BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017484
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 186/289 (64%), Positives = 230/289 (79%), Gaps = 1/289 (0%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
+N+G+DCPVF LFEFC Y G ++ A +LNN++CDIAINWAGGLHHAKK EASGFCY+
Sbjct: 88 FNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYV 147
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND+V+GILELLKYH RVLYIDID+HHGDGV+EAFY TDRVMTVSFHK+G+ FFPGTGD+
Sbjct: 148 NDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMY 207
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
E+G G++Y +NVPL+DGIDD S+ LF+ +I++VV+ Y P IVLQCGADSL DRLG
Sbjct: 208 EVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLG 267
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
CFNLSI GH ECV +VK FN+PLLV GGGGYT NVARCWT ET +L++ + E+P +E
Sbjct: 268 CFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPYSE 327
Query: 272 YIKYFAPECSLRI-PNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQ 319
Y +YFAP+ +L + IEN NS+ YL I+ + ENL+ + HAPSVQ
Sbjct: 328 YFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/368 (54%), Positives = 252/368 (68%), Gaps = 59/368 (16%)
Query: 3 SKDKISYFYDGDVGSVYFGPNHPMK------------------------PHRL------- 31
+K K+ Y+YDGD+G+ Y+G HPMK PH+
Sbjct: 1 AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTK 60
Query: 32 ---------------------------YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNN 64
+N+GEDCPVF+ LFEFCQ+ GG++ A +LN
Sbjct: 61 YHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNR 120
Query: 65 QLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEA 124
Q D+A+NWAGGLHHAKK EASGFCY+ND+VL ILELLKYH RVLYIDID+HHGDGVEEA
Sbjct: 121 QQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEA 180
Query: 125 FYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTII 184
FY TDRVMTVSFHK+G+ +FPGTGD+++IG +GK+YA+N P++DGIDD S+ ++FK II
Sbjct: 181 FYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 239
Query: 185 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 244
SKV+E Y P A+VLQCGADSL+GDRLGCFNL++ GHA+CV VK FNLPLL+ GGGGYT
Sbjct: 240 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTI 299
Query: 245 ENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQ 304
NVARCWT ET + LD E+PNE+P N+Y +YF P+ L I ++ N N+ Y+ IK +
Sbjct: 300 RNVARCWTYETAVALDCEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQR 359
Query: 305 VLENLRSI 312
+ ENLR +
Sbjct: 360 LFENLRML 367
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 280 bits (717), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 189/281 (67%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG DCP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 96 YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 280 bits (717), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 189/281 (67%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG DCP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 97 YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 156
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 157 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 216
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 217 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 276
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 277 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 336
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 337 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 377
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 280 bits (716), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 189/281 (67%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG DCP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 96 YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 280 bits (716), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 189/281 (67%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG DCP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 96 YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 280 bits (716), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 189/281 (67%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG DCP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 96 YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 126/281 (44%), Positives = 189/281 (67%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG +CP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 96 YGLGYECPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 126/281 (44%), Positives = 189/281 (67%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG DCP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 96 YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGG+ N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGFNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 126/281 (44%), Positives = 189/281 (67%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG +CP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 96 YGLGYNCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 277 bits (709), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 126/281 (44%), Positives = 188/281 (66%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG CP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 96 YGLGYACPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 276 bits (707), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 126/281 (44%), Positives = 188/281 (66%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG CP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 96 YGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 126/281 (44%), Positives = 188/281 (66%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG DCP E +F++ G TI AA+ L + +C +AINW+GG H AKK EASGFCY+
Sbjct: 96 YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHAAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 276 bits (707), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 126/281 (44%), Positives = 188/281 (66%)
Query: 32 YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYI 91
Y LG CP E +F++ G TI AA+ L + +C +AINW+GG HHAKK EASGFCY+
Sbjct: 96 YGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYL 155
Query: 92 NDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVK 151
ND VLGIL L + R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF FFPGTGDV
Sbjct: 156 NDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVS 215
Query: 152 EIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLG 211
++G +G++Y++NVP++DGI D + ++ ++++ +V + + P A+VLQ GAD++AGD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 212 CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENE 271
FN++ G +C++++ ++ L L+ GGGGY N ARCWT TG++L L +EIP++E
Sbjct: 276 SFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHE 335
Query: 272 YIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
+ + P+ L I + N + I + NL+ +
Sbjct: 336 FFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3R|B Chain B, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3S|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Saha
Length = 375
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 5/246 (2%)
Query: 25 PMKPHRLYNLG-EDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKC 83
P YN+G + PV +F + G T+ A ++A N AGG+HHA K
Sbjct: 79 PKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLK--GNVAFNPAGGMHHAFKS 136
Query: 84 EASGFCYINDLVLGILELLKY-HARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDL 142
A+GFCYIN+ +GI L K R+LYID+D HH DGV+EAFY TD+V +S H+ +
Sbjct: 137 RANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEY 196
Query: 143 FFP-GTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCG 201
FP G ++EIGE +GK Y +N+PL G++D F + + V E + P +LQ G
Sbjct: 197 AFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLG 256
Query: 202 ADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 261
D L D L FNLS + V++ + GGGGY +AR WT+ L
Sbjct: 257 TDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGR 316
Query: 262 ELPNEI 267
E+P ++
Sbjct: 317 EVPEKL 322
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus
Length = 375
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 131/246 (53%), Gaps = 5/246 (2%)
Query: 25 PMKPHRLYNLG-EDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKC 83
P YN+G + PV +F + G T+ A ++A N AGG+HHA K
Sbjct: 79 PKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLK--GNVAFNPAGGMHHAFKS 136
Query: 84 EASGFCYINDLVLGILELLKY-HARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDL 142
A+GFCYIN+ +GI L K R+LYID+D HH DGV+EAFY TD+V +S H+ +
Sbjct: 137 RANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEY 196
Query: 143 FFP-GTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCG 201
FP G ++EIGE +GK Y +N+PL G++D F + + V E + P +LQ G
Sbjct: 197 AFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLG 256
Query: 202 ADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 261
D L D L FNLS + V++ + GGGGY +AR WT+ L
Sbjct: 257 TDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGR 316
Query: 262 ELPNEI 267
E+P ++
Sbjct: 317 EVPEKL 322
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQO|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Muation Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQV|A Chain A, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
pdb|2VQV|B Chain B, Structure Of Hdac4 Catalytic Domain With A
Gain-Of-Function Mutation Bound To A Hydroxamic Acid
Inhibitor
Length = 413
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 78 HHAKKCEASGFCYINDLVLG--ILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVS 135
HHA++ GFCY N + + +L+ +++L +D DVHHG+G ++AFY V+ +S
Sbjct: 158 HHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMS 217
Query: 136 FHKFGDL-FFPGTGDVKEIGEREGKFYAINVPLKDGID----DTSFTRLFKTIISKVVET 190
H++ D FFPG+G E+G G + +N+ G+D D + F+T++ +
Sbjct: 218 LHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASE 277
Query: 191 YAPGAIVLQCGADSLAG--DRLGCFNLSIDGHAECVRFVKK 229
+AP +++ G D++ G LG +NLS A C ++ K
Sbjct: 278 FAPDVVLVSSGFDAVEGHPTPLGGYNLS----ARCFGYLTK 314
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
pdb|2VQQ|B Chain B, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To-
Alanine Mutant) Bound To A Trifluoromethylketone
Inhbitor
Length = 413
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 78 HHAKKCEASGFCYINDLVLG--ILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVS 135
HHA++ GFCY N + + +L+ +++L +D DVHHG+G ++AFY V+ +S
Sbjct: 158 HHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMS 217
Query: 136 FHKFGDL-FFPGTGDVKEIGEREGKFYAINVPLKDGID----DTSFTRLFKTIISKVVET 190
H++ D FFPG+G E+G G + +N+ G+D D + F+T++ +
Sbjct: 218 LHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASE 277
Query: 191 YAPGAIVLQCGADSLAG--DRLGCFNLSIDGHAECVRFVKK 229
+AP +++ G D++ G LG +NLS A C ++ K
Sbjct: 278 FAPDVVLVSSGFDAVEGHPTPLGGYNLS----ARCFGYLTK 314
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With
Gain-Of-Function Mutation His332tyr)
Length = 413
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 78 HHAKKCEASGFCYINDLVLG--ILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVS 135
HHA++ GFCY N + + +L+ +++L +D DVHHG+G ++AFY V+ +S
Sbjct: 158 HHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMS 217
Query: 136 FHKFGDL-FFPGTGDVKEIGEREGKFYAINVPLKDGID----DTSFTRLFKTIISKVVET 190
H++ D FFPG+G E+G G + +N+ G+D D + F+T++ +
Sbjct: 218 LHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASE 277
Query: 191 YAPGAIVLQCGADSLAG--DRLGCFNLSIDGHAECVRFVKK 229
+AP +++ G D++ G LG +NLS A C ++ K
Sbjct: 278 FAPDVVLVSSGFDAVEGHPTPLGGYNLS----ARCFGYLTK 314
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A
Trifluoromethylketone Inhbitor
pdb|2VQM|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Hydroxamic
Acid Inhbitor
Length = 413
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 13/161 (8%)
Query: 78 HHAKKCEASGFCYINDLVLG--ILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVS 135
HHA++ GFCY N + + +L+ +++L +D DVHHG+G ++AFY V+ +S
Sbjct: 158 HHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMS 217
Query: 136 FHKFGDL-FFPGTGDVKEIGEREGKFYAINVPLKDGID----DTSFTRLFKTIISKVVET 190
H++ D FFPG+G E+G G + +N+ G+D D + F+T++ +
Sbjct: 218 LHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASE 277
Query: 191 YAPGAIVLQCGADSLAG--DRLGCFNLSIDGHAECVRFVKK 229
+AP +++ G D++ G LG +NLS A C ++ K
Sbjct: 278 FAPDVVLVSSGFDAVEGHPTPLGGYNLS----ARCFGYLTK 314
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 2/171 (1%)
Query: 78 HHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFH 137
HHA+ A GFCY+N+ + L HARV +D D+HHG G++E FY V+ VS H
Sbjct: 177 HHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIH 236
Query: 138 KFGDLFFPG-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAI 196
F+P G E G EG Y +N+P+ G + +F + + + +AP A+
Sbjct: 237 GDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALRE-LRRFAPDAL 295
Query: 197 VLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENV 247
VL G D D ++ DG + LP ++ GGY E++
Sbjct: 296 VLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESL 346
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Z|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C10|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
Length = 423
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 13/161 (8%)
Query: 78 HHAKKCEASGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRVMTVS 135
HHA A GFC+ N + + +L + +++L +D DVHHG+G ++ FY V+ +S
Sbjct: 189 HHADHSTAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYIS 248
Query: 136 FHKFGDL-FFPGTGDVKEIGEREGKFYAINVPLKDGID----DTSFTRLFKTIISKVVET 190
H+ D FFPG+G V E+G G+ + +NV G+D D + F+ ++ +
Sbjct: 249 LHRHDDGNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIARE 308
Query: 191 YAPGAIVLQCGADSLAG--DRLGCFNLSIDGHAECVRFVKK 229
++P +++ G D+ G LG +++S A+C ++ +
Sbjct: 309 FSPDLVLVSAGFDAAEGHPAPLGGYHVS----AKCFGYMTQ 345
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|B Chain B, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|C Chain C, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|D Chain D, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ1|A Chain A, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|B Chain B, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|C Chain C, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|D Chain D, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ3|A Chain A, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|B Chain B, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|C Chain C, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|D Chain D, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|2GH6|A Chain A, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|B Chain B, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|C Chain C, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|D Chain D, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
Length = 369
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 45 FEFCQIYAGGTIDAARRLNNQLCDIA---INWAGGLHHAKKCEASGFCYIND--LVLGIL 99
E ++ AGG ++ RR+ +N G HHA A GFC N+ + G
Sbjct: 108 LEIARLSAGGAVELTRRVATGELSAGYALVNPPG--HHAPHNAAMGFCIFNNTSVAAGYA 165
Query: 100 ELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGK 159
+ RV +D DVHHG+G ++ ++ V+T+S H+ F P +G E G G
Sbjct: 166 RAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQH-LCFPPDSGYSTERGAGNGH 224
Query: 160 FYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG 219
Y INVPL G + ++ ++ + Y P I++ G D+ D L ++ DG
Sbjct: 225 GYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADG 284
Query: 220 HAECVR 225
+ R
Sbjct: 285 FRQMAR 290
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|B Chain B, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|C Chain C, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|D Chain D, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
Length = 375
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 45 FEFCQIYAGGTIDAARRLNNQLCDIA---INWAGGLHHAKKCEASGFCYIND--LVLGIL 99
E ++ AGG ++ RR+ +N G HHA A GFC N+ + G
Sbjct: 114 LEIARLSAGGAVELTRRVATGELSAGYALVNPPG--HHAPHNAAMGFCIFNNTSVAAGYA 171
Query: 100 ELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGK 159
+ RV +D DVHHG+G ++ ++ V+T+S H+ F P +G E G G
Sbjct: 172 RAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQH-LCFPPDSGYSTERGAGNGH 230
Query: 160 FYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG 219
Y INVPL G + ++ ++ + Y P I++ G D+ D L ++ DG
Sbjct: 231 GYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADG 290
Query: 220 HAECVR 225
+ R
Sbjct: 291 FRQMAR 296
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|B Chain B, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|C Chain C, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|D Chain D, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|E Chain E, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|F Chain F, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|G Chain G, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|H Chain H, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|I Chain I, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|J Chain J, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|K Chain K, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|L Chain L, Crystal Structure Of Apah Complexed With M344
pdb|3Q9F|A Chain A, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|B Chain B, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|C Chain C, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|D Chain D, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|E Chain E, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|F Chain F, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|G Chain G, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|H Chain H, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|I Chain I, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|J Chain J, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|K Chain K, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|L Chain L, Crystal Structure Of Apah Complexed With Caps
Length = 341
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 3/167 (1%)
Query: 78 HHAKKCEASGFCYINDLVLGILELL-KYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSF 136
HHA G+C+IN+ + LL K ++ +D+D HHG+G ++ FY V S
Sbjct: 158 HHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASL 217
Query: 137 HKFGDLFFPG-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGA 195
H FP G +E G+ G N P+ G + + + ++ + A
Sbjct: 218 HGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIA-AFGAEA 276
Query: 196 IVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 242
IV+ G D+ D + F L+ + R + +PLLV GGY
Sbjct: 277 IVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGY 323
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|B Chain B, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|C Chain C, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|D Chain D, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|E Chain E, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|F Chain F, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|G Chain G, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|H Chain H, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|I Chain I, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|J Chain J, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|K Chain K, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|L Chain L, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9E|A Chain A, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|B Chain B, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|C Chain C, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|D Chain D, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|E Chain E, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|F Chain F, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|G Chain G, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|H Chain H, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|I Chain I, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|J Chain J, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|K Chain K, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|L Chain L, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
Length = 341
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 3/158 (1%)
Query: 87 GFCYINDLVLGILELL-KYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFP 145
G+C+IN+ + LL K ++ +D+D HHG+G ++ FY V S H FP
Sbjct: 167 GYCFINNAAVAAQRLLDKGAKKIAILDVDFHHGNGTQDIFYERGDVFFASLHGDPAEAFP 226
Query: 146 G-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADS 204
G +E G+ G N P+ G + + + ++ + AIV+ G D+
Sbjct: 227 HFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIA-AFGAEAIVVSLGVDT 285
Query: 205 LAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 242
D + F L+ + R + +PLLV GGY
Sbjct: 286 FEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGY 323
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 17/68 (25%)
Query: 213 FNLSIDGHAECVRFVKKFNLPL-------LVTGGGGYTKENVARCWTVETGILLDTELPN 265
+ L+IDG + F+ K N+P + G Y E V W LP
Sbjct: 281 YWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWN----------LPY 330
Query: 266 EIPENEYI 273
+IP NEY+
Sbjct: 331 DIPANEYL 338
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 3 SKDKISYFYDGD---------VGSVYFGPNHPMKPHRLYNLGEDCPVFENLFEFCQIYAG 53
S+ + Y YDG GS+ +KP+ + L E+ P F + F I G
Sbjct: 223 SRKVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTL-ENTPAFIHGGPFANIAHG 281
Query: 54 GTIDAARRLNNQLCDIAINWAG---GLHHAK----KCEASGFCYINDLVLGILELLKYHA 106
A + +L D + AG L K KC +GF +++ + LK H
Sbjct: 282 CNSIIATKTALKLADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHG 341
Query: 107 RVLYIDIDVHHGDGVEEAF 125
V D+ + + + E F
Sbjct: 342 GVPKSDLATENLEALREGF 360
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 21/147 (14%)
Query: 172 DDTSFTRLFKTIISKVVETYAPGA---IVLQCGADSLAGDRLGCFNLSIDGHAECVRFVK 228
D FTRL ++ +E YAP + + ++ G+ + LG +L + +
Sbjct: 6 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGAS 65
Query: 229 KFNLPLLVTGGGG-----YTKENVA---RCWTVETGILLDTEL-PNEIPENEYIKYFAPE 279
F + + GG T+EN+A C + IL++ L PE + A +
Sbjct: 66 SFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQ 125
Query: 280 CSLRI--------PNGH-IENLNSKSY 297
LRI P H IENL++ +Y
Sbjct: 126 PQLRIDKAVALQNPQAHVIENLHAAAY 152
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 21/147 (14%)
Query: 172 DDTSFTRLFKTIISKVVETYAPGA---IVLQCGADSLAGDRLGCFNLSIDGHAECVRFVK 228
D FTRL ++ +E YAP + + ++ G+ + LG +L + +
Sbjct: 36 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGAS 95
Query: 229 KFNLPLLVTGGGG-----YTKENVA---RCWTVETGILLDTEL-PNEIPENEYIKYFAPE 279
F + + GG T+EN+A C + IL++ L PE + A +
Sbjct: 96 SFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQ 155
Query: 280 CSLRI--------PNGH-IENLNSKSY 297
LRI P H IENL++ +Y
Sbjct: 156 PQLRIDKAVALQNPQAHVIENLHAAAY 182
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 21/147 (14%)
Query: 172 DDTSFTRLFKTIISKVVETYAPGA---IVLQCGADSLAGDRLGCFNLSIDGHAECVRFVK 228
D FTRL ++ +E YAP + + ++ G+ + LG +L + +
Sbjct: 22 QDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGAS 81
Query: 229 KFNLPLLVTGGGG-----YTKENVA---RCWTVETGILLDTEL-PNEIPENEYIKYFAPE 279
F + + GG T+EN+A C + IL++ L PE + A +
Sbjct: 82 SFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQ 141
Query: 280 CSLRI--------PNGH-IENLNSKSY 297
LRI P H IENL++ +Y
Sbjct: 142 PQLRIDKAVALQNPQAHVIENLHAAAY 168
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 222 ECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILL 259
CVRF + P++V+GG +N+ + W + TG L+
Sbjct: 156 SCVRFSPSLDAPVIVSGGW----DNLVKVWDLATGRLV 189
>pdb|3HO7|A Chain A, Crystal Structure Of Oxyr From Porphyromonas Gingivalis
pdb|3HO7|B Chain B, Crystal Structure Of Oxyr From Porphyromonas Gingivalis
Length = 232
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 9/44 (20%)
Query: 28 PHRLYNLGEDCPVFENLFEFCQI---------YAGGTIDAARRL 62
PHRL+ L E + L FCQ+ Y+GG+++A RL
Sbjct: 108 PHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRL 151
>pdb|3FY3|A Chain A, Crystal Structure Of Truncated Hemolysin A From P.
Mirabilis
Length = 236
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 22 PNHPMKPHRLY---NLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAIN 72
PN+ H Y N+G+ VF N E Q G ++A LN Q + +N
Sbjct: 29 PNNEGISHNQYQDFNVGKPGAVFNNALEAGQSQLAGHLNANSNLNGQAASLILN 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,837,677
Number of Sequences: 62578
Number of extensions: 587315
Number of successful extensions: 1171
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1107
Number of HSP's gapped (non-prelim): 45
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)