||.+|.+.|... +.....+.| .|--+.|.+ +.|| .+.|+.+.++|.|
T Consensus 5 ~~I~iRlPdG~--ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL-~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGS--RLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTL-LELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCH-HHCCCCCceEEEE
Confidence 46889999997 4555566688999999999655 665566777 466777753 4789 9999999998865
No 100
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=93.05 E-value=0.16 Score=49.32 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc--CCCCCce----EEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL--DQSLSSL----YFTLNGKILDESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~--gi~~~~q----~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L 75 (371)
|-|.+.+-++..+.-..++++.+||.+++..+... .+.+.-+ ++.-.|+||-|+++| ++|+..++.||.+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l-~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKL-QEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHH-HHhccCCCCEEEE
Confidence 55667666664444457888899999999888777 4555334 445689999999999 9999999877654
No 101
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=92.95 E-value=0.51 Score=36.14 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=46.9
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
|+|.| +|. ..++.+..||.+| |...+++.....+.++|..+.-+. |..+ |++++.|++ ++..|||
T Consensus 1 m~i~v---NG~----~~~~~~~~tl~~l---l~~l~~~~~~vav~~N~~iv~r~~--~~~~-L~~gD~ieI-v~~VgGG 65 (65)
T PRK05863 1 MIVVV---NEE----QVEVDEQTTVAAL---LDSLGFPEKGIAVAVDWSVLPRSD--WATK-LRDGARLEV-VTAVQGG 65 (65)
T ss_pred CEEEE---CCE----EEEcCCCCcHHHH---HHHcCCCCCcEEEEECCcCcChhH--hhhh-cCCCCEEEE-EeeccCC
Confidence 67777 554 4555667798887 556688899999999999776443 2555 899999985 5555555
No 102
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=92.76 E-value=0.79 Score=34.52 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
|+|+| +|. .+++.+..||++|-+.+ +++ ....+-.+|..+..+. |.+.-|.++++|++.-.+-||
T Consensus 1 m~i~v---Ng~----~~~~~~~~tl~~ll~~l---~~~-~~~~v~vN~~~v~~~~--~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 1 MDIQL---NQQ----TLSLPDGATVADALAAY---GAR-PPFAVAVNGDFVARTQ--HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CEEEE---CCE----EEECCCCCcHHHHHHhh---CCC-CCeEEEECCEEcCchh--cccccCCCCCEEEEEeeccCC
Confidence 67777 554 56677778999986654 443 4567789999876432 134558999999876655554
No 103
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.75 E-value=0.065 Score=51.40 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=38.8
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCceEEecC
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILING 244 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~DiI~Lnp 244 (371)
.+|-.|+.--+ .. =.||-.|+||||+.|++......|+.|.++.. +|.|++
T Consensus 4 VhCn~C~~~~~-~~-~f~LTaC~HvfC~~C~k~~~~~~C~lCkk~ir---~i~l~~ 54 (233)
T KOG4739|consen 4 VHCNKCFRFPS-QD-PFFLTACRHVFCEPCLKASSPDVCPLCKKSIR---IIQLNR 54 (233)
T ss_pred EEeccccccCC-CC-ceeeeechhhhhhhhcccCCccccccccceee---eeeccc
Confidence 46777776655 33 35678899999999999987779999999854 455553
No 104
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=92.60 E-value=0.84 Score=34.93 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
|+|.| +|+ .+++.+..||.+|-.+ .+++.....+-.||..+.-+. |..+-|.+++.|++.-.+-||
T Consensus 1 m~i~v---Ng~----~~~~~~~~tl~~ll~~---l~~~~~~vaVavN~~iv~r~~--w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 1 MQILF---NDQ----PMQCAAGQTVHELLEQ---LNQLQPGAALAINQQIIPREQ--WAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CEEEE---CCe----EEEcCCCCCHHHHHHH---cCCCCCcEEEEECCEEeChHH--cCccccCCCCEEEEEEEccCC
Confidence 77877 564 4566667799988554 355556788899999987332 144568999999865555443
No 105
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=92.22 E-value=0.19 Score=35.47 Aligned_cols=36 Identities=33% Similarity=0.609 Sum_probs=24.8
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhhc------CCCCCC
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS------SSCLVC 230 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~------~~CpvC 230 (371)
|||....|.. =|. -+|||+|...+|..+-. ..||+|
T Consensus 1 CpiC~~~~~~---Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVS-LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE--SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccc-cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8888888865 233 38999999999999842 368877
No 106
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=0.16 Score=48.56 Aligned_cols=58 Identities=26% Similarity=0.386 Sum_probs=46.9
Q ss_pred CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCceEEecCCh
Q 017480 185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDKILINGNE 246 (371)
Q Consensus 185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~DiI~Lnp~~ 246 (371)
..+.|-|-|+...--+ -++-.|||.|++-||-+.- +..||||-...+.+-+|+|.+..
T Consensus 44 ~~~~FdCNICLd~akd----PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG 106 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD----PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRG 106 (230)
T ss_pred CCCceeeeeeccccCC----CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccC
Confidence 3578999999764433 3456799999999999873 56899999999999999999743
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=91.97 E-value=0.12 Score=53.49 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=51.9
Q ss_pred cccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeee
Q 017480 121 NCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLS 175 (371)
Q Consensus 121 ~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt 175 (371)
.|+||++-=+.|||+---|++|.|-=|-+||.+....|..+...++.|||+++--
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~ 56 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVP 56 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeecccc
Confidence 5999999999999999999999999999999999889999999999999999864
No 108
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.086 Score=51.30 Aligned_cols=53 Identities=17% Similarity=0.291 Sum_probs=41.0
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHH-hh---cCCCCCCCCCcCCCceEEe
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-VK---SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-vk---~~~CpvCg~~f~~~DiI~L 242 (371)
.+.|.|+++..++.. -.-.+|||||+..||-. +. ...||.|-......+||.|
T Consensus 213 ~~d~kC~lC~e~~~~----ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~viil 269 (271)
T COG5574 213 LADYKCFLCLEEPEV----PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKVIIL 269 (271)
T ss_pred ccccceeeeecccCC----cccccccchhhHHHHHHHHHhhccccCchhhhhccchhhhee
Confidence 457889999887763 23368999999999998 32 3469999988777777765
No 109
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=91.57 E-value=1.1 Score=34.54 Aligned_cols=66 Identities=17% Similarity=0.261 Sum_probs=46.7
Q ss_pred eEEEEEcCCCCeeeEEEEcCCC-CCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQF-ETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~-~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
|+|.| +|+ ..++... .||.+| |...++++....+-++|..+.-+. |..+-|++++.|++ ++..|||
T Consensus 1 m~I~v---NG~----~~~~~~~~~tv~~l---L~~l~~~~~~vav~vN~~iv~r~~--w~~~~L~~gD~iEI-v~~VgGG 67 (67)
T PRK07696 1 MNLKI---NGN----QIEVPESVKTVAEL---LTHLELDNKIVVVERNKDILQKDD--HTDTSVFDGDQIEI-VTFVGGG 67 (67)
T ss_pred CEEEE---CCE----EEEcCCCcccHHHH---HHHcCCCCCeEEEEECCEEeCHHH--cCceecCCCCEEEE-EEEecCC
Confidence 67777 554 3445444 578877 555678888888999999997543 36677999999985 5555555
No 110
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=91.55 E-value=0.4 Score=44.17 Aligned_cols=55 Identities=29% Similarity=0.502 Sum_probs=40.6
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHHHHhh
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKV 263 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~ak~ 263 (371)
...|+||-++..++ ...|+. ....||+||.+..+.| +.+.++.|+++++.....-
T Consensus 115 ~~~Y~Cp~C~~ryt---------------f~eA~~--~~F~Cp~Cg~~L~~~d------n~~~~~~l~~~I~~l~~~~ 169 (178)
T PRK06266 115 NMFFFCPNCHIRFT---------------FDEAME--YGFRCPQCGEMLEEYD------NSELIKELKEQIKELEEEL 169 (178)
T ss_pred CCEEECCCCCcEEe---------------HHHHhh--cCCcCCCCCCCCeecc------cHHHHHHHHHHHHHHHHHh
Confidence 46799999886654 134554 3689999999988753 4677899999998776443
No 111
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.24 Score=48.88 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=37.9
Q ss_pred EcCCcccc--cCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCce
Q 017480 190 QCPITGLE--FNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDK 239 (371)
Q Consensus 190 ~CPVT~~e--~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~Di 239 (371)
.||++... +|... +.++.+|||-++++|+..+. +..||.|++..-...+
T Consensus 2 ~Cp~CKt~~Y~np~l-k~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDL-KLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccc-eeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 49998765 55544 45566999999999999985 5799999998765543
No 112
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=91.19 E-value=0.83 Score=34.69 Aligned_cols=58 Identities=21% Similarity=0.242 Sum_probs=42.5
Q ss_pred EEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 20 TVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 20 ~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.+++.+..||.+|.+++ +++.+...+..+|+.+..+. |.++-|.++++|.+.-.+-||
T Consensus 8 ~~~~~~~~tv~~ll~~l---~~~~~~i~V~vNg~~v~~~~--~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 8 PREVEEGATLAELLEEL---GLDPRGVAVALNGEIVPRSE--WASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred EEEcCCCCCHHHHHHHc---CCCCCcEEEEECCEEcCHHH--cCceecCCCCEEEEEEeccCC
Confidence 56677778999986544 56778888999999987542 245668999999876555544
No 113
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.51 E-value=1.4 Score=35.21 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C-CCCCceEEE--eCCeeCC-CCCCcccCCCCCCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D-QSLSSLYFT--LNGKILD-ESTPLFKNPQIAPLS 71 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g-i~~~~q~Li--~~Gk~L~-D~~tL~~~~~I~~~s 71 (371)
-.|-||..+|. .++.....++||.+|.+.|... + -....+.|. |=.+.|. ++.|| .+.||.+.+
T Consensus 5 t~iqiRlpdG~--r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl-~eagL~~s~ 73 (79)
T cd01770 5 TSIQIRLADGK--RLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTL-KEANLLNAV 73 (79)
T ss_pred eEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcH-HHCCCcCcE
Confidence 46889999997 4555666788999999999876 3 233567775 6688885 47899 999998644
No 114
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=90.35 E-value=1.5 Score=35.64 Aligned_cols=67 Identities=15% Similarity=0.304 Sum_probs=48.1
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
.|+|.| +|+ ..++++..||.+| |...++++....+-+||..+.-+. |..+-|.+++.|++. +..|||
T Consensus 18 ~m~I~V---NG~----~~~~~~~~tl~~L---L~~l~~~~~~vAVevNg~iVpr~~--w~~t~L~egD~IEIv-~~VgGG 84 (84)
T PRK06083 18 LITISI---NDQ----SIQVDISSSLAQI---IAQLSLPELGCVFAINNQVVPRSE--WQSTVLSSGDAISLF-QAIAGG 84 (84)
T ss_pred eEEEEE---CCe----EEEcCCCCcHHHH---HHHcCCCCceEEEEECCEEeCHHH--cCcccCCCCCEEEEE-EEecCC
Confidence 477877 564 4556667798888 444578877788899999986432 366779999999864 555554
No 115
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=90.28 E-value=0.39 Score=43.31 Aligned_cols=80 Identities=25% Similarity=0.343 Sum_probs=50.4
Q ss_pred cHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCCCCCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHh
Q 017480 143 NKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV 222 (371)
Q Consensus 143 nKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev 222 (371)
|.+.|+..|..+.. .-+..|++- +... .+...|+||-++..++ -..|+.
T Consensus 78 ~~~~i~d~Ik~~~~----~~~~~lk~~----l~~e------~~~~~Y~Cp~c~~r~t---------------f~eA~~-- 126 (158)
T TIGR00373 78 NYEKALDVLKRKLE----ETAKKLREK----LEFE------TNNMFFICPNMCVRFT---------------FNEAME-- 126 (158)
T ss_pred CHHHHHHHHHHHHH----HHHHHHHHH----Hhhc------cCCCeEECCCCCcEee---------------HHHHHH--
Confidence 77888888776421 112222222 2111 1356799999886654 255665
Q ss_pred hcCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHH
Q 017480 223 KSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEE 259 (371)
Q Consensus 223 k~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~ 259 (371)
....||+||.+....| +++.++.|+++++..
T Consensus 127 ~~F~Cp~Cg~~L~~~d------n~~~i~~l~~~i~~l 157 (158)
T TIGR00373 127 LNFTCPRCGAMLDYLD------NSEAIEKLEEQIKFL 157 (158)
T ss_pred cCCcCCCCCCEeeecc------CHHHHHHHHHHHHhh
Confidence 3789999999876554 367788898888653
No 116
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=90.22 E-value=1.8 Score=34.39 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEE--EeCCeeCCC---CCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYF--TLNGKILDE---STPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~L--i~~Gk~L~D---~~tL~~~~~I~~~sTL~L~ 76 (371)
-.|-||-.+|.. +.-.-..++||.+|.+.|... +.+ ..+.| .|=-|.+.+ +.|| .+.||.+.++|.|.
T Consensus 5 ~~i~iRlp~G~~--~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL-~elgL~Psa~L~v~ 78 (79)
T cd01772 5 TRIQIRLLDGTT--LKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPL-QELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEECCCCCE--EEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCH-HHCCCCCceEEEEe
Confidence 468899999974 444455578999999999977 332 45666 466777853 5799 99999999988763
No 117
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.77 E-value=2.4 Score=34.41 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCC--eeCC--------CCCCcccCCCCCCCCeE
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNG--KILD--------ESTPLFKNPQIAPLSTL 73 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~G--k~L~--------D~~tL~~~~~I~~~sTL 73 (371)
...|-||-.+|...... -..++||++|-+-|...+..++.+.|+.+= +.++ .+.|| .+.||.+..+|
T Consensus 4 ~~~I~iRlp~G~Rl~rr--F~~~~tl~~l~~fv~~~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL-~eaGL~~s~~L 80 (85)
T cd01774 4 TVKIVFKLPNGTRVERR--FLFTQSLRVIHDFLFSLKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTL-LEAGLSNSEVL 80 (85)
T ss_pred eEEEEEECCCCCEEEEE--eCCCCcHHHHHHHHHhCCCCCCcEEEecCCCCccccccccccCcCCCCH-HHcCCCCccEE
Confidence 35788999999733334 444679999999998766666889998765 6775 36799 99999988877
Q ss_pred EEE
Q 017480 74 YLR 76 (371)
Q Consensus 74 ~L~ 76 (371)
.+.
T Consensus 81 ~V~ 83 (85)
T cd01774 81 FVQ 83 (85)
T ss_pred EEe
Confidence 553
No 118
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=89.66 E-value=1.9 Score=32.64 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=42.9
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
|+|.| +|+ .++++ ..||.+|...+ ++++.-..+-.||..+.-+. |.+.-|.+++.|.+.-.+-||
T Consensus 1 m~i~~---Ng~----~~~~~-~~tl~~Ll~~l---~~~~~~vavavN~~iv~~~~--~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 1 MKLFV---NGE----TLQTE-ATTLALLLAEL---DYEGNWLATAVNGELVHKEA--RAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CEEEE---CCe----EEEcC-cCcHHHHHHHc---CCCCCeEEEEECCEEcCHHH--cCccccCCCCEEEEEEeccCC
Confidence 77777 454 33443 35888886544 55555567889999887432 256678999999865555443
No 119
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=0.15 Score=46.77 Aligned_cols=42 Identities=29% Similarity=0.532 Sum_probs=36.2
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhc--CCCCCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS--SSCLVCH 231 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~--~~CpvCg 231 (371)
...+.|||+...|..- .+-+|||.|+..|+..+-. ..||+|.
T Consensus 11 ~~~~~C~iC~~~~~~p----~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP----VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC----ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 4578999999999754 6779999999999999875 7899998
No 120
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=89.64 E-value=2.2 Score=33.40 Aligned_cols=67 Identities=15% Similarity=0.254 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeCCC---CCCcccCCCCCCCCeEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKILDE---STPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L~D---~~tL~~~~~I~~~sTL~L 75 (371)
-.|-||..+|. .+...-..++||.+|.+-|...+.....+.|+ |-.+.|.+ +.|| .+.||.+ +++-+
T Consensus 3 t~i~iRlpdG~--~~~~~F~~~~tl~~l~~fv~~~~~~~~~f~L~t~~Pr~~~~~~~~~~TL-~e~gL~~-s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGK--RLEQRFNSTHKLSDVRDFVESNGPPAEPFTLMTSFPRRVLTDLDYELTL-QEAGLVN-EVVFQ 74 (77)
T ss_pred EEEEEEcCCCC--EEEEEeCCCCCHHHHHHHHHHcCCCCCCEEEEeCCCCccCCCCCccCcH-HHcCCcc-ceEEE
Confidence 35789999997 34455566789999999998874335667775 44677754 7899 9999995 44433
No 121
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=89.48 E-value=0.35 Score=47.03 Aligned_cols=67 Identities=21% Similarity=0.495 Sum_probs=51.7
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCCCCCCceeEcCCccccc
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEF 198 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~~~~~~~~~CPVT~~e~ 198 (371)
=..|.+|..|...||++-.-|++|++++|.++|-.+ ....|||.|-+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~--------------------------------~~i~CPv~gC~- 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDE--------------------------------ITIRCPVLGCE- 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccC--------------------------------ceeecccccCC-
Confidence 357999999999999999999999999999997552 24579999987
Q ss_pred CCceeEEEEeccCccccH-HHHHHhh
Q 017480 199 NGKYRFVAMRTCGHVLST-KALKEVK 223 (371)
Q Consensus 199 ng~~rfV~L~~CG~V~Se-~alkevk 223 (371)
+ ++.-.|||+.-. .+-+.++
T Consensus 223 ~-----~~~~~~~~l~~d~el~~kIr 243 (262)
T KOG2979|consen 223 N-----PYYIQPGHLDEDKELQQKIR 243 (262)
T ss_pred c-----cccccccccCchHHHHHHHH
Confidence 2 333458998876 3444444
No 122
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=89.37 E-value=1.5 Score=34.05 Aligned_cols=67 Identities=15% Similarity=0.047 Sum_probs=48.2
Q ss_pred EEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC-CCCceEEEe------CCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 9 IKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ-SLSSLYFTL------NGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 9 Vk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi-~~~~q~Li~------~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
|+.++|. ..+++++++.|+.+|=.+|... || ..+-|-|.| ...+|+.+.+| .........+..|.+|
T Consensus 1 V~llD~~--~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l-~~q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 1 VRLLDGT--TKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKL-KKQLKKNNPPFTLYFR 75 (80)
T ss_dssp EEESSEE--EEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBG-GGSTBTSSSSEEEEEE
T ss_pred CCCcCCC--cEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccH-HHHcCCCCCCEEEEEE
Confidence 5667885 5677777788999999999999 85 667778888 24678888899 7776663344444444
No 123
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.13 E-value=2.6 Score=34.24 Aligned_cols=71 Identities=15% Similarity=0.291 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeC---CCCCCcccCCCCCCCCeEEEEee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKIL---DESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L---~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
-+|-||-++|.....++.+ ++||..|-..|...|.+++.+.|+ |==|.+ +.+.|| .+.|+.+-.||.|.-|
T Consensus 6 t~i~vRlP~G~r~~rrF~~--~~~L~~v~~fv~~~g~~~~~f~L~t~FPRr~~~~~d~~~TL-~e~GL~P~~~LfVq~r 81 (82)
T cd01773 6 ARLMLRYPDGKREQIALPE--QAKLLALVRHVQSKGYPNERFELLTNFPRRKLSHLDYDITL-QEAGLCPQETVFVQER 81 (82)
T ss_pred eEEEEECCCCCEEEEEeCC--CCcHHHHHHHHHhcCCCCCCEEEecCCCCcccCCcccCCCH-HHcCCCCCcEEEEecC
Confidence 4799999999854455555 679999999999888788888875 333444 335799 9999999999987544
No 124
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.92 E-value=1.5 Score=33.85 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=45.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CC----CCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQ----SLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi----~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
...+++++..||.+|.++|... +- ......+..||+....+. -|.+++.|.+..++-||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~------~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDT------PLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCc------ccCCCCEEEEeCCCCCC
Confidence 4677887788999999998875 21 234667788999987543 46888999988888776
No 125
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.74 E-value=0.77 Score=43.55 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=53.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
.+-+.+...+||.++|.++.+. |+.+..|+..|+|+.|-|.+.| ..+.|+.+.--.|.++++
T Consensus 158 d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~L-eEc~iekg~rYvlqviVl 220 (231)
T KOG0013|consen 158 DFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDL-EECKIEKGQRYVLQVIVL 220 (231)
T ss_pred heeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccc-eeeeecCCCEEEEEEEec
Confidence 3456777789999999999999 9988899999999999999999 999999998666665543
No 126
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.41 E-value=0.25 Score=50.82 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=37.0
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh----------hcCCCCCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV----------KSSSCLVCH 231 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev----------k~~~CpvCg 231 (371)
..-|.|-|+-.+..|.+.|+++ ||+|||+..|++.- +...||.++
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~l-pC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFL-PCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred hhcccceeeehhhcCcceeeec-ccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 4569999999999998888766 89999999999973 245787754
No 127
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=88.20 E-value=2 Score=32.50 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=41.1
Q ss_pred EEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 20 TVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 20 ~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.++..+..||.+|... .++++....+..||+.+..+. |.++-|.+++.|.+...+-||
T Consensus 7 ~~~~~~~~tv~~ll~~---l~~~~~~v~v~vN~~iv~~~~--~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 7 PVEVEDGLTLAALLES---LGLDPRRVAVAVNGEIVPRSE--WDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEEcCCCCcHHHHHHH---cCCCCCeEEEEECCEEcCHHH--cCceecCCCCEEEEEEeccCC
Confidence 5666677799988554 366778888899999986432 145678999999865554443
No 128
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=0.76 Score=38.20 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=60.1
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.+-|-|=.++|. ++-+.+--+.|...|-.-...+ |-..+++|+.|+|+.++-+.|- ++.+...+..|+.+.--.||
T Consensus 24 hinLkvv~qd~t--elfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP-~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 24 HINLKVVDQDGT--ELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTP-GDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred ccceEEecCCCC--EEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCCh-hhcCCccchHHHHHHHHhcC
Confidence 355677778886 5556666677999987766666 8899999999999999999998 99999998888766555554
No 129
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=87.26 E-value=3.7 Score=32.89 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=54.4
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeCC---CCCCcccCCCCCCCCeEEEEee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKILD---ESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L~---D~~tL~~~~~I~~~sTL~L~lr 78 (371)
-+|-||-.+|. .+.-.-..++|+++|-.-|...|.+...+.|+ |==+.+. .+.|| .+.||.+..+|.+.-|
T Consensus 5 ~~i~iRlP~G~--r~~rrF~~t~~L~~l~~fv~~~~~~~~~f~L~t~fPRk~~~~~d~~~TL-~e~gL~p~~~L~Veer 80 (80)
T cd01771 5 SKLRVRTPSGD--FLERRFLGDTPLQVLLNFVASKGYPIDEYKLLSSWPRRDLTQLDPNFTL-LELKLYPQETLILEER 80 (80)
T ss_pred EEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHhcCCCCCCEEEecCCCCCCCcCCCCCCcH-HHcCCCCCcEEEEEcC
Confidence 57889999997 33444555779999999998888777788884 4455563 35799 9999999998877543
No 130
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=86.82 E-value=2 Score=35.34 Aligned_cols=58 Identities=22% Similarity=0.181 Sum_probs=42.0
Q ss_pred EEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 20 TVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 20 ~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
.+++ .++++.||.-|+.+ ++..+.--+.+...+|+++.+| -+-+|+-..++.+.+.+.
T Consensus 8 ~mDI--~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L-~dQcVqgeGlVQlnvQi~ 66 (88)
T PF11620_consen 8 HMDI--REPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSL-VDQCVQGEGLVQLNVQIK 66 (88)
T ss_dssp EEES--SSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBT-TTSS----SEEEEEEEEE
T ss_pred EEec--CCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccH-HHhhccccCEEEEEEEEE
Confidence 4566 55999999999999 9888888888899999999999 888899999999999987
No 131
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=85.84 E-value=3.3 Score=41.81 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=48.9
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
|||.| +|+ .+++.+..||.+| |.+++++.....+.+||..+.-+. |.++-|++++.|++.-. .|||
T Consensus 1 M~I~V---NGk----~~el~e~~TL~dL---L~~L~i~~~~VAVeVNgeIVpr~~--w~~t~LkeGD~IEII~~-VgGG 66 (326)
T PRK11840 1 MRIRL---NGE----PRQVPAGLTIAAL---LAELGLAPKKVAVERNLEIVPRSE--YGQVALEEGDELEIVHF-VGGG 66 (326)
T ss_pred CEEEE---CCE----EEecCCCCcHHHH---HHHcCCCCCeEEEEECCEECCHHH--cCccccCCCCEEEEEEE-ecCC
Confidence 77777 554 4566677898888 555688889999999999997433 36678999999986554 4443
No 132
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=85.61 E-value=0.97 Score=35.49 Aligned_cols=40 Identities=18% Similarity=0.497 Sum_probs=30.2
Q ss_pred cCCcccccC---------CceeEEEEeccCccccHHHHHHhh--cCCCCCC
Q 017480 191 CPITGLEFN---------GKYRFVAMRTCGHVLSTKALKEVK--SSSCLVC 230 (371)
Q Consensus 191 CPVT~~e~n---------g~~rfV~L~~CG~V~Se~alkevk--~~~CpvC 230 (371)
|+|+...|. +....+++-+|||+|-..+|.+.- ...||+|
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~C 72 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLC 72 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCC
Confidence 999998882 223456677899999999999863 4699998
No 133
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=84.99 E-value=0.46 Score=38.72 Aligned_cols=29 Identities=24% Similarity=0.635 Sum_probs=23.9
Q ss_pred EcCCcccccCCceeEEEEeccCccccHHHHH
Q 017480 190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALK 220 (371)
Q Consensus 190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alk 220 (371)
.|++|++.+++ ..+++-||||||-..|++
T Consensus 80 ~C~vC~k~l~~--~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 80 KCSVCGKPLGN--SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CccCcCCcCCC--ceEEEeCCCeEEeccccc
Confidence 59999999987 456677999999887764
No 134
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=84.62 E-value=0.51 Score=47.55 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=46.9
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc--CC-CCCceEEEeCCeeCCCCCCc
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL--DQ-SLSSLYFTLNGKILDESTPL 61 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~--gi-~~~~q~Li~~Gk~L~D~~tL 61 (371)
..-+|||..+-+-+.++|..+-.-||++||..+... +- -..+|||+|.||.|.|...|
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl 69 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCL 69 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhH
Confidence 456899998887677777777788999999988876 32 23589999999999998766
No 135
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=83.86 E-value=0.87 Score=30.47 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=8.8
Q ss_pred hcCCCCCCCCC
Q 017480 223 KSSSCLVCHEE 233 (371)
Q Consensus 223 k~~~CpvCg~~ 233 (371)
....||+||.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 56789999875
No 136
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=83.18 E-value=5.3 Score=31.33 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=43.6
Q ss_pred eEEEEcCCC-CCHHHHHHHHhcc-C-CC--CCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 18 TLTVGANQF-ETLNHLKRSLLSL-D-QS--LSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 18 t~~l~v~~~-~TV~~lK~~i~~~-g-i~--~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
...+++.+. .||.+|.+.|.+. + +- ....++..||+...++.. |+++++|.+..++-||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~------l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDAL------LNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcC------cCCCCEEEEeCCCCCC
Confidence 346777765 8999999999887 3 21 133567889998886543 5888999988888775
No 137
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=82.71 E-value=0.39 Score=47.84 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEEcCCCCeeeEEEEcC-C--CCCHHHHHHHHhc----------c-CCCCCceE-----EEeCCeeCCCCCCcccCCCC
Q 017480 7 IFIKSPSNSLTTLTVGAN-Q--FETLNHLKRSLLS----------L-DQSLSSLY-----FTLNGKILDESTPLFKNPQI 67 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~-~--~~TV~~lK~~i~~----------~-gi~~~~q~-----Li~~Gk~L~D~~tL~~~~~I 67 (371)
|.+|++....-.+.|... + +.||.+||..+++ . ++|.+-.. |.|+-+|+.|+.|| .+..=
T Consensus 81 V~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl-~e~l~ 159 (309)
T PF12754_consen 81 VHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTL-AEVLA 159 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcH-HHHHh
Confidence 345555443223344333 2 6899999999999 7 78888888 99999999888888 55432
Q ss_pred C-------CCCeEEEEeeecCCCCCC
Q 017480 68 A-------PLSTLYLRQRVFGGGGDG 86 (371)
Q Consensus 68 ~-------~~sTL~L~lrL~G~~~~~ 86 (371)
. .+.++++.+=++||...-
T Consensus 160 ~~~~~l~~~~~~vE~gvMVlGGa~~~ 185 (309)
T PF12754_consen 160 DSESRLLSGGKEVEFGVMVLGGAAVI 185 (309)
T ss_dssp --------------------------
T ss_pred cccchhccCCceEEEEEEEECCcccC
Confidence 2 356777766666665543
No 138
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.20 E-value=1.9 Score=40.74 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=22.0
Q ss_pred CCCCCCCCCcCCCceEEecCChHHHHHHHHHHH
Q 017480 225 SSCLVCHEEFGEMDKILINGNEEEISVLRERME 257 (371)
Q Consensus 225 ~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~ 257 (371)
.+||.||=.|.+.|.=.|.+ .+.+.+++.+.
T Consensus 49 ~vCP~CgyA~~~~~F~~l~~--~~~~~i~~~i~ 79 (214)
T PF09986_consen 49 WVCPHCGYAAFEEDFEKLSP--EQKEKIKENIS 79 (214)
T ss_pred EECCCCCCcccccccccCCH--HHHHHHHHHHH
Confidence 58999999999988765554 45555555543
No 139
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=82.14 E-value=0.96 Score=49.36 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=64.7
Q ss_pred CeeeCCCCceecHHHHHHHHHcCCC-CCccCccCCCCCceeeeeeecCCCCC--CCCCceeEcCCcccccCCceeEEEEe
Q 017480 132 PCVIDKLGTIFNKEALVHALLSKNL-PKQYSYIKGLKDLINVKLSRVPGAEE--NGDGIRFQCPITGLEFNGKYRFVAMR 208 (371)
Q Consensus 132 PIV~~~lG~LYnKeaILe~LL~k~~-~~~~~HIksLKDlv~Lklt~n~~~~~--~~~~~~~~CPVT~~e~ng~~rfV~L~ 208 (371)
++ ..+.++-|+.+.||+.+..+.. +..+.| -+.++..+++..++.+. ......+.||+++..|.=-.|-.
T Consensus 251 sl-~~~~v~~~t~~~llq~~~~~~~~~~~~~~---s~~~~~~~l~~~~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~--- 323 (636)
T KOG2169|consen 251 SL-SVYFVEGLTSKDLLQRLKQNGKINRNLSQ---SDALIKKKLTAGPDSEIATTSLRVSLNCPLSKMRMSLPARGH--- 323 (636)
T ss_pred ce-EEEEecccCHHHHHHHHhccCCccCchhH---hHHHhhcccccCCcccceeccceeEecCCcccceeecCCccc---
Confidence 53 4478999999999999997642 222222 14455667776665332 12356799999998875322222
Q ss_pred ccCccccHHHHHHh------hcCCCCCCCCCcCCCceE
Q 017480 209 TCGHVLSTKALKEV------KSSSCLVCHEEFGEMDKI 240 (371)
Q Consensus 209 ~CG~V~Se~alkev------k~~~CpvCg~~f~~~DiI 240 (371)
.|.|.=|-.|+--+ ..+.||||.+.+.-+|+|
T Consensus 324 ~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~ 361 (636)
T KOG2169|consen 324 TCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLI 361 (636)
T ss_pred ccccceecchhhhHHhccCCCeeeCccCCccccccchh
Confidence 46655555444433 368999999988766654
No 140
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.10 E-value=1.7 Score=43.36 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc---CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL---DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
|.+.+---.|++..- .-|.++-+ ..+|-+||.-|... |--.+-+.|+|+|-.=++-. -+|-|-+-||-.++-
T Consensus 1 MssvI~YrFkSqkn~-SRI~FdGT-Gl~vfdlKrEII~q~Klg~g~DFdLl~yn~~tnEEyd---Dd~fviprstsVIV~ 75 (427)
T COG5222 1 MSSVINYRFKSQKNF-SRISFDGT-GLPVFDLKREIINQRKLGSGKDFDLLFYNGETNEEYD---DDYFVIPRSTSVIVS 75 (427)
T ss_pred CCceeEEEeeccCCc-ceeEeccC-CccHHHHHHHHHHhhhccCCccceEEEecCCcccccc---CceEEEeccceEEEE
Confidence 555555566777764 33455555 59999999886554 55567788899997654211 234455556544444
Q ss_pred ee
Q 017480 78 RV 79 (371)
Q Consensus 78 rL 79 (371)
|.
T Consensus 76 R~ 77 (427)
T COG5222 76 RI 77 (427)
T ss_pred ec
Confidence 43
No 141
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=82.07 E-value=3.5 Score=32.50 Aligned_cols=60 Identities=18% Similarity=0.149 Sum_probs=42.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcc--CCCC--CceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 17 TTLTVGANQFETLNHLKRSLLSL--DQSL--SSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~--gi~~--~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
...++++.+..||++|...|... ++.. ....+..||+...++.. |.++++|.+..+.-||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~------l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAA------LKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcC------cCCCCEEEEeCCCCCC
Confidence 34677887888999999998765 2211 22346789988765543 5788999888777775
No 142
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=81.40 E-value=0.7 Score=43.56 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=47.2
Q ss_pred cCccCC-CCCceeeeeeecCCCCC------CCCCceeEcCCcccccCCceeEEEEeccCccccHHHHH-Hh-hcCCCCCC
Q 017480 160 YSYIKG-LKDLINVKLSRVPGAEE------NGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALK-EV-KSSSCLVC 230 (371)
Q Consensus 160 ~~HIks-LKDlv~Lklt~n~~~~~------~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alk-ev-k~~~CpvC 230 (371)
|.|-++ .|-=-.|+-.||..+++ .....+|.|-|+.+.+.. ++| -.|||-|+..|.- .+ +...|-+|
T Consensus 161 flH~R~D~KtGWkLn~EWnA~~Ee~~v~~~~~e~IPF~C~iCKkdy~s--pvv--t~CGH~FC~~Cai~~y~kg~~C~~C 236 (259)
T COG5152 161 FLHDRSDFKTGWKLNQEWNAEYEEAPVISGPGEKIPFLCGICKKDYES--PVV--TECGHSFCSLCAIRKYQKGDECGVC 236 (259)
T ss_pred hhhhhhhhhcccccchhhcchhhhcccccCCCCCCceeehhchhhccc--hhh--hhcchhHHHHHHHHHhccCCcceec
Confidence 445553 23333455566654432 235678999999998753 333 6799999988754 44 46799999
Q ss_pred CCCcC
Q 017480 231 HEEFG 235 (371)
Q Consensus 231 g~~f~ 235 (371)
|+.-.
T Consensus 237 gk~t~ 241 (259)
T COG5152 237 GKATY 241 (259)
T ss_pred chhhc
Confidence 98643
No 143
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.22 E-value=0.69 Score=45.98 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=39.3
Q ss_pred EcCCcccccCCceeEEEEeccCccccHHHHHHhh--cC-CCCCCCCCcCCCceEEecCCh
Q 017480 190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SS-SCLVCHEEFGEMDKILINGNE 246 (371)
Q Consensus 190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~-~CpvCg~~f~~~DiI~Lnp~~ 246 (371)
.|||+.-.++ ++ ..-+|+|+|+.-|+|-.- .+ .|++|-.+|.+. |.++|+-
T Consensus 9 eC~IC~nt~n--~P--v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~--i~~~psl 62 (324)
T KOG0824|consen 9 ECLICYNTGN--CP--VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST--IDFEPSL 62 (324)
T ss_pred cceeeeccCC--cC--ccccccchhhhhhhcchhhcCCCCCceecCCCCcc--hhcchhh
Confidence 5888887665 33 456899999999999873 34 599999999865 7777754
No 144
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=79.39 E-value=1.5 Score=34.17 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=26.2
Q ss_pred EEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCc----eEEecCChHHHH
Q 017480 204 FVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMD----KILINGNEEEIS 250 (371)
Q Consensus 204 fV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~D----iI~Lnp~~ee~~ 250 (371)
|.+=+.|..|.. ...||+||......| ||+++|.+.+++
T Consensus 5 ~~AC~~C~~i~~--------~~~Cp~Cgs~~~S~~w~G~v~i~dPe~S~vA 47 (64)
T PRK06393 5 YRACKKCKRLTP--------EKTCPVHGDEKTTTEWFGFLIITEPEGSAIA 47 (64)
T ss_pred hhhHhhCCcccC--------CCcCCCCCCCcCCcCcceEEEEECCchhHHH
Confidence 334455666663 448999998764443 677889887775
No 145
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=78.41 E-value=6.6 Score=31.72 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=39.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE-eCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 17 TTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT-LNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li-~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
..++++.++..||.++ |+++|||..+.-++ -||++.+-+ |-+++|..|.+.
T Consensus 23 ~~~~~~~~~~~tvkd~---IEsLGVP~tEV~~i~vNG~~v~~~------~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 23 GPFTHPFDGGATVKDV---IESLGVPHTEVGLILVNGRPVDFD------YRLKDGDRVAVY 74 (81)
T ss_pred CceEEecCCCCcHHHH---HHHcCCChHHeEEEEECCEECCCc------ccCCCCCEEEEE
Confidence 3577888888898888 88889999998764 499988765 445788877664
No 146
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=78.06 E-value=2.5 Score=45.35 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc---CCCCCc------eEEE--eC--Ce-eCCCC-----------
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL---DQSLSS------LYFT--LN--GK-ILDES----------- 58 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~~------q~Li--~~--Gk-~L~D~----------- 58 (371)
.|.|+|=...+....+.|.|-..|||.|+|++|.+. +.|.++ .-|- .+ |+ .|.|.
T Consensus 189 ~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wk 268 (539)
T PF08337_consen 189 TLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWK 268 (539)
T ss_dssp EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEE
T ss_pred EEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCce
Confidence 466775555444456788888899999999999877 555444 3331 12 33 45442
Q ss_pred --CCcccCCCCCCCCeEEEEeeec
Q 017480 59 --TPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 59 --~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
-|| +.|+|+++++|.|+.+.-
T Consensus 269 rLNTL-~HY~V~dga~vaLv~k~~ 291 (539)
T PF08337_consen 269 RLNTL-AHYKVPDGATVALVPKQH 291 (539)
T ss_dssp E--BH-HHHT--TTEEEEEEES--
T ss_pred EeccH-hhcCCCCCceEEEeeccc
Confidence 378 999999999999998864
No 147
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=6.3 Score=37.51 Aligned_cols=68 Identities=19% Similarity=0.163 Sum_probs=49.5
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEE-EeCC-----eeCC-CCCCcccCCCCCCCCeEEEE
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYF-TLNG-----KILD-ESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~L-i~~G-----k~L~-D~~tL~~~~~I~~~sTL~L~ 76 (371)
++|-+..... ......+.+.||+++|.+|.-+ |.+++...| +|.| -.|+ ++..| ..|...++.-||++
T Consensus 4 v~Iss~~~~~-~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~l-g~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 4 VVISSSLNDF-RTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADL-GFYKVEDGLRIHVI 79 (234)
T ss_pred EEEecccccc-hhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccc-cccCCCCceEEEEE
Confidence 4554433321 1234567789999999999999 999999988 6666 3464 56778 99999999888764
No 148
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=76.47 E-value=9.3 Score=30.34 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=44.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcc-C-CC----------CCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 17 TTLTVGANQFETLNHLKRSLLSL-D-QS----------LSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~-g-i~----------~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
+...++++ ..||.+|.+.|.+. . +- -....+..||+....+. . .-|++++.|.+..++-||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~---~-~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGL---G-TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccC---C-CCCCCCCEEEEeCCCcCC
Confidence 34567776 78999999999766 2 11 12466788999886553 1 357899999998888876
No 149
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=74.67 E-value=2.6 Score=30.86 Aligned_cols=42 Identities=19% Similarity=0.491 Sum_probs=19.0
Q ss_pred eEcCCcccccCCceeEEEEeccCccc--cHHHHHHh----hcCCCCCCCCC
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVL--STKALKEV----KSSSCLVCHEE 233 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~--Se~alkev----k~~~CpvCg~~ 233 (371)
..||++...|.-- |=-..|-|+- ....+=+. ..+.||+|+++
T Consensus 3 L~CPls~~~i~~P---~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP---VRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE---EEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC---ccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 5799999988642 3334688884 33333333 25789999975
No 150
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=73.10 E-value=2.6 Score=42.35 Aligned_cols=29 Identities=31% Similarity=0.688 Sum_probs=23.7
Q ss_pred EeccCccccHHHHHHhh-----------cCCCCCCCCCcC
Q 017480 207 MRTCGHVLSTKALKEVK-----------SSSCLVCHEEFG 235 (371)
Q Consensus 207 L~~CG~V~Se~alkevk-----------~~~CpvCg~~f~ 235 (371)
+-|||||-|++..+-.. ...||.|...+.
T Consensus 375 F~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 375 FNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 34899999999998763 358999998875
No 151
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=72.75 E-value=3.1 Score=28.17 Aligned_cols=26 Identities=23% Similarity=0.690 Sum_probs=16.9
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEE 233 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~ 233 (371)
.|+|+++|..+.|.. ....||+||.+
T Consensus 2 ~~~C~~CG~i~~g~~--------------------~p~~CP~Cg~~ 27 (34)
T cd00729 2 VWVCPVCGYIHEGEE--------------------APEKCPICGAP 27 (34)
T ss_pred eEECCCCCCEeECCc--------------------CCCcCcCCCCc
Confidence 467777766555432 23589999975
No 152
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=72.72 E-value=2.8 Score=30.85 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=10.5
Q ss_pred HHHHHhhc--CCCCCCCCCcCCC
Q 017480 217 KALKEVKS--SSCLVCHEEFGEM 237 (371)
Q Consensus 217 ~alkevk~--~~CpvCg~~f~~~ 237 (371)
+.+.++.. ..||+|+.+|+++
T Consensus 11 k~i~~l~~~~~~CPlC~r~l~~e 33 (54)
T PF04423_consen 11 KYIEELKEAKGCCPLCGRPLDEE 33 (54)
T ss_dssp HHHHHHTT-SEE-TTT--EE-HH
T ss_pred HHHHHHhcCCCcCCCCCCCCCHH
Confidence 34444542 3899999999864
No 153
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=72.70 E-value=3.8 Score=31.59 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=18.9
Q ss_pred cCCCCCCCCCc-CCC---ceEEecCChHHHH
Q 017480 224 SSSCLVCHEEF-GEM---DKILINGNEEEIS 250 (371)
Q Consensus 224 ~~~CpvCg~~f-~~~---DiI~Lnp~~ee~~ 250 (371)
...||+||..- +++ =||+|+|...+++
T Consensus 15 ~~~CP~Cgs~~~T~~W~G~viI~dPe~S~IA 45 (61)
T PRK08351 15 EDRCPVCGSRDLSDEWFDLVIIIDVENSRIA 45 (61)
T ss_pred CCcCCCCcCCccccccccEEEEeCCcHhHHH
Confidence 34799999744 432 2788889877775
No 154
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=72.70 E-value=8.7 Score=36.08 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=51.8
Q ss_pred hhcccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCCCCCCceeEcC
Q 017480 113 EQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCP 192 (371)
Q Consensus 113 e~~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~~~~~~~~~CP 192 (371)
..+......|.+..+++.+|||. .-|++|..+-|.+||........ +. .+. . .......||
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT-~CGH~FC~~CI~~wl~~s~~s~~----~~-~~~-------~------~~k~~~~CP 72 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVT-LCGHLFCWPCIHKWTYASNNSRQ----RV-DQY-------D------HKREPPKCP 72 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEc-CCCchhHHHHHHHHHHhcccccc----cc-ccc-------c------ccCCCCcCC
Confidence 34445568899999999999664 78999999999999875321100 00 000 0 012345799
Q ss_pred CcccccCCceeEEEEeccCc
Q 017480 193 ITGLEFNGKYRFVAMRTCGH 212 (371)
Q Consensus 193 VT~~e~ng~~rfV~L~~CG~ 212 (371)
+++..++. ..++-+..-|.
T Consensus 73 vCR~~Is~-~~LvPiygrg~ 91 (193)
T PLN03208 73 VCKSDVSE-ATLVPIYGRGQ 91 (193)
T ss_pred CCCCcCCh-hcEEEeeccCC
Confidence 99888864 44555655564
No 155
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.42 E-value=3 Score=41.75 Aligned_cols=45 Identities=22% Similarity=0.470 Sum_probs=36.8
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCc
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEF 234 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f 234 (371)
.-|.||...|...-+ +..-||-|+|-..|+...- +..||+|..+.
T Consensus 324 veCaICms~fiK~d~-~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 324 VECAICMSNFIKNDR-LRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred ceEEEEhhhhcccce-EEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 579999988875556 4455999999999999974 57999998875
No 156
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=71.15 E-value=8.2 Score=29.42 Aligned_cols=61 Identities=15% Similarity=0.144 Sum_probs=46.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcc-C-C-CCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 19 LTVGANQFETLNHLKRSLLSL-D-Q-SLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 19 ~~l~v~~~~TV~~lK~~i~~~-g-i-~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
..+++.+..||.+|.++|... . + ......+..||+...+ . - .+.-|.++++|.+...+-||
T Consensus 14 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~-~-~-~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD-D-G-LDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG-G-T-TTSBEETTEEEEEEESTSTS
T ss_pred eEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC-c-c-CCcCcCCCCEEEEECCCCCC
Confidence 356777789999999998876 2 1 2377888999999988 2 2 45667999999886666665
No 157
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=70.72 E-value=1.4 Score=44.27 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=38.1
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEE
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~ 241 (371)
.=.||||.+.--+- .++-..|-|||++|+-.- +...|||.|.|-.-+++|-
T Consensus 300 ~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~r 352 (357)
T KOG0826|consen 300 REVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIR 352 (357)
T ss_pred cccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHH
Confidence 34799999875332 455669999999999875 3579999999876555543
No 158
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=70.70 E-value=3.6 Score=31.94 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=19.6
Q ss_pred CCCCCCCCC-cCCC---ceEEecCChHHHH
Q 017480 225 SSCLVCHEE-FGEM---DKILINGNEEEIS 250 (371)
Q Consensus 225 ~~CpvCg~~-f~~~---DiI~Lnp~~ee~~ 250 (371)
..||+||.+ |+++ =+|+|+|...|++
T Consensus 19 e~CP~Cgs~~~te~W~G~~iIidpe~SeIA 48 (64)
T COG2093 19 EICPVCGSTDLTEEWFGLLIIIDPEKSEIA 48 (64)
T ss_pred ccCCCCCCcccchhhccEEEEEcCcHHHHH
Confidence 459999987 7653 3788899876664
No 159
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=70.66 E-value=3 Score=41.03 Aligned_cols=38 Identities=29% Similarity=0.591 Sum_probs=24.9
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHH----hhcCCCCCCCCCcC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE----VKSSSCLVCHEEFG 235 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke----vk~~~CpvCg~~f~ 235 (371)
+-+|.||.+++.|.++.. -+|=-+ ++...|+.|++.|.
T Consensus 213 EKPF~C~hC~kAFADRSN------------LRAHmQTHS~~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 213 EKPFSCPHCGKAFADRSN------------LRAHMQTHSDVKKHQCPRCGKSFA 254 (279)
T ss_pred CCCccCCcccchhcchHH------------HHHHHHhhcCCccccCcchhhHHH
Confidence 567888888888865431 122221 34578999999885
No 160
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=69.38 E-value=3.3 Score=43.24 Aligned_cols=53 Identities=17% Similarity=0.254 Sum_probs=42.8
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEecC
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILING 244 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~Lnp 244 (371)
+.|.|+|..-- +-|+-.-.||||-.+.+++.- ...||+.++|.+.+|+|+|.+
T Consensus 1 m~CaISgEvP~---~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~ 55 (506)
T KOG0289|consen 1 MVCAISGEVPE---EPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKV 55 (506)
T ss_pred CeecccCCCCC---CccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccc
Confidence 36888887532 235556699999999999974 578999999999999999975
No 161
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=68.71 E-value=20 Score=29.53 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=44.2
Q ss_pred CCeeeEEEEcCCCCCHHHHHHHHhcc--C--CCC---CceEEEeCC--eeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 14 NSLTTLTVGANQFETLNHLKRSLLSL--D--QSL---SSLYFTLNG--KILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 14 g~~~t~~l~v~~~~TV~~lK~~i~~~--g--i~~---~~q~Li~~G--k~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
|....+-+-|+..+|+.++=++++.- | +++ ...++.++| ..+..+.++ ++.||.+...|++..
T Consensus 12 gDFv~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tV-aeagl~P~e~vev~~ 83 (85)
T PF06234_consen 12 GDFVLQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTV-AEAGLQPMEWVEVRF 83 (85)
T ss_dssp T-SBEEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BG-GGHT--TTEEEEEEE
T ss_pred cceEEEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEe-hhcCCCcceEEEEEE
Confidence 33345567788899999999999876 6 332 256788999 999999999 999999999888754
No 162
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=67.98 E-value=12 Score=34.62 Aligned_cols=55 Identities=24% Similarity=0.478 Sum_probs=36.1
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHHHHhh
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLKV 263 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~ak~ 263 (371)
...|+||.+...++= ..|+. ....||.||......| +.+.++.|+.++++.....
T Consensus 111 ~~~y~C~~~~~r~sf---------------deA~~--~~F~Cp~Cg~~L~~~d------~s~~i~~l~~~i~~l~~~l 165 (176)
T COG1675 111 NNYYVCPNCHVKYSF---------------DEAME--LGFTCPKCGEDLEEYD------SSEEIEELESELDELEEEL 165 (176)
T ss_pred CCceeCCCCCCcccH---------------HHHHH--hCCCCCCCCchhhhcc------chHHHHHHHHHHHHHHHHH
Confidence 457899887654430 22222 1378999999877655 3567888888887766554
No 163
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=67.71 E-value=3.7 Score=40.07 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=44.1
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCCCceEEecCCh-HHHHHHHHHH
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGEMDKILINGNE-EEISVLRERM 256 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~~DiI~Lnp~~-ee~~~l~~rm 256 (371)
.-...||+|.+..-+ -+.-+.||||+-..++.++- .-.||+=|-+ |...++|.- .+.+.|+.++
T Consensus 174 ~fs~rdPis~~~I~n---PviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~----~~~~~~~~~l~~d~el~~kI 242 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVN---PVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE----NPYYIQPGHLDEDKELQQKI 242 (262)
T ss_pred hhcccCchhhhhhhc---hhhhcCcCcchhhhhHHHHhccCceeecccccCC----ccccccccccCchHHHHHHH
Confidence 446799999776532 25557899999999999985 3589997765 667777743 2333444444
No 164
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=66.88 E-value=38 Score=30.18 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCC-CceEEEeC---C---eeCCCCCCcccCCCCC-CCCeEE
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSL-SSLYFTLN---G---KILDESTPLFKNPQIA-PLSTLY 74 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~-~~q~Li~~---G---k~L~D~~tL~~~~~I~-~~sTL~ 74 (371)
.+.|-|..++|. +..+.+++..|+.+|-..|+.. ||+. ..|.|.+- + .+|+...+| .+.... ....++
T Consensus 3 ~~~~~V~l~dg~--~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~~l~ 79 (207)
T smart00295 3 PRVLKVYLLDGT--TLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTL-LDQDVKSEPLTLY 79 (207)
T ss_pred cEEEEEEecCCC--EEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCH-HHhcCCCCCcEEE
Confidence 467888889997 6678888899999999999999 9743 34444331 2 467766777 544433 223455
Q ss_pred EEeeec
Q 017480 75 LRQRVF 80 (371)
Q Consensus 75 L~lrL~ 80 (371)
+..|+.
T Consensus 80 fr~r~~ 85 (207)
T smart00295 80 FRVKFY 85 (207)
T ss_pred EEEEEc
Confidence 555544
No 165
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=65.26 E-value=2.5 Score=42.85 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=39.6
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCce
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDK 239 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~Di 239 (371)
-..|-||..-|+ +-+|-||||-||-=|++..- ...||.|-.+|.+.|+
T Consensus 23 lLRC~IC~eyf~----ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 23 LLRCGICFEYFN----IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHhHHHHHhc----CceeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 457888877564 67788999999999999984 4689999999998653
No 166
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=65.03 E-value=3.6 Score=37.73 Aligned_cols=25 Identities=24% Similarity=0.773 Sum_probs=17.8
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEE 233 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~ 233 (371)
.|+|||||..+-|- ...+||+||.|
T Consensus 134 ~~vC~vCGy~~~ge---------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEGE---------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccCC---------------------CCCcCCCCCCh
Confidence 79999986554331 24689999965
No 167
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.86 E-value=4.5 Score=41.75 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=38.5
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----c-CCCCCCCCCcCCCceEEecCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----S-SSCLVCHEEFGEMDKILINGN 245 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~-~~CpvCg~~f~~~DiI~Lnp~ 245 (371)
.-+|-|+-.-+-..+-.-.+..|||||-.-||.++- + ..||+|.-...+. .++||.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r--~~~N~~ 64 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER--HVANPS 64 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce--eeechh
Confidence 346777744344456677788899999999999983 3 5899998443333 344664
No 168
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.82 E-value=3.7 Score=42.96 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=37.2
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCC
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCH 231 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg 231 (371)
--||||...|...+.-+.-..|-|-|--.|+.....+.||+|-
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR 218 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCR 218 (493)
T ss_pred CCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhh
Confidence 3799999999888777788889999999999998877777763
No 169
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.63 E-value=3.5 Score=44.08 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=40.9
Q ss_pred eeEcCCcccccCCc-eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEec
Q 017480 188 RFQCPITGLEFNGK-YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 188 ~~~CPVT~~e~ng~-~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Ln 243 (371)
.-.|+|+..+|..- ..-.-.-+|||+|...||+.. ....||.|-..+-....+-..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~~~~~ 349 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYVLWQIA 349 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcccccccc
Confidence 34799999998653 223345689999999999997 367899998866555444444
No 170
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=62.70 E-value=2.5 Score=43.63 Aligned_cols=49 Identities=24% Similarity=0.398 Sum_probs=0.0
Q ss_pred ceeEcCCcccc-------cCC--------ceeEEEEeccCccccHHHHHHhh-----------cCCCCCCCCCcC
Q 017480 187 IRFQCPITGLE-------FNG--------KYRFVAMRTCGHVLSTKALKEVK-----------SSSCLVCHEEFG 235 (371)
Q Consensus 187 ~~~~CPVT~~e-------~ng--------~~rfV~L~~CG~V~Se~alkevk-----------~~~CpvCg~~f~ 235 (371)
....||+|... |+. ...-.++.|||||.|++..+-.. ...||.|..+..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 35679998753 111 11233456999999999998653 258999999876
No 171
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=61.59 E-value=21 Score=29.25 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=33.8
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCC---CceEEEe
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSL---SSLYFTL 50 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~---~~q~Li~ 50 (371)
..+|+..|+ ++.+.+.+++.+.+|++.|..+ |+.. ..+.|.|
T Consensus 3 FK~~~~~Gr--vhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGR--VHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCC--EEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 357888886 7788888888999999999999 8765 4666655
No 172
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=61.03 E-value=6 Score=29.84 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=12.1
Q ss_pred CCCCCCCCCcCCCceEEec
Q 017480 225 SSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 225 ~~CpvCg~~f~~~DiI~Ln 243 (371)
..|++||++|++.|-|++=
T Consensus 6 ~~C~~Cg~~~~~~dDiVvC 24 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVC 24 (54)
T ss_pred ccChhhCCcccCCCCEEEC
Confidence 4688888888744434433
No 173
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=60.90 E-value=32 Score=27.17 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=36.4
Q ss_pred EEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeC--C--eeCCCC
Q 017480 8 FIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLN--G--KILDES 58 (371)
Q Consensus 8 FVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~--G--k~L~D~ 58 (371)
-|=.++|+ ...+.+.+.+||.++=+++..+ |+.++.-.|.+. + ++++.+
T Consensus 3 ~V~LPng~--~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~~ 56 (72)
T cd01760 3 RVYLPNGQ--RTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDLD 56 (72)
T ss_pred EEECcCCC--eEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCch
Confidence 44567886 4468888899999999999999 988777766554 3 555544
No 174
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=60.48 E-value=8.9 Score=32.20 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=23.8
Q ss_pred cCCccc-ccC-CceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480 191 CPITGL-EFN-GKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 191 CPVT~~-e~n-g~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~ 236 (371)
||+|+. ++- ......+ .=+|+.+.. .+....|+.||..|-.
T Consensus 1 C~~C~~~~~~~~~~~~~~-~~~G~~~~v----~~~~~~C~~CGe~~~~ 43 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPY-TYKGESITI----GVPGWYCPACGEELLD 43 (127)
T ss_pred CCCCCCccceeeeecceE-EEcCEEEEE----eeeeeECCCCCCEEEc
Confidence 888884 343 2222222 226765544 4455789999997754
No 175
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=60.31 E-value=15 Score=29.78 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=33.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCee
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKI 54 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~ 54 (371)
+++|.+.+..+..+|..+|.++ ++|+++..|.|.-.+
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 6889999999999999999999 999999999997544
No 176
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=59.84 E-value=5.3 Score=39.88 Aligned_cols=47 Identities=23% Similarity=0.502 Sum_probs=37.7
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~ 236 (371)
.....|-|+.--| ++=++-+|||-|+.=|++.- ....||+|-.+|.+
T Consensus 23 Ds~lrC~IC~~~i----~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRI----SIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhhee----ecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 4567888887644 46778899999999999986 35789999998875
No 177
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=58.97 E-value=47 Score=26.14 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=38.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-C-----CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-D-----QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-g-----i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.+.++.+ ..||.+|++.|.++ . ......++..|+..-.++. -|.+++.|-+..++-||
T Consensus 18 ~~~v~~~-~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~------~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 18 ALELAAD-FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDH------PLTDGDEVAFFPPVTGG 81 (81)
T ss_pred eEEecCC-CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCC------CCCCCCEEEEeCCCCCC
Confidence 3455433 37999999999776 2 1223445666776444333 36889999888888876
No 178
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=58.35 E-value=13 Score=25.24 Aligned_cols=32 Identities=31% Similarity=0.572 Sum_probs=27.9
Q ss_pred ccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 122 CALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 122 CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
|.+-.+.+.+|+|...=|++|-++-|.+||..
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~ 32 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK 32 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC
Confidence 66778889999989999999999999999876
No 179
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=58.26 E-value=7.7 Score=34.33 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=22.2
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh---hcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV---KSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev---k~~~CpvCg~~f~~~ 237 (371)
...|+||-++..++- ..|+... ....||.||.+....
T Consensus 97 ~~~Y~Cp~C~~~y~~---------------~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 97 NAYYKCPNCQSKYTF---------------LEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred CcEEECcCCCCEeeH---------------HHHHHhcCCCCcEECCCCCCEEEEc
Confidence 568999966544431 2333321 126899999976543
No 180
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=57.72 E-value=6.3 Score=39.65 Aligned_cols=30 Identities=20% Similarity=0.528 Sum_probs=25.5
Q ss_pred EeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480 207 MRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 207 L~~CG~V~Se~alkevk~~~CpvCg~~f~~ 236 (371)
+-||-||||.+|-+.-....||.|..+...
T Consensus 106 mIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 106 MIPCKHVFCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred ccccchhhhhhhhhcCccccCcCcccHHHH
Confidence 359999999999988778899999987653
No 181
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=57.50 E-value=52 Score=27.19 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=40.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe----CCe-eCC-CCCCcccCCCCCCCCeEEEEeee
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL----NGK-ILD-ESTPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~----~Gk-~L~-D~~tL~~~~~I~~~sTL~L~lrL 79 (371)
+++...+..|||+.|...+..+ .| ..+-||-- ++- +|. .+.|| .+.+|..|-+|-|..|-
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv-~da~L~~gQ~vliE~rn 81 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITV-EDAGLYDGQVVLIEERN 81 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBT-TTTT--TTEEEEEEE--
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccH-HHccCcCCCEEEEEeec
Confidence 5667788899999999999999 88 66788833 222 353 46799 99999999988777764
No 182
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=57.25 E-value=5 Score=39.62 Aligned_cols=46 Identities=22% Similarity=0.576 Sum_probs=38.9
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCC
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHE 232 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~ 232 (371)
..+.||+....+.....-+-.-+|||.+..++++++. ...||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 4556999998887766777777999999999999984 589999987
No 183
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=56.86 E-value=5.3 Score=29.30 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=9.1
Q ss_pred eeEcCCcccccC
Q 017480 188 RFQCPITGLEFN 199 (371)
Q Consensus 188 ~~~CPVT~~e~n 199 (371)
.|.||++++.|+
T Consensus 2 ~f~CP~C~~~~~ 13 (54)
T PF05605_consen 2 SFTCPYCGKGFS 13 (54)
T ss_pred CcCCCCCCCccC
Confidence 478999888654
No 184
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=55.71 E-value=15 Score=37.84 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=46.3
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc--CCCCCceEE--EeCCeeCC-CCCCcccCCCCCCCC
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL--DQSLSSLYF--TLNGKILD-ESTPLFKNPQIAPLS 71 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~--gi~~~~q~L--i~~Gk~L~-D~~tL~~~~~I~~~s 71 (371)
|-||..+|. -+.+......||.+|+..|... +-+..-|-| .|=-|+|. |+.|| .+.||.+-.
T Consensus 308 IQIRLanG~--RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTl-e~AgL~Nsv 374 (380)
T KOG2086|consen 308 IQIRLANGT--RLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTL-EEAGLLNSV 374 (380)
T ss_pred EEEEecCCc--eeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhH-Hhccchhhh
Confidence 556778886 3456777789999999999988 555555555 46678885 56799 999987654
No 185
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=55.44 E-value=13 Score=39.99 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=36.8
Q ss_pred CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-------cCCCCCCCCCcCC
Q 017480 185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-------SSSCLVCHEEFGE 236 (371)
Q Consensus 185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-------~~~CpvCg~~f~~ 236 (371)
+.+...|-++..+--. .+...|-|+||.-|++|.. ...||+|..+.+-
T Consensus 533 nk~~~~C~lc~d~aed----~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAED----YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred ccCceeecccCChhhh----hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 4567889998876543 2346799999999999863 3689999988764
No 186
>PF12773 DZR: Double zinc ribbon
Probab=55.18 E-value=6.8 Score=27.95 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=26.3
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCC
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEM 237 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~ 237 (371)
||-.+..+....+|. ..||..+. ........|+.||......
T Consensus 1 Cp~Cg~~~~~~~~fC--~~CG~~l~---~~~~~~~~C~~Cg~~~~~~ 42 (50)
T PF12773_consen 1 CPHCGTPNPDDAKFC--PHCGTPLP---PPDQSKKICPNCGAENPPN 42 (50)
T ss_pred CCCcCCcCCccccCC--hhhcCChh---hccCCCCCCcCCcCCCcCC
Confidence 666666666655555 56777766 2222346799998876544
No 187
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=54.45 E-value=4.5 Score=36.56 Aligned_cols=40 Identities=20% Similarity=0.505 Sum_probs=26.2
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~ 236 (371)
+.||.|+-+.+....-.++.+ |+++-.. ..|+.||..|..
T Consensus 1 m~cp~c~~~~~~~~~s~~~~~-~~~~~~~-------~~c~~c~~~f~~ 40 (154)
T PRK00464 1 MRCPFCGHPDTRVIDSRPAED-GNAIRRR-------RECLACGKRFTT 40 (154)
T ss_pred CcCCCCCCCCCEeEeccccCC-CCceeee-------eeccccCCcceE
Confidence 369999876654333444445 6655433 479999999974
No 188
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=51.93 E-value=5 Score=41.48 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=0.4
Q ss_pred CCceeEcCCccccc-----------CCceeEEEEeccCccccHHHHHHh-----hcCCCCCCCCC
Q 017480 185 DGIRFQCPITGLEF-----------NGKYRFVAMRTCGHVLSTKALKEV-----KSSSCLVCHEE 233 (371)
Q Consensus 185 ~~~~~~CPVT~~e~-----------ng~~rfV~L~~CG~V~Se~alkev-----k~~~CpvCg~~ 233 (371)
+.++.+|||..-.+ ..+..+||+. ||||.-.-..-.. ....||.|-.+
T Consensus 274 Na~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~-CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 274 NAGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLN-CGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp S----------------------------------------------------------------
T ss_pred hhcCCCCCcCCCccccccccccccccccCceeecc-ccceeeecccccccccccccccCCCcccc
Confidence 45678999964332 2356789885 9999976654321 36789999764
No 189
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=51.15 E-value=3.8 Score=45.64 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=36.8
Q ss_pred EcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCC
Q 017480 190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEM 237 (371)
Q Consensus 190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~ 237 (371)
.||+|.+.|+..- ...-.+|||.|++.||..+. ...||+|-..|.+-
T Consensus 125 ~CP~Ci~s~~DqL-~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQL-EESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhHHHHHHHHHh-hccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 5888888776532 23345899999999999985 56899999999763
No 190
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=51.05 E-value=7.7 Score=28.64 Aligned_cols=17 Identities=18% Similarity=0.503 Sum_probs=12.5
Q ss_pred HHHHHhh-cCCCCCCCCC
Q 017480 217 KALKEVK-SSSCLVCHEE 233 (371)
Q Consensus 217 ~alkevk-~~~CpvCg~~ 233 (371)
..+.++. +..||+|+.+
T Consensus 26 t~f~~Lp~~w~CP~C~a~ 43 (50)
T cd00730 26 TPFEDLPDDWVCPVCGAG 43 (50)
T ss_pred CCHhHCCCCCCCCCCCCc
Confidence 3566665 6799999975
No 191
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=50.64 E-value=59 Score=25.66 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=43.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc----CCCCCceEE-EeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 18 TLTVGANQFETLNHLKRSLLSL----DQSLSSLYF-TLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~----gi~~~~q~L-i~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
+..++......+--+.++-.+. |.|++.--| --+|.-|+-+..+ +||||..+-+|.|.+.
T Consensus 7 Pv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKv-eD~GftngvkLFLsLK 71 (76)
T PF10790_consen 7 PVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKV-EDFGFTNGVKLFLSLK 71 (76)
T ss_pred ceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchh-hhccccccceEEEEee
Confidence 4567766666666665553333 467776666 3578888888999 9999999999988875
No 192
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=50.53 E-value=8.4 Score=23.89 Aligned_cols=7 Identities=29% Similarity=0.785 Sum_probs=3.6
Q ss_pred CCCCCCC
Q 017480 227 CLVCHEE 233 (371)
Q Consensus 227 CpvCg~~ 233 (371)
|+.||.+
T Consensus 16 C~~CG~~ 22 (23)
T PF13240_consen 16 CPNCGTP 22 (23)
T ss_pred hhhhCCc
Confidence 5555544
No 193
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=50.48 E-value=11 Score=38.03 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=55.0
Q ss_pred eecCCCCCCccccccchhhhhhhhccCCCCCCCcchhcccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCC
Q 017480 78 RVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLP 157 (371)
Q Consensus 78 rL~G~~~~~~si~a~~rd~~l~~~~~kk~ek~d~~e~~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~ 157 (371)
|+.+++.|+- |..|+ -.+|.++- +...+. =..|++..+--..|.|+---|++|..-.|+.|+-+++.-
T Consensus 271 ~~~k~~l~~p-~PpPP----h~~~~se~-e~l~~~------~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~C 338 (357)
T KOG0826|consen 271 RKIKSTLDPP-IPPPP----HKQYNSES-ELLPPD------REVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHC 338 (357)
T ss_pred HhhccCCCCC-CCcCC----hhhccccc-ccCCCc------cccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCC
Confidence 4566666765 54444 22344322 222221 256999999999999998889999999999999877655
Q ss_pred CccCccCCCCCcee
Q 017480 158 KQYSYIKGLKDLIN 171 (371)
Q Consensus 158 ~~~~HIksLKDlv~ 171 (371)
|+++.+.+..+++.
T Consensus 339 PVT~~p~~v~~l~r 352 (357)
T KOG0826|consen 339 PVTGYPASVDHLIR 352 (357)
T ss_pred CccCCcchHHHHHH
Confidence 66655555555544
No 194
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.34 E-value=12 Score=38.14 Aligned_cols=61 Identities=16% Similarity=0.299 Sum_probs=42.9
Q ss_pred CCCceeeeeeecCCCCCCCCCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCC
Q 017480 166 LKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHE 232 (371)
Q Consensus 166 LKDlv~Lklt~n~~~~~~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~ 232 (371)
|+++--..|+..... .....|-||..++.-.-+..+ -||+|.|-..|++-.- -..||+|-.
T Consensus 212 l~~~p~~~f~~~~~~-----~~~~~CaIClEdY~~GdklRi-LPC~H~FH~~CIDpWL~~~r~~CPvCK~ 275 (348)
T KOG4628|consen 212 LKKLPVRTFTKGDDE-----DATDTCAICLEDYEKGDKLRI-LPCSHKFHVNCIDPWLTQTRTFCPVCKR 275 (348)
T ss_pred HhhCCcEEecccccc-----CCCceEEEeecccccCCeeeE-ecCCCchhhccchhhHhhcCccCCCCCC
Confidence 445545566654432 222799999999865555555 6999999999999873 245999976
No 195
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=50.29 E-value=47 Score=34.80 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc---CCCCCceEEEe----CCee--CCCCCCcccCCCCCCCCeEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL---DQSLSSLYFTL----NGKI--LDESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~~q~Li~----~Gk~--L~D~~tL~~~~~I~~~sTL~L 75 (371)
|-+-+|+..|. ..++++++++++.|-.+|.+- +..++++.+-- .|.. +..+.|+ .+.|+..|..|.|
T Consensus 1 Mi~rfRsk~G~---~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~-~dlGL~hGqmLyl 76 (571)
T COG5100 1 MIFRFRSKEGQ---RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTP-DDLGLRHGQMLYL 76 (571)
T ss_pred CeEEEecCCCc---eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccCh-hhhccccCcEEEE
Confidence 66789999995 789999999999999888765 34555655532 2331 3456788 9999999999988
Q ss_pred Ee
Q 017480 76 RQ 77 (371)
Q Consensus 76 ~l 77 (371)
..
T Consensus 77 ~y 78 (571)
T COG5100 77 EY 78 (571)
T ss_pred Ee
Confidence 77
No 196
>smart00455 RBD Raf-like Ras-binding domain.
Probab=50.18 E-value=84 Score=24.45 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=38.5
Q ss_pred EEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC--eeCCCC
Q 017480 9 IKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG--KILDES 58 (371)
Q Consensus 9 Vk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G--k~L~D~ 58 (371)
|=.++|+ ...+.+-+..||.++=+.+..+ |+.+++-.|.+.| ++|+=+
T Consensus 4 v~LP~~~--~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~ 54 (70)
T smart00455 4 VHLPDNQ--RTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLN 54 (70)
T ss_pred EECCCCC--EEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecC
Confidence 4456776 5678888899999999999999 9999888888754 677644
No 197
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=50.14 E-value=7.3 Score=37.91 Aligned_cols=43 Identities=16% Similarity=0.501 Sum_probs=35.3
Q ss_pred EcCCcccc--cCCceeEEEEeccCccccHHHHHHhh---cCCCC--CCCC
Q 017480 190 QCPITGLE--FNGKYRFVAMRTCGHVLSTKALKEVK---SSSCL--VCHE 232 (371)
Q Consensus 190 ~CPVT~~e--~ng~~rfV~L~~CG~V~Se~alkevk---~~~Cp--vCg~ 232 (371)
.||||... +|...+|.+.--|=|-||++|+..+= ...|| -||+
T Consensus 12 ~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 12 RCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 69999876 68888776655599999999999984 46899 7887
No 198
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=49.69 E-value=8.8 Score=28.23 Aligned_cols=45 Identities=18% Similarity=0.451 Sum_probs=21.5
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcC
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFG 235 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~ 235 (371)
||++..+|...-.-++-=+||.-++.-++..+. ...||-|-++|+
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 677776664333334445799999999999886 469999999884
No 199
>PRK01777 hypothetical protein; Validated
Probab=49.56 E-value=59 Score=27.01 Aligned_cols=55 Identities=2% Similarity=-0.107 Sum_probs=39.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhccCCCCC--c-----eEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 17 TTLTVGANQFETLNHLKRSLLSLDQSLS--S-----LYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~gi~~~--~-----q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
....+++.+..||.++ |.+.||+.. + ..+.-+|+....+. -|.+|.+|++--.|.
T Consensus 17 ~~~~l~vp~GtTv~da---l~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~------~L~dGDRVeIyrPL~ 78 (95)
T PRK01777 17 YLQRLTLQEGATVEEA---IRASGLLELRTDIDLAKNKVGIYSRPAKLTD------VLRDGDRVEIYRPLL 78 (95)
T ss_pred EEEEEEcCCCCcHHHH---HHHcCCCccCcccccccceEEEeCeECCCCC------cCCCCCEEEEecCCC
Confidence 4578899999999998 555566554 3 35556788776554 458899999876665
No 200
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=49.34 E-value=7.3 Score=26.88 Aligned_cols=42 Identities=31% Similarity=0.592 Sum_probs=25.8
Q ss_pred cCCcc-cccCCce-eEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480 191 CPITG-LEFNGKY-RFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 191 CPVT~-~e~ng~~-rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~ 236 (371)
||+++ ..+.... .+.+.. =|+.+ .++.+....|+.||+.|-.
T Consensus 1 C~~C~~~~~~~~~~~~~~~~-~~~~~---~i~~vp~~~C~~CGE~~~~ 44 (46)
T TIGR03831 1 CPICGGEELEGKTTTETYEY-GGELI---VIENVPALVCPQCGEEYLD 44 (46)
T ss_pred CCCCCCceecceEEEEEEEe-CCEEE---EEeCCCccccccCCCEeeC
Confidence 77774 4566555 444443 33332 3456667789999988754
No 201
>COG5417 Uncharacterized small protein [Function unknown]
Probab=48.94 E-value=95 Score=25.17 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=48.6
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC-----CCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ-----SLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi-----~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L 75 (371)
+=++.-.|. ++.|.++..-+|..|=.-+.+. .| .-.+.+..--++.|.++..| .+|||.+|.-|.+
T Consensus 9 vD~t~y~g~--~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL-~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGG--TYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKL-IDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCc--eEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceE-EeccccCCCEEEe
Confidence 334666775 7888888778887776554444 22 22567888889999999999 9999999997754
No 202
>PF14353 CpXC: CpXC protein
Probab=48.38 E-value=32 Score=29.34 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=0.0
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh------cCCCCCCCCCcC-----------CCceEEecCChHHHH
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK------SSSCLVCHEEFG-----------EMDKILINGNEEEIS 250 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk------~~~CpvCg~~f~-----------~~DiI~Lnp~~ee~~ 250 (371)
...||.|+..|. +-+|+.=++-....+++-- ...||.||..|. ..=+|.+-|...+.+
T Consensus 1 ~itCP~C~~~~~-----~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~D~~~~~~i~~~P~~~~~~ 75 (128)
T PF14353_consen 1 EITCPHCGHEFE-----FEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYHDPEKKFMIYYFPDNQDEE 75 (128)
T ss_pred CcCCCCCCCeeE-----EEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEEcCCCCEEEEEcCCcchHH
Q ss_pred HHHHHHHHHHH
Q 017480 251 VLRERMEEEKL 261 (371)
Q Consensus 251 ~l~~rm~~~~a 261 (371)
...+-+.....
T Consensus 76 ~~~~~~~~~~~ 86 (128)
T PF14353_consen 76 EQEQFLGDLSQ 86 (128)
T ss_pred HHHHHHHhhcc
No 203
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=48.29 E-value=15 Score=30.23 Aligned_cols=45 Identities=18% Similarity=0.456 Sum_probs=31.9
Q ss_pred cCCcccccCCc---------eeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcC
Q 017480 191 CPITGLEFNGK---------YRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFG 235 (371)
Q Consensus 191 CPVT~~e~ng~---------~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~ 235 (371)
|+|++..|+|. .--+++-.|||.|-..+|.+-- ...||.|-.+|.
T Consensus 24 CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 24 CGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 66666666532 1123456799999999999863 358999999885
No 204
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=48.15 E-value=23 Score=27.01 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=34.7
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~ 236 (371)
|-.+.+.+-....-.+|-+=-|-|+..+.+.+-...||+||..|..
T Consensus 8 CE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~~CPNCgGelv~ 53 (57)
T PF06906_consen 8 CECCDKDLPPDSPEAYICSFECTFCADCAETMLNGVCPNCGGELVR 53 (57)
T ss_pred ccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcCcCcCCCCcccc
Confidence 5555666655554556666678899999999988899999998864
No 205
>PHA02768 hypothetical protein; Provisional
Probab=48.09 E-value=13 Score=28.18 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=28.1
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHH-h----hcCCCCCCCCCcCC-CceEEecCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-V----KSSSCLVCHEEFGE-MDKILINGN 245 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-v----k~~~CpvCg~~f~~-~DiI~Lnp~ 245 (371)
-|.||.+++.|+-. .+|.. + +...|..|++.|.. ...|.|...
T Consensus 5 ~y~C~~CGK~Fs~~---------------~~L~~H~r~H~k~~kc~~C~k~f~~~s~l~~~~~~ 53 (55)
T PHA02768 5 GYECPICGEIYIKR---------------KSMITHLRKHNTNLKLSNCKRISLRTGEYIEIKAE 53 (55)
T ss_pred ccCcchhCCeeccH---------------HHHHHHHHhcCCcccCCcccceecccceeEEEecc
Confidence 47899999988642 22211 1 35689999999874 456666543
No 206
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.63 E-value=8.5 Score=38.05 Aligned_cols=55 Identities=16% Similarity=0.356 Sum_probs=36.5
Q ss_pred eEcCCcccccCCce------eEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCCCceEEecC
Q 017480 189 FQCPITGLEFNGKY------RFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGEMDKILING 244 (371)
Q Consensus 189 ~~CPVT~~e~ng~~------rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~~DiI~Lnp 244 (371)
-+|.||+..+.-.. -=.|--.|+|||-|-|++-.. ...||.|-+..+-. ...=||
T Consensus 225 ~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~-rmfsnp 289 (328)
T KOG1734|consen 225 SVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK-RMFSNP 289 (328)
T ss_pred chhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh-hhccCc
Confidence 47999998764211 112334699999999999873 56899997765422 344455
No 207
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=45.12 E-value=10 Score=35.77 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=48.4
Q ss_pred CCeeeCCCCcee-cHHHHHHHHHcCCCCCccCccCCCCCceeeeeee-cCCCCCCCCCceeEcCCcccccCCceeEEEEe
Q 017480 131 EPCVIDKLGTIF-NKEALVHALLSKNLPKQYSYIKGLKDLINVKLSR-VPGAEENGDGIRFQCPITGLEFNGKYRFVAMR 208 (371)
Q Consensus 131 ~PIV~~~lG~LY-nKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~-n~~~~~~~~~~~~~CPVT~~e~ng~~rfV~L~ 208 (371)
+|||.-+.-.+| ++|..|..|-.-+.- -| =.++++.. .|+..+ ....-|+||.||+.|+++++
T Consensus 38 ~PVlF~rdK~I~qs~e~ai~~lE~e~Kl---Wr------eteI~I~~g~p~VNE-~TkkIYICPFTGKVF~DNt~----- 102 (238)
T PF10915_consen 38 QPVLFVRDKIIFQSAEDAIRILEEEGKL---WR------ETEIKIQSGKPSVNE-QTKKIYICPFTGKVFGDNTH----- 102 (238)
T ss_pred CceeeecchhhccCHHHHHHHHHHhcch---he------eeeEEEecCCccccc-ccceEEEcCCcCccccCCCC-----
Confidence 577877887777 678888877753211 00 11222221 111111 12457999999999987642
Q ss_pred ccCccccHHHHHHhhcCCCCCCCCCc
Q 017480 209 TCGHVLSTKALKEVKSSSCLVCHEEF 234 (371)
Q Consensus 209 ~CG~V~Se~alkevk~~~CpvCg~~f 234 (371)
-=...|+-..-+ .||..-+..
T Consensus 103 ----~nPQDAIYDWvS-kCPeN~ER~ 123 (238)
T PF10915_consen 103 ----PNPQDAIYDWVS-KCPENTERQ 123 (238)
T ss_pred ----CChHHHHHHHHh-hCCccchhc
Confidence 224666666554 588765543
No 208
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=44.78 E-value=1.8e+02 Score=25.11 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=38.8
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC-----CCCceEE
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ-----SLSSLYF 48 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi-----~~~~q~L 48 (371)
|.-|-.|.+..+++..+-.|-|++++|+.++-+.|.++ .+ .+..+.|
T Consensus 21 ~gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FAL 73 (112)
T cd01782 21 HGVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSL 73 (112)
T ss_pred eeEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEE
Confidence 34589999999999999999999999999999988888 63 2446655
No 209
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=44.31 E-value=1.1e+02 Score=24.45 Aligned_cols=46 Identities=24% Similarity=0.192 Sum_probs=32.7
Q ss_pred cCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC--eeCCCC
Q 017480 11 SPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG--KILDES 58 (371)
Q Consensus 11 ~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G--k~L~D~ 58 (371)
-++|+ +-.+.+-+.+||.++=.++.++ |++++.--+++.| +||+=+
T Consensus 6 LPdg~--~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~ 54 (73)
T cd01817 6 LPDGS--TTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLD 54 (73)
T ss_pred CCCCC--eEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccC
Confidence 35665 3357888899999999999999 9766655444444 677533
No 210
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=43.86 E-value=16 Score=37.81 Aligned_cols=44 Identities=25% Similarity=0.512 Sum_probs=31.5
Q ss_pred EcCCccccc-C-CceeE-------EEEeccCccccHHHHHHhh--cCCCCCCCCC
Q 017480 190 QCPITGLEF-N-GKYRF-------VAMRTCGHVLSTKALKEVK--SSSCLVCHEE 233 (371)
Q Consensus 190 ~CPVT~~e~-n-g~~rf-------V~L~~CG~V~Se~alkevk--~~~CpvCg~~ 233 (371)
.|-||..|| - ++... ==--||||.+--.|||..- +-.||+|-.|
T Consensus 289 ~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 289 TCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred eEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCc
Confidence 688888884 2 21100 0013799999999999984 6789999987
No 211
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.51 E-value=11 Score=27.09 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=11.6
Q ss_pred hhcCCCCCCCCCcC
Q 017480 222 VKSSSCLVCHEEFG 235 (371)
Q Consensus 222 vk~~~CpvCg~~f~ 235 (371)
+.+..|++||.||+
T Consensus 6 lp~K~C~~C~rpf~ 19 (42)
T PF10013_consen 6 LPSKICPVCGRPFT 19 (42)
T ss_pred CCCCcCcccCCcch
Confidence 45678999999997
No 212
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=42.90 E-value=15 Score=38.31 Aligned_cols=43 Identities=26% Similarity=0.560 Sum_probs=35.0
Q ss_pred eeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCCCceEEecC
Q 017480 202 YRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGEMDKILING 244 (371)
Q Consensus 202 ~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~~DiI~Lnp 244 (371)
-+=|-|-||||.+|..||.... ...||.|--..+-..-|+|.|
T Consensus 379 dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid~ 425 (563)
T KOG1785|consen 379 DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIIDP 425 (563)
T ss_pred CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccceeeec
Confidence 3457788999999999999886 357999988887777777775
No 213
>PLN02195 cellulose synthase A
Probab=42.78 E-value=23 Score=40.67 Aligned_cols=49 Identities=24% Similarity=0.385 Sum_probs=38.6
Q ss_pred eEcCCcccccC---CceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCC
Q 017480 189 FQCPITGLEFN---GKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEM 237 (371)
Q Consensus 189 ~~CPVT~~e~n---g~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~ 237 (371)
-+|-|+|.+.+ +..-||+---||--+|..|++--. +..||+|+..|+++
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~ 61 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAE 61 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccc
Confidence 37999988753 234799999999999999996432 46899999999943
No 214
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.76 E-value=14 Score=36.86 Aligned_cols=73 Identities=18% Similarity=0.347 Sum_probs=47.5
Q ss_pred ccCccCC-CCCceeeeeeecCCCCC------CCCCceeEcCCcccccCCceeEEEEeccCccccHHHH-HHhh-cCCCCC
Q 017480 159 QYSYIKG-LKDLINVKLSRVPGAEE------NGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKAL-KEVK-SSSCLV 229 (371)
Q Consensus 159 ~~~HIks-LKDlv~Lklt~n~~~~~------~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~al-kevk-~~~Cpv 229 (371)
.|-|-++ -|.=-.|++.++.+-+. +....+|-|-|++..|-. ++ .-.|||-|++.|. +.+. ...|.+
T Consensus 205 kFlh~r~DyK~GWqi~~e~d~~ke~~~~~~~D~~~~Pf~c~icr~~f~~--pV--vt~c~h~fc~~ca~~~~qk~~~c~v 280 (313)
T KOG1813|consen 205 KFLHDRSDYKAGWQIEFEWDSAKEKKRVKIEDIELLPFKCFICRKYFYR--PV--VTKCGHYFCEVCALKPYQKGEKCYV 280 (313)
T ss_pred hhhhhhhhccccceeehhhhccccccceecCCcccCCcccccccccccc--ch--hhcCCceeehhhhccccccCCccee
Confidence 3445443 23336677777654321 224568899999998753 22 2579999999874 4444 589999
Q ss_pred CCCCcC
Q 017480 230 CHEEFG 235 (371)
Q Consensus 230 Cg~~f~ 235 (371)
|++...
T Consensus 281 C~~~t~ 286 (313)
T KOG1813|consen 281 CSQQTH 286 (313)
T ss_pred cccccc
Confidence 998654
No 215
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.21 E-value=35 Score=31.81 Aligned_cols=46 Identities=22% Similarity=0.333 Sum_probs=35.4
Q ss_pred CCcchhcccCCccccCCCCCCCCCe-eeCCCCceecHHHHHHHHHcC
Q 017480 109 IDPNEQRLSKWCNCALSNEPLREPC-VIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 109 ~d~~e~~~~~w~~CaLS~~PL~~PI-V~~~lG~LYnKeaILe~LL~k 154 (371)
.|..+.+...-..|.+.+.+..+=+ |+..-|++|.++.|-++|-..
T Consensus 121 k~v~~~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~ 167 (187)
T KOG0320|consen 121 KDVDPLRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT 167 (187)
T ss_pred ccccccccccccCCCceecchhhccccccccchhHHHHHHHHHHHhC
Confidence 3444444455688999999997533 889999999999999887654
No 216
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=38.26 E-value=58 Score=26.62 Aligned_cols=44 Identities=16% Similarity=-0.014 Sum_probs=32.9
Q ss_pred EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC
Q 017480 6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG 52 (371)
Q Consensus 6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G 52 (371)
|-.| ...|.+|-+....++ |-+.|+++|+.. .+|++.+.++|--
T Consensus 2 ~fKv-~~~g~~RRf~~~~~p--t~~~L~~kl~~Lf~lp~~~~~vtYiD 46 (82)
T cd06397 2 QFKS-SFLGDTRRIVFPDIP--TWEALASKLENLYNLPEIKVGVTYID 46 (82)
T ss_pred eEEE-EeCCceEEEecCCCc--cHHHHHHHHHHHhCCChhHeEEEEEc
Confidence 3344 345655666666655 999999999999 9999889888843
No 217
>PF15616 TerY-C: TerY-C metal binding domain
Probab=37.85 E-value=14 Score=32.72 Aligned_cols=37 Identities=24% Similarity=0.542 Sum_probs=26.7
Q ss_pred EcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCc
Q 017480 190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEF 234 (371)
Q Consensus 190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f 234 (371)
=||-++-.+ .+++-.||.|++...=. ...||.||..-
T Consensus 79 gCP~CGn~~-----~fa~C~CGkl~Ci~g~~---~~~CPwCg~~g 115 (131)
T PF15616_consen 79 GCPHCGNQY-----AFAVCGCGKLFCIDGEG---EVTCPWCGNEG 115 (131)
T ss_pred CCCCCcChh-----cEEEecCCCEEEeCCCC---CEECCCCCCee
Confidence 599997543 34455999999977632 56899999743
No 218
>PF06093 Spt4: Spt4/RpoE2 zinc finger; InterPro: IPR022800 This entry consists of several eukaryotic transcription elongation Spt4 proteins as well as archaebacterial RpoE2 []. Three transcription-elongation factors Spt4, Spt5, and Spt6 are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. Spt4 and Spt5 are tightly associated in a complex, while the physical association of the Spt4-Spt5 complex with Spt6 is considerably weaker. It has been demonstrated that Spt4, Spt5, and Spt6 play roles in transcription elongation in both yeast and humans including a role in activation by Tat. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles []. RpoE2 is one of 13 subunits in the archaeal RNA polymerase. These proteins contain a C4-type zinc finger, and the structure has been solved in []. The structure reveals that Spt4-Spt5 binding is governed by an acid-dipole interaction between Spt5 and Spt4, and the complex binds to and travels along the elongating RNA polymerase. The Spt4-Spt5 complex is likely to be an ancient, core component of the transcription elongation machinery. ; PDB: 2EXU_A 3H7H_A 3LPE_F 3P8B_A 1RYQ_A 3QQC_E.
Probab=37.02 E-value=19 Score=28.88 Aligned_cols=41 Identities=7% Similarity=0.307 Sum_probs=24.8
Q ss_pred eccCccccHHHHHHhhcCCCCCC-----------CCCcCCCc----eEEecCChHHHHH
Q 017480 208 RTCGHVLSTKALKEVKSSSCLVC-----------HEEFGEMD----KILINGNEEEISV 251 (371)
Q Consensus 208 ~~CG~V~Se~alkevk~~~CpvC-----------g~~f~~~D----iI~Lnp~~ee~~~ 251 (371)
..|+-|.+.+-+.+ ..||+| +...+..+ |+.++|+..++++
T Consensus 5 ~~C~~i~t~~qF~~---~gCpnC~~l~~~~~~~~~~~~tT~~f~G~i~i~~P~~SwvAk 60 (77)
T PF06093_consen 5 LRCRLIKTEDQFRD---EGCPNCPFLQMKGDRDRVSDCTTPNFEGMIAIMDPEKSWVAK 60 (77)
T ss_dssp TTT-BEECCCHHHH---H--TTTHHHH-TCHCHHCHCCEESSEEEEEEES-TTT-HHHH
T ss_pred ccCCcccCHhHccC---CCCCCCccccccCCcCcccccCCCCCcCEEEECCCchhHHHH
Confidence 46888888887765 589999 44444333 7888898777753
No 219
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=36.13 E-value=17 Score=36.79 Aligned_cols=54 Identities=22% Similarity=0.384 Sum_probs=34.2
Q ss_pred CceeEcCCccccc-----------CCceeEEEEeccCccccHHHHHH-----hhcCCCCCCCCCcCCCceEEec
Q 017480 186 GIRFQCPITGLEF-----------NGKYRFVAMRTCGHVLSTKALKE-----VKSSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 186 ~~~~~CPVT~~e~-----------ng~~rfV~L~~CG~V~Se~alke-----vk~~~CpvCg~~f~~~DiI~Ln 243 (371)
.++-+|||..-.+ +-+..+|||. ||||--+--.-. -++..||+|-..= -+|+|-
T Consensus 288 A~RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~-CGHV~G~H~WG~~e~~g~~~r~CPmC~~~g---p~V~L~ 357 (429)
T KOG3842|consen 288 AARPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLN-CGHVHGYHNWGVRENTGQRERECPMCRVVG---PYVPLW 357 (429)
T ss_pred ccCCCCCcccceeecccccccccccccCCeEEEe-ccccccccccccccccCcccCcCCeeeeec---ceeeee
Confidence 4567899965443 3356799985 999975543221 1357899996532 256654
No 220
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.82 E-value=43 Score=34.30 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=21.1
Q ss_pred EcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCC
Q 017480 190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEE 233 (371)
Q Consensus 190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~ 233 (371)
.|=|+..+.-+ ++ +.|||||.+=....+ .-..||+|-..
T Consensus 307 lcVVcl~e~~~---~~-fvpcGh~ccct~cs~-~l~~CPvCR~r 345 (355)
T KOG1571|consen 307 LCVVCLDEPKS---AV-FVPCGHVCCCTLCSK-HLPQCPVCRQR 345 (355)
T ss_pred ceEEecCCccc---ee-eecCCcEEEchHHHh-hCCCCchhHHH
Confidence 34444444332 33 459999987222222 23459999653
No 221
>PRK04023 DNA polymerase II large subunit; Validated
Probab=35.49 E-value=25 Score=40.54 Aligned_cols=55 Identities=27% Similarity=0.321 Sum_probs=40.1
Q ss_pred CceeEcCCcccccCCceeEEEEe-ccCcc-----ccHHHHHHhhcCCCCCCCCCcCCCceEEecCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMR-TCGHV-----LSTKALKEVKSSSCLVCHEEFGEMDKILINGN 245 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~-~CG~V-----~Se~alkevk~~~CpvCg~~f~~~DiI~Lnp~ 245 (371)
.+...||-|+... +...- .||.. +|.+|-.+.....||.||.+-...-.+.||..
T Consensus 624 Vg~RfCpsCG~~t-----~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~~s~~~i~l~ 684 (1121)
T PRK04023 624 IGRRKCPSCGKET-----FYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPYSKRKIDLK 684 (1121)
T ss_pred ccCccCCCCCCcC-----CcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCccceEEecHH
Confidence 3456899998874 12223 38854 78888777777889999999888888888873
No 222
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=34.86 E-value=26 Score=38.58 Aligned_cols=25 Identities=32% Similarity=0.704 Sum_probs=18.4
Q ss_pred eEcCCcccccCCceeEEEEeccCcccc
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLS 215 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~S 215 (371)
.+||-|+.+.....+|+ ..||.-+.
T Consensus 2 ~~Cp~Cg~~n~~~akFC--~~CG~~l~ 26 (645)
T PRK14559 2 LICPQCQFENPNNNRFC--QKCGTSLT 26 (645)
T ss_pred CcCCCCCCcCCCCCccc--cccCCCCC
Confidence 36888888877777777 66887663
No 223
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=34.48 E-value=30 Score=40.86 Aligned_cols=55 Identities=25% Similarity=0.356 Sum_probs=33.0
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccc-----cHHHHHHhh-----cCCCCCCCCCcCCCceEEecCC
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVL-----STKALKEVK-----SSSCLVCHEEFGEMDKILINGN 245 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~-----Se~alkevk-----~~~CpvCg~~f~~~DiI~Lnp~ 245 (371)
+.+.||=||.+... .|+ ..||... |..|=.++. ...||.||.+....-.+.||..
T Consensus 666 ~~rkCPkCG~~t~~--~fC--P~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~ 730 (1337)
T PRK14714 666 GRRRCPSCGTETYE--NRC--PDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVK 730 (1337)
T ss_pred EEEECCCCCCcccc--ccC--cccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHH
Confidence 35788888876322 122 3466443 223322332 2379999988888777888874
No 224
>PLN02189 cellulose synthase
Probab=34.10 E-value=32 Score=39.81 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=38.8
Q ss_pred ceeEcCCcccccC---CceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcC
Q 017480 187 IRFQCPITGLEFN---GKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFG 235 (371)
Q Consensus 187 ~~~~CPVT~~e~n---g~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~ 235 (371)
+..+|.||+.+.+ +...||+---||-=+|..|++--. +..||.|+..|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999864 234789888899888999996433 568999999998
No 225
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=33.90 E-value=27 Score=39.10 Aligned_cols=42 Identities=38% Similarity=0.680 Sum_probs=33.6
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLV 229 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~Cpv 229 (371)
...|.|.+|.+...|..-|+ -.||||+-..|++|. ....||-
T Consensus 1026 ~~~~~C~~C~l~V~gss~~C--g~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1026 GFTFQCAICHLAVRGSSNFC--GTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cceeeeeeEeeEeeccchhh--ccccccccHHHHHHHHhcCCcCCC
Confidence 45688999999998877666 469999999999997 3457775
No 226
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=33.80 E-value=62 Score=25.01 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=11.1
Q ss_pred cCCCCCCCCCcCCC
Q 017480 224 SSSCLVCHEEFGEM 237 (371)
Q Consensus 224 ~~~CpvCg~~f~~~ 237 (371)
...|++||++..++
T Consensus 8 H~HC~VCg~aIp~d 21 (64)
T COG4068 8 HRHCVVCGKAIPPD 21 (64)
T ss_pred CccccccCCcCCCc
Confidence 46899999997654
No 227
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=33.29 E-value=1.4e+02 Score=24.15 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHhccCCCCCceEEEeCCeeCC--C--------CCCcccCCCCCCCCeEEE
Q 017480 26 FETLNHLKRSLLSLDQSLSSLYFTLNGKILD--E--------STPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 26 ~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~--D--------~~tL~~~~~I~~~sTL~L 75 (371)
..|+.+|-.+|....+....-.+.++|..|- + ..+| +++||.+++.|.+
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L-~elgi~~gs~L~v 66 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKL-SELGIVNGSILTV 66 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBG-GGGT--TT-EEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCCh-hHcCCCCCCEEEE
Confidence 5899999998776533333333333555551 1 3577 8888888886654
No 228
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=32.37 E-value=45 Score=32.21 Aligned_cols=85 Identities=28% Similarity=0.375 Sum_probs=58.6
Q ss_pred CCCceEEEeCCee--CCCCCCcccCCCCCCCCeEEEEeeecCCCCCCccccccchhhhhhhhcc-CCCCCCCcchhcccC
Q 017480 42 SLSSLYFTLNGKI--LDESTPLFKNPQIAPLSTLYLRQRVFGGGGDGGATGAESRDCYLNMYAE-KKPDKIDPNEQRLSK 118 (371)
Q Consensus 42 ~~~~q~Li~~Gk~--L~D~~tL~~~~~I~~~sTL~L~lrL~G~~~~~~si~a~~rd~~l~~~~~-kk~ek~d~~e~~~~~ 118 (371)
..+.++|.|.|++ +-.+-.| +|.++.++.+ +|--+-|-|| +|++-+. -.|.+
T Consensus 5 ~~~~~sl~y~g~~~~~le~vsL----~ia~ge~vv~----lGpSGcGKTT-------LLnl~AGf~~P~~---------- 59 (259)
T COG4525 5 NVSHLSLSYEGKPRSALEDVSL----TIASGELVVV----LGPSGCGKTT-------LLNLIAGFVTPSR---------- 59 (259)
T ss_pred ehhheEEecCCcchhhhhccce----eecCCCEEEE----EcCCCccHHH-------HHHHHhcCcCccc----------
Confidence 3578899999999 3233334 6777776544 7877778888 8887443 22221
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k 154 (371)
-.-.|-..|+.-| .-..|-+|-++++++||=-.
T Consensus 60 -G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 60 -GSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred -ceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 1123567788889 66899999999999998643
No 229
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=32.20 E-value=11 Score=29.94 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=19.5
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhh-cCCCCCCCCCcC
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-SSSCLVCHEEFG 235 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-~~~CpvCg~~f~ 235 (371)
..||.+..+|. |.-|+..+..+-+.+. ...||.|+.+..
T Consensus 2 ~~CP~C~~~L~--------~~~~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELE--------WQGGHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEE--------EETTEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccE--------EeCCEEECccccccceecccCCCcccHHH
Confidence 35888887765 3335555666666553 457888888764
No 230
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.90 E-value=82 Score=27.97 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=43.1
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcC--CC------ce----EEecCChHHHHHHHH
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFG--EM------DK----ILINGNEEEISVLRE 254 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~--~~------Di----I~Lnp~~ee~~~l~~ 254 (371)
....||++.-.+.|.+..-.+..=|+=+- ...-|++||.+|- +. .+ -.||| +|++++++
T Consensus 38 ti~qcp~csasirgd~~vegvlglg~dye-------~psfchncgs~fpwterkiaga~elvea~~~l~p--devqqf~t 108 (160)
T COG4306 38 TITQCPICSASIRGDYYVEGVLGLGGDYE-------PPSFCHNCGSRFPWTERKIAGAVELVEAGENLNP--DEVQQFRT 108 (160)
T ss_pred HHhcCCccCCcccccceeeeeeccCCCCC-------CcchhhcCCCCCCcHHHHHhHHHHHHHccccCCH--HHHHHHHh
Confidence 45689999999998776655555665432 1356999999985 11 11 12344 78888888
Q ss_pred HHHHHH
Q 017480 255 RMEEEK 260 (371)
Q Consensus 255 rm~~~~ 260 (371)
-|-++-
T Consensus 109 dlt~lt 114 (160)
T COG4306 109 DLTDLT 114 (160)
T ss_pred hHHHHh
Confidence 876643
No 231
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=31.47 E-value=42 Score=29.31 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=31.1
Q ss_pred EcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCc
Q 017480 22 GANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPL 61 (371)
Q Consensus 22 ~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL 61 (371)
=|..+.||+++..-|..+ ++++++..|..++..+..+.++
T Consensus 46 lVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~m 86 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATV 86 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchH
Confidence 477889999999989888 8999887777777555555444
No 232
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=31.43 E-value=2.5e+02 Score=21.78 Aligned_cols=52 Identities=13% Similarity=-0.005 Sum_probs=34.7
Q ss_pred EEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe--CCeeCCCCCCc
Q 017480 8 FIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL--NGKILDESTPL 61 (371)
Q Consensus 8 FVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~--~Gk~L~D~~tL 61 (371)
.|=-++|+ +..+.+-+.+||.+.=+.+..+ |+.++.-.+.. ..++|+-+...
T Consensus 4 ~v~LP~~q--~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~ 58 (71)
T PF02196_consen 4 RVHLPNGQ--RTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDS 58 (71)
T ss_dssp EEEETTTE--EEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBG
T ss_pred EEECCCCC--EEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCce
Confidence 34457776 4567888899999999999999 88776655533 56777766544
No 233
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=30.90 E-value=33 Score=25.01 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=9.8
Q ss_pred ccHHHHHHhh-cCCCCCCCCC
Q 017480 214 LSTKALKEVK-SSSCLVCHEE 233 (371)
Q Consensus 214 ~Se~alkevk-~~~CpvCg~~ 233 (371)
-.-..+.++. +..||+|+.+
T Consensus 23 ~pGt~F~~Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 23 PPGTPFEDLPDDWVCPVCGAP 43 (47)
T ss_dssp -TT--GGGS-TT-B-TTTSSB
T ss_pred CCCCCHHHCCCCCcCcCCCCc
Confidence 3344566665 5699999865
No 234
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=30.54 E-value=13 Score=41.11 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=43.4
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCCCceEEecCChHHH
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGEMDKILINGNEEEI 249 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~~DiI~Lnp~~ee~ 249 (371)
+.|+++.. ..-+++-+|||+++..|+.+.- ...||.|-....+.+.+...|....+
T Consensus 455 ~~c~ic~~-----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~ 514 (674)
T KOG1001|consen 455 HWCHICCD-----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSII 514 (674)
T ss_pred cccccccc-----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchh
Confidence 78999877 3346677899999999999873 34799999988888777766655443
No 235
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=30.19 E-value=52 Score=34.52 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=30.7
Q ss_pred CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCCCc
Q 017480 185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGEMD 238 (371)
Q Consensus 185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~~D 238 (371)
+...|.||+|.+.|+ +-.|+.-+. ...|-.|+.+..+++
T Consensus 125 ~~~~Y~Cp~C~kkyt---------------~Lea~~L~~~~~~~F~C~~C~gelveDe 167 (436)
T KOG2593|consen 125 NVAGYVCPNCQKKYT---------------SLEALQLLDNETGEFHCENCGGELVEDE 167 (436)
T ss_pred ccccccCCccccchh---------------hhHHHHhhcccCceEEEecCCCchhccc
Confidence 356799999999887 367777765 468999999987654
No 236
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.33 E-value=66 Score=31.10 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=33.8
Q ss_pred ccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC
Q 017480 116 LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 116 ~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k 154 (371)
...++-|-|.+.--++|||. .-|+||.=-.|-+||..+
T Consensus 44 ~~~~FdCNICLd~akdPVvT-lCGHLFCWpClyqWl~~~ 81 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVT-LCGHLFCWPCLYQWLQTR 81 (230)
T ss_pred CCCceeeeeeccccCCCEEe-ecccceehHHHHHHHhhc
Confidence 46678999999999999877 589999999999999875
No 237
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=28.87 E-value=64 Score=33.19 Aligned_cols=63 Identities=11% Similarity=-0.000 Sum_probs=47.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCC--CCcccCCCCCCCCeEEEEeeecCCCCC
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDES--TPLFKNPQIAPLSTLYLRQRVFGGGGD 85 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~--~tL~~~~~I~~~sTL~L~lrL~G~~~~ 85 (371)
...++|+..-.+.++++-+.-- |+..+..-|+|++.+|.+. ..| ..+|+..+.+ ++|++--.|
T Consensus 14 ~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l-~Q~g~~~~ds----l~lr~ks~d 79 (380)
T KOG0012|consen 14 KFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGL-TQIGLKDGDS----LALRCKSSD 79 (380)
T ss_pred eeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhh-hhccccccee----EeccCCCCC
Confidence 4567788788999999977766 9999999999999999754 444 8888876664 444544333
No 238
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=28.32 E-value=34 Score=19.59 Aligned_cols=9 Identities=33% Similarity=1.102 Sum_probs=3.2
Q ss_pred CCCCCCCcC
Q 017480 227 CLVCHEEFG 235 (371)
Q Consensus 227 CpvCg~~f~ 235 (371)
|++|+..|.
T Consensus 3 C~~C~~~~~ 11 (24)
T PF13894_consen 3 CPICGKSFR 11 (24)
T ss_dssp -SSTS-EES
T ss_pred CcCCCCcCC
Confidence 444444443
No 239
>KOG0402 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=28.18 E-value=19 Score=29.55 Aligned_cols=26 Identities=23% Similarity=0.577 Sum_probs=20.4
Q ss_pred CCceeEcCCcccccCCceeEEEEeccC
Q 017480 185 DGIRFQCPITGLEFNGKYRFVAMRTCG 211 (371)
Q Consensus 185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG 211 (371)
..+.|.|+.+++.-= +-..|.||.||
T Consensus 33 Qhaky~CsfCGK~~v-KR~AvGiW~C~ 58 (92)
T KOG0402|consen 33 QHAKYTCSFCGKKTV-KRKAVGIWKCG 58 (92)
T ss_pred Hhhhhhhhhcchhhh-hhhceeEEecC
Confidence 367899999998622 45689999988
No 240
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.92 E-value=17 Score=26.96 Aligned_cols=12 Identities=33% Similarity=0.872 Sum_probs=10.5
Q ss_pred cCCCCCCCCCcC
Q 017480 224 SSSCLVCHEEFG 235 (371)
Q Consensus 224 ~~~CpvCg~~f~ 235 (371)
...||+|+.||.
T Consensus 12 ~KICpvCqRPFs 23 (54)
T COG4338 12 DKICPVCQRPFS 23 (54)
T ss_pred hhhhhhhcCchH
Confidence 568999999996
No 241
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.54 E-value=77 Score=30.79 Aligned_cols=60 Identities=27% Similarity=0.451 Sum_probs=39.4
Q ss_pred cCCccccc--CCceeEEEEeccCccccHHHHHHhh----------cCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHH
Q 017480 191 CPITGLEF--NGKYRFVAMRTCGHVLSTKALKEVK----------SSSCLVCHEEFGEMDKILINGNEEEISVLRERMEE 258 (371)
Q Consensus 191 CPVT~~e~--ng~~rfV~L~~CG~V~Se~alkevk----------~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~ 258 (371)
|-+++..+ +..+|.| |=|+|-.+||.|-. ...||-|..+...- +|--.--.+.||+.|..
T Consensus 53 C~LC~t~La~gdt~RLv----CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp----~NlvsPva~aLre~L~q 124 (299)
T KOG3970|consen 53 CRLCNTPLASGDTTRLV----CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP----INLVSPVAEALREQLKQ 124 (299)
T ss_pred CceeCCccccCcceeeh----hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC----ccccchhHHHHHHHHHh
Confidence 55555554 3456766 89999999999963 46899999876532 22222334677777743
No 242
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=27.33 E-value=1e+02 Score=25.00 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=31.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC
Q 017480 17 TTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG 52 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G 52 (371)
-|++|.+....+.++|...|.++ ..+++...|.|.-
T Consensus 7 fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~ 43 (78)
T cd06411 7 FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecC
Confidence 36788999999999999999999 9999999998854
No 243
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=27.26 E-value=30 Score=30.60 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=17.2
Q ss_pred ccCccccHHHHHHhhcCCCCCCCCCc
Q 017480 209 TCGHVLSTKALKEVKSSSCLVCHEEF 234 (371)
Q Consensus 209 ~CG~V~Se~alkevk~~~CpvCg~~f 234 (371)
.||.||..-...-++ -||.||-.+
T Consensus 6 ~Cg~~f~dgs~eil~--GCP~CGg~k 29 (131)
T PF09845_consen 6 KCGRVFEDGSKEILS--GCPECGGNK 29 (131)
T ss_pred cCCCCcCCCcHHHHc--cCcccCCcc
Confidence 599999866655333 599999644
No 244
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=27.08 E-value=55 Score=29.21 Aligned_cols=48 Identities=23% Similarity=0.543 Sum_probs=36.8
Q ss_pred ceeEcCCcccccCCceeEEEEec---cCccccHHHHHHh-h----cCCCCCCCCCcCCC
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRT---CGHVLSTKALKEV-K----SSSCLVCHEEFGEM 237 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~---CG~V~Se~alkev-k----~~~CpvCg~~f~~~ 237 (371)
.-|.|-|++...+.. || |.| ||--++.-+.-.+ + -.+||+|-..|+..
T Consensus 79 ~lYeCnIC~etS~ee-~F--LKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEE-RF--LKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchh-hc--CCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 578999998776654 34 466 9988888888776 2 46999999999864
No 245
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=26.80 E-value=2.9e+02 Score=23.11 Aligned_cols=62 Identities=18% Similarity=0.093 Sum_probs=41.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcc-----C--CCCC-ceEEEeCCee--CCCCCCcccCCC-----CCCCCeEEEEeee
Q 017480 17 TTLTVGANQFETLNHLKRSLLSL-----D--QSLS-SLYFTLNGKI--LDESTPLFKNPQ-----IAPLSTLYLRQRV 79 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~-----g--i~~~-~q~Li~~Gk~--L~D~~tL~~~~~-----I~~~sTL~L~lrL 79 (371)
.++++.++.++|+.+|-+.+..+ + -+++ ++.|--.|+. |..+..| .+|. |..+.+++|+|..
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L-~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPL-GSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeee-echHHHHHHHhcCCCceEEEEe
Confidence 46889999999999998876653 1 2333 7888777763 3345566 5554 5566777777764
No 246
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.63 E-value=17 Score=37.33 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=41.2
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhc---CCCCCCCCCcCCCce
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS---SSCLVCHEEFGEMDK 239 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~---~~CpvCg~~f~~~Di 239 (371)
.+...|-++|..|+.. ..=.+.|-|+|+...+|..++. -.||..++.|...+.
T Consensus 328 ~S~Lvc~isge~md~~-N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~l 383 (389)
T KOG0396|consen 328 QSRLVCSISGELMDDD-NPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSEL 383 (389)
T ss_pred hhHHHhhccccccCCC-CCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHHH
Confidence 4567899999999764 2333479999999999999974 469999998876543
No 247
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=26.51 E-value=29 Score=33.76 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=29.8
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHH
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHAL 151 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~L 151 (371)
=..|.|+.+|...||.+..--+.|+++.|..+|
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~l 221 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKL 221 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHh
Confidence 357999999999999999999999999888775
No 248
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.38 E-value=69 Score=25.79 Aligned_cols=47 Identities=11% Similarity=0.132 Sum_probs=35.5
Q ss_pred cCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCC
Q 017480 191 CPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEM 237 (371)
Q Consensus 191 CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~ 237 (371)
|-.+...+-+.+.-..|-+=-|.|+..+....-...||+||..+-..
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~g~CPnCGGelv~R 54 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRLHGLCPNCGGELVAR 54 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhhcCcCCCCCchhhcC
Confidence 55566666655555556666788999999988888999999988643
No 249
>PHA02929 N1R/p28-like protein; Provisional
Probab=26.01 E-value=1.2e+02 Score=29.43 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=26.6
Q ss_pred CccccCCCCCCCCCe-------eeCCCCceecHHHHHHHH
Q 017480 119 WCNCALSNEPLREPC-------VIDKLGTIFNKEALVHAL 151 (371)
Q Consensus 119 w~~CaLS~~PL~~PI-------V~~~lG~LYnKeaILe~L 151 (371)
=..|++.++++.+|- |...-|+.|..+.|.+||
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl 213 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWK 213 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcccHHHHHHHH
Confidence 367999999987642 344669999999999997
No 250
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=26.01 E-value=1.4e+02 Score=23.11 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC--CCCceEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ--SLSSLYFT 49 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi--~~~~q~Li 49 (371)
+.||...........+|-|+.++|+.+|=..+..+ ++ .+.++.|+
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 55666555533235577778889999999999988 87 66677774
No 251
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=25.88 E-value=32 Score=35.42 Aligned_cols=35 Identities=23% Similarity=0.544 Sum_probs=24.4
Q ss_pred CceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480 200 GKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 200 g~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~ 236 (371)
|+++.-+-+.||-++....-.+. ...|| ||++.+.
T Consensus 236 GKYh~~~c~~C~~~~~~~~~~~~-~~~Cp-CG~~i~~ 270 (374)
T TIGR00375 236 GKYHQTACEACGEPAVSEDAETA-CANCP-CGGRIKK 270 (374)
T ss_pred CccchhhhcccCCcCCchhhhhc-CCCCC-CCCccee
Confidence 45555556678888876655544 67899 9998653
No 252
>COG1773 Rubredoxin [Energy production and conversion]
Probab=25.71 E-value=31 Score=26.11 Aligned_cols=49 Identities=16% Similarity=0.405 Sum_probs=25.0
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-cCCCCCCCCCcCCCceEEe
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-~~~CpvCg~~f~~~DiI~L 242 (371)
.|.|.+++..+....- .+=..+-....++++. +..||+||. .+++...|
T Consensus 3 ~~~C~~CG~vYd~e~G----dp~~gi~pgT~fedlPd~w~CP~Cg~--~K~~F~~~ 52 (55)
T COG1773 3 RWRCSVCGYVYDPEKG----DPRCGIAPGTPFEDLPDDWVCPECGV--GKKDFEMI 52 (55)
T ss_pred ceEecCCceEeccccC----CccCCCCCCCchhhCCCccCCCCCCC--CHhHeeec
Confidence 4667766655532110 0111122334466665 579999986 44444443
No 253
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=25.44 E-value=3.2e+02 Score=21.17 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=31.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CCC--CCceEEE--e----CCeeCCCCC
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQS--LSSLYFT--L----NGKILDEST 59 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi~--~~~q~Li--~----~Gk~L~D~~ 59 (371)
..+|.|+.++|..+|=..+..+ ++. +.++.|+ + ..+.|+|+.
T Consensus 14 ~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e 64 (87)
T cd01768 14 YKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDE 64 (87)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCC
Confidence 5688999999999999999999 865 6666664 2 345666554
No 254
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=25.16 E-value=1.5e+02 Score=22.81 Aligned_cols=35 Identities=9% Similarity=0.070 Sum_probs=29.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG 52 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G 52 (371)
++.+.+....|..+|..+|..+ +++...+.|-|..
T Consensus 12 ~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 12 TRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 5567777788999999999999 8877788888873
No 255
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=25.09 E-value=78 Score=28.56 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=20.4
Q ss_pred EEeccCccc-----cHHHHHHhh---cCCCCCCCCC
Q 017480 206 AMRTCGHVL-----STKALKEVK---SSSCLVCHEE 233 (371)
Q Consensus 206 ~L~~CG~V~-----Se~alkevk---~~~CpvCg~~ 233 (371)
+.-.|||+| |..+++... --.||+||..
T Consensus 6 L~C~~gH~FEgWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 6 LRCENGHEFEGWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred EecCCCCccceecCCHHHHHHHHHcCCccCCCCCCC
Confidence 344578888 777777765 3589999974
No 256
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=24.87 E-value=28 Score=32.84 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=9.5
Q ss_pred cCCCCCCCCCcCC
Q 017480 224 SSSCLVCHEEFGE 236 (371)
Q Consensus 224 ~~~CpvCg~~f~~ 236 (371)
...||+|++.|+.
T Consensus 5 ~~~CPvC~~~F~~ 17 (214)
T PF09986_consen 5 KITCPVCGKEFKT 17 (214)
T ss_pred ceECCCCCCeeee
Confidence 3568888888873
No 257
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.87 E-value=30 Score=38.11 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=38.2
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCceEEecCChH
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEE 247 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~DiI~Lnp~~e 247 (371)
..|||+.-+|-.....=+.-.|||+++..|+..+-...|| | +|+ +|.++-++.++
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~scp-~--~~D-e~~~~~~~~e~ 66 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNASCP-T--KRD-EDSSLMQLKEE 66 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhccCC-C--Ccc-ccchhcChhhc
Confidence 4788886665443333334479999999999999888999 3 554 45666666543
No 258
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=24.77 E-value=62 Score=24.89 Aligned_cols=33 Identities=24% Similarity=0.535 Sum_probs=22.6
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCH 231 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg 231 (371)
...|.||-+|.+ .||- ++++-++.....||.||
T Consensus 23 ~~~F~CPnCG~~--------~I~R-----C~~CRk~~~~Y~CP~CG 55 (59)
T PRK14890 23 AVKFLCPNCGEV--------IIYR-----CEKCRKQSNPYTCPKCG 55 (59)
T ss_pred cCEeeCCCCCCe--------eEee-----chhHHhcCCceECCCCC
Confidence 456777776653 1233 46777777888999998
No 259
>PHA00732 hypothetical protein
Probab=24.54 E-value=62 Score=25.95 Aligned_cols=39 Identities=23% Similarity=0.580 Sum_probs=21.9
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~ 236 (371)
+|.|+.+++.|+....+.--..-.| ....|+.||+.|..
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H----------~~~~C~~CgKsF~~ 39 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNH----------TLTKCPVCNKSYRR 39 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhccc----------CCCccCCCCCEeCC
Confidence 3679999888865221110000001 02379999999973
No 260
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=24.37 E-value=31 Score=29.46 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=16.0
Q ss_pred ccCccccHHHHHHhhcCCCCCCCCC
Q 017480 209 TCGHVLSTKALKEVKSSSCLVCHEE 233 (371)
Q Consensus 209 ~CG~V~Se~alkevk~~~CpvCg~~ 233 (371)
.||+||+.- .+.--.-||.||-.
T Consensus 7 rCG~vf~~g--~~~il~GCp~CG~n 29 (112)
T COG3364 7 RCGEVFDDG--SEEILSGCPKCGCN 29 (112)
T ss_pred ccccccccc--cHHHHccCccccch
Confidence 599999765 23333469999964
No 261
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=24.09 E-value=27 Score=22.23 Aligned_cols=10 Identities=40% Similarity=0.889 Sum_probs=7.8
Q ss_pred CCCCCCCCcC
Q 017480 226 SCLVCHEEFG 235 (371)
Q Consensus 226 ~CpvCg~~f~ 235 (371)
.||+|++.+.
T Consensus 3 ~CPiC~~~v~ 12 (26)
T smart00734 3 QCPVCFREVP 12 (26)
T ss_pred cCCCCcCccc
Confidence 5889988774
No 262
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=24.05 E-value=15 Score=26.12 Aligned_cols=12 Identities=17% Similarity=0.326 Sum_probs=9.2
Q ss_pred cCCCCCCCCCcC
Q 017480 224 SSSCLVCHEEFG 235 (371)
Q Consensus 224 ~~~CpvCg~~f~ 235 (371)
...||.||.++.
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 457999998764
No 263
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.78 E-value=36 Score=29.15 Aligned_cols=13 Identities=46% Similarity=0.846 Sum_probs=11.3
Q ss_pred cCCCCCCCCCcCC
Q 017480 224 SSSCLVCHEEFGE 236 (371)
Q Consensus 224 ~~~CpvCg~~f~~ 236 (371)
...||.||.+|+.
T Consensus 49 ~t~CP~Cg~~~e~ 61 (115)
T COG1885 49 STSCPKCGEPFES 61 (115)
T ss_pred cccCCCCCCccce
Confidence 5689999999985
No 264
>PLN02436 cellulose synthase A
Probab=23.70 E-value=55 Score=38.11 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=39.1
Q ss_pred ceeEcCCcccccC---CceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcC
Q 017480 187 IRFQCPITGLEFN---GKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFG 235 (371)
Q Consensus 187 ~~~~CPVT~~e~n---g~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~ 235 (371)
+.-+|.|||.+.+ +.--||+---||-=+|..|++--. +..||.|...|+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999999863 234799999999889999996443 568999999998
No 265
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.67 E-value=45 Score=37.92 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=23.9
Q ss_pred EcCCcccccCCceeEEEEeccCccccHHHHHHh
Q 017480 190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV 222 (371)
Q Consensus 190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev 222 (371)
.|-+|+..+-++ -.|+.||||-|-..|+.+.
T Consensus 819 ~C~~C~~~ll~~--pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 819 SCDHCGRPLLIK--PFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred chHHhcchhhcC--cceeeeccchHHHHHHHHH
Confidence 588888777554 4566799999999998864
No 266
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.65 E-value=81 Score=31.51 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=30.6
Q ss_pred ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC
Q 017480 120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k 154 (371)
.-|.|.+++-+.| -+.+-|+||.=..|++|+-++
T Consensus 240 ~kC~LCLe~~~~p-SaTpCGHiFCWsCI~~w~~ek 273 (293)
T KOG0317|consen 240 RKCSLCLENRSNP-SATPCGHIFCWSCILEWCSEK 273 (293)
T ss_pred CceEEEecCCCCC-CcCcCcchHHHHHHHHHHccc
Confidence 4699999999999 678999999999999998664
No 267
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=23.49 E-value=49 Score=34.08 Aligned_cols=53 Identities=26% Similarity=0.510 Sum_probs=39.3
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhc--CCCCCCCCCcCCCceEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS--SSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~--~~CpvCg~~f~~~DiI~ 241 (371)
+..+.||++...+-.-+.- ..|||.|+..++.+... ..||+|-..-.....++
T Consensus 19 ~~~l~C~~C~~vl~~p~~~---~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT---TTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCCC---CCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 4458899999988664432 58999999999998754 48999977665544443
No 268
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=23.24 E-value=37 Score=21.74 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=6.2
Q ss_pred CCCCCCCCCcC
Q 017480 225 SSCLVCHEEFG 235 (371)
Q Consensus 225 ~~CpvCg~~f~ 235 (371)
..||.||-.|.
T Consensus 15 ~~Cp~CG~~F~ 25 (26)
T PF10571_consen 15 KFCPHCGYDFE 25 (26)
T ss_pred CcCCCCCCCCc
Confidence 34666665553
No 269
>PRK02224 chromosome segregation protein; Provisional
Probab=22.92 E-value=94 Score=34.83 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=13.6
Q ss_pred cCCCCCCCCCcCCCce
Q 017480 224 SSSCLVCHEEFGEMDK 239 (371)
Q Consensus 224 ~~~CpvCg~~f~~~Di 239 (371)
...||+||.+|...++
T Consensus 451 ~~~Cp~C~r~~~~~~~ 466 (880)
T PRK02224 451 AGKCPECGQPVEGSPH 466 (880)
T ss_pred cccCCCCCCcCCCcch
Confidence 4689999999988765
No 270
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=22.61 E-value=52 Score=33.82 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=32.6
Q ss_pred CCceeeeeeecCCCC--------C------CCCCceeEcCCcccc----cC--CceeEEEEeccCccccHHHH
Q 017480 167 KDLINVKLSRVPGAE--------E------NGDGIRFQCPITGLE----FN--GKYRFVAMRTCGHVLSTKAL 219 (371)
Q Consensus 167 KDlv~Lklt~n~~~~--------~------~~~~~~~~CPVT~~e----~n--g~~rfV~L~~CG~V~Se~al 219 (371)
+||.+-|+..++... + +.....|+|-==... |+ .-+.-+=+|+||||+.|=-+
T Consensus 149 RDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~ 221 (364)
T KOG0658|consen 149 RDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLK 221 (364)
T ss_pred CCCChheEEEcCCCCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhc
Confidence 899999999887532 1 112356888432211 21 12345779999999987443
No 271
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=22.57 E-value=32 Score=28.62 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=13.0
Q ss_pred hcccCCccccCCCCCCCCC
Q 017480 114 QRLSKWCNCALSNEPLREP 132 (371)
Q Consensus 114 ~~~~~w~~CaLS~~PL~~P 132 (371)
..-+.|..|+||..|+..|
T Consensus 35 ~~GH~w~RC~lT~l~i~~~ 53 (99)
T PF12660_consen 35 ENGHVWPRCALTFLPIQTP 53 (99)
T ss_dssp TTS-EEEB-SSS-SBS-SS
T ss_pred CCCCEEeeeeeeeeeeccC
Confidence 4457899999999999988
No 272
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=22.57 E-value=30 Score=21.68 Aligned_cols=12 Identities=25% Similarity=0.841 Sum_probs=9.3
Q ss_pred CCCCCCCCCcCC
Q 017480 225 SSCLVCHEEFGE 236 (371)
Q Consensus 225 ~~CpvCg~~f~~ 236 (371)
..||.||..|..
T Consensus 3 ~~C~~CgR~F~~ 14 (25)
T PF13913_consen 3 VPCPICGRKFNP 14 (25)
T ss_pred CcCCCCCCEECH
Confidence 368999998854
No 273
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=22.41 E-value=73 Score=31.62 Aligned_cols=28 Identities=29% Similarity=0.591 Sum_probs=16.1
Q ss_pred ccCccccHHHHHH---h----------hcCCCCCCCCCcCC
Q 017480 209 TCGHVLSTKALKE---V----------KSSSCLVCHEEFGE 236 (371)
Q Consensus 209 ~CG~V~Se~alke---v----------k~~~CpvCg~~f~~ 236 (371)
+|=|.|+-+++-. + +...|+.|++.|.+
T Consensus 187 ~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 187 PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred CcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 4556666666552 1 23567777777743
No 274
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=22.07 E-value=32 Score=23.98 Aligned_cols=30 Identities=23% Similarity=0.447 Sum_probs=12.1
Q ss_pred eEcCCccccc---CCceeEEEEeccCccccHHH
Q 017480 189 FQCPITGLEF---NGKYRFVAMRTCGHVLSTKA 218 (371)
Q Consensus 189 ~~CPVT~~e~---ng~~rfV~L~~CG~V~Se~a 218 (371)
|.||.++... ....-.++=..||.|+.+..
T Consensus 1 m~Cp~Cg~~~~~~D~~~g~~vC~~CG~Vl~e~~ 33 (43)
T PF08271_consen 1 MKCPNCGSKEIVFDPERGELVCPNCGLVLEENI 33 (43)
T ss_dssp ESBTTTSSSEEEEETTTTEEEETTT-BBEE-TT
T ss_pred CCCcCCcCCceEEcCCCCeEECCCCCCEeeccc
Confidence 4677765431 11111223334666655543
No 275
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=21.91 E-value=62 Score=26.76 Aligned_cols=17 Identities=59% Similarity=0.985 Sum_probs=14.4
Q ss_pred CCceeEcCCcccccCCc
Q 017480 185 DGIRFQCPITGLEFNGK 201 (371)
Q Consensus 185 ~~~~~~CPVT~~e~ng~ 201 (371)
.+..|.|+|+.++|+|-
T Consensus 58 ge~VF~CnI~~L~FggD 74 (88)
T PF15092_consen 58 GEIVFQCNITDLEFGGD 74 (88)
T ss_pred CeEEEEeCCceeecCCC
Confidence 36789999999999863
No 276
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=21.86 E-value=46 Score=19.49 Aligned_cols=11 Identities=45% Similarity=1.265 Sum_probs=5.1
Q ss_pred eEcCCcccccC
Q 017480 189 FQCPITGLEFN 199 (371)
Q Consensus 189 ~~CPVT~~e~n 199 (371)
|.||++++.|+
T Consensus 1 y~C~~C~~~f~ 11 (23)
T PF00096_consen 1 YKCPICGKSFS 11 (23)
T ss_dssp EEETTTTEEES
T ss_pred CCCCCCCCccC
Confidence 34555444443
No 277
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=21.83 E-value=3e+02 Score=22.54 Aligned_cols=61 Identities=10% Similarity=0.060 Sum_probs=35.7
Q ss_pred EEEcCCCCCHHHHHHHHhccC--CCC----------CceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 20 TVGANQFETLNHLKRSLLSLD--QSL----------SSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 20 ~l~v~~~~TV~~lK~~i~~~g--i~~----------~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.+++++..||.+|=+.|...- .-. ....+..||+...--.- .++-|+++++|.+...+-||
T Consensus 22 ~~~~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g--~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 22 VLDGEKPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGE--EDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred eccCCCCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCC--cccCCCCcCEEEEECCCCCC
Confidence 345545679999877776541 100 12234456655431111 25678999999988877765
No 278
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=21.42 E-value=95 Score=25.47 Aligned_cols=47 Identities=11% Similarity=0.249 Sum_probs=34.2
Q ss_pred EcCCcccccCCceeEEEEe-ccCccccHHHHHHhh--cCCCCCCCCCcCC
Q 017480 190 QCPITGLEFNGKYRFVAMR-TCGHVLSTKALKEVK--SSSCLVCHEEFGE 236 (371)
Q Consensus 190 ~CPVT~~e~ng~~rfV~L~-~CG~V~Se~alkevk--~~~CpvCg~~f~~ 236 (371)
.||-+.-.|.......+.| .|-|.|-.-++...- ...||.+.++|.-
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 4666666555444455555 599999999998863 4689999998853
No 280
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.00 E-value=45 Score=32.84 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=32.9
Q ss_pred ccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 116 LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 116 ~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
.-.+-+|.||.+-+++| |..+.|.=|.+..|.|+|-.
T Consensus 208 vpd~lcgkIt~el~~~p-vi~psgIty~ra~I~Ehl~r 244 (284)
T KOG4642|consen 208 VPDYLCGKITLELMREP-VITPSGITYDRADIEEHLQR 244 (284)
T ss_pred ccchhhhhhhHHhhcCC-ccCccccchhHHHHHHHHHH
Confidence 35688999999999999 66799999999999999864
No 281
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=20.90 E-value=79 Score=23.88 Aligned_cols=45 Identities=22% Similarity=0.586 Sum_probs=35.9
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCC--CCCCcC
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLV--CHEEFG 235 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~Cpv--Cg~~f~ 235 (371)
-.||++++.|...--+|+=-.||-++-..+..... .|.. |+.+|.
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~g--~C~~~~c~~~~~ 52 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKAG--GCINYSCGTGFE 52 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhhCC--ceEeccCCCCcc
Confidence 47999999997777788888899999999988754 4655 777764
No 282
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=20.89 E-value=1.5e+02 Score=23.65 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=29.3
Q ss_pred EEEcCC-CCCHHHHHHHHhcc-CC--CCCceEEEeCCee---CCCCCCcccCCCCCCCCeEEEEeee
Q 017480 20 TVGANQ-FETLNHLKRSLLSL-DQ--SLSSLYFTLNGKI---LDESTPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 20 ~l~v~~-~~TV~~lK~~i~~~-gi--~~~~q~Li~~Gk~---L~D~~tL~~~~~I~~~sTL~L~lrL 79 (371)
+|..++ ..+|.+||..|... ++ ..+-.-.+|+... -.|+..+ |+.+++| ++-|+
T Consensus 13 ~i~fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na~t~eeY~dd~~~-----IprnssV-ivrRv 73 (74)
T PF08783_consen 13 TITFDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNAQTGEEYKDDNEL-----IPRNSSV-IVRRV 73 (74)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHT---TTTEEEEEEESSS--EE-STT-E-----EETT--E-EEEEE
T ss_pred EEEECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECCCCCCccCCCCeE-----EeCCCEE-EEEeC
Confidence 455554 58999999999777 54 3343333555443 3344444 7777766 34443
No 283
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=20.82 E-value=96 Score=21.25 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=27.5
Q ss_pred cccCCCCCCC--CCeeeCCCCceecHHHHHHHHHcC
Q 017480 121 NCALSNEPLR--EPCVIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 121 ~CaLS~~PL~--~PIV~~~lG~LYnKeaILe~LL~k 154 (371)
.|++.++++. +.++...=|+.|-.+-|.+||...
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~ 37 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN 37 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC
Confidence 5888888884 455666689999999999999653
No 284
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=20.80 E-value=1.1e+02 Score=25.85 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=24.7
Q ss_pred EEEeCCeeCCCCCCcccCCCCCCCC--eEEEEeeecCCC
Q 017480 47 YFTLNGKILDESTPLFKNPQIAPLS--TLYLRQRVFGGG 83 (371)
Q Consensus 47 ~Li~~Gk~L~D~~tL~~~~~I~~~s--TL~L~lrL~G~~ 83 (371)
.|-|+|++|..+.+| .+| |..+. .|.+-|.-+|.|
T Consensus 3 ~LW~aGK~l~~~k~l-~dy-~GkNEKtKiivKl~~~g~g 39 (98)
T PF11069_consen 3 QLWWAGKELQRGKKL-SDY-IGKNEKTKIIVKLQKRGQG 39 (98)
T ss_pred eEEeccccccCCCcH-HHh-cCCCcceeEEEEeccCCCC
Confidence 477999999999999 888 55444 355555555554
No 285
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=20.76 E-value=28 Score=35.32 Aligned_cols=52 Identities=23% Similarity=0.577 Sum_probs=29.3
Q ss_pred CceeEcCCcc--cccCCceeEEEEeccCcc---c----cHHHHHHh----hcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITG--LEFNGKYRFVAMRTCGHV---L----STKALKEV----KSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~--~e~ng~~rfV~L~~CG~V---~----Se~alkev----k~~~CpvCg~~f~~~ 237 (371)
..+|-|||-+ +...+..-.-|-+-=||- + +..-...+ +...|++|++.|+.-
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNl 411 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNL 411 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccC
Confidence 3689999955 333333334444445551 1 12222222 456899999999864
No 286
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=20.64 E-value=2.7e+02 Score=21.10 Aligned_cols=34 Identities=6% Similarity=-0.001 Sum_probs=25.4
Q ss_pred EEEEcC-CCCCHHHHHHHHhcc-CCCCCceEEEeCC
Q 017480 19 LTVGAN-QFETLNHLKRSLLSL-DQSLSSLYFTLNG 52 (371)
Q Consensus 19 ~~l~v~-~~~TV~~lK~~i~~~-gi~~~~q~Li~~G 52 (371)
..+.+. ...|..+|+++|..+ +++...+.|.|-.
T Consensus 12 ~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 12 RRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred EEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 344444 678999999999999 8766677776654
No 287
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=20.55 E-value=97 Score=21.98 Aligned_cols=30 Identities=27% Similarity=0.559 Sum_probs=18.8
Q ss_pred ccCCCCCCCC----CeeeCCCCceecHHHHHHHHHc
Q 017480 122 CALSNEPLRE----PCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 122 CaLS~~PL~~----PIV~~~lG~LYnKeaILe~LL~ 153 (371)
|.++.+ +.. |+|.- =|+.|.+++|-..+-.
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhc
Confidence 677777 666 88774 8999999999887764
No 288
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.49 E-value=89 Score=27.42 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=9.8
Q ss_pred CceeEcCCcccccC
Q 017480 186 GIRFQCPITGLEFN 199 (371)
Q Consensus 186 ~~~~~CPVT~~e~n 199 (371)
...|.|+.|+..+.
T Consensus 68 p~~~~C~~CG~~~~ 81 (135)
T PRK03824 68 EAVLKCRNCGNEWS 81 (135)
T ss_pred ceEEECCCCCCEEe
Confidence 35788888776654
No 289
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=20.47 E-value=2.1e+02 Score=23.14 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=38.6
Q ss_pred EEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe--CCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 8 FIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL--NGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 8 FVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~--~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
-|++.+.. .-+-|-+ .++.+|+.+...+ +++.+..+|++ .|..++|+.-+ -.++++ |.-|.|
T Consensus 6 kv~~~~r~-~k~Gv~A---~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF---~tLp~n-T~lm~L 70 (78)
T PF02017_consen 6 KVRNHDRS-VKKGVAA---SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYF---QTLPDN-TVLMLL 70 (78)
T ss_dssp EEEETTSS-CEEEEEE---SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHH---CCSSSS-EEEEEE
T ss_pred EEecCCCC-ceEeEEc---CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHH---hhCCCC-CEEEEE
Confidence 45555543 2334444 4899999999999 99877776665 78888876433 234444 454544
No 290
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=20.32 E-value=89 Score=30.51 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=40.3
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCC--CCCCcCCCceEEecCChHHHHHHHHHHHHHHH
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLV--CHEEFGEMDKILINGNEEEISVLRERMEEEKL 261 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~Cpv--Cg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~a 261 (371)
.-.||||.... ..-+.-+.|.|++-..++...- ...||+ |.....-++.+ .+++-.+|++|...|.
T Consensus 189 ~nrCpitl~p~---~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v-----~d~IlE~R~~~~~ir~ 260 (275)
T COG5627 189 SNRCPITLNPD---FYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYV-----CDHILEKREAMKYIRN 260 (275)
T ss_pred cccCCcccCcc---hhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchh-----hhHHHHHHHHHHHHHh
Confidence 45799997642 1223446799999999988763 357776 64443333332 3445556666755443
No 291
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=20.29 E-value=1.1e+02 Score=27.94 Aligned_cols=28 Identities=25% Similarity=0.238 Sum_probs=23.2
Q ss_pred CCceEEecCChHHHHHHHHHHHHHHHhh
Q 017480 236 EMDKILINGNEEEISVLRERMEEEKLKV 263 (371)
Q Consensus 236 ~~DiI~Lnp~~ee~~~l~~rm~~~~ak~ 263 (371)
.+|||+..-+.||++.+..|||+....+
T Consensus 30 iDdIv~~lve~Ee~e~iA~rMEelae~k 57 (182)
T COG4739 30 IDDIVIVLVEGEEMEKIAARMEELAEEK 57 (182)
T ss_pred ccceEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 5788888888899999999999876544
No 292
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=20.08 E-value=81 Score=26.29 Aligned_cols=25 Identities=24% Similarity=0.520 Sum_probs=17.3
Q ss_pred CceeEcCCcccccCCceeEEEEeccC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCG 211 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG 211 (371)
...|.||.+++. .=+-..+.||.|.
T Consensus 33 ~a~y~CpfCgk~-~vkR~a~GIW~C~ 57 (91)
T TIGR00280 33 KAKYVCPFCGKK-TVKRGSTGIWTCR 57 (91)
T ss_pred hcCccCCCCCCC-ceEEEeeEEEEcC
Confidence 567999999864 2244678888543
Done!