Query 017480
Match_columns 371
No_of_seqs 295 out of 706
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3phx_B Ubiquitin-like protein 99.9 1.4E-21 4.9E-26 152.3 9.7 78 1-81 1-79 (79)
2 3n3k_B Ubiquitin; hydrolase, p 99.8 1.5E-21 5.3E-26 153.2 8.7 82 3-87 2-84 (85)
3 3mtn_B UBA80, ubcep1, ubiquiti 99.8 4.7E-21 1.6E-25 150.2 9.2 82 3-87 2-84 (85)
4 4fbj_B NEDD8; effector-HOST ta 99.8 4.6E-21 1.6E-25 153.6 9.2 82 5-89 1-83 (88)
5 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 2.8E-20 9.7E-25 147.2 8.6 81 3-86 6-87 (87)
6 1sif_A Ubiquitin; hydrophobic 99.8 6E-20 2E-24 147.1 8.8 79 4-85 9-88 (88)
7 2hj8_A Interferon-induced 17 k 99.8 3.4E-20 1.2E-24 148.4 6.6 82 1-85 1-83 (88)
8 3dbh_I NEDD8; cell cycle, acti 99.8 1.1E-19 3.6E-24 143.8 8.3 77 3-82 11-88 (88)
9 1ndd_A NEDD8, protein (ubiquit 99.8 1.8E-19 6.3E-24 137.8 9.3 75 5-82 1-76 (76)
10 2kan_A Uncharacterized protein 99.8 1.2E-19 4E-24 147.7 8.6 79 3-85 14-94 (94)
11 2uyz_B Small ubiquitin-related 99.8 9.3E-20 3.2E-24 142.0 7.0 77 3-82 2-79 (79)
12 4hcn_B Polyubiquitin, ubiquiti 99.8 3.8E-19 1.3E-23 145.1 8.9 77 3-82 21-98 (98)
13 3rt3_B Ubiquitin-like protein 99.8 4.7E-19 1.6E-23 155.2 9.7 79 2-83 79-158 (159)
14 1wy8_A NP95-like ring finger p 99.8 5.7E-19 1.9E-23 140.5 9.2 82 3-86 6-89 (89)
15 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 6.1E-19 2.1E-23 142.2 9.4 78 4-84 1-79 (96)
16 3a9j_A Ubiquitin; protein comp 99.8 7.6E-19 2.6E-23 134.4 9.4 75 5-82 1-76 (76)
17 1wyw_B Ubiquitin-like protein 99.8 2.8E-19 9.7E-24 145.8 7.4 77 3-82 20-97 (97)
18 2l7r_A Ubiquitin-like protein 99.8 5.4E-19 1.8E-23 143.1 7.6 76 2-82 17-93 (93)
19 1we6_A Splicing factor, putati 99.8 9.2E-19 3.2E-23 146.0 9.3 81 3-86 26-111 (111)
20 3l0w_B Monoubiquitinated proli 99.8 1.2E-18 4E-23 156.2 9.9 80 5-87 1-81 (169)
21 1wgd_A Homocysteine-responsive 99.8 1.2E-18 4.2E-23 140.4 8.6 83 3-86 6-93 (93)
22 3plu_A Ubiquitin-like modifier 99.8 1.3E-18 4.3E-23 142.2 8.5 71 3-76 20-91 (93)
23 4dwf_A HLA-B-associated transc 99.8 2E-18 6.9E-23 137.7 8.6 81 3-87 4-85 (90)
24 3vdz_A Ubiquitin-40S ribosomal 99.7 3.2E-18 1.1E-22 143.1 9.9 76 4-82 35-111 (111)
25 3v6c_B Ubiquitin; structural g 99.7 3E-18 1E-22 137.5 9.2 75 3-80 16-91 (91)
26 2fnj_B Transcription elongatio 99.7 1.1E-18 3.9E-23 148.3 6.3 77 5-84 1-85 (118)
27 2lxa_A Ubiquitin-like protein 99.7 1.9E-18 6.5E-23 139.3 7.1 73 5-78 2-77 (87)
28 3b1l_X E3 ubiquitin-protein li 99.6 1.3E-19 4.5E-24 139.7 0.0 74 5-81 1-75 (76)
29 1yx5_B Ubiquitin; proteasome, 99.7 5.3E-18 1.8E-22 137.8 9.5 82 5-89 1-83 (98)
30 3u5e_m 60S ribosomal protein L 99.7 1.6E-19 5.5E-24 154.4 -0.4 80 5-87 1-81 (128)
31 2faz_A Ubiquitin-like containi 99.7 9.2E-18 3.1E-22 130.1 9.4 73 4-79 2-77 (78)
32 3q3f_A Ribonuclease/ubiquitin 99.7 5.3E-18 1.8E-22 154.9 8.6 80 2-84 103-183 (189)
33 2kk8_A Uncharacterized protein 99.7 6.3E-18 2.1E-22 134.8 7.9 74 2-78 8-83 (84)
34 1uh6_A Ubiquitin-like 5; beta- 99.7 4.3E-18 1.5E-22 140.9 6.7 71 3-76 27-98 (100)
35 1se9_A Ubiquitin family; ubiqu 99.7 1.8E-17 6E-22 142.4 10.0 78 3-83 15-107 (126)
36 2ojr_A Ubiquitin; lanthide-bin 99.7 2.2E-17 7.7E-22 137.7 10.2 77 3-82 34-111 (111)
37 3u5c_f 40S ribosomal protein S 99.7 5.2E-19 1.8E-23 156.4 0.0 76 5-83 1-77 (152)
38 2kdi_A Ubiquitin, vacuolar pro 99.7 3.4E-17 1.2E-21 137.6 10.3 79 2-83 7-86 (114)
39 4a20_A Ubiquitin-like protein 99.7 4.2E-17 1.4E-21 134.2 9.8 75 3-78 18-95 (98)
40 1wgh_A Ubiquitin-like 3, HCG-1 99.7 4.3E-17 1.5E-21 138.2 10.1 77 3-82 15-102 (116)
41 4eew_A Large proline-rich prot 99.7 2.8E-17 9.6E-22 130.5 8.4 72 3-78 16-88 (88)
42 2dzi_A Ubiquitin-like protein 99.7 4.1E-17 1.4E-21 126.8 8.8 75 3-80 6-81 (81)
43 3u30_A Ubiquitin, linear DI-ub 99.7 2.2E-17 7.6E-22 146.8 8.1 78 2-82 94-172 (172)
44 2xzm_9 RPS31E; ribosome, trans 99.7 1.5E-18 5E-23 158.5 0.5 73 5-85 1-74 (189)
45 1wx8_A Riken cDNA 4931431F19; 99.7 1.2E-17 4.2E-22 135.0 5.8 80 3-86 16-96 (96)
46 2gow_A HCG-1 protein, ubiquiti 99.7 3.8E-17 1.3E-21 140.2 9.1 79 4-85 17-106 (125)
47 1wju_A NEDD8 ultimate buster-1 99.7 3E-17 1E-21 135.8 6.8 81 4-86 17-98 (100)
48 4ajy_B Transcription elongatio 99.7 4.4E-17 1.5E-21 138.4 7.7 73 5-79 1-81 (118)
49 3m62_B UV excision repair prot 99.7 9.4E-17 3.2E-21 133.1 8.7 73 5-80 2-75 (106)
50 1v2y_A 3300001G02RIK protein; 99.7 2.1E-17 7.3E-22 137.8 4.7 76 4-82 7-99 (105)
51 1we7_A SF3A1 protein; structur 99.7 9.7E-17 3.3E-21 134.6 8.2 81 3-86 24-115 (115)
52 2wyq_A HHR23A, UV excision rep 99.7 3.1E-16 1E-20 123.2 9.7 74 3-79 4-81 (85)
53 1yqb_A Ubiquilin 3; structural 99.7 1.4E-16 4.7E-21 130.9 7.9 78 3-84 21-99 (100)
54 2bwf_A Ubiquitin-like protein 99.7 1.9E-16 6.4E-21 121.9 8.2 70 5-78 5-75 (77)
55 3u30_A Ubiquitin, linear DI-ub 99.7 1.9E-16 6.4E-21 140.8 9.3 77 3-82 19-96 (172)
56 1j8c_A Ubiquitin-like protein 99.7 2.4E-16 8.3E-21 134.7 9.5 78 3-84 31-109 (125)
57 1v5o_A 1700011N24RIK protein; 99.7 9.6E-17 3.3E-21 131.9 6.7 85 2-87 5-93 (102)
58 3b08_A Polyubiquitin-C, ubiqui 99.7 2.6E-16 9.1E-21 135.3 9.7 78 2-82 74-152 (152)
59 1uel_A HHR23B, UV excision rep 99.7 4.8E-16 1.7E-20 125.9 10.5 79 5-86 1-83 (95)
60 1wx7_A Ubiquilin 3; ubiquitin- 99.6 3E-16 1E-20 129.6 8.5 79 3-85 16-95 (106)
61 1ttn_A DC-UBP, dendritic cell- 99.6 2.6E-16 8.7E-21 130.3 8.0 76 4-82 23-99 (106)
62 2kdb_A Homocysteine-responsive 99.6 2.2E-16 7.6E-21 130.1 6.5 73 3-76 22-99 (99)
63 3rt3_B Ubiquitin-like protein 99.6 9E-16 3.1E-20 134.2 9.3 74 5-81 3-80 (159)
64 2klc_A Ubiquilin-1; ubiquitin- 99.6 1.4E-15 4.7E-20 125.0 9.5 75 3-81 24-99 (101)
65 3b08_A Polyubiquitin-C, ubiqui 99.6 4E-15 1.4E-19 127.9 9.5 75 5-82 1-76 (152)
66 4dbg_A Ranbp-type and C3HC4-ty 99.6 4.7E-15 1.6E-19 123.7 9.1 74 4-78 24-99 (105)
67 1wia_A Hypothetical ubiquitin- 99.6 1E-14 3.5E-19 117.7 9.9 77 3-84 6-83 (95)
68 2dzj_A Synaptic glycoprotein S 99.5 8E-15 2.7E-19 118.0 7.6 71 4-75 10-85 (88)
69 3m63_B Ubiquitin domain-contai 99.5 6.7E-15 2.3E-19 121.1 5.3 70 5-78 29-99 (101)
70 3ai5_A Yeast enhanced green fl 99.5 2E-14 6.8E-19 140.0 9.4 76 2-80 231-307 (307)
71 2io1_B Small ubiquitin-related 99.5 3.1E-14 1.1E-18 116.1 9.1 79 3-84 6-85 (94)
72 2dzm_A FAS-associated factor 1 99.5 9.9E-15 3.4E-19 120.6 4.9 74 3-80 7-84 (100)
73 1v5t_A 8430435I17RIK protein; 99.5 2.2E-14 7.4E-19 115.3 6.4 70 3-76 6-80 (90)
74 1wgg_A Ubiquitin carboxyl-term 99.5 2.1E-14 7.3E-19 117.1 5.9 69 3-76 6-76 (96)
75 1wxv_A BAG-family molecular ch 99.5 7.2E-14 2.5E-18 112.0 7.6 73 2-78 5-84 (92)
76 1x1m_A Ubiquitin-like protein 99.5 1.3E-13 4.4E-18 114.2 8.0 75 4-81 12-102 (107)
77 2kd0_A LRR repeats and ubiquit 99.4 1.9E-13 6.6E-18 108.7 7.9 68 7-77 14-82 (85)
78 1oqy_A HHR23A, UV excision rep 99.4 1.7E-13 5.7E-18 136.6 8.2 79 3-84 6-89 (368)
79 2io0_B Small ubiquitin-related 99.4 6.4E-13 2.2E-17 107.8 9.4 78 4-84 5-83 (91)
80 1wf9_A NPL4 family protein; be 99.4 1.8E-13 6.2E-18 113.5 5.7 72 3-78 6-94 (107)
81 1v86_A DNA segment, CHR 7, way 99.4 1.2E-13 4.1E-18 112.2 4.1 70 3-77 16-86 (95)
82 2kjr_A CG11242; UBL, ubiquitin 99.4 4.9E-13 1.7E-17 109.2 7.6 72 4-76 15-93 (95)
83 1wz0_A Ubiquitin-like protein 99.4 1.4E-12 4.6E-17 108.4 8.3 81 3-86 23-104 (104)
84 2d07_B Ubiquitin-like protein 99.3 3.6E-12 1.2E-16 103.6 9.0 77 3-82 16-93 (93)
85 2daf_A FLJ35834 protein; hypot 99.3 3.2E-12 1.1E-16 108.3 8.1 74 3-79 14-89 (118)
86 4b6w_A Tubulin-specific chaper 99.3 5E-12 1.7E-16 101.3 8.2 71 6-77 4-82 (86)
87 2kj6_A Tubulin folding cofacto 99.3 2.5E-12 8.7E-17 105.5 6.3 71 5-76 15-93 (97)
88 1t0y_A Tubulin folding cofacto 99.3 1.2E-11 4.2E-16 104.8 8.5 75 1-77 3-85 (122)
89 1v6e_A Cytoskeleton-associated 99.3 1E-11 3.5E-16 100.6 7.4 70 5-76 8-85 (95)
90 2kzr_A Ubiquitin thioesterase 99.2 6.7E-12 2.3E-16 99.8 5.9 68 5-76 1-75 (86)
91 2eke_C Ubiquitin-like protein 99.2 2E-11 7E-16 101.8 8.3 76 3-82 30-106 (106)
92 2k8h_A Small ubiquitin protein 99.2 1.2E-11 4E-16 103.9 5.8 78 4-84 26-104 (110)
93 1wm3_A Ubiquitin-like protein 99.2 8.1E-11 2.8E-15 90.8 8.9 70 4-76 1-71 (72)
94 3a4r_A Nfatc2-interacting prot 99.0 6E-10 2E-14 87.7 8.3 72 3-76 6-78 (79)
95 3shq_A UBLCP1; phosphatase, hy 99.0 2.4E-10 8.1E-15 111.9 6.1 70 3-76 4-77 (320)
96 3pge_A SUMO-modified prolifera 98.9 4.8E-09 1.6E-13 96.5 9.6 79 4-86 29-108 (200)
97 3kyd_D Small ubiquitin-related 98.7 8.5E-08 2.9E-12 81.0 9.2 75 4-81 40-115 (115)
98 1wjn_A Tubulin-folding protein 98.6 8.7E-08 3E-12 77.5 8.2 70 5-77 10-91 (97)
99 3tix_A Ubiquitin-like protein 98.6 8.2E-08 2.8E-12 87.7 6.7 77 4-84 57-134 (207)
100 3v7o_A Minor nucleoprotein VP3 98.4 3E-08 1E-12 91.7 0.5 76 4-83 21-97 (227)
101 4ap4_A E3 ubiquitin ligase RNF 98.4 2.1E-07 7.2E-12 77.4 5.6 114 120-243 8-132 (133)
102 2pjh_A Protein NPL4, nuclear p 98.4 2E-07 6.9E-12 73.5 4.3 72 1-76 1-78 (80)
103 2bay_A PRE-mRNA splicing facto 98.3 5.8E-07 2E-11 67.3 4.0 56 120-175 4-59 (61)
104 2bay_A PRE-mRNA splicing facto 98.2 8.8E-07 3E-11 66.3 4.3 55 188-245 3-59 (61)
105 1g25_A CDK-activating kinase a 98.1 1.5E-06 5.2E-11 64.5 3.8 56 188-243 3-62 (65)
106 1t1h_A Gspef-atpub14, armadill 98.0 1.4E-05 4.9E-10 61.0 6.6 52 186-241 6-60 (78)
107 2xeu_A Ring finger protein 4; 97.9 7.8E-06 2.7E-10 59.7 3.7 55 188-242 3-62 (64)
108 4efo_A Serine/threonine-protei 97.9 1.7E-05 5.8E-10 64.7 5.5 40 17-56 24-64 (94)
109 2kr4_A Ubiquitin conjugation f 97.8 1.3E-05 4.6E-10 63.3 4.1 52 186-241 12-65 (85)
110 1jm7_A BRCA1, breast cancer ty 97.8 2.2E-05 7.5E-10 63.8 5.0 67 188-258 21-92 (112)
111 1wgm_A Ubiquitin conjugation f 97.8 2.3E-05 7.9E-10 63.7 5.0 51 187-241 21-74 (98)
112 2kre_A Ubiquitin conjugation f 97.7 2.3E-05 7.7E-10 64.0 4.4 64 186-260 27-92 (100)
113 3ng2_A RNF4, snurf, ring finge 97.7 1.3E-05 4.5E-10 59.9 2.5 57 186-242 8-69 (71)
114 3uf8_A Ubiquitin-like protein 97.7 8.7E-05 3E-09 68.1 8.1 76 4-83 21-97 (209)
115 3goe_A DNA repair protein RAD6 97.7 0.00021 7.1E-09 56.4 8.7 71 4-77 9-81 (82)
116 2ect_A Ring finger protein 126 97.7 2.9E-05 9.8E-10 59.4 3.7 59 186-245 13-73 (78)
117 2djb_A Polycomb group ring fin 97.6 4.6E-05 1.6E-09 57.6 4.6 54 186-242 13-68 (72)
118 2ct2_A Tripartite motif protei 97.6 2E-05 6.8E-10 61.2 2.2 56 186-241 13-73 (88)
119 2f42_A STIP1 homology and U-bo 97.6 3.8E-05 1.3E-09 69.4 4.3 53 186-242 104-159 (179)
120 2csy_A Zinc finger protein 183 97.6 7.8E-05 2.7E-09 57.5 5.2 47 185-235 12-60 (81)
121 3ix6_A TS, tsase, thymidylate 97.6 1.1E-05 3.8E-10 80.0 0.0 75 4-82 21-96 (360)
122 2yu4_A E3 SUMO-protein ligase 97.5 6.7E-05 2.3E-09 60.1 4.3 53 186-241 5-68 (94)
123 2ecm_A Ring finger and CHY zin 97.5 6.2E-05 2.1E-09 53.4 3.4 49 187-235 4-54 (55)
124 2ysl_A Tripartite motif-contai 97.5 9E-05 3.1E-09 55.6 4.3 50 186-239 18-72 (73)
125 2y43_A E3 ubiquitin-protein li 97.5 0.00018 6E-09 57.5 6.3 51 188-241 22-74 (99)
126 2ecy_A TNF receptor-associated 97.5 0.00011 3.7E-09 54.5 4.4 50 186-239 13-65 (66)
127 2ckl_B Ubiquitin ligase protei 97.4 8.7E-05 3E-09 64.8 4.3 58 186-246 52-112 (165)
128 3ztg_A E3 ubiquitin-protein li 97.4 0.00019 6.6E-09 56.4 5.8 55 186-244 11-70 (92)
129 1e4u_A Transcriptional repress 97.4 1.5E-05 5.1E-10 62.4 -1.5 63 186-249 9-75 (78)
130 2jxx_A Nfatc2-interacting prot 97.4 0.00044 1.5E-08 56.5 7.2 71 4-76 25-96 (97)
131 2c2l_A CHIP, carboxy terminus 97.3 0.00011 3.9E-09 68.0 4.0 52 186-241 206-260 (281)
132 3lrq_A E3 ubiquitin-protein li 97.3 0.0002 6.9E-09 57.7 5.0 59 187-249 21-82 (100)
133 1x4j_A Ring finger protein 38; 97.3 0.00031 1.1E-08 53.3 5.7 50 186-236 21-72 (75)
134 2ea6_A Ring finger protein 4; 97.3 9.9E-05 3.4E-09 54.5 2.7 51 186-236 13-68 (69)
135 2ecn_A Ring finger protein 141 97.3 6.6E-05 2.3E-09 56.1 1.7 55 186-245 13-69 (70)
136 2d8t_A Dactylidin, ring finger 97.3 0.00016 5.4E-09 54.4 3.4 51 186-240 13-65 (71)
137 2ecw_A Tripartite motif-contai 97.3 0.00026 8.8E-09 54.1 4.6 53 186-242 17-77 (85)
138 4ap4_A E3 ubiquitin ligase RNF 97.3 0.00014 4.7E-09 60.1 3.1 59 187-245 6-69 (133)
139 2ckl_A Polycomb group ring fin 97.2 0.00031 1E-08 57.1 5.0 48 187-237 14-63 (108)
140 2kiz_A E3 ubiquitin-protein li 97.2 0.00043 1.5E-08 51.4 5.2 50 186-236 12-63 (69)
141 3htk_C E3 SUMO-protein ligase 97.2 0.00046 1.6E-08 65.8 6.7 53 186-241 179-237 (267)
142 2ep4_A Ring finger protein 24; 97.2 0.00043 1.5E-08 52.2 4.7 51 186-237 13-65 (74)
143 2ecv_A Tripartite motif-contai 97.1 0.00023 8E-09 54.4 3.0 51 186-240 17-75 (85)
144 2yur_A Retinoblastoma-binding 97.1 0.00025 8.7E-09 53.9 3.1 54 186-243 13-71 (74)
145 2kr4_A Ubiquitin conjugation f 97.1 0.00066 2.3E-08 53.4 5.6 56 115-171 10-65 (85)
146 3fl2_A E3 ubiquitin-protein li 97.0 0.00032 1.1E-08 58.4 3.2 49 187-239 51-102 (124)
147 4da1_A Protein phosphatase 1K, 97.0 0.00011 3.7E-09 72.8 0.0 81 5-89 31-112 (389)
148 2egp_A Tripartite motif-contai 97.0 0.00028 9.7E-09 53.5 2.3 50 186-239 10-68 (79)
149 2al3_A TUG long isoform; TUG U 97.0 0.0015 5.2E-08 52.7 6.5 72 4-78 9-81 (90)
150 1iym_A EL5; ring-H2 finger, ub 96.9 0.00043 1.5E-08 49.1 2.8 48 188-235 5-54 (55)
151 3hct_A TNF receptor-associated 96.9 0.00042 1.4E-08 57.3 2.7 52 186-241 16-70 (118)
152 1jm7_B BARD1, BRCA1-associated 96.9 0.00024 8.3E-09 58.7 1.1 49 188-239 22-70 (117)
153 4ayc_A E3 ubiquitin-protein li 96.8 0.00083 2.8E-08 57.1 4.3 46 188-237 53-100 (138)
154 2l0b_A E3 ubiquitin-protein li 96.7 0.0015 5E-08 51.7 4.7 50 186-236 38-89 (91)
155 2y1n_A E3 ubiquitin-protein li 96.7 0.00073 2.5E-08 67.7 3.5 53 189-245 333-388 (389)
156 1chc_A Equine herpes virus-1 r 96.7 0.0013 4.3E-08 48.6 4.0 46 188-236 5-52 (68)
157 1v87_A Deltex protein 2; ring- 96.7 0.0012 4.3E-08 53.7 4.2 49 189-237 26-95 (114)
158 2kre_A Ubiquitin conjugation f 96.7 0.0021 7.3E-08 52.2 5.6 56 116-172 26-81 (100)
159 1z6u_A NP95-like ring finger p 96.7 0.0011 3.8E-08 57.6 4.0 52 188-243 78-132 (150)
160 1rmd_A RAG1; V(D)J recombinati 96.6 0.00071 2.4E-08 55.5 2.1 52 187-242 22-76 (116)
161 1wgm_A Ubiquitin conjugation f 96.6 0.0028 9.5E-08 51.3 5.6 55 117-172 20-75 (98)
162 1ryj_A Unknown; beta/alpha pro 96.6 0.014 4.9E-07 44.1 9.2 70 1-82 1-70 (70)
163 2ecj_A Tripartite motif-contai 96.5 0.0014 4.7E-08 46.7 2.9 41 186-230 13-58 (58)
164 2kc2_A Talin-1, F1; FERM, adhe 96.5 0.0021 7.2E-08 55.0 4.1 69 6-77 13-121 (128)
165 2ysj_A Tripartite motif-contai 96.4 0.0017 5.9E-08 47.3 2.8 41 186-230 18-63 (63)
166 2ecl_A Ring-box protein 2; RNF 96.4 0.0015 5.1E-08 50.7 2.5 49 190-238 17-78 (81)
167 1wim_A KIAA0161 protein; ring 96.3 0.0017 5.7E-08 51.5 2.6 53 186-239 3-69 (94)
168 2vje_B MDM4 protein; proto-onc 96.3 0.0033 1.1E-07 46.6 3.9 53 186-242 5-60 (63)
169 4e71_A Plexin-B2, MM1; transme 96.2 0.0099 3.4E-07 49.7 6.9 74 4-78 11-110 (111)
170 3l11_A E3 ubiquitin-protein li 96.2 0.0014 4.8E-08 53.6 1.6 47 186-236 13-62 (115)
171 2l32_A Small archaeal modifier 96.2 0.019 6.4E-07 44.3 7.7 67 5-84 1-67 (74)
172 2ecg_A Baculoviral IAP repeat- 96.0 0.002 6.8E-08 49.1 1.6 44 188-237 25-69 (75)
173 3hcs_A TNF receptor-associated 96.0 0.0028 9.5E-08 55.4 2.7 52 186-241 16-70 (170)
174 2vje_A E3 ubiquitin-protein li 96.0 0.008 2.7E-07 44.6 4.8 50 188-242 8-61 (64)
175 4ic3_A E3 ubiquitin-protein li 95.9 0.003 1E-07 48.1 2.1 43 188-236 24-67 (74)
176 2yu4_A E3 SUMO-protein ligase 95.8 0.0061 2.1E-07 48.6 3.6 36 119-154 7-42 (94)
177 3qx1_A FAS-associated factor 1 95.7 0.058 2E-06 42.0 9.0 69 5-76 8-81 (84)
178 2f42_A STIP1 homology and U-bo 95.6 0.01 3.4E-07 53.5 4.7 54 117-171 104-158 (179)
179 2l76_A Nfatc2-interacting prot 95.6 0.038 1.3E-06 44.9 7.6 69 5-77 22-91 (95)
180 2ea5_A Cell growth regulator w 95.5 0.0079 2.7E-07 45.3 3.0 50 186-243 13-63 (68)
181 2yho_A E3 ubiquitin-protein li 95.5 0.007 2.4E-07 46.9 2.7 47 189-243 19-66 (79)
182 1bor_A Transcription factor PM 95.4 0.0029 1E-07 45.6 0.3 46 186-236 4-49 (56)
183 3h6n_A Plexin-D1; structural g 94.9 0.12 4.1E-06 44.0 8.8 61 18-79 18-105 (127)
184 2k5p_A THis protein, thiamine- 94.8 0.026 8.9E-07 43.9 4.2 68 5-85 1-71 (78)
185 3knv_A TNF receptor-associated 94.3 0.0057 1.9E-07 52.5 -0.8 46 186-235 29-77 (141)
186 3vk6_A E3 ubiquitin-protein li 94.1 0.037 1.3E-06 45.4 3.7 49 190-241 3-54 (101)
187 4e74_A Plexin-A4; RBD, structu 93.8 0.1 3.5E-06 43.9 5.9 74 4-78 13-114 (117)
188 3dpl_R Ring-box protein 1; ubi 93.7 0.06 2E-06 44.1 4.4 46 190-235 39-100 (106)
189 1tyg_B YJBS; alpha beta barrel 93.7 0.17 5.7E-06 40.3 6.8 67 4-82 20-87 (87)
190 2kl0_A Putative thiamin biosyn 93.5 0.095 3.3E-06 40.1 4.9 66 5-83 1-66 (73)
191 3t6p_A Baculoviral IAP repeat- 93.5 0.026 9E-07 55.5 2.1 43 188-236 295-338 (345)
192 2c2l_A CHIP, carboxy terminus 93.5 0.058 2E-06 49.6 4.3 37 116-153 205-241 (281)
193 2r2o_A Plexin-B1; effector dom 93.1 0.17 5.8E-06 43.7 6.3 75 4-79 24-129 (138)
194 1wj4_A KIAA0794 protein; UBX d 92.6 0.32 1.1E-05 40.9 7.3 69 5-76 44-117 (124)
195 2dzk_A UBX domain-containing p 91.8 0.62 2.1E-05 38.1 8.0 70 5-77 14-89 (109)
196 1f0z_A THis protein; ubiquitin 91.4 0.35 1.2E-05 35.7 5.5 66 5-82 1-66 (66)
197 3rpf_C Molybdopterin convertin 91.2 0.74 2.5E-05 34.6 7.2 71 5-82 1-74 (74)
198 4a0k_B E3 ubiquitin-protein li 90.4 0.05 1.7E-06 45.6 0.0 46 190-235 50-111 (117)
199 2cr5_A Reproduction 8; UBX dom 89.9 0.86 2.9E-05 37.2 7.0 71 4-77 23-97 (109)
200 2juo_A GA-binding protein alph 89.4 1.1 3.7E-05 35.7 6.9 58 20-80 8-66 (89)
201 3jyu_A Ubiquitin carboxyl-term 89.0 1.8 6.3E-05 39.7 9.4 63 17-80 152-222 (231)
202 3i2d_A E3 SUMO-protein ligase 89.0 0.28 9.5E-06 48.7 4.0 157 64-241 136-305 (371)
203 3htk_C E3 SUMO-protein ligase 88.9 0.33 1.1E-05 46.2 4.3 38 115-152 177-214 (267)
204 1t1h_A Gspef-atpub14, armadill 88.7 0.62 2.1E-05 34.7 5.0 33 119-152 8-40 (78)
205 4a3p_A Ubiquitin carboxyl-term 88.5 1 3.5E-05 41.0 7.2 64 18-82 141-212 (217)
206 3ig3_A Plxna3 protein; plexin 86.8 2 6.7E-05 45.3 8.9 75 4-79 233-335 (627)
207 4fo9_A E3 SUMO-protein ligase 86.7 0.48 1.6E-05 46.9 4.1 101 134-241 163-271 (360)
208 3ivf_A Talin-1; FERM domain, c 86.3 2.5 8.4E-05 41.0 8.9 75 5-83 4-96 (371)
209 3hm6_X Plexin-B1; structural g 86.2 1.9 6.5E-05 45.4 8.4 76 4-80 257-363 (644)
210 2d8s_A Cellular modulator of i 85.9 0.58 2E-05 36.2 3.4 48 188-237 15-71 (80)
211 3m62_A Ubiquitin conjugation f 85.8 0.6 2.1E-05 51.6 4.7 55 116-171 888-943 (968)
212 1s3s_G P47 protein; AAA ATPase 85.6 1.5 5.2E-05 36.8 6.2 64 5-71 53-121 (127)
213 2inc_C TOUB protein; DIIRON, 4 84.3 6 0.00021 31.2 8.5 61 16-77 12-81 (83)
214 3kuz_A Plexin-C1; structural g 84.2 2.1 7.2E-05 36.3 6.3 59 17-76 39-124 (126)
215 1vjk_A Molybdopterin convertin 84.1 4.5 0.00015 31.9 8.0 74 2-82 7-98 (98)
216 2bps_A YUKD protein; ubiquitin 83.0 1.2 4E-05 35.0 4.0 68 5-75 5-80 (81)
217 3po0_A Small archaeal modifier 82.8 2.1 7.2E-05 33.0 5.5 59 18-82 19-89 (89)
218 1wgk_A Riken cDNA 2900073H19 p 81.7 11 0.00037 31.0 9.7 78 1-82 8-108 (114)
219 1fm0_D Molybdopterin convertin 81.5 4.3 0.00015 30.4 6.7 58 18-82 18-81 (81)
220 2ct0_A Non-SMC element 1 homol 80.9 1.5 5.2E-05 33.6 3.9 46 188-236 15-64 (74)
221 3m62_A Ubiquitin conjugation f 80.7 2.3 8E-05 47.0 6.7 66 186-262 889-957 (968)
222 1h4r_A Merlin; FERM, neurofibr 80.4 5.9 0.0002 37.2 8.7 76 1-80 19-100 (314)
223 1rws_A Hypothetical protein PF 79.7 1.3 4.4E-05 33.7 3.1 54 20-82 24-77 (77)
224 3ga8_A HTH-type transcriptiona 79.7 0.55 1.9E-05 36.0 1.0 61 189-262 3-65 (78)
225 2qjl_A URM1, ubiquitin-related 79.0 6.5 0.00022 31.0 7.3 76 5-82 2-99 (99)
226 2i1j_A Moesin; FERM, coiled-co 78.6 6.2 0.00021 41.1 8.9 76 1-80 1-83 (575)
227 2cu3_A Unknown function protei 78.3 3.5 0.00012 30.0 5.1 57 20-82 8-64 (64)
228 2djb_A Polycomb group ring fin 77.5 4.4 0.00015 29.6 5.5 35 119-153 15-49 (72)
229 3ge3_C Toluene-4-monooxygenase 77.1 6.1 0.00021 31.2 6.3 63 14-77 12-82 (84)
230 3hcs_A TNF receptor-associated 77.0 1 3.5E-05 38.8 2.1 53 118-171 17-70 (170)
231 4ayb_P DNA-directed RNA polyme 75.3 0.29 1E-05 34.7 -1.5 25 209-233 8-32 (48)
232 1vd4_A Transcription initiatio 74.0 1.8 6.1E-05 30.6 2.4 37 186-237 12-52 (62)
233 2q5w_D Molybdopterin convertin 73.2 3.8 0.00013 30.5 4.2 59 18-82 17-77 (77)
234 2kmm_A Guanosine-3',5'-BIS(dip 73.1 7.2 0.00025 28.4 5.7 62 5-77 1-62 (73)
235 1ef1_A Moesin; membrane, FERM 70.2 17 0.00057 33.6 8.7 73 4-80 1-80 (294)
236 3pwf_A Rubrerythrin; non heme 67.4 2.1 7.1E-05 37.8 1.7 28 186-234 136-163 (170)
237 1lko_A Rubrerythrin all-iron(I 66.0 1.6 5.4E-05 39.0 0.7 27 187-233 154-180 (191)
238 1yuz_A Nigerythrin; rubrythrin 65.2 2.7 9.3E-05 38.0 2.1 27 186-233 169-195 (202)
239 3lrq_A E3 ubiquitin-protein li 63.5 7.1 0.00024 30.6 4.1 36 119-154 22-57 (100)
240 3p8b_A DNA-directed RNA polyme 60.2 4.4 0.00015 31.8 2.2 41 203-251 22-66 (81)
241 3ivf_A Talin-1; FERM domain, c 59.8 25 0.00085 33.8 8.0 75 3-80 84-169 (371)
242 3i2d_A E3 SUMO-protein ligase 59.0 7.3 0.00025 38.6 4.0 52 116-199 246-299 (371)
243 2ctu_A Zinc finger protein 483 58.8 1.4 4.6E-05 31.1 -0.9 37 186-237 16-52 (73)
244 3qij_A Protein 4.1; cytoskelet 58.5 20 0.00068 33.6 6.9 83 2-89 15-104 (296)
245 4gzn_C ZFP-57, zinc finger pro 58.2 2.6 9E-05 30.4 0.6 37 186-237 2-45 (60)
246 2ysj_A Tripartite motif-contai 58.0 12 0.0004 26.4 4.0 34 119-153 20-53 (63)
247 2wbs_A Krueppel-like factor 4; 55.7 6.7 0.00023 28.6 2.5 51 186-236 3-77 (89)
248 2lv2_A Insulinoma-associated p 54.6 4.5 0.00015 31.2 1.4 37 186-237 26-69 (85)
249 4eut_A Serine/threonine-protei 54.5 20 0.00068 34.1 6.3 39 17-55 322-361 (396)
250 2xeu_A Ring finger protein 4; 54.5 6.6 0.00023 27.4 2.2 34 120-153 4-43 (64)
251 1vyx_A ORF K3, K3RING; zinc-bi 54.2 11 0.00037 27.3 3.4 44 188-235 6-58 (60)
252 3ng2_A RNF4, snurf, ring finge 54.1 6.4 0.00022 28.2 2.1 34 120-153 11-50 (71)
253 2y43_A E3 ubiquitin-protein li 53.6 17 0.00057 28.1 4.6 34 119-152 22-55 (99)
254 2ckl_B Ubiquitin ligase protei 51.9 20 0.00067 30.4 5.2 66 120-223 55-120 (165)
255 1oey_A P67-PHOX, neutrophil cy 50.9 13 0.00046 29.1 3.6 45 5-53 6-51 (83)
256 3mjh_B Early endosome antigen 50.8 5.8 0.0002 26.2 1.2 13 188-200 5-17 (34)
257 6rxn_A Rubredoxin; electron tr 50.5 4.3 0.00015 28.5 0.6 16 218-233 23-39 (46)
258 2yur_A Retinoblastoma-binding 50.5 13 0.00045 27.2 3.4 36 118-153 14-49 (74)
259 2ecw_A Tripartite motif-contai 49.0 42 0.0015 24.3 6.1 35 119-154 19-53 (85)
260 4fo9_A E3 SUMO-protein ligase 48.3 14 0.00047 36.5 4.1 35 118-152 214-250 (360)
261 1x6e_A Zinc finger protein 24; 48.1 12 0.0004 26.5 2.7 37 186-237 12-55 (72)
262 2ysl_A Tripartite motif-contai 47.8 26 0.0009 25.0 4.7 34 118-152 19-52 (73)
263 2ebt_A Krueppel-like factor 5; 47.6 25 0.00085 25.9 4.7 52 185-236 12-87 (100)
264 2kvr_A Ubiquitin carboxyl-term 47.6 17 0.00058 30.5 4.0 32 19-50 58-90 (130)
265 1ryq_A DNA-directed RNA polyme 47.4 9.5 0.00032 29.1 2.1 29 223-251 22-54 (69)
266 2eps_A POZ-, at HOOK-, and zin 46.9 24 0.00081 23.5 4.1 36 186-236 10-53 (54)
267 3ztg_A E3 ubiquitin-protein li 46.9 14 0.00048 28.0 3.1 35 119-153 13-47 (92)
268 1bbo_A Human enhancer-binding 46.8 9.4 0.00032 25.4 1.9 34 188-236 1-41 (57)
269 4rxn_A Rubredoxin; electron tr 46.5 5.3 0.00018 29.0 0.6 17 217-233 28-45 (54)
270 2csy_A Zinc finger protein 183 46.2 19 0.00066 26.6 3.8 34 119-153 15-48 (81)
271 3o9x_A Uncharacterized HTH-typ 46.2 9.8 0.00034 30.9 2.3 44 190-236 4-48 (133)
272 2g1e_A Hypothetical protein TA 46.2 42 0.0015 25.2 5.8 60 21-82 19-90 (90)
273 2lt7_A Transcriptional regulat 44.2 6.9 0.00024 32.3 1.0 50 186-236 20-90 (133)
274 2v3b_B Rubredoxin 2, rubredoxi 44.1 5.3 0.00018 29.0 0.2 16 218-233 29-45 (55)
275 3uk3_C Zinc finger protein 217 43.8 13 0.00043 24.7 2.2 43 187-237 3-45 (57)
276 2gqj_A Zinc finger protein KIA 43.7 3.9 0.00013 31.4 -0.6 43 186-236 22-66 (98)
277 2c7h_A RBBP6, retinoblastoma-b 43.6 1.1E+02 0.0036 24.1 7.8 72 6-84 8-85 (86)
278 1s24_A Rubredoxin 2; electron 43.4 4.5 0.00015 32.2 -0.2 44 186-233 33-77 (87)
279 2ctd_A Zinc finger protein 512 43.1 8.8 0.0003 29.6 1.4 43 186-237 32-75 (96)
280 2ecv_A Tripartite motif-contai 42.8 33 0.0011 25.0 4.6 34 119-153 19-52 (85)
281 2xqn_T Testin, TESS; metal-bin 42.8 33 0.0011 27.5 5.0 50 186-238 28-77 (126)
282 1x5w_A Zinc finger protein 64, 42.7 15 0.00051 25.7 2.5 37 186-237 7-50 (70)
283 1yk4_A Rubredoxin, RD; electro 42.1 5.2 0.00018 28.6 -0.1 16 218-233 28-44 (52)
284 2d9h_A Zinc finger protein 692 42.0 8.8 0.0003 27.5 1.2 44 186-237 5-51 (78)
285 2ct2_A Tripartite motif protei 41.9 35 0.0012 25.2 4.7 37 117-154 13-53 (88)
286 2yt9_A Zinc finger-containing 41.5 28 0.00094 25.5 4.0 13 224-236 65-77 (95)
287 2ckl_A Polycomb group ring fin 41.1 21 0.00071 28.0 3.4 37 117-153 13-49 (108)
288 2adr_A ADR1; transcription reg 41.1 12 0.00042 25.1 1.8 34 188-236 2-42 (60)
289 1l8d_A DNA double-strand break 40.3 14 0.00047 29.5 2.2 13 224-236 47-59 (112)
290 1e8j_A Rubredoxin; iron-sulfur 40.2 5.8 0.0002 28.4 -0.1 16 218-233 29-45 (52)
291 1f2i_G Fusion of N-terminal 17 39.7 18 0.0006 25.4 2.5 37 186-237 17-62 (73)
292 1dx8_A Rubredoxin; electron tr 39.0 6.9 0.00024 29.7 0.2 24 218-243 33-57 (70)
293 1jm7_A BRCA1, breast cancer ty 38.6 44 0.0015 25.9 5.0 36 118-154 20-55 (112)
294 2kn9_A Rubredoxin; metalloprot 37.6 6.5 0.00022 30.8 -0.2 52 186-243 25-77 (81)
295 1weo_A Cellulose synthase, cat 37.2 19 0.00065 28.8 2.5 49 188-236 16-70 (93)
296 2ecy_A TNF receptor-associated 37.1 39 0.0013 23.8 4.1 33 119-152 15-47 (66)
297 2wbt_A B-129; zinc finger; 2.7 36.4 24 0.00081 27.7 3.1 37 186-237 72-113 (129)
298 2rgt_A Fusion of LIM/homeobox 35.7 45 0.0016 28.3 5.0 51 186-240 31-81 (169)
299 2daj_A KIAA0977 protein, COBL- 35.5 36 0.0012 27.1 3.8 62 6-70 12-77 (91)
300 3qa8_A MGC80376 protein; kinas 35.5 40 0.0014 35.7 5.4 44 18-61 323-368 (676)
301 2k9x_A Tburm1, uncharacterized 34.7 45 0.0016 27.1 4.5 79 1-83 1-103 (110)
302 3dwg_C 9.5 kDa culture filtrat 34.5 99 0.0034 23.4 6.4 60 20-82 20-93 (93)
303 2lcq_A Putative toxin VAPC6; P 33.8 9.3 0.00032 32.8 0.2 22 210-235 138-159 (165)
304 2jp9_A Wilms tumor 1; DNA bind 33.7 17 0.00059 27.7 1.8 51 186-236 4-78 (119)
305 2lce_A B-cell lymphoma 6 prote 33.6 24 0.00083 24.8 2.5 37 185-236 14-57 (74)
306 1g25_A CDK-activating kinase a 33.5 46 0.0016 23.3 4.0 34 120-153 4-41 (65)
307 3fl2_A E3 ubiquitin-protein li 33.4 27 0.00093 28.0 3.0 33 119-152 52-84 (124)
308 4a0k_B E3 ubiquitin-protein li 32.8 5 0.00017 33.3 -1.7 33 120-152 49-98 (117)
309 1chc_A Equine herpes virus-1 r 32.4 35 0.0012 24.0 3.2 34 120-153 6-39 (68)
310 2m0e_A Zinc finger and BTB dom 32.3 19 0.00065 19.7 1.4 13 225-237 3-15 (29)
311 1z6u_A NP95-like ring finger p 32.1 27 0.00092 29.5 2.8 35 118-153 77-111 (150)
312 2cot_A Zinc finger protein 435 31.9 24 0.00083 25.0 2.2 36 186-236 16-58 (77)
313 4ayc_A E3 ubiquitin-protein li 31.6 23 0.00079 29.2 2.3 31 120-151 54-84 (138)
314 2l52_A Methanosarcina acetivor 31.2 67 0.0023 25.1 4.9 73 4-82 3-99 (99)
315 2kmc_A Fermitin family homolog 30.8 1.6E+02 0.0056 23.8 7.1 72 5-77 20-98 (102)
316 2dlq_A GLI-kruppel family memb 30.5 42 0.0014 25.6 3.6 15 186-200 5-19 (124)
317 1ard_A Yeast transcription fac 30.0 19 0.00064 19.9 1.1 12 225-236 3-14 (29)
318 3nw0_A Non-structural maintena 30.0 28 0.00095 32.0 2.8 88 143-237 137-230 (238)
319 1znf_A 31ST zinc finger from X 29.9 21 0.00072 19.4 1.3 12 225-236 2-13 (27)
320 3hct_A TNF receptor-associated 29.9 47 0.0016 26.4 3.8 35 119-154 18-52 (118)
321 2ecj_A Tripartite motif-contai 29.8 39 0.0013 22.8 2.9 33 119-152 15-47 (58)
322 1ubd_C Protein (YY1 zinc finge 29.5 52 0.0018 25.2 4.0 14 224-237 92-107 (124)
323 1m3v_A FLIN4, fusion of the LI 29.3 25 0.00085 28.4 2.1 54 186-241 30-86 (122)
324 2dlk_A Novel protein; ZF-C2H2 28.8 50 0.0017 23.1 3.5 11 224-234 68-78 (79)
325 3lpe_B DNA-directed RNA polyme 28.6 26 0.0009 25.7 1.9 36 208-251 5-43 (59)
326 2d8t_A Dactylidin, ring finger 28.1 28 0.00095 25.0 2.0 33 120-153 16-48 (71)
327 3u52_E Phenol hydroxylase comp 27.3 2E+02 0.0067 24.0 7.1 67 6-73 24-104 (119)
328 1p7a_A BF3, BKLF, kruppel-like 27.1 23 0.0008 21.0 1.2 13 224-236 11-23 (37)
329 2dmd_A Zinc finger protein 64, 27.0 42 0.0014 24.5 2.9 16 185-200 5-20 (96)
330 1klr_A Zinc finger Y-chromosom 26.8 28 0.00096 19.1 1.5 13 225-237 3-15 (30)
331 1llm_C Chimera of ZIF23-GCN4; 26.7 40 0.0014 24.5 2.7 43 187-237 2-44 (88)
332 1a1h_A QGSR zinc finger peptid 26.3 38 0.0013 24.3 2.5 36 187-237 33-75 (90)
333 1gh9_A 8.3 kDa protein (gene M 26.0 12 0.00041 28.5 -0.4 34 223-257 20-55 (71)
334 1wjp_A Zinc finger protein 295 26.0 25 0.00087 26.6 1.5 41 186-236 14-54 (107)
335 2xjy_A Rhombotin-2; oncoprotei 25.9 74 0.0025 25.5 4.4 51 186-238 27-80 (131)
336 1v8c_A MOAD related protein; r 25.6 56 0.0019 28.4 3.8 60 20-82 17-87 (168)
337 2k5c_A Uncharacterized protein 25.6 20 0.0007 28.3 0.8 17 186-202 49-65 (95)
338 1paa_A Yeast transcription fac 25.2 26 0.00088 19.5 1.1 13 225-237 3-15 (30)
339 1rim_A E6APC2 peptide; E6-bind 25.2 28 0.00095 20.5 1.3 13 225-237 3-15 (33)
340 2kmk_A Zinc finger protein GFI 25.1 46 0.0016 23.3 2.7 13 188-200 1-13 (82)
341 2jox_A Churchill protein; zinc 24.7 3 0.0001 34.1 -4.2 36 208-246 61-103 (106)
342 1rmd_A RAG1; V(D)J recombinati 24.4 78 0.0027 24.8 4.2 34 119-153 23-56 (116)
343 2jtn_A LIM domain-binding prot 24.3 56 0.0019 28.0 3.6 50 186-239 85-134 (182)
344 2elr_A Zinc finger protein 406 24.3 27 0.00091 20.5 1.1 13 224-236 9-21 (36)
345 1ffk_W Ribosomal protein L37AE 23.8 41 0.0014 25.7 2.2 25 186-211 25-49 (73)
346 1v87_A Deltex protein 2; ring- 23.8 88 0.003 24.3 4.4 34 120-153 26-76 (114)
347 2cup_A Skeletal muscle LIM-pro 23.5 58 0.002 24.8 3.2 53 186-241 31-84 (101)
348 2ko5_A Ring finger protein Z; 23.4 26 0.00089 28.3 1.1 56 185-245 25-82 (99)
349 2jx5_A GLUB(S27A); ubiquitin, 23.0 2.2E+02 0.0077 20.7 8.7 68 5-84 1-68 (69)
350 2lvu_A Zinc finger and BTB dom 28.6 18 0.00061 19.7 0.0 11 189-199 3-13 (26)
351 1wgr_A Growth factor receptor- 22.8 1.6E+02 0.0056 23.5 5.8 51 9-61 14-72 (100)
352 2ee8_A Protein ODD-skipped-rel 22.6 89 0.0031 23.1 4.1 15 186-200 15-29 (106)
353 1pft_A TFIIB, PFTFIIBN; N-term 22.3 17 0.00059 25.0 -0.2 9 188-196 5-13 (50)
354 3knv_A TNF receptor-associated 22.0 61 0.0021 27.0 3.2 33 119-152 31-63 (141)
355 2kiz_A E3 ubiquitin-protein li 21.7 1.3E+02 0.0045 20.9 4.7 35 119-153 14-50 (69)
356 3iz5_m 60S ribosomal protein L 21.5 24 0.00083 28.2 0.5 24 186-210 34-57 (92)
357 2kvh_A Zinc finger and BTB dom 21.1 40 0.0014 18.3 1.3 11 189-199 4-14 (27)
358 2kfq_A FP1; protein, de novo p 21.0 31 0.001 20.1 0.8 12 225-236 3-14 (32)
359 1rik_A E6APC1 peptide; E6-bind 20.9 39 0.0013 18.4 1.3 11 189-199 3-13 (29)
360 3izc_m 60S ribosomal protein R 20.6 26 0.0009 28.0 0.6 25 186-211 34-58 (92)
361 3dpl_R Ring-box protein 1; ubi 20.5 92 0.0031 24.8 3.9 34 120-153 38-88 (106)
362 2kdx_A HYPA, hydrogenase/ureas 20.4 76 0.0026 25.6 3.4 11 224-234 89-100 (119)
363 2ecl_A Ring-box protein 2; RNF 20.1 81 0.0028 23.4 3.3 33 121-153 17-63 (81)
No 1
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=152.30 Aligned_cols=78 Identities=26% Similarity=0.439 Sum_probs=73.7
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL 79 (371)
|...||||||+++|+ +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||++||
T Consensus 1 ~~~~m~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL-~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 1 MDEPLSILVRNNKGR--SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL-GEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp --CCEEEEEECTTSC--EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG-GGGTCCTTCEEEEEECC
T ss_pred CCCCEEEEEEeCCCC--EEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcH-HHCCCCCCCEEEEEEec
Confidence 788999999999997 7788999999999999999999 9999999999999999999999 99999999999999999
Q ss_pred cC
Q 017480 80 FG 81 (371)
Q Consensus 80 ~G 81 (371)
+|
T Consensus 78 ~G 79 (79)
T 3phx_B 78 RG 79 (79)
T ss_dssp BC
T ss_pred CC
Confidence 98
No 2
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=1.5e-21 Score=153.22 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=71.1
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
+.||||||+++|+ ++++++++++||.+||++|++. ++|+++|+|+|+|++|+|+.+| .+|+|.+++||+|.+||+|
T Consensus 2 s~m~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL-~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 2 SHMRIVVKTLMGR--TIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp --CEEEEECGGGC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBT-TTTTCCTTCEEEEEECCC-
T ss_pred CeEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCH-HHCCCCCCCEEEEEEeccC
Confidence 4699999999997 7889999999999999999999 9999999999999999999999 9999999999999999999
Q ss_pred CCCCCc
Q 017480 82 GGGDGG 87 (371)
Q Consensus 82 ~~~~~~ 87 (371)
|+++||
T Consensus 79 G~g~~~ 84 (85)
T 3n3k_B 79 GGGGGS 84 (85)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 999987
No 3
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=4.7e-21 Score=150.22 Aligned_cols=82 Identities=29% Similarity=0.472 Sum_probs=73.6
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
+.||||||+++|+ ++++++++++||.+||++|++. ++|+++|+|+|+|++|+|+.+| .+|+|.+++||+|.+|++|
T Consensus 2 s~m~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL-~~~~i~~~~~l~l~~r~~G 78 (85)
T 3mtn_B 2 SHMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKWSTLFLLLRLRG 78 (85)
T ss_dssp -CEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBT-GGGTCCTTCEEEEECCCCC
T ss_pred CeEEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCH-HHcCCCCCCEEEEEEECcC
Confidence 5799999999996 7788999999999999999999 9999999999999999999999 9999999999999999999
Q ss_pred CCCCCc
Q 017480 82 GGGDGG 87 (371)
Q Consensus 82 ~~~~~~ 87 (371)
|+++|+
T Consensus 79 G~ggg~ 84 (85)
T 3mtn_B 79 GGGGGS 84 (85)
T ss_dssp C-----
T ss_pred CCCCCC
Confidence 998876
No 4
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.84 E-value=4.6e-21 Score=153.58 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=71.2
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
||||||+++|+ +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+||+||+
T Consensus 1 M~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA-ADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBT-TTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcH-HHcCCCCCCEEEEEEECCCCC
Confidence 89999999997 7889999999999999999999 9999999999999999999999 999999999999999999999
Q ss_pred CCCccc
Q 017480 84 GDGGAT 89 (371)
Q Consensus 84 ~~~~si 89 (371)
..|.+-
T Consensus 78 ~~~~~~ 83 (88)
T 4fbj_B 78 GLRQKH 83 (88)
T ss_dssp ------
T ss_pred CCCccc
Confidence 998753
No 5
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=2.8e-20 Score=147.23 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=77.2
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+.+|+ ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+|++|
T Consensus 6 ~~m~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL-~~~~i~~g~~i~l~~~~~G 82 (87)
T 1wh3_A 6 SGIQVFVKNPDGG--SYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGL-GIYGIQDSDTLILSKKKGS 82 (87)
T ss_dssp SSEEEEEEETTTE--EEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBH-HHHTCCTTEEEEEEECSCC
T ss_pred CCEEEEEEcCCCC--EEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCH-HHCCCCCCCEEEEEEeccC
Confidence 5799999999996 7789999999999999999999 9999999999999999999999 9999999999999999999
Q ss_pred CCCCC
Q 017480 82 GGGDG 86 (371)
Q Consensus 82 ~~~~~ 86 (371)
|..+|
T Consensus 83 G~~~g 87 (87)
T 1wh3_A 83 GPSSG 87 (87)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 98876
No 6
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=6e-20 Score=147.06 Aligned_cols=79 Identities=30% Similarity=0.384 Sum_probs=68.3
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.||||||+++|+ ++.+++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|++||
T Consensus 9 ~~~i~v~~~~G~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL-~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGK--TFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSC--EEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBS-GGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCC--EEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEeCCCC
Confidence 599999999997 7889999999999999999999 9999999999999999999999 99999999999999999999
Q ss_pred CCC
Q 017480 83 GGD 85 (371)
Q Consensus 83 ~~~ 85 (371)
+.|
T Consensus 86 ~~~ 88 (88)
T 1sif_A 86 GLD 88 (88)
T ss_dssp ---
T ss_pred CCC
Confidence 876
No 7
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-20 Score=148.36 Aligned_cols=82 Identities=26% Similarity=0.425 Sum_probs=71.3
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL 79 (371)
|-..||||||+.+|+ +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|+
T Consensus 1 m~~~m~I~Vk~~~g~--~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL-~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 1 MDEPLSILVRNNKGR--SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL-GEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp -CCEEEEEEEETTSC--EEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBH-HHHHCSTTCEEEEEEC-
T ss_pred CCccEEEEEECCCCC--EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEEc
Confidence 778999999999996 7788899999999999999999 9999999999999999999999 99999999999999999
Q ss_pred cCCCCC
Q 017480 80 FGGGGD 85 (371)
Q Consensus 80 ~G~~~~ 85 (371)
+||+.+
T Consensus 78 ~gg~~~ 83 (88)
T 2hj8_A 78 RGGLEH 83 (88)
T ss_dssp ------
T ss_pred CCCccc
Confidence 999875
No 8
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.80 E-value=1.1e-19 Score=143.81 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=73.8
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+++|+ +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||||.+||+|
T Consensus 11 ~~m~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL-~~~~i~~~~~i~l~~rl~G 87 (88)
T 3dbh_I 11 GSMLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA-ADYKILGGSVLHLVLRLRG 87 (88)
T ss_dssp CCEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBG-GGGTCCTTCEEEECCCCCC
T ss_pred CcEEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcH-HHcCCCCCCEEEEEEeCCC
Confidence 4699999999997 7789999999999999999999 9999999999999999999999 9999999999999999999
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 88 G 88 (88)
T 3dbh_I 88 G 88 (88)
T ss_dssp C
T ss_pred C
Confidence 7
No 9
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.80 E-value=1.8e-19 Score=137.82 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=70.9
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
||||||+.+|+ ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|++||
T Consensus 1 M~i~vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL-~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGK--EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA-ADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBG-GGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEeCCCC
Confidence 89999999997 7789999999999999999999 9999999999999999999999 99999999999999999997
No 10
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.79 E-value=1.2e-19 Score=147.69 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=75.0
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCC-CCcccCCCCCCCCeEEEEeeec
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDES-TPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~-~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
..||||||++++ +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+ .+| ++|+|.+++||+|++|++
T Consensus 14 ~~~~I~Vk~~~~---~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL-~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 14 RKIHVTVKFPSK---QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNL-NEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp CCEEEEEECSSC---EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBH-HHHTCCTTEEEEEEECCC
T ss_pred CCEEEEEEcCCc---EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccH-HHCCCCCCCEEEEEEeCC
Confidence 569999999988 5789999999999999999999 9999999999999999999 999 999999999999999999
Q ss_pred CCCCC
Q 017480 81 GGGGD 85 (371)
Q Consensus 81 G~~~~ 85 (371)
||+.|
T Consensus 90 gg~~~ 94 (94)
T 2kan_A 90 NRAKD 94 (94)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 99876
No 11
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.79 E-value=9.3e-20 Score=141.97 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=72.6
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
+.||||||+++|+ +++++|.+++||.+||++|++. |+|+++|+|+|+|++|+|+.|| ++|+|.+++||||.+|++|
T Consensus 2 ~~m~i~vk~~~g~--~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl-~~~~i~~~~~i~l~~~~~G 78 (79)
T 2uyz_B 2 EYIKLKVIGQDSS--EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP-KELGMEEEDVIEVYQEQTG 78 (79)
T ss_dssp CEEEEEEECTTCC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCH-HHHTCCTTEEEEEEECCCC
T ss_pred CeEEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCH-HHcCCCCCCEEEEEEeccC
Confidence 3699999999997 6788888999999999999999 9999999999999999999999 9999999999999999999
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 79 G 79 (79)
T 2uyz_B 79 G 79 (79)
T ss_dssp -
T ss_pred C
Confidence 7
No 12
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.8e-19 Score=145.10 Aligned_cols=77 Identities=26% Similarity=0.369 Sum_probs=73.5
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+++|+ ++.|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.++++|+|.+||+|
T Consensus 21 ~~m~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~~i~~g~~i~l~~rl~G 97 (98)
T 4hcn_B 21 RPMQIFVKTLTGK--TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRG 97 (98)
T ss_dssp -CCEEEEEETTCC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBS-GGGTCCTTEEEEEECBCSC
T ss_pred CeEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcH-HHCCCCCCCEEEEEEecCC
Confidence 4699999999997 7889999999999999999999 9999999999999999999999 9999999999999999999
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 98 G 98 (98)
T 4hcn_B 98 G 98 (98)
T ss_dssp C
T ss_pred C
Confidence 7
No 13
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.78 E-value=4.7e-19 Score=155.19 Aligned_cols=79 Identities=27% Similarity=0.471 Sum_probs=73.0
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
+..||||||+++|+ +++++|++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||++||+
T Consensus 79 ~~~m~i~vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL-~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 79 DEPLSILVRNNKGR--SSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL-GEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp CCCEEEEEECTTSC--EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG-GGGTCCTTCEEEEEECCC
T ss_pred CCcEEEEEECCCCC--EEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCH-HHcCCCCCCEEEEEEecC
Confidence 46799999999997 7889999999999999999999 9999999999999999999999 999999999999999999
Q ss_pred CCC
Q 017480 81 GGG 83 (371)
Q Consensus 81 G~~ 83 (371)
|||
T Consensus 156 GG~ 158 (159)
T 3rt3_B 156 GGG 158 (159)
T ss_dssp ---
T ss_pred CCC
Confidence 997
No 14
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=5.7e-19 Score=140.45 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=75.5
Q ss_pred cceEEEEEcCCCCeeeEEE-EcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 3 SKTQIFIKSPSNSLTTLTV-GANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l-~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
..||||||+.+|+ .+++| +|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||||.+|++
T Consensus 6 ~~m~i~Vk~~~g~-~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL-~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 6 SGMWIQVRTIDGS-KTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTL-FDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp SCEEEEEEETTCS-CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBH-HHHTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCC-ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCH-HHCCCCCCCEEEEEEeCC
Confidence 5699999999993 26789 599999999999999999 9999999999999999999999 999999999999999999
Q ss_pred CCCCCC
Q 017480 81 GGGGDG 86 (371)
Q Consensus 81 G~~~~~ 86 (371)
||.-.|
T Consensus 84 gG~~~~ 89 (89)
T 1wy8_A 84 SGPSSG 89 (89)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 986544
No 15
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.78 E-value=6.1e-19 Score=142.17 Aligned_cols=78 Identities=24% Similarity=0.311 Sum_probs=72.1
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.||||||+.+|+ ++.|+|++++||.+||++|++. |+|+++|+|+|+|+.|+|+.+| .+|+|.+++||||.+|++||
T Consensus 1 gm~i~vk~~~g~--~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL-~~~~i~~~~~i~l~~r~~gG 77 (96)
T 3k9o_B 1 GMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGY 77 (96)
T ss_dssp -CEEEEEETTCC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEECCCC-
T ss_pred CcEEEEEeCCCC--EEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEEcCCC
Confidence 499999999997 7889999999999999999999 9999999999999999999999 99999999999999999998
Q ss_pred CC
Q 017480 83 GG 84 (371)
Q Consensus 83 ~~ 84 (371)
+.
T Consensus 78 ~~ 79 (96)
T 3k9o_B 78 AD 79 (96)
T ss_dssp --
T ss_pred Cc
Confidence 65
No 16
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.78 E-value=7.6e-19 Score=134.36 Aligned_cols=75 Identities=27% Similarity=0.371 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
||||||+.+|+ ++.+++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|++||
T Consensus 1 M~i~vk~~~g~--~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL-~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT-GGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCC--EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcH-HHcCCCCCCEEEEEEeCCCC
Confidence 89999999996 7789999999999999999999 9999999999999999999999 99999999999999999987
No 17
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.77 E-value=2.8e-19 Score=145.84 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=73.3
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+++|+ +++|+|.+++||.+||++|++. |||+++|||+|+|++|+|+.|| ++|+|.+++||||.+|++|
T Consensus 20 ~~m~I~Vk~~~g~--~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl-~dy~i~~g~~I~l~~~~~G 96 (97)
T 1wyw_B 20 EYIKLKVIGQDSS--EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP-KELGMEEEDVIEVYQEQTG 96 (97)
T ss_dssp CEEEEEEECTTCC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCH-HHHTCCTTCEEEEEESSSC
T ss_pred CcEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCH-HHCCCCCCCEEEEEEecCC
Confidence 3599999999997 6788888999999999999999 9999999999999999999999 9999999999999999999
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 97 G 97 (97)
T 1wyw_B 97 G 97 (97)
T ss_dssp C
T ss_pred C
Confidence 7
No 18
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.77 E-value=5.4e-19 Score=143.14 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=70.4
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
...||||||+ |+ +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|++||+
T Consensus 17 ~~~m~I~Vk~--g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~y~I~~gstI~lv~rl~ 91 (93)
T 2l7r_A 17 RGSMQLFVRA--QE--LHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATL-GQCGVEALTTLEVAGRML 91 (93)
T ss_dssp ---CEEEEES--SS--EEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBH-HHHTCCSSCEEEEECCCC
T ss_pred CCcEEEEEEC--CC--EEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcH-HHCCCCCCCEEEEEEecC
Confidence 3569999999 65 7889999999999999999999 9999999999999999999999 999999999999999999
Q ss_pred CC
Q 017480 81 GG 82 (371)
Q Consensus 81 G~ 82 (371)
||
T Consensus 92 GG 93 (93)
T 2l7r_A 92 GG 93 (93)
T ss_dssp CC
T ss_pred CC
Confidence 87
No 19
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.77 E-value=9.2e-19 Score=145.97 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=76.9
Q ss_pred cceEEEEEcC---CCCeeeEEEEcCC-CCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 3 SKTQIFIKSP---SNSLTTLTVGANQ-FETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 3 ~~MQIFVk~~---~g~~~t~~l~v~~-~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
..||||||++ +|+ +++++|++ ++||.+||++|+.. |||+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+
T Consensus 26 ~~i~i~Vk~~~~~~g~--~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL-~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 26 GPATIRVSKPNENDGQ--FMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSL-AHYNVGAGEILTLSL 102 (111)
T ss_dssp SCEEEEECCTTCSSSC--CEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBT-TTTTCSSSCEEEEEC
T ss_pred CcEEEEEEecccCCCc--EEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcH-HHCCCCCCCEEEEEE
Confidence 4699999999 775 67899998 99999999999999 9999999999999999999999 999999999999999
Q ss_pred eecCCCCCC
Q 017480 78 RVFGGGGDG 86 (371)
Q Consensus 78 rL~G~~~~~ 86 (371)
|++||..||
T Consensus 103 r~~GGk~h~ 111 (111)
T 1we6_A 103 RERSGPSSG 111 (111)
T ss_dssp SSCCSSCCC
T ss_pred EcCCCCCCC
Confidence 999999987
No 20
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.76 E-value=1.2e-18 Score=156.19 Aligned_cols=80 Identities=28% Similarity=0.401 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
||||||+++|+ +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||.+|++||+
T Consensus 1 MqI~Vk~~~Gk--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGK--TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBG-GGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcH-HHcCCCCCCEEEEEEEecccc
Confidence 99999999997 7889999999999999999999 9999999999999999999999 999999999999999999998
Q ss_pred CCCc
Q 017480 84 GDGG 87 (371)
Q Consensus 84 ~~~~ 87 (371)
.+|=
T Consensus 78 k~~v 81 (169)
T 3l0w_B 78 GETI 81 (169)
T ss_dssp -CCE
T ss_pred cccc
Confidence 7763
No 21
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.2e-18 Score=140.44 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=76.6
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc---CCCCCceEEEeCCeeCCCCCCcccCC--CCCCCCeEEEEe
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL---DQSLSSLYFTLNGKILDESTPLFKNP--QIAPLSTLYLRQ 77 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~~q~Li~~Gk~L~D~~tL~~~~--~I~~~sTL~L~l 77 (371)
..|||+||+.++...+++|++++++||.+||++|++. ++|+++|+|+|+|++|+|+.+| .+| +|.+++||||++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL-~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCL-RDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCH-HHHSCSSSCSEEEEEEC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCH-HHHhcCCCCCCEEEEEe
Confidence 3599999999997667889998999999999999986 7999999999999999999999 999 999999999999
Q ss_pred eecCCCCCC
Q 017480 78 RVFGGGGDG 86 (371)
Q Consensus 78 rL~G~~~~~ 86 (371)
|++||+..|
T Consensus 85 ~~~gg~~~~ 93 (93)
T 1wgd_A 85 NVKSGPSSG 93 (93)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 999987654
No 22
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.76 E-value=1.3e-18 Score=142.18 Aligned_cols=71 Identities=11% Similarity=0.200 Sum_probs=67.6
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
..||||||+.+|+ +++|+|++++||.+||++|+++ |+|+++|||+|+|++|+|+.|| ++|+|++++||+|-
T Consensus 20 ~mIqI~Vk~~~Gk--k~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL-~dY~I~dgstLhL~ 91 (93)
T 3plu_A 20 HMIEVVVNDRLGK--KVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISL-EDYEVHDQTNLELY 91 (93)
T ss_dssp CEEEEEEECTTSC--EEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEE
T ss_pred ceEEEEEECCCCC--EEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCH-HHcCCCCCCEEEEE
Confidence 4699999999997 7889999999999999999999 9999999999999999999999 99999999999984
No 23
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.75 E-value=2e-18 Score=137.71 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=71.4
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+++|+ +++|+|++++||.+||++|++. |+|+++|+|+|+|+.|+|+.+| .+|+| +++||||++|+++
T Consensus 4 ~~m~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL-~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 4 DSLEVLVKTLDSQ--TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKL-QEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp CEEEEEEEETTCC--EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG-GGGTC-TTEEEEEEECCCC
T ss_pred cEEEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCH-HHcCC-CCcEEEEEecCCC
Confidence 5699999999997 6788888999999999999999 9999999999999999999999 99999 8999999999998
Q ss_pred CCCCCc
Q 017480 82 GGGDGG 87 (371)
Q Consensus 82 ~~~~~~ 87 (371)
+....+
T Consensus 80 ~~~~~~ 85 (90)
T 4dwf_A 80 QTHLPS 85 (90)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 765443
No 24
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.75 E-value=3.2e-18 Score=143.09 Aligned_cols=76 Identities=26% Similarity=0.366 Sum_probs=72.5
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.||||||+++|+ ++.|+|++++||.+||.+|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||||++||+||
T Consensus 35 ~m~I~Vk~~~G~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 35 AMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp CEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-TTTTCCTTCEEEEEECCCC-
T ss_pred cEEEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcH-HHCCCCCCCEEEEEEecCCC
Confidence 599999999997 7789999999999999999999 9999999999999999999999 99999999999999999997
No 25
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.75 E-value=3e-18 Score=137.45 Aligned_cols=75 Identities=21% Similarity=0.300 Sum_probs=71.7
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
..||||||+.+|+ ++.|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|||.+++||+|++|||
T Consensus 16 ~~m~i~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL-~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 16 GSMQIFVNTLTGT--HITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CSEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBT-GGGTCCTTCEEEEECCCC
T ss_pred CeEEEEEEeCCCC--EEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcH-HHCCCCCCCEEEEEEecC
Confidence 4699999999997 7889999999999999999999 9999999999999999999999 999999999999999987
No 26
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.74 E-value=1.1e-18 Score=148.29 Aligned_cols=77 Identities=18% Similarity=0.191 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCC-------CCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIA-------PLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~-------~~sTL~L~ 76 (371)
||+||+...++ .+++|+|.+++||.+||++|+++ |||+++|||+|+|++|+|+.|| ++|||+ .++||||+
T Consensus 1 M~mfl~ir~~k-tti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TL-sdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMIRRHK-TTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTL-GECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBT-EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBH-HHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEEecCC-EEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCH-HHcCcccccccCCCCCEEEEE
Confidence 44455444454 36889999999999999999999 9999999999999999999999 999999 79999999
Q ss_pred eeecCCCC
Q 017480 77 QRVFGGGG 84 (371)
Q Consensus 77 lrL~G~~~ 84 (371)
+| .||.-
T Consensus 79 lr-~~g~f 85 (118)
T 2fnj_B 79 FR-ADDTF 85 (118)
T ss_dssp EB-SSSCB
T ss_pred ec-CCCce
Confidence 99 55543
No 27
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.9e-18 Score=139.33 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHH-hcc-CCCCCceEEEeCCeeCCCCCCcccCCCC-CCCCeEEEEee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSL-LSL-DQSLSSLYFTLNGKILDESTPLFKNPQI-APLSTLYLRQR 78 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i-~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I-~~~sTL~L~lr 78 (371)
||||||+++|+..++.+++++++||.+||++| ++. |+|+++|+|+|+|++|+|+.+| ++|+| ++++||+|.++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL-~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFL-SDLKVTPANSTITVMIK 77 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBH-HHHCCCGGGCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCH-HHcCCCCCCCEEEEEcC
Confidence 99999999998444444566999999999999 888 9999999999999999999999 99999 79999999876
No 28
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.59 E-value=1.3e-19 Score=139.74 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
||||||+.+|+ ++++++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+||||
T Consensus 1 M~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL-~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSY--GFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTV-QNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 99999999997 6788999999999999999999 9999999999999999999999 9999999999999999997
No 29
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.74 E-value=5.3e-18 Score=137.82 Aligned_cols=82 Identities=24% Similarity=0.349 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
||||||+.+|+ ++.+++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.++++|+|.+|++||.
T Consensus 1 M~I~Vk~~~g~--~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL-~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCH-HHcCCCCCCEEEEEEeCCCCC
Confidence 99999999996 7789999999999999999999 9999999999999999999999 999999999999999999987
Q ss_pred CCCccc
Q 017480 84 GDGGAT 89 (371)
Q Consensus 84 ~~~~si 89 (371)
.-++.+
T Consensus 78 ~i~~~~ 83 (98)
T 1yx5_B 78 DPNSSS 83 (98)
T ss_dssp ------
T ss_pred cCcccc
Confidence 766665
No 30
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.73 E-value=1.6e-19 Score=154.44 Aligned_cols=80 Identities=25% Similarity=0.327 Sum_probs=3.7
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
||||||+++|+ +++|+|++++||.+||++|++. |||+++|+|+|+|++|+|+.+| ++|+|.+++||+|++|++||.
T Consensus 1 M~I~Vk~~~G~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGK--TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCch-hhhccCCCCEEEEEEEcCCCC
Confidence 89999999997 6788999999999999999999 9999999999999999999999 999999999999999999998
Q ss_pred CCCc
Q 017480 84 GDGG 87 (371)
Q Consensus 84 ~~~~ 87 (371)
.+|+
T Consensus 78 ~~~s 81 (128)
T 3u5e_m 78 IEPS 81 (128)
T ss_dssp CCHH
T ss_pred CChh
Confidence 8775
No 31
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=9.2e-18 Score=130.12 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=69.4
Q ss_pred ceEEEEEcCCCCeee-EEEE-cCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480 4 KTQIFIKSPSNSLTT-LTVG-ANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t-~~l~-v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL 79 (371)
.||||||+.+|+ + ++++ +++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+|+
T Consensus 2 ~m~i~Vk~~~g~--~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL-~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGR--QTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL-FDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSS--CEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT-TTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCC--EEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCH-HHcCCCCCCEEEEEEeC
Confidence 699999999997 5 4788 99999999999999999 9999999999999999999999 99999999999999986
No 32
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.73 E-value=5.3e-18 Score=154.92 Aligned_cols=80 Identities=26% Similarity=0.361 Sum_probs=75.3
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
|-.||||||+++|+ +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|++++||||++||+
T Consensus 103 ~~eMqI~VKtl~Gk--t~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL-~dygI~~gstI~Lvlrlr 179 (189)
T 3q3f_A 103 HYGGQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLR 179 (189)
T ss_dssp CCCEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBG-GGGTCCTTCEEEECCCCC
T ss_pred ccceeeeeecCCCC--EEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCH-HHCCCCCCCEEEEEEEcC
Confidence 34699999999997 7889999999999999999999 9999999999999999999999 999999999999999999
Q ss_pred CCCC
Q 017480 81 GGGG 84 (371)
Q Consensus 81 G~~~ 84 (371)
||+.
T Consensus 180 GG~~ 183 (189)
T 3q3f_A 180 GGGQ 183 (189)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 9854
No 33
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=6.3e-18 Score=134.78 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=70.5
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCee-CCCCCCcccCCCCCCCCeEEEEee
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKI-LDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~-L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
++.|+||||+++|+ +++++|++++||++||++|++. |+|+++|+|+|+|++ |+|+.+| ++|+|.+++||+|++|
T Consensus 8 ~~~~~i~vk~l~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL-~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 8 HSHMKFLVENLNGS--SFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTV-EQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCCEEEEEEETTSC--EEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBH-HHHTCCTTSCEEEEEC
T ss_pred cCceEEEEEecCCc--EEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCH-HHcCCCCCCEEEEEEc
Confidence 46799999999997 7889999999999999999999 999999999999999 9999999 9999999999999886
No 34
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=4.3e-18 Score=140.87 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=67.5
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
.+||||||+++|+ +++|+|++++||.+||++|+++ |+|+++|||+|+|++|+|+.+| ++|+|++++||||.
T Consensus 27 ~mm~I~VKtl~Gk--~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL-~dygI~~gstlhL~ 98 (100)
T 1uh6_A 27 TMIEVVCNDRLGK--KVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSL-GDYEIHDGMNLELY 98 (100)
T ss_dssp CEEEEEEECSSSS--CEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBH-HHHTCCTTEEEEEE
T ss_pred CeEEEEEECCCCC--EEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCH-HHcCCCCCCEEEEE
Confidence 3599999999996 7889999999999999999999 9999999999999999999999 99999999999986
No 35
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.72 E-value=1.8e-17 Score=142.45 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=71.2
Q ss_pred cceEEEEEcCCCCeeeE-EEEcCCCCCHHHHHHHH-----hcc-CCCC--CceEEEeCCeeCCCCCCcccCCCCCCC---
Q 017480 3 SKTQIFIKSPSNSLTTL-TVGANQFETLNHLKRSL-----LSL-DQSL--SSLYFTLNGKILDESTPLFKNPQIAPL--- 70 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~-~l~v~~~~TV~~lK~~i-----~~~-gi~~--~~q~Li~~Gk~L~D~~tL~~~~~I~~~--- 70 (371)
..|||+||+++|. .+ .+++++++||.+||++| ++. |+|+ ++|||||+||+|+|+.|| ++|+|+.+
T Consensus 15 ~~~~i~~kt~~G~--~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TL-sdy~I~~~~~~ 91 (126)
T 1se9_A 15 NQLEIKFRLTDGS--DIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTV-KDYRSPVSNLA 91 (126)
T ss_dssp CCEEEEEEETTSC--EEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBG-GGGSCCTTSCT
T ss_pred ccEEEEEEECCCC--EEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcH-HHcCCCcCCcc
Confidence 5699999999996 45 68999999999999999 567 8886 899999999999999999 99999988
Q ss_pred ---CeEEEEeeecCCC
Q 017480 71 ---STLYLRQRVFGGG 83 (371)
Q Consensus 71 ---sTL~L~lrL~G~~ 83 (371)
+|+||++|++||+
T Consensus 92 ~~v~tmhlVlrl~g~~ 107 (126)
T 1se9_A 92 GAVTTMHVIIQAPVTE 107 (126)
T ss_dssp TCCEEEEEEECCCSSC
T ss_pred CCcEEEEEEeccCCcc
Confidence 7899999999874
No 36
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=137.68 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=72.5
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+.+|+ ++.++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+|++|
T Consensus 34 ~~m~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~gI~~gs~I~l~~rl~G 110 (111)
T 2ojr_A 34 LAMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRG 110 (111)
T ss_dssp SCEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBT-TTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCC--EEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEeCCC
Confidence 3699999999996 6788999999999999999999 9999999999999999999999 9999999999999999998
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 111 G 111 (111)
T 2ojr_A 111 G 111 (111)
T ss_dssp -
T ss_pred C
Confidence 7
No 37
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.71 E-value=5.2e-19 Score=156.38 Aligned_cols=76 Identities=28% Similarity=0.406 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
||||||+++|+ +++|+|++++||.+||++|++. |||+++|+|+|+|++|+|+.+| ++|+|++++||+|++||+|||
T Consensus 1 MqI~VK~l~G~--~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGK--TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCC--EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcH-HHcCCCCCCEEEEEeeccCCC
Confidence 99999999997 6788999999999999999999 9999999999999999999999 999999999999999999975
No 38
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.4e-17 Score=137.62 Aligned_cols=79 Identities=25% Similarity=0.338 Sum_probs=74.9
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
+..+|||||+++|+ ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|++
T Consensus 7 ~~~~~i~vk~l~G~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~ygI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 7 HGEFQIFAKTLTGK--TITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTL-SDYNIQRESTLHLVLRLR 83 (114)
T ss_dssp CCCCEEEEEETTCC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT-TTTTCCSSCEEEEEECCC
T ss_pred CCcEEEEEEeCCCc--EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcH-HHCCCCCCCEEEEEEEcC
Confidence 35689999999997 7889999999999999999999 9999999999999999999999 999999999999999999
Q ss_pred CCC
Q 017480 81 GGG 83 (371)
Q Consensus 81 G~~ 83 (371)
||.
T Consensus 84 GG~ 86 (114)
T 2kdi_A 84 GGS 86 (114)
T ss_dssp SSC
T ss_pred CCc
Confidence 875
No 39
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.70 E-value=4.2e-17 Score=134.24 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=69.5
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHH-hcc-CCCCCceEEEeCCeeCCCCCCcccCCCC-CCCCeEEEEee
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSL-LSL-DQSLSSLYFTLNGKILDESTPLFKNPQI-APLSTLYLRQR 78 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i-~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I-~~~sTL~L~lr 78 (371)
..||||||+++|+..++.|+|++++||.+||++| ++. |+|+++|+|+|+|++|+|+.+| ++|+| .+++||+|.++
T Consensus 18 ~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL-~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 18 AAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFL-SDLKVTPANSTITVMIK 95 (98)
T ss_dssp CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBG-GGSCCBTTBCEEEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCH-HHcCcCCCCCEEEEEEe
Confidence 5699999999998666677888999999999999 888 9999999999999999999999 99999 99999999875
No 40
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=4.3e-17 Score=138.21 Aligned_cols=77 Identities=13% Similarity=0.076 Sum_probs=69.2
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhc------c-CC--CCCceEEEeCCeeCCCCCCcccCCCCCCC--C
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLS------L-DQ--SLSSLYFTLNGKILDESTPLFKNPQIAPL--S 71 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~------~-gi--~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~--s 71 (371)
..||||||+++|+ +++|+|++++||++||++|++ + ++ |+++|||||+||+|+|+.|| ++|+|+.+ +
T Consensus 15 ~~m~I~vKtl~G~--t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL-~~y~I~~~~~~ 91 (116)
T 1wgh_A 15 DMINLRLILVSGK--TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTL-GALKLPFGKTT 91 (116)
T ss_dssp SSEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBT-TTTTCCSSCEE
T ss_pred CeEEEEEEeCCCC--EEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcH-HHcCCCCCCce
Confidence 4599999999996 788999999999999999998 6 64 79999999999999999999 99999766 6
Q ss_pred eEEEEeeecCC
Q 017480 72 TLYLRQRVFGG 82 (371)
Q Consensus 72 TL~L~lrL~G~ 82 (371)
||||++|+.+.
T Consensus 92 tlhLvlr~~~~ 102 (116)
T 1wgh_A 92 VMHLVARETLP 102 (116)
T ss_dssp EEEEEECSSCS
T ss_pred EEEEEccCCCC
Confidence 89999988744
No 41
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=130.53 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=67.9
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
..||||||+++|+ ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+| +++||||++|
T Consensus 16 ~~m~i~Vk~~~g~--~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 16 DSLEVLVKTLDSQ--TRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKL-QEYNV-GGKVIHLVER 88 (88)
T ss_dssp CEEEEEEEETTSC--EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG-GGGTC-TTEEEEEEEC
T ss_pred CeEEEEEEcCCCC--EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcH-HHcCC-CCcEEEEEEC
Confidence 4599999999997 6778888899999999999999 9999999999999999999999 99999 8999999987
No 42
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.1e-17 Score=126.75 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=70.9
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
..||||||+.+|+ ++++++++++||++||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.+|++
T Consensus 6 ~~m~i~vk~~~g~--~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL-~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 6 SGMQLTVKALQGR--ECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRL-SDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSEEEEEEETTSC--EEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBG-GGGTCCSSBCCEEECCCC
T ss_pred CcEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcH-HHcCCCCCCEEEEEEeCC
Confidence 4699999999996 7788999999999999999999 9999999999999999999999 999999999999999975
No 43
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=146.77 Aligned_cols=78 Identities=27% Similarity=0.376 Sum_probs=70.1
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
+..||||||+.+|+ ++++++++++||.+||.+|+.. |||+++|+|+|+|++|+|+.+| .+|+|++++||||.+|||
T Consensus 94 ~gg~~i~Vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL-~~y~i~~g~tl~l~~rlr 170 (172)
T 3u30_A 94 RGGMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLR 170 (172)
T ss_dssp CCCEEEEEEESSCC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBS-GGGTCCTTCEEEECC---
T ss_pred cccccceeecccCc--ceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcH-HHhCCCCCCEEEEEEecC
Confidence 46799999999997 7888999999999999999999 9999999999999999999999 999999999999999999
Q ss_pred CC
Q 017480 81 GG 82 (371)
Q Consensus 81 G~ 82 (371)
||
T Consensus 171 gG 172 (172)
T 3u30_A 171 GG 172 (172)
T ss_dssp --
T ss_pred CC
Confidence 97
No 44
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.70 E-value=1.5e-18 Score=158.47 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=1.9
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
||||||+++|+ +++|+|++++||.+||++|++. |||+++|+|+|+|++|+|+.+| + +++||||++||+||+
T Consensus 1 MqI~VKtL~Gk--titLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TL-s-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGE--TKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELV-T-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCC--EEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCcc-c-----CCCEEEEEEecCCCc
Confidence 99999999996 7889999999999999999999 9999999999999999999999 5 889999999999987
Q ss_pred CC
Q 017480 84 GD 85 (371)
Q Consensus 84 ~~ 85 (371)
.+
T Consensus 73 ~k 74 (189)
T 2xzm_9 73 KK 74 (189)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 45
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=1.2e-17 Score=135.01 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=74.2
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+. |+ +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||||++|++|
T Consensus 16 ~~m~i~Vk~~-g~--~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL-~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 16 RIIRVSVKTP-QD--CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDIL-SQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp CEEEEEEECS-SS--EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCH-HHHTCCTTEEEECCBCCSS
T ss_pred CcEEEEEEEC-Ce--EEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCH-HHCCCCCCCEEEEEEeCCC
Confidence 4699999998 75 6788888999999999999999 9999999999999999999999 9999999999999999999
Q ss_pred CCCCC
Q 017480 82 GGGDG 86 (371)
Q Consensus 82 ~~~~~ 86 (371)
|+.-|
T Consensus 92 g~~~~ 96 (96)
T 1wx8_A 92 GPSSG 96 (96)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 86544
No 46
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.69 E-value=3.8e-17 Score=140.16 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=71.8
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhc------c-CC--CCCceEEEeCCeeCCCCCCcccCCCCCCCC--e
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLS------L-DQ--SLSSLYFTLNGKILDESTPLFKNPQIAPLS--T 72 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~------~-gi--~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~s--T 72 (371)
.|+|+||+++|. +++|++++++||++||++|++ + |+ ++++|||||+||+|+|+.|| ++|+|+.++ |
T Consensus 17 ~m~I~vktl~G~--~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL-~~y~I~~~~~~t 93 (125)
T 2gow_A 17 MINLRLILVSGK--TKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTL-GALKLPFGKTTV 93 (125)
T ss_dssp CEEEEEECTTSC--EEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBT-GGGCCCTTSEEE
T ss_pred eEEEEEEeCCCC--EEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcH-HHcCCCCCCceE
Confidence 399999999996 789999999999999999998 7 77 59999999999999999999 999999665 8
Q ss_pred EEEEeeecCCCCC
Q 017480 73 LYLRQRVFGGGGD 85 (371)
Q Consensus 73 L~L~lrL~G~~~~ 85 (371)
|||++|++|++-+
T Consensus 94 lhlv~r~~~~~~~ 106 (125)
T 2gow_A 94 MHLVARETLPEPN 106 (125)
T ss_dssp EEEEECSCCSSSS
T ss_pred EEEEecCCCCccc
Confidence 9999999986655
No 47
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=3e-17 Score=135.79 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=72.8
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
+++||+.+..|.-.+++|+|++++||.+||++|++. |+|+++|+|||+||+|+|+.|| .+|+|++++|| |+++|+|.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL-~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTL-EEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBH-HHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcH-HHcCCCCCCEE-EEEEECCC
Confidence 578888775533468899999999999999999999 9999999999999999999999 99999999999 99999998
Q ss_pred CCCC
Q 017480 83 GGDG 86 (371)
Q Consensus 83 ~~~~ 86 (371)
..+.
T Consensus 95 ~~~~ 98 (100)
T 1wju_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred Cccc
Confidence 7654
No 48
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.68 E-value=4.4e-17 Score=138.42 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCC-------CCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAP-------LSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~-------~sTL~L~ 76 (371)
|.+||+-..++ .|+.|++.+++||.+||++|+.. |||+++|||+|+|++|+|+.|| ++|||++ ++||||+
T Consensus 1 m~vFl~Ikr~k-tTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL-~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHK-TTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTL-GECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBT-EEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-TTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCC-EEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCH-HHcCCCcCcccCCCCCEEEEE
Confidence 77888887776 57899999999999999999999 9999999999999999999999 9999999 9999999
Q ss_pred eee
Q 017480 77 QRV 79 (371)
Q Consensus 77 lrL 79 (371)
+|+
T Consensus 79 lr~ 81 (118)
T 4ajy_B 79 FRA 81 (118)
T ss_dssp ECC
T ss_pred Eec
Confidence 996
No 49
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.4e-17 Score=133.10 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=68.5
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
||||||+++|+ +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|||.+++||+|.++-.
T Consensus 2 m~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKE--KVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTV-SECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCC--EEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBT-TTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCH-HHcCCCCCCEEEEEEcCC
Confidence 99999999997 7889999999999999999999 9999999999999999999999 999999999999998854
No 50
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=2.1e-17 Score=137.79 Aligned_cols=76 Identities=13% Similarity=0.116 Sum_probs=70.6
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCC---------------CceEEEeCCeeCC-CCCCcccCCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSL---------------SSLYFTLNGKILD-ESTPLFKNPQ 66 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~---------------~~q~Li~~Gk~L~-D~~tL~~~~~ 66 (371)
.||||||+++|+ +++|+|.+++||.+||+.|++. ++|+ ++|+|+|+|++|. |+.+| .+||
T Consensus 7 ~M~I~Vk~l~g~--~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL-~dyg 83 (105)
T 1v2y_A 7 GMTVRVCKMDGE--VMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKL-RDYG 83 (105)
T ss_dssp SEEEEEECSSSC--EEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBH-HHHT
T ss_pred cEEEEEEecCCC--EEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCH-HHcC
Confidence 499999999997 7889999999999999999999 8876 5789999999996 67999 9999
Q ss_pred CCCCCeEEEEeeecCC
Q 017480 67 IAPLSTLYLRQRVFGG 82 (371)
Q Consensus 67 I~~~sTL~L~lrL~G~ 82 (371)
|.+++||||++||+|.
T Consensus 84 I~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 84 IRNRDEVSFIKKLGQK 99 (105)
T ss_dssp CCSSEEEEEEECSCSC
T ss_pred CCCCCEEEEEehhccC
Confidence 9999999999999986
No 51
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.67 E-value=9.7e-17 Score=134.61 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=75.2
Q ss_pred cceEEEEEcCC----------CCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCC
Q 017480 3 SKTQIFIKSPS----------NSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLS 71 (371)
Q Consensus 3 ~~MQIFVk~~~----------g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~s 71 (371)
..++|+|+..+ | .+++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G--~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL-~~y~i~~g~ 100 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNG--QGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSL-AYYNMASGA 100 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSS--EEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBH-HHHTCCSSC
T ss_pred CCEEEEEEcCCCccccccccCC--eEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCH-HHCCCCCCC
Confidence 35899999864 4 37889999999999999999999 9999999999999999999999 999999999
Q ss_pred eEEEEeeecCCCCCC
Q 017480 72 TLYLRQRVFGGGGDG 86 (371)
Q Consensus 72 TL~L~lrL~G~~~~~ 86 (371)
||||++|++||+.+|
T Consensus 101 ~i~lv~rl~GGk~~~ 115 (115)
T 1we7_A 101 VIHLALKERSGPSSG 115 (115)
T ss_dssp EEEEEECCCSCCSCC
T ss_pred EEEEEEEcCCCCCCC
Confidence 999999999999876
No 52
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.66 E-value=3.1e-16 Score=123.21 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=68.3
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc----CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL----DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~----gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
..||||||+.+|+ ++++++++++||.+||++|+.. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||.++
T Consensus 4 ~~m~i~vk~~~g~--~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 4 MAVTITLKTLQQQ--TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI-RDYRIDEKNFVVVMVT 80 (85)
T ss_dssp CCEEEEEEETTSC--EEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBG-GGGCCCTTSEEEEEEC
T ss_pred ceEEEEEEECCCC--EEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCH-HHcCCCCCCEEEEEEc
Confidence 4699999999996 7788999999999999999993 7999999999999999999999 9999999999999876
Q ss_pred e
Q 017480 79 V 79 (371)
Q Consensus 79 L 79 (371)
-
T Consensus 81 ~ 81 (85)
T 2wyq_A 81 K 81 (85)
T ss_dssp -
T ss_pred C
Confidence 3
No 53
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.4e-16 Score=130.94 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=72.6
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+.+|+ +.|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.+|++|
T Consensus 21 ~~m~I~Vk~~~g~---~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 21 HLIKVTVKTPKDK---EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSL-AQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp TEEEEEEECSSCE---EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBH-HHHTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCc---EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcH-HHCCCCCCCEEEEEEcCCC
Confidence 4599999999994 578888899999999999999 9999999999999999999999 9999999999999999998
Q ss_pred CCC
Q 017480 82 GGG 84 (371)
Q Consensus 82 ~~~ 84 (371)
+-.
T Consensus 97 ~p~ 99 (100)
T 1yqb_A 97 RAM 99 (100)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 54
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.66 E-value=1.9e-16 Score=121.88 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
||||||+ +|+ ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|||.+++||||..+
T Consensus 5 m~i~vk~-~g~--~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL-~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQD--KWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV-ESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTE--EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCE--EEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCH-HHcCCCCCCEEEEEEc
Confidence 9999999 885 7789999999999999999999 9999999999999999999999 9999999999999764
No 55
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=140.80 Aligned_cols=77 Identities=27% Similarity=0.375 Sum_probs=73.4
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+++|+ +++|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||+|.+|++|
T Consensus 19 ~~m~i~Vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL-~~~~i~~~~~l~l~~~~~g 95 (172)
T 3u30_A 19 SHMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRG 95 (172)
T ss_dssp CCEEEEEEETTTE--EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT-GGGTCCTTCEEEEEECCCC
T ss_pred CcEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCH-hHcCCcccceeeeeecccc
Confidence 4699999999996 7889999999999999999999 9999999999999999999999 9999999999999999997
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 96 g 96 (172)
T 3u30_A 96 G 96 (172)
T ss_dssp C
T ss_pred c
Confidence 6
No 56
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.4e-16 Score=134.70 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=68.6
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+. |+ +++|+|++++||.+||.+|+.. |||+++|+|+|+|+.|+|+.+| .+|+|.+++||+|++|++|
T Consensus 31 ~~m~I~Vk~~-g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 31 KIIKVTVKTP-KE--KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTL-IQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp CCEEEEEECS-SC--EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCG-GGTTCSSSEEEEEEEC---
T ss_pred CcEEEEEEeC-Ce--EEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEeccCC
Confidence 4699999999 75 6889999999999999999999 9999999999999999999999 9999999999999999998
Q ss_pred CCC
Q 017480 82 GGG 84 (371)
Q Consensus 82 ~~~ 84 (371)
|+.
T Consensus 107 g~~ 109 (125)
T 1j8c_A 107 NSS 109 (125)
T ss_dssp ---
T ss_pred CCC
Confidence 865
No 57
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=9.6e-17 Score=131.95 Aligned_cols=85 Identities=13% Similarity=0.016 Sum_probs=74.7
Q ss_pred CcceEEEEEcCCCC--eeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCC-CCcccCCCCCCCCeEEEEe
Q 017480 2 RSKTQIFIKSPSNS--LTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDES-TPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 2 ~~~MQIFVk~~~g~--~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~-~tL~~~~~I~~~sTL~L~l 77 (371)
...|||+||+.++. -++++|+|++++||.+||++|++. |||+++|+|+|+|++|+|+ .+| .+|+|.++++|+|.+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL-~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSL-GSYGLKDGDMVVLLQ 83 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBH-HHHTCCTTEEEEECB
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccH-HHCCCCCCCEEEEEE
Confidence 35699999997652 137789999999999999999999 9999999999999999887 689 999999999999999
Q ss_pred eecCCCCCCc
Q 017480 78 RVFGGGGDGG 87 (371)
Q Consensus 78 rL~G~~~~~~ 87 (371)
|++||--..+
T Consensus 84 ~~~gg~~~~~ 93 (102)
T 1v5o_A 84 KDNVGLRTPG 93 (102)
T ss_dssp CCCCCCSSCC
T ss_pred CCCCCCCCCC
Confidence 9998854444
No 58
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.66 E-value=2.6e-16 Score=135.28 Aligned_cols=78 Identities=27% Similarity=0.376 Sum_probs=73.4
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
+..|||+||+.+|+ ++++++++++||.+||.+|+.. |+|+++|+|+|+|++|+|+.+| ++|+|.++++|||.+|++
T Consensus 74 ~~~~~i~Vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL-~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 74 RGGMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp TTCEEEEEEESSSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEECCC
T ss_pred ccccceeeeecCCC--EEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCH-HHcCCCCCCEEEEEEecC
Confidence 45699999999996 7788999999999999999999 9999999999999999999999 999999999999999999
Q ss_pred CC
Q 017480 81 GG 82 (371)
Q Consensus 81 G~ 82 (371)
||
T Consensus 151 GG 152 (152)
T 3b08_A 151 GG 152 (152)
T ss_dssp C-
T ss_pred CC
Confidence 87
No 59
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.8e-16 Score=125.93 Aligned_cols=79 Identities=20% Similarity=0.206 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc----CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL----DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~----gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
||||||+.+|+ +++++|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||+|.++..
T Consensus 1 M~I~Vk~~~g~--~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL-~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQ--TFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTAL-KEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCC--EEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBG-GGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCC--EEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcH-HHCCCCCCCEEEEEEeCC
Confidence 99999999997 7789999999999999999986 6999999999999999999999 999999999999998865
Q ss_pred CCCCCC
Q 017480 81 GGGGDG 86 (371)
Q Consensus 81 G~~~~~ 86 (371)
.++-..
T Consensus 78 ~~~~~~ 83 (95)
T 1uel_A 78 KAVSTP 83 (95)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 444433
No 60
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=3e-16 Score=129.62 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=73.4
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+..|+ +.|+|++++||.+||++|++. |||+++|+|+|+|+.|+|+.+| .+|+|.++++|||.+|++|
T Consensus 16 ~~m~I~Vk~~~g~---~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 16 HLIKVTVKTPKDK---EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSL-AQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp SEEEEEEECSSCE---EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCH-HHHTCCTTEEEEEEECCCC
T ss_pred ceEEEEEEeCCCc---EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcH-HHcCCCCCCEEEEEEcCCC
Confidence 3599999999984 578888899999999999999 9999999999999999999999 9999999999999999998
Q ss_pred CCCC
Q 017480 82 GGGD 85 (371)
Q Consensus 82 ~~~~ 85 (371)
|...
T Consensus 92 ~~~~ 95 (106)
T 1wx7_A 92 RAMG 95 (106)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8754
No 61
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=2.6e-16 Score=130.25 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=71.7
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.||||||+++|+ ++.++|++++||.+||.+|+.. |+|+++|+|+|+|++|+|+.+| ++|+|.+++||||++|...+
T Consensus 23 ~m~I~Vk~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 23 ECQLRLRLSTGK--DLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKF-EELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp SEEEEEEETTTE--EEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHH-HHCCCSSSCEEEEECCCSSC
T ss_pred eEEEEEEcCCCC--EEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcH-HHcCCCCCCEEEEEEeCCCC
Confidence 599999999996 7889999999999999999999 9999999999999999999999 99999999999999987655
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=130.11 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=65.7
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhc-c-CCC-CCceEEEeCCeeCCCCCCcccCC--CCCCCCeEEEE
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLS-L-DQS-LSSLYFTLNGKILDESTPLFKNP--QIAPLSTLYLR 76 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~-~-gi~-~~~q~Li~~Gk~L~D~~tL~~~~--~I~~~sTL~L~ 76 (371)
..||||||+++|...+++|+|++++||.+||++|++ . |+| +++|||+|+|++|+|+.+| ++| +|++++||||+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL-~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL-KDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBT-HHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCH-HHHhcCCCCCCEEEeC
Confidence 459999999999755678999999999999999998 4 665 5999999999999999999 999 99999999984
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.62 E-value=9e-16 Score=134.24 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEE-e-CCeeCCCCCCcccCCCCCCCCeEEEEee-ec
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFT-L-NGKILDESTPLFKNPQIAPLSTLYLRQR-VF 80 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li-~-~Gk~L~D~~tL~~~~~I~~~sTL~L~lr-L~ 80 (371)
||||||+++|+ +++++|++++||.+||++|++. |+|+++|+|+ | +|++|+|+.+| ++|+|.+++||+|.++ +.
T Consensus 3 m~i~vk~~~g~--~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL-~~y~i~~~~~l~l~~~~~~ 79 (159)
T 3rt3_B 3 WDLTVKMLAGN--EFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPL-ASQGLGPGSTVLLVVDKSD 79 (159)
T ss_dssp CEEEEEETTSC--EEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCG-GGGTCCTTCEEEEEECCCC
T ss_pred eEEEEEECCCC--EEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCH-HHcCCCCCCEEEEEccCCC
Confidence 99999999997 7889999999999999999999 9999999999 9 89999999999 9999999999999999 45
Q ss_pred C
Q 017480 81 G 81 (371)
Q Consensus 81 G 81 (371)
|
T Consensus 80 ~ 80 (159)
T 3rt3_B 80 E 80 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 64
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=125.02 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=70.5
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+. |. +++|+|++++||.+||++|+.. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||+|.+|+++
T Consensus 24 ~~m~I~Vk~~-g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL-~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 24 KIMKVTVKTP-KE--KEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTL-SQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCEEEEEECS-SC--EEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCT-GGGTCCTTCEEEEEECCSS
T ss_pred CeEEEEEEeC-Cc--EEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcH-HHcCCCCCCEEEEEEcCCC
Confidence 4699999998 75 6889999999999999999999 9999999999999999999999 9999999999999999875
No 65
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.58 E-value=4e-15 Score=127.87 Aligned_cols=75 Identities=27% Similarity=0.373 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
||||||+.+|+ ++++++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| .+|+|.+++||||..++.|+
T Consensus 1 M~i~vk~~~g~--~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL-~~~~i~~~~~l~l~~~~~~~ 76 (152)
T 3b08_A 1 MQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp CEEEEEETTSC--EEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT-GGGTCCTTCEEEEEECCTTC
T ss_pred CEEEEEeCCCC--EEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccH-HHhccCCCCeeEEEeecccc
Confidence 99999999996 7789999999999999999999 9999999999999999999999 99999999999999998764
No 66
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.58 E-value=4.7e-15 Score=123.66 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=69.4
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCC-CCCCeEEEEee
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQI-APLSTLYLRQR 78 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I-~~~sTL~L~lr 78 (371)
.|+|||+...++..+++|+|++++||++||++|++. |||+++|||+|+|+.|+|+.|| ++||| ++|+||||.+-
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL-~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETL-HSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBT-GGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcH-HHcCCCCCCCEEEEEEE
Confidence 499999999986568999999999999999999999 9999999999999999999999 99999 69999999873
No 67
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=1e-14 Score=117.66 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=70.0
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCC-CCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDES-TPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~-~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..||||||+.+|+ ++.++|++++||.+||++|+... +++|+|+|+|++|+|+ .+| .+|+|.++++|||+++..+
T Consensus 6 ~~m~i~Vk~~~g~--~~~~~v~~~~TV~~LK~~i~~~~--~~~qrLi~~Gk~L~D~~~tL-~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDT--EELAVARPEDTVGTLKSKYFPGQ--ESQMKLIYQGRLLQDPARTL-SSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTE--EEEEEECSSSBHHHHHHHHSSST--TTTCEEEETTEECCCSSCBT-TTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHhhC--cCcEEEEECCEEccCCcCCH-HHcCCCCCCEEEEEECCCC
Confidence 4699999999996 67899999999999999999876 8999999999999999 999 9999999999999999876
Q ss_pred CCC
Q 017480 82 GGG 84 (371)
Q Consensus 82 ~~~ 84 (371)
...
T Consensus 81 ~~~ 83 (95)
T 1wia_A 81 AAV 83 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 68
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8e-15 Score=118.05 Aligned_cols=71 Identities=15% Similarity=0.197 Sum_probs=65.0
Q ss_pred ceEEEEEcCCCCeeeEEE-EcCCCCCHHHHHHHHhc-c-CCCCCceEEEeC--CeeCCCCCCcccCCCCCCCCeEEE
Q 017480 4 KTQIFIKSPSNSLTTLTV-GANQFETLNHLKRSLLS-L-DQSLSSLYFTLN--GKILDESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l-~v~~~~TV~~lK~~i~~-~-gi~~~~q~Li~~--Gk~L~D~~tL~~~~~I~~~sTL~L 75 (371)
.||||||++.|+....+| +|++++||.+||++|++ . |+|+++|||+|. |++|+|+.+| ++|+|.+++||++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL-~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVL-QKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBT-TTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCH-HHcCCCCCCEEEE
Confidence 499999999987554578 99999999999999999 5 899999999987 9999999999 9999999999876
No 69
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=6.7e-15 Score=121.13 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
|+|+||+ .|+ ++.|+|++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|||.+++||+|+.+
T Consensus 29 i~I~Vk~-~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL-~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQD--KWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV-ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSC--CCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT-TTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCE--EEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH-HHCCCCCCCEEEEEeC
Confidence 7899998 775 6788999999999999999999 9999999999999999999999 9999999999999764
No 70
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.52 E-value=2e-14 Score=140.04 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=69.7
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
...||||||+++|+ +++|+|++++||.+||++|++. |||+++|+|+|+|++|+|+.+| ++|+|.+++||||++|||
T Consensus 231 ~~~MqI~VKtl~Gk--~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TL-sdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGK--TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-SDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSC--EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBT-GGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCC--EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCH-HHcCCCCCCEEEEEEeCC
Confidence 45799999999997 7789999999999999999999 9999999999999999999999 999999999999999986
No 71
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.52 E-value=3.1e-14 Score=116.14 Aligned_cols=79 Identities=14% Similarity=0.235 Sum_probs=74.2
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..|||+||+++|+ ++.+.|..++++..|+..++++ |++++++||+|+|++|+++.|+ .+|+++++++||+.++++|
T Consensus 6 ~~i~ikVk~~~g~--~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp-~dl~medgD~Idv~~~~~G 82 (94)
T 2io1_B 6 DHINLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVFQQQTG 82 (94)
T ss_dssp CEEEEEEECTTSC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCT-TTTTCCTTCEEEEEECCEE
T ss_pred CeEEEEEECCCCC--EEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEEeccC
Confidence 4599999999997 6778888899999999999999 9999999999999999999999 9999999999999999999
Q ss_pred CCC
Q 017480 82 GGG 84 (371)
Q Consensus 82 ~~~ 84 (371)
|++
T Consensus 83 G~~ 85 (94)
T 2io1_B 83 GVP 85 (94)
T ss_dssp SCC
T ss_pred CCc
Confidence 854
No 72
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=9.9e-15 Score=120.59 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=67.8
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe--CCeeCCCCCCcccCCCCCCCCeEEEEee-
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL--NGKILDESTPLFKNPQIAPLSTLYLRQR- 78 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~--~Gk~L~D~~tL~~~~~I~~~sTL~L~lr- 78 (371)
..||+|++...|+ +++|++++++||++||++|+++ |||+++|+|+| +|+ |+|+.+| .+|+|++++||||+++
T Consensus 7 ~~m~~~~vk~~Gk--~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tL-s~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 7 GRMLDFRVEYRDR--NVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVL-KSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CCEEEEEEECSSC--EEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBH-HHHCCCSEEEEEECCSS
T ss_pred cceEEEEEEeCCe--EEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCH-HHcCCCCCCEEEEEecC
Confidence 3599999999997 7788898999999999999999 99999999997 676 9999999 9999999999999887
Q ss_pred ec
Q 017480 79 VF 80 (371)
Q Consensus 79 L~ 80 (371)
+-
T Consensus 83 ~~ 84 (100)
T 2dzm_A 83 LP 84 (100)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 73
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.50 E-value=2.2e-14 Score=115.29 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=65.3
Q ss_pred cceEEEEEcCCCCeeeEEE-EcCCCCCHHHHHHHHhcc-CCCCCceEEE---eCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 3 SKTQIFIKSPSNSLTTLTV-GANQFETLNHLKRSLLSL-DQSLSSLYFT---LNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l-~v~~~~TV~~lK~~i~~~-gi~~~~q~Li---~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
..|||+||. .|+ +++| ++++++||.+||++|++. |||+++|+|+ |.|++|+|+.+| .+|+|.++++|+|.
T Consensus 6 ~~m~i~Vk~-~g~--~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L-~~~~i~~g~~l~l~ 80 (90)
T 1v5t_A 6 SGLPIIVKW-GGQ--EYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKL-GALKLKPNTKIMMM 80 (90)
T ss_dssp CSCCEEEEE-TTE--EEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBH-HHHTCCTTEEEEEE
T ss_pred ceEEEEEEE-CCE--EEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCH-HHcCCCCCCEEEEE
Confidence 469999996 665 7889 999999999999999999 9999999999 999999999999 99999999999885
No 74
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=2.1e-14 Score=117.05 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=63.2
Q ss_pred cceEEEEEcCCCCeeeE-EEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 3 SKTQIFIKSPSNSLTTL-TVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~-~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
..|||+||. .|+ ++ .|++++++||.+||++|++. |||+++|+|+|.|++|+|+ +| .+|+|.++++|+|+
T Consensus 6 ~~m~i~Vk~-~g~--~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL-~~~~I~~g~~i~l~ 76 (96)
T 1wgg_A 6 SGYSVTVKW-GKE--KFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DW-GNIKMKNGMTVLMM 76 (96)
T ss_dssp CEEEEEEEE-TTE--EEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CC-CSCCCCSSCEEECC
T ss_pred cEEEEEEEE-CCE--EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CH-HHCCCCCCCEEEEE
Confidence 469999996 564 77 58898999999999999999 9999999999999999999 99 99999999999883
No 75
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=7.2e-14 Score=112.04 Aligned_cols=73 Identities=19% Similarity=0.192 Sum_probs=64.9
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCC-----CCHHHHHHHHhcc-CCCCCceEEEeCCeeCCC-CCCcccCCCCCCCCeEE
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQF-----ETLNHLKRSLLSL-DQSLSSLYFTLNGKILDE-STPLFKNPQIAPLSTLY 74 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~-----~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D-~~tL~~~~~I~~~sTL~ 74 (371)
...|+|+||+ .|+ +++|+++++ +||.+||++|++. |+|+++|+|+|.|++|.| +.+| .+|+|.++++||
T Consensus 5 ~~~~~v~Vk~-~~~--~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L-~~~~i~~g~~i~ 80 (92)
T 1wxv_A 5 SSGLTVTVTH-SNE--KHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPL-SALGIQDGCRVM 80 (92)
T ss_dssp CSSEEEEEEC-SSS--EEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBH-HHHTCCSSEEEE
T ss_pred CCeEEEEEEE-CCE--EEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccH-HHCCCCCCCEEE
Confidence 4579999999 465 567888875 9999999999999 999999999999999988 6689 999999999999
Q ss_pred EEee
Q 017480 75 LRQR 78 (371)
Q Consensus 75 L~lr 78 (371)
|+.+
T Consensus 81 l~~~ 84 (92)
T 1wxv_A 81 LIGK 84 (92)
T ss_dssp EESC
T ss_pred EEec
Confidence 9764
No 76
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=1.3e-13 Score=114.23 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=66.7
Q ss_pred ceEEEEEcCCC---CeeeEEEE--------cCCC-CCHHHHHHHHhcc---CCCCCc-eEEEeCCeeCCCCCCcccCCCC
Q 017480 4 KTQIFIKSPSN---SLTTLTVG--------ANQF-ETLNHLKRSLLSL---DQSLSS-LYFTLNGKILDESTPLFKNPQI 67 (371)
Q Consensus 4 ~MQIFVk~~~g---~~~t~~l~--------v~~~-~TV~~lK~~i~~~---gi~~~~-q~Li~~Gk~L~D~~tL~~~~~I 67 (371)
.|||+||+.++ . +++|+ |+++ +||.+||++|+.. |+|+++ |+|+|+|++|+|+.+| .+|+|
T Consensus 12 ~~~i~Vk~~~~~~~~--~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL-~~y~i 88 (107)
T 1x1m_A 12 DWHLAVKLADQPLAP--KSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTL-DFYGI 88 (107)
T ss_dssp SCCEEEEETTCTTSC--CEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBH-HHHTC
T ss_pred ceEEEEEeCCCCCcc--EEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcH-HHcCC
Confidence 49999999988 5 56777 5554 9999999999976 699999 9999999999999999 99999
Q ss_pred CCCCeEEEEeeecC
Q 017480 68 APLSTLYLRQRVFG 81 (371)
Q Consensus 68 ~~~sTL~L~lrL~G 81 (371)
.+++||||++|...
T Consensus 89 ~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 89 QPGSTVHVLRKSWS 102 (107)
T ss_dssp CTTCEEEEEESSCC
T ss_pred CCCCEEEEEeCCCC
Confidence 99999999998754
No 77
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.44 E-value=1.9e-13 Score=108.72 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=62.9
Q ss_pred EEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 7 IFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 7 IFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
+|+++.+|+ ++.+++++++||.+||++|++. |+|+++|+|+|+|++|+|+.+| ++|+|.++++|+|..
T Consensus 14 ~~~~~~~g~--~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL-~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 14 KLTVKFGGK--SIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTL-KQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEEEEETTE--EEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBT-TTTTCCTTEEEEEEC
T ss_pred EEEEEECCE--EEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCH-HHCCCCCCCEEEEEE
Confidence 567777886 7789999999999999999999 9999999999999999999999 999999999999864
No 78
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.43 E-value=1.7e-13 Score=136.57 Aligned_cols=79 Identities=20% Similarity=0.306 Sum_probs=73.6
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhc---c-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeE-EEEe
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLS---L-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTL-YLRQ 77 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~---~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL-~L~l 77 (371)
..|+||||+++|+ +++|+|++++||.+||.+|+. + |||+++|+|+|+|+.|+|+.+| .+|+|.++++| +|++
T Consensus 6 ~~M~I~VKtl~Gk--~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL-~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 6 SAVTITLKTLQQQ--TFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI-RDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCCCEEEEETTTE--EEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBT-TTTCCCTTSCEEEEEE
T ss_pred ceEEEEEEeCCCC--EEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCH-HHcCCCCCCEEEEEEe
Confidence 4699999999996 788999999999999999999 6 7999999999999999999999 99999999999 8999
Q ss_pred eecCCCC
Q 017480 78 RVFGGGG 84 (371)
Q Consensus 78 rL~G~~~ 84 (371)
|++|+..
T Consensus 83 k~~~~~~ 89 (368)
T 1oqy_A 83 KTKAGQG 89 (368)
T ss_dssp CCCSSSC
T ss_pred cCCCCCC
Confidence 9998754
No 79
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=6.4e-13 Score=107.81 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=73.4
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.|+|+||+++|+ .+.+.|..++++..|+..++++ |++++++||+|+|++|.++.|. +++++.++++|++.++++||
T Consensus 5 ~i~ikVk~~~g~--~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp-~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 5 HINLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEEECTTSC--EEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCT-TTTTCCTTEEEEEEECCCCC
T ss_pred eEEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEEeccCC
Confidence 499999999997 6778888899999999999999 9999999999999999999999 99999999999999999998
Q ss_pred CC
Q 017480 83 GG 84 (371)
Q Consensus 83 ~~ 84 (371)
++
T Consensus 82 ~~ 83 (91)
T 2io0_B 82 VY 83 (91)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 80
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.40 E-value=1.8e-13 Score=113.55 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=64.8
Q ss_pred cceEEEEEcCCCCeeeEEEEcC-CCCCHHHHHHHHhcc-CCCCCceEEEeCCe-----------e----CCCCCCcccCC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGAN-QFETLNHLKRSLLSL-DQSLSSLYFTLNGK-----------I----LDESTPLFKNP 65 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~-~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk-----------~----L~D~~tL~~~~ 65 (371)
+.|+|+||+.+|. ..|+|+ +++||.+||++|++. |||+++|+|+|.|+ + ++|+.+| ++|
T Consensus 6 ~~M~irvrs~~G~---~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL-~~~ 81 (107)
T 1wf9_A 6 SGTMLRVRSRDGL---ERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRI-SSL 81 (107)
T ss_dssp CCEEEEEECSSCE---EEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBG-GGT
T ss_pred CeEEEEEECCCCC---EEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCH-HHC
Confidence 3499999999995 468888 899999999999999 99999999999999 4 5889999 999
Q ss_pred CCCCCCeEEEEee
Q 017480 66 QIAPLSTLYLRQR 78 (371)
Q Consensus 66 ~I~~~sTL~L~lr 78 (371)
||.++++|||...
T Consensus 82 gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 82 NLAHGSMVYLAYE 94 (107)
T ss_dssp CCCTTCEEECCCS
T ss_pred CCCCCCEEEEEeC
Confidence 9999999998654
No 81
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=1.2e-13 Score=112.21 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=62.7
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
..|+|+||. .++ ++.|++++++||.+||++|++. |||+++|+|+|.|++|+| .+| .+|+|.++++|+|+.
T Consensus 16 ~~~~i~Vk~-~g~--~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL-~~~~i~~g~~i~lv~ 86 (95)
T 1v86_A 16 ELVDLKIIW-NKT--KHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTL-REIKVTSGAKIMVVG 86 (95)
T ss_dssp CCEEEEEEE-TTE--EEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBH-HHHCCCTTEEEEECC
T ss_pred ceEEEEEEE-CCE--EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcH-HHCCCCCCCEEEEEe
Confidence 359999994 564 7889999999999999999999 999999999999999954 599 999999999999853
No 82
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.39 E-value=4.9e-13 Score=109.22 Aligned_cols=72 Identities=13% Similarity=0.070 Sum_probs=64.1
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeC--Ce---eC-CCCCCcccCCCCCCCCeEEEE
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLN--GK---IL-DESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~--Gk---~L-~D~~tL~~~~~I~~~sTL~L~ 76 (371)
.+.|+|++..+.-+++++++++++||++||++|+.. |||+++|||+|. |+ +| +|+.+| ++|+|++++||+|+
T Consensus 15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL-~~Y~i~~gstihlv 93 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQL-GYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBH-HHHCCSSSCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCH-hHCCcCCCCEEEEE
Confidence 478999987775457888899999999999999999 999999999998 45 56 899999 99999999999985
No 83
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.4e-12 Score=108.44 Aligned_cols=81 Identities=14% Similarity=0.248 Sum_probs=75.6
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..|+|+|++++|. .+.+.|..++++..|+..++++ |++++++||+|+|++|.++.|+ .+|++..+++||+.++++|
T Consensus 23 ~~I~IkVk~~~g~--~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp-~dl~medgD~Idv~~~q~G 99 (104)
T 1wz0_A 23 DHINLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVFQQQTS 99 (104)
T ss_dssp CCEEEEEECSSSC--EEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCT-TTTTCCTTEEEEECCCCCC
T ss_pred CeEEEEEECCCCC--EEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEEeccC
Confidence 3699999999996 6788888899999999999999 9999999999999999999999 9999999999999999999
Q ss_pred CCCCC
Q 017480 82 GGGDG 86 (371)
Q Consensus 82 ~~~~~ 86 (371)
|+..|
T Consensus 100 G~~~~ 104 (104)
T 1wz0_A 100 GPSSG 104 (104)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87654
No 84
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.33 E-value=3.6e-12 Score=103.57 Aligned_cols=77 Identities=14% Similarity=0.262 Sum_probs=69.7
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..|+|+|++++|. .+.+.|..++++..|+..++++ |++++++||+|+|++|.++.|+ .+|++..+++||+.++++|
T Consensus 16 ~~i~ikV~~~~g~--~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp-~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 16 DHINLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp CEEEEEEECTTSC--EEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCT-TTTTCCTTEEEEEEECC--
T ss_pred CeEEEEEECCCCC--EEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCH-HHcCCCCCCEEEEEeeccC
Confidence 3599999999996 6678888899999999999999 9999999999999999999999 9999999999999999999
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 93 G 93 (93)
T 2d07_B 93 G 93 (93)
T ss_dssp -
T ss_pred C
Confidence 7
No 85
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3.2e-12 Score=108.31 Aligned_cols=74 Identities=19% Similarity=0.199 Sum_probs=66.9
Q ss_pred cceEEEEE-cCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeee
Q 017480 3 SKTQIFIK-SPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 3 ~~MQIFVk-~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL 79 (371)
+.|.|.|+ ...++ .++++++++.||.+||+.|+.. ++|+++|+|+|+||.|.|+.|| .+|||.++.||||+++=
T Consensus 14 ~~itvkv~l~~~~~--k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL-~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 14 SLATVKVVLIPVGQ--EIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETL-VQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp SCEEEEEEETTTCC--EEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCH-HHHSCCSSCEEEEEEEE
T ss_pred ccEEEEEEEcCCCc--EEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchH-HHcCCCCCCEEEEEEec
Confidence 34788888 66675 5788888899999999999999 9999999999999999999999 99999999999999874
No 86
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.30 E-value=5e-12 Score=101.34 Aligned_cols=71 Identities=8% Similarity=0.073 Sum_probs=59.2
Q ss_pred EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe-------CCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL-------NGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~-------~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
-|.|-.-....+.+.+.+++++||.+||++|+.. |||+++|||+| .|+.|+|+.+| ++|+|++++||||+-
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL-~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQL-GYYQCRDEFVIHVVD 82 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBG-GGGTCCTTCEEEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCH-HHCCCCCCCEEEEEe
Confidence 3455432222245677788899999999999999 99999999996 69999999999 999999999999974
No 87
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.30 E-value=2.5e-12 Score=105.46 Aligned_cols=71 Identities=17% Similarity=0.107 Sum_probs=62.2
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCe---e---C-CCCCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGK---I---L-DESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk---~---L-~D~~tL~~~~~I~~~sTL~L~ 76 (371)
.-|+|+.-......+++++++++||++||++|+.. |||+++|||+|.|+ + | +|+.+| ++|+|++++||||+
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL-~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPL-GFFSPFDGFRLHII 93 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCH-HHHCCCSCCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCH-HHCCCCCCCEEEEE
Confidence 56888875554356889999999999999999999 99999999999984 3 4 889999 99999999999985
No 88
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.26 E-value=1.2e-11 Score=104.83 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=65.6
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC---e---eC-CCCCCcccCCCCCCCCe
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG---K---IL-DESTPLFKNPQIAPLST 72 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G---k---~L-~D~~tL~~~~~I~~~sT 72 (371)
|-..+.|+|+.-.+. ..+++++++++||++||++|+.. |||+++|||+|.| + +| +|+.+| ++|||++++|
T Consensus 3 m~~~v~l~V~~~~~~-~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL-~~y~i~~g~~ 80 (122)
T 1t0y_A 3 MTEVYDLEITTNATD-FPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSL-KDLGVRDGYR 80 (122)
T ss_dssp CCCEEEEEEEESSCC-SCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBT-TTTTCCSSEE
T ss_pred CCCEEEEEEEECCCC-ccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCH-HHCCCCCCCE
Confidence 667799999986653 35788888899999999999999 9999999999987 4 44 789999 9999999999
Q ss_pred EEEEe
Q 017480 73 LYLRQ 77 (371)
Q Consensus 73 L~L~l 77 (371)
|||..
T Consensus 81 ihvvd 85 (122)
T 1t0y_A 81 IHAVD 85 (122)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99875
No 89
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=1e-11 Score=100.56 Aligned_cols=70 Identities=20% Similarity=0.150 Sum_probs=61.8
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC---ee----CCCCCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG---KI----LDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G---k~----L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
+-|+|+.-... ..+++++++++||++||++|+.. |||+++|||+|.| ++ |+|+.+| ++|+|++++||||.
T Consensus 8 v~l~I~~~~~~-~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL-~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 8 VMVFISSSLNS-FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALL-GSYPVDDGCRIHVI 85 (95)
T ss_dssp EEEEEEETTSS-SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBT-TSSSCCTTCEEEEB
T ss_pred EEEEEEECCCC-eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCH-hHCCCCCCCEEEEE
Confidence 67899986553 35789999999999999999999 9999999999987 54 4899999 99999999999985
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.24 E-value=6.7e-12 Score=99.76 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCeeeEEEE-cCCCCCHHHHHHHHhcc-CCCCCceEEEeC--CeeCC---CCCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVG-ANQFETLNHLKRSLLSL-DQSLSSLYFTLN--GKILD---ESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~-v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~--Gk~L~---D~~tL~~~~~I~~~sTL~L~ 76 (371)
|+|+||+.+|+ ..++ +++++||.+||++|++. |||+++|+|+|+ |++|+ |+.+| .+|||.++++|+|.
T Consensus 1 m~i~vr~~~G~---~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL-~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 1 WRVRCKAKGGT---HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITL-GDLPIQSGDMLIVE 75 (86)
T ss_dssp CCEEEEETTEE---EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBT-TTSSCCTTCEEECC
T ss_pred CEEEEEcCCCC---EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCH-HHcCCCCCCEEEEE
Confidence 89999999995 3477 88899999999999999 999999999998 48884 68899 99999999999885
No 91
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.23 E-value=2e-11 Score=101.78 Aligned_cols=76 Identities=12% Similarity=0.228 Sum_probs=68.4
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
..|+|+|++ +|. .+.+.+..++++..|+..++++ |++++++||+|+|++|.++.|. .++++..+++|++.++++|
T Consensus 30 ~~I~IkV~~-~g~--~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp-~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 30 THINLKVSD-GSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp SEEEEEEEC-SSC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCT-TTTTCCTTEEEEEEECC--
T ss_pred CeEEEEEec-CCc--EEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCH-HHcCCCCCCEEEEEeeccc
Confidence 359999999 996 6677788899999999999999 9999999999999999999999 9999999999999999998
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 106 G 106 (106)
T 2eke_C 106 G 106 (106)
T ss_dssp -
T ss_pred C
Confidence 7
No 92
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.21 E-value=1.2e-11 Score=103.87 Aligned_cols=78 Identities=13% Similarity=0.119 Sum_probs=72.5
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.|+|+|++++|. .+.+.|..++++..|+..++++ |++++++||+|.|++|.++.|+ .+|++.++++|++.++++||
T Consensus 26 ~I~IkVk~~~g~--~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp-~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 26 LVAVKVVNADGA--EMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTP-EELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CEEEEEEETTSC--CEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHH-HHHHCSSEEEEEEECCCCCC
T ss_pred eEEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEEcccCc
Confidence 599999999997 6788888899999999999999 9999999999999999999999 99999999999999999997
Q ss_pred CC
Q 017480 83 GG 84 (371)
Q Consensus 83 ~~ 84 (371)
-.
T Consensus 103 ~~ 104 (110)
T 2k8h_A 103 LE 104 (110)
T ss_dssp --
T ss_pred cc
Confidence 54
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.18 E-value=8.1e-11 Score=90.85 Aligned_cols=70 Identities=11% Similarity=0.221 Sum_probs=66.1
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
.|+|+|++++|+ .+.+.+..++++..|+..++++ |++++++||+|+|++|.++.|. +++++.++++|++.
T Consensus 1 ~i~lkV~~~~g~--~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp-~~l~medgD~Idv~ 71 (72)
T 1wm3_A 1 HINLKVAGQDGS--VVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP-AQLEMEDEDTIDVF 71 (72)
T ss_dssp CEEEEEECTTSC--EEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCT-TTTTCCTTEEEEEE
T ss_pred CEEEEEECCCCC--EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCH-HHcCCCCCCEEEEE
Confidence 389999999997 7788888899999999999999 9999999999999999999999 99999999999985
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.04 E-value=6e-10 Score=87.66 Aligned_cols=72 Identities=11% Similarity=0.083 Sum_probs=65.9
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
..|+|+|++++|+ ..+.+.+..++++..|+..++++ |++++++||+|+|++|.++.|. .++++.++++||+.
T Consensus 6 ~~i~ikV~~~~g~-~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp-~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKEKH-QMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELP-ADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSSTT-CEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCH-HHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCCCC-EEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCH-HHcCCCCCCEEEEe
Confidence 4599999999994 25678888899999999999999 9999999999999999999999 99999999999974
No 95
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.01 E-value=2.4e-10 Score=111.86 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=62.7
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEE---eCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFT---LNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li---~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
+.|.|.||. .|+ +++|++++++||++||++|+++ |||+++|+|+ |.|++|.|+.+| ++|+|++++||+|+
T Consensus 4 ~~i~i~Vk~-~g~--~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L-~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 4 KEVVVIVKW-SGK--EYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKI-SALELKPNFKLMMV 77 (320)
T ss_dssp CEEEEEEEE-TTE--EEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBT-TSSCCC--CEEEEE
T ss_pred ceEEEEEEE-CCE--EEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccH-HHcCCCCCCEEEEE
Confidence 358999996 675 7889999999999999999999 9999999999 899999999999 99999999999885
No 96
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.89 E-value=4.8e-09 Score=96.46 Aligned_cols=79 Identities=14% Similarity=0.271 Sum_probs=72.6
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.++|+|+ ++|. .+.+.+..++++..|+...+++ |++++++||+|+|++|.++.|. .++++.++++|++.++++||
T Consensus 29 ~I~LkV~-~~g~--~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP-~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 29 HINLKVS-DGSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CEEEEEE-CSSC--EEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCT-TTTTCCTTEEEEEEECCSCC
T ss_pred eEEEEEe-cCCC--EEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCH-HHcCCCCCCEEEEEeccCcC
Confidence 4899998 5886 6778888899999999999999 9999999999999999999999 99999999999999999999
Q ss_pred CCCC
Q 017480 83 GGDG 86 (371)
Q Consensus 83 ~~~~ 86 (371)
+.+|
T Consensus 105 ~kd~ 108 (200)
T 3pge_A 105 GGET 108 (200)
T ss_dssp C-CC
T ss_pred cCce
Confidence 8776
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.66 E-value=8.5e-08 Score=81.00 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=68.9
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
.++|.|++++|. .+.+.+..++++..|+...+++ |++++++||+|+|.+|.++.|. .++++.++++|++.++-.|
T Consensus 40 ~I~LKV~~qdg~--ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP-~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 40 YIKLKVIGQDSS--EIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP-KELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEEECTTSC--EEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCT-TTTTCCTTCEEEEEECCCC
T ss_pred eEEEEEEcCCCC--EEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCH-HHcCCCCCCEEEEEeeccC
Confidence 589999999997 4667777889999999999999 9999999999999999999999 9999999999999987665
No 98
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.63 E-value=8.7e-08 Score=77.49 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=58.4
Q ss_pred eEEEEEc---CCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC-------eeC-CCCCCcccCCCCCCCCe
Q 017480 5 TQIFIKS---PSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG-------KIL-DESTPLFKNPQIAPLST 72 (371)
Q Consensus 5 MQIFVk~---~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G-------k~L-~D~~tL~~~~~I~~~sT 72 (371)
+.|+|+. .+|. .+.+.+..+.||++||.+|+.. |+|+..|+|.|.+ .+| +|+.+| +.|+|.++++
T Consensus 10 v~l~I~~~~~~~~~--~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L-~~y~i~~G~~ 86 (97)
T 1wjn_A 10 LTLKIKCSNQPERQ--ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPL-QFYSVENGDC 86 (97)
T ss_dssp EEEEEEESSCSSSC--CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBS-GGGTCCTTCE
T ss_pred EEEEEEecCCCCCc--EEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccH-hhcCCCCCCE
Confidence 5788885 4554 5567777788999999999999 9999999999873 336 577889 9999999999
Q ss_pred EEEEe
Q 017480 73 LYLRQ 77 (371)
Q Consensus 73 L~L~l 77 (371)
|||..
T Consensus 87 I~V~d 91 (97)
T 1wjn_A 87 LLVRW 91 (97)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99875
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.55 E-value=8.2e-08 Score=87.74 Aligned_cols=77 Identities=12% Similarity=0.186 Sum_probs=71.0
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.++|+|+ ++|. .+.+.|..++++..|+...+++ |+++.+++|+|+|++|.++.|. .++++.++++|++.++++||
T Consensus 57 ~InLKVk-~dG~--eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTP-eDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 57 HINLKVS-DGSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTP-EDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEEE-CSSC--EEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCT-TTTTCCTTEEEEECCCCCTT
T ss_pred cEEEEEe-cCCC--EEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCH-HHcCCCCCCEEEEEEeccCC
Confidence 4899997 5886 5677788899999999999999 9999999999999999999999 99999999999999999999
Q ss_pred CC
Q 017480 83 GG 84 (371)
Q Consensus 83 ~~ 84 (371)
+.
T Consensus 133 ~~ 134 (207)
T 3tix_A 133 LP 134 (207)
T ss_dssp GG
T ss_pred Cc
Confidence 75
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.43 E-value=3e-08 Score=91.70 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=1.3
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.|+|+| +++|. .+.+.+..++++..|+...+++ |++++++||+|+|++|.++.|. .++++.++++|++.++.+||
T Consensus 21 ~InLKV-~qdGs--eV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTP-adL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 21 HINLKV-SDGSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred eEEEEE-eCCCC--EEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCH-HHcCCCCCCEEEEEecccCC
Confidence 589999 89996 6677888899999999999999 9999999999999999999999 99999999999999999998
Q ss_pred C
Q 017480 83 G 83 (371)
Q Consensus 83 ~ 83 (371)
+
T Consensus 97 ~ 97 (227)
T 3v7o_A 97 L 97 (227)
T ss_dssp C
T ss_pred c
Confidence 4
No 101
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.43 E-value=2.1e-07 Score=77.36 Aligned_cols=114 Identities=18% Similarity=0.343 Sum_probs=89.3
Q ss_pred ccccCCCCCCCCCe------eeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCCCCCCceeEcCC
Q 017480 120 CNCALSNEPLREPC------VIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPI 193 (371)
Q Consensus 120 ~~CaLS~~PL~~PI------V~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~~~~~~~~~CPV 193 (371)
..|++.++.+.+|+ |.-.=|+.|-++-|.+||..+..=|.....-..+++..+.+. ...+.|||
T Consensus 8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~----------~~~~~C~i 77 (133)
T 4ap4_A 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG----------SGTVSCPI 77 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS----------SSSCBCTT
T ss_pred CCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC----------CCCCCCCC
Confidence 56999999998882 566889999999999999876544555566666777775442 23457999
Q ss_pred cccccCCc---eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEec
Q 017480 194 TGLEFNGK---YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 194 T~~e~ng~---~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Ln 243 (371)
+...|... .+.+.+-+|||+|...++.+. ....||+|..++..+|++++.
T Consensus 78 C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 78 CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp TCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 99888642 345567799999999999986 367999999999999998873
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.39 E-value=2e-07 Score=73.51 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=61.8
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCee-----CCCCCCcccCCCCCCCCeEE
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKI-----LDESTPLFKNPQIAPLSTLY 74 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~-----L~D~~tL~~~~~I~~~sTL~ 74 (371)
|.+.|-|=||+.+| +..|++++++||.+|+.+|++. +++.+.|.|.++-.| +.++.+| ++.||..|++|+
T Consensus 1 ~~~~m~lRvrs~~G---~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l-~~lgl~hGd~l~ 76 (80)
T 2pjh_A 1 MAESIIIRVQSPDG---VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSL-HLLKIKHGDLLF 76 (80)
T ss_dssp -CCCCCCEEECSSE---EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTT-TTTCCCTTCCEE
T ss_pred CCCcEEEEEECCCC---CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCH-HHcCCCCCCEEE
Confidence 77889999999999 5788999999999999999998 999888888766665 4578899 999999999998
Q ss_pred EE
Q 017480 75 LR 76 (371)
Q Consensus 75 L~ 76 (371)
|.
T Consensus 77 l~ 78 (80)
T 2pjh_A 77 LF 78 (80)
T ss_dssp C-
T ss_pred Ee
Confidence 75
No 103
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.27 E-value=5.8e-07 Score=67.32 Aligned_cols=56 Identities=21% Similarity=0.261 Sum_probs=49.9
Q ss_pred ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeee
Q 017480 120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLS 175 (371)
Q Consensus 120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt 175 (371)
..|+||++++.+||++-..|+.|++++|.+||......+..+...+.+||+++++.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 67999999999996664789999999999999977667888999999999999875
No 104
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.23 E-value=8.8e-07 Score=66.33 Aligned_cols=55 Identities=13% Similarity=0.176 Sum_probs=46.8
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGN 245 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~ 245 (371)
.|+||||+..|.+- |...+|||||..+++.+. ....||+++++++..|+|+++-.
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 58999999999863 555589999999999997 35679999999999999999854
No 105
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.13 E-value=1.5e-06 Score=64.54 Aligned_cols=56 Identities=14% Similarity=0.324 Sum_probs=45.6
Q ss_pred eeEcCCccc-ccCCceeEEEEeccCccccHHHHHHh---hcCCCCCCCCCcCCCceEEec
Q 017480 188 RFQCPITGL-EFNGKYRFVAMRTCGHVLSTKALKEV---KSSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 188 ~~~CPVT~~-e~ng~~rfV~L~~CG~V~Se~alkev---k~~~CpvCg~~f~~~DiI~Ln 243 (371)
.+.|||+.. .+.+....+++.+|||+|+..++.++ ....||+|..++...|+++.-
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence 357999999 77665554556799999999999998 246799999999999987753
No 106
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.97 E-value=1.4e-05 Score=61.05 Aligned_cols=52 Identities=15% Similarity=0.258 Sum_probs=42.5
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~ 241 (371)
...|.|||+...|..- |.+ +|||+|+..++.+.- ...||+|+.++...++++
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred cccCCCCCccccccCC---EEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 3468999999999753 333 899999999999874 468999999999887665
No 107
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.89 E-value=7.8e-06 Score=59.69 Aligned_cols=55 Identities=22% Similarity=0.512 Sum_probs=46.0
Q ss_pred eeEcCCcccccCCc---eeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480 188 RFQCPITGLEFNGK---YRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 188 ~~~CPVT~~e~ng~---~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~L 242 (371)
.+.|||+...+... .+.+++.+|||+|...++.+.- ...||+|..++...|++.|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence 46799999988642 3556777999999999999873 5789999999999999876
No 108
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.86 E-value=1.7e-05 Score=64.66 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=36.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCC
Q 017480 17 TTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILD 56 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~ 56 (371)
..+.+.+.+++||..||++|++. |||+++|+|+|+|++|.
T Consensus 24 ~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 24 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred eEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 35678888899999999999999 99999999999999875
No 109
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.82 E-value=1.3e-05 Score=63.28 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=42.8
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~ 241 (371)
...|.||||+..|..- |. -+|||+|+..|+...- ...||+|+.++...|+++
T Consensus 12 p~~~~CpI~~~~m~dP---V~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VR-LPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred chheECcccCchhcCC---eE-CCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence 3469999999999862 33 4699999999999873 578999999999887665
No 110
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.78 E-value=2.2e-05 Score=63.79 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=51.2
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhhc-----CCCCCCCCCcCCCceEEecCChHHHHHHHHHHHH
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS-----SSCLVCHEEFGEMDKILINGNEEEISVLRERMEE 258 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~-----~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~ 258 (371)
.+.|||+...|..-.. -+|||+|+..|+...-. ..||+|..++...+++....-..-++.+.++++.
T Consensus 21 ~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (112)
T 1jm7_A 21 ILECPICLELIKEPVS----TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICA 92 (112)
T ss_dssp HTSCSSSCCCCSSCCB----CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHHH
T ss_pred CCCCcccChhhcCeEE----CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHHHHH
Confidence 5689999998865322 48999999999998743 3799999999988877655555566666666543
No 111
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.77 E-value=2.3e-05 Score=63.73 Aligned_cols=51 Identities=8% Similarity=-0.049 Sum_probs=42.4
Q ss_pred ceeEcCCcccccCCceeEEEEeccC-ccccHHHHHHhh--cCCCCCCCCCcCCCceEE
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCG-HVLSTKALKEVK--SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG-~V~Se~alkevk--~~~CpvCg~~f~~~DiI~ 241 (371)
..|.||||...|..- |. -+|| |+|+..||...- ...||+|+.++...|+++
T Consensus 21 ~~~~CpI~~~~m~dP---V~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDP---VV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp TTTBCTTTCSBCSSE---EE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred HhcCCcCccccccCC---eE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceE
Confidence 469999999999762 32 4899 999999999873 568999999999888764
No 112
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=97.74 E-value=2.3e-05 Score=64.03 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=48.5
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHHH
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEK 260 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~ 260 (371)
...|.||||+..|.. =|.+ +|||+|+..|+...- ...||+|+.++...|+++-. .|+..++.-.
T Consensus 27 p~~~~CpI~~~~m~d---PV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~-------~Lk~~I~~~~ 92 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVP-------ELKEQIQAWM 92 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECH-------HHHHHHHHHH
T ss_pred cHhhCCcCccCcccC---CeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECH-------HHHHHHHHHH
Confidence 346999999999976 2333 699999999999873 56899999999988876532 3555555444
No 113
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.72 E-value=1.3e-05 Score=59.90 Aligned_cols=57 Identities=21% Similarity=0.496 Sum_probs=47.0
Q ss_pred CceeEcCCcccccCCc---eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEe
Q 017480 186 GIRFQCPITGLEFNGK---YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~---~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~L 242 (371)
...+.|||+...|... .+.+++.+|||+|...++.++ ....||+|..++...|++.|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 4567899999988642 356677899999999999987 35799999999999888765
No 114
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.69 E-value=8.7e-05 Score=68.09 Aligned_cols=76 Identities=12% Similarity=0.224 Sum_probs=68.5
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.+.|.|++ ++. .+.+.+..++++..|+...+++ |++++++||+|.|+++.++.|. .+..+.++++|++....+||
T Consensus 21 ~i~ikv~~-~~~--~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tp-k~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 21 HINLKVSD-GSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp EEEEEEEC-SSC--EEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCT-TTTTCCTTEEEEEECSCTTC
T ss_pred cEEEEEEc-CCC--EEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCCh-HHhhhcccccchhhcccccc
Confidence 47899997 665 5567777789999999999999 9999999999999999999898 99999999999999999997
Q ss_pred C
Q 017480 83 G 83 (371)
Q Consensus 83 ~ 83 (371)
.
T Consensus 97 ~ 97 (209)
T 3uf8_A 97 S 97 (209)
T ss_dssp C
T ss_pred c
Confidence 5
No 115
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.67 E-value=0.00021 Score=56.40 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCC-ceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLS-SLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~-~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
-+-+.+|+.... -+.+.+..+.||.+|=.....+ |||++ ..+|.|.|.+|+++.++ ++|.+.++..|++.+
T Consensus 9 ~~~~~~~~~~~~--dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp-~DlemeD~D~IDvmL 81 (82)
T 3goe_A 9 LITLLLRSSKSE--DLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQV-QSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEEESSSC--CEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBG-GGSSCCTTCEEEEEC
T ss_pred HHHHhhhccCCC--CeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCCh-hhhCCcCCceeeeee
Confidence 356777776553 5677888899999998888888 99999 99999999999999999 999999999998875
No 116
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.66 E-value=2.9e-05 Score=59.37 Aligned_cols=59 Identities=15% Similarity=0.363 Sum_probs=47.1
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGN 245 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~ 245 (371)
...+.|||+...|.....++ +.+|||+|...++.++ ....||+|..++...++++..|.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~-~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 73 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVR-QLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNPPG 73 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEE-ECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCCSS
T ss_pred CCCCCCeeCCccccCCCCEE-EeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCCCC
Confidence 45678999999997655443 4489999999999987 35789999999999887765543
No 117
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=4.6e-05 Score=57.58 Aligned_cols=54 Identities=13% Similarity=0.173 Sum_probs=44.6
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~L 242 (371)
...+.|||+...|.. -+.+.+|||+|+..++.+.- ...||+|..++...|++..
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 456889999998876 34556999999999999874 5789999999998887654
No 118
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=2e-05 Score=61.21 Aligned_cols=56 Identities=18% Similarity=0.336 Sum_probs=44.1
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCceEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~DiI~ 241 (371)
...+.|||+...|....+..++.+|||+|+..++..+- ...||+|..++...|+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~ 73 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQ 73 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTT
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHH
Confidence 45678999999998655434455999999999999983 268999999998776533
No 119
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.61 E-value=3.8e-05 Score=69.36 Aligned_cols=53 Identities=11% Similarity=-0.097 Sum_probs=42.9
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEe
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~L 242 (371)
...|.||||+..|.. =|.+ +|||+|+..|+...- ...||+|+.+|...|+|+-
T Consensus 104 p~~f~CPI~~elm~D---PV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred cHhhcccCccccCCC---CeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 457999999999986 2333 899999999999873 2369999999998887653
No 120
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=7.8e-05 Score=57.47 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=39.0
Q ss_pred CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcC
Q 017480 185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFG 235 (371)
Q Consensus 185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~ 235 (371)
....+.|||+...|..- ++.+|||+|+..++.++- ...||+|..++.
T Consensus 12 ~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP----VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE----EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe----eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 35578999999988652 346999999999999873 578999999996
No 121
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.55 E-value=1.1e-05 Score=80.00 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=0.0
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.++|.|++ +|. .+.+.+..++++..|+...+++ |++++++||+|+|++|.++.|. .++++.++++|++.++.+||
T Consensus 21 ~I~LKV~~-~g~--~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP-~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 21 HINLKVSD-GSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTP-EDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEec-CCc--EEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCCh-HHcCCCccchhhhhhccCch
Confidence 37899997 554 5677888899999999999999 9999999999999999999999 99999999999999999988
No 122
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=6.7e-05 Score=60.13 Aligned_cols=53 Identities=28% Similarity=0.519 Sum_probs=41.2
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--------cCCCCC--CCCC-cCCCceEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--------SSSCLV--CHEE-FGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--------~~~Cpv--Cg~~-f~~~DiI~ 241 (371)
...|.||||...|.. =|.+..|||+|+..||.+.- ...||+ |... +...|+++
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 457999999999986 45555699999999999873 248999 7666 77777653
No 123
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.50 E-value=6.2e-05 Score=53.44 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=40.3
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcC
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFG 235 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~ 235 (371)
..+.|||+...+......+.+.+|||+|...++.++- ...||+|..++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567999999986555567778999999999999873 578999998874
No 124
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=9e-05 Score=55.62 Aligned_cols=50 Identities=20% Similarity=0.382 Sum_probs=40.7
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCCCCCcCCCce
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVCHEEFGEMDK 239 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvCg~~f~~~Di 239 (371)
...+.|||+...|.. -+.+ +|||+|+..++.++- ...||+|..++...|+
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 446789999998875 2333 999999999999985 2489999999988765
No 125
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.48 E-value=0.00018 Score=57.54 Aligned_cols=51 Identities=20% Similarity=0.313 Sum_probs=41.7
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEE
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~ 241 (371)
.+.|||+...|.. -+.+.+|||+|+..++...- ...||+|..++...|+.+
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCc
Confidence 5789999999876 34446899999999999874 468999999998876543
No 126
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00011 Score=54.49 Aligned_cols=50 Identities=18% Similarity=0.427 Sum_probs=41.4
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCce
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDK 239 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~Di 239 (371)
...+.|||+...+..... -+|||+|+..++.+.- ...||+|..++..+|+
T Consensus 13 ~~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ----TECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCC----CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 456899999998876432 3999999999999974 4589999999988775
No 127
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.45 E-value=8.7e-05 Score=64.84 Aligned_cols=58 Identities=14% Similarity=0.287 Sum_probs=46.5
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEecCCh
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILINGNE 246 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~Lnp~~ 246 (371)
...+.|||+...|.. -|.+.+|||+|+..|+..+- ...||+|..++...+.+..|..-
T Consensus 52 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l 112 (165)
T 2ckl_B 52 HSELMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 112 (165)
T ss_dssp HHHHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHH
T ss_pred CCCCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHH
Confidence 346799999998876 35566999999999999973 56799999999877776666543
No 128
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.43 E-value=0.00019 Score=56.37 Aligned_cols=55 Identities=18% Similarity=0.361 Sum_probs=41.4
Q ss_pred CceeEcCCcccccCCceeEEEEec-cCccccHHHHHHhh----cCCCCCCCCCcCCCceEEecC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRT-CGHVLSTKALKEVK----SSSCLVCHEEFGEMDKILING 244 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~-CG~V~Se~alkevk----~~~CpvCg~~f~~~DiI~Lnp 244 (371)
...+.|||+...|..- |. -+ |||+|+..+|.+.- ...||+|..+|...+.+..|.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 70 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANK 70 (92)
T ss_dssp CTTTEETTTTEECSSC---EE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECH
T ss_pred CcCCCCCCCChhhcCc---eE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCH
Confidence 4568999999998753 33 36 99999999999873 358999999985444444443
No 129
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.36 E-value=1.5e-05 Score=62.36 Aligned_cols=63 Identities=17% Similarity=0.358 Sum_probs=49.1
Q ss_pred CceeEcCCcccccCCc-eeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEecCChHHH
Q 017480 186 GIRFQCPITGLEFNGK-YRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILINGNEEEI 249 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~-~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~Lnp~~ee~ 249 (371)
...+.|||+...++-. ..|. .-+|||.|+..++..+. ...||+|.++|...+++..+++.||+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~-p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~~~~ 75 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFF-PCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQEEL 75 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCC-SSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCCCSSC
T ss_pred ccCCcCCccCccCcccccccc-ccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCCHHHH
Confidence 3457899999988532 2222 11499999999999985 46899999999999999888887765
No 130
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.35 E-value=0.00044 Score=56.47 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEE
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
.+.|.|++++|. ..+.+.+..++++..|....+++ |+++.+.+|+|.|.+|.++.|. .+.++.++.+|++.
T Consensus 25 ~I~LkV~~~dg~-~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP-~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 25 QLQLRVQGKEKH-QTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELP-ADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEEESSSS-CEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCH-HHHTCCTTEEEEEE
T ss_pred eEEEEEEcCCCC-EEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCH-HHcCCCCCCEEEEe
Confidence 478999999994 24566777788999999998888 9999999999999999999999 99999999999873
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.34 E-value=0.00011 Score=67.98 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=41.6
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~ 241 (371)
...|.||||...|..- | +-+|||+|+..||...- ...||+|+.++...++|+
T Consensus 206 ~~~~~c~i~~~~~~dP---v-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---C-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp CSTTBCTTTCSBCSSE---E-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred CcccCCcCcCCHhcCC---e-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 3468999999999762 3 25799999999999873 334999999999887664
No 132
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.34 E-value=0.0002 Score=57.73 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=45.4
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--c-CCCCCCCCCcCCCceEEecCChHHH
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--S-SSCLVCHEEFGEMDKILINGNEEEI 249 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~-~~CpvCg~~f~~~DiI~Lnp~~ee~ 249 (371)
..+.|||+...|.. -|.+-+|||+|+..+|.+.- . ..||+|..+|...|++.. ..-+++
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~-~~~~~i 82 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNC-RWAEEV 82 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC-TTHHHH
T ss_pred CCCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhh-HHHHHH
Confidence 35789999999875 34447999999999999873 3 589999999998877654 434443
No 133
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=0.00031 Score=53.25 Aligned_cols=50 Identities=16% Similarity=0.458 Sum_probs=39.9
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~ 236 (371)
.....|||+...|.....+ ...+|||+|...++..+ ....||+|..++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~-~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLL-RVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEE-EEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeE-EEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3456899999998765544 44579999999999987 46789999988865
No 134
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.32 E-value=9.9e-05 Score=54.48 Aligned_cols=51 Identities=22% Similarity=0.563 Sum_probs=41.4
Q ss_pred CceeEcCCcccccCCc---eeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGK---YRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~---~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~ 236 (371)
...+.|||+...|... .+.+++.+|||+|...++.++- ...||+|..+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567899999988642 3566778999999999999873 5789999998864
No 135
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=6.6e-05 Score=56.11 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=45.0
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceEEecCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKILINGN 245 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI~Lnp~ 245 (371)
...+.|||+...+.. ++.+|||+|...++.++- ...||+|..++...|.+.+.|.
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 69 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPSS 69 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCCC
Confidence 345789999998876 456899999999999873 5789999999998887666553
No 136
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.00016 Score=54.41 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=40.7
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCCceE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEMDKI 240 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~DiI 240 (371)
...+.|||+...+... +. .+|||+|+..++.++- ...||+|..++...+++
T Consensus 13 ~~~~~C~IC~~~~~~~---~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 65 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VS-LPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLD 65 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EE-ETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHS
T ss_pred CCCCCCccCCcccCCC---EE-ccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhcc
Confidence 4568899999888653 33 3899999999999863 46899999999876654
No 137
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.27 E-value=0.00026 Score=54.13 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=42.2
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--------cCCCCCCCCCcCCCceEEe
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--------SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--------~~~CpvCg~~f~~~DiI~L 242 (371)
...+.|||+...|..-. +-+|||+|+..++..+- ...||+|..++...|+.+-
T Consensus 17 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n 77 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPV----SADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPN 77 (85)
T ss_dssp CTTTSCTTTCSCCSSCE----ECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEEC
T ss_pred ccCCCCcCCChhhCcce----eCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcC
Confidence 34578999999887632 45899999999999862 4589999999998776653
No 138
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.25 E-value=0.00014 Score=60.15 Aligned_cols=59 Identities=20% Similarity=0.446 Sum_probs=48.1
Q ss_pred ceeEcCCcccccCCc---eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCC
Q 017480 187 IRFQCPITGLEFNGK---YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGN 245 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~---~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~ 245 (371)
..+.|||+...|... .+.+++.+|||+|...++.+. ....||+|.++|...++..+.-.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 457899999988643 345566799999999999997 35689999999999998777643
No 139
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.23 E-value=0.00031 Score=57.10 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=40.2
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCC
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEM 237 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~ 237 (371)
..+.|||+...|.. -|.+.+|||+|+..|+.+.- ...||+|..++...
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 45789999998875 35556999999999999874 47899999999875
No 140
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.22 E-value=0.00043 Score=51.44 Aligned_cols=50 Identities=14% Similarity=0.300 Sum_probs=39.7
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~ 236 (371)
.....|||+...|..... +...+|||+|...++.++ ....||+|..++..
T Consensus 12 ~~~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGED-VRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSC-EEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCc-EEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 456789999998865444 445589999999999987 35789999998864
No 141
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00046 Score=65.79 Aligned_cols=53 Identities=23% Similarity=0.502 Sum_probs=43.9
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCC--CCCCcCCCceEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLV--CHEEFGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~Cpv--Cg~~f~~~DiI~ 241 (371)
...+.||||...|.. =|.+..|||+|+..||.+.- ...||+ |.+++...|+++
T Consensus 179 ~~el~CPIcl~~f~D---PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 179 KIELTCPITCKPYEA---PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp BCCSBCTTTSSBCSS---EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred ceeeECcCccCcccC---CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 567899999999965 34456899999999999873 247999 999999888765
No 142
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00043 Score=52.18 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=40.7
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~ 237 (371)
.....|||+...|.....++. .+|||+|...++.++- ...||+|..++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEE-ETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEE-cCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345689999999976655544 4899999999999873 56899999998754
No 143
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.00023 Score=54.37 Aligned_cols=51 Identities=24% Similarity=0.413 Sum_probs=40.9
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--------cCCCCCCCCCcCCCceE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--------SSSCLVCHEEFGEMDKI 240 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--------~~~CpvCg~~f~~~DiI 240 (371)
...+.|||+...+..-. . -+|||+|+..++.++- ...||+|..++...|+.
T Consensus 17 ~~~~~C~IC~~~~~~p~---~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPL---S-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCCCTTTCSCCSSCB---C-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred cCCCCCCCCCcccCCce---e-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence 34678999999987532 2 3899999999999862 46899999999987754
No 144
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.11 E-value=0.00025 Score=53.87 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=42.5
Q ss_pred CceeEcCCcccccCCceeEEEEec-cCccccHHHHHHhhc----CCCCCCCCCcCCCceEEec
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRT-CGHVLSTKALKEVKS----SSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~-CG~V~Se~alkevk~----~~CpvCg~~f~~~DiI~Ln 243 (371)
...+.|||+...|..- |. -+ |||+|+..++.+.-. ..||+|..++...|.+.-|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred CCCCCCcCCChHHhCC---eE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 4568999999988763 33 46 999999999998742 5899999998877766544
No 145
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.11 E-value=0.00066 Score=53.40 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=40.9
Q ss_pred cccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCcee
Q 017480 115 RLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLIN 171 (371)
Q Consensus 115 ~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~ 171 (371)
..-....|.||++.+.+||+. .-|+.|.+.+|.+||.....-|..+...+..+|++
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRL-PSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred cCchheECcccCchhcCCeEC-CCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence 334578999999999999766 58999999999999986433344444444444444
No 146
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.03 E-value=0.00032 Score=58.36 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=38.8
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCce
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDK 239 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~Di 239 (371)
..+.|||+...|..- |.+ +|||+|+..|+...- ...||+|..++...+.
T Consensus 51 ~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 102 (124)
T 3fl2_A 51 ETFQCICCQELVFRP---ITT-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYA 102 (124)
T ss_dssp HHTBCTTTSSBCSSE---EEC-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCC
T ss_pred cCCCCCcCChHHcCc---EEe-eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCC
Confidence 357899999988752 333 999999999998873 3489999999987443
No 147
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.99 E-value=0.00011 Score=72.85 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
+.|.|++ ++. .+.+.+..++++..|+...+++ |+++.+++|+|+|++|.++.|. .+.++.++.+|++.+..+||.
T Consensus 31 i~lkv~~-~~~--~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp-~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 31 INLKVSD-GSS--EIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAP-EDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEec-CCc--EEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCH-HHcCCCCCCEeeeeecccccc
Confidence 4567776 453 5667888899999999999999 9999999999999999999999 999999999999999999987
Q ss_pred CCCccc
Q 017480 84 GDGGAT 89 (371)
Q Consensus 84 ~~~~si 89 (371)
.---..
T Consensus 107 n~~~~~ 112 (389)
T 4da1_A 107 NLYFQA 112 (389)
T ss_dssp ------
T ss_pred ccceeE
Confidence 655433
No 148
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.99 E-value=0.00028 Score=53.55 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=39.9
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---------cCCCCCCCCCcCCCce
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---------SSSCLVCHEEFGEMDK 239 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---------~~~CpvCg~~f~~~Di 239 (371)
...+.|||+...|..-. . -+|||+|+..++.++- ...||+|..++...|+
T Consensus 10 ~~~~~C~IC~~~~~~p~---~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 10 QEEVTCPICLELLTEPL---S-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCCEETTTTEECSSCC---C-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred ccCCCCcCCCcccCCee---E-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 45689999999987632 2 3899999999999753 4589999999987664
No 149
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.96 E-value=0.0015 Score=52.68 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=63.1
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEee
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lr 78 (371)
.|-+.|-..+++ ..+|.|+++.|+.+|=+...++ |+.+++..|.|++++|+-+.++ --.||+++++|+|+..
T Consensus 9 ~m~v~Vl~~n~r--r~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpf-RlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 9 GSAVSVLAPNGR--RHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQW-RFANLPNNAKLEMVPV 81 (90)
T ss_dssp -CCEEEECTTSC--EEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBH-HHHCCCSSCEEEEECS
T ss_pred ccEEEEEcCCCc--EEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecccccee-EecCCCCCCEEEEEEc
Confidence 368999999996 6789999999999998888888 9999999999999999887776 8899999999999753
No 150
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.94 E-value=0.00043 Score=49.07 Aligned_cols=48 Identities=17% Similarity=0.356 Sum_probs=38.3
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFG 235 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~ 235 (371)
...|||+...|......+.+.+|||+|...++.+. ....||+|..++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45799999998765555555569999999999987 3578999988763
No 151
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.89 E-value=0.00042 Score=57.33 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=41.7
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~ 241 (371)
...+.|||+...|..- |. -+|||+|+..++.+.- ...||+|..++...++++
T Consensus 16 ~~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCcCChhhcCe---EE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 4568999999988753 33 4899999999999873 248999999999877653
No 152
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.86 E-value=0.00024 Score=58.68 Aligned_cols=49 Identities=16% Similarity=0.358 Sum_probs=40.4
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCce
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDK 239 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~Di 239 (371)
.+.|||+...|..- |.+.+|||+|+..++...-...||+|..++...|+
T Consensus 22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDL 70 (117)
T ss_dssp TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSC
T ss_pred CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccccc
Confidence 57899999888653 44459999999999998877889999999976554
No 153
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.84 E-value=0.00083 Score=57.08 Aligned_cols=46 Identities=22% Similarity=0.461 Sum_probs=37.2
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh--cCCCCCCCCCcCCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK--SSSCLVCHEEFGEM 237 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk--~~~CpvCg~~f~~~ 237 (371)
.+.|||+...|.. .|. -+|||+|+..|+.+.- ...||+|..++...
T Consensus 53 ~~~C~iC~~~~~~---~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVT-LNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS---EEE-ETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC---ceE-CCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 4679999998865 233 4899999999999873 56899999998654
No 154
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.74 E-value=0.0015 Score=51.72 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=39.7
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~ 236 (371)
.....|||+..+|......+. .+|||+|...++..+ ....||+|..+|..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345789999999876554444 469999999999997 35689999988753
No 155
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.73 E-value=0.00073 Score=67.68 Aligned_cols=53 Identities=23% Similarity=0.479 Sum_probs=44.8
Q ss_pred eEcCCcccccCCceeEEEEeccCccccHHHHHHh---hcCCCCCCCCCcCCCceEEecCC
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV---KSSSCLVCHEEFGEMDKILINGN 245 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev---k~~~CpvCg~~f~~~DiI~Lnp~ 245 (371)
..||||...+.. .++-||||+|+..|+... ....||+|..++...++|.++|-
T Consensus 333 ~~C~ICle~~~~----pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~pf 388 (389)
T 2y1n_A 333 QLCKICAENDKD----VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDPF 388 (389)
T ss_dssp SBCTTTSSSBCC----EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCCTT
T ss_pred CCCCccCcCCCC----eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEecCCC
Confidence 689999887754 456799999999999987 35799999999999988888773
No 156
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.72 E-value=0.0013 Score=48.62 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=37.6
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGE 236 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~ 236 (371)
...|||+...+... +++.+|||+|...++... ....||+|..++..
T Consensus 5 ~~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSNY---SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccCC---cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45799999988653 356799999999999986 35789999999863
No 157
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.71 E-value=0.0012 Score=53.68 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=39.3
Q ss_pred eEcCCcccccCCc--------------eeEEEEeccCccccHHHHHHhh-------cCCCCCCCCCcCCC
Q 017480 189 FQCPITGLEFNGK--------------YRFVAMRTCGHVLSTKALKEVK-------SSSCLVCHEEFGEM 237 (371)
Q Consensus 189 ~~CPVT~~e~ng~--------------~rfV~L~~CG~V~Se~alkevk-------~~~CpvCg~~f~~~ 237 (371)
..|||+...|... ..++.+-+|||+|...||.++- ...||+|...|...
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4799999988432 2466688999999999999874 45899999999753
No 158
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.71 E-value=0.0021 Score=52.17 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=42.2
Q ss_pred ccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceee
Q 017480 116 LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINV 172 (371)
Q Consensus 116 ~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~L 172 (371)
.-....|+||++++.+||+. .-|+.|++.+|.+||.....-|..+......||++.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~-~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRL-PSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEE-TTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred CcHhhCCcCccCcccCCeEC-CCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence 34578999999999999776 489999999999998754334555555555555543
No 159
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.70 E-value=0.0011 Score=57.56 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=40.5
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEec
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~Ln 243 (371)
.+.|||+...|..- |. -+|||+|+..|+.+.- ...||+|..++...+.+..|
T Consensus 78 ~~~C~IC~~~~~~p---v~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n 132 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPN 132 (150)
T ss_dssp HTBCTTTSSBCSSE---EE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBC
T ss_pred CCEeecCChhhcCC---EE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCC
Confidence 47899999988752 22 4999999999999874 24799999999887543333
No 160
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.61 E-value=0.00071 Score=55.51 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=42.0
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEEe
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~L 242 (371)
..+.|||+...|..- |. -+|||+|+..++.+.- ...||+|..++...|++..
T Consensus 22 ~~~~C~IC~~~~~~p---~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 22 KSISCQICEHILADP---VE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HHTBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCCcHhcCc---EE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 357899999988753 22 4999999999999873 4689999999998887643
No 161
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.61 E-value=0.0028 Score=51.32 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=41.3
Q ss_pred cCCccccCCCCCCCCCeeeCCCC-ceecHHHHHHHHHcCCCCCccCccCCCCCceee
Q 017480 117 SKWCNCALSNEPLREPCVIDKLG-TIFNKEALVHALLSKNLPKQYSYIKGLKDLINV 172 (371)
Q Consensus 117 ~~w~~CaLS~~PL~~PIV~~~lG-~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~L 172 (371)
-....|.|+++++.+||+. ..| +.|.+.+|.+||.....-|..+......||++.
T Consensus 20 p~~~~CpI~~~~m~dPV~~-~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVL-PSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CTTTBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred cHhcCCcCccccccCCeEC-CCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence 3467899999999999665 677 999999999998764444555555555565553
No 162
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.59 E-value=0.014 Score=44.14 Aligned_cols=70 Identities=11% Similarity=0.204 Sum_probs=53.4
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
|...|+|.|-+..+. ..+++.+..||.+|..++ ++++....+..||..+..+.. |.+++.|.+.-.+-
T Consensus 1 ~~~~m~i~vNg~~~~---~~~~~~~~~tv~~Ll~~l---~~~~~~v~vavN~~~v~~~~~------L~~gD~V~ii~~V~ 68 (70)
T 1ryj_A 1 MVIGMKFTVITDDGK---KILESGAPRRIKDVLGEL---EIPIETVVVKKNGQIVIDEEE------IFDGDIIEVIRVIY 68 (70)
T ss_dssp CCCCEEEEEEETTEE---EEEEESSCCBHHHHHHHT---TCCTTTEEEEETTEECCTTSB------CCTTCEEEEEECTT
T ss_pred CceeEEEEEeCccCc---eeEECCCCCcHHHHHHHh---CCCCCCEEEEECCEECCCccc------CCCCCEEEEEeccc
Confidence 778899999988763 466777778999997655 566777788999999887654 57889898765544
Q ss_pred CC
Q 017480 81 GG 82 (371)
Q Consensus 81 G~ 82 (371)
||
T Consensus 69 GG 70 (70)
T 1ryj_A 69 GG 70 (70)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 163
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=46.69 Aligned_cols=41 Identities=17% Similarity=0.459 Sum_probs=33.0
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh-----hcCCCCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV-----KSSSCLVC 230 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev-----k~~~CpvC 230 (371)
...+.|||+...+... ++-+|||+|...++.+. ....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP----VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC----CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc----EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3467899999998764 22489999999999998 34689988
No 164
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.46 E-value=0.0021 Score=55.05 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=53.4
Q ss_pred EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCC-ceEEEe---------------------------------
Q 017480 6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLS-SLYFTL--------------------------------- 50 (371)
Q Consensus 6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~-~q~Li~--------------------------------- 50 (371)
-|-||.++|. ..++.|+.+.||.+++..|+.. ||+.. +..|+.
T Consensus 13 ~LkV~llDg~--~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 13 PLKIRMLDGT--VKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEEECTTSC--EEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred cEEEEcCCCC--EEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHH
Confidence 3889999997 4556666677999999999999 98643 222221
Q ss_pred -----CCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 51 -----NGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 51 -----~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
++.+|+++.+| .++||.+++||-|.-
T Consensus 91 L~~dd~~~WLD~srtL-~EQGI~e~~tllLRr 121 (128)
T 2kc2_A 91 LHTDDELNWLDHGRTL-REQGVEEHETLLLRR 121 (128)
T ss_dssp CCCSSSEEEECSSSCH-HHHTCCTTSEEEEEE
T ss_pred hcccCCCCcccCCCcH-HHcCCCCCCEEEEEE
Confidence 24789999999 999999999976654
No 165
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=47.29 Aligned_cols=41 Identities=24% Similarity=0.520 Sum_probs=32.5
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-----cCCCCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-----SSSCLVC 230 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-----~~~CpvC 230 (371)
...+.|||+...|..- +.+ +|||+|+..++.++- ...||+|
T Consensus 18 ~~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKP---VTI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSC---EEC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCe---EEe-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4467899999988752 333 999999999999874 2479988
No 166
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.37 E-value=0.0015 Score=50.68 Aligned_cols=49 Identities=14% Similarity=0.376 Sum_probs=36.6
Q ss_pred EcCCcccccC-----------CceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCc
Q 017480 190 QCPITGLEFN-----------GKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMD 238 (371)
Q Consensus 190 ~CPVT~~e~n-----------g~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~D 238 (371)
.|+|+..+|. +....+.+-+|||+|-..+|.+. ....||+|..+|...+
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 3777776664 33445566679999999999997 3578999999987543
No 167
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.33 E-value=0.0017 Score=51.52 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=39.6
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----------cCCCCC--CCCC--cCCCce
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----------SSSCLV--CHEE--FGEMDK 239 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----------~~~Cpv--Cg~~--f~~~Di 239 (371)
...+.|||+..++.+. .++.+.+|||+|+..++++.- ...||. |... +..+++
T Consensus 3 ~~~~~C~IC~~~~~~~-~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVE-QMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp CSBCCCSSSCCCCBGG-GEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCCcCCcccCcccccc-cceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 3568899999888643 355567899999999998752 247999 9998 554443
No 168
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.30 E-value=0.0033 Score=46.58 Aligned_cols=53 Identities=17% Similarity=0.329 Sum_probs=39.7
Q ss_pred CceeEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVK--SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk--~~~CpvCg~~f~~~DiI~L 242 (371)
.....|+|+...+.+. .+++.||||+ ++..++..+. ...||+|..++. ++|.+
T Consensus 5 ~~~~~C~IC~~~~~~~--~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i 60 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDG--NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ--LVIKV 60 (63)
T ss_dssp GGGSBCTTTSSSBSCE--EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC--EEEEE
T ss_pred CcCCCCcccCCcCCCe--EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh--ceEEE
Confidence 3456799998766432 3445699998 8999999886 458999999985 45554
No 169
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.25 E-value=0.0099 Score=49.68 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc---CCCCC------ceEEEe----CCeeCCCC------------
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL---DQSLS------SLYFTL----NGKILDES------------ 58 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~------~q~Li~----~Gk~L~D~------------ 58 (371)
+|-|+|=.+.+....+.+.|-..|||.|+|++|.+. |+|.+ ++.|-+ .|+.|.|.
T Consensus 11 ~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkr 90 (111)
T 4e71_A 11 PLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKR 90 (111)
T ss_dssp EEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCC
T ss_pred EEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceE
Confidence 455666544333346788888899999999999876 66654 455654 35667552
Q ss_pred -CCcccCCCCCCCCeEEEEee
Q 017480 59 -TPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 59 -~tL~~~~~I~~~sTL~L~lr 78 (371)
-|| +.|+|++|+||.|..|
T Consensus 91 LNTL-~HY~V~dgatl~l~~~ 110 (111)
T 4e71_A 91 VNTL-MHYNVRDGATLILSKV 110 (111)
T ss_dssp CCBH-HHHTCCTTCEEEEEEC
T ss_pred ecch-hhcCCCCCCEEEEEeC
Confidence 378 8999999999988765
No 170
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.22 E-value=0.0014 Score=53.64 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=37.8
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~ 236 (371)
...+.|||+...|..- |.+ +|||+|+..|+..+- ...||+|..++..
T Consensus 13 ~~~~~C~iC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEP---VTL-PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSC---EEC-TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCce---eEc-CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3468999999888752 333 999999999999874 4589999999864
No 171
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.17 E-value=0.019 Score=44.34 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGGG 84 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~~ 84 (371)
|||.||-. |. ....+++.+..||++| |...|+|+....+..||+++..+..+ ++.+|. .++..|||-
T Consensus 1 M~v~Vkl~-g~-~~~~~ev~~g~Tv~dL---L~~Lgl~~~~VvV~vNG~~v~~d~~l-------~GD~Ve-Iv~~V~G~~ 67 (74)
T 2l32_A 1 MNVTVEVV-GE-ETSEVAVDDDGTYADL---VRAVDLSPHEVTVLVDGRPVPEDQSV-------EVDRVK-VLRLIKGGL 67 (74)
T ss_dssp CEEEEECS-SS-SEEEEECSTTCSHHHH---HHTTCCCSSCCCEECCCCCCCTTSSS-------CCCCEE-ECSSCSCC-
T ss_pred CEEEEEEe-Cc-cceeEEcCCCCcHHHH---HHHcCCCcceEEEEECCEECCHHHCC-------CCCEEE-EEEeecccc
Confidence 77888876 43 3556899999999998 66779999999899999999877533 368886 567777763
No 172
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.04 E-value=0.002 Score=49.09 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=35.9
Q ss_pred eeEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhhcCCCCCCCCCcCCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVKSSSCLVCHEEFGEM 237 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk~~~CpvCg~~f~~~ 237 (371)
.+.|||+...+.. .++.||||+ |+..++..+ ..||+|..++...
T Consensus 25 ~~~C~IC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV--DKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC----BCCSSSCCCCBCHHHHHHC--SBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC----EEEecCCCHHHHHHHhhCC--CCCccCCceecCc
Confidence 4689999887654 345699999 999999865 6899999999764
No 173
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.04 E-value=0.0028 Score=55.36 Aligned_cols=52 Identities=21% Similarity=0.409 Sum_probs=42.5
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~ 241 (371)
...|.|||+...|..- |. -+|||+|+..++.++- ...||+|..++...++++
T Consensus 16 ~~~~~C~IC~~~~~~p---v~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 16 ESKYECPICLMALREA---VQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCChhhcCc---EE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 4568999999998763 22 4899999999999873 348999999999887664
No 174
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.01 E-value=0.008 Score=44.60 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=37.5
Q ss_pred eeEcCCcccccCCceeEEE-EeccCcc-ccHHHHHHhh--cCCCCCCCCCcCCCceEEe
Q 017480 188 RFQCPITGLEFNGKYRFVA-MRTCGHV-LSTKALKEVK--SSSCLVCHEEFGEMDKILI 242 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~-L~~CG~V-~Se~alkevk--~~~CpvCg~~f~~~DiI~L 242 (371)
...|+|+...+.+. ++ ..||||+ ++..++..+. ...||+|..++. ++|.+
T Consensus 8 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i 61 (64)
T 2vje_A 8 IEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ--MIVLT 61 (64)
T ss_dssp GSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC--EEEEE
T ss_pred cCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh--ceEee
Confidence 34699998876542 32 2399999 7999999885 467999999985 45655
No 175
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.90 E-value=0.003 Score=48.06 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=35.6
Q ss_pred eeEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhhcCCCCCCCCCcCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk~~~CpvCg~~f~~ 236 (371)
.+.|||+...+.. .++.||||+ |+..++..+ ..||+|..++..
T Consensus 24 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~--~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA----IVFVPCGHLVTCKQCAEAV--DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC----EEEETTCCBCCCHHHHTTC--SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC----EEEcCCCChhHHHHhhhcC--ccCCCcCcCccC
Confidence 4689999887654 334599999 999999988 789999999875
No 176
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.81 E-value=0.0061 Score=48.56 Aligned_cols=36 Identities=19% Similarity=0.480 Sum_probs=31.4
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k 154 (371)
-..|.|+++++.+||+.-.-|+.|.+++|.+||...
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~ 42 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESR 42 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHH
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHc
Confidence 357999999999997764589999999999999863
No 177
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=95.75 E-value=0.058 Score=41.97 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=55.2
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeC---CCCCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKIL---DESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L---~D~~tL~~~~~I~~~sTL~L~ 76 (371)
..|-||..+|......+.. ++||.+|.+.|...+.+...+.|+ |-.+.| +.+.|| .+.||.+.++|.|.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~--~~tl~~v~~fv~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL-~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLA--SNKLQIVFDFVASKGFPWDEYKLLSTFPRRDVTQLDPNKSL-LEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEET--TSBHHHHHHHHHHTTCCTTTEEEECSSSCCBGGGSCTTSBT-TTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCC--CCCHHHHHHHHHHcCCCCCCeEEEeCCCCCCCcCCCCCCCH-HHCCCCCCCEEEEE
Confidence 5788999999743444555 679999999999887778889997 446878 456899 99999999998775
No 178
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=95.64 E-value=0.01 Score=53.45 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=40.4
Q ss_pred cCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCC-CCCccCccCCCCCcee
Q 017480 117 SKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN-LPKQYSYIKGLKDLIN 171 (371)
Q Consensus 117 ~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~-~~~~~~HIksLKDlv~ 171 (371)
-....|+||++++.+||+. ..|+.|++.+|..||.... .-|.++...+..||++
T Consensus 104 p~~f~CPI~~elm~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 104 PDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp CGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred cHhhcccCccccCCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence 4568899999999999766 7999999999999998632 2344444444455544
No 179
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.64 E-value=0.038 Score=44.93 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
+.|-|+. .|. .+.+.+-.++.+.-|....+.+ |+++++.||.|.|..+.++.|- .+.++..+.+|++.+
T Consensus 22 IniKV~~-~g~--ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP-~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIRC-RAD--LVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATP-RTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEEC-SSS--EEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCH-HHHTCCSSCEEEEEE
T ss_pred EEEEEEc-CCc--EEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCH-hHcCCCCCCEEEEEE
Confidence 7889995 565 4556666688999999999999 9999999999999999998888 899999999998754
No 180
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.49 E-value=0.0079 Score=45.33 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=39.3
Q ss_pred CceeEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhhcCCCCCCCCCcCCCceEEec
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVKSSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk~~~CpvCg~~f~~~DiI~Ln 243 (371)
.....|+|+...+. -+++.||||+ |+..++..+ ..||+|..++.. +|.|.
T Consensus 13 ~~~~~C~IC~~~~~----~~v~~pCgH~~~C~~C~~~~--~~CP~CR~~i~~--~~~i~ 63 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV----NWVLLPCRHTCLCDGCVKYF--QQCPMCRQFVQE--SFALS 63 (68)
T ss_dssp CCSSCCSSSSSSCC----CCEETTTTBCCSCTTHHHHC--SSCTTTCCCCCC--EECCC
T ss_pred CCCCCCCCcCcCCC----CEEEECCCChhhhHHHHhcC--CCCCCCCcchhc--eEEee
Confidence 34568999987654 4788999999 999999964 689999999865 45554
No 181
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=95.47 E-value=0.007 Score=46.88 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=37.0
Q ss_pred eEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhhcCCCCCCCCCcCCCceEEec
Q 017480 189 FQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVKSSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 189 ~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk~~~CpvCg~~f~~~DiI~Ln 243 (371)
..|+|+...+.. +++.||||+ |+..++..+. .||+|..++... |.+.
T Consensus 19 ~~C~IC~~~~~~----~v~~pCgH~~~C~~C~~~~~--~CP~Cr~~i~~~--~~i~ 66 (79)
T 2yho_A 19 MLCMVCCEEEIN----STFCPCGHTVCCESCAAQLQ--SCPVCRSRVEHV--QHVY 66 (79)
T ss_dssp TBCTTTSSSBCC----EEEETTCBCCBCHHHHTTCS--BCTTTCCBCCEE--EECB
T ss_pred CEeEEeCcccCc----EEEECCCCHHHHHHHHHhcC--cCCCCCchhhCe--EEEE
Confidence 479999776543 566799999 9999999774 899999999763 4444
No 182
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.42 E-value=0.0029 Score=45.57 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=36.4
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~ 236 (371)
...+.|||+...|..- .+-+|||+|+..++.. ....||+|..++..
T Consensus 4 ~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-CCCCCCcCCcEeec
Confidence 3457899999888752 3358999999999987 45689999998864
No 183
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.91 E-value=0.12 Score=44.04 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=47.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc---CCCC------CceEEEe----CCe-eCCCC-------------CCcccCCCCCCC
Q 017480 18 TLTVGANQFETLNHLKRSLLSL---DQSL------SSLYFTL----NGK-ILDES-------------TPLFKNPQIAPL 70 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~---gi~~------~~q~Li~----~Gk-~L~D~-------------~tL~~~~~I~~~ 70 (371)
.+.+.|-..|||.|+|++|.+. ++|. +++.|-+ .|+ .|.|. -|| +.|+|+++
T Consensus 18 ~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL-~HY~V~dg 96 (127)
T 3h6n_A 18 SLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTL-AHYKIPEG 96 (127)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBT-TTTTCCTT
T ss_pred ceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccc-cccCCCCC
Confidence 5778888889999999999876 6665 5667765 333 36542 388 99999999
Q ss_pred CeEEEEeee
Q 017480 71 STLYLRQRV 79 (371)
Q Consensus 71 sTL~L~lrL 79 (371)
+||.|..++
T Consensus 97 atv~l~~~~ 105 (127)
T 3h6n_A 97 ASLAMSLID 105 (127)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEcc
Confidence 999998763
No 184
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=94.81 E-value=0.026 Score=43.93 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCeeeEEEEcC--CCCCHHHHHHHHhccCCC-CCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 5 TQIFIKSPSNSLTTLTVGAN--QFETLNHLKRSLLSLDQS-LSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~--~~~TV~~lK~~i~~~gi~-~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
|+|.| +|. .+++. +..||.+|-+ +++++ +....+..||..+.-+. . .++-|++++.|++ ++..|
T Consensus 1 M~I~v---NGe----~~e~~~~~~~Tl~~LL~---~l~~~~~~~vAVavNg~iVpr~~-~-~~~~L~dGD~IEI-v~~Vg 67 (78)
T 2k5p_A 1 MNLTV---NGK----PSTVDGAESLNVTELLS---ALKVAQAEYVTVELNGEVLEREA-F-DATTVKDGDAVEF-LYFMG 67 (78)
T ss_dssp CEEEE---TTE----EEECSSCSCEEHHHHHH---HHTCSCTTTCCEEETTEECCTTH-H-HHCEECSSBCEEE-CCCCC
T ss_pred CEEEE---CCE----EEEcCCCCCCcHHHHHH---HcCCCCCCcEEEEECCEECChHH-c-CcccCCCCCEEEE-Eeeec
Confidence 67777 454 45666 5679999944 44677 77778899999987652 2 5567899999975 66667
Q ss_pred CCCC
Q 017480 82 GGGD 85 (371)
Q Consensus 82 ~~~~ 85 (371)
||.|
T Consensus 68 GG~~ 71 (78)
T 2k5p_A 68 GGKL 71 (78)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7665
No 185
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=94.33 E-value=0.0057 Score=52.53 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=36.9
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhc---CCCCCCCCCcC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKS---SSCLVCHEEFG 235 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~---~~CpvCg~~f~ 235 (371)
...|.|||+...|..- |. -+|||+|+..+|.++-. ..||+|..+..
T Consensus 29 ~~~~~C~IC~~~~~~p---v~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc---EE-CCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4578999999998754 22 49999999999999742 48999998653
No 186
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.13 E-value=0.037 Score=45.42 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=38.4
Q ss_pred EcCCcccccCCceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCCCceEE
Q 017480 190 QCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 190 ~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~~DiI~ 241 (371)
.||.++..+.-..| +-||+|||+..+..+.. ...||.|..++..-+.+.
T Consensus 3 fC~~C~~Pi~iygR---mIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~ 54 (101)
T 3vk6_A 3 FCDKCGLPIKVYGR---MIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCT 54 (101)
T ss_dssp BCTTTCSBCSEEEE---EETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEEE
T ss_pred ecCccCCCeEEEee---eccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEec
Confidence 59999998874433 34999999999999863 578999999998655443
No 187
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.79 E-value=0.1 Score=43.88 Aligned_cols=74 Identities=20% Similarity=0.283 Sum_probs=50.5
Q ss_pred ceEEEEEcCCCC-eeeEEEEcCCCCCHHHHHHHHhcc---CCCCC------ceEEEe-CC---e-eCCC--C--------
Q 017480 4 KTQIFIKSPSNS-LTTLTVGANQFETLNHLKRSLLSL---DQSLS------SLYFTL-NG---K-ILDE--S-------- 58 (371)
Q Consensus 4 ~MQIFVk~~~g~-~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~------~q~Li~-~G---k-~L~D--~-------- 58 (371)
.|-|+|-.+.+. ...+.+.|-..|||.|+|++|.+. ++|.+ ++.|-+ .| + .|.| .
T Consensus 13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~w 92 (117)
T 4e74_A 13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDW 92 (117)
T ss_dssp EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---C
T ss_pred EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcc
Confidence 456666544321 235778888889999999999876 67654 556654 33 3 2544 1
Q ss_pred ---CCcccCCCCCCCCeEEEEee
Q 017480 59 ---TPLFKNPQIAPLSTLYLRQR 78 (371)
Q Consensus 59 ---~tL~~~~~I~~~sTL~L~lr 78 (371)
-|| +.|+|++++||.|..|
T Consensus 93 krLNTL-~HY~V~dgatl~l~~~ 114 (117)
T 4e74_A 93 KRLNTL-AHYQVPDGSVVALVSK 114 (117)
T ss_dssp CCCCBH-HHHTCCTTCEEEEEEC
T ss_pred eEeccc-cccCCCCCCEEEEEeC
Confidence 378 8999999999998765
No 188
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=93.75 E-value=0.06 Score=44.15 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=35.5
Q ss_pred EcCCcccccCCc--------------eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcC
Q 017480 190 QCPITGLEFNGK--------------YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFG 235 (371)
Q Consensus 190 ~CPVT~~e~ng~--------------~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~ 235 (371)
.|+|+...|... --.+++-+|||+|-..+|... ....||+|..+|.
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 488888777643 113556699999999999997 3578999999875
No 189
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=93.74 E-value=0.17 Score=40.27 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=46.3
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCC-CCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQF-ETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~-~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.|+|.| +|. .+++.+. .||.+|-+.+ ++++....+..||..+..+. . .+.-|.+++.|.+.-.+-||
T Consensus 20 ~M~I~v---NGe----~~el~~~~~Tv~dLL~~L---~~~~~~vaVavNg~iV~~~~-~-~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 20 RHMLQL---NGK----DVKWKKDTGTIQDLLASY---QLENKIVIVERNKEIIGKER-Y-HEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp --CEEE---TTE----EECCSSSCCBHHHHHHHT---TCTTSCCEEEETTEEECGGG-T-TTSBCCSSSEEEEEEECCC-
T ss_pred ceEEEE---CCE----EEECCCCCCcHHHHHHHh---CCCCCCEEEEECCEECChhh-c-CCcCCCCCCEEEEEcccccC
Confidence 588888 553 5667666 8999996654 56677778899999887542 2 45678999999876655443
No 190
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=93.50 E-value=0.095 Score=40.14 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
|+|.| +|. .+++ +..||.+| |.++++++....+..||..+..+. . .++-|++++.|.+.-.+-||.
T Consensus 1 M~I~v---NG~----~~e~-~~~Tl~~L---L~~l~~~~~~vAV~vNg~iVpr~~-~-~~~~L~dGD~veIv~~VgGG~ 66 (73)
T 2kl0_A 1 MLVTI---NGE----QREV-QSASVAAL---MTELDCTGGHFAVALNYDVVPRGK-W-DETPVTAGDEIEILTPRQGGL 66 (73)
T ss_dssp CCEEE---TTE----EECC-CCSBHHHH---HHHTTCCSSSCEEEESSSEECHHH-H-TTCBCCTTCEEEEECCCCCCC
T ss_pred CEEEE---CCE----EEEc-CCCcHHHH---HHHcCCCCCcEEEEECCEECChHH-c-CcccCCCCCEEEEEccccCCc
Confidence 66766 454 4556 56899998 555578888888999999887542 2 556789999998655544443
No 191
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=93.49 E-value=0.026 Score=55.48 Aligned_cols=43 Identities=16% Similarity=0.397 Sum_probs=35.6
Q ss_pred eeEcCCcccccCCceeEEEEeccCcc-ccHHHHHHhhcCCCCCCCCCcCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHV-LSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V-~Se~alkevk~~~CpvCg~~f~~ 236 (371)
.+.|||+...+.. .| +-||||+ |+..|+..+ ..||+|..++..
T Consensus 295 ~~~C~IC~~~~~~---~v-~lpCgH~~fC~~C~~~~--~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VV-FIPCGHLVVCQECAPSL--RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC---EE-EETTCCEEECTTTGGGC--SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc---eE-EcCCCChhHhHHHHhcC--CcCCCCCCCccC
Confidence 4689999987754 34 3499999 999999987 689999999864
No 192
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.49 E-value=0.058 Score=49.58 Aligned_cols=37 Identities=22% Similarity=0.490 Sum_probs=32.3
Q ss_pred ccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 116 LSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 116 ~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
...+..|.|+++++.+||+. .-|+.|.+..|.+||-.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~-~~gh~f~~~~i~~~~~~ 241 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCIT-PSGITYDRKDIEEHLQR 241 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEEC-SSCCEEETTHHHHHHHH
T ss_pred CCcccCCcCcCCHhcCCeEC-CCCCEECHHHHHHHHHH
Confidence 35688999999999999665 58999999999999865
No 193
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.13 E-value=0.17 Score=43.72 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=50.5
Q ss_pred ceEEEEEcCCC----CeeeEEEEcCCCCCHHHHHHHHhcc---CCCCC------ceEEEe----CCe-eCCCC-------
Q 017480 4 KTQIFIKSPSN----SLTTLTVGANQFETLNHLKRSLLSL---DQSLS------SLYFTL----NGK-ILDES------- 58 (371)
Q Consensus 4 ~MQIFVk~~~g----~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~------~q~Li~----~Gk-~L~D~------- 58 (371)
.|-|+|=...+ ....+.+.|-..|||.|+|++|.+. |+|.+ ++-|-+ +|+ .|.|.
T Consensus 24 ~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~ 103 (138)
T 2r2o_A 24 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQ 103 (138)
T ss_dssp EEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEE
T ss_pred EEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccccc
Confidence 45555533322 1245778888889999999999977 67654 445544 243 36542
Q ss_pred ------CCcccCCCCCCCCeEEEEeee
Q 017480 59 ------TPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 59 ------~tL~~~~~I~~~sTL~L~lrL 79 (371)
-|| +.|+|++++||.|+.|.
T Consensus 104 ~~wkrLNTL-~HY~V~Dga~l~l~~~~ 129 (138)
T 2r2o_A 104 GLWRRLNTL-QHYKVPDGATVALVPCL 129 (138)
T ss_dssp TTEEECCBH-HHHTCCTTCEEEEEEC-
T ss_pred CCceeecch-hccCCCCCCEEEEEECC
Confidence 288 99999999999987764
No 194
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=92.62 E-value=0.32 Score=40.89 Aligned_cols=69 Identities=14% Similarity=0.232 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeC--C-CCCCcccCCCCCCCCeEEEE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKIL--D-ESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L--~-D~~tL~~~~~I~~~sTL~L~ 76 (371)
..|-||..+|......+.. ++||.+|...|...+.+...|.|+ |=.+.| + .+.|| .+.||.+..+|.|.
T Consensus 44 t~IqIRlPdG~rl~~rF~~--~~tl~~V~~fV~~~~~~~~~F~L~t~fPrk~l~~~d~~~TL-~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPE--QAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITL-QEAGLCPQETVFVQ 117 (124)
T ss_dssp EEEEEECTTSCEEEEEEET--TSCHHHHHHHHHHHHCCTTTEEEECSSSCCEETSSCSSSCT-TTTTCCSSBCCEEE
T ss_pred EEEEEECCCCCEEEEEeCC--CCCHHHHHHHHHhcCCCCCCeEEecCCCCcCCccCCCCCCH-HHCCCCCceEEEEE
Confidence 5789999999733444444 779999999998777777788886 458888 3 37899 99999998888765
No 195
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=91.84 E-value=0.62 Score=38.11 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEE--eCCeeCC---CCCCcccCCCCCCCCeEEEEe
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFT--LNGKILD---ESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li--~~Gk~L~---D~~tL~~~~~I~~~sTL~L~l 77 (371)
-.|-||..+|. .+.-.-..++||.+|.+.|... +.+...+.|+ |--+.|+ .+.|| .+.||.+.++|.+..
T Consensus 14 t~IqIRlpdG~--rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL-~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 14 ARIQFRLPDGS--SFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRL-LDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEEECSSSC--EEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBT-GGGTCSSEEEEEEEC
T ss_pred EEEEEECCCCC--EEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCH-HHCCCCCceEEEEEE
Confidence 57889999997 3444555578999999999988 8877788886 4577775 36799 999999998887665
No 196
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=91.37 E-value=0.35 Score=35.70 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=45.9
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
|+|.| +|+ .+++.+..||.+|.+.+ +++.....+..||..+..+. . .+.-|++++.|.+.-.+-||
T Consensus 1 m~i~v---Ng~----~~~~~~~~tv~~ll~~l---~~~~~~v~vavN~~~v~~~~-~-~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 1 MQILF---NDQ----AMQCAAGQTVHELLEQL---DQRQAGAALAINQQIVPREQ-W-AQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp CCEEE---SSC----EECCCTTCCHHHHHHHH---TCCCSSEEEEETTEEECHHH-H-TTCCCCTTEEECEEESCCCC
T ss_pred CEEEE---CCE----EEEcCCCCcHHHHHHHc---CCCCCCEEEEECCEECCchh-c-CCcCCCCCCEEEEEeecccC
Confidence 66766 554 45667778999997765 45667778889999887431 1 34557899999876655543
No 197
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=91.16 E-value=0.74 Score=34.63 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=46.3
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCC--CceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSL--SSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFG 81 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~--~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G 81 (371)
|+|-||-...- +.-++++ +..||.+|.+.|... ++.. ....+..||+.+.+. ++-|+++++|.+..++-|
T Consensus 1 M~v~V~~fa~l-~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~-----~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 1 MMVEVRFFGPI-KEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL-----NTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEEEEECTTC-CCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT-----TCCCCTTCEEEEECCBCC
T ss_pred CEEEEEEEeec-ceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC-----CcCCCCCCEEEEECCCCC
Confidence 44555544331 2223555 557999999999876 4322 456777899885432 234789999998888777
Q ss_pred C
Q 017480 82 G 82 (371)
Q Consensus 82 ~ 82 (371)
|
T Consensus 74 G 74 (74)
T 3rpf_C 74 G 74 (74)
T ss_dssp C
T ss_pred C
Confidence 5
No 198
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=90.44 E-value=0.05 Score=45.58 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=0.0
Q ss_pred EcCCcccccCCc--------------eeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcC
Q 017480 190 QCPITGLEFNGK--------------YRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFG 235 (371)
Q Consensus 190 ~CPVT~~e~ng~--------------~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~ 235 (371)
.|+|+..+|... .-.+++-+|||+|...|+.+. ....||+|..+|.
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp --------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 588888777531 123344589999999999986 3568999999875
No 199
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=89.85 E-value=0.86 Score=37.19 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=54.6
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEE--eCCeeCC--CCCCcccCCCCCCCCeEEEEe
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFT--LNGKILD--ESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li--~~Gk~L~--D~~tL~~~~~I~~~sTL~L~l 77 (371)
...|-||..+|......+.. ++||.+|.+.|...+..+..+.|+ |=.+.|. .+.|| .+.||.+..+|.|..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~--~~tl~~v~~fv~~~~~~~~~f~L~t~fPrk~l~~d~~~TL-~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFK--SWNSQVLLDWMMKVGYHKSLYRLSTSFPRRALEVEGGSSL-EDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEES--SSBTHHHHHHHHHHTCCTTTEEEECSSSCCBCCCCSSCBH-HHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCC--CCCHHHHHHHHHhcCCCCCCeEEEeCCCCcCCCCCCCCCH-HHcCCCCCeEEEEEe
Confidence 36789999999744445555 679999999999776666788886 4477786 46899 999999988886543
No 200
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=89.44 E-value=1.1 Score=35.69 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=51.3
Q ss_pred EEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeec
Q 017480 20 TVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 20 ~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
.+++ .+++..||.-|+.+ |+..+.--+.+.+.+|+++.+| -+-+++-...+.+.+.+-
T Consensus 8 hmDI--~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~L-vdQcVqgeGlVQinvqik 66 (89)
T 2juo_A 8 AIDI--NEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSL-FDQGVKTDGTVQLSVQVI 66 (89)
T ss_dssp EEES--SSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBT-TTSSCCCCSEEEEEEEEE
T ss_pred hccc--cCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccH-HHhhcccccEEEEEEEEE
Confidence 4566 55999999999999 9998888888899999999999 888899889999999886
No 201
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=89.00 E-value=1.8 Score=39.73 Aligned_cols=63 Identities=8% Similarity=0.096 Sum_probs=51.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcc-CCCCC-ceEEEe-C----CeeCCC-CCCcccCCCCCCCCeEEEEeeec
Q 017480 17 TTLTVGANQFETLNHLKRSLLSL-DQSLS-SLYFTL-N----GKILDE-STPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~-gi~~~-~q~Li~-~----Gk~L~D-~~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
..+++..+..+||.+|+.++... +|+.+ +.||-. . ...|+| +.+| .+++|..+..|-|.+|..
T Consensus 152 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl-~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 152 NVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTI-QDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBT-TTTTCCTTEEEEEEECCT
T ss_pred ceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCH-HHhCCCCCCEEEEEEecC
Confidence 34567778899999999999999 99987 688854 3 345665 5899 999999999998888764
No 202
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=88.99 E-value=0.28 Score=48.75 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=86.3
Q ss_pred CCCCCCCCeEEEE-----eeecCCCCCCccccccchhhhhhhhccCCCCCCCcchhcccCCccccCCCCCCCCCeeeCCC
Q 017480 64 NPQIAPLSTLYLR-----QRVFGGGGDGGATGAESRDCYLNMYAEKKPDKIDPNEQRLSKWCNCALSNEPLREPCVIDKL 138 (371)
Q Consensus 64 ~~~I~~~sTL~L~-----lrL~G~~~~~~si~a~~rd~~l~~~~~kk~ek~d~~e~~~~~w~~CaLS~~PL~~PIV~~~l 138 (371)
+...+.-..|.++ ..++|-.++-|+. .+.| +.. |.+ ... ..|.. ..-| +.+.. .=++++++
T Consensus 136 ~i~fP~~~eI~VNg~~vk~n~rGlKnk~Gt~--~PvD-IT~-~lr-~~~--~~N~I-~i~y---~~~~~---~Y~i~v~l 201 (371)
T 3i2d_A 136 PIQFPFPNELRCNNVQIKDNIRGFKSKPGTA--KPAD-LTP-HLK-PYT--QQNNV-ELIY---AFTTK---EYKLFGYI 201 (371)
T ss_dssp CCCCCSSEEEEETTEECCSCCSSCTTSCGGG--SCEE-CGG-GCC-CSS--SCEEE-EEEE---EEESS---CEEEEEEE
T ss_pred CeecCCceEEEECCEEeccccccCCCCCCCc--CCCC-chh-hhc-cCC--CCcEE-EEEE---ecccc---eEEEEEEE
Confidence 3455544445443 2478889999986 5666 333 221 111 11221 1223 22332 12445566
Q ss_pred CceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCC--CCCCceeEcCCcccccCCceeEEEEeccCcc--c
Q 017480 139 GTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEE--NGDGIRFQCPITGLEFNGKYRFVAMRTCGHV--L 214 (371)
Q Consensus 139 G~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~--~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V--~ 214 (371)
=+.+.-+.|++.|+.+...... + . .+.|.-.+..+++.+- ......+.||++...|.-=.|. ..|-|+ |
T Consensus 202 Vk~~s~e~Ll~~I~~~~~i~~e-~--t-l~~Ik~~ls~d~DdDIv~~s~~vSL~CPlS~~ri~~PvRg---~~C~HlQCF 274 (371)
T 3i2d_A 202 VEMITPEQLLEKVLQHPKIIKQ-A--T-LLYLKKTLREDEEMGLTTTSTIMSLQCPISYTRMKYPSKS---INCKHLQCF 274 (371)
T ss_dssp EEECCHHHHHHHHHTSCCBCHH-H--H-HHHHHHHHHSCC------CEEEEESBCTTTSSBCSSEEEE---TTCCSSCCE
T ss_pred EEecCHHHHHHHHHhcCCCCHH-H--H-HHHHHHHhccCCCCceeeeeeEEeecCCCccccccccCcC---CcCCCcceE
Confidence 6778899999999875322110 0 0 0111111221111100 0113457999999998754444 479998 7
Q ss_pred cHHHHHHhh----cCCCCCCCCCcCCCceEE
Q 017480 215 STKALKEVK----SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 215 Se~alkevk----~~~CpvCg~~f~~~DiI~ 241 (371)
...++=++. .+.||+|++.+..+|+++
T Consensus 275 Dl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 275 DALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp EHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred CHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 777776663 689999999999888654
No 203
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=88.94 E-value=0.33 Score=46.24 Aligned_cols=38 Identities=16% Similarity=0.357 Sum_probs=32.2
Q ss_pred cccCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHH
Q 017480 115 RLSKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALL 152 (371)
Q Consensus 115 ~~~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL 152 (371)
.......|.||++++.+||++-.-|+.|.+++|.+|+-
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHST
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHH
Confidence 34567789999999999977646799999999999953
No 204
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=88.67 E-value=0.62 Score=34.73 Aligned_cols=33 Identities=18% Similarity=0.544 Sum_probs=29.6
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHH
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALL 152 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL 152 (371)
-..|+|+++++.+|++. .-|+.|.++.|.+||.
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~fc~~Ci~~~~~ 40 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQTYERSSIQKWLD 40 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEEEEHHHHHHHHT
T ss_pred cCCCCCccccccCCEEc-CCCCeecHHHHHHHHH
Confidence 46799999999999665 7999999999999985
No 205
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=88.51 E-value=1 Score=41.03 Aligned_cols=64 Identities=9% Similarity=0.148 Sum_probs=51.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CCCCC-ceEEE--e-C--CeeCCC-CCCcccCCCCCCCCeEEEEeeecCC
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQSLS-SLYFT--L-N--GKILDE-STPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~-~q~Li--~-~--Gk~L~D-~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.+++.++-.+||.+|+.++... +|+.+ +.||- + . ...|+| +.|| .+++|..+..|-|.+|...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl-~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTI-QDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBH-HHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCH-HHhCCCCCCEEEEEEecCCC
Confidence 4677888899999999999999 99987 68884 3 2 345665 5799 99999999999888886543
No 206
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=86.77 E-value=2 Score=45.25 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=51.8
Q ss_pred ceEEEEEcCCC-CeeeEEEEcCCCCCHHHHHHHHhcc---CCCC------CceEEEe-C---Ce-eCCCC----------
Q 017480 4 KTQIFIKSPSN-SLTTLTVGANQFETLNHLKRSLLSL---DQSL------SSLYFTL-N---GK-ILDES---------- 58 (371)
Q Consensus 4 ~MQIFVk~~~g-~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~------~~q~Li~-~---Gk-~L~D~---------- 58 (371)
.|.|+|=.+++ ....+.+.|-..|||.|+|++|.+. |+|. +++-|-+ . |+ .|.|.
T Consensus 233 ~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~w 312 (627)
T 3ig3_A 233 TLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDW 312 (627)
T ss_dssp EEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTE
T ss_pred eEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCce
Confidence 45666655442 2246778888899999999999876 5654 4556644 2 33 35441
Q ss_pred ---CCcccCCCCCCCCeEEEEeee
Q 017480 59 ---TPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 59 ---~tL~~~~~I~~~sTL~L~lrL 79 (371)
-|| ++|+|++++||.|+.|.
T Consensus 313 krLNTL-~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 313 KRVNSL-AHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp EECCBT-TTTTCCTTCEEEEEEC-
T ss_pred eEecch-hhcCCCCCceEEEEecc
Confidence 378 99999999999998875
No 207
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.67 E-value=0.48 Score=46.91 Aligned_cols=101 Identities=21% Similarity=0.320 Sum_probs=60.3
Q ss_pred eeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCC--CCCCceeEcCCcccccCCceeEEEEeccC
Q 017480 134 VIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEE--NGDGIRFQCPITGLEFNGKYRFVAMRTCG 211 (371)
Q Consensus 134 V~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~--~~~~~~~~CPVT~~e~ng~~rfV~L~~CG 211 (371)
+++++=+-+.-+.||+.|+.+...+. .|. +++|.-+|+.+++.+- ......+.||++...|.-=.|. ..|-
T Consensus 163 l~V~lV~~~s~~~Llq~l~~k~~~~~-e~t---~~~Ik~~l~~d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg---~~C~ 235 (360)
T 4fo9_A 163 MSVYLVRQLTSAMLLQRLKMKGIRNP-DHS---RALIKEKLTADPDSEIATTSLRVSLMCPLGKMRLTIPCRA---VTCT 235 (360)
T ss_dssp EEEEEEEECCHHHHHHHHHTC-CBCH-HHH---HHHHHHHHC---------CCEEEESBCTTTCSBCSSEEEE---TTCC
T ss_pred EEEEEEEeCCHHHHHHHHHhcCCCCH-HHH---HHHHHHHhccCCccceeeeeeEEeeeCCCccceeccCCcC---CCCC
Confidence 44455566789999999987643221 110 1122222322221110 0113457899999998754444 4799
Q ss_pred cc--ccHHHHHHhh----cCCCCCCCCCcCCCceEE
Q 017480 212 HV--LSTKALKEVK----SSSCLVCHEEFGEMDKIL 241 (371)
Q Consensus 212 ~V--~Se~alkevk----~~~CpvCg~~f~~~DiI~ 241 (371)
|+ |...++=++. .+.||+|++.+.-+|+++
T Consensus 236 HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 236 HLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp CCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred CCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 98 7777777664 589999999999888653
No 208
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=86.27 E-value=2.5 Score=41.01 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=58.0
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-C----CCCCceEEEe------CCeeCCCCCCcccCCCCCCCCeE
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-D----QSLSSLYFTL------NGKILDESTPLFKNPQIAPLSTL 73 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-g----i~~~~q~Li~------~Gk~L~D~~tL~~~~~I~~~sTL 73 (371)
+-|-|.-. + .+-++..+++.||.++-.+|.++ . .++++.-|.. .|.+|+++.+| ..|+++++..|
T Consensus 4 ~~~~~~~~-~--~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l-~~y~~~~~~~l 79 (371)
T 3ivf_A 4 LSLKISIG-N--VVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKAL-DYYMLRNGDTM 79 (371)
T ss_dssp EEEEEEET-T--EEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBG-GGGTCCTTCEE
T ss_pred EEEEEEec-c--eeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCH-HHhCCCCCcee
Confidence 44555555 4 35678888899999999998777 2 2677877776 57899999999 99999999887
Q ss_pred EEE-------eeecCCC
Q 017480 74 YLR-------QRVFGGG 83 (371)
Q Consensus 74 ~L~-------lrL~G~~ 83 (371)
+.. +.|.+|.
T Consensus 80 ~~~~~~~~~~V~l~dg~ 96 (371)
T 3ivf_A 80 EYRKKQRPLKIRMLDGT 96 (371)
T ss_dssp EEEECEEEEEEECTTSC
T ss_pred eccCceeEEEEECcCCC
Confidence 765 6777664
No 209
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=86.18 E-value=1.9 Score=45.44 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=50.4
Q ss_pred ceEEEEEcCCC----CeeeEEEEcCCCCCHHHHHHHHhcc---CCCCC------ceEEEe----CCe-eCCCC-------
Q 017480 4 KTQIFIKSPSN----SLTTLTVGANQFETLNHLKRSLLSL---DQSLS------SLYFTL----NGK-ILDES------- 58 (371)
Q Consensus 4 ~MQIFVk~~~g----~~~t~~l~v~~~~TV~~lK~~i~~~---gi~~~------~q~Li~----~Gk-~L~D~------- 58 (371)
.|.|.|=...| ....+.+.|-..|||.|+|++|.+. |+|.+ ++.|-+ .|+ .|.|.
T Consensus 257 ~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 336 (644)
T 3hm6_X 257 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQ 336 (644)
T ss_dssp EEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEE
T ss_pred eEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceec
Confidence 35566544332 1245778888899999999999965 66654 445544 233 35442
Q ss_pred ------CCcccCCCCCCCCeEEEEeeec
Q 017480 59 ------TPLFKNPQIAPLSTLYLRQRVF 80 (371)
Q Consensus 59 ------~tL~~~~~I~~~sTL~L~lrL~ 80 (371)
-|| ++|+|++++||.|+.+.-
T Consensus 337 ~~wkrLNTL-~HY~V~dga~v~L~p~~~ 363 (644)
T 3hm6_X 337 GLWRRLNTL-QHYKVPDGATVALVPCLT 363 (644)
T ss_dssp TTEEECCBT-TTTTCCTTCEEEEEEC--
T ss_pred Ccceeecch-hhcCCCCCcEEEEEeccc
Confidence 389 999999999999877653
No 210
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.86 E-value=0.58 Score=36.23 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=37.4
Q ss_pred eeEcCCcccccCCceeEEEEeccC-----ccccHHHHHHhh----cCCCCCCCCCcCCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCG-----HVLSTKALKEVK----SSSCLVCHEEFGEM 237 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG-----~V~Se~alkevk----~~~CpvCg~~f~~~ 237 (371)
.-.|+|+..++.....+ +.||+ |.|-..+|.+.- ...||+|..+|.-.
T Consensus 15 ~~~C~IC~~~~~~~~~l--~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL--ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp SCCCSSSCCCCCSSSCE--ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCeEcCccccCCCee--EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 45799999888644444 47996 999999999973 25899999999754
No 211
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=85.80 E-value=0.6 Score=51.58 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=40.0
Q ss_pred ccCCccccCCCCCCCCCeeeCCCC-ceecHHHHHHHHHcCCCCCccCccCCCCCcee
Q 017480 116 LSKWCNCALSNEPLREPCVIDKLG-TIFNKEALVHALLSKNLPKQYSYIKGLKDLIN 171 (371)
Q Consensus 116 ~~~w~~CaLS~~PL~~PIV~~~lG-~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~ 171 (371)
.-.+..|.||++..++||+. ..| .-|++++|.+||+.....|.++.+.+..||++
T Consensus 888 iP~~F~cPIs~~lM~DPVil-psG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVIL-PASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEEC-TTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred CcHHhCCcchhhHHhCCeEc-CCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc
Confidence 34578999999999999665 676 68999999999986444444444444444443
No 212
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=85.61 E-value=1.5 Score=36.76 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=50.4
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc--CCCCCceEEE--eCCeeCCC-CCCcccCCCCCCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL--DQSLSSLYFT--LNGKILDE-STPLFKNPQIAPLS 71 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~--gi~~~~q~Li--~~Gk~L~D-~~tL~~~~~I~~~s 71 (371)
..|-||..+|. .+.-....++||.+|.+.|... +.....|.|+ |-.+.|+| +.|| .+.||.+..
T Consensus 53 t~IqIRlpdG~--rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL-~eagL~psa 121 (127)
T 1s3s_G 53 TNIQIRLADGG--RLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTL-KEANLLNAV 121 (127)
T ss_dssp CCEEEEETTTT--EEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBH-HHHTCSSCE
T ss_pred EEEEEECCCCC--EEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcH-HHCCCcCce
Confidence 56889999997 4555666788999999999885 4566778886 45788865 6899 999999854
No 213
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=84.30 E-value=6 Score=31.19 Aligned_cols=61 Identities=10% Similarity=0.099 Sum_probs=50.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHhcc--C--C---CCCceEEEeCC--eeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 16 LTTLTVGANQFETLNHLKRSLLSL--D--Q---SLSSLYFTLNG--KILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 16 ~~t~~l~v~~~~TV~~lK~~i~~~--g--i---~~~~q~Li~~G--k~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
...+-|-|+..+|+.++-++++.- | + |-.-.++.++| .+|..+.|+ ++.||.+...|++..
T Consensus 12 FV~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tv-ae~gl~P~e~vev~~ 81 (83)
T 2inc_C 12 FVIQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIV-SDAGLRPTETLDIIF 81 (83)
T ss_dssp SBEEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBG-GGSCCCTTCEEEEEE
T ss_pred cEEEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEe-eccCCCCceEEEEEE
Confidence 345667888899999999998876 5 3 22246788999 999999999 999999999988764
No 214
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=84.19 E-value=2.1 Score=36.33 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=40.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcc-----CCCC----CceEEEe-C---CeeCCC--C------------CCcccCCCCCC
Q 017480 17 TTLTVGANQFETLNHLKRSLLSL-----DQSL----SSLYFTL-N---GKILDE--S------------TPLFKNPQIAP 69 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~-----gi~~----~~q~Li~-~---Gk~L~D--~------------~tL~~~~~I~~ 69 (371)
..+.+.|-..|||.|+|++|... |.|. +++.|-+ . |.+|.| . -|| +.|+|++
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL-~HY~V~D 117 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTI-GHYEISN 117 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBT-GGGTCCT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccc-cccCCCC
Confidence 45778888889999999998754 4443 4555543 1 233432 1 267 7899999
Q ss_pred CCeEEEE
Q 017480 70 LSTLYLR 76 (371)
Q Consensus 70 ~sTL~L~ 76 (371)
++||.|.
T Consensus 118 gatlal~ 124 (126)
T 3kuz_A 118 GSTIKVF 124 (126)
T ss_dssp TCEEEEE
T ss_pred CCEEEEe
Confidence 9998774
No 215
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=84.07 E-value=4.5 Score=31.90 Aligned_cols=74 Identities=9% Similarity=0.090 Sum_probs=47.4
Q ss_pred CcceEEEEEcCC------CCeeeEEEEcCCCCCHHHHHHHHhcc--CCC----------CCceEEEeCCeeCCCCCCccc
Q 017480 2 RSKTQIFIKSPS------NSLTTLTVGANQFETLNHLKRSLLSL--DQS----------LSSLYFTLNGKILDESTPLFK 63 (371)
Q Consensus 2 ~~~MQIFVk~~~------g~~~t~~l~v~~~~TV~~lK~~i~~~--gi~----------~~~q~Li~~Gk~L~D~~tL~~ 63 (371)
+.+|+|-||-.. |. ....+++.+..||.+|.+.|... ++. .....+..||+....+.
T Consensus 7 ~~~~~v~V~~FA~lre~~g~-~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~---- 81 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGV-DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDE---- 81 (98)
T ss_dssp --CEEEEEEECTHHHHHHSS-SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTC----
T ss_pred cCcEEEEEEEhHHHHHHhCC-CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCC----
Confidence 456888887543 31 24567777778999999988764 121 23456788998876543
Q ss_pred CCCCCCCCeEEEEeeecCC
Q 017480 64 NPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 64 ~~~I~~~sTL~L~lrL~G~ 82 (371)
-|.+++.|.+...+-||
T Consensus 82 --~L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 82 --ELKDGDVVGVFPPVSGG 98 (98)
T ss_dssp --BCCTTCEEEEESCC---
T ss_pred --CCCCCCEEEEECCCCCC
Confidence 46888999887666554
No 216
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=83.00 E-value=1.2 Score=35.03 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=50.8
Q ss_pred eEEEEEc--CCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCC-----CceEEEeCCeeCCCCCCcccCCCCCCCCeEEE
Q 017480 5 TQIFIKS--PSNSLTTLTVGANQFETLNHLKRSLLSL-DQSL-----SSLYFTLNGKILDESTPLFKNPQIAPLSTLYL 75 (371)
Q Consensus 5 MQIFVk~--~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~-----~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L 75 (371)
+.|-|.- -.++ ++.|.++-..||..|..-|.+. +++. .+.++.--|..|.++.+| ++|+|..|+.|.+
T Consensus 5 I~ITidl~~y~~~--~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L-~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGS--VFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKL-SDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCC--EEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBT-GGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCc--eEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEE-eeCCcCCCCEEEE
Confidence 3444442 3554 7888998899999999988877 6532 245556667778899999 9999999998864
No 217
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=82.84 E-value=2.1 Score=32.95 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=43.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhccC--CCC----------CceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 18 TLTVGANQFETLNHLKRSLLSLD--QSL----------SSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~g--i~~----------~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
...+++.+..||.+|.+.|.... +.. ....+..||+....+.. |.+++.|.+..++-||
T Consensus 19 ~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~------l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 19 TVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEA------TAAGDELALFPPVSGG 89 (89)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSB------CCTTCEEEEECCCSCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcc------cCCCCEEEEECCCCCC
Confidence 46788877789999999987762 210 12577789998876543 5888999988888776
No 218
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=81.73 E-value=11 Score=30.99 Aligned_cols=78 Identities=9% Similarity=0.088 Sum_probs=49.0
Q ss_pred CCcceEEEEEcCC------CCeeeEEEEcCC---CCCHHHHHHHHhcc--CCCC------C----ceEEEeCCeeCC--C
Q 017480 1 MRSKTQIFIKSPS------NSLTTLTVGANQ---FETLNHLKRSLLSL--DQSL------S----SLYFTLNGKILD--E 57 (371)
Q Consensus 1 ~~~~MQIFVk~~~------g~~~t~~l~v~~---~~TV~~lK~~i~~~--gi~~------~----~q~Li~~Gk~L~--D 57 (371)
|..+|+|-|+-.. |....+.|++.+ ..||.+|-..|.+. ++.. . ...++.||+..+ +
T Consensus 8 ~~~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~ 87 (114)
T 1wgk_A 8 MAAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLG 87 (114)
T ss_dssp CCCCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHC
T ss_pred cCCCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccC
Confidence 5567888887543 332355688773 35999998888765 2210 1 123455665322 1
Q ss_pred CCCcccCCCCCCCCeEEEEeeecCC
Q 017480 58 STPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 58 ~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
+ .+|-|++++.|.+...+-||
T Consensus 88 g----ldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 88 E----LDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp T----TTCBCCSSEEEEEEECSCCC
T ss_pred C----cCcCCCCCCEEEEeCCCCCC
Confidence 2 35678999999887777777
No 219
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=81.51 E-value=4.3 Score=30.40 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=40.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhccC------CCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 18 TLTVGANQFETLNHLKRSLLSLD------QSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~g------i~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
..+++ .+..||.+|.+.|.... ++.....+..||+....+. -|.+++.|.+..++-||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~------~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDH------PLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTC------BCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCC------CCCCCCEEEEeCCCCCC
Confidence 34565 45679999999887551 3334567888999876544 46888999887776665
No 220
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.91 E-value=1.5 Score=33.62 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=36.0
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHHhh----cCCCCCCCCCcCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK----SSSCLVCHEEFGE 236 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk----~~~CpvCg~~f~~ 236 (371)
.-.|+|+...+....+.. .|||.|-..+|...- ...||.|..+|..
T Consensus 15 i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 347999999886543332 899999999999862 2689999998864
No 221
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=80.69 E-value=2.3 Score=46.96 Aligned_cols=66 Identities=15% Similarity=0.062 Sum_probs=49.6
Q ss_pred CceeEcCCcccccCCceeEEEEeccC-ccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHHHHh
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCG-HVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLK 262 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG-~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~ak 262 (371)
...|+||||..-|..= | +-|+| +.+-..++.+. ....||..+.+++..|+|+ + -.||.++++-...
T Consensus 889 P~~F~cPIs~~lM~DP---V-ilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP---N----~~Lk~~I~~w~~~ 957 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---V-ILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP---N----EELRQKILCFKKQ 957 (968)
T ss_dssp CGGGBCTTTCSBCSSE---E-ECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE---C----HHHHHHHHHHHHH
T ss_pred cHHhCCcchhhHHhCC---e-EcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc---c----HHHHHHHHHHHHH
Confidence 3579999999999862 3 35787 68999999986 4678999999999888875 2 2466666654433
No 222
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=80.42 E-value=5.9 Score=37.23 Aligned_cols=76 Identities=4% Similarity=-0.097 Sum_probs=55.3
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC-CCCceEEEe--CC--eeCCCCCCcccCCCCCCCCeEE
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ-SLSSLYFTL--NG--KILDESTPLFKNPQIAPLSTLY 74 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi-~~~~q~Li~--~G--k~L~D~~tL~~~~~I~~~sTL~ 74 (371)
|+..|.+-|..++| ++.+++++..|+.+|=..|... |+ ..+-|-|.| .| .+|+.+.+| .+..+.....+.
T Consensus 19 ~~~~~~~~V~lldg---~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i-~~q~~~~~~~~~ 94 (314)
T 1h4r_A 19 QPKTFTVRIVTMDA---EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKV-LDHDVSKEEPVT 94 (314)
T ss_dssp --CEEEEEEECSSC---EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBG-GGSSCCCSSSEE
T ss_pred CCCeeEEEEEeCCc---eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCH-HHcCCCCCCCEE
Confidence 34568899999999 4668888889999999999999 86 455566666 33 468888888 776666566665
Q ss_pred EEeeec
Q 017480 75 LRQRVF 80 (371)
Q Consensus 75 L~lrL~ 80 (371)
|.+|.+
T Consensus 95 l~fr~k 100 (314)
T 1h4r_A 95 FHFLAK 100 (314)
T ss_dssp EEEEES
T ss_pred EEEEEE
Confidence 666554
No 223
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=79.67 E-value=1.3 Score=33.71 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=38.0
Q ss_pred EEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 20 TVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 20 ~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.+++.+..||.+|.+. ++++.....+..||+.+..+.. |.+++.|.+.-.+-||
T Consensus 24 ~~~~~~~~Tv~dLl~~---L~~~~~~v~VavNg~~v~~~~~------L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRA---VGFNTESAIAKVNGKVVLEDDE------VKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHT---TTCSSCSSCEEETTEEECSSSC------CCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHH---hCCCCcCEEEEECCEECCCCCC------cCCCCEEEEEcccccC
Confidence 4566667899999554 3566677778889998876643 5788888765555443
No 224
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=79.66 E-value=0.55 Score=35.98 Aligned_cols=61 Identities=18% Similarity=0.325 Sum_probs=39.9
Q ss_pred eEcCCcccc-cC-CceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCceEEecCChHHHHHHHHHHHHHHHh
Q 017480 189 FQCPITGLE-FN-GKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKILINGNEEEISVLRERMEEEKLK 262 (371)
Q Consensus 189 ~~CPVT~~e-~n-g~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~DiI~Lnp~~ee~~~l~~rm~~~~ak 262 (371)
-.||+++.. +. +...+.+-+ =|+.+ .++.|....|+.||+.|-. .|+.+++.+.|.+.+++
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~-~G~~~---~I~~Vp~~~C~~CGE~~~~---------~e~~~~~~~~~~~f~~~ 65 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTF-RGRKT---VLKGIHGLYCVHCEESIMN---------KEESDAFMAQVKAFRAS 65 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEE-TTEEE---EEEEEEEEEETTTCCEECC---------HHHHHHHHHHHHHHHHH
T ss_pred eECCCCCCCeeEeEEEEEEEEE-CCEEE---EEcCceeEECCCCCCEEEC---------HHHHHHHHHHHHHHHHH
Confidence 369999853 54 333444444 35543 4456677899999998764 46677777777766554
No 225
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=79.05 E-value=6.5 Score=31.03 Aligned_cols=76 Identities=9% Similarity=0.083 Sum_probs=44.7
Q ss_pred eEEEEE------cCCCCeeeEEEEcC--CCCCHHHHHHHHhcc-C-CCCC------------ceEEEeCCeeCCCCCCcc
Q 017480 5 TQIFIK------SPSNSLTTLTVGAN--QFETLNHLKRSLLSL-D-QSLS------------SLYFTLNGKILDESTPLF 62 (371)
Q Consensus 5 MQIFVk------~~~g~~~t~~l~v~--~~~TV~~lK~~i~~~-g-i~~~------------~q~Li~~Gk~L~D~~tL~ 62 (371)
|+|-|| ...|....+++++. +..||.+|.+.|.+. . .... ...+.-||...+-...
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~-- 79 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGE-- 79 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTG--
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCC--
Confidence 666655 33322245667765 568999999998876 2 2111 1135567764220000
Q ss_pred cCCCCCCCCeEEEEeeecCC
Q 017480 63 KNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 63 ~~~~I~~~sTL~L~lrL~G~ 82 (371)
.++-|+++++|.+..++-||
T Consensus 80 ~d~~L~dgDeVa~~Ppv~GG 99 (99)
T 2qjl_A 80 KDYILEDGDIISFTSTLHGG 99 (99)
T ss_dssp GGCBCCTTCEEEEEECTTCC
T ss_pred CCcCcCCCCEEEEECCCCCC
Confidence 23557899999888777765
No 226
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=78.65 E-value=6.2 Score=41.06 Aligned_cols=76 Identities=9% Similarity=0.061 Sum_probs=56.8
Q ss_pred CCcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC-CCCceEEEeCC-----eeCCCCCCcccCCCCCCCCeE
Q 017480 1 MRSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ-SLSSLYFTLNG-----KILDESTPLFKNPQIAPLSTL 73 (371)
Q Consensus 1 ~~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi-~~~~q~Li~~G-----k~L~D~~tL~~~~~I~~~sTL 73 (371)
|...|.+-|..++| ++.+.+++..|+.+|=..|... |+ ..+-|-|.|-. .+|+.+.+| .+.++.....+
T Consensus 1 ~~k~i~v~V~llDg---t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i-~~q~~~~~~~~ 76 (575)
T 2i1j_A 1 MPKSMNVRVTTMDA---ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKV-MQQDVKKENPL 76 (575)
T ss_dssp --CEEEEEEECSSC---EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBG-GGSCBCCCSSE
T ss_pred CCceEEEEEEeCCC---eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccH-HHhcccCCCCe
Confidence 78889999999999 4668888889999999999999 96 44567776632 578888888 77666666666
Q ss_pred EEEeeec
Q 017480 74 YLRQRVF 80 (371)
Q Consensus 74 ~L~lrL~ 80 (371)
.|.+|.+
T Consensus 77 ~L~FRvk 83 (575)
T 2i1j_A 77 QFKFRAK 83 (575)
T ss_dssp EEEEEES
T ss_pred EEEEEEE
Confidence 6666654
No 227
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=78.32 E-value=3.5 Score=30.02 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=40.1
Q ss_pred EEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 20 TVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 20 ~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.+++ +..||.+|...+ +++.....+..||..+..+. +.+.-|.+++.|.+...+-||
T Consensus 8 ~~~~-~~~tv~~ll~~l---~~~~~~v~vavN~~~v~~~~--~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 8 PRPL-EGKTLKEVLEEM---GVELKGVAVLLNEEAFLGLE--VPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp EECC-TTCCHHHHHHHH---TBCGGGEEEEETTEEEEGGG--CCCCCCCTTCEEEEEECCCC-
T ss_pred EEEc-CCCcHHHHHHHc---CCCCCcEEEEECCEECCccc--cCCcCCCCCCEEEEEeecccC
Confidence 4566 568999997765 45667778889999886442 145568999999876655543
No 228
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.54 E-value=4.4 Score=29.63 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=31.4
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
...|++..+.+.+|++...=|+.|-++-|.+||..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH
T ss_pred CCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc
Confidence 46799999999999877688999999999999965
No 229
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=77.10 E-value=6.1 Score=31.21 Aligned_cols=63 Identities=3% Similarity=0.082 Sum_probs=50.8
Q ss_pred CCeeeEEEEcCCCCCHHHHHHHHhcc--CC----CCCceEEEeCCee--CCCCCCcccCCCCCCCCeEEEEe
Q 017480 14 NSLTTLTVGANQFETLNHLKRSLLSL--DQ----SLSSLYFTLNGKI--LDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 14 g~~~t~~l~v~~~~TV~~lK~~i~~~--gi----~~~~q~Li~~Gk~--L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
|....+-|-|+..+|+.++-++++.- |. .+.-.++.++|.. |..+.|+ ++.||.+...|++..
T Consensus 12 gDFv~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtV-aeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 12 KDFLVQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTI-AESGLNPTEVIDVVF 82 (84)
T ss_dssp TCSBEEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBH-HHHCCCTTCEEEEEE
T ss_pred cccEEEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEe-eccCCCcceEEEEEE
Confidence 33345567788899999999998876 63 2236788999999 9999999 999999999998754
No 230
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=77.00 E-value=1 Score=38.80 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=37.7
Q ss_pred CCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCC-CCCccCccCCCCCcee
Q 017480 118 KWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKN-LPKQYSYIKGLKDLIN 171 (371)
Q Consensus 118 ~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~-~~~~~~HIksLKDlv~ 171 (371)
....|++..++|..||. +.-|+.|-+.-|.+||.... .=|......+..++++
T Consensus 17 ~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 17 SKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp GGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 34679999999999955 68999999999999997643 2233333334444544
No 231
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=75.32 E-value=0.29 Score=34.74 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=21.9
Q ss_pred ccCccccHHHHHHhhcCCCCCCCCC
Q 017480 209 TCGHVLSTKALKEVKSSSCLVCHEE 233 (371)
Q Consensus 209 ~CG~V~Se~alkevk~~~CpvCg~~ 233 (371)
.||.+|+..-|+-+..-.||.||=.
T Consensus 8 rCg~~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 8 KCWKTFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp CTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred ccCCCccHHHHhhCCCcccCccCcE
Confidence 4999999998888889999999853
No 232
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=74.02 E-value=1.8 Score=30.57 Aligned_cols=37 Identities=27% Similarity=0.540 Sum_probs=25.8
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHh----hcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV----KSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev----k~~~CpvCg~~f~~~ 237 (371)
..+|.||++++.|... ..|..+ +...|+.||+.|...
T Consensus 12 ~k~~~C~~C~k~F~~~---------------~~l~~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDL---------------EANQLFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SSEEECSSSCCEEEHH---------------HHHHHEETTTTEEBCSSSCCBCEEC
T ss_pred CCCccCCCCCchhccH---------------HHhHhhcCCCCCEECCCCCCccccC
Confidence 5689999999887532 222222 346899999999754
No 233
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=73.21 E-value=3.8 Score=30.46 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=40.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhccCCCCCce--EEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 18 TLTVGANQFETLNHLKRSLLSLDQSLSSL--YFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~gi~~~~q--~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
...+++.+..||.+|.+.+....-..... .+..||+....+.. |.+++.|.+.-.+-||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~------L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDF------IQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSE------ECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCC------cCCCCEEEEECCCCCC
Confidence 34566666789999999876542011233 68889998876543 5788999876655544
No 234
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=73.08 E-value=7.2 Score=28.42 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=38.6
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEe
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
|+|+|...+|. ..++....|+.+|-..+... ++..-.....+|+..+-+.. |..+++|.+.-
T Consensus 1 m~i~i~~p~g~----~~~~~~g~T~~dla~~i~~~-l~~~~vaa~vNg~lvdl~~~------L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGE----IKRLPQGATALDFAYSLHSD-LGDHCIGAKVNHKLVPLSYV------LNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCC----EEEECTTCBHHHHHHHHCSH-HHHTEEEEEETTEECCTTCB------CCSSSBEEEEE
T ss_pred CeEEEEcCCCC----EEEcCCCCcHHHHHHHHhhc-cccceEEEEECCEEeCCCcC------cCCCCEEEEEE
Confidence 67778777886 35666678999997766321 11122333568887665544 45667777643
No 235
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=70.16 E-value=17 Score=33.65 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC-CCCceEEEe---CC--eeCCCCCCcccCCCCCCCCeEEEE
Q 017480 4 KTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ-SLSSLYFTL---NG--KILDESTPLFKNPQIAPLSTLYLR 76 (371)
Q Consensus 4 ~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi-~~~~q~Li~---~G--k~L~D~~tL~~~~~I~~~sTL~L~ 76 (371)
+|.|-|..++| ++.+++++..|+.+|=..|... |+ ..+-|-|.+ +| .+|+.+.+| .+.++.......|.
T Consensus 1 ~i~~~V~l~d~---~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l-~~q~~~~~~~~~l~ 76 (294)
T 1ef1_A 1 TISVRVTTMDA---ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKV-TAQDVRKESPLLFK 76 (294)
T ss_dssp CEEEEEEETTE---EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBG-GGSCBCCCSSEEEE
T ss_pred CEEEEEEECCc---eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCH-HhhccCCCCCEEEE
Confidence 37888999998 4678888899999999999999 96 445566765 23 367878888 66655555555555
Q ss_pred eeec
Q 017480 77 QRVF 80 (371)
Q Consensus 77 lrL~ 80 (371)
+|.+
T Consensus 77 fr~k 80 (294)
T 1ef1_A 77 FRAK 80 (294)
T ss_dssp EEES
T ss_pred EEEE
Confidence 5544
No 236
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=67.41 E-value=2.1 Score=37.78 Aligned_cols=28 Identities=29% Similarity=0.524 Sum_probs=18.2
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCc
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEF 234 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f 234 (371)
...|+||+||....+ +. ...||+||.+=
T Consensus 136 ~~~~~C~~CG~i~~~--------------------~~-p~~CP~Cg~~~ 163 (170)
T 3pwf_A 136 KKVYICPICGYTAVD--------------------EA-PEYCPVCGAPK 163 (170)
T ss_dssp SCEEECTTTCCEEES--------------------CC-CSBCTTTCCBG
T ss_pred CCeeEeCCCCCeeCC--------------------CC-CCCCCCCCCCH
Confidence 467999987653321 22 24899999763
No 237
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=66.02 E-value=1.6 Score=39.03 Aligned_cols=27 Identities=19% Similarity=0.549 Sum_probs=18.9
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCC
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEE 233 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~ 233 (371)
..|+|++||....|. ++ ...||+||.+
T Consensus 154 ~~~~C~~CG~~~~g~-------------------~~-p~~CP~C~~~ 180 (191)
T 1lko_A 154 TKWRCRNCGYVHEGT-------------------GA-PELCPACAHP 180 (191)
T ss_dssp EEEEETTTCCEEEEE-------------------EC-CSBCTTTCCB
T ss_pred ceEEECCCCCEeeCC-------------------CC-CCCCCCCcCC
Confidence 479999988765432 12 2389999986
No 238
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=65.22 E-value=2.7 Score=37.97 Aligned_cols=27 Identities=26% Similarity=0.614 Sum_probs=19.8
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEE 233 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~ 233 (371)
...|+|++||....|. ....||+||.+
T Consensus 169 ~~~~~C~~CG~i~~g~---------------------~p~~CP~C~~~ 195 (202)
T 1yuz_A 169 DKFHLCPICGYIHKGE---------------------DFEKCPICFRP 195 (202)
T ss_dssp CCEEECSSSCCEEESS---------------------CCSBCTTTCCB
T ss_pred CcEEEECCCCCEEcCc---------------------CCCCCCCCCCC
Confidence 4689999998765431 12799999976
No 239
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=63.53 E-value=7.1 Score=30.59 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=31.5
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k 154 (371)
-..|++.+..+..|+++..=|+.|.++-|.+||...
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHC
Confidence 367999999999997657889999999999998764
No 240
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=60.24 E-value=4.4 Score=31.82 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=28.2
Q ss_pred eEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCc----eEEecCChHHHHH
Q 017480 203 RFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMD----KILINGNEEEISV 251 (371)
Q Consensus 203 rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~D----iI~Lnp~~ee~~~ 251 (371)
.+-+=+.|+-|..++ .||+|+-.....| ||+++|...++++
T Consensus 22 ~~rAC~~C~~v~~~d--------~CPnCgs~~~T~~w~G~ViI~dPe~S~IAk 66 (81)
T 3p8b_A 22 SEKACRHCHYITSED--------RCPVCGSRDLSEEWFDLVIIVDVENSEIAK 66 (81)
T ss_dssp CCEEETTTCBEESSS--------SCTTTCCCCEESCEEEEEEESCTTTCHHHH
T ss_pred hHHHHhhCCCccCCC--------CCCCCCCCccCCccceEEEEeCChHhHHHH
Confidence 344557888888653 6999986543333 7888898777754
No 241
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=59.81 E-value=25 Score=33.81 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=53.4
Q ss_pred cceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC-CCCceEEEeC---------CeeCCCCCCcccCCCCCCCC
Q 017480 3 SKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ-SLSSLYFTLN---------GKILDESTPLFKNPQIAPLS 71 (371)
Q Consensus 3 ~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi-~~~~q~Li~~---------Gk~L~D~~tL~~~~~I~~~s 71 (371)
..+.+-|..++|. ..++.++...|+.+|=..|... |+ ..+.|-|.+. -.+|+.+.+| .+-++.+..
T Consensus 84 ~~~~~~V~l~dg~--~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l-~~q~~~~~~ 160 (371)
T 3ivf_A 84 KQRPLKIRMLDGT--VKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTL-REQGVEEHE 160 (371)
T ss_dssp CEEEEEEECTTSC--EEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBT-GGGTCCTTC
T ss_pred ceeEEEEECcCCC--EEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchh-HhhCCCCCc
Confidence 3477889999997 5667777788999999999998 85 5666777663 2567767777 655555555
Q ss_pred eEEEEeeec
Q 017480 72 TLYLRQRVF 80 (371)
Q Consensus 72 TL~L~lrL~ 80 (371)
++++..++.
T Consensus 161 ~l~frvKf~ 169 (371)
T 3ivf_A 161 TLLLRRKFF 169 (371)
T ss_dssp EEEEEECCC
T ss_pred eEEEEEEEe
Confidence 666655543
No 242
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=58.97 E-value=7.3 Score=38.61 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=41.0
Q ss_pred ccCCccccCCCCCCCCCeeeCCCCce--ecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCCCCCCceeEcCC
Q 017480 116 LSKWCNCALSNEPLREPCVIDKLGTI--FNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPI 193 (371)
Q Consensus 116 ~~~w~~CaLS~~PL~~PIV~~~lG~L--YnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~~~~~~~~~CPV 193 (371)
..-.-.|.||..++..|+=+-.--+| |+.+++|++... ...|.|||
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~--------------------------------~~~W~CPI 293 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQ--------------------------------IPTWQCPV 293 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHH--------------------------------SCCCBCTT
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhc--------------------------------CCceeCCC
Confidence 34567899999999999777666777 999999987422 24689999
Q ss_pred cccccC
Q 017480 194 TGLEFN 199 (371)
Q Consensus 194 T~~e~n 199 (371)
|.+.+.
T Consensus 294 C~k~~~ 299 (371)
T 3i2d_A 294 CQIDIA 299 (371)
T ss_dssp TCCBCC
T ss_pred CCcccC
Confidence 988764
No 243
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.83 E-value=1.4 Score=31.11 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=27.2
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~ 237 (371)
..+|.|+++++.|.....+.. .+...|+.||+.|...
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~---------------~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR---------------RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC---------------SSSCCCHHHHHTCSCC
T ss_pred CCCeeCCcccchhCCHHHhCc---------------CCCCCCCCCChhhcCH
Confidence 467999999999876443332 3457899999999754
No 244
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=58.49 E-value=20 Score=33.62 Aligned_cols=83 Identities=6% Similarity=0.014 Sum_probs=54.7
Q ss_pred CcceEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CC-CCCceEEEeCC-----eeCCCCCCcccCCCCCCCCeEE
Q 017480 2 RSKTQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQ-SLSSLYFTLNG-----KILDESTPLFKNPQIAPLSTLY 74 (371)
Q Consensus 2 ~~~MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi-~~~~q~Li~~G-----k~L~D~~tL~~~~~I~~~sTL~ 74 (371)
+..|.+-|..++|. .+++++++..|+.+|=..|... |+ ..+-|-|.|.. .+|+.+.+| .+.......+|.
T Consensus 15 ~~~~~~~V~lldgt--~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i-~~q~~~~~~~l~ 91 (296)
T 3qij_A 15 YFQGHCKVSLLDDT--VYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEI-KKQVRGVPWNFT 91 (296)
T ss_dssp --CCEEEEECTTSC--EEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBH-HHHC---CCEEE
T ss_pred CceEEEEEEccCCC--EEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhH-HHhcCCCCcEEE
Confidence 35688999999996 7788999999999999999999 96 44556676532 567877777 544333233455
Q ss_pred EEeeecCCCCCCccc
Q 017480 75 LRQRVFGGGGDGGAT 89 (371)
Q Consensus 75 L~lrL~G~~~~~~si 89 (371)
+.+++- -.|.+.+
T Consensus 92 frvkfy--~~~~~~l 104 (296)
T 3qij_A 92 FNVKFY--PPDPAQL 104 (296)
T ss_dssp EEESSC--CSCGGGS
T ss_pred EEEEEe--CCCchhc
Confidence 544443 3444433
No 245
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=58.23 E-value=2.6 Score=30.36 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=26.2
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHH-------hhcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-------VKSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-------vk~~~CpvCg~~f~~~ 237 (371)
+-+|.|+++++.|.... .|.. .+...|++||+.|...
T Consensus 2 EKpy~C~~C~k~F~~~~---------------~L~~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDAS---------------GLSRHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCCEECTTTCCEESSHH---------------HHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred CCCccCCCCCCEeCCHH---------------HHHHHHHHhCCCcCeECCCCCCCcCCH
Confidence 35799999999887532 2222 2356899999999753
No 246
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.00 E-value=12 Score=26.37 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=30.4
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
...|.+..+.+.+|++. .=|+.|-++-|.+||..
T Consensus 20 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 20 EVICPICLDILQKPVTI-DCGHNFCLKCITQIGET 53 (63)
T ss_dssp CCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH
T ss_pred CCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc
Confidence 46799999999999766 88999999999999974
No 247
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=55.70 E-value=6.7 Score=28.56 Aligned_cols=51 Identities=16% Similarity=0.417 Sum_probs=29.4
Q ss_pred CceeEcCC--cccccCC-------------ceeEEEEe-ccCccccH-HHHHH-h------hcCCCCCCCCCcCC
Q 017480 186 GIRFQCPI--TGLEFNG-------------KYRFVAMR-TCGHVLST-KALKE-V------KSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPV--T~~e~ng-------------~~rfV~L~-~CG~V~Se-~alke-v------k~~~CpvCg~~f~~ 236 (371)
...|.|++ +++.|.. ...|..-+ .||-.|+. ..|.. + +...|+.|++.|..
T Consensus 3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 77 (89)
T 2wbs_A 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSR 77 (89)
T ss_dssp CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCC
Confidence 35677877 7777642 11233322 47777743 33332 1 23579999999965
No 248
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=54.57 E-value=4.5 Score=31.20 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=26.1
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHH-h------hcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-V------KSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-v------k~~~CpvCg~~f~~~ 237 (371)
...|.||++++.|... ..|+. + +...|++|++.|...
T Consensus 26 ~~~h~C~~Cgk~F~~~---------------~~L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 26 AECHLCPVCGESFASK---------------GAQERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp CTTEECTTSCCEESSH---------------HHHHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred CCCEECCCCCCCcCcH---------------HHHhhhhhhccCCCccCCCCCCCEeCCH
Confidence 4569999999998753 23332 1 246899999999754
No 249
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=54.46 E-value=20 Score=34.11 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=34.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCeeC
Q 017480 17 TTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGKIL 55 (371)
Q Consensus 17 ~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk~L 55 (371)
..+.+.+++.+|+..++++++.. ++++++|.|+|.+..+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~ 361 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRL 361 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEE
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCC
Confidence 35677888899999999999999 9999999999998444
No 250
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=54.45 E-value=6.6 Score=27.39 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=28.2
Q ss_pred ccccCCCCCCCCC------eeeCCCCceecHHHHHHHHHc
Q 017480 120 CNCALSNEPLREP------CVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 120 ~~CaLS~~PL~~P------IV~~~lG~LYnKeaILe~LL~ 153 (371)
..|++..+.+..| ++...=|+.|-.+-|.+||..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc
Confidence 4688999988776 256678999999999999875
No 251
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=54.17 E-value=11 Score=27.29 Aligned_cols=44 Identities=20% Similarity=0.418 Sum_probs=33.0
Q ss_pred eeEcCCcccccCCceeEEEEeccCc-----cccHHHHHHhh----cCCCCCCCCCcC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGH-----VLSTKALKEVK----SSSCLVCHEEFG 235 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~-----V~Se~alkevk----~~~CpvCg~~f~ 235 (371)
.-.|.|+..+.++ .+ +.||.| .|-..+|...- ...||+|..+|.
T Consensus 6 ~~~CrIC~~~~~~--~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGN--ER--FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSC--CC--CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCC--ce--ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3468888777543 22 589876 88889998862 478999999985
No 252
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=54.07 E-value=6.4 Score=28.23 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=29.1
Q ss_pred ccccCCCCCCCCCe------eeCCCCceecHHHHHHHHHc
Q 017480 120 CNCALSNEPLREPC------VIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 120 ~~CaLS~~PL~~PI------V~~~lG~LYnKeaILe~LL~ 153 (371)
..|++..+++..|+ +...=|+.|-.+-|.+||..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 50 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 50 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc
Confidence 56999999998773 66678999999999999875
No 253
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=53.57 E-value=17 Score=28.07 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=30.2
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHH
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALL 152 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL 152 (371)
...|++..+.+..|++...-|+.|.++.|..|+.
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~ 55 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS 55 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH
Confidence 4679999999999977657899999999999985
No 254
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=51.88 E-value=20 Score=30.40 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=49.0
Q ss_pred ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcCCCCCccCccCCCCCceeeeeeecCCCCCCCCCceeEcCCcccccC
Q 017480 120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLSKNLPKQYSYIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFN 199 (371)
Q Consensus 120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k~~~~~~~HIksLKDlv~Lklt~n~~~~~~~~~~~~~CPVT~~e~n 199 (371)
..|++....+..|++...-|+.|.++.|..||... ...||+++..+.
T Consensus 55 ~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---------------------------------~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 55 LMCPICLDMLKNTMTTKECLHRFCADCIITALRSG---------------------------------NKECPTCRKKLV 101 (165)
T ss_dssp HBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT---------------------------------CCBCTTTCCBCC
T ss_pred CCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC---------------------------------cCCCCCCCCcCC
Confidence 57999999999998776889999999999998521 124999999986
Q ss_pred CceeEEEEeccCccccHHHHHHhh
Q 017480 200 GKYRFVAMRTCGHVLSTKALKEVK 223 (371)
Q Consensus 200 g~~rfV~L~~CG~V~Se~alkevk 223 (371)
....+.. +..-...+..+.
T Consensus 102 ~~~~l~~-----~~~l~~~i~~~~ 120 (165)
T 2ckl_B 102 SKRSLRP-----DPNFDALISKIY 120 (165)
T ss_dssp SGGGEEE-----CHHHHHHHHHHC
T ss_pred CcccCCc-----CHHHHHHHHHHH
Confidence 5443332 344566666654
No 255
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=50.85 E-value=13 Score=29.11 Aligned_cols=45 Identities=4% Similarity=0.031 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCCe
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNGK 53 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~Gk 53 (371)
|-|.|.-. - |++|.|....+..+|.++|.++ +++++...|.|.-.
T Consensus 6 ~~VKV~~~--~--tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 6 YTLKVHYK--Y--TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp EEEEEESS--S--EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEEE--E--EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 55666655 2 6899999999999999999999 99999999998653
No 256
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.79 E-value=5.8 Score=26.17 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=11.1
Q ss_pred eeEcCCcccccCC
Q 017480 188 RFQCPITGLEFNG 200 (371)
Q Consensus 188 ~~~CPVT~~e~ng 200 (371)
-|+||++.+.|.+
T Consensus 5 GFiCP~C~~~l~s 17 (34)
T 3mjh_B 5 GFICPQCMKSLGS 17 (34)
T ss_dssp EEECTTTCCEESS
T ss_pred ccCCcHHHHHcCC
Confidence 4999999998875
No 257
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=50.48 E-value=4.3 Score=28.46 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=11.2
Q ss_pred HHHHhh-cCCCCCCCCC
Q 017480 218 ALKEVK-SSSCLVCHEE 233 (371)
Q Consensus 218 alkevk-~~~CpvCg~~ 233 (371)
.+.++. +..||+||.+
T Consensus 23 ~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 23 PFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CGGGSCTTCBCTTTCCB
T ss_pred chhhCCCCCcCcCCCCc
Confidence 344554 4699999975
No 258
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=50.47 E-value=13 Score=27.20 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=30.5
Q ss_pred CCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 118 KWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 118 ~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
....|.+..+.+.+|++...=|+.|-++-|.+||..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE 49 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHH
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHh
Confidence 346799999999999765337999999999999975
No 259
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=49.01 E-value=42 Score=24.32 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.4
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k 154 (371)
...|++..+++..|++ ..=|+.|-.+-|.+|+...
T Consensus 19 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~ 53 (85)
T 2ecw_A 19 EVTCPICLELLKEPVS-ADCNHSFCRACITLNYESN 53 (85)
T ss_dssp TTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHS
T ss_pred CCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhc
Confidence 4579999999999965 4789999999999998763
No 260
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=48.32 E-value=14 Score=36.47 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=28.7
Q ss_pred CCccccCCCCCCCCCeeeCCCCce--ecHHHHHHHHH
Q 017480 118 KWCNCALSNEPLREPCVIDKLGTI--FNKEALVHALL 152 (371)
Q Consensus 118 ~w~~CaLS~~PL~~PIV~~~lG~L--YnKeaILe~LL 152 (371)
-.-.|.||..++..|+=+-.--+| |+.++.|+..-
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~ 250 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNE 250 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHH
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHh
Confidence 355799999999999776666677 99999999753
No 261
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=48.15 E-value=12 Score=26.52 Aligned_cols=37 Identities=24% Similarity=0.481 Sum_probs=25.5
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHH-------hhcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-------VKSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-------vk~~~CpvCg~~f~~~ 237 (371)
..+|.|+++++.|... ..|+. .+...|++|++.|...
T Consensus 12 ~k~~~C~~C~k~f~~~---------------~~L~~H~~~h~~~~~~~C~~C~~~f~~~ 55 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRS---------------SILVQHQRVHTGEKPYKCLECGKAFSQN 55 (72)
T ss_dssp CCCEECSSSCCEESSH---------------HHHHHHHHGGGCSCCEECSSSCCEESSH
T ss_pred CCCccCCCCCCccCCH---------------HHHHHHHHhcCCCCCeECCCCCcccCCH
Confidence 4679999999888642 22221 1246899999999753
No 262
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.81 E-value=26 Score=25.02 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=29.7
Q ss_pred CCccccCCCCCCCCCeeeCCCCceecHHHHHHHHH
Q 017480 118 KWCNCALSNEPLREPCVIDKLGTIFNKEALVHALL 152 (371)
Q Consensus 118 ~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL 152 (371)
....|++..+.+..|++. .=|+.|-.+-|.+|+.
T Consensus 19 ~~~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTI-DCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCCBCTTTCSBCSSEEEC-TTCCEEEHHHHHHHCS
T ss_pred cCCEeccCCcccCCeEEc-CCCChhhHHHHHHHHH
Confidence 346799999999999766 8899999999999964
No 263
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=47.61 E-value=25 Score=25.93 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=32.4
Q ss_pred CCceeEcCC--cccccCC-------------ceeEEEEe-ccCccccHH-HHHH-h------hcCCCCCCCCCcCC
Q 017480 185 DGIRFQCPI--TGLEFNG-------------KYRFVAMR-TCGHVLSTK-ALKE-V------KSSSCLVCHEEFGE 236 (371)
Q Consensus 185 ~~~~~~CPV--T~~e~ng-------------~~rfV~L~-~CG~V~Se~-alke-v------k~~~CpvCg~~f~~ 236 (371)
....|.|++ +++.|.. ...|..-+ .||-.|... .|.. + +...|++|++.|..
T Consensus 12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 87 (100)
T 2ebt_A 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSR 87 (100)
T ss_dssp SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSS
T ss_pred cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCC
Confidence 356789997 8888753 22244332 588777543 2322 1 24689999999975
No 264
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=47.56 E-value=17 Score=30.54 Aligned_cols=32 Identities=9% Similarity=-0.018 Sum_probs=28.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe
Q 017480 19 LTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL 50 (371)
Q Consensus 19 ~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~ 50 (371)
.++-|--++|+.+|+.+|+.. |+|+++|||-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 356777789999999999998 99999999953
No 265
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=47.35 E-value=9.5 Score=29.06 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=20.3
Q ss_pred hcCCCCCCCCCcCCCc----eEEecCChHHHHH
Q 017480 223 KSSSCLVCHEEFGEMD----KILINGNEEEISV 251 (371)
Q Consensus 223 k~~~CpvCg~~f~~~D----iI~Lnp~~ee~~~ 251 (371)
....||+|+......| ||+++|...++++
T Consensus 22 ~~~~CPnC~s~~tS~~w~G~ViI~dPe~S~IAK 54 (69)
T 1ryq_A 22 SEDRCPVCGSRDLSEEWFDLVIIVDVENSEIAK 54 (69)
T ss_dssp SSSSCTTTCCCCEESCEEEEEEESCGGGCHHHH
T ss_pred cCCcCCCccCCccCCccceEEEEeCCchhHHHH
Confidence 4568999986543333 7788898777754
No 266
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=46.93 E-value=24 Score=23.52 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=25.1
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHH----h----hcCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE----V----KSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke----v----k~~~CpvCg~~f~~ 236 (371)
..+|.|+++++.|.... .|.. + +...|++|++.|..
T Consensus 10 ~k~~~C~~C~k~f~~~~---------------~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPD---------------HLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SCCEECSSSCCEESSHH---------------HHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCeECCCCCcccCCHH---------------HHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 56799999999886422 2221 1 24689999999964
No 267
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=46.90 E-value=14 Score=27.98 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=29.6
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
-..|.+..+.+.+|++...=|+.|.+..|.+|+..
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~ 47 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE 47 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCEECHHHHHHHHHH
T ss_pred CCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHh
Confidence 46799999999999765326999999999999864
No 268
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=46.76 E-value=9.4 Score=25.39 Aligned_cols=34 Identities=24% Similarity=0.559 Sum_probs=22.5
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHH-------hhcCCCCCCCCCcCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-------VKSSSCLVCHEEFGE 236 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-------vk~~~CpvCg~~f~~ 236 (371)
+|.|+++++.|.... .|.. .+...|+.|++.|..
T Consensus 1 p~~C~~C~~~f~~~~---------------~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 1 KYICEECGIRXKKPS---------------MLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CCBCTTTCCBCSSHH---------------HHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CCcCCCCcCcCCCHH---------------HHHHHHHhcCCCCCccCCCCCchhcC
Confidence 478999888886422 2221 123579999999974
No 269
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=46.46 E-value=5.3 Score=28.95 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=12.4
Q ss_pred HHHHHhh-cCCCCCCCCC
Q 017480 217 KALKEVK-SSSCLVCHEE 233 (371)
Q Consensus 217 ~alkevk-~~~CpvCg~~ 233 (371)
.++.++. +..||+||.+
T Consensus 28 t~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 28 TDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CCGGGSCTTCBCTTTCCB
T ss_pred CChhHCCCCCcCcCCCCc
Confidence 4556665 5799999985
No 270
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.20 E-value=19 Score=26.58 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=29.4
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
...|++..+++..|++ ..-|+.|..+-|.+||-.
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 15 PFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA 48 (81)
T ss_dssp CSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH
T ss_pred CCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC
Confidence 3579999999999965 578999999999999853
No 271
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=46.19 E-value=9.8 Score=30.89 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=26.8
Q ss_pred EcCCcccc-cCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480 190 QCPITGLE-FNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 190 ~CPVT~~e-~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~ 236 (371)
.||+|+.. +.-..+-+-+.=.|+.+.-. .|....|+.||+.+..
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~---~v~~~~C~~CGE~~~d 48 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLK---GIHGLYCVHCEESIMN 48 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEE---EEEEEEESSSSCEECC
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEEC---CCceeECCCCCCEeec
Confidence 69999875 43223333334456554432 3445789999998764
No 272
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=46.17 E-value=42 Score=25.16 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=38.8
Q ss_pred EEcCCCCCHHHHHHHHhccC-------C-----CCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 21 VGANQFETLNHLKRSLLSLD-------Q-----SLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 21 l~v~~~~TV~~lK~~i~~~g-------i-----~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
++++...||.+|.+.|.... + ......+..||+......- .++-|.++++|.+...+-||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~--~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKG--LDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCS--SSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCC--CCcCCCCCCEEEEeCCCCCC
Confidence 34444579999998886541 1 0145678889987752211 34568999999886665554
No 273
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=44.25 E-value=6.9 Score=32.27 Aligned_cols=50 Identities=16% Similarity=0.413 Sum_probs=32.2
Q ss_pred CceeEcCCcccccCCc-------------eeEEEEeccCccccHHH-HHH-h------hcCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGK-------------YRFVAMRTCGHVLSTKA-LKE-V------KSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~-------------~rfV~L~~CG~V~Se~a-lke-v------k~~~CpvCg~~f~~ 236 (371)
+.+|.|+++++.|... -.|.. .-||-.|.... |.. + +...|++||+.|..
T Consensus 20 ek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C-~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 90 (133)
T 2lt7_A 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPC-RYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFIN 90 (133)
T ss_dssp EEEEEETTTCCEESCHHHHHHHHHHHHCCSCEEC-SSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESS
T ss_pred CcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeC-CccCeecccccchhhhccccCCCccccCCCCCCCcCC
Confidence 5679999999998642 12332 24888776443 332 1 24579999998865
No 274
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=44.11 E-value=5.3 Score=28.96 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=11.7
Q ss_pred HHHHhh-cCCCCCCCCC
Q 017480 218 ALKEVK-SSSCLVCHEE 233 (371)
Q Consensus 218 alkevk-~~~CpvCg~~ 233 (371)
.+.++. +..||+||.+
T Consensus 29 ~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 29 RWEDIPADWVCPDCGVG 45 (55)
T ss_dssp CGGGSCTTCCCTTTCCC
T ss_pred ChhHCCCCCcCCCCCCC
Confidence 455664 4699999985
No 275
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=43.82 E-value=13 Score=24.69 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=23.6
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCC
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEM 237 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~ 237 (371)
.+|.|+++++.|.....+. -|+ +.-...+...|++|++.|...
T Consensus 3 ~~~~C~~C~~~f~~~~~l~-----~H~---~~h~~~~~~~C~~C~~~f~~~ 45 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLN-----IHL---RTHTGEKPYKCEFCEYAAAQK 45 (57)
T ss_dssp --CBCTTTCCBCSCHHHHH-----HHH---HHHHCCCCEECSSSSCEESSH
T ss_pred CCccCCCCcchhCChHHHH-----HHH---HHcCCCCCcCCCCCcchhCCH
Confidence 4789999998887532110 000 000011246899999999753
No 276
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.70 E-value=3.9 Score=31.36 Aligned_cols=43 Identities=14% Similarity=0.301 Sum_probs=26.8
Q ss_pred CceeEcCCcccccC-CceeEEEEeccCccccHHHHHH-hhcCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFN-GKYRFVAMRTCGHVLSTKALKE-VKSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~n-g~~rfV~L~~CG~V~Se~alke-vk~~~CpvCg~~f~~ 236 (371)
..+|.|+++++.|. ....+. -|+ +.-.. .+...|++|++.|..
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~-----~H~---~~h~~~~~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLK-----KHM---EVCQKLQDALKCQHCRKQFKS 66 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHH-----HHH---HHHHHHHHHHSCSSSCCCCSC
T ss_pred CCCcCCCCCCCChhhhHHHHH-----HHH---HHHcCCCCCEECCCCCCccCC
Confidence 46799999999887 432211 011 11111 345689999999975
No 277
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=43.57 E-value=1.1e+02 Score=24.14 Aligned_cols=72 Identities=19% Similarity=0.184 Sum_probs=44.1
Q ss_pred EEEEEcCCCCeeeEEEEcCC-CCCHHHHHHHHhcc-CCCCCceEE-EeCCe---eCCCCCCcccCCCCCCCCeEEEEeee
Q 017480 6 QIFIKSPSNSLTTLTVGANQ-FETLNHLKRSLLSL-DQSLSSLYF-TLNGK---ILDESTPLFKNPQIAPLSTLYLRQRV 79 (371)
Q Consensus 6 QIFVk~~~g~~~t~~l~v~~-~~TV~~lK~~i~~~-gi~~~~q~L-i~~Gk---~L~D~~tL~~~~~I~~~sTL~L~lrL 79 (371)
-||-|=-+.+ ..-+|..++ ..+|.+||..|..+ ++-..++-| +|+.. .-.|+..| |+.+++| ++-|+
T Consensus 8 ~V~YKFkS~k-~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~~l-----IprnssV-iVrRv 80 (86)
T 2c7h_A 8 CVHYKFSSKL-NYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNAL-----IPKNSSV-IVRRI 80 (86)
T ss_dssp EEEEEETTCS-SEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTTCE-----EETTCCE-EEEEE
T ss_pred EEEEEEeecC-CcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCceE-----EecCCEE-EEEec
Confidence 3554443333 234666665 58999999999988 654455655 55543 23344444 7777776 66677
Q ss_pred cCCCC
Q 017480 80 FGGGG 84 (371)
Q Consensus 80 ~G~~~ 84 (371)
..+|.
T Consensus 81 P~~~~ 85 (86)
T 2c7h_A 81 PIGGV 85 (86)
T ss_dssp ECSSC
T ss_pred cCccC
Confidence 66553
No 278
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=43.42 E-value=4.5 Score=32.17 Aligned_cols=44 Identities=9% Similarity=0.271 Sum_probs=22.4
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-cCCCCCCCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-SSSCLVCHEE 233 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-~~~CpvCg~~ 233 (371)
...|+|++++....+..- .+=..|-.-..+.++. ++.||+||.+
T Consensus 33 m~~y~C~vCGyvYD~~~G----dp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCGHIYDEALG----DEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTTEEEETTSC----CTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CceEECCCCCeEecCCcC----CcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 346888877643321100 0111111223456665 5799999984
No 279
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.14 E-value=8.8 Score=29.63 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=25.9
Q ss_pred CceeEcCCccccc-CCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEF-NGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~-ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~ 237 (371)
..+|.|+++++.| .....+.. | .+.- .-+...|.+||+.|...
T Consensus 32 ~~~~~C~~C~k~F~~~~~~L~~-----H---~~~h-~~k~~~C~~Cgk~F~~~ 75 (96)
T 2ctd_A 32 KGSVSCPTCQAVGRKTIEGLKK-----H---MENC-KQEMFTCHHCGKQLRSL 75 (96)
T ss_dssp TSCEECTTTCSCEESSHHHHHH-----H---HHHH-CCCCCCCSSSCCCCSSH
T ss_pred CCCcCCCCCCCCcccCHHHHHH-----H---HHHH-CCCCeECCCCCCeeCCH
Confidence 4579999999988 65322110 0 0001 12356899999999753
No 280
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.83 E-value=33 Score=24.97 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.0
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
...|++..+++..|++. .=|+.|..+-|.+|+..
T Consensus 19 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSL-DCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHH
T ss_pred CCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHH
Confidence 46799999999999665 78999999999999876
No 281
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=42.82 E-value=33 Score=27.48 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=41.4
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCc
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMD 238 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~D 238 (371)
...|.|-.+++.+.+. .|+ ..=|.+++...+.+.-...|..|++++...|
T Consensus 28 ~~CF~C~~C~~~L~~~-~f~--~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~ 77 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGE-IYV--MVNDKPVCKPCYVKNHAVVCQGCHNAIDPEV 77 (126)
T ss_dssp GGGSBCTTTCCBCTTS-EEE--EETTEEEEHHHHHHHSCCBCTTTCSBCCTTS
T ss_pred CCCCCcCCCCCCCCcC-EEE--eECCEEechHHhCcCcCccCcccCCcCCcCc
Confidence 3568999999999875 343 3579999999999998899999999998654
No 282
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.68 E-value=15 Score=25.69 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=25.5
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHH-h------hcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-V------KSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-v------k~~~CpvCg~~f~~~ 237 (371)
..+|.|+++++.|.... .|+. + +...|++|++.|...
T Consensus 7 ~~~~~C~~C~k~f~~~~---------------~L~~H~~~H~~~~~~~C~~C~~~f~~~ 50 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKA---------------ALRIHERIHCTDRPFKCNYCSFDTKQP 50 (70)
T ss_dssp CCSEECSSSSCEESSHH---------------HHHHHHGGGCCSCSEECSSSSCEESSH
T ss_pred CCCeECCCCCcccCCHH---------------HHHHHHHHcCCCCCEeCCCCCCccCCH
Confidence 56799999999887522 2222 1 235899999999753
No 283
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=42.11 E-value=5.2 Score=28.65 Aligned_cols=16 Identities=13% Similarity=0.490 Sum_probs=11.7
Q ss_pred HHHHhh-cCCCCCCCCC
Q 017480 218 ALKEVK-SSSCLVCHEE 233 (371)
Q Consensus 218 alkevk-~~~CpvCg~~ 233 (371)
.+.++. +..||+||.+
T Consensus 28 ~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 28 KFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp CGGGSCTTCBCTTTCCB
T ss_pred CHhHCCCCCcCCCCCCC
Confidence 455664 4699999985
No 284
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.04 E-value=8.8 Score=27.50 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=26.3
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHH---hhcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE---VKSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke---vk~~~CpvCg~~f~~~ 237 (371)
+.+|.|+++++.|.....+. -|+ +.-.. .+...|++|++.|...
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~-----~H~---~~h~~~~~~~~~~C~~C~k~f~~~ 51 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLN-----WHQ---RKHAETVAALRFPCEFCGKRFEKP 51 (78)
T ss_dssp CCCEECSSSCCEESSHHHHH-----HHH---HHHHHHTTTCCEECTTTCCEESSH
T ss_pred CcCeECCCCCCeeCCHHHHH-----HHH---HHhhccCCCcccCCCCCCchhCCH
Confidence 46799999999886532111 010 11111 2346899999999753
No 285
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.88 E-value=35 Score=25.18 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=31.3
Q ss_pred cCCccccCCCCCCCC----CeeeCCCCceecHHHHHHHHHcC
Q 017480 117 SKWCNCALSNEPLRE----PCVIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 117 ~~w~~CaLS~~PL~~----PIV~~~lG~LYnKeaILe~LL~k 154 (371)
.....|++..+.+.. |++. .=|+.|-.+-|.+|+-..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~ 53 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS 53 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC
T ss_pred cCCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC
Confidence 445779999999998 8655 679999999999999864
No 286
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=41.51 E-value=28 Score=25.48 Aligned_cols=13 Identities=23% Similarity=0.613 Sum_probs=10.1
Q ss_pred cCCCCCCCCCcCC
Q 017480 224 SSSCLVCHEEFGE 236 (371)
Q Consensus 224 ~~~CpvCg~~f~~ 236 (371)
...|++|++.|..
T Consensus 65 ~~~C~~C~~~f~~ 77 (95)
T 2yt9_A 65 PYICQSCGKGFSR 77 (95)
T ss_dssp SBCCSSSCCCBSS
T ss_pred ceECCCccchhCC
Confidence 3579999998865
No 287
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=41.07 E-value=21 Score=28.02 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=32.0
Q ss_pred cCCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 117 SKWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 117 ~~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
.....|++....+.+|++...-|+.|.+.-|.+|+-.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~ 49 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET 49 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh
Confidence 4457899999999999776688999999999999754
No 288
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=41.07 E-value=12 Score=25.14 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=22.8
Q ss_pred eeEcCCcccccCCceeEEEEeccCccccHHHHHH-h------hcCCCCCCCCCcCC
Q 017480 188 RFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-V------KSSSCLVCHEEFGE 236 (371)
Q Consensus 188 ~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-v------k~~~CpvCg~~f~~ 236 (371)
+|.|+++++.|.... .|.. + +...|+.|++.|..
T Consensus 2 ~~~C~~C~~~f~~~~---------------~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 2 SFVCEVCTRAFARQE---------------HLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CBCCTTTCCCBSCHH---------------HHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCcCCCCccccCCHH---------------HHHHHHHHhCCCCCccCCCCCCccCC
Confidence 578999888886432 2221 1 23579999999975
No 289
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.30 E-value=14 Score=29.55 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=10.6
Q ss_pred cCCCCCCCCCcCC
Q 017480 224 SSSCLVCHEEFGE 236 (371)
Q Consensus 224 ~~~CpvCg~~f~~ 236 (371)
...||+||.+..+
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3579999999874
No 290
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=40.25 E-value=5.8 Score=28.40 Aligned_cols=16 Identities=19% Similarity=0.582 Sum_probs=11.2
Q ss_pred HHHHhh-cCCCCCCCCC
Q 017480 218 ALKEVK-SSSCLVCHEE 233 (371)
Q Consensus 218 alkevk-~~~CpvCg~~ 233 (371)
.+.++. +..||+||.+
T Consensus 29 ~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 29 KFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CTTSSCTTCCCSSSCCC
T ss_pred chHHCCCCCcCCCCCCc
Confidence 345554 4699999985
No 291
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=39.71 E-value=18 Score=25.37 Aligned_cols=37 Identities=22% Similarity=0.540 Sum_probs=24.0
Q ss_pred CceeEcCC--cccccCCceeEEEEeccCccccHHHHHH-------hhcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPI--TGLEFNGKYRFVAMRTCGHVLSTKALKE-------VKSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPV--T~~e~ng~~rfV~L~~CG~V~Se~alke-------vk~~~CpvCg~~f~~~ 237 (371)
..+|.||+ +++.|... ..|.. .+...|++||+.|...
T Consensus 17 ~~~~~C~~~~C~k~f~~~---------------~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 62 (73)
T 1f2i_G 17 MRPYACPVESCDRRFSRS---------------DELTRHIRIHTGQKPFQCRICMRNFSRS 62 (73)
T ss_dssp CCCEECSSTTBCCEESSH---------------HHHHHHHHHHHCCCCEECTTTCCEESCH
T ss_pred CCccCCcCCCCCCccCCH---------------HHHHHHHHhhCCCCCeECCCCCchhCCH
Confidence 56799985 77776542 22221 1246899999999753
No 292
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=38.97 E-value=6.9 Score=29.72 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=15.3
Q ss_pred HHHHhh-cCCCCCCCCCcCCCceEEec
Q 017480 218 ALKEVK-SSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 218 alkevk-~~~CpvCg~~f~~~DiI~Ln 243 (371)
.+.++. ++.||+|+.+ .++.+.+.
T Consensus 33 ~f~~lPddw~CP~Cga~--K~~F~~~~ 57 (70)
T 1dx8_A 33 PFVDLSDSFMCPACRSP--KNQFKSIK 57 (70)
T ss_dssp CGGGSCTTCBCTTTCCB--GGGEEECC
T ss_pred chhhCCCCCcCCCCCCC--HHHceEcc
Confidence 455664 4799999985 34444443
No 293
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.58 E-value=44 Score=25.89 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=30.9
Q ss_pred CCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC
Q 017480 118 KWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 118 ~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k 154 (371)
....|++..+++..|++ ..-|+.|.++-|.+|+-..
T Consensus 20 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~ 55 (112)
T 1jm7_A 20 KILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQK 55 (112)
T ss_dssp HHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSS
T ss_pred CCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhC
Confidence 35689999999999966 4789999999999998753
No 294
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=37.59 E-value=6.5 Score=30.83 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=27.8
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhh-cCCCCCCCCCcCCCceEEec
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVK-SSSCLVCHEEFGEMDKILIN 243 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk-~~~CpvCg~~f~~~DiI~Ln 243 (371)
...|+|++++....+..- .+=..|-.-..+.++. ++.||+||.+ .++.+.+.
T Consensus 25 m~~y~C~vCGyvYD~~~G----dp~~gI~pGT~fedlPddW~CPvCga~--K~~F~~i~ 77 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALG----WPEDGIAAGTRWDDIPDDWSCPDCGAA--KSDFEMVE 77 (81)
T ss_dssp CCEEEETTTCCEEETTTC----BTTTTBCTTCCTTTSCTTCCCTTTCCC--GGGEEEEC
T ss_pred cceEEeCCCCEEEcCCcC----CcccCcCCCCChhHCCCCCcCCCCCCC--HHHcEEcc
Confidence 346888887744332100 1112222334456665 5799999985 44555553
No 295
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=37.17 E-value=19 Score=28.85 Aligned_cols=49 Identities=20% Similarity=0.412 Sum_probs=39.3
Q ss_pred eeEcCCcccccC---CceeEEEEeccCccccHHHHHHhh---cCCCCCCCCCcCC
Q 017480 188 RFQCPITGLEFN---GKYRFVAMRTCGHVLSTKALKEVK---SSSCLVCHEEFGE 236 (371)
Q Consensus 188 ~~~CPVT~~e~n---g~~rfV~L~~CG~V~Se~alkevk---~~~CpvCg~~f~~ 236 (371)
.-+|-|++.... +.--||+-.-|+--++..+++--. ...||.|..+|+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 357999998853 123799999999999999998764 4689999999973
No 296
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.08 E-value=39 Score=23.76 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=29.2
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHH
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALL 152 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL 152 (371)
...|++..+++..|++ ..=|+.|-++-|.+|+-
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 15 KYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS 47 (66)
T ss_dssp CEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT
T ss_pred CCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH
Confidence 4679999999999966 58899999999999984
No 297
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=36.38 E-value=24 Score=27.70 Aligned_cols=37 Identities=30% Similarity=0.645 Sum_probs=25.5
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHH-----hhcCCCCCCCCCcCCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-----VKSSSCLVCHEEFGEM 237 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-----vk~~~CpvCg~~f~~~ 237 (371)
..+|.|+++++.|.... .|+. .+...|+.||+.|...
T Consensus 72 ~~~~~C~~C~k~f~~~~---------------~l~~H~~~H~~~~~C~~C~k~f~~~ 113 (129)
T 2wbt_A 72 ISQFVCPLCLMPFSSSV---------------SLKQHIRYTEHTKVCPVCKKEFTST 113 (129)
T ss_dssp HCSEECTTTCCEESSHH---------------HHHHHHHHTCCCCBCTTTCCBCSSH
T ss_pred CCCeECCCCCcccCCHh---------------HHHHHHHHCCCCCCCCCCCcccCCH
Confidence 35799999999886432 1211 2356899999999753
No 298
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=35.68 E-value=45 Score=28.29 Aligned_cols=51 Identities=10% Similarity=0.218 Sum_probs=39.7
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCceE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDKI 240 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~DiI 240 (371)
...|.|-.++..|.+.. | . .=|.+++...+.+.-...|..|++++...++|
T Consensus 31 ~~CF~C~~C~~~L~~~~-f--~-~~g~~yC~~~y~~~f~~~C~~C~~~I~~~~~v 81 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERC-F--S-RGESVYCKDDFFKRFGTKCAACQLGIPPTQVV 81 (169)
T ss_dssp TTTSBCTTTCCBCCSCC-E--E-SSSCEECHHHHHHHHSCBCTTTCCBCCTTSEE
T ss_pred cccCccCCCCCcCCCCC-c--c-cCCeeeecccccccccccccccccccCCCcEE
Confidence 45688999999988764 4 2 46899999999888778888888888766544
No 299
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.55 E-value=36 Score=27.08 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=48.1
Q ss_pred EEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEe---CCeeCCCCCCcccCCCCCCC
Q 017480 6 QIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTL---NGKILDESTPLFKNPQIAPL 70 (371)
Q Consensus 6 QIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~---~Gk~L~D~~tL~~~~~I~~~ 70 (371)
-|.|--...+ -..+-|++..++++|---|.++ .+.++...|.- .+.+|+-+.+| .+|||.+.
T Consensus 12 RLvVNy~~tQ--KtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSL-ndlgirEL 77 (91)
T 2daj_A 12 RVVINFKKTQ--KTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSL-NDLGLREL 77 (91)
T ss_dssp EEEEEETTTE--EEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCH-HHHTCSEE
T ss_pred EEEEeecCcc--eeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcch-hhhhhhhh
Confidence 3444444443 3357899999999999999999 89999988854 56778888999 99999863
No 300
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=35.47 E-value=40 Score=35.66 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=35.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC-eeCCCCCCc
Q 017480 18 TLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG-KILDESTPL 61 (371)
Q Consensus 18 t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G-k~L~D~~tL 61 (371)
.+.+.+++.+|+.+|+..|+.. ||+++.|.|++.+ -+|++....
T Consensus 323 ~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~ 368 (676)
T 3qa8_A 323 VHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPL 368 (676)
T ss_dssp CCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCG
T ss_pred cceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcch
Confidence 3467788899999999999999 9999999998854 455555444
No 301
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=34.73 E-value=45 Score=27.07 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=45.7
Q ss_pred CCcceEEEEEcC------CCCeeeEEEEcCC----CCCHHHHHHHHhcc--CC------CCC--c----eEEEeCCeeCC
Q 017480 1 MRSKTQIFIKSP------SNSLTTLTVGANQ----FETLNHLKRSLLSL--DQ------SLS--S----LYFTLNGKILD 56 (371)
Q Consensus 1 ~~~~MQIFVk~~------~g~~~t~~l~v~~----~~TV~~lK~~i~~~--gi------~~~--~----q~Li~~Gk~L~ 56 (371)
|-..|+|-|+-. .|+ .+.+++.+ ..||.+|=..|.+. .. ..+ . ..+.-||+..+
T Consensus 1 ~~~~m~v~V~f~g~l~~l~g~--~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e 78 (110)
T 2k9x_A 1 MSNHNHITVQFAGGCELLFAK--QTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAE 78 (110)
T ss_dssp CCCSSCCEEEEESSCGGGTTS--CSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHH
T ss_pred CCCccEEEEEEEecHHHHhCC--eEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeee
Confidence 555688877743 333 34677763 25999987777664 11 001 1 22344565443
Q ss_pred CCCCcccCCCCCCCCeEEEEeeecCCC
Q 017480 57 ESTPLFKNPQIAPLSTLYLRQRVFGGG 83 (371)
Q Consensus 57 D~~tL~~~~~I~~~sTL~L~lrL~G~~ 83 (371)
--.- .+|-|+++++|.+...|-||-
T Consensus 79 ~l~g--ldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 79 VVGG--MDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp HHTS--SCCCCCSSCEEEEEECCCCC-
T ss_pred ccCC--cccCCCCcCEEEEeCCCcccc
Confidence 1011 357899999998887787764
No 302
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=34.49 E-value=99 Score=23.42 Aligned_cols=60 Identities=22% Similarity=0.113 Sum_probs=40.9
Q ss_pred EEEcCCCCCHHHHHHHHhcc--CCC----C----C----ceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 20 TVGANQFETLNHLKRSLLSL--DQS----L----S----SLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 20 ~l~v~~~~TV~~lK~~i~~~--gi~----~----~----~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.++++ ..||.+|.+.|... ++. . . ...+..||+...+..- .++-|.++++|.+..++-||
T Consensus 20 ~~~~~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~--~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSAS-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG--LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEEC-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG--GGCBCCTTCEEEEEECCTTC
T ss_pred EEecC-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC--CCcCCCCCCEEEEECCCCCC
Confidence 46653 47999999999866 211 1 1 3567789988764221 24568999999988888876
No 303
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=33.78 E-value=9.3 Score=32.77 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=13.5
Q ss_pred cCccccHHHHHHhhcCCCCCCCCCcC
Q 017480 210 CGHVLSTKALKEVKSSSCLVCHEEFG 235 (371)
Q Consensus 210 CG~V~Se~alkevk~~~CpvCg~~f~ 235 (371)
||++|... .....||.||.+..
T Consensus 138 Cg~~~~~~----~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 138 CGRKFSTL----PPGGVCPDCGSKVK 159 (165)
T ss_dssp SCCEESSC----CGGGBCTTTCCBEE
T ss_pred CCCcccCC----CCCCcCCCCCCcce
Confidence 55555432 22348999998754
No 304
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=33.74 E-value=17 Score=27.71 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=27.2
Q ss_pred CceeEcCC--cccccCC-------------ceeEEEEe-ccCccccHH-HHHH-h------hcCCCCCCCCCcCC
Q 017480 186 GIRFQCPI--TGLEFNG-------------KYRFVAMR-TCGHVLSTK-ALKE-V------KSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPV--T~~e~ng-------------~~rfV~L~-~CG~V~Se~-alke-v------k~~~CpvCg~~f~~ 236 (371)
..+|.|++ +++.|.. ...|..-+ .||-.|... .|.. + +...|++|++.|..
T Consensus 4 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 78 (119)
T 2jp9_A 4 KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSR 78 (119)
T ss_dssp SCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESC
T ss_pred CeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCC
Confidence 34577776 7666642 11233322 477666432 2322 1 13578888888864
No 305
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.59 E-value=24 Score=24.82 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=25.6
Q ss_pred CCceeEcCCcccccCCceeEEEEeccCccccHHHHHH-------hhcCCCCCCCCCcCC
Q 017480 185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-------VKSSSCLVCHEEFGE 236 (371)
Q Consensus 185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-------vk~~~CpvCg~~f~~ 236 (371)
...+|.|+++++.|.... .|.. .+...|++|++.|..
T Consensus 14 ~~~~~~C~~C~k~f~~~~---------------~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKG---------------NLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCHH---------------HHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCHH---------------HHHHHHHHcCCCCCEECCCCCchhCC
Confidence 356799999999887432 1221 123589999999975
No 306
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.54 E-value=46 Score=23.29 Aligned_cols=34 Identities=12% Similarity=0.315 Sum_probs=28.0
Q ss_pred ccccCCCC-CCCCCe---eeCCCCceecHHHHHHHHHc
Q 017480 120 CNCALSNE-PLREPC---VIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 120 ~~CaLS~~-PL~~PI---V~~~lG~LYnKeaILe~LL~ 153 (371)
..|++..+ .+..|+ |...=|+.|-++-|.+|+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~ 41 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR 41 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc
Confidence 45899998 777774 55678999999999999875
No 307
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=33.43 E-value=27 Score=28.01 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=29.2
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHH
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALL 152 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL 152 (371)
-..|.+..+.+..|++. .-|+.|.+..|..|+.
T Consensus 52 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 52 TFQCICCQELVFRPITT-VCQHNVCKDCLDRSFR 84 (124)
T ss_dssp HTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHH
T ss_pred CCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHh
Confidence 35799999999999655 7899999999999985
No 308
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=32.84 E-value=5 Score=33.30 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCeeeCC-----------------CCceecHHHHHHHHH
Q 017480 120 CNCALSNEPLREPCVIDK-----------------LGTIFNKEALVHALL 152 (371)
Q Consensus 120 ~~CaLS~~PL~~PIV~~~-----------------lG~LYnKeaILe~LL 152 (371)
..|++..+++..|.+.|. -|+.|-.+.|.+||.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~ 98 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 98 (117)
T ss_dssp --------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH
Confidence 689999999998754443 355666666666654
No 309
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=32.42 E-value=35 Score=24.01 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=30.4
Q ss_pred ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
..|++..+++..|++.-.=|+.|-.+-|.+|+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~ 39 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ 39 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC
Confidence 5699999999998777788999999999999864
No 310
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=32.26 E-value=19 Score=19.67 Aligned_cols=13 Identities=23% Similarity=0.823 Sum_probs=10.5
Q ss_pred CCCCCCCCCcCCC
Q 017480 225 SSCLVCHEEFGEM 237 (371)
Q Consensus 225 ~~CpvCg~~f~~~ 237 (371)
..|+.|++.|...
T Consensus 3 ~~C~~C~~~f~~~ 15 (29)
T 2m0e_A 3 HKCPHCDKKFNQV 15 (29)
T ss_dssp CCCSSCCCCCCTT
T ss_pred CcCCCCCcccCCH
Confidence 4799999999754
No 311
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=32.10 E-value=27 Score=29.55 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 118 KWCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 118 ~w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
.+..|.+..+++.+|++ ..-|+.|.+..|.+||-.
T Consensus 77 ~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~ 111 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKA 111 (150)
T ss_dssp HHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHT
T ss_pred cCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHh
Confidence 45689999999999966 588999999999999863
No 312
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.91 E-value=24 Score=25.03 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=25.0
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHH-------hhcCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-------VKSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-------vk~~~CpvCg~~f~~ 236 (371)
..+|.|+++++.|.... .|.. .+...|++|++.|..
T Consensus 16 ~~~~~C~~C~~~f~~~~---------------~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSS---------------DLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SCSSBCSSSCCBCSCHH---------------HHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCEECCCCCcccCCHH---------------HHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 56799999999886422 2221 124589999999975
No 313
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=31.59 E-value=23 Score=29.20 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=27.4
Q ss_pred ccccCCCCCCCCCeeeCCCCceecHHHHHHHH
Q 017480 120 CNCALSNEPLREPCVIDKLGTIFNKEALVHAL 151 (371)
Q Consensus 120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~L 151 (371)
..|.+...++.+|++. .-|+.|..+.|.+|+
T Consensus 54 ~~C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~ 84 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTL-NCAHSFCSYCINEWM 84 (138)
T ss_dssp SBCTTTCSBCSSEEEE-TTSCEEEHHHHHHHT
T ss_pred CCCcccCcccCCceEC-CCCCCccHHHHHHHH
Confidence 3699999999999655 689999999999996
No 314
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=31.23 E-value=67 Score=25.06 Aligned_cols=73 Identities=14% Similarity=0.133 Sum_probs=44.1
Q ss_pred ceEEEEEcCC------CCeeeEEEEcCCCCCHHHHHHHHhcc--CCCC-----C----ce-------EEEeCCeeCCCCC
Q 017480 4 KTQIFIKSPS------NSLTTLTVGANQFETLNHLKRSLLSL--DQSL-----S----SL-------YFTLNGKILDEST 59 (371)
Q Consensus 4 ~MQIFVk~~~------g~~~t~~l~v~~~~TV~~lK~~i~~~--gi~~-----~----~q-------~Li~~Gk~L~D~~ 59 (371)
+|+|-|+-.. |. ..+.++ ..||.+|.+.|... ++.. . .. .+..||+......
T Consensus 3 mm~v~V~~fa~lr~~~g~-~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~ 78 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGT-PELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE 78 (99)
T ss_dssp CCEEEEEECTHHHHHHSS-SEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT
T ss_pred ceEEEEEEeHHHHHHhCC-CeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC
Confidence 3677776543 22 234454 46999999888755 2211 0 12 6788998764221
Q ss_pred CcccCCCCCCCCeEEEEeeecCC
Q 017480 60 PLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 60 tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
. .++-|.++++|.+...+-||
T Consensus 79 ~--~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 79 G--LETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp S--TTSCCCTTEEEEEECCCSCC
T ss_pred C--CCCCCCCCCEEEEECCCCCC
Confidence 1 24568899999887666554
No 315
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=30.84 E-value=1.6e+02 Score=23.81 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=52.0
Q ss_pred eEEEEEcCCCC-eeeEEEEcCCCCCHHHHHHHHhcc-CC--CCCceEEEeCCe--e-CCCCCCcccCCCCCCCCeEEEEe
Q 017480 5 TQIFIKSPSNS-LTTLTVGANQFETLNHLKRSLLSL-DQ--SLSSLYFTLNGK--I-LDESTPLFKNPQIAPLSTLYLRQ 77 (371)
Q Consensus 5 MQIFVk~~~g~-~~t~~l~v~~~~TV~~lK~~i~~~-gi--~~~~q~Li~~Gk--~-L~D~~tL~~~~~I~~~sTL~L~l 77 (371)
.-|||-.++.. -...+|.|.++.-|+.|-.+|-+. .+ ..++--|-..-| . |....|| ..|||+..+.|++..
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tL-DkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTL-DKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBH-HHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhh-hhhceeeeeeeeccC
Confidence 46888886652 246789999999999999998866 54 455554433332 2 3567899 999999999888754
No 316
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=30.46 E-value=42 Score=25.56 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=12.0
Q ss_pred CceeEcCCcccccCC
Q 017480 186 GIRFQCPITGLEFNG 200 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng 200 (371)
...|.||++++.|..
T Consensus 5 ~~~~~C~~C~~~f~~ 19 (124)
T 2dlq_A 5 SSGVECPTCHKKFLS 19 (124)
T ss_dssp CSSCCCTTTCCCCSS
T ss_pred CCCCCCCCCCCcCCC
Confidence 567899999988864
No 317
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=30.05 E-value=19 Score=19.86 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=9.9
Q ss_pred CCCCCCCCCcCC
Q 017480 225 SSCLVCHEEFGE 236 (371)
Q Consensus 225 ~~CpvCg~~f~~ 236 (371)
..|+.||+.|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 479999999974
No 318
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=29.97 E-value=28 Score=32.03 Aligned_cols=88 Identities=9% Similarity=0.147 Sum_probs=50.9
Q ss_pred cHHHHHHHHHcCCC-CCccC-ccCCCCCceeeeeeecCCCCCCCCCceeEcCCcccccCCceeEEEEeccCccccHHHHH
Q 017480 143 NKEALVHALLSKNL-PKQYS-YIKGLKDLINVKLSRVPGAEENGDGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALK 220 (371)
Q Consensus 143 nKeaILe~LL~k~~-~~~~~-HIksLKDlv~Lklt~n~~~~~~~~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alk 220 (371)
..|.+|.-|.+.+= ...-+ -..+.+-|+||.-.-...+. .....|.+|.....-..++ ..||+.|-..|+.
T Consensus 137 eae~lL~~lv~~gWl~~~~g~~~l~~R~l~El~~~l~~~~~----~~i~~C~iC~~iv~~g~~C---~~C~~~~H~~C~~ 209 (238)
T 3nw0_A 137 EAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYP----DAVKICNICHSLLIQGQSC---ETCGIRMHLPCVA 209 (238)
T ss_dssp HHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHHHCT----TTCCBCTTTCSBCSSCEEC---SSSCCEECHHHHH
T ss_pred HHHHHHHHHHHhcchhhhCCEEEecCccHHHHHHHHHHhcC----CCCCcCcchhhHHhCCccc---CccChHHHHHHHH
Confidence 45777777776531 00011 12233444444321111111 2345799998876533222 2499999999999
Q ss_pred Hhh----cCCCCCCCCCcCCC
Q 017480 221 EVK----SSSCLVCHEEFGEM 237 (371)
Q Consensus 221 evk----~~~CpvCg~~f~~~ 237 (371)
..- ...||.|+.++..+
T Consensus 210 ~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 210 KYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp HHTTTCSSCBCTTTCCBCCSC
T ss_pred HHHHhCCCCCCCCCCCCCCCC
Confidence 862 45899999998755
No 319
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=29.89 E-value=21 Score=19.37 Aligned_cols=12 Identities=33% Similarity=0.747 Sum_probs=9.5
Q ss_pred CCCCCCCCCcCC
Q 017480 225 SSCLVCHEEFGE 236 (371)
Q Consensus 225 ~~CpvCg~~f~~ 236 (371)
..|+.||+.|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 368999998875
No 320
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=29.86 E-value=47 Score=26.43 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=30.5
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHcC
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLSK 154 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~k 154 (371)
...|++..+++..|++ ..-|+.|-++-|.+||...
T Consensus 18 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~ 52 (118)
T 3hct_A 18 KYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDA 52 (118)
T ss_dssp GGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHH
T ss_pred CCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhC
Confidence 4679999999999965 4789999999999998764
No 321
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.83 E-value=39 Score=22.82 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.8
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHH
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALL 152 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL 152 (371)
...|.+..+.+..|++ ..=|+.|-++-|.+|+.
T Consensus 15 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVI-IECGHNFCKACITRWWE 47 (58)
T ss_dssp CCBCSSSCCBCSSCCC-CSSCCCCCHHHHHHHTT
T ss_pred CCCCccCCcccCccEe-CCCCCccCHHHHHHHHH
Confidence 4679999999999965 47899999999999964
No 322
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=29.47 E-value=52 Score=25.20 Aligned_cols=14 Identities=21% Similarity=0.707 Sum_probs=10.8
Q ss_pred cCCCCC--CCCCcCCC
Q 017480 224 SSSCLV--CHEEFGEM 237 (371)
Q Consensus 224 ~~~Cpv--Cg~~f~~~ 237 (371)
...|+. |++.|...
T Consensus 92 ~~~C~~~~C~~~f~~~ 107 (124)
T 1ubd_C 92 PYVCPFDGCNKKFAQS 107 (124)
T ss_dssp CCCCCSTTCCCCCSST
T ss_pred ceECCCCCCCCccCCH
Confidence 468974 99999764
No 323
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.32 E-value=25 Score=28.40 Aligned_cols=54 Identities=7% Similarity=0.012 Sum_probs=42.5
Q ss_pred CceeEcCCcccccCC-ceeEEEEeccCccccHHHHHHhhcC--CCCCCCCCcCCCceEE
Q 017480 186 GIRFQCPITGLEFNG-KYRFVAMRTCGHVLSTKALKEVKSS--SCLVCHEEFGEMDKIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng-~~rfV~L~~CG~V~Se~alkevk~~--~CpvCg~~f~~~DiI~ 241 (371)
...|.|-.++..|.. ...|+ ..=|.+++...+.+.-.. .|..|++++...+++.
T Consensus 30 ~~CF~C~~C~~~L~~~~~~~~--~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~~ 86 (122)
T 1m3v_A 30 SRCLKCSSCQAQLGDIGTSSY--TKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVMV 86 (122)
T ss_dssp HHHHCCSSSCCCTTTSEECCE--EETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESSS
T ss_pred hhCCCcCCCCCcccccCCeEE--EECCeeecHHHHHHHcCCCCccccCCCCcCchheEE
Confidence 346899999999973 23444 567999999999988766 8999999999877654
No 324
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.81 E-value=50 Score=23.15 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=9.2
Q ss_pred cCCCCCCCCCc
Q 017480 224 SSSCLVCHEEF 234 (371)
Q Consensus 224 ~~~CpvCg~~f 234 (371)
...|++||+.|
T Consensus 68 ~~~C~~C~k~F 78 (79)
T 2dlk_A 68 DYICEFSGPSS 78 (79)
T ss_dssp CCSCCSSSCCC
T ss_pred CeeCCCCCCCC
Confidence 46899999887
No 325
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=28.59 E-value=26 Score=25.70 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=23.4
Q ss_pred eccCccccHHHHHHhhcCCCCCCCCCcCC---CceEEecCChHHHHH
Q 017480 208 RTCGHVLSTKALKEVKSSSCLVCHEEFGE---MDKILINGNEEEISV 251 (371)
Q Consensus 208 ~~CG~V~Se~alkevk~~~CpvCg~~f~~---~DiI~Lnp~~ee~~~ 251 (371)
+.|+-|..+. .||+|+..-++ .=|++++|..-++++
T Consensus 5 ~~C~~v~~~~--------~CpnC~~~tt~~~~G~v~i~dP~~SwvAk 43 (59)
T 3lpe_B 5 LKCKYLTNDE--------ICPICHSPTSENWIGLLIVINPEKSEIAK 43 (59)
T ss_dssp TTTCBEESSS--------BCTTTCCBEESCEECEEEESCTTTCHHHH
T ss_pred ccCCcccCCC--------CCCCCCCCccCCEeeEEEEeCCchhHHHH
Confidence 4577776554 69999864221 126777898777753
No 326
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.12 E-value=28 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=28.6
Q ss_pred ccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 120 CNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 120 ~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
..|++.++.+..|++. .-|+.|-.+-|.+||..
T Consensus 16 ~~C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~~ 48 (71)
T 2d8t_A 16 PECAICLQTCVHPVSL-PCKHVFCYLCVKGASWL 48 (71)
T ss_dssp CBCSSSSSBCSSEEEE-TTTEEEEHHHHHHCTTC
T ss_pred CCCccCCcccCCCEEc-cCCCHHHHHHHHHHHHC
Confidence 5699999999999665 68999999999998753
No 327
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=27.26 E-value=2e+02 Score=24.00 Aligned_cols=67 Identities=18% Similarity=0.163 Sum_probs=46.7
Q ss_pred EEEEEcCCCCe---eeEEEEcCCCCCHHHHHHHHhcc--C-------CCCCceEEEeCCeeCC--CCCCcccCCCCCCCC
Q 017480 6 QIFIKSPSNSL---TTLTVGANQFETLNHLKRSLLSL--D-------QSLSSLYFTLNGKILD--ESTPLFKNPQIAPLS 71 (371)
Q Consensus 6 QIFVk~~~g~~---~t~~l~v~~~~TV~~lK~~i~~~--g-------i~~~~q~Li~~Gk~L~--D~~tL~~~~~I~~~s 71 (371)
||.-=+-+.|+ ..+.+-+.+++|.++|=+++... + |..+.-.-..+|+|.. .+.+| ++-||..-|
T Consensus 24 qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSL-aenG~~HKs 102 (119)
T 3u52_E 24 QLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASL-KEQGIDHKS 102 (119)
T ss_dssp EEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBT-TTTTCCTTE
T ss_pred EEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhH-HHcCCCchh
Confidence 43333445442 35678888999999998876543 3 4554545567999995 46899 999999999
Q ss_pred eE
Q 017480 72 TL 73 (371)
Q Consensus 72 TL 73 (371)
.|
T Consensus 103 ~l 104 (119)
T 3u52_E 103 ML 104 (119)
T ss_dssp EE
T ss_pred eE
Confidence 44
No 328
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=27.09 E-value=23 Score=21.03 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=9.1
Q ss_pred cCCCCCCCCCcCC
Q 017480 224 SSSCLVCHEEFGE 236 (371)
Q Consensus 224 ~~~CpvCg~~f~~ 236 (371)
...|+.|++.|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 3468888888764
No 329
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=27.01 E-value=42 Score=24.49 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=12.7
Q ss_pred CCceeEcCCcccccCC
Q 017480 185 DGIRFQCPITGLEFNG 200 (371)
Q Consensus 185 ~~~~~~CPVT~~e~ng 200 (371)
...+|.|+++++.|..
T Consensus 5 ~~~~~~C~~C~~~f~~ 20 (96)
T 2dmd_A 5 SSGPHKCEVCGKCFSR 20 (96)
T ss_dssp CCCCCCBTTTTBCCCC
T ss_pred CCcCeECCCCCCccCC
Confidence 3567999999998864
No 330
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=26.76 E-value=28 Score=19.07 Aligned_cols=13 Identities=15% Similarity=0.373 Sum_probs=10.3
Q ss_pred CCCCCCCCCcCCC
Q 017480 225 SSCLVCHEEFGEM 237 (371)
Q Consensus 225 ~~CpvCg~~f~~~ 237 (371)
..|+.||+.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1klr_A 3 YQCQYCEFRSADS 15 (30)
T ss_dssp CCCSSSSCCCSCS
T ss_pred ccCCCCCCccCCH
Confidence 4699999998754
No 331
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=26.75 E-value=40 Score=24.50 Aligned_cols=43 Identities=23% Similarity=0.481 Sum_probs=24.4
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCC
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEM 237 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~ 237 (371)
.+|.|+++++.|.....+.. |+ +.-...+...|+.|++.|...
T Consensus 2 k~~~C~~C~k~f~~~~~L~~-----H~---~~H~~~~~~~C~~C~k~f~~~ 44 (88)
T 1llm_C 2 KPFQCRICMRNFSRSDHLTT-----HI---RTHTGEKPFACDICGRKFARS 44 (88)
T ss_dssp CCEECTTTCCEESCHHHHHH-----HH---HHHHCCCCEECTTTCCEESSH
T ss_pred CCCcCCCCCCccCCHHHHHH-----HH---HHcCCCCCccCCCCCCccCCH
Confidence 36899999988865321100 00 000011246899999999753
No 332
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=26.27 E-value=38 Score=24.33 Aligned_cols=36 Identities=28% Similarity=0.515 Sum_probs=22.8
Q ss_pred ceeEcCCcccccCCceeEEEEeccCccccHHHHHH-------hhcCCCCCCCCCcCCC
Q 017480 187 IRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKE-------VKSSSCLVCHEEFGEM 237 (371)
Q Consensus 187 ~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alke-------vk~~~CpvCg~~f~~~ 237 (371)
.+|.|+++++.|... ..|+. .+...|++|++.|...
T Consensus 33 ~~~~C~~C~~~f~~~---------------~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 75 (90)
T 1a1h_A 33 KPFQCRICMRNFSRS---------------DHLTTHIRTHTGEKPFACDICGRKFARS 75 (90)
T ss_dssp CCEECTTTCCEESCH---------------HHHHHHHHHHHCCCCEECTTTCCEESSH
T ss_pred CCccCCCCCcccCCH---------------HHHHHHHHHcCCCCCccCCCCCchhCCH
Confidence 458888887776542 22221 1245899999999753
No 333
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=26.01 E-value=12 Score=28.53 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=21.9
Q ss_pred hcCCCCCCCCCcCCCceEEec--CChHHHHHHHHHHH
Q 017480 223 KSSSCLVCHEEFGEMDKILIN--GNEEEISVLRERME 257 (371)
Q Consensus 223 k~~~CpvCg~~f~~~DiI~Ln--p~~ee~~~l~~rm~ 257 (371)
+...|| ||+.+.-...=++- .+.+|...++.+|+
T Consensus 20 kT~~C~-CG~~~~~~k~rif~~~~d~~eA~e~~~~lq 55 (71)
T 1gh9_A 20 KTRKCV-CGRTVNVKDRRIFGRADDFEEASELVRKLQ 55 (71)
T ss_dssp SEEEET-TTEEEECCSSSCBSCCSSHHHHHHHHHHHS
T ss_pred cEEECC-CCCeeeeceEEEEEecCCHHHHHHHHHHHH
Confidence 456898 99987654432333 45577777777774
No 334
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=25.99 E-value=25 Score=26.61 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=24.2
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGE 236 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~ 236 (371)
..+|.|+++++.|.....+.. |+-. -.+...|++|++.|..
T Consensus 14 ~~~~~C~~C~~~f~~~~~l~~-----H~~~-----H~~~~~C~~C~~~f~~ 54 (107)
T 1wjp_A 14 KEVYQCRLCNAKLSSLLEQGS-----HERL-----CRNAAVCPYCSLRFFS 54 (107)
T ss_dssp CCCCBCTTTCCBCSSHHHHHH-----HHHH-----HHHSBCCTTTCCCBSS
T ss_pred CcCeECCCCCCccCCHHHHHH-----HHHH-----CCCCccCCCCCCccCC
Confidence 457999999998875321100 0000 0135678888888864
No 335
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.93 E-value=74 Score=25.46 Aligned_cols=51 Identities=14% Similarity=0.312 Sum_probs=38.4
Q ss_pred CceeEcCCcccccCC-ceeEEEEeccCccccHHHHHHhhcC--CCCCCCCCcCCCc
Q 017480 186 GIRFQCPITGLEFNG-KYRFVAMRTCGHVLSTKALKEVKSS--SCLVCHEEFGEMD 238 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng-~~rfV~L~~CG~V~Se~alkevk~~--~CpvCg~~f~~~D 238 (371)
..-|.|-.++..|+. ...|+ ..=|.+++...+.+.-.. .|..|++++...|
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~--~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLY--YKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE 80 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEE--EETTEEECHHHHHHHHCCCEECTTTCCEECTTS
T ss_pred HHHcccCcCCCccccCCCeEE--EECCEEeecCchhhhCCCccChhhcCCccCccc
Confidence 356889999888863 23454 357889999999988766 8999999887644
No 336
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=25.58 E-value=56 Score=28.40 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=40.0
Q ss_pred EEEcCCCCCHHHHHHHHhcc--CCC---------CCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCC
Q 017480 20 TVGANQFETLNHLKRSLLSL--DQS---------LSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGG 82 (371)
Q Consensus 20 ~l~v~~~~TV~~lK~~i~~~--gi~---------~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~ 82 (371)
.+++++ .||.+|.+.|... ++. .....+..||.......- .++-|+++++|.+...+-||
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~--~dt~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG--LSTPLSPGATLDLFPPVAGG 87 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG--GGCBCCTTCEEEEECSCCSE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC--CccCCCCCCEEEEECccccc
Confidence 355555 7999999988754 121 134567889998765321 34568999999876666554
No 337
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=25.58 E-value=20 Score=28.26 Aligned_cols=17 Identities=47% Similarity=0.966 Sum_probs=14.2
Q ss_pred CceeEcCCcccccCCce
Q 017480 186 GIRFQCPITGLEFNGKY 202 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~ 202 (371)
+-.|.||+++.+|-|++
T Consensus 49 ~F~FkCP~CgEEFyG~~ 65 (95)
T 2k5c_A 49 EFVFKCPVCGEEFYGKT 65 (95)
T ss_dssp HSEEECTTTCCEEETTS
T ss_pred HHhhcCCCccHHHhccc
Confidence 45799999999998864
No 338
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.17 E-value=26 Score=19.49 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=10.4
Q ss_pred CCCCCCCCCcCCC
Q 017480 225 SSCLVCHEEFGEM 237 (371)
Q Consensus 225 ~~CpvCg~~f~~~ 237 (371)
..|+.||+.|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (30)
T 1paa_A 3 YACGLCNRAFTRR 15 (30)
T ss_dssp SBCTTTCCBCSSS
T ss_pred cCCcccCcccCCh
Confidence 4699999999754
No 339
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=25.17 E-value=28 Score=20.54 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=10.4
Q ss_pred CCCCCCCCCcCCC
Q 017480 225 SSCLVCHEEFGEM 237 (371)
Q Consensus 225 ~~CpvCg~~f~~~ 237 (371)
..|++||+.|...
T Consensus 3 ~~C~~C~k~F~~~ 15 (33)
T 1rim_A 3 FACPECPKRFMRS 15 (33)
T ss_dssp CCCSSSCCCCSSH
T ss_pred ccCCCCCchhCCH
Confidence 4799999999753
No 340
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=25.09 E-value=46 Score=23.29 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=8.6
Q ss_pred eeEcCCcccccCC
Q 017480 188 RFQCPITGLEFNG 200 (371)
Q Consensus 188 ~~~CPVT~~e~ng 200 (371)
+|.|+++++.|..
T Consensus 1 ~~~C~~C~~~f~~ 13 (82)
T 2kmk_A 1 SFDCKICGKSFKR 13 (82)
T ss_dssp CEECSSSCCEESS
T ss_pred CccCCCCcccccC
Confidence 3677777776653
No 341
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=24.66 E-value=3 Score=34.06 Aligned_cols=36 Identities=25% Similarity=0.560 Sum_probs=24.8
Q ss_pred eccCccccHHHHHH-----hh--cCCCCCCCCCcCCCceEEecCCh
Q 017480 208 RTCGHVLSTKALKE-----VK--SSSCLVCHEEFGEMDKILINGNE 246 (371)
Q Consensus 208 ~~CG~V~Se~alke-----vk--~~~CpvCg~~f~~~DiI~Lnp~~ 246 (371)
..|+||++.--+.= .. .+.|+.||+. +|-|.|.|.+
T Consensus 61 ~nC~HvIA~HeYtF~V~~~yQeY~M~ClLCG~a---edsiSilPdD 103 (106)
T 2jox_A 61 KNCHHVIARHEYTFSIMDEFQEYTMLCLLCGKA---EDTISILPDD 103 (106)
T ss_dssp TTTCCEEEEEEEEEEEETTEEEEEEEETTTEEE---EEEEECCTTC
T ss_pred CCCceEeeeeeEEEEEecCeeeeeeeeeeeCCc---ccceeeCCCC
Confidence 46888876543321 11 5789999985 7889999864
No 342
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=24.38 E-value=78 Score=24.82 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=30.5
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHHc
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
...|++...++.+|++ ..-|+.|-++-|.+||-.
T Consensus 23 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 23 SISCQICEHILADPVE-TSCKHLFCRICILRCLKV 56 (116)
T ss_dssp HTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhH
Confidence 4679999999999966 588999999999999976
No 343
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.31 E-value=56 Score=28.03 Aligned_cols=50 Identities=10% Similarity=0.202 Sum_probs=39.5
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCce
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMDK 239 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~Di 239 (371)
...|.|-.++..|.+.. | . .=|.+++...+.+.-...|..|++++...++
T Consensus 85 ~~CF~C~~C~~~L~~~~-f--~-~~g~~yC~~~y~~~f~~kC~~C~~~I~~~~~ 134 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERC-F--S-RGESVYCKDDFFKRFGTKCAACQLGIPPTQV 134 (182)
T ss_dssp SSTTSCTTTCCCCSSCC-E--E-ETTEEECHHHHHHTTSCCCTTTCCCCCSSCC
T ss_pred cccCccCCCCCccCCCc-e--e-ECCEeeecCccccccccccccCCCccCCCce
Confidence 35688999999998764 4 2 4689999999998888889999998876554
No 344
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.29 E-value=27 Score=20.53 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=9.5
Q ss_pred cCCCCCCCCCcCC
Q 017480 224 SSSCLVCHEEFGE 236 (371)
Q Consensus 224 ~~~CpvCg~~f~~ 236 (371)
...|++|++.|..
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 3568888888864
No 345
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=23.80 E-value=41 Score=25.73 Aligned_cols=25 Identities=24% Similarity=0.672 Sum_probs=16.6
Q ss_pred CceeEcCCcccccCCceeEEEEeccC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCG 211 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG 211 (371)
...|.||.+++. .=+-.-+.||.|+
T Consensus 25 ~~ky~C~fCgk~-~vkR~a~GIW~C~ 49 (73)
T 1ffk_W 25 KKKYKCPVCGFP-KLKRASTSIWVCG 49 (73)
T ss_pred ccCccCCCCCCc-eeEEEEeEEEECC
Confidence 567899999874 1133457788654
No 346
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=23.76 E-value=88 Score=24.33 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=27.3
Q ss_pred ccccCCCCCCCCCe-----------------eeCCCCceecHHHHHHHHHc
Q 017480 120 CNCALSNEPLREPC-----------------VIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 120 ~~CaLS~~PL~~PI-----------------V~~~lG~LYnKeaILe~LL~ 153 (371)
..|++.+++|..|. +.-.-|+.|-.+.|.+||..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~ 76 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCN 76 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHH
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHc
Confidence 46999999998763 14456999999999999854
No 347
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=23.55 E-value=58 Score=24.84 Aligned_cols=53 Identities=19% Similarity=0.313 Sum_probs=40.9
Q ss_pred CceeEcCCcccccCCceeEEEEeccCccccHHHHHHhhcCCCCCCCCCcCCCc-eEE
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEVKSSSCLVCHEEFGEMD-KIL 241 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkevk~~~CpvCg~~f~~~D-iI~ 241 (371)
..-|.|-.+++.|.+. .|+ ..=|.+++...+.++-...|..|++++...| +|.
T Consensus 31 ~~CF~C~~C~~~L~~~-~~~--~~~g~~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~ 84 (101)
T 2cup_A 31 DTCFRCAKCLHPLANE-TFV--AKDNKILCNKCTTREDSPKCKGCFKAIVAGDQNVE 84 (101)
T ss_dssp TTTCCCSSSCCCTTSS-CCE--EETTEEECHHHHTTCCCCBCSSSCCBCCSSSCEEE
T ss_pred hcCCcccccCCCCCcC-eeE--CcCCEEEChhHhhhhcCCccccCCCccccCCeEEE
Confidence 3468899999988654 333 3468999999999888889999999998655 444
No 348
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=23.37 E-value=26 Score=28.33 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=40.8
Q ss_pred CCceeEcCCcccccCCceeEEEEeccCccccHHHHHHh--hcCCCCCCCCCcCCCceEEecCC
Q 017480 185 DGIRFQCPITGLEFNGKYRFVAMRTCGHVLSTKALKEV--KSSSCLVCHEEFGEMDKILINGN 245 (371)
Q Consensus 185 ~~~~~~CPVT~~e~ng~~rfV~L~~CG~V~Se~alkev--k~~~CpvCg~~f~~~DiI~Lnp~ 245 (371)
.-++|-|-.+=.+..| .++=.-|.++.+||..+ .+..|++|+++.-..=.|...|+
T Consensus 25 ~~G~~nCKsCWf~~k~-----LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~PS 82 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG-----LVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPT 82 (99)
T ss_dssp CSCCCCCCSSCSCCSS-----EEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSCC
T ss_pred ccCcccChhhccccCC-----eeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcCCC
Confidence 4678888888776664 23445699999999998 47899999998865534444443
No 349
>2jx5_A GLUB(S27A); ubiquitin, ribosome, recombination, evolution, ribosomal protein; NMR {Giardia lamblia atcc 50803}
Probab=22.99 E-value=2.2e+02 Score=20.73 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=50.3
Q ss_pred eEEEEEcCCCCeeeEEEEcCCCCCHHHHHHHHhccCCCCCceEEEeCCeeCCCCCCcccCCCCCCCCeEEEEeeecCCCC
Q 017480 5 TQIFIKSPSNSLTTLTVGANQFETLNHLKRSLLSLDQSLSSLYFTLNGKILDESTPLFKNPQIAPLSTLYLRQRVFGGGG 84 (371)
Q Consensus 5 MQIFVk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~gi~~~~q~Li~~Gk~L~D~~tL~~~~~I~~~sTL~L~lrL~G~~~ 84 (371)
|-+.||-++- ++.++......-++|-..+...|. .|.|--.|+.|.+..-| .+...|+-.++--|.|-
T Consensus 1 mlvivrlqdq---~lpfelpaga~asqls~lls~~gm---~fslhtqgrvlseaael------ndkmvidafvpadgag~ 68 (69)
T 2jx5_A 1 MLVIVRLQDQ---TLPFELPAGARASQLSNLLSSSGM---AFSLHTQGRVLSEAAEL------NDKMVIDAFVPADGAGL 68 (69)
T ss_dssp CEEEEEETTE---EEEEECCTTCCHHHHHHHHHHSSC---CCEEEETTEECCTTCCC------CSSEEEEEECCCTTSCC
T ss_pred CeEEEEeccc---cccccccccccHHHHHHHHhhcCc---eEEEeecchhhhhHHhh------CCceEEEEeecCCCCCC
Confidence 6688888877 688898888899999887776674 46788899999876544 34455777766666553
No 350
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.57 E-value=18 Score=19.73 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=5.0
Q ss_pred eEcCCcccccC
Q 017480 189 FQCPITGLEFN 199 (371)
Q Consensus 189 ~~CPVT~~e~n 199 (371)
|.|+++++.|.
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 44444444443
No 351
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.78 E-value=1.6e+02 Score=23.54 Aligned_cols=51 Identities=12% Similarity=0.088 Sum_probs=36.0
Q ss_pred EEcCCCCeeeEEEEcCCCCCHHHHHHHHhcc-CCCCCceEEEeCC-------eeCCCCCCc
Q 017480 9 IKSPSNSLTTLTVGANQFETLNHLKRSLLSL-DQSLSSLYFTLNG-------KILDESTPL 61 (371)
Q Consensus 9 Vk~~~g~~~t~~l~v~~~~TV~~lK~~i~~~-gi~~~~q~Li~~G-------k~L~D~~tL 61 (371)
|=..+|. +.+|.|++++|+.++=+.|..+ +...+.-+=++.- +.|+|...|
T Consensus 14 vf~~Dgs--sksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~v 72 (100)
T 1wgr_A 14 VYSEDGA--CRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESV 72 (100)
T ss_dssp EEETTSC--EEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCH
T ss_pred EEecCCC--EEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhH
Confidence 3346775 6689999999999999999999 7655555444433 446666655
No 352
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=22.57 E-value=89 Score=23.13 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=12.3
Q ss_pred CceeEcCCcccccCC
Q 017480 186 GIRFQCPITGLEFNG 200 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng 200 (371)
..+|.|+++++.|..
T Consensus 15 ~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 15 KKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCBCSSSCCBCSS
T ss_pred CcCeECCCCCCccCC
Confidence 567999999998864
No 353
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.31 E-value=17 Score=25.03 Aligned_cols=9 Identities=22% Similarity=0.431 Sum_probs=6.6
Q ss_pred eeEcCCccc
Q 017480 188 RFQCPITGL 196 (371)
Q Consensus 188 ~~~CPVT~~ 196 (371)
.+.||.++-
T Consensus 5 ~~~CP~C~~ 13 (50)
T 1pft_A 5 QKVCPACES 13 (50)
T ss_dssp CCSCTTTSC
T ss_pred cEeCcCCCC
Confidence 467999865
No 354
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=21.97 E-value=61 Score=27.02 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=29.0
Q ss_pred CccccCCCCCCCCCeeeCCCCceecHHHHHHHHH
Q 017480 119 WCNCALSNEPLREPCVIDKLGTIFNKEALVHALL 152 (371)
Q Consensus 119 w~~CaLS~~PL~~PIV~~~lG~LYnKeaILe~LL 152 (371)
-..|.+.++.|.+|+ ...-|+.|.+.-|.+||-
T Consensus 31 ~~~C~IC~~~~~~pv-~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 31 KYLCSACRNVLRRPF-QAQCGHRYCSFCLASILS 63 (141)
T ss_dssp GGBCTTTCSBCSSEE-ECTTSCEEEHHHHHHHGG
T ss_pred CcCCCCCChhhcCcE-ECCCCCccCHHHHHHHHh
Confidence 356999999999995 568999999999999974
No 355
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=21.69 E-value=1.3e+02 Score=20.93 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=28.7
Q ss_pred CccccCCCCCCC--CCeeeCCCCceecHHHHHHHHHc
Q 017480 119 WCNCALSNEPLR--EPCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 119 w~~CaLS~~PL~--~PIV~~~lG~LYnKeaILe~LL~ 153 (371)
-..|++.++.+. .+++.-.=|++|-.+-|.+||..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~ 50 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT 50 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 467999999986 34566678999999999999864
No 356
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=21.47 E-value=24 Score=28.22 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=15.3
Q ss_pred CceeEcCCcccccCCceeEEEEecc
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTC 210 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~C 210 (371)
...|.||.+++. .=+-.-+.||.|
T Consensus 34 ~~ky~CpfCgk~-~vkR~a~GIW~C 57 (92)
T 3iz5_m 34 HSKYFCEFCGKF-AVKRKAVGIWGC 57 (92)
T ss_dssp HSCBCCTTTCSS-CBEEEETTEEEC
T ss_pred hccccCcccCCC-eeEecCcceEEc
Confidence 467899999986 212234557744
No 357
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.07 E-value=40 Score=18.33 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=5.3
Q ss_pred eEcCCcccccC
Q 017480 189 FQCPITGLEFN 199 (371)
Q Consensus 189 ~~CPVT~~e~n 199 (371)
|.|+++++.|.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 44555554443
No 358
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=21.04 E-value=31 Score=20.10 Aligned_cols=12 Identities=25% Similarity=0.653 Sum_probs=9.3
Q ss_pred CCCCCCCCCcCC
Q 017480 225 SSCLVCHEEFGE 236 (371)
Q Consensus 225 ~~CpvCg~~f~~ 236 (371)
..|+.||+.|..
T Consensus 3 ~~C~~C~k~f~~ 14 (32)
T 2kfq_A 3 FACPACPKRFMR 14 (32)
T ss_dssp SSSSSSCTTHHH
T ss_pred CCCCCCCcccCC
Confidence 468999988863
No 359
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.88 E-value=39 Score=18.44 Aligned_cols=11 Identities=36% Similarity=0.733 Sum_probs=5.6
Q ss_pred eEcCCcccccC
Q 017480 189 FQCPITGLEFN 199 (371)
Q Consensus 189 ~~CPVT~~e~n 199 (371)
|.|+++++.|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 45555555443
No 360
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=20.61 E-value=26 Score=28.04 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=15.7
Q ss_pred CceeEcCCcccccCCceeEEEEeccC
Q 017480 186 GIRFQCPITGLEFNGKYRFVAMRTCG 211 (371)
Q Consensus 186 ~~~~~CPVT~~e~ng~~rfV~L~~CG 211 (371)
...|.||.+++. .=+-.-+.||.|+
T Consensus 34 ~~ky~CpfCgk~-~vkR~a~GIW~C~ 58 (92)
T 3izc_m 34 HARYDCSFCGKK-TVKRGAAGIWTCS 58 (92)
T ss_dssp HSCCCCSSSCSS-CCEEEETTEEECT
T ss_pred hcCCcCCCCCCc-eeeecccceEEcC
Confidence 467899999976 2123345577543
No 361
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=20.54 E-value=92 Score=24.82 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=28.2
Q ss_pred ccccCCCCCCCCC-----------------eeeCCCCceecHHHHHHHHHc
Q 017480 120 CNCALSNEPLREP-----------------CVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 120 ~~CaLS~~PL~~P-----------------IV~~~lG~LYnKeaILe~LL~ 153 (371)
..|++..+++..| ++.-.-|+.|-.+-|.+||..
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT 88 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc
Confidence 4799999999876 444567999999999999865
No 362
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.40 E-value=76 Score=25.65 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=8.9
Q ss_pred cC-CCCCCCCCc
Q 017480 224 SS-SCLVCHEEF 234 (371)
Q Consensus 224 ~~-~CpvCg~~f 234 (371)
.. .||.||.+.
T Consensus 89 ~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 89 DYGVCEKCHSKN 100 (119)
T ss_dssp TTCCCSSSSSCC
T ss_pred CCCcCccccCCC
Confidence 45 899999874
No 363
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.09 E-value=81 Score=23.39 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=27.3
Q ss_pred cccCCCCCCCC--------------CeeeCCCCceecHHHHHHHHHc
Q 017480 121 NCALSNEPLRE--------------PCVIDKLGTIFNKEALVHALLS 153 (371)
Q Consensus 121 ~CaLS~~PL~~--------------PIV~~~lG~LYnKeaILe~LL~ 153 (371)
.|++..++|.. +++...=|+.|-++-|.+||..
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~ 63 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ 63 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh
Confidence 59999999977 4555568999999999999754
Done!