Query 017484
Match_columns 371
No_of_seqs 295 out of 1647
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1342 Histone deacetylase co 100.0 6E-130 1E-134 953.6 30.6 364 2-365 4-425 (425)
2 PTZ00063 histone deacetylase; 100.0 6E-107 1E-111 820.2 35.5 329 3-332 2-392 (436)
3 PTZ00346 histone deacetylase; 100.0 2.8E-90 6.1E-95 695.7 33.8 317 3-319 18-404 (429)
4 COG0123 AcuC Deacetylases, inc 100.0 3.6E-74 7.7E-79 568.7 27.2 275 5-280 2-335 (340)
5 PF00850 Hist_deacetyl: Histon 100.0 8.9E-71 1.9E-75 539.1 21.8 224 35-259 79-311 (311)
6 KOG1343 Histone deacetylase co 100.0 1.1E-43 2.4E-48 379.5 20.4 255 43-313 532-795 (797)
7 KOG1344 Predicted histone deac 100.0 2.6E-32 5.6E-37 253.9 10.0 196 37-245 103-305 (324)
8 KOG1343 Histone deacetylase co 99.9 5.4E-28 1.2E-32 259.3 9.1 225 38-264 122-358 (797)
9 COG3914 Spy Predicted O-linked 86.0 16 0.00034 39.6 13.5 166 85-277 313-507 (620)
10 cd04501 SGNH_hydrolase_like_4 82.5 4.9 0.00011 35.4 7.0 68 162-237 34-102 (183)
11 cd01825 SGNH_hydrolase_peri1 S 77.5 6.6 0.00014 34.4 6.1 54 183-238 47-103 (189)
12 cd01822 Lysophospholipase_L1_l 75.4 10 0.00022 32.8 6.7 68 162-237 39-107 (177)
13 cd04237 AAK_NAGS-ABP AAK_NAGS- 75.1 7.7 0.00017 37.9 6.4 64 175-246 1-64 (280)
14 PF13472 Lipase_GDSL_2: GDSL-l 73.8 3.4 7.5E-05 34.9 3.2 71 162-238 33-108 (179)
15 cd04502 SGNH_hydrolase_like_7 73.6 10 0.00022 33.0 6.3 49 186-237 44-95 (171)
16 cd01828 sialate_O-acetylestera 73.5 11 0.00023 32.8 6.4 45 190-237 46-93 (169)
17 cd01835 SGNH_hydrolase_like_3 72.7 19 0.0004 32.0 7.8 73 163-237 41-117 (193)
18 cd01832 SGNH_hydrolase_like_1 71.0 15 0.00032 32.2 6.7 59 172-237 48-111 (185)
19 cd01841 NnaC_like NnaC (CMP-Ne 70.2 20 0.00043 31.2 7.3 68 162-237 26-96 (174)
20 KOG0121 Nuclear cap-binding pr 69.9 3 6.5E-05 36.9 1.9 45 78-122 70-121 (153)
21 TIGR02855 spore_yabG sporulati 68.6 15 0.00033 36.1 6.7 60 183-243 144-209 (283)
22 cd01833 XynB_like SGNH_hydrola 64.5 17 0.00037 31.0 5.6 42 186-230 34-76 (157)
23 PF02310 B12-binding: B12 bind 64.1 17 0.00038 29.8 5.4 48 185-243 44-91 (121)
24 TIGR01890 N-Ac-Glu-synth amino 63.6 14 0.0003 38.1 5.7 63 176-246 1-63 (429)
25 TIGR03018 pepcterm_TyrKin exop 63.4 1.2E+02 0.0026 27.7 11.3 25 178-202 134-158 (207)
26 PF05582 Peptidase_U57: YabG p 62.8 24 0.00052 35.0 6.8 61 182-243 144-210 (287)
27 PRK10528 multifunctional acyl- 62.4 24 0.00052 31.8 6.4 64 162-237 46-114 (191)
28 cd00840 MPP_Mre11_N Mre11 nucl 62.3 36 0.00078 30.6 7.6 59 173-239 23-84 (223)
29 cd01820 PAF_acetylesterase_lik 61.1 11 0.00025 34.4 4.1 47 188-237 85-134 (214)
30 PRK05279 N-acetylglutamate syn 60.4 29 0.00063 35.8 7.4 65 174-246 7-71 (441)
31 cd02068 radical_SAM_B12_BD B12 59.1 35 0.00076 28.6 6.5 51 181-243 28-78 (127)
32 cd01836 FeeA_FeeB_like SGNH_hy 57.9 29 0.00062 30.6 6.1 67 162-237 43-112 (191)
33 COG1618 Predicted nucleotide k 54.3 39 0.00084 31.2 6.2 59 161-238 79-137 (179)
34 cd01972 Nitrogenase_VnfE_like 53.5 43 0.00093 34.5 7.3 72 178-259 75-148 (426)
35 cd01829 SGNH_hydrolase_peri2 S 53.1 43 0.00093 29.7 6.4 21 185-205 52-73 (200)
36 TIGR00259 thylakoid_BtpA membr 52.8 1.1E+02 0.0024 29.9 9.5 61 186-260 165-227 (257)
37 cd01821 Rhamnogalacturan_acety 52.3 39 0.00084 30.2 6.0 44 192-237 65-113 (198)
38 cd01443 Cdc25_Acr2p Cdc25 enzy 51.9 76 0.0017 25.9 7.3 66 162-243 42-109 (113)
39 cd01830 XynE_like SGNH_hydrola 51.1 39 0.00084 30.5 5.8 50 187-236 69-124 (204)
40 cd03466 Nitrogenase_NifN_2 Nit 50.4 85 0.0018 32.4 8.9 71 179-260 71-146 (429)
41 cd01967 Nitrogenase_MoFe_alpha 49.6 53 0.0011 33.2 7.1 67 178-254 73-141 (406)
42 cd01981 Pchlide_reductase_B Pc 49.6 1.1E+02 0.0025 31.3 9.7 57 179-245 72-130 (430)
43 TIGR01285 nifN nitrogenase mol 48.8 64 0.0014 33.5 7.7 69 179-258 78-152 (432)
44 KOG2749 mRNA cleavage and poly 48.4 1.1E+02 0.0023 31.7 8.9 119 97-240 123-248 (415)
45 cd01838 Isoamyl_acetate_hydrol 47.9 42 0.00091 29.3 5.4 51 185-237 53-113 (199)
46 cd01844 SGNH_hydrolase_like_6 47.6 45 0.00098 29.3 5.6 48 185-237 50-99 (177)
47 PF04321 RmlD_sub_bind: RmlD s 47.4 7.8 0.00017 37.5 0.7 54 184-237 43-99 (286)
48 PLN02825 amino-acid N-acetyltr 46.6 48 0.001 35.5 6.4 64 176-247 1-64 (515)
49 PRK14476 nitrogenase molybdenu 46.5 62 0.0014 33.8 7.2 70 179-259 79-154 (455)
50 TIGR01278 DPOR_BchB light-inde 46.4 44 0.00095 35.5 6.1 58 178-245 71-129 (511)
51 cd01971 Nitrogenase_VnfN_like 46.1 47 0.001 34.3 6.2 58 179-246 73-131 (427)
52 COG0420 SbcD DNA repair exonuc 45.5 80 0.0017 31.8 7.7 63 172-243 21-86 (390)
53 CHL00202 argB acetylglutamate 44.7 78 0.0017 30.9 7.2 64 175-245 6-69 (284)
54 cd06167 LabA_like LabA_like pr 44.4 92 0.002 26.5 6.9 45 188-247 95-139 (149)
55 KOG3147 6-phosphogluconolacton 43.0 66 0.0014 31.3 6.2 84 120-208 70-158 (252)
56 CHL00076 chlB photochlorophyll 43.0 71 0.0015 34.0 7.1 60 178-247 71-132 (513)
57 TIGR01969 minD_arch cell divis 42.8 27 0.00059 32.2 3.5 19 101-119 25-43 (251)
58 cd01965 Nitrogenase_MoFe_beta_ 42.7 88 0.0019 32.2 7.6 56 179-244 68-129 (428)
59 cd07388 MPP_Tt1561 Thermus the 41.3 1E+02 0.0022 29.2 7.2 55 179-243 19-73 (224)
60 cd00229 SGNH_hydrolase SGNH_hy 40.7 91 0.002 25.6 6.2 55 185-240 58-115 (187)
61 PRK04531 acetylglutamate kinas 40.6 49 0.0011 34.2 5.3 53 186-246 25-81 (398)
62 CHL00073 chlN photochlorophyll 40.5 46 0.001 35.1 5.1 54 180-243 85-140 (457)
63 TIGR01283 nifE nitrogenase mol 39.9 93 0.002 32.4 7.3 56 179-244 108-165 (456)
64 PF09383 NIL: NIL domain; Int 39.7 17 0.00038 28.0 1.4 52 181-232 16-71 (76)
65 PRK13236 nitrogenase reductase 39.3 34 0.00074 33.4 3.7 23 103-126 32-54 (296)
66 PLN02512 acetylglutamate kinas 38.9 1E+02 0.0022 30.6 7.0 66 173-245 28-93 (309)
67 TIGR02931 anfK_nitrog Fe-only 38.7 1.2E+02 0.0025 31.9 7.8 69 180-259 80-159 (461)
68 PF14639 YqgF: Holliday-juncti 38.7 44 0.00095 29.8 4.0 27 172-198 43-69 (150)
69 PF00148 Oxidored_nitro: Nitro 38.4 53 0.0012 33.0 5.1 55 179-243 61-117 (398)
70 TIGR01007 eps_fam capsular exo 37.3 3.1E+02 0.0067 24.6 11.3 16 103-118 44-59 (204)
71 PF02585 PIG-L: GlcNAc-PI de-N 37.0 79 0.0017 26.3 5.2 28 177-204 85-112 (128)
72 TIGR00583 mre11 DNA repair pro 36.1 1.4E+02 0.003 31.0 7.8 49 173-229 24-72 (405)
73 PRK11148 cyclic 3',5'-adenosin 35.9 1.4E+02 0.0031 28.5 7.4 54 177-239 39-93 (275)
74 cd01979 Pchlide_reductase_N Pc 35.9 90 0.002 31.8 6.3 55 179-243 74-130 (396)
75 cd01966 Nitrogenase_NifN_1 Nit 35.7 1.5E+02 0.0031 30.7 7.9 69 180-259 69-143 (417)
76 cd00316 Oxidoreductase_nitroge 35.2 1.2E+02 0.0026 30.3 7.1 66 180-256 68-135 (399)
77 TIGR01279 DPOR_bchN light-inde 35.1 85 0.0018 32.2 6.0 31 179-209 71-102 (407)
78 cd07402 MPP_GpdQ Enterobacter 34.8 1.5E+02 0.0032 27.2 7.1 61 173-243 20-81 (240)
79 COG1091 RfbD dTDP-4-dehydrorha 34.4 60 0.0013 32.1 4.5 64 184-247 42-117 (281)
80 cd01974 Nitrogenase_MoFe_beta 34.3 1.1E+02 0.0024 31.6 6.8 66 179-255 72-143 (435)
81 PF06866 DUF1256: Protein of u 34.1 1.4E+02 0.003 27.4 6.4 41 173-213 5-45 (163)
82 cd05781 DNA_polB_B3_exo DEDDy 33.7 1.8E+02 0.0038 26.6 7.3 88 107-234 4-91 (188)
83 TIGR03282 methan_mark_13 putat 33.5 1.6E+02 0.0034 30.2 7.4 53 179-242 62-116 (352)
84 cd01973 Nitrogenase_VFe_beta_l 33.4 2E+02 0.0043 30.2 8.5 69 180-259 74-152 (454)
85 COG1891 Uncharacterized protei 33.2 49 0.0011 31.0 3.5 64 143-208 64-129 (235)
86 CHL00175 minD septum-site dete 32.0 50 0.0011 31.5 3.5 19 103-121 42-60 (281)
87 cd02067 B12-binding B12 bindin 31.2 90 0.002 25.7 4.6 46 186-242 44-91 (119)
88 cd06558 crotonase-like Crotona 30.2 2.3E+02 0.0049 25.1 7.4 68 173-240 24-102 (195)
89 PF03437 BtpA: BtpA family; I 29.6 1.6E+02 0.0036 28.6 6.6 68 181-262 161-229 (254)
90 cd01968 Nitrogenase_NifE_I Nit 29.6 1.8E+02 0.004 29.6 7.4 56 179-244 73-130 (410)
91 PRK02842 light-independent pro 29.2 1.6E+02 0.0034 30.5 6.8 31 179-209 83-115 (427)
92 COG3172 NadR Predicted ATPase/ 28.7 1.4E+02 0.003 27.7 5.5 63 183-245 105-170 (187)
93 cd03110 Fer4_NifH_child This p 28.5 44 0.00096 29.4 2.4 14 106-119 25-38 (179)
94 PF10649 DUF2478: Protein of u 28.3 3.3E+02 0.0072 24.7 7.9 71 173-258 75-145 (159)
95 cd03111 CpaE_like This protein 28.2 69 0.0015 26.2 3.3 15 105-119 29-43 (106)
96 TIGR02026 BchE magnesium-proto 28.2 1.4E+02 0.0031 31.4 6.4 45 186-242 57-101 (497)
97 TIGR02370 pyl_corrinoid methyl 28.1 1.7E+02 0.0037 26.9 6.3 44 186-240 129-174 (197)
98 PF03266 NTPase_1: NTPase; In 28.0 19 0.0004 32.5 -0.1 42 191-241 94-135 (168)
99 PRK14478 nitrogenase molybdenu 27.7 1.8E+02 0.0038 30.6 7.0 56 179-244 106-163 (475)
100 PF02310 B12-binding: B12 bind 27.6 1.8E+02 0.0039 23.6 5.8 99 96-245 19-118 (121)
101 PF13277 YmdB: YmdB-like prote 27.3 2.2E+02 0.0048 27.8 7.0 120 177-306 12-136 (253)
102 PRK10818 cell division inhibit 27.2 70 0.0015 30.2 3.6 17 103-119 29-45 (270)
103 PF10609 ParA: ParA/MinD ATPas 27.2 1.9E+02 0.0042 23.3 5.6 55 165-239 6-61 (81)
104 cd02036 MinD Bacterial cell di 27.1 58 0.0013 28.1 2.9 20 100-119 23-42 (179)
105 COG0455 flhG Antiactivator of 27.1 1.6E+02 0.0035 28.6 6.1 95 100-206 27-126 (262)
106 PRK07854 enoyl-CoA hydratase; 26.9 2.9E+02 0.0063 26.0 7.8 65 171-239 23-94 (243)
107 PLN02974 adenosylmethionine-8- 26.8 3.3E+02 0.0071 31.0 9.3 64 163-248 196-259 (817)
108 COG0683 LivK ABC-type branched 26.7 3.1E+02 0.0067 27.3 8.3 101 96-243 137-239 (366)
109 cd02651 nuc_hydro_IU_UC_XIUA n 26.5 62 0.0014 31.7 3.2 52 184-247 105-156 (302)
110 cd01839 SGNH_arylesterase_like 26.3 1.6E+02 0.0036 26.3 5.8 36 190-230 77-117 (208)
111 COG1341 Predicted GTPase or GT 26.2 4.7E+02 0.01 27.3 9.5 85 97-200 93-179 (398)
112 PF06925 MGDG_synth: Monogalac 25.8 76 0.0016 28.0 3.4 25 174-198 71-95 (169)
113 KOG1610 Corticosteroid 11-beta 25.8 2.6E+02 0.0057 28.3 7.4 78 183-260 148-230 (322)
114 TIGR00619 sbcd exonuclease Sbc 25.6 3E+02 0.0065 26.2 7.7 57 175-239 23-83 (253)
115 cd02072 Glm_B12_BD B12 binding 25.3 2.5E+02 0.0055 24.5 6.4 45 188-243 46-91 (128)
116 COG2047 Uncharacterized protei 25.2 96 0.0021 30.0 4.0 45 192-243 83-127 (258)
117 TIGR02482 PFKA_ATP 6-phosphofr 25.2 3.4E+02 0.0074 27.0 8.1 98 172-271 10-133 (301)
118 TIGR02015 BchY chlorophyllide 24.8 2.8E+02 0.006 28.8 7.7 63 177-252 72-136 (422)
119 cd01976 Nitrogenase_MoFe_alpha 24.8 1.8E+02 0.0039 30.0 6.4 56 179-244 85-143 (421)
120 TIGR01968 minD_bact septum sit 24.7 83 0.0018 29.1 3.6 19 101-119 26-44 (261)
121 PF00581 Rhodanese: Rhodanese- 24.6 1.4E+02 0.0031 23.3 4.5 18 226-243 91-108 (113)
122 cd01826 acyloxyacyl_hydrolase_ 24.5 5.4E+02 0.012 25.9 9.3 117 190-316 120-250 (305)
123 PF09936 Methyltrn_RNA_4: SAM- 24.5 3.8E+02 0.0081 25.1 7.6 56 180-244 90-145 (185)
124 PRK08138 enoyl-CoA hydratase; 24.1 2.5E+02 0.0053 26.8 6.8 18 222-239 89-106 (261)
125 cd00363 PFK Phosphofructokinas 24.0 4.4E+02 0.0095 26.5 8.8 81 172-253 11-114 (338)
126 PRK09674 enoyl-CoA hydratase-i 23.7 3.1E+02 0.0066 26.0 7.3 66 172-240 26-101 (255)
127 PRK07511 enoyl-CoA hydratase; 23.7 2.5E+02 0.0055 26.6 6.8 20 221-240 88-107 (260)
128 cd02065 B12-binding_like B12 b 23.7 2.4E+02 0.0053 22.8 5.9 14 188-201 46-59 (125)
129 PLN02725 GDP-4-keto-6-deoxyman 23.7 1.4E+02 0.003 28.1 5.0 54 184-237 41-99 (306)
130 COG1654 BirA Biotin operon rep 23.6 61 0.0013 26.0 2.1 52 200-251 15-67 (79)
131 PRK13233 nifH nitrogenase redu 23.6 76 0.0016 30.2 3.1 16 104-119 30-45 (275)
132 PRK13234 nifH nitrogenase redu 23.4 78 0.0017 30.9 3.2 19 101-119 28-46 (295)
133 PRK00942 acetylglutamate kinas 23.2 3.1E+02 0.0068 26.4 7.4 62 175-243 6-67 (283)
134 PRK13232 nifH nitrogenase redu 23.1 83 0.0018 29.9 3.3 17 103-119 27-43 (273)
135 cd04506 SGNH_hydrolase_YpmR_li 23.0 1.1E+02 0.0023 27.3 3.8 48 190-237 66-127 (204)
136 cd01827 sialate_O-acetylestera 22.2 1.8E+02 0.0038 25.4 5.1 40 190-230 65-105 (188)
137 TIGR01282 nifD nitrogenase mol 21.9 2.1E+02 0.0046 30.0 6.3 56 179-244 118-176 (466)
138 TIGR03878 thermo_KaiC_2 KaiC d 21.9 1.9E+02 0.0042 27.6 5.6 48 183-239 122-174 (259)
139 PF01729 QRPTase_C: Quinolinat 21.9 62 0.0013 29.4 2.1 46 200-250 99-144 (169)
140 COG4671 Predicted glycosyl tra 21.9 1.3E+02 0.0028 31.1 4.4 31 170-200 84-114 (400)
141 cd01139 TroA_f Periplasmic bin 21.7 3E+02 0.0066 26.8 7.1 60 189-261 88-147 (342)
142 KOG2733 Uncharacterized membra 21.6 2.5E+02 0.0054 29.2 6.4 44 171-216 116-159 (423)
143 COG0434 SgcQ Predicted TIM-bar 21.5 5.6E+02 0.012 25.1 8.4 70 180-263 165-235 (263)
144 TIGR02016 BchX chlorophyllide 21.4 97 0.0021 30.4 3.5 18 101-118 24-41 (296)
145 PRK10966 exonuclease subunit S 21.4 3.5E+02 0.0077 27.9 7.7 61 175-244 23-86 (407)
146 cd01834 SGNH_hydrolase_like_2 21.2 1.1E+02 0.0024 26.4 3.5 47 188-237 57-110 (191)
147 cd07384 MPP_Cdc1_like Saccharo 21.0 4.4E+02 0.0095 23.5 7.4 16 183-198 36-51 (171)
148 PRK07658 enoyl-CoA hydratase; 20.7 3.9E+02 0.0084 25.2 7.4 69 171-240 24-103 (257)
149 PRK06495 enoyl-CoA hydratase; 20.6 2.8E+02 0.0062 26.3 6.4 28 172-199 27-54 (257)
150 cd07383 MPP_Dcr2 Saccharomyces 20.6 3.5E+02 0.0076 24.2 6.8 52 184-239 33-84 (199)
151 PRK06190 enoyl-CoA hydratase; 20.5 4E+02 0.0087 25.5 7.4 20 221-240 84-103 (258)
152 PRK07428 nicotinate-nucleotide 20.4 1.1E+02 0.0023 30.4 3.4 47 200-251 215-261 (288)
153 COG3033 TnaA Tryptophanase [Am 20.3 5.3E+02 0.011 27.0 8.4 118 115-249 100-250 (471)
154 cd02071 MM_CoA_mut_B12_BD meth 20.2 4.2E+02 0.0091 22.1 6.8 36 186-232 44-79 (122)
155 PRK09987 dTDP-4-dehydrorhamnos 20.0 1.7E+02 0.0037 28.1 4.9 52 186-237 48-102 (299)
No 1
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.8e-130 Score=953.56 Aligned_cols=364 Identities=67% Similarity=1.214 Sum_probs=352.0
Q ss_pred CCCCeEEEEEcCCcccccCCCCCCCCchhh--------------------------------------------------
Q 017484 2 RSKDKISYFYDGDVGSVYFGPNHPMKPHRL-------------------------------------------------- 31 (371)
Q Consensus 2 ~~~~~v~y~~~~~~~~~~~g~~hP~~p~R~-------------------------------------------------- 31 (371)
.+|+||+|+|++++++|+||++|||||+|+
T Consensus 4 ~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~ 83 (425)
T KOG1342|consen 4 LIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENME 83 (425)
T ss_pred cCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccccc
Confidence 468999999999999999999999999998
Q ss_pred --------cccCCCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHH
Q 017484 32 --------YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLK 103 (371)
Q Consensus 32 --------~~~~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~ 103 (371)
||+++|||+|++||+||++++||||.||++|+++++||||||+||+|||||++||||||+|||||||++|||
T Consensus 84 ~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK 163 (425)
T KOG1342|consen 84 TFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLK 163 (425)
T ss_pred ccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHH
Q 017484 104 YHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTI 183 (371)
Q Consensus 104 ~~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~v 183 (371)
.++||||||||+|||||||+|||.++||||||||+|++.||||||+++|+|.++||+|+|||||.+|++|++|..+|++|
T Consensus 164 ~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pI 243 (425)
T KOG1342|consen 164 YHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPI 243 (425)
T ss_pred hCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCCCC
Q 017484 184 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTEL 263 (371)
Q Consensus 184 i~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~ 263 (371)
|.++++.|+|++||+|||+|++.+||||+||||++||++|+++++++++|+++|||||||++||||||+|+|++++|+++
T Consensus 244 i~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~ 323 (425)
T KOG1342|consen 244 ISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQEL 323 (425)
T ss_pred HHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCCccccCCccccc
Q 017484 264 PNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERM 343 (371)
Q Consensus 264 ~~~iP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l~~l~~apsvq~~~~p~~~~~~~~~~~~~~~~~~~ 343 (371)
+++||+|+||+||+|||+|++.+++++|+|+++||++|++++.+|||++++|||||||.+|+.-......+++++++.|.
T Consensus 324 ~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~~~~d~~~~~~~~~~d~~~ 403 (425)
T KOG1342|consen 324 PNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPNPDFDEDMVEDEKDPDLRS 403 (425)
T ss_pred cccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCCCccchhhhhhhhCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998333333336677888898
Q ss_pred ccccccccCCCCCCCCCCCCCC
Q 017484 344 DQHTQDKQIQRDDEFYEGDNDN 365 (371)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~ 365 (371)
.+...|++++.++||+|+++++
T Consensus 404 ~~~~~~~~~~~~~e~~d~~~~~ 425 (425)
T KOG1342|consen 404 SQESEDKDVQDDNEFYDGENEG 425 (425)
T ss_pred chhhhhcccccchhhcccccCC
Confidence 9999999999999999998763
No 2
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=6.1e-107 Score=820.19 Aligned_cols=329 Identities=65% Similarity=1.195 Sum_probs=319.1
Q ss_pred CCCeEEEEEcCCcccccCCCCCCCCchhh---------------------------------------------------
Q 017484 3 SKDKISYFYDGDVGSVYFGPNHPMKPHRL--------------------------------------------------- 31 (371)
Q Consensus 3 ~~~~v~y~~~~~~~~~~~g~~hP~~p~R~--------------------------------------------------- 31 (371)
+|+||+||||+++++|+||++|||+|.|+
T Consensus 2 ~~~~v~~~yd~~~~~h~~g~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~ 81 (436)
T PTZ00063 2 MRKRVSYFYDPDIGSYYYGPGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYRD 81 (436)
T ss_pred CCceEEEEECccccCcCCcCcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhccc
Confidence 57889999999999999999999999998
Q ss_pred -------cccC--CCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHH
Q 017484 32 -------YNLG--EDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELL 102 (371)
Q Consensus 32 -------~~~~--~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll 102 (371)
|+++ .|||+|+++|++|++++||+|.||+++++|++++||||+||+|||++++|+||||||||||||++|+
T Consensus 82 ~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L~ 161 (436)
T PTZ00063 82 FTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILELL 161 (436)
T ss_pred chhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHHH
Confidence 2455 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHH
Q 017484 103 KYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 182 (371)
Q Consensus 103 ~~~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~ 182 (371)
+.++||||||||||||||||+||+++++|||+|||++++ ||||||..+++|.+.|++|++||||++|++|++|+.+|++
T Consensus 162 ~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~-ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~~ 240 (436)
T PTZ00063 162 KYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGD-FFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFKP 240 (436)
T ss_pred HhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCC-cCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999985 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCC-
Q 017484 183 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT- 261 (371)
Q Consensus 183 vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~- 261 (371)
+|.|++++|+||+||+|||+|+|.+||||+|+||++||++|+++++++++|+++||||||+++++||||+++|++++|+
T Consensus 241 ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~~~~~~~ 320 (436)
T PTZ00063 241 VISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETGVILNKH 320 (436)
T ss_pred HHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCCCCCCCchhhhhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCCCCCcccccCCCCCCCCCC
Q 017484 262 -ELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEF 332 (371)
Q Consensus 262 -~~~~~iP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l~~l~~apsvq~~~~p~~~~~~~~ 332 (371)
+++++||+|+||+||+|+|+|++++++|+|+|+++||++|+++|++||+.+++||||||+++||++...+.
T Consensus 321 ~~~~~~iP~~~~~~~~~~~~~l~~~~~~~~n~n~~~~l~~~~~~~~~~l~~~~~ap~v~~~~~~~~~~~~~~ 392 (436)
T PTZ00063 321 DEMSDQISLNDYYDYYAPDFQLHLQPSNIPNYNSPEHLEKIKVKILENLRYLEHAPGVQFAYVPPDFFDRDI 392 (436)
T ss_pred ccCCccCCCCcchhhcCCCeEeecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCeeccccCCcccccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999876543
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=2.8e-90 Score=695.70 Aligned_cols=317 Identities=45% Similarity=0.801 Sum_probs=290.9
Q ss_pred CCCeEEEE----EcCCcccccCCCCCCCCchhh-----------------------------------------------
Q 017484 3 SKDKISYF----YDGDVGSVYFGPNHPMKPHRL----------------------------------------------- 31 (371)
Q Consensus 3 ~~~~v~y~----~~~~~~~~~~g~~hP~~p~R~----------------------------------------------- 31 (371)
++++|+|+ |-+++..|+||++|||+|.|+
T Consensus 18 ~~~~~~~~~~~~y~~~~~~~~~~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~~ 97 (429)
T PTZ00346 18 SRGRVALIDTSGYASDMNISAFVPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSCR 97 (429)
T ss_pred ccceeEEEecCccccccccccCCCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhccc
Confidence 56899999 888889999999999999998
Q ss_pred ----------cccCCCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHH
Q 017484 32 ----------YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILEL 101 (371)
Q Consensus 32 ----------~~~~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~l 101 (371)
+.++.|||+|+++|++|++++||+|.||+++++|+.++|+||+||+|||++++|+|||||||+||||++|
T Consensus 98 ~~~~~~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~~l 177 (429)
T PTZ00346 98 SWLWNAETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGILEL 177 (429)
T ss_pred ccccccccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHHHH
Confidence 1145799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHH
Q 017484 102 LKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFK 181 (371)
Q Consensus 102 l~~~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~ 181 (371)
+++++||||||||||||||||++||++++|||+|||+++..||||||..+++|.+.|++|++|||||+|++|++|+.+|+
T Consensus 178 l~~~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~f~ 257 (429)
T PTZ00346 178 LKCHDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGLFE 257 (429)
T ss_pred HHcCCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCC
Q 017484 182 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 261 (371)
Q Consensus 182 ~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~ 261 (371)
++|.|++++|+||+||+|||+|++.+||||.|+||.+||.+|+++++++++|++++|||||++.+++|||+++|++|+|+
T Consensus 258 ~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY~~~~lar~w~~~t~~l~g~ 337 (429)
T PTZ00346 258 HALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGYTIRNVAKLWAYETSILTGH 337 (429)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcCCccHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC--CCC--chhhhhhCCCCCCCCCCCCCCCCC-hHHHHHHHHH----HHHHHhhcCCCCCCcc
Q 017484 262 ELPNE--IPE--NEYIKYFAPECSLRIPNGHIENLN-SKSYLSTIKM----QVLENLRSIQHAPSVQ 319 (371)
Q Consensus 262 ~~~~~--iP~--~~~~~~~~p~~~l~~~~~~~~n~n-~~~~l~~i~~----~i~~~l~~l~~apsvq 319 (371)
++|.. ||. .+|.+||+|+|+|++.++.+.|.| +.+..++..+ +|.++|+.++..|-+|
T Consensus 338 ~i~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (429)
T PTZ00346 338 PLPPNTVLPVAEMPLSGWLFQDSPLLIVAQDRSNHVLPGLHCQRAYQMMTEQIDRHVPHIQPHPRLQ 404 (429)
T ss_pred CCCCCCCCCCCCCchhhhhcCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhhccCCcHHHH
Confidence 99866 784 579999999999999877777777 3455555544 5555555555334333
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.6e-74 Score=568.69 Aligned_cols=275 Identities=34% Similarity=0.525 Sum_probs=254.9
Q ss_pred CeEEEEEcCCcccccCCCCCCCCchhh--------------------------------------------------ccc
Q 017484 5 DKISYFYDGDVGSVYFGPNHPMKPHRL--------------------------------------------------YNL 34 (371)
Q Consensus 5 ~~v~y~~~~~~~~~~~g~~hP~~p~R~--------------------------------------------------~~~ 34 (371)
+++.++|++.+..|.++.+|||+|.|+ +++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~~~~~ 81 (340)
T COG0123 2 MKTALIYHPEFLEHEPPPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEGYGNL 81 (340)
T ss_pred CcceEeeCHHHhcCCCCCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccccccc
Confidence 468899999999999999999999998 367
Q ss_pred CCCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHh-CCcEEEEec
Q 017484 35 GEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKY-HARVLYIDI 113 (371)
Q Consensus 35 ~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~-~~RVliiD~ 113 (371)
+.|||+++++|+.|++++||++.|++.+.+|+..++++|.||+|||++++++|||+|||+||||++|+++ .+||+||||
T Consensus 82 d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~~~~RVaIiD~ 161 (340)
T COG0123 82 DGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKKGVKRVAIIDF 161 (340)
T ss_pred cCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHcCCCcEEEEEe
Confidence 8899999999999999999999999999999877889999999999999999999999999999999996 699999999
Q ss_pred cccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 017484 114 DVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAP 193 (371)
Q Consensus 114 DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~P 193 (371)
|+|||||||+|||++++|+|+|+|+++..+|||||..+++|.++ ++|++|||||+|++|++|+.+|+.++.|++++|+|
T Consensus 162 DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v~~~~~~f~P 240 (340)
T COG0123 162 DVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIVLPLLEEFKP 240 (340)
T ss_pred cCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999888999999999999999 99999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhc----CCCeEEEccCCCCchhhHHHHHHHHhhhhCCC---CCCC
Q 017484 194 GAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF----NLPLLVTGGGGYTKENVARCWTVETGILLDTE---LPNE 266 (371)
Q Consensus 194 d~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~----~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~---~~~~ 266 (371)
|+||+|||+|+|.+||||+|+||.++|.+++++++++ ++|++++|||||+..+++++|++++..|.|.. ....
T Consensus 241 dlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~~~~~~~~ 320 (340)
T COG0123 241 DLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGLVEEELEEP 320 (340)
T ss_pred CEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCCCccccccc
Confidence 9999999999999999999999999999999998876 56999999999999999999999999999954 3344
Q ss_pred CCCc-hhhhhhCCCC
Q 017484 267 IPEN-EYIKYFAPEC 280 (371)
Q Consensus 267 iP~~-~~~~~~~p~~ 280 (371)
+|.. +++..+.+++
T Consensus 321 ~~~~~~~~~~~~~~~ 335 (340)
T COG0123 321 LPEDLELRRAFRADY 335 (340)
T ss_pred cccchhhhhhhccch
Confidence 5543 3555555554
No 5
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=8.9e-71 Score=539.14 Aligned_cols=224 Identities=37% Similarity=0.625 Sum_probs=193.7
Q ss_pred CCCCCCChhHHHHHHHHHhHHHHHHHHHHccc--cceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHh--CCcEEE
Q 017484 35 GEDCPVFENLFEFCQIYAGGTIDAARRLNNQL--CDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKY--HARVLY 110 (371)
Q Consensus 35 ~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~--~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~--~~RVli 110 (371)
+.|||+++++++++++++||++.|++.+.+|+ ..+|++.+| +|||++++++|||+||||||||++|+++ .+||+|
T Consensus 79 ~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rpp-gHHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~~rV~i 157 (311)
T PF00850_consen 79 DGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPP-GHHAERDRAMGFCYFNNVAIAAKYLRKKYGLKRVAI 157 (311)
T ss_dssp SSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTTTTSSEEE
T ss_pred CCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCcc-ccccCcCcCcceeeeccHHHHHHHHhhccccceEEE
Confidence 46999999999999999999999999999994 557777444 5999999999999999999999999985 389999
Q ss_pred EeccccCccccccccccCCcEEEEeccccCCCCCC-CCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHHHHHHH
Q 017484 111 IDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFP-GTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVE 189 (371)
Q Consensus 111 iD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffP-gtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi~~~~~ 189 (371)
||||+|||||||++||+|++|||+|||+++..||| |||..+++|.++|+++++|||||+|++|++|+.+|+++|.|+++
T Consensus 158 iD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~~l~~~~~ 237 (311)
T PF00850_consen 158 IDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEEILLPALE 237 (311)
T ss_dssp EE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhhccccchh
Confidence 99999999999999999999999999999888999 99999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCC----CeEEEccCCCCchhhHHHHHHHHhhhh
Q 017484 190 TYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL----PLLVTGGGGYTKENVARCWTVETGILL 259 (371)
Q Consensus 190 ~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~----pvl~l~gGGY~~~~~ar~~~~~t~~ll 259 (371)
+|+||+||+|||+|++.+||+|.++||+++|.+++++|+++.. |++++|||||+++++++||+.++++|.
T Consensus 238 ~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 238 EFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp HHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred cccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998744 999999999999999999999999873
No 6
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-43 Score=379.54 Aligned_cols=255 Identities=25% Similarity=0.438 Sum_probs=219.5
Q ss_pred hHHHHHHHHHhHHHHHHHHH--Hcccc--ceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHhC--CcEEEEecccc
Q 017484 43 NLFEFCQIYAGGTIDAARRL--NNQLC--DIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH--ARVLYIDIDVH 116 (371)
Q Consensus 43 ~l~~~~~~~aGgsl~aa~~l--~~g~~--~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~~--~RVliiD~DvH 116 (371)
..|.....++|+...|+..+ +.++. .+|+.+++| |||....++|||+||++|+|+++|.... .||||||||||
T Consensus 532 dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvh 610 (797)
T KOG1343|consen 532 DTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVH 610 (797)
T ss_pred cHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeeccc
Confidence 34555555666655555544 12221 278888888 9999999999999999999999998765 89999999999
Q ss_pred CccccccccccCCcEEEEecccc-CCCCCCCCCCCCcccCCCCcceEEeecCCCCCC-hHHHHHHHHHHHHHHHHhcCCC
Q 017484 117 HGDGVEEAFYFTDRVMTVSFHKF-GDLFFPGTGDVKEIGEREGKFYAINVPLKDGID-DTSFTRLFKTIISKVVETYAPG 194 (371)
Q Consensus 117 HGdGtq~~F~~d~~VltiSiH~~-~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~-D~~y~~~f~~vi~~~~~~f~Pd 194 (371)
||||||.+|+.+++|+++|+|++ +..|||++|..+++|.+.|.++++|||++.+.. |.+|+.+|+.++.|++++|.||
T Consensus 611 hgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~pd 690 (797)
T KOG1343|consen 611 HGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNPD 690 (797)
T ss_pred CCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCCC
Confidence 99999999999999999999999 455999999999999999999999999987665 5999999999999999999999
Q ss_pred EEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhc-CCCeEEEccCCCCchhhHHHHHHHHhhhhCCCCCCCCCCchhh
Q 017484 195 AIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF-NLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYI 273 (371)
Q Consensus 195 ~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~-~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~~~~iP~~~~~ 273 (371)
+|++++|||+..+||||+..+|.++|+.+++.++++ ++|+++.+||||+...+.++...++.+|+|.+.|. ++. .|
T Consensus 691 ~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~-~~~-~~- 767 (797)
T KOG1343|consen 691 LVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPP-LSE-AY- 767 (797)
T ss_pred eEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCC-ccc-cc-
Confidence 999999999999999999999999999999999987 79999999999999999999999999999988775 222 11
Q ss_pred hhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcCC
Q 017484 274 KYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQ 313 (371)
Q Consensus 274 ~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l~~l~ 313 (371)
....++.|...+|+++++.-.+.|+-++
T Consensus 768 ------------~~~~~~~~a~~~l~~~~~~~~~~w~~~~ 795 (797)
T KOG1343|consen 768 ------------LPQKPNSNAVATLEKVIEVQSKYWSCLQ 795 (797)
T ss_pred ------------cCCCcchHHHHHHHHHHHhhhccccccc
Confidence 1255677889999999887777765443
No 7
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=99.97 E-value=2.6e-32 Score=253.89 Aligned_cols=196 Identities=31% Similarity=0.578 Sum_probs=165.4
Q ss_pred CCCCChhHHHHHHHHHhHHHHHHHH-HHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHh--CCcEEEEec
Q 017484 37 DCPVFENLFEFCQIYAGGTIDAARR-LNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKY--HARVLYIDI 113 (371)
Q Consensus 37 D~p~f~~l~~~~~~~aGgsl~aa~~-l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~--~~RVliiD~ 113 (371)
.|-+-..+..-.++.+||++.|++. +..| +|||..||+|||..+++.|||.+.||.+||..|-.+ ..|++|||+
T Consensus 103 n~~iqrk~LrPlR~QagGtilA~kLAle~G---WAINvGGGFHHcss~rGGGFC~yADItl~I~~lFer~~isr~mivDL 179 (324)
T KOG1344|consen 103 NCIIQRKLLRPLRLQAGGTILAAKLALERG---WAINVGGGFHHCSSSRGGGFCAYADITLAIFFLFERKAISRAMIVDL 179 (324)
T ss_pred hhhhhhhhccceeeccCceeehhhhhhhcC---eEEeecCccceeccCCCCceeehhhHHHHHHHHHhhhhhhheEEEec
Confidence 4444445555566789999999995 4444 999999999999999999999999999999888654 489999999
Q ss_pred cccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 017484 114 DVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAP 193 (371)
Q Consensus 114 DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~P 193 (371)
|+|+|||-|.-|.++ .|.++.+ |...+||+.-...+. -..-|.|..|+.|++|+.-+++.+...+.+|+|
T Consensus 180 DAHQGNghErdf~~~-~vyi~d~--ynr~iyp~D~~Ak~~-------Ir~kVEl~~gTeddeYLrkl~r~l~~sl~ef~P 249 (324)
T KOG1344|consen 180 DAHQGNGHERDFEDD-AVYIFDM--YNRFIYPRDHVAKES-------IRCKVELRNGTEDDEYLRKLKRCLMQSLAEFRP 249 (324)
T ss_pred ccccCCccccccccc-eeehhhh--hhhhccchhHHHHHH-------hhheeeeecCCCchHHHHHHHHHHHHHHHhhCC
Confidence 999999999999876 6666554 556689975544321 124578889999999999999999999999999
Q ss_pred CEEEEecCCCCCCCCcCcceecCHHHHHH----HHHHHHhcCCCeEEEccCCCCch
Q 017484 194 GAIVLQCGADSLAGDRLGCFNLSIDGHAE----CVRFVKKFNLPLLVTGGGGYTKE 245 (371)
Q Consensus 194 d~Ivvq~G~D~~~gDplg~~~Lt~~g~~~----~~~~l~~~~~pvl~l~gGGY~~~ 245 (371)
|+||+.+|.|.+.|||||.+.+|++|.-+ ++++.+..++|++++..|||-..
T Consensus 250 d~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~ 305 (324)
T KOG1344|consen 250 DMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKA 305 (324)
T ss_pred cEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehh
Confidence 99999999999999999999999999865 56777888999999999999864
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=99.95 E-value=5.4e-28 Score=259.30 Aligned_cols=225 Identities=23% Similarity=0.314 Sum_probs=192.5
Q ss_pred CCCChhHHHHHHHHHhHHHHHHHHHHcccc--ceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHhC--CcEEEEec
Q 017484 38 CPVFENLFEFCQIYAGGTIDAARRLNNQLC--DIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH--ARVLYIDI 113 (371)
Q Consensus 38 ~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~--~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~~--~RVliiD~ 113 (371)
+.+....+..+..++|+.+...+.+..+++ ..|..++.| |||.++...|||++||||++.++.+-.+ +||+++||
T Consensus 122 ~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~~~~~~~~~~rri~i~d~ 200 (797)
T KOG1343|consen 122 LYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERRSSPLLRRKKRRILIVDW 200 (797)
T ss_pred ceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHhhccccccccceeEeecc
Confidence 344445566777788888886666555543 245666666 9999999999999999999998766554 89999999
Q ss_pred cccCcccccccccc--CCcEEEEecccc-CCCCCCC--CCCCCcccCCCCcceEEeecCC-CCCChHHHHHHHHHHHHHH
Q 017484 114 DVHHGDGVEEAFYF--TDRVMTVSFHKF-GDLFFPG--TGDVKEIGEREGKFYAINVPLK-DGIDDTSFTRLFKTIISKV 187 (371)
Q Consensus 114 DvHHGdGtq~~F~~--d~~VltiSiH~~-~~~ffPg--tG~~~~~G~~~G~~~~vNvPL~-~G~~D~~y~~~f~~vi~~~ 187 (371)
|+|||+|||..|++ |++|+++|+|++ ...|||. +|..+.+|.++|-++++|+|+. .|++|.+|..+|..++.|.
T Consensus 201 dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~~~dy~~~~~~~~~~~ 280 (797)
T KOG1343|consen 201 DVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMTDADYEAAFLHVLLPH 280 (797)
T ss_pred cccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCcchhhhhhhhccCccc
Confidence 99999999999999 999999999998 3349998 4667889999999999999996 6889999999999999999
Q ss_pred HHhcCCCEEEEecCCCCCCCCc-CcceecCHHHHHHHHHHHHhcC-CCeEEEccCCCCchhhHHHHHHHHhhhhCCCCC
Q 017484 188 VETYAPGAIVLQCGADSLAGDR-LGCFNLSIDGHAECVRFVKKFN-LPLLVTGGGGYTKENVARCWTVETGILLDTELP 264 (371)
Q Consensus 188 ~~~f~Pd~Ivvq~G~D~~~gDp-lg~~~Lt~~g~~~~~~~l~~~~-~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~~ 264 (371)
..+|+|++++++||+|++.||+ +|.+..|+.+|+..+...+-.+ +++.++++|||+.+.++.. ......|+|.+.+
T Consensus 281 ~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~-~~~~~~llg~~~~ 358 (797)
T KOG1343|consen 281 ASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS-QLVLNKLLGKPIE 358 (797)
T ss_pred hhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHh-hhhHHhhcCCCcc
Confidence 9999999999999999999997 7999999999999988855555 8999999999999999887 6666778886654
No 9
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=85.95 E-value=16 Score=39.57 Aligned_cols=166 Identities=17% Similarity=0.229 Sum_probs=97.3
Q ss_pred CccchHHh--HHHHHHHHHHHhCCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceE
Q 017484 85 ASGFCYIN--DLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYA 162 (371)
Q Consensus 85 a~GFC~~N--diaiai~~ll~~~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~ 162 (371)
..++|-++ |-+=++...+...--|| ||+|.|-=|++..+|...|--+-||.- =||+|+.....- |-
T Consensus 313 ~~~~~~~~~~dd~e~a~~I~~d~IdIL-vDl~g~T~d~r~~v~A~RpAPiqvswl-----Gy~aT~g~p~~D------Y~ 380 (620)
T COG3914 313 VEKWYPIGRMDDAEIANAIRTDGIDIL-VDLDGHTVDTRCQVFAHRPAPIQVSWL-----GYPATTGSPNMD------YF 380 (620)
T ss_pred hhheeccCCcCHHHHHHHHHhcCCeEE-EeccCceeccchhhhhcCCCceEEeec-----ccccccCCCcce------EE
Confidence 44566666 22223333334333454 699999999999999998877777763 378876532211 21
Q ss_pred Eeec--CCCCCChHHHHHHHHHHHHHHHHhcCC--------------------CEEEEecCCCCCCCCcCcceecCHHHH
Q 017484 163 INVP--LKDGIDDTSFTRLFKTIISKVVETYAP--------------------GAIVLQCGADSLAGDRLGCFNLSIDGH 220 (371)
Q Consensus 163 vNvP--L~~G~~D~~y~~~f~~vi~~~~~~f~P--------------------d~Ivvq~G~D~~~gDplg~~~Lt~~g~ 220 (371)
|-=| +|+. -.+. +.+.|.++-..|+| +++|+.||- +.+..|++-+
T Consensus 381 I~D~y~vPp~-ae~y----ysEkl~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~~--------n~~K~~pev~ 447 (620)
T COG3914 381 ISDPYTVPPT-AEEY----YSEKLWRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCFN--------NYFKITPEVF 447 (620)
T ss_pred eeCceecCch-HHHH----HHHHHHhcccccCCCCCcccCCCCcchhhcCCCCCeEEEEecC--------CcccCCHHHH
Confidence 2212 2222 1223 33344343344543 678888873 5677888888
Q ss_pred HHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCCCC-----CCCCCCchhhhhhC
Q 017484 221 AECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTEL-----PNEIPENEYIKYFA 277 (371)
Q Consensus 221 ~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~-----~~~iP~~~~~~~~~ 277 (371)
....+.|+..-.-+++|.+||=+....++.= ..+.-.|... -..-|..+++++|+
T Consensus 448 ~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~--~la~~~Gv~~eRL~f~p~~~~~~h~a~~~ 507 (620)
T COG3914 448 ALWMQILSAVPNSVLLLKAGGDDAEINARLR--DLAEREGVDSERLRFLPPAPNEDHRARYG 507 (620)
T ss_pred HHHHHHHHhCCCcEEEEecCCCcHHHHHHHH--HHHHHcCCChhheeecCCCCCHHHHHhhc
Confidence 8888999988777999999996655444421 1122223221 11234447788876
No 10
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=82.46 E-value=4.9 Score=35.36 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=38.5
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEE
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 237 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l 237 (371)
.+|..+. |.+-.+++..++.. +...+||+|+++.|. |...+.++.. ..+.+.++++.+++.+.+++++
T Consensus 34 v~n~g~~-G~~~~~~l~~l~~~----~~~~~~d~v~i~~G~ND~~~~~~~~~---~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 34 VINRGIN-GDTTSQMLVRFYED----VIALKPAVVIIMGGTNDIIVNTSLEM---IKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred EEecCcC-CccHHHHHHHHHHH----HHhcCCCEEEEEeccCccccCCCHHH---HHHHHHHHHHHHHHCCCcEEEE
Confidence 4555443 33334555544433 345799999999998 5543332222 1344555666777766665554
No 11
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=77.47 E-value=6.6 Score=34.45 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=31.0
Q ss_pred HHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEEc
Q 017484 183 IISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVTG 238 (371)
Q Consensus 183 vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l~ 238 (371)
.+.+.+...+||+|+++.|. |+.... ....-..+.+..+++.+++. +.+++++.
T Consensus 47 ~~~~~l~~~~pd~Vii~~G~ND~~~~~--~~~~~~~~~~~~li~~i~~~~~~~~iv~~~ 103 (189)
T cd01825 47 FLQAQLAALPPDLVILSYGTNEAFNKQ--LNASEYRQQLREFIKRLRQILPNASILLVG 103 (189)
T ss_pred HHHHHHhhCCCCEEEEECCCcccccCC--CCHHHHHHHHHHHHHHHHHHCCCCeEEEEc
Confidence 44456778999999999997 433221 01111234445566666663 45566553
No 12
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=75.37 E-value=10 Score=32.82 Aligned_cols=68 Identities=13% Similarity=0.186 Sum_probs=37.3
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCC-CCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEE
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGAD-SLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 237 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D-~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l 237 (371)
.+|.-+.. .+-...+..++ ..+..++||+|+++.|.. ...+-+.. -..+.+.++++.+++.+.+++++
T Consensus 39 v~n~g~~G-~~~~~~~~~l~----~~~~~~~pd~v~i~~G~ND~~~~~~~~---~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 39 VINAGVSG-DTTAGGLARLP----ALLAQHKPDLVILELGGNDGLRGIPPD---QTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred EEecCcCC-cccHHHHHHHH----HHHHhcCCCEEEEeccCcccccCCCHH---HHHHHHHHHHHHHHHCCCeEEEE
Confidence 35555542 22233333343 445568999999999984 33221111 12233455677777767777665
No 13
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=75.10 E-value=7.7 Score=37.86 Aligned_cols=64 Identities=14% Similarity=0.310 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchh
Q 017484 175 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 246 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~ 246 (371)
+|.++|++.+ |-+.+|+-..+|+-.|-.++..+ ++ +.+..-+..+.+.+.+++++-|||.....
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~-----~l--~~~~~~ia~l~~~g~~~ViVHGggp~i~~ 64 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP-----NF--DNIVHDIALLHSLGIRLVLVHGARPQIDQ 64 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc-----hH--HHHHHHHHHHHHCCCcEEEEeCCCHHHHH
Confidence 3778888875 66899999999999998888754 22 23334444555668899999999987654
No 14
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=73.78 E-value=3.4 Score=34.87 Aligned_cols=71 Identities=17% Similarity=0.337 Sum_probs=37.2
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHH----HHHHHHHHHhcCCCeEE
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDG----HAECVRFVKKFNLPLLV 236 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g----~~~~~~~l~~~~~pvl~ 236 (371)
..|... .|.+-..+...+..-+.+ +...+||+||++.|. |...++ ....+.+. +.++++.++..+ ++++
T Consensus 33 ~~n~~~-~G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~~---~~~~~~~~~~~~l~~~i~~~~~~~-~vi~ 106 (179)
T PF13472_consen 33 VYNLGV-SGATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNGD---ENDTSPEQYEQNLRRIIEQLRPHG-PVIL 106 (179)
T ss_dssp EEEEE--TT-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTCT---TCHHHHHHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEEEee-cCccHhHHHHHHHHHHhh-hccCCCCEEEEEcccccccccc---cccccHHHHHHHHHHHHHhhcccC-cEEE
Confidence 455555 344444556556655545 588999999999997 555531 12223333 334444454444 6665
Q ss_pred Ec
Q 017484 237 TG 238 (371)
Q Consensus 237 l~ 238 (371)
+.
T Consensus 107 ~~ 108 (179)
T PF13472_consen 107 VS 108 (179)
T ss_dssp EE
T ss_pred ec
Confidence 53
No 15
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=73.62 E-value=10 Score=33.04 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=30.8
Q ss_pred HHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEE
Q 017484 186 KVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 237 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l 237 (371)
..+..++|++||++.|. |...+-+ ..-..+.+.++++.+++. +.+++++
T Consensus 44 ~~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 44 RLVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred hhhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 34456899999999999 6544322 222345566677777765 3455554
No 16
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=73.46 E-value=11 Score=32.78 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=27.0
Q ss_pred hcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHh--cCCCeEEE
Q 017484 190 TYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKK--FNLPLLVT 237 (371)
Q Consensus 190 ~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~--~~~pvl~l 237 (371)
.++||+||++.|. |...+- ...-..+.+.++++.+++ .+.+++++
T Consensus 46 ~~~pd~vvl~~G~ND~~~~~---~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQGT---SDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCCCCCC---CHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 6899999999997 543321 011222445556666666 35666654
No 17
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=72.74 E-value=19 Score=32.02 Aligned_cols=73 Identities=22% Similarity=0.260 Sum_probs=40.7
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHH-Hh--cCCCeEEE
Q 017484 163 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFV-KK--FNLPLLVT 237 (371)
Q Consensus 163 vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l-~~--~~~pvl~l 237 (371)
+|... .|.+-..++..++..+......++||+|+|..|. |....+. +....+.+.|.+.++.+ .. .+.+++++
T Consensus 41 ~N~gi-~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~-~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~ 117 (193)
T cd01835 41 YNLGV-RGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGR-KRPQLSARAFLFGLNQLLEEAKRLVPVLVV 117 (193)
T ss_pred EeecC-CCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccC-cccccCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 46554 3344556666666655444445899999999999 5544321 12235566666544333 22 24555544
No 18
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=71.02 E-value=15 Score=32.19 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHH----HHHHHHHhcCCCeEEE
Q 017484 172 DDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHA----ECVRFVKKFNLPLLVT 237 (371)
Q Consensus 172 ~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~----~~~~~l~~~~~pvl~l 237 (371)
+.......+...+..++ .++||+|||..|. |+.. -..+.+.|. .+++.++..+.+++++
T Consensus 48 ~G~~~~~~~~~~~~~~~-~~~~d~vii~~G~ND~~~------~~~~~~~~~~~~~~~i~~i~~~~~~vil~ 111 (185)
T cd01832 48 RGRRTAQILAEQLPAAL-ALRPDLVTLLAGGNDILR------PGTDPDTYRADLEEAVRRLRAAGARVVVF 111 (185)
T ss_pred CcchHHHHHHHHHHHHH-hcCCCEEEEecccccccc------CCCCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 33333333344444443 4699999999998 4433 124444444 4455555445555554
No 19
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=70.24 E-value=20 Score=31.17 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=38.4
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEE
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 237 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l 237 (371)
.+|..+... +-..++..+ .+.+...+|++|+|..|. |...+. ...-..+.+.++++.+++. +.+++++
T Consensus 26 v~n~g~~G~-t~~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~~---~~~~~~~~~~~l~~~~~~~~p~~~vi~~ 96 (174)
T cd01841 26 VNNLGIAGI-SSRQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKEV---SSNQFIKWYRDIIEQIREEFPNTKIYLL 96 (174)
T ss_pred EEecccccc-cHHHHHHHH----HHHHHhcCCCEEEEEeccccCCCCC---CHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 467666443 334444444 233456899999999999 554432 1122244556677777654 3445543
No 20
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=69.86 E-value=3 Score=36.90 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=31.0
Q ss_pred CCcccCCCccchHH----hHHH-HHHHHHHHhC--CcEEEEeccccCccccc
Q 017484 78 HHAKKCEASGFCYI----NDLV-LGILELLKYH--ARVLYIDIDVHHGDGVE 122 (371)
Q Consensus 78 HHA~~~~a~GFC~~----Ndia-iai~~ll~~~--~RVliiD~DvHHGdGtq 122 (371)
-.-.+-.++|||++ ++-| .|++++-... +|++-||||.-.=+|-|
T Consensus 70 Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQ 121 (153)
T KOG0121|consen 70 LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQ 121 (153)
T ss_pred cccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhh
Confidence 34456789999976 4444 4555664432 89999999987666655
No 21
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=68.65 E-value=15 Score=36.14 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=39.0
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCcCcceecC----HHHHHHHHHHHHhc--CCCeEEEccCCCC
Q 017484 183 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS----IDGHAECVRFVKKF--NLPLLVTGGGGYT 243 (371)
Q Consensus 183 vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt----~~g~~~~~~~l~~~--~~pvl~l~gGGY~ 243 (371)
.|.+++++++||++| -+|.|++..+.-....|. .+-|-++++.++.+ +.-=|++..|.=.
T Consensus 144 ~i~~Ll~~~~PDIlV-iTGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQ 209 (283)
T TIGR02855 144 KVLDLIEEVRPDILV-ITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQ 209 (283)
T ss_pred HHHHHHHHhCCCEEE-EeCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhH
Confidence 567889999999865 589999986543333332 34455677777776 3334666666433
No 22
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=64.51 E-value=17 Score=31.02 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=25.7
Q ss_pred HHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc
Q 017484 186 KVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF 230 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~ 230 (371)
..+...+|++|+++.|. |...+- ...-..+.+.++++.+++.
T Consensus 34 ~~~~~~~pd~vvi~~G~ND~~~~~---~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTNDLVLNR---DPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred hccccCCCCEEEEeccCcccccCC---CHHHHHHHHHHHHHHHHHh
Confidence 34556899999999999 443331 1112234555667777665
No 23
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=64.06 E-value=17 Score=29.79 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 185 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 185 ~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
...+.+++||+|.+++- +.-+.....++.+.+|+.+..+.++.||.+-
T Consensus 44 ~~~~~~~~pd~V~iS~~-----------~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 44 VEALRAERPDVVGISVS-----------MTPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp HHHHHHTTCSEEEEEES-----------SSTHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred HHHHhcCCCcEEEEEcc-----------CcCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 34567789999999774 2223344556777777765555555566654
No 24
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=63.56 E-value=14 Score=38.08 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchh
Q 017484 176 FTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 246 (371)
Q Consensus 176 y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~ 246 (371)
|...|++.+ |-+.+|+=..+||-.|-.++..+.+ ..+.+-+..++..+.+++++-|||..+..
T Consensus 1 ~~~~~~~~~-~~i~~~~~~~~ViK~GG~~~~~~~~-------~~~~~~i~~l~~~g~~~vlVHGgg~~i~~ 63 (429)
T TIGR01890 1 FVAWFREAA-PYINAHRGKTFVVGLGGELVEGGNL-------GNIVADIALLHSLGVRLVLVHGARPQIER 63 (429)
T ss_pred ChhHHhhhh-HHHHHhCCCEEEEEEChhhccCccH-------HHHHHHHHHHHHCCCcEEEEcCCCHHHHH
Confidence 456677765 7789999999999999877764322 23445556677778899999999977543
No 25
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=63.36 E-value=1.2e+02 Score=27.69 Aligned_cols=25 Identities=8% Similarity=0.380 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC
Q 017484 178 RLFKTIISKVVETYAPGAIVLQCGA 202 (371)
Q Consensus 178 ~~f~~vi~~~~~~f~Pd~Ivvq~G~ 202 (371)
..+++++..+.++|++|+||+=++.
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~pp 158 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTPP 158 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCC
Confidence 3467777777788888999998773
No 26
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=62.85 E-value=24 Score=34.98 Aligned_cols=61 Identities=26% Similarity=0.366 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecC----HHHHHHHHHHHHhc--CCCeEEEccCCCC
Q 017484 182 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS----IDGHAECVRFVKKF--NLPLLVTGGGGYT 243 (371)
Q Consensus 182 ~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt----~~g~~~~~~~l~~~--~~pvl~l~gGGY~ 243 (371)
..|..++++++||++| -+|.|++..+.-....|. .+-|-++++.++.+ +.-=|++..|.=.
T Consensus 144 ~~i~~Ll~~~~PDIlV-iTGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQ 210 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILV-ITGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQ 210 (287)
T ss_pred HHHHHHHHHcCCCEEE-EeCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcchhH
Confidence 3567889999999865 589999877653222332 23455677777776 3334555556433
No 27
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=62.39 E-value=24 Score=31.84 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=36.3
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCH----HHHHHHHHHHHhcCCCeEE
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSI----DGHAECVRFVKKFNLPLLV 236 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~----~g~~~~~~~l~~~~~pvl~ 236 (371)
.+|.-+...+. ...+..|. ..+..++||+||++.|. |... .++. +.+.++++.+++.+.++++
T Consensus 46 v~N~Gi~G~tt-~~~~~rl~----~~l~~~~pd~Vii~~GtND~~~-------~~~~~~~~~~l~~li~~~~~~~~~~il 113 (191)
T PRK10528 46 VVNASISGDTS-QQGLARLP----ALLKQHQPRWVLVELGGNDGLR-------GFPPQQTEQTLRQIIQDVKAANAQPLL 113 (191)
T ss_pred EEecCcCcccH-HHHHHHHH----HHHHhcCCCEEEEEeccCcCcc-------CCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 46655533222 23334444 34456799999999998 4432 2344 4455566677766555444
Q ss_pred E
Q 017484 237 T 237 (371)
Q Consensus 237 l 237 (371)
+
T Consensus 114 l 114 (191)
T PRK10528 114 M 114 (191)
T ss_pred E
Confidence 3
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=62.32 E-value=36 Score=30.63 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhc---CCCeEEEcc
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF---NLPLLVTGG 239 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~---~~pvl~l~g 239 (371)
.++...+|+.++.. +.+.+||+||+ +| |.... ...+.+-+..+.+.++++ ++|++++.|
T Consensus 23 ~~~~~~~~~~~~~~-~~~~~~d~i~~-~G-D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G 84 (223)
T cd00840 23 REDQFEAFEEIVEL-AIEEKVDFVLI-AG-DLFDS-----NNPSPEALELLIEALRRLKEAGIPVFIIAG 84 (223)
T ss_pred hHHHHHHHHHHHHH-HHhcCCCEEEE-CC-cccCC-----CCCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 45677888888755 56679998655 33 44332 233444455566666555 788877755
No 29
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=61.05 E-value=11 Score=34.36 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=27.4
Q ss_pred HHhcCCCEEEEecCCC-CCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEE
Q 017484 188 VETYAPGAIVLQCGAD-SLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 237 (371)
Q Consensus 188 ~~~f~Pd~Ivvq~G~D-~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l 237 (371)
+..++|++|||.+|.. ...+- ...-..+.+.++++.+++. +.+++++
T Consensus 85 l~~~~pd~VvI~~G~ND~~~~~---~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 85 LDGVNPKVVVLLIGTNNIGHTT---TAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred ccCCCCCEEEEEecccccCCCC---CHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4567999999999994 32221 1111234455666667665 3455544
No 30
>PRK05279 N-acetylglutamate synthase; Validated
Probab=60.37 E-value=29 Score=35.83 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchh
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 246 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~ 246 (371)
..|...|+..+ |-+.+|+=..+||-.|-.++..+ ++ +.+..-+..++..+.+++++-|||..+..
T Consensus 7 ~~~~~~~~~~~-~~i~~~~~~~~VIk~GG~~l~~~-----~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~ 71 (441)
T PRK05279 7 TEFVDWFRHSA-PYINAHRGKTFVIMLGGEAIAHG-----NF--SNIVHDIALLHSLGIRLVLVHGARPQIEE 71 (441)
T ss_pred hHHHHHHHHHh-HHHHHhCCCEEEEEECchhccCh-----hH--HHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 35888888875 66788998899999998888643 12 23444455566678899999999988654
No 31
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=59.07 E-value=35 Score=28.64 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 181 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 181 ~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
+..+..+.+.++||+|.+++= ..+.....++.+.+|+....+.++.||.+.
T Consensus 28 ~~~~~~~~~~~~pdiv~~S~~------------~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~ 78 (127)
T cd02068 28 DDIVEDIKELLKPDVVGISLM------------TSAIYEALELAKIAKEVLPNVIVVVGGPHA 78 (127)
T ss_pred HHHHHHHHHhcCCCEEEEeec------------cccHHHHHHHHHHHHHHCCCCEEEECCcch
Confidence 344445444499999999741 122234556778888876556666666654
No 32
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=57.91 E-value=29 Score=30.65 Aligned_cols=67 Identities=15% Similarity=0.049 Sum_probs=39.3
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHh--cCCCeEEE
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKK--FNLPLLVT 237 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~--~~~pvl~l 237 (371)
..|+.. .|.+-.+++..++. +..++||+|++..|. |...+.+ ..-..+.+.++++.+++ -+.+++++
T Consensus 43 ~~n~g~-~G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~~~---~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 43 WRLFAK-TGATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHLTS---IARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred EEEEec-CCcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCCCC---HHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 355554 34445556655544 446899999999999 5443221 12223455567777776 35666655
No 33
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=54.29 E-value=39 Score=31.23 Aligned_cols=59 Identities=25% Similarity=0.405 Sum_probs=44.0
Q ss_pred eEEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEc
Q 017484 161 YAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTG 238 (371)
Q Consensus 161 ~~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~ 238 (371)
|.||+ +.+..+.-+.|..+++. -|+|++ |-.|.|.|..+.|.+.++.+...+.|+++++
T Consensus 79 Y~V~v--------~~le~i~~~al~rA~~~--aDvIII---------DEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 79 YGVNV--------EGLEEIAIPALRRALEE--ADVIII---------DEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred EEeeH--------HHHHHHhHHHHHHHhhc--CCEEEE---------ecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 66776 33444555555555443 577776 8999999999999999999998899988764
No 34
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=53.55 E-value=43 Score=34.48 Aligned_cols=72 Identities=15% Similarity=0.320 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCchhhHHHHHHHH
Q 017484 178 RLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVET 255 (371)
Q Consensus 178 ~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~~~~ar~~~~~t 255 (371)
.-+++.|..+.++|+|++|+|.++. ..+.||-+. .+++.++ +.++||+.+--.||.-.+....|....
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~----------~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~ 144 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVE----------SVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAF 144 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccCHH----------HHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHH
Confidence 4566677788889999987776664 555566432 2444443 458999999999998755444454444
Q ss_pred hhhh
Q 017484 256 GILL 259 (371)
Q Consensus 256 ~~ll 259 (371)
..++
T Consensus 145 ~al~ 148 (426)
T cd01972 145 HGIL 148 (426)
T ss_pred HHHH
Confidence 3333
No 35
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.08 E-value=43 Score=29.70 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=16.1
Q ss_pred HHHHHhcCCCEEEEecCC-CCC
Q 017484 185 SKVVETYAPGAIVLQCGA-DSL 205 (371)
Q Consensus 185 ~~~~~~f~Pd~Ivvq~G~-D~~ 205 (371)
...+.+.+||+|++..|. |..
T Consensus 52 ~~~l~~~~pd~vii~~G~ND~~ 73 (200)
T cd01829 52 KELIAEEKPDVVVVFLGANDRQ 73 (200)
T ss_pred HHHHhcCCCCEEEEEecCCCCc
Confidence 344567899999999999 543
No 36
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=52.81 E-value=1.1e+02 Score=29.89 Aligned_cols=61 Identities=26% Similarity=0.426 Sum_probs=35.3
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEEccCCCCchhhHHHHHHHHhhhhC
Q 017484 186 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVTGGGGYTKENVARCWTVETGILLD 260 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l~gGGY~~~~~ar~~~~~t~~llg 260 (371)
..+..-.+|.|+++-=.-+..-| + +.++.+++. ..| ++++||=++.|+.+.+...-++.+|
T Consensus 165 ~~~~~~~aDavivtG~~TG~~~d------~------~~l~~vr~~~~~~P--vllggGvt~eNv~e~l~~adGviVg 227 (257)
T TIGR00259 165 DTVERGLADAVILSGKTTGTEVD------L------ELLKLAKETVKDTP--VLAGSGVNLENVEELLSIADGVIVA 227 (257)
T ss_pred HHHHhcCCCEEEECcCCCCCCCC------H------HHHHHHHhccCCCe--EEEECCCCHHHHHHHHhhCCEEEEC
Confidence 33344458998875322222222 1 234445442 456 4679999999999988763344444
No 37
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=52.29 E-value=39 Score=30.17 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=26.4
Q ss_pred CCCEEEEecCC-CCCCCCcCcceecCHHHH----HHHHHHHHhcCCCeEEE
Q 017484 192 APGAIVLQCGA-DSLAGDRLGCFNLSIDGH----AECVRFVKKFNLPLLVT 237 (371)
Q Consensus 192 ~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~----~~~~~~l~~~~~pvl~l 237 (371)
+||+||++.|. |+..+.+ ....+.+-| .++++.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~~--~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDP--EYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCCC--CCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 79999999998 5544321 112334444 44666666666665554
No 38
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=51.89 E-value=76 Score=25.92 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=33.2
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCC--CeEEEcc
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL--PLLVTGG 239 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~--pvl~l~g 239 (371)
++|+|+.. +..-+..++.. +...+...||+.|+..... +......+.+.+++.+. .-+..+.
T Consensus 42 Ai~ip~~~------~~~~~~~~~~~-~~~~~~~~iv~~C~~~g~r---------s~~a~~~l~~~l~~~G~~~~~v~~l~ 105 (113)
T cd01443 42 SINLPAQS------CYQTLPQVYAL-FSLAGVKLAIFYCGSSQGR---------GPRAARWFADYLRKVGESLPKSYILT 105 (113)
T ss_pred ceecchhH------HHHHHHHHHHH-hhhcCCCEEEEECCCCCcc---------cHHHHHHHHHHHhccCCCCCeEEEEC
Confidence 58898853 22222233322 2234567788888743222 12222233344444443 3466779
Q ss_pred CCCC
Q 017484 240 GGYT 243 (371)
Q Consensus 240 GGY~ 243 (371)
||++
T Consensus 106 GG~~ 109 (113)
T cd01443 106 GGIK 109 (113)
T ss_pred Chhh
Confidence 9985
No 39
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.07 E-value=39 Score=30.53 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=28.5
Q ss_pred HHHhcCCCEEEEecCC-CCCCCCcC-cceecCH----HHHHHHHHHHHhcCCCeEE
Q 017484 187 VVETYAPGAIVLQCGA-DSLAGDRL-GCFNLSI----DGHAECVRFVKKFNLPLLV 236 (371)
Q Consensus 187 ~~~~f~Pd~Ivvq~G~-D~~~gDpl-g~~~Lt~----~g~~~~~~~l~~~~~pvl~ 236 (371)
++..-+|++|+|..|. |...+..- +.-.++. +.+.++++.+++.+.++++
T Consensus 69 v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 69 VLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred HhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3444579999999999 54433210 0111233 4455666777766666554
No 40
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=50.41 E-value=85 Score=32.43 Aligned_cols=71 Identities=14% Similarity=0.262 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEec-CCCCCCCCcCcceecCHHHHHHHHHHHHh----cCCCeEEEccCCCCchhhHHHHHH
Q 017484 179 LFKTIISKVVETYAPGAIVLQC-GADSLAGDRLGCFNLSIDGHAECVRFVKK----FNLPLLVTGGGGYTKENVARCWTV 253 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~-G~D~~~gDplg~~~Lt~~g~~~~~~~l~~----~~~pvl~l~gGGY~~~~~ar~~~~ 253 (371)
-+++.|..+.++|+|++|+|.. ......||.+ ..+++.++. .+.|++.+--.||.- +....|..
T Consensus 71 kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdDi----------~~v~~~~~~~~~~~~~~vi~v~t~gF~g-~~~~G~~~ 139 (429)
T cd03466 71 NLKKGLKNVIEQYNPEVIGIATTCLSETIGEDV----------PRIIREFREEVDDSEPKIIPASTPGYGG-THVEGYDT 139 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHhhcCH----------HHHHHHHhhcccCCCCcEEEEECCCCcc-cHHHHHHH
Confidence 4555667788889999866554 4466777742 224444443 367999998899974 44456655
Q ss_pred HHhhhhC
Q 017484 254 ETGILLD 260 (371)
Q Consensus 254 ~t~~llg 260 (371)
....++.
T Consensus 140 a~~al~~ 146 (429)
T cd03466 140 AVRSIVK 146 (429)
T ss_pred HHHHHHH
Confidence 5555553
No 41
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=49.64 E-value=53 Score=33.24 Aligned_cols=67 Identities=16% Similarity=0.338 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCchhhHHHHHHH
Q 017484 178 RLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVE 254 (371)
Q Consensus 178 ~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~~~~ar~~~~~ 254 (371)
..+++.|..+.++|+|++|+|..+. ....||.+. .+++.++ +.++|++.+--.||.-.+....|...
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~----------~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a 141 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIE----------AVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIA 141 (406)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhccCHH----------HHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHH
Confidence 3566677788889999977665554 666666432 2333343 35789999888888764444444433
No 42
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=49.59 E-value=1.1e+02 Score=31.29 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCch
Q 017484 179 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKE 245 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G-~D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~~ 245 (371)
-+++.|..+.++|+|++|+|.+. ...+.||.+. .+++.++ +.+.|++.+--.||...
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi~----------~v~~~~~~~~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDLQ----------NFVRAAGLSSKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCHH----------HHHHHhhhccCCCeEEecCCCccch
Confidence 45556667788899998777766 5777777542 2333333 35889999988998864
No 43
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=48.81 E-value=64 Score=33.51 Aligned_cols=69 Identities=12% Similarity=0.204 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHh-----cCCCeEEEccCCCCchhhHHHHH
Q 017484 179 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKK-----FNLPLLVTGGGGYTKENVARCWT 252 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~-----~~~pvl~l~gGGY~~~~~ar~~~ 252 (371)
-+++.|..+.++|+|++|+|.++. ....||-+.. +++.++. .++|++.+--.||.- +....|.
T Consensus 78 ~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi~~----------v~~~~~~e~p~~~~~pvi~v~tpgf~g-~~~~G~~ 146 (432)
T TIGR01285 78 HIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDIAR----------VVRQFREKHPQHKGTAVVTVNTPDFKG-SLEDGYA 146 (432)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccccccCHHH----------HHHHHHhhcccccCCeEEEecCCCcCC-chHHHHH
Confidence 355566677889999987776554 6677775432 3344433 378999999999985 3344444
Q ss_pred HHHhhh
Q 017484 253 VETGIL 258 (371)
Q Consensus 253 ~~t~~l 258 (371)
.....+
T Consensus 147 ~a~~al 152 (432)
T TIGR01285 147 AAVESI 152 (432)
T ss_pred HHHHHH
Confidence 333333
No 44
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=48.39 E-value=1.1e+02 Score=31.73 Aligned_cols=119 Identities=18% Similarity=0.191 Sum_probs=67.4
Q ss_pred HHHHHHHhCCcEEEEeccccCcc----ccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecC-CCCC
Q 017484 97 GILELLKYHARVLYIDIDVHHGD----GVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPL-KDGI 171 (371)
Q Consensus 97 ai~~ll~~~~RVliiD~DvHHGd----Gtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL-~~G~ 171 (371)
-+.|+.|...|.+++|+|+-+|- |+-.++.-+. .+. |- -|...-..-..|+-+ .+..
T Consensus 123 L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~---~~D---------~~------eGf~l~~pLV~~FG~~sp~~ 184 (415)
T KOG2749|consen 123 LLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEM---PLD---------VI------EGFSLTAPLVYNFGLTSPST 184 (415)
T ss_pred HHHHHHHcCCcceEEEcCCCCCceecccchhheeccc---ccc---------hh------hCcccCCceeeeccCCCCCc
Confidence 44577788899999999997762 4433332210 000 00 011111123345555 4566
Q ss_pred ChHHHHHHHHHHHHHHHHhc--CCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccC
Q 017484 172 DDTSFTRLFKTIISKVVETY--APGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGG 240 (371)
Q Consensus 172 ~D~~y~~~f~~vi~~~~~~f--~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gG 240 (371)
+-+-|..++.++-.-+-+++ +|++= .+|. .=|-.| |.. -+||+.+...++.|+.-+++++|-
T Consensus 185 N~~LY~~~~s~La~v~~~~~~~n~~ar--~sG~---iInT~g-~i~-~egy~~llhai~~f~v~vviVLg~ 248 (415)
T KOG2749|consen 185 NLELYKALVSELAEVLKQRLSLNPEAR--VSGC---IINTCG-WIE-GEGYAALLHAIKAFEVDVVIVLGQ 248 (415)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCchhc--ccce---EEeccc-eec-cccHHHHHHHHHHcCccEEEEecc
Confidence 77788888877666666665 33321 1110 002122 333 688999999999999988877763
No 45
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=47.94 E-value=42 Score=29.31 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=28.7
Q ss_pred HHHHHhc---CCCEEEEecCC-CCCCCCcCcceecCHHHH----HHHHHHHHh--cCCCeEEE
Q 017484 185 SKVVETY---APGAIVLQCGA-DSLAGDRLGCFNLSIDGH----AECVRFVKK--FNLPLLVT 237 (371)
Q Consensus 185 ~~~~~~f---~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~----~~~~~~l~~--~~~pvl~l 237 (371)
...+..+ +||+||++.|. |..... ..-..+.+-| .++++.+++ .+.+++++
T Consensus 53 ~~~~~~~~~~~pd~vii~~G~ND~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 53 PKIFLEEKLAQPDLVTIFFGANDAALPG--QPQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred HHhcCccccCCceEEEEEecCccccCCC--CCCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 3444445 89999999998 443321 1012344444 445566665 35666665
No 46
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.61 E-value=45 Score=29.30 Aligned_cols=48 Identities=10% Similarity=0.374 Sum_probs=29.4
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEE
Q 017484 185 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 237 (371)
Q Consensus 185 ~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l 237 (371)
..++...+|++||+..|..=...+. -..+.+.++++.+++. +.|++++
T Consensus 50 ~~~~~~~~pd~vii~~G~ND~~~~~-----~~~~~~~~~i~~i~~~~p~~~iil~ 99 (177)
T cd01844 50 AELLRDVPADLYIIDCGPNIVGAEA-----MVRERLGPLVKGLRETHPDTPILLV 99 (177)
T ss_pred HHHHHhcCCCEEEEEeccCCCccHH-----HHHHHHHHHHHHHHHHCcCCCEEEE
Confidence 3455668999999999985322111 2245555667777664 3465554
No 47
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=47.42 E-value=7.8 Score=37.53 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCEEEEecCC---CCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEE
Q 017484 184 ISKVVETYAPGAIVLQCGA---DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 237 (371)
Q Consensus 184 i~~~~~~f~Pd~Ivvq~G~---D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l 237 (371)
+..+++.++||+||..+|. |....+|...+.+...+-..+.+.++..+.|++.+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEe
Confidence 3455677899999999987 44555776667776777778888888888887665
No 48
>PLN02825 amino-acid N-acetyltransferase
Probab=46.58 E-value=48 Score=35.53 Aligned_cols=64 Identities=13% Similarity=0.291 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhh
Q 017484 176 FTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENV 247 (371)
Q Consensus 176 y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ 247 (371)
|+..|++.. |-+.+|+=..+||-.|-.++..+ . .+.+..-+.+|.+.++++++|-|||..+...
T Consensus 1 ~v~~fr~a~-pYI~~~rgktfVIk~gG~~l~~~---~----~~~l~~DialL~~lGi~~VlVHGggpqI~~~ 64 (515)
T PLN02825 1 FVRWFREAW-PYIQGHRGSTFVVVISGEVVAGP---H----LDNILQDISLLHGLGIKFVLVPGTHVQIDKL 64 (515)
T ss_pred ChhHHHhhh-HHHHHHCCCEEEEEECchhhcCc---h----HHHHHHHHHHHHHCCCCEEEEcCCCHHHHHH
Confidence 456677765 77899999999999998888743 1 2344555667888899999999999886543
No 49
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=46.53 E-value=62 Score=33.84 Aligned_cols=70 Identities=11% Similarity=0.258 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc-----CCCeEEEccCCCCchhhHHHHH
Q 017484 179 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF-----NLPLLVTGGGGYTKENVARCWT 252 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~-----~~pvl~l~gGGY~~~~~ar~~~ 252 (371)
-+++.|..+.++|+|++|+|.++. -...||-+. .+++.++.. ++|++.+--.||.- +....|.
T Consensus 79 ~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDDi~----------~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~~ 147 (455)
T PRK14476 79 NVEEAILNICKKAKPKIIGLCTTGLTETRGDDVA----------GALKEIRARHPELADTPIVYVSTPDFKG-ALEDGWA 147 (455)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCcchHhhhhccHH----------HHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHHH
Confidence 344556677788999988766554 777777532 233333322 68999999999975 3445554
Q ss_pred HHHhhhh
Q 017484 253 VETGILL 259 (371)
Q Consensus 253 ~~t~~ll 259 (371)
.....++
T Consensus 148 ~a~~al~ 154 (455)
T PRK14476 148 AAVEAIV 154 (455)
T ss_pred HHHHHHH
Confidence 4443433
No 50
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=46.43 E-value=44 Score=35.46 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCch
Q 017484 178 RLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 245 (371)
Q Consensus 178 ~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~ 245 (371)
..+++.|..+.++|+|++|+|.++. -.+.||.++. +++.+...++|++.+--.||...
T Consensus 71 ~~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~----------~~~~~~~~~~pvi~v~t~gf~g~ 129 (511)
T TIGR01278 71 TRLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGN----------LAAAAGLDKSKVIVADVNAYRRK 129 (511)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHH----------HHHHhccCCCcEEEecCCCcccc
Confidence 3455667777889999988887776 7777776543 22323222689999988888764
No 51
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=46.12 E-value=47 Score=34.26 Aligned_cols=58 Identities=19% Similarity=0.382 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchh
Q 017484 179 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 246 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G-~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~ 246 (371)
-+++.|..+.++|+|++|+|... .....||.+. .+++.+++.+.|++.+--.||....
T Consensus 73 kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~----------~v~~~~~~~~~~vi~v~t~gf~g~~ 131 (427)
T cd01971 73 RLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVG----------AVVSEFQEGGAPIVYLETGGFKGNN 131 (427)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHH----------HHHHHhhhcCCCEEEEECCCcCccc
Confidence 45556667788899997766554 4666676532 2333345567888888888888643
No 52
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=45.45 E-value=80 Score=31.84 Aligned_cols=63 Identities=13% Similarity=0.226 Sum_probs=43.4
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhc---CCCeEEEccCCCC
Q 017484 172 DDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF---NLPLLVTGGGGYT 243 (371)
Q Consensus 172 ~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~---~~pvl~l~gGGY~ 243 (371)
--+++..+|..++.. +.+-++|+||++ ||-.=..+.|.+.-....+.++.+ ++|++++ .|-..
T Consensus 21 r~~d~~~~f~~~l~~-a~~~~vD~vliA-------GDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I-~GNHD 86 (390)
T COG0420 21 RLEDQKKAFDELLEI-AKEEKVDFVLIA-------GDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVI-AGNHD 86 (390)
T ss_pred chHHHHHHHHHHHHH-HHHccCCEEEEc-------cccccCCCCCHHHHHHHHHHHHHhccCCCcEEEe-cCCCC
Confidence 356788888888755 666789998764 565555667777666666666655 6999887 44433
No 53
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=44.67 E-value=78 Score=30.90 Aligned_cols=64 Identities=14% Similarity=0.278 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCch
Q 017484 175 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 245 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~ 245 (371)
+....|++.. |-+.+|+=..+|+-.|-+++..+.+ .+.+.+=+.++++.+.+++++-|||....
T Consensus 6 ~~~~~~~~~~-pyi~~~~~~~~VIk~gG~~~~~~~l------~~~~~~di~~l~~~g~~~VlVHGgg~~i~ 69 (284)
T CHL00202 6 ERVQVLSEAL-PYIQKFRGRIMVIKYGGAAMKNLIL------KADIIKDILFLSCIGLKIVVVHGGGPEIN 69 (284)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcch------HHHHHHHHHHHHHCCCcEEEEeCCcHHHH
Confidence 5577788875 7789999999999999888764422 11233344556677899999999998654
No 54
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=44.42 E-value=92 Score=26.52 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=33.1
Q ss_pred HHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhh
Q 017484 188 VETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENV 247 (371)
Q Consensus 188 ~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ 247 (371)
+...++|.||+.+| |+ .|...++.+++.+.+|++++-.+.....+
T Consensus 95 ~~~~~~d~ivLvSg-D~--------------Df~~~i~~lr~~G~~V~v~~~~~~~s~~L 139 (149)
T cd06167 95 AYKRRIDTIVLVSG-DS--------------DFVPLVERLRELGKRVIVVGFEAKTSREL 139 (149)
T ss_pred hhhcCCCEEEEEEC-Cc--------------cHHHHHHHHHHcCCEEEEEccCccChHHH
Confidence 33348999999998 43 45668899999999999987774444333
No 55
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=43.05 E-value=66 Score=31.34 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=45.8
Q ss_pred ccccccccCCcEEEEeccccCCCCCCC--CCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHHHHHHHh---cCCC
Q 017484 120 GVEEAFYFTDRVMTVSFHKFGDLFFPG--TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVET---YAPG 194 (371)
Q Consensus 120 Gtq~~F~~d~~VltiSiH~~~~~ffPg--tG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi~~~~~~---f~Pd 194 (371)
+--.+|+-|.|+.-.+ |.+. .|=. .+.++.+-.-...-|.+|-.|.. +.++=...++..+...+.. -+.|
T Consensus 70 ~kW~if~~DER~Vp~~-~~dS--Nyg~~~~~~l~~v~~~~~~i~~id~~L~~--~~~~~a~~ye~~l~~~v~~~s~p~FD 144 (252)
T KOG3147|consen 70 SKWHIFFVDERVVPLD-DPDS--NYGLAKRHFLSKVPIPHYNIYPIDESLIA--DAEEAADLYEKELKALVANDSFPVFD 144 (252)
T ss_pred cceEEEEEeccccCCC-CCcc--cHHHHHHhhhhhCCCCcCcEEECChhhcc--CHHHHHHHHHHHHHHHhccCCCccee
Confidence 5566888888887665 2221 1110 12222222222234677777764 2333333444444444443 3579
Q ss_pred EEEEecCCCCCCCC
Q 017484 195 AIVLQCGADSLAGD 208 (371)
Q Consensus 195 ~Ivvq~G~D~~~gD 208 (371)
++++-||.|+|.--
T Consensus 145 L~LLG~GpDGHtaS 158 (252)
T KOG3147|consen 145 LLLLGMGPDGHTAS 158 (252)
T ss_pred EEEeccCCCCCeee
Confidence 99999999999754
No 56
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=42.98 E-value=71 Score=34.04 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCchhh
Q 017484 178 RLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENV 247 (371)
Q Consensus 178 ~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~~~~ 247 (371)
..+...|..+.++|+|++|+|.++. =.+.||-++. +++.++ ..++||+.+--.||.....
T Consensus 71 ~kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi~~----------v~~~~~~~~~~pVi~v~t~~f~g~~~ 132 (513)
T CHL00076 71 EKVVDNITRKDKEERPDLIVLTPTCTSSILQEDLQN----------FVDRASIESDSDVILADVNHYRVNEL 132 (513)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCchhhhhcCHHH----------HHHHhhcccCCCEEEeCCCCCcccHH
Confidence 3455566677889999999998775 3344443322 334343 3578999999999986543
No 57
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=42.83 E-value=27 Score=32.20 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.3
Q ss_pred HHHhCCcEEEEeccccCcc
Q 017484 101 LLKYHARVLYIDIDVHHGD 119 (371)
Q Consensus 101 ll~~~~RVliiD~DvHHGd 119 (371)
|.+...||++||+|.++||
T Consensus 25 la~~g~~VlliD~D~~~~~ 43 (251)
T TIGR01969 25 LAKLGKKVLALDADITMAN 43 (251)
T ss_pred HHHCCCeEEEEeCCCCCcc
Confidence 3345689999999998876
No 58
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=42.66 E-value=88 Score=32.15 Aligned_cols=56 Identities=11% Similarity=0.267 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEec-CCCCCCCCcCcceecCHHHHHHHHHHHHh-----cCCCeEEEccCCCCc
Q 017484 179 LFKTIISKVVETYAPGAIVLQC-GADSLAGDRLGCFNLSIDGHAECVRFVKK-----FNLPLLVTGGGGYTK 244 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~-G~D~~~gDplg~~~Lt~~g~~~~~~~l~~-----~~~pvl~l~gGGY~~ 244 (371)
-+++.|..+.++++|++|+|.. ....+.||.+- .+++.++. .+.|++.+--.||.-
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdDi~----------~v~~~~~~~~~~~~~~~vi~v~tpgf~g 129 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDDVA----------GFIKEFRAEGPEPADFPVVYASTPSFKG 129 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCCHH----------HHHHHHHhhccCCCCCeEEEeeCCCCCC
Confidence 3455666777889999765544 44666666432 23444442 467777777777774
No 59
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=41.29 E-value=1e+02 Score=29.23 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 179 LFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
+++.++. .+++-+||+||+ | || +..+....+.+.++++.+.+++.|++++-| -.+
T Consensus 19 ~le~l~~-~~~~~~~D~vv~-~------GD-l~~~g~~~~~~~~~l~~l~~l~~pv~~V~G-NhD 73 (224)
T cd07388 19 ALEKLVG-LAPETGADAIVL-I------GN-LLPKAAKSEDYAAFFRILGEAHLPTFYVPG-PQD 73 (224)
T ss_pred HHHHHHH-HHhhcCCCEEEE-C------CC-CCCCCCCHHHHHHHHHHHHhcCCceEEEcC-CCC
Confidence 3444443 345568998765 3 45 333444567788888888888889987754 444
No 60
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=40.67 E-value=91 Score=25.55 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=32.1
Q ss_pred HHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHh--cCCCeEEEccC
Q 017484 185 SKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKK--FNLPLLVTGGG 240 (371)
Q Consensus 185 ~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~--~~~pvl~l~gG 240 (371)
...+..++|++||++.|. |.... +........+.+.++++.+++ .+.+++++.--
T Consensus 58 ~~~~~~~~~d~vil~~G~ND~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~ 115 (187)
T cd00229 58 RLALLKDKPDLVIIELGTNDLGRG-GDTSIDEFKANLEELLDALRERAPGAKVILITPP 115 (187)
T ss_pred hhhhccCCCCEEEEEecccccccc-cccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 355678999999999998 44332 101122334445566666664 35566665433
No 61
>PRK04531 acetylglutamate kinase; Provisional
Probab=40.57 E-value=49 Score=34.17 Aligned_cols=53 Identities=17% Similarity=0.377 Sum_probs=40.4
Q ss_pred HHHHhcCC----CEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchh
Q 017484 186 KVVETYAP----GAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKEN 246 (371)
Q Consensus 186 ~~~~~f~P----d~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~ 246 (371)
+-++.|+- ..+||-.|-..+.. + .+.+...+.++.+.+.++++|-|||..+..
T Consensus 25 ~~l~~F~~~~~~~~~VIKiGG~~l~~-~-------~~~l~~dla~L~~~G~~~VlVHGggpqI~~ 81 (398)
T PRK04531 25 QYLKRFSQLDAERFAVIKVGGAVLRD-D-------LEALASSLSFLQEVGLTPIVVHGAGPQLDA 81 (398)
T ss_pred HHHHHHhCcCCCcEEEEEEChHHhhc-C-------HHHHHHHHHHHHHCCCcEEEEECCCHHHHH
Confidence 44555664 78899999888763 2 266777888888999999999999987654
No 62
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=40.54 E-value=46 Score=35.12 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHH-HhcCCCeEEEccCCCC
Q 017484 180 FKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFV-KKFNLPLLVTGGGGYT 243 (371)
Q Consensus 180 f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l-~~~~~pvl~l~gGGY~ 243 (371)
++.++..++++|+|++|||.++. =.+.+|.+ ++ +.+.+ ++.++||+.+-..|+.
T Consensus 85 L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDl-------e~---va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 85 LKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDL-------EG---MAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHhCCCCEEEEEccCcHHhhccCH-------HH---HHHHHHHhhCCCEEEEeCCCcc
Confidence 44567788999999999998875 22334432 22 33333 3569999999999987
No 63
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=39.94 E-value=93 Score=32.36 Aligned_cols=56 Identities=23% Similarity=0.411 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCc
Q 017484 179 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTK 244 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G-~D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~ 244 (371)
-+.+.|..+.++|+|++|+|.+. ...+.||.+.. +.+.++ ..+.||+.+--.||.-
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~----------v~~e~~~~~~~~vi~v~t~gf~g 165 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEA----------VCKAAAEKTGIPVIPVDSEGFYG 165 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHH----------HHHHHHHHhCCCEEEEECCCCcc
Confidence 44555667778899998766554 46667765322 333333 3589999999999865
No 64
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=39.75 E-value=17 Score=27.96 Aligned_cols=52 Identities=15% Similarity=0.440 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHH----HHHHHHHHHhcCC
Q 017484 181 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG----HAECVRFVKKFNL 232 (371)
Q Consensus 181 ~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g----~~~~~~~l~~~~~ 232 (371)
+++|..+..+|+-++=+++++.|...+.|+|.|-+...| ..+..+++++.++
T Consensus 16 ~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 16 EPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp SCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred chHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 357888899999999999999999999999998776533 4567777776554
No 65
>PRK13236 nitrogenase reductase; Reviewed
Probab=39.28 E-value=34 Score=33.42 Aligned_cols=23 Identities=13% Similarity=0.184 Sum_probs=17.5
Q ss_pred HhCCcEEEEeccccCccccccccc
Q 017484 103 KYHARVLYIDIDVHHGDGVEEAFY 126 (371)
Q Consensus 103 ~~~~RVliiD~DvHHGdGtq~~F~ 126 (371)
+..+|||+||.|.+.++ +.-.|.
T Consensus 32 ~~G~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 32 EMGQRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HCCCcEEEEEccCCCCc-cchhcc
Confidence 45799999999999877 444443
No 66
>PLN02512 acetylglutamate kinase
Probab=38.89 E-value=1e+02 Score=30.59 Aligned_cols=66 Identities=14% Similarity=0.278 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCch
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 245 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~ 245 (371)
.-.|...|++.. |-+..|+=..+|+-.|-+++....+ .+.+.+-+..++..+.+++++-|||....
T Consensus 28 ~~~~~~~~r~~~-pyi~~~~~~tiVIKlGGs~i~d~~~------~~~~~~di~~l~~~g~~iVlVHGgG~~i~ 93 (309)
T PLN02512 28 NLSRVDILSEAL-PFIQRFRGKTVVVKYGGAAMKDPEL------KAGVIRDLVLLSCVGLRPVLVHGGGPEIN 93 (309)
T ss_pred hHHHHHHHHHHh-HHHHHHCCCeEEEEECCeeccChhH------HHHHHHHHHHHHHCCCCEEEEECCcHHHH
Confidence 337888999875 8889999999999999877654321 11222233356677888888888987643
No 67
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=38.72 E-value=1.2e+02 Score=31.90 Aligned_cols=69 Identities=7% Similarity=0.203 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhc-CCCEE-EEecCCCCCCCCcCcceecCHHHHHHHHHHHHh---------cCCCeEEEccCCCCchhhH
Q 017484 180 FKTIISKVVETY-APGAI-VLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK---------FNLPLLVTGGGGYTKENVA 248 (371)
Q Consensus 180 f~~vi~~~~~~f-~Pd~I-vvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~---------~~~pvl~l~gGGY~~~~~a 248 (371)
+++.|..+.++| +|++| |++++.....||.+.. +++.+++ .+.|++.+--+||.- +..
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi~~----------v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~g-s~~ 148 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDVDG----------LISKLNEELLKEKFPDREVHLIPIHTPSFVG-SMI 148 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCHHH----------HHHHHHhhhcccccCCCCCeEEEeeCCCCCC-cHH
Confidence 556777888889 59986 5566668888885322 3333321 256899999999986 345
Q ss_pred HHHHHHHhhhh
Q 017484 249 RCWTVETGILL 259 (371)
Q Consensus 249 r~~~~~t~~ll 259 (371)
..|...+..++
T Consensus 149 ~Gy~~a~~ali 159 (461)
T TIGR02931 149 TGYDVAVHDFV 159 (461)
T ss_pred HHHHHHHHHHH
Confidence 55655555555
No 68
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=38.67 E-value=44 Score=29.83 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=16.1
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEE
Q 017484 172 DDTSFTRLFKTIISKVVETYAPGAIVL 198 (371)
Q Consensus 172 ~D~~y~~~f~~vi~~~~~~f~Pd~Ivv 198 (371)
.+......+...+..++.+++|++|+|
T Consensus 43 ~~~~~~~~~~~~l~~~i~~~kP~vI~v 69 (150)
T PF14639_consen 43 RDRERKEEDMERLKKFIEKHKPDVIAV 69 (150)
T ss_dssp T-SS-SHHHHHHHHHHHHHH--SEEEE
T ss_pred cchHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 344444455555667788899999999
No 69
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=38.35 E-value=53 Score=33.03 Aligned_cols=55 Identities=20% Similarity=0.507 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHh-cCCCeEEEccCCCC
Q 017484 179 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKK-FNLPLLVTGGGGYT 243 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~-~~~pvl~l~gGGY~ 243 (371)
-+++.|..+.++++|++|+|.... ....||.+ ..+.+.++. .+.|++.+--.||.
T Consensus 61 kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGdD~----------~~v~~~~~~~~~~~vi~v~~~gf~ 117 (398)
T PF00148_consen 61 KLREAIKEIAEKYKPKAIFVVTSCVPEIIGDDI----------EAVARELQEEYGIPVIPVHTPGFS 117 (398)
T ss_dssp HHHHHHHHHHHHHSTSEEEEEE-HHHHHTTTTH----------HHHHHHHHHHHSSEEEEEE--TTS
T ss_pred hHHHHHHHHHhcCCCcEEEEECCCCHHHhCCCH----------HHHHHHhhcccCCcEEEEECCCcc
Confidence 455566677888999998776543 55555532 234555543 47899999999993
No 70
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=37.35 E-value=3.1e+02 Score=24.62 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=12.9
Q ss_pred HhCCcEEEEeccccCc
Q 017484 103 KYHARVLYIDIDVHHG 118 (371)
Q Consensus 103 ~~~~RVliiD~DvHHG 118 (371)
+...||++||.|....
T Consensus 44 ~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 44 QAGYKTLLIDGDMRNS 59 (204)
T ss_pred hCCCeEEEEeCCCCCh
Confidence 4568999999998654
No 71
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=37.04 E-value=79 Score=26.34 Aligned_cols=28 Identities=7% Similarity=0.158 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCC
Q 017484 177 TRLFKTIISKVVETYAPGAIVLQCGADS 204 (371)
Q Consensus 177 ~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~ 204 (371)
...+...|..++++++|++|+.-...|.
T Consensus 85 ~~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 85 WEELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3344456778889999999999988887
No 72
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=36.10 E-value=1.4e+02 Score=30.98 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHh
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK 229 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~ 229 (371)
..+...+|++++.- +.+.+||+||++ ||=.-.-.-|.+...++.+.+++
T Consensus 24 ~~D~~~~f~eil~~-a~~~~vD~VLia-------GDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 24 GDDSWNTFEEVLQI-AKEQDVDMILLG-------GDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhhHHHHHHHHHHH-HHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHH
Confidence 35677789988755 567899998763 45433344456666666666664
No 73
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=35.93 E-value=1.4e+02 Score=28.50 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEcc
Q 017484 177 TRLFKTIISKVVET-YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 239 (371)
Q Consensus 177 ~~~f~~vi~~~~~~-f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~g 239 (371)
...|+.+|..+.+. -+||+||+ +| |... .-+.+.|..+.+.+++++.|+.++.|
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvi-tG-Dl~~-------~~~~~~~~~~~~~l~~l~~Pv~~v~G 93 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVA-TG-DLAQ-------DHSSEAYQHFAEGIAPLRKPCVWLPG 93 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEE-CC-CCCC-------CCCHHHHHHHHHHHhhcCCcEEEeCC
Confidence 44566666665443 47898665 33 2221 12457788888888888999877754
No 74
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=35.89 E-value=90 Score=31.80 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCC
Q 017484 179 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYT 243 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~ 243 (371)
-+++.|..+.++|+|++|+|.+.. -...||.+.. +++.++ +.+.|++.+--.||.
T Consensus 74 ~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi~~----------v~~~~~~~~~~pvi~v~t~gf~ 130 (396)
T cd01979 74 ELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDLEG----------AAPRLSAEIGVPILVASASGLD 130 (396)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCHHHHHhcCHHH----------HHHHHhhcCCCcEEEeeCCCcc
Confidence 355567788889999987776554 5666664321 222222 236677766666665
No 75
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.66 E-value=1.5e+02 Score=30.69 Aligned_cols=69 Identities=10% Similarity=0.308 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHh-----cCCCeEEEccCCCCchhhHHHHHH
Q 017484 180 FKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKK-----FNLPLLVTGGGGYTKENVARCWTV 253 (371)
Q Consensus 180 f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~-----~~~pvl~l~gGGY~~~~~ar~~~~ 253 (371)
+++.|..+.++|+|++|+|.++. =...||-+ + .+++.++. .+.|++.+--.||.-. ....|..
T Consensus 69 L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdDi-------~---~v~~~~~~~~p~~~~~~vi~v~t~gf~g~-~~~G~~~ 137 (417)
T cd01966 69 LEEALDTLAERAKPKVIGLLSTGLTETRGEDI-------A---GALKQFRAEHPELADVPVVYVSTPDFEGS-LEDGWAA 137 (417)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcccccccCH-------H---HHHHHHHhhccccCCCeEEEecCCCCCCc-HHHHHHH
Confidence 44455567788999987776654 33444432 2 23333332 2789999999999863 4455555
Q ss_pred HHhhhh
Q 017484 254 ETGILL 259 (371)
Q Consensus 254 ~t~~ll 259 (371)
....++
T Consensus 138 a~~al~ 143 (417)
T cd01966 138 AVEAII 143 (417)
T ss_pred HHHHHH
Confidence 444444
No 76
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=35.20 E-value=1.2e+02 Score=30.28 Aligned_cols=66 Identities=14% Similarity=0.306 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCchhhHHHHHHHHh
Q 017484 180 FKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVETG 256 (371)
Q Consensus 180 f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~~~~ar~~~~~t~ 256 (371)
+...+..++++++|++|+|..+. ..+.||.+. .+++.++ ..+.|++.+--.||. ......|.....
T Consensus 68 l~~~i~~~~~~~~p~~i~v~~tc~~~liGdDi~----------~v~~~~~~~~~~~vv~~~~~gf~-~~~~~G~~~a~~ 135 (399)
T cd00316 68 LLEAIINELKRYKPKVIFVYTTCTTELIGDDIE----------AVAKEASKEIGIPVVPASTPGFR-GSQSAGYDAAVK 135 (399)
T ss_pred HHHHHHHHHHHcCCCEEEEecCchhhhhccCHH----------HHHHHHHHhhCCceEEeeCCCCc-ccHHHHHHHHHH
Confidence 33344566788999987776654 556665432 2344443 358899999999998 444444444333
No 77
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=35.08 E-value=85 Score=32.22 Aligned_cols=31 Identities=10% Similarity=0.204 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCc
Q 017484 179 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDR 209 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDp 209 (371)
-+++.|..+.+.|+|++|+|.+.. -...||.
T Consensus 71 ~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDD 102 (407)
T TIGR01279 71 ELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMD 102 (407)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCchHHHHHhh
Confidence 456667778889999998887664 5555554
No 78
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=34.81 E-value=1.5e+02 Score=27.19 Aligned_cols=61 Identities=10% Similarity=0.206 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 173 DTSFTRLFKTIISKVVET-YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~-f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
+......|+.++..+.+. -+||+||+ +| |.... -+.+.|..+.+.++.+++|++++. |-..
T Consensus 20 ~~~~~~~l~~~~~~i~~~~~~~d~vi~-~G-Dl~~~-------~~~~~~~~~~~~l~~~~~p~~~v~-GNHD 81 (240)
T cd07402 20 GVDTAASLEAVLAHINALHPRPDLVLV-TG-DLTDD-------GSPESYERLRELLAALPIPVYLLP-GNHD 81 (240)
T ss_pred CcCHHHHHHHHHHHHHhcCCCCCEEEE-Cc-cCCCC-------CCHHHHHHHHHHHhhcCCCEEEeC-CCCC
Confidence 345566677777654443 38897654 33 32221 134566777788888899987764 4444
No 79
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=34.40 E-value=60 Score=32.13 Aligned_cols=64 Identities=14% Similarity=0.253 Sum_probs=48.5
Q ss_pred HHHHHHhcCCCEEEEecCC---CCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEE-------ccC--CCCchhh
Q 017484 184 ISKVVETYAPGAIVLQCGA---DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT-------GGG--GYTKENV 247 (371)
Q Consensus 184 i~~~~~~f~Pd~Ivvq~G~---D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l-------~gG--GY~~~~~ 247 (371)
+.+++.+.+||+||-.+.+ |..+.+|.-.|.+...|=..+.+..++.+.+++-+ |.+ .|.....
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~D~ 117 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETDT 117 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCCCC
Confidence 4466677899999999986 88888887788888888888888888888887543 444 3876543
No 80
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=34.35 E-value=1.1e+02 Score=31.55 Aligned_cols=66 Identities=12% Similarity=0.215 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCcCcceecCHHHHHHHHHHHHhc-----CCCeEEEccCCCCchhhHHHHH
Q 017484 179 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVKKF-----NLPLLVTGGGGYTKENVARCWT 252 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G-~D~~~gDplg~~~Lt~~g~~~~~~~l~~~-----~~pvl~l~gGGY~~~~~ar~~~ 252 (371)
-+++.|..+.++|+|++|+|..+ .....||.+. .+++.++.. +.|++.+--.||.- +....|.
T Consensus 72 ~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdDi~----------~v~~~~~~~~~~~~~~~vi~v~tpgf~g-s~~~G~~ 140 (435)
T cd01974 72 NLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDDLN----------AFIKNAKNKGSIPADFPVPFANTPSFVG-SHITGYD 140 (435)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHhhhhccHH----------HHHHHHHHhccCCCCCeEEEecCCCCcc-CHHHHHH
Confidence 45556667788999998666554 4666666432 133333321 56777777677764 3334443
Q ss_pred HHH
Q 017484 253 VET 255 (371)
Q Consensus 253 ~~t 255 (371)
...
T Consensus 141 ~a~ 143 (435)
T cd01974 141 NMV 143 (435)
T ss_pred HHH
Confidence 333
No 81
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=34.07 E-value=1.4e+02 Score=27.36 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcce
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCF 213 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~ 213 (371)
|..-...+...+...+....-++||+.-|.|-..||-||-+
T Consensus 5 ~~~a~~~l~~~L~~~~~~~~~~iv~lCIGTDRstGDsLGPL 45 (163)
T PF06866_consen 5 DKNAPEKLANFLYSLIPKHNREIVFLCIGTDRSTGDSLGPL 45 (163)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEEECCCCCccccccch
Confidence 44444445555555555557789999999999999988864
No 82
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=33.72 E-value=1.8e+02 Score=26.57 Aligned_cols=88 Identities=28% Similarity=0.383 Sum_probs=52.8
Q ss_pred cEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHHHH
Q 017484 107 RVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISK 186 (371)
Q Consensus 107 RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi~~ 186 (371)
|+|.+||-+.-..|-.++ ..+.|+.||+.... | ....+. ..+.+..+.+..|..
T Consensus 4 ~~l~fDIEt~~~~gfp~~--~~d~Ii~Is~~~~~-------g----------~~~~~~---~~~~~E~~lL~~F~~---- 57 (188)
T cd05781 4 KTLAFDIEVYSKYGTPNP--RRDPIIVISLATSN-------G----------DVEFIL---AEGLDDRKIIREFVK---- 57 (188)
T ss_pred eEEEEEEEecCCCCCCCC--CCCCEEEEEEEeCC-------C----------CEEEEE---ecCCCHHHHHHHHHH----
Confidence 899999999855564333 34799999986421 1 001111 234566677777764
Q ss_pred HHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCe
Q 017484 187 VVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPL 234 (371)
Q Consensus 187 ~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pv 234 (371)
.+++++||+|+ |+.+..-| ..-+.+.++.+++++
T Consensus 58 ~i~~~dPd~i~---gyN~~~FD-----------lpyl~~Ra~~~gi~~ 91 (188)
T cd05781 58 YVKEYDPDIIV---GYNSNAFD-----------WPYLVERARVLGVKL 91 (188)
T ss_pred HHHHcCCCEEE---ecCCCcCc-----------HHHHHHHHHHhCCCc
Confidence 45678999875 66555544 122555556666653
No 83
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=33.53 E-value=1.6e+02 Score=30.20 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEcc-CCC
Q 017484 179 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG-GGY 242 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~g-GGY 242 (371)
.+++.|..+.+.|+|++|+|.++. -...||-+.. +++.. ..+.|++.+=- ||+
T Consensus 62 KL~eaI~ea~e~y~P~lI~VvTTCvseIIGDDIea----------VvkE~-~~giPVI~V~t~GGf 116 (352)
T TIGR03282 62 KLVKVIRYAEEKFKPELIGVVGTCASMIIGEDLKE----------AVDEA-DVDAEVIAVEVHAGF 116 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCchhhccCCHHH----------HHHHh-CCCCCEEEEECCCCC
Confidence 455566778899999988777664 5566664321 22222 35789999954 777
No 84
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=33.37 E-value=2e+02 Score=30.18 Aligned_cols=69 Identities=9% Similarity=0.159 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhc-CCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH--------hcCCCeEEEccCCCCchhhHH
Q 017484 180 FKTIISKVVETY-APGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK--------KFNLPLLVTGGGGYTKENVAR 249 (371)
Q Consensus 180 f~~vi~~~~~~f-~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~--------~~~~pvl~l~gGGY~~~~~ar 249 (371)
+++.|..+.++| +|++|+|.++. =...||.+.. +++.++ +.+.|++.+--+||.- +...
T Consensus 74 L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi~~----------vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G-s~~~ 142 (454)
T cd01973 74 VEEGVLVLARRYPDLRVIPIITTCSTEIIGDDIEG----------VIRKLNEALKEEFPDREVHLIPVHTPSFKG-SMVT 142 (454)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHhhhccCHHH----------HHHHHHhhhhhccCCCCCeEEEeeCCCcCC-CHHH
Confidence 445566778889 59987776664 5556664322 233222 1268999999999986 4445
Q ss_pred HHHHHHhhhh
Q 017484 250 CWTVETGILL 259 (371)
Q Consensus 250 ~~~~~t~~ll 259 (371)
.|...+..++
T Consensus 143 G~~~a~~ali 152 (454)
T cd01973 143 GYDEAVRSVV 152 (454)
T ss_pred HHHHHHHHHH
Confidence 5544444444
No 85
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.15 E-value=49 Score=30.95 Aligned_cols=64 Identities=23% Similarity=0.456 Sum_probs=43.3
Q ss_pred CCCCCCCCCcccCC-CCcceEEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCC
Q 017484 143 FFPGTGDVKEIGER-EGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGD 208 (371)
Q Consensus 143 ffPgtG~~~~~G~~-~G~~~~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gD 208 (371)
+=|||-++--.|.. .|..| +.|-|-.--+.++-+++++.++ ..+..|.|+.+|+.+|+ |.+.--
T Consensus 64 YKPGT~slAalGaav~GaDY-iKVGLYg~kn~~eA~e~m~~vv-rAVkd~d~~k~VVAaGYaDa~Rvg 129 (235)
T COG1891 64 YKPGTASLAALGAAVAGADY-IKVGLYGTKNEEEALEVMKNVV-RAVKDFDPSKKVVAAGYADAHRVG 129 (235)
T ss_pred CCCchHHHHHHHhHhhCCce-EEEeecccccHHHHHHHHHHHH-HHHhccCCCceEEeccccchhhcc
Confidence 56887665554433 33334 5666644445666677777776 55789999999999997 776643
No 86
>CHL00175 minD septum-site determining protein; Validated
Probab=32.05 E-value=50 Score=31.53 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=15.6
Q ss_pred HhCCcEEEEeccccCcccc
Q 017484 103 KYHARVLYIDIDVHHGDGV 121 (371)
Q Consensus 103 ~~~~RVliiD~DvHHGdGt 121 (371)
+...||++||.|...||-.
T Consensus 42 ~~g~~vlliD~D~~~~~l~ 60 (281)
T CHL00175 42 RLGYRVALIDADIGLRNLD 60 (281)
T ss_pred hCCCeEEEEeCCCCCCChh
Confidence 4568999999999988733
No 87
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=31.20 E-value=90 Score=25.74 Aligned_cols=46 Identities=17% Similarity=0.103 Sum_probs=26.4
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCC--CeEEEccCCC
Q 017484 186 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL--PLLVTGGGGY 242 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~--pvl~l~gGGY 242 (371)
..+.+.+|++|.+++-.... .....++++.+++.+. ..++++|-..
T Consensus 44 ~~~~~~~pdvV~iS~~~~~~-----------~~~~~~~i~~l~~~~~~~~~i~vGG~~~ 91 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTTH-----------MTLMKEVIEELKEAGLDDIPVLVGGAIV 91 (119)
T ss_pred HHHHHcCCCEEEEecccccc-----------HHHHHHHHHHHHHcCCCCCeEEEECCCC
Confidence 34567899999997752222 2333457777777643 3344433333
No 88
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=30.19 E-value=2.3e+02 Score=25.08 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecC-------CCCCCCCcCcc----eecCHHHHHHHHHHHHhcCCCeEEEccC
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQCG-------ADSLAGDRLGC----FNLSIDGHAECVRFVKKFNLPLLVTGGG 240 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G-------~D~~~gDplg~----~~Lt~~g~~~~~~~l~~~~~pvl~l~gG 240 (371)
+...+..+...+..+-..-...+||+... .|...--.... ..--...+.++++.+..+.+|++.+..|
T Consensus 24 ~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G 102 (195)
T cd06558 24 SLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG 102 (195)
T ss_pred CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 44666666667766555455567777543 33211000000 0001122334555666779999988763
No 89
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=29.61 E-value=1.6e+02 Score=28.60 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHh-cCCCeEEEccCCCCchhhHHHHHHHHhhhh
Q 017484 181 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK-FNLPLLVTGGGGYTKENVARCWTVETGILL 259 (371)
Q Consensus 181 ~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~-~~~pvl~l~gGGY~~~~~ar~~~~~t~~ll 259 (371)
++.+...++.+.+|.|+++--.=+..-| . +.++.+++ ...|++ .|+|=|.+|+.+.+.+.=++++
T Consensus 161 ~~~~~~a~~~~~aDaviVtG~~TG~~~~--------~----~~l~~vr~~~~~PVl--vGSGvt~~Ni~~~l~~ADG~IV 226 (254)
T PF03437_consen 161 EEAAKDAVERGGADAVIVTGKATGEPPD--------P----EKLKRVREAVPVPVL--VGSGVTPENIAEYLSYADGAIV 226 (254)
T ss_pred HHHHHHHHHhcCCCEEEECCcccCCCCC--------H----HHHHHHHhcCCCCEE--EecCCCHHHHHHHHHhCCEEEE
Confidence 3445566788999999876332222222 1 13344444 345655 6999999999998887777777
Q ss_pred CCC
Q 017484 260 DTE 262 (371)
Q Consensus 260 g~~ 262 (371)
|.-
T Consensus 227 GS~ 229 (254)
T PF03437_consen 227 GSY 229 (254)
T ss_pred eee
Confidence 754
No 90
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=29.59 E-value=1.8e+02 Score=29.62 Aligned_cols=56 Identities=21% Similarity=0.453 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCc
Q 017484 179 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTK 244 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G-~D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~ 244 (371)
.+.+.|..+.++|+|++|+|... ...+.||.+. .+++.++ +.+.|++.+--.||.-
T Consensus 73 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~----------~v~~~~~~~~~~~vi~v~t~gf~g 130 (410)
T cd01968 73 KLYKAILEIIERYHPKAVFVYSTCVVALIGDDID----------AVCKTASEKFGIPVIPVHSPGFVG 130 (410)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccCHH----------HHHHHHHHhhCCCEEEEECCCccc
Confidence 45556667788899998766544 3566666432 2333343 3478888888888754
No 91
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=29.16 E-value=1.6e+02 Score=30.48 Aligned_cols=31 Identities=3% Similarity=0.103 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhc-CCCEEEEecCC-CCCCCCc
Q 017484 179 LFKTIISKVVETY-APGAIVLQCGA-DSLAGDR 209 (371)
Q Consensus 179 ~f~~vi~~~~~~f-~Pd~Ivvq~G~-D~~~gDp 209 (371)
.+++.|..+++++ +|++|+|.++. -...||.
T Consensus 83 ~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDD 115 (427)
T PRK02842 83 ELDRVVEELIKRRPNISVLFLVGSCPSEVIKLD 115 (427)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCChHHhhcCC
Confidence 4455555655566 89998887765 5555554
No 92
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=28.70 E-value=1.4e+02 Score=27.74 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCcCcceec--C-HHHHHHHHHHHHhcCCCeEEEccCCCCch
Q 017484 183 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNL--S-IDGHAECVRFVKKFNLPLLVTGGGGYTKE 245 (371)
Q Consensus 183 vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~L--t-~~g~~~~~~~l~~~~~pvl~l~gGGY~~~ 245 (371)
.+.+.+.+++.|++++-.=-=.-..|-+-++.- + -..+.+|.++|.+++.|.+.+-+-||-.+
T Consensus 105 ~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~~v~i~~~~y~eR 170 (187)
T COG3172 105 FLQALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNIPFVVIEGEDYLER 170 (187)
T ss_pred hHHHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCCcEEEEcCCCHHHH
Confidence 456778899999988866543333343222211 2 23456688999999999998866699754
No 93
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=28.52 E-value=44 Score=29.40 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=12.5
Q ss_pred CcEEEEeccccCcc
Q 017484 106 ARVLYIDIDVHHGD 119 (371)
Q Consensus 106 ~RVliiD~DvHHGd 119 (371)
+||++||.|.+.++
T Consensus 25 ~~vlliD~D~~~~~ 38 (179)
T cd03110 25 KNVVLADCDVDAPN 38 (179)
T ss_pred hCcEEEECCCCCCc
Confidence 69999999999866
No 94
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=28.30 E-value=3.3e+02 Score=24.68 Aligned_cols=71 Identities=11% Similarity=0.166 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHH
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWT 252 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~ 252 (371)
|.+=+..--..|...++ -.||++|| .+.|.....=.|+...+......++|||+.....|- ..|.
T Consensus 75 D~~~La~A~~~l~~al~-~~~DLliv---------NkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l-----~~W~ 139 (159)
T PF10649_consen 75 DPGALAEASAALRRALA-EGADLLIV---------NKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNL-----EAWR 139 (159)
T ss_pred CHHHHHHHHHHHHHHHh-cCCCEEEE---------cccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHH-----HHHH
Confidence 44444433334545444 36898887 477777777777877777777789999998766554 6688
Q ss_pred HHHhhh
Q 017484 253 VETGIL 258 (371)
Q Consensus 253 ~~t~~l 258 (371)
..|.-+
T Consensus 140 ~Fagg~ 145 (159)
T PF10649_consen 140 AFAGGL 145 (159)
T ss_pred HhcCCc
Confidence 877663
No 95
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=28.16 E-value=69 Score=26.17 Aligned_cols=15 Identities=47% Similarity=0.879 Sum_probs=14.0
Q ss_pred CCcEEEEeccccCcc
Q 017484 105 HARVLYIDIDVHHGD 119 (371)
Q Consensus 105 ~~RVliiD~DvHHGd 119 (371)
..+|+++|.|.++++
T Consensus 29 ~~~~~l~d~d~~~~~ 43 (106)
T cd03111 29 GRRVLLVDLDLQFGD 43 (106)
T ss_pred CCcEEEEECCCCCCC
Confidence 789999999999987
No 96
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.15 E-value=1.4e+02 Score=31.42 Aligned_cols=45 Identities=13% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCC
Q 017484 186 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 242 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY 242 (371)
..+.+++||+|.+++ +..+...-.++++.+|+....+.+++||..
T Consensus 57 ~~l~~~~pdvVgis~------------~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h 101 (497)
T TIGR02026 57 ERLRAHCPDLVLITA------------ITPAIYIACETLKFARERLPNAIIVLGGIH 101 (497)
T ss_pred HHHHhcCcCEEEEec------------CcccHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 456678999999874 112333344566777776434444445543
No 97
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=28.11 E-value=1.7e+02 Score=26.89 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=29.2
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCC--eEEEccC
Q 017484 186 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLP--LLVTGGG 240 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~p--vl~l~gG 240 (371)
..+++.+||+|.+|+-.... .....++++.+++.+.+ +.++.||
T Consensus 129 ~~~~~~~pd~v~lS~~~~~~-----------~~~~~~~i~~l~~~~~~~~v~i~vGG 174 (197)
T TIGR02370 129 EKVKKEKPLMLTGSALMTTT-----------MYGQKDINDKLKEEGYRDSVKFMVGG 174 (197)
T ss_pred HHHHHcCCCEEEEccccccC-----------HHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 44678999999999854333 44567788888887543 4444444
No 98
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=28.02 E-value=19 Score=32.51 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=30.5
Q ss_pred cCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCC
Q 017484 191 YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGG 241 (371)
Q Consensus 191 f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGG 241 (371)
-++++||+ |-+|.|.+...+|.+.+..+...+.|+|.++--.
T Consensus 94 ~~~~livi---------DEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 94 SSSDLIVI---------DEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HCCHEEEE------------STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred CCCCEEEE---------eccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 57888887 9999999999999998888887788888875444
No 99
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=27.74 E-value=1.8e+02 Score=30.64 Aligned_cols=56 Identities=23% Similarity=0.466 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCc
Q 017484 179 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTK 244 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G-~D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~ 244 (371)
-+.+.|..+.++|+|++|+|... ...+.||-+. .+++.++ +.++|++.+--.||.-
T Consensus 106 kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~----------~v~~~~~~~~~~pvi~v~t~Gf~g 163 (475)
T PRK14478 106 KLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDID----------AVCKRAAEKFGIPVIPVNSPGFVG 163 (475)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHH----------HHHHHHHHhhCCCEEEEECCCccc
Confidence 34445556777899998766554 3666666432 2333333 3478888888777764
No 100
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.56 E-value=1.8e+02 Score=23.62 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHH
Q 017484 96 LGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTS 175 (371)
Q Consensus 96 iai~~ll~~~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~ 175 (371)
..+..|++..-.|-++|.+++..+-++.+-...++++.+|.+.. ..
T Consensus 19 ~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~----------------------------------~~ 64 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMT----------------------------------PN 64 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSS----------------------------------TH
T ss_pred HHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCc----------------------------------Cc
Confidence 33445566567899999999887777777777899999987411 11
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHh-cCCCeEEEccCCCCch
Q 017484 176 FTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKK-FNLPLLVTGGGGYTKE 245 (371)
Q Consensus 176 y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~-~~~pvl~l~gGGY~~~ 245 (371)
+.. ...++ ..+++..|+++++.-|.-.... .. +.++. .+.-.++.++|-++..
T Consensus 65 ~~~-~~~l~-~~~k~~~p~~~iv~GG~~~t~~------------~~---~~l~~~~~~D~vv~GegE~~~~ 118 (121)
T PF02310_consen 65 LPE-AKRLA-RAIKERNPNIPIVVGGPHATAD------------PE---EILREYPGIDYVVRGEGEEAFP 118 (121)
T ss_dssp HHH-HHHHH-HHHHTTCTTSEEEEEESSSGHH------------HH---HHHHHHHTSEEEEEETTSSHHH
T ss_pred HHH-HHHHH-HHHHhcCCCCEEEEECCchhcC------------hH---HHhccCcCcceecCCChHHhhc
Confidence 222 23333 3378899999888877332110 11 12322 4667788888876643
No 101
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=27.25 E-value=2.2e+02 Score=27.81 Aligned_cols=120 Identities=13% Similarity=0.126 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHh
Q 017484 177 TRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETG 256 (371)
Q Consensus 177 ~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~ 256 (371)
..+++..|..+.++|++|+||+.+ ..--|++.||.+-+ +.|.+.++-++.+|--=|....+.......-.
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNg------ENaa~G~Git~~~~----~~L~~~GvDviT~GNH~wdkkei~~~i~~~~~ 81 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANG------ENAAGGFGITPKIA----EELFKAGVDVITMGNHIWDKKEIFDFIDKEPR 81 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-------TTTTTTSS--HHHH----HHHHHHT-SEEE--TTTTSSTTHHHHHHH-SS
T ss_pred HHHHHHHHHHHHhhcCCCEEEECC------cccCCCCCCCHHHH----HHHHhcCCCEEecCcccccCcHHHHHHhcCCC
Confidence 456777888889999999998764 23356788988755 44567788888877666776554443222222
Q ss_pred hhhCCCCCCCCCCchhhhhhCCCCCCCCC----CCCCCC-CChHHHHHHHHHHHH
Q 017484 257 ILLDTELPNEIPENEYIKYFAPECSLRIP----NGHIEN-LNSKSYLSTIKMQVL 306 (371)
Q Consensus 257 ~llg~~~~~~iP~~~~~~~~~p~~~l~~~----~~~~~n-~n~~~~l~~i~~~i~ 306 (371)
+|-=...|...|-..|.-+-..+.++-+- ..-|+. .|.-..++++.+++.
T Consensus 82 ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l~ 136 (253)
T PF13277_consen 82 ILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEELK 136 (253)
T ss_dssp EE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH--
T ss_pred cEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhcc
Confidence 22222234444544443333344444331 112322 255677777766653
No 102
>PRK10818 cell division inhibitor MinD; Provisional
Probab=27.23 E-value=70 Score=30.20 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.3
Q ss_pred HhCCcEEEEeccccCcc
Q 017484 103 KYHARVLYIDIDVHHGD 119 (371)
Q Consensus 103 ~~~~RVliiD~DvHHGd 119 (371)
++..||++||+|.+.||
T Consensus 29 ~~g~~vllvD~D~~~~~ 45 (270)
T PRK10818 29 QKGKKTVVIDFDIGLRN 45 (270)
T ss_pred HCCCeEEEEECCCCCCC
Confidence 44689999999998776
No 103
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=27.17 E-value=1.9e+02 Score=23.32 Aligned_cols=55 Identities=22% Similarity=0.382 Sum_probs=32.4
Q ss_pred ecCCCCCChHHHHHHHHHHHHHHHHhcCCC-EEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEcc
Q 017484 165 VPLKDGIDDTSFTRLFKTIISKVVETYAPG-AIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 239 (371)
Q Consensus 165 vPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd-~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~g 239 (371)
|-+|+|++|+. +.+++.+ ..+ +|+|.+-.+ ++...-.+.+.++++.++|++-+.|
T Consensus 6 iD~PPGTgD~~-l~~~~~~--------~~~g~ivVTTPq~-----------la~~dv~r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 6 IDLPPGTGDEH-LTLMQYL--------PIDGAIVVTTPQE-----------LALADVRRAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp EE--SCSSSHH-HHHHHHH----------SEEEEEE-CCC-------------HHHHHHHHHHHHCTT-EEEEEEE
T ss_pred EeCCCCCCcHH-HHHHHhC--------CCCeEEEEeCCHH-----------HHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 55799999865 4444422 244 677766533 4555567788899999999997755
No 104
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=27.10 E-value=58 Score=28.13 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=15.5
Q ss_pred HHHHhCCcEEEEeccccCcc
Q 017484 100 ELLKYHARVLYIDIDVHHGD 119 (371)
Q Consensus 100 ~ll~~~~RVliiD~DvHHGd 119 (371)
.|.++..||++||.|...|+
T Consensus 23 ~l~~~g~~vllvD~D~~~~~ 42 (179)
T cd02036 23 ALAQLGYKVVLIDADLGLRN 42 (179)
T ss_pred HHHhCCCeEEEEeCCCCCCC
Confidence 33456789999999998765
No 105
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=27.09 E-value=1.6e+02 Score=28.64 Aligned_cols=95 Identities=20% Similarity=0.246 Sum_probs=48.5
Q ss_pred HHHHhCCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeec-CCCCCChHHHHH
Q 017484 100 ELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVP-LKDGIDDTSFTR 178 (371)
Q Consensus 100 ~ll~~~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvP-L~~G~~D~~y~~ 178 (371)
-+....+||++||.|+=-|| ....|--++.-.+ +|.+ .=+.-..+|+-..... .|+- ||.+.+-+++..
T Consensus 27 ~~~~~~k~V~~iDaD~g~~n-L~~~~g~~~~~~~--l~dv----L~~~~~~~Di~~~~~~---~gl~vipg~~~~~~~~~ 96 (262)
T COG0455 27 LAALGGKVVLLIDADLGLGN-LSLLLGVESKPTT--LHDV----LAGEASIEDIIYETPQ---DGLYVLPGGSGLEDLAK 96 (262)
T ss_pred HHhhCCCeEEEEecCCCCCc-HHHHhCCCCCccc--HHHH----HhCCCCHhHeeeecCc---CCEEEeeCCCChHHHhh
Confidence 34445688899999997776 1122222222222 3322 1112223332211110 1222 467777777765
Q ss_pred HH----HHHHHHHHHhcCCCEEEEecCCCCCC
Q 017484 179 LF----KTIISKVVETYAPGAIVLQCGADSLA 206 (371)
Q Consensus 179 ~f----~~vi~~~~~~f~Pd~Ivvq~G~D~~~ 206 (371)
+. +.++..+.+.+ |+||+=||+....
T Consensus 97 ~~~~~~~~~~~~l~~~~--D~iliD~~aGl~~ 126 (262)
T COG0455 97 LDPEDLEDVIKELEELY--DYILIDTGAGLSR 126 (262)
T ss_pred cCHHHHHHHHHHHHhcC--CEEEEeCCCCccH
Confidence 43 34555554444 9999999965443
No 106
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=26.89 E-value=2.9e+02 Score=26.04 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEE-------ecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEcc
Q 017484 171 IDDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 239 (371)
Q Consensus 171 ~~D~~y~~~f~~vi~~~~~~f~Pd~Ivv-------q~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~g 239 (371)
.=+.+.+..+...+..+.+. ...+||+ ++|.|.-... ..-.+ .....++++.+..+.+|++....
T Consensus 23 al~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~--~~~~~-~~~~~~~~~~l~~~~kP~Iaav~ 94 (243)
T PRK07854 23 ALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDV--YADDF-PDALIEMLHAIDAAPVPVIAAIN 94 (243)
T ss_pred CCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccch--hHHHH-HHHHHHHHHHHHhCCCCEEEEec
Confidence 33555555566666664432 4555655 3444443210 00000 11123355566677899987765
No 107
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=26.85 E-value=3.3e+02 Score=31.00 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=36.5
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCC
Q 017484 163 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 242 (371)
Q Consensus 163 vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY 242 (371)
+-+|++.+.. + ..++..++--+|+|.- ..||++|-|+- -++.|+..++++..+.--++
T Consensus 196 l~vPl~~~~~---~--------~Dl~~~l~lPvILV~~-------~~LG~INhtll----t~eaL~~rGi~v~gii~~~~ 253 (817)
T PLN02974 196 VASPGPSGTL---Q--------CDLYRPLRLPAILVGD-------GRLGGISATLA----AYESLLLRGYDVVAVVIEDH 253 (817)
T ss_pred ccccCCCCCC---H--------HHHHHHhCCCEEEEEC-------CCCCHHHHHHH----HHHHHHHCCCCEEEEEEeCC
Confidence 6688877642 2 2334445656666653 47999988764 34667777877632222234
Q ss_pred CchhhH
Q 017484 243 TKENVA 248 (371)
Q Consensus 243 ~~~~~a 248 (371)
...|..
T Consensus 254 ~~~N~~ 259 (817)
T PLN02974 254 GLSNEK 259 (817)
T ss_pred ccchHH
Confidence 444433
No 108
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=26.74 E-value=3.1e+02 Score=27.26 Aligned_cols=101 Identities=22% Similarity=0.303 Sum_probs=57.8
Q ss_pred HHHHHHHHhC-C-cEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCCh
Q 017484 96 LGILELLKYH-A-RVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDD 173 (371)
Q Consensus 96 iai~~ll~~~-~-RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D 173 (371)
.++.++.+.. + ||++|+-|-=.|.|..++|... +...| ..-.+..+..++..|
T Consensus 137 ~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~-------l~~~G------------------~~~~~~~~~~~~~~~ 191 (366)
T COG0683 137 AAADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAA-------LKALG------------------GEVVVEEVYAPGDTD 191 (366)
T ss_pred HHHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHH-------HHhCC------------------CeEEEEEeeCCCCCC
Confidence 3445666554 4 8999999999999999998641 11111 101122333344334
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
|..++.+ +...+||+|++..-.+ ..+ .+++.+++.+..-.++++++-.
T Consensus 192 ------~~~~v~~-i~~~~~d~v~~~~~~~-----~~~----------~~~r~~~~~G~~~~~~~~~~~~ 239 (366)
T COG0683 192 ------FSALVAK-IKAAGPDAVLVGGYGP-----DAA----------LFLRQAREQGLKAKLIGGDGAG 239 (366)
T ss_pred ------hHHHHHH-HHhcCCCEEEECCCCc-----cch----------HHHHHHHHcCCCCccccccccC
Confidence 6666656 4568999666544322 111 2667777776655444444444
No 109
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=26.53 E-value=62 Score=31.67 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhh
Q 017484 184 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENV 247 (371)
Q Consensus 184 i~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ 247 (371)
|...+.++..++.+|+.| ||..+.+-.+-+.++.+.+ .=++++||.+...|+
T Consensus 105 i~~~~~~~~~evtiva~G-------PLTNlA~al~~~P~~~~~i-----k~iviMGG~~~~GN~ 156 (302)
T cd02651 105 IIDTLRASPEPITLVATG-------PLTNIALLLRKYPELAERI-----KEIVLMGGALGRGNI 156 (302)
T ss_pred HHHHHHhCCCCEEEEEcC-------chHHHHHHHHHChhhHhhc-----CEEEEecCCcCCCCC
Confidence 335566777899999999 8776555433333333333 346777777754444
No 110
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.30 E-value=1.6e+02 Score=26.30 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=23.1
Q ss_pred hcCCCEEEEecCC-CCCCCCcCcceecCHH----HHHHHHHHHHhc
Q 017484 190 TYAPGAIVLQCGA-DSLAGDRLGCFNLSID----GHAECVRFVKKF 230 (371)
Q Consensus 190 ~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~----g~~~~~~~l~~~ 230 (371)
..+||+|+|..|. |.... ++.+.+ .+.++++.+++.
T Consensus 77 ~~~pd~vii~lGtND~~~~-----~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKSY-----FNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCCEEEEeccccccccc-----cCCCHHHHHHHHHHHHHHHHhc
Confidence 3799999999999 65432 223443 444566666664
No 111
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=26.19 E-value=4.7e+02 Score=27.29 Aligned_cols=85 Identities=18% Similarity=0.140 Sum_probs=43.1
Q ss_pred HHHHHHHhCCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCC--CcccCCCCcceEEeecCCCCCChH
Q 017484 97 GILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDV--KEIGEREGKFYAINVPLKDGIDDT 174 (371)
Q Consensus 97 ai~~ll~~~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~--~~~G~~~G~~~~vNvPL~~G~~D~ 174 (371)
-+..++.+..||.|||.|| |-.+++-.. +||+ .||.+-.. ++...- .+|=+=.--|. -.-.
T Consensus 93 LaN~~l~rG~~v~iiDaDv----GQ~ei~pPg----~ISL------~~~~s~~~~L~~l~~~--~~~FvG~isP~-~~~~ 155 (398)
T COG1341 93 LANKLLARGRKVAIIDADV----GQSEIGPPG----FISL------AFPESPVISLSELEPF--TLYFVGSISPQ-GFPG 155 (398)
T ss_pred HHHHHhhcCceEEEEeCCC----CCcccCCCc----eEEe------ecccCCCCCHHHcCcc--ceEEEeccCCC-CChH
Confidence 3445666678899999999 556655322 3343 23332221 111111 11111111122 2355
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEec
Q 017484 175 SFTRLFKTIISKVVETYAPGAIVLQC 200 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~Pd~Ivvq~ 200 (371)
.|+.....++..+.+. +++|+|-+
T Consensus 156 ~~i~~v~rL~~~a~~~--~~~ilIdT 179 (398)
T COG1341 156 RYIAGVARLVDLAKKE--ADFILIDT 179 (398)
T ss_pred HHHHHHHHHHHHhhcc--CCEEEEcC
Confidence 7777777666554443 88887643
No 112
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=25.82 E-value=76 Score=28.04 Aligned_cols=25 Identities=20% Similarity=0.571 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEE
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVL 198 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivv 198 (371)
..+...+.+-+.+++++++||+||-
T Consensus 71 ~~~~~~~~~~l~~~l~~~~PD~IIs 95 (169)
T PF06925_consen 71 SALSRLFARRLIRLLREFQPDLIIS 95 (169)
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 3456666677888899999999874
No 113
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=25.81 E-value=2.6e+02 Score=28.26 Aligned_cols=78 Identities=9% Similarity=0.093 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHH---HHHHHHH-HHhcCCCeEEEccCCCCchhhH-HHHHHHHhh
Q 017484 183 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDG---HAECVRF-VKKFNLPLLVTGGGGYTKENVA-RCWTVETGI 257 (371)
Q Consensus 183 vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g---~~~~~~~-l~~~~~pvl~l~gGGY~~~~~a-r~~~~~t~~ 257 (371)
.+.|++++-+=-+|-|++..--...+-+|.++.|-.+ |..|++. |..+++.|.++--|.+....+. .-|......
T Consensus 148 ~~lpLlr~arGRvVnvsS~~GR~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f~T~l~~~~~~~~~~~~ 227 (322)
T KOG1610|consen 148 AFLPLLRRARGRVVNVSSVLGRVALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFFKTNLANPEKLEKRMKE 227 (322)
T ss_pred HHHHHHHhccCeEEEecccccCccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCccccccCChHHHHHHHHH
Confidence 4567777777789999988888888888999888654 5555553 6668999888866655443332 446666666
Q ss_pred hhC
Q 017484 258 LLD 260 (371)
Q Consensus 258 llg 260 (371)
+.+
T Consensus 228 ~w~ 230 (322)
T KOG1610|consen 228 IWE 230 (322)
T ss_pred HHh
Confidence 665
No 114
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.60 E-value=3e+02 Score=26.19 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCH---HHHHHHHHHHHhcC-CCeEEEcc
Q 017484 175 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI---DGHAECVRFVKKFN-LPLLVTGG 239 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~---~g~~~~~~~l~~~~-~pvl~l~g 239 (371)
+....|+.++ ..+.+.+||+||++ ||=.-..+-+. .-+.+.++.+++.+ +|++++.|
T Consensus 23 ~~~~~l~~l~-~~~~~~~~D~lli~-------GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~G 83 (253)
T TIGR00619 23 EQKAFLDDLL-EFAKAEQIDALLVA-------GDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISG 83 (253)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 3455677665 44566799998763 33222222222 22334445555555 78887754
No 115
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=25.35 E-value=2.5e+02 Score=24.47 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=30.0
Q ss_pred HHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCC-CeEEEccCCCC
Q 017484 188 VETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL-PLLVTGGGGYT 243 (371)
Q Consensus 188 ~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~-pvl~l~gGGY~ 243 (371)
+.+.+||+|.+|+ -+.-+.....++++.+++.+. .+.++.||+-.
T Consensus 46 a~~~~adiVglS~-----------L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~ 91 (128)
T cd02072 46 AIETDADAILVSS-----------LYGHGEIDCKGLREKCDEAGLKDILLYVGGNLV 91 (128)
T ss_pred HHHcCCCEEEEec-----------cccCCHHHHHHHHHHHHHCCCCCCeEEEECCCC
Confidence 4567999998875 122355666778888888765 45556666654
No 116
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=25.19 E-value=96 Score=30.02 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=28.8
Q ss_pred CCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 192 APGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 192 ~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
.+|+||+. -|.-+.++.|++.|+. ++++++++++.+.+..+| ||.
T Consensus 83 ~~Dliil~--Gd~Q~~~~~gqyel~~----~~Ld~a~e~g~~~IyTLG-Gy~ 127 (258)
T COG2047 83 ERDLIILV--GDTQATSSEGQYELTG----KILDIAKEFGARMIYTLG-GYG 127 (258)
T ss_pred CCcEEEEe--ccccccCcchhHHHHH----HHHHHHHHcCCcEEEEec-Ccc
Confidence 34676654 2445566777777754 366777888888777764 454
No 117
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=25.18 E-value=3.4e+02 Score=26.96 Aligned_cols=98 Identities=15% Similarity=0.277 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcC-------------------ccee----cCHHHHHHHHHHHH
Q 017484 172 DDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRL-------------------GCFN----LSIDGHAECVRFVK 228 (371)
Q Consensus 172 ~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDpl-------------------g~~~----Lt~~g~~~~~~~l~ 228 (371)
+-...-.+++.++....+ ...+++-+.-|+.++..+.+ |.-. .+.+.+.++.+.++
T Consensus 10 ~apG~Na~i~~vv~~a~~-~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~~~~~~~~~l~ 88 (301)
T TIGR02482 10 DAPGMNAAIRAVVRTAIY-HGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEEGRQKAVENLK 88 (301)
T ss_pred CcHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHHHHHHHHHHHH
Confidence 344555666666665543 46688888888888765421 1111 13456778999999
Q ss_pred hcCCCeEEEccCCCCchhhHHHHHHH-HhhhhC--CCCCCCCCCch
Q 017484 229 KFNLPLLVTGGGGYTKENVARCWTVE-TGILLD--TELPNEIPENE 271 (371)
Q Consensus 229 ~~~~pvl~l~gGGY~~~~~ar~~~~~-t~~llg--~~~~~~iP~~~ 271 (371)
++++-.|++.||-=+.+...+...+. +.+ +| ..+++++|..|
T Consensus 89 ~~~Id~Li~IGGdgs~~~a~~L~e~~~i~v-igiPkTIDNDl~~td 133 (301)
T TIGR02482 89 KLGIEGLVVIGGDGSYTGAQKLYEEGGIPV-IGLPGTIDNDIPGTD 133 (301)
T ss_pred HcCCCEEEEeCCchHHHHHHHHHHhhCCCE-EeecccccCCCcCcc
Confidence 99999999998887776665554321 211 22 22556666543
No 118
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=24.83 E-value=2.8e+02 Score=28.78 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEecCCC-CCCCCcCcceecCHHHHHHHHHHHHh-cCCCeEEEccCCCCchhhHHHHH
Q 017484 177 TRLFKTIISKVVETYAPGAIVLQCGAD-SLAGDRLGCFNLSIDGHAECVRFVKK-FNLPLLVTGGGGYTKENVARCWT 252 (371)
Q Consensus 177 ~~~f~~vi~~~~~~f~Pd~Ivvq~G~D-~~~gDplg~~~Lt~~g~~~~~~~l~~-~~~pvl~l~gGGY~~~~~ar~~~ 252 (371)
...+++.|..+.++++|++|+|.++.= ...||.+ + ..+++ .+.||+.+---||...+-...|.
T Consensus 72 ~~~L~~~i~~~~~~~~P~~I~V~tTC~se~IGdDi-------~------~~~~~~~~~pVi~v~tpgF~~~s~~~G~d 136 (422)
T TIGR02015 72 FEDVRCSVHKLADPASYDAIVVINLCVPTASGVPL-------E------LLPKRINGVRVLGIDVPGFGVPTHAEAKD 136 (422)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCcHHHhcCcH-------H------HHHHhcCCCCeEEEeCCCCCCchHHHHHH
Confidence 356677777888899999999988731 2223311 1 11222 47799999999995544333333
No 119
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.80 E-value=1.8e+02 Score=30.01 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCC-CEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCc
Q 017484 179 LFKTIISKVVETYAP-GAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTK 244 (371)
Q Consensus 179 ~f~~vi~~~~~~f~P-d~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~ 244 (371)
-+++.|..+.++|+| ++|+|.+.. ..+.||.+.. +++.++ +.+.||+.+--.||.-
T Consensus 85 kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdDi~~----------v~~~~~~~~~~pvi~v~t~gf~g 143 (421)
T cd01976 85 KLAKAIDEAYELFPLNKGISVQSECPVGLIGDDIEA----------VARKASKELGIPVVPVRCEGFRG 143 (421)
T ss_pred HHHHHHHHHHHhCCCccEEEEECCChHHHhccCHHH----------HHHHHHHhhCCCEEEEeCCCccC
Confidence 456777888999999 987766543 5666664322 333333 3488999998888864
No 120
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=24.66 E-value=83 Score=29.07 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=14.9
Q ss_pred HHHhCCcEEEEeccccCcc
Q 017484 101 LLKYHARVLYIDIDVHHGD 119 (371)
Q Consensus 101 ll~~~~RVliiD~DvHHGd 119 (371)
|.+...||++||.|...||
T Consensus 26 la~~g~~vlliD~D~~~~~ 44 (261)
T TIGR01968 26 LARLGKKVVLIDADIGLRN 44 (261)
T ss_pred HHHcCCeEEEEECCCCCCC
Confidence 3345789999999997665
No 121
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=24.62 E-value=1.4e+02 Score=23.35 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=13.7
Q ss_pred HHHhcCCCeEEEccCCCC
Q 017484 226 FVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 226 ~l~~~~~pvl~l~gGGY~ 243 (371)
.++..+.+=+.++.|||.
T Consensus 91 ~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 91 ILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp HHHHTTTSSEEEETTHHH
T ss_pred HHHHcCCCCEEEecChHH
Confidence 366677767788899986
No 122
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=24.48 E-value=5.4e+02 Score=25.86 Aligned_cols=117 Identities=14% Similarity=0.106 Sum_probs=58.1
Q ss_pred hcCCCEEEEecCC-CCCCCCcCcceecCHHHHHH----HHHHHHhcCCC-eEEEccCCCCchhhHHHHHHHHhhhhCCCC
Q 017484 190 TYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAE----CVRFVKKFNLP-LLVTGGGGYTKENVARCWTVETGILLDTEL 263 (371)
Q Consensus 190 ~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~----~~~~l~~~~~p-vl~l~gGGY~~~~~ar~~~~~t~~llg~~~ 263 (371)
.-.|.+|+|..|. |+..+..-..-.++++-|.+ .++.|++...| ..+++-|=-+.+ +. ...+.++--
T Consensus 120 ~~~P~lVtI~lGgND~C~g~~d~~~~tp~eefr~NL~~~L~~Lr~~lP~~s~ViLvgmpd~~---~L----~~~~~~r~h 192 (305)
T cd01826 120 TDKPALVIYSMIGNDVCNGPNDTINHTTPEEFYENVMEALKYLDTKLPNGSHVILVGLVDGR---IL----YDTLHNRLH 192 (305)
T ss_pred cCCCeEEEEEeccchhhcCCCccccCcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeccchh---hh----hhhhccccc
Confidence 3469999998777 88776321111377777654 55666665333 233333333322 22 333444322
Q ss_pred -----CCCCCCchhhhhhCCCCCCCCCC--CCCC-CCChHHHHHHHHHHHHHHhhcCCCCC
Q 017484 264 -----PNEIPENEYIKYFAPECSLRIPN--GHIE-NLNSKSYLSTIKMQVLENLRSIQHAP 316 (371)
Q Consensus 264 -----~~~iP~~~~~~~~~p~~~l~~~~--~~~~-n~n~~~~l~~i~~~i~~~l~~l~~ap 316 (371)
....-+.++|+|.. =|.++| .+|. |...+.+..+..+++...++.|...+
T Consensus 193 plg~~~~~vty~~~y~~ln---cl~~spC~gw~~~n~t~rn~t~~~a~~l~~~~~~ia~~~ 250 (305)
T cd01826 193 PIGQLNKDVTYPNLYDYLN---CLQVSPCWGWLNSNETLRNLTSERAAQLSNVLKRIAANE 250 (305)
T ss_pred cchhcccccchhhhhhhhc---ccccCCccccccccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 22345555666552 233433 2343 33334555555555555555554444
No 123
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=24.47 E-value=3.8e+02 Score=25.08 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCc
Q 017484 180 FKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 244 (371)
Q Consensus 180 f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~ 244 (371)
++.++..+-++....-+++.+.+=-.. -.+ .|.++-+.+.+.+.|+|+|+|=|+-+
T Consensus 90 le~a~~~I~~~~G~~P~~v~TsAr~~~------~~i---s~~~lr~~l~~~~~P~LllFGTGwGL 145 (185)
T PF09936_consen 90 LEEAIEDIEEEEGKRPLLVATSARKYP------NTI---SYAELRRMLEEEDRPVLLLFGTGWGL 145 (185)
T ss_dssp HHHHHHHHHHHHSS--EEEE--SS--S------S-B----HHHHHHHHHH--S-EEEEE--TT--
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcCCC------CCc---CHHHHHHHHhccCCeEEEEecCCCCC
Confidence 445555655555555566665543211 123 35566667777789999999977764
No 124
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=24.13 E-value=2.5e+02 Score=26.77 Aligned_cols=18 Identities=6% Similarity=0.110 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCCeEEEcc
Q 017484 222 ECVRFVKKFNLPLLVTGG 239 (371)
Q Consensus 222 ~~~~~l~~~~~pvl~l~g 239 (371)
.++..+..+.+|++...-
T Consensus 89 ~~~~~l~~~~kPvIaav~ 106 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVN 106 (261)
T ss_pred HHHHHHHhCCCCEEEEEc
Confidence 345556677899886543
No 125
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=23.96 E-value=4.4e+02 Score=26.53 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcC-------------------c--ceec--CHHHHHHHHHHHH
Q 017484 172 DDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRL-------------------G--CFNL--SIDGHAECVRFVK 228 (371)
Q Consensus 172 ~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDpl-------------------g--~~~L--t~~g~~~~~~~l~ 228 (371)
.-...-.++..++..+.+ ...+++-+.-|+.++..+.+ | ++.. +.+++.++++.++
T Consensus 11 ~apG~N~~i~~~v~~~~~-~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~~~~~~~~l~ 89 (338)
T cd00363 11 DAPGMNAAIRGVVRSAIA-EGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTIIGSARCKEFRTEEGRAKAAENLK 89 (338)
T ss_pred CchhHHHHHHHHHHHHHH-CCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeecccCCCCccCCHHHHHHHHHHHH
Confidence 344555667777766544 46788888889988876521 1 1223 4567888999999
Q ss_pred hcCCCeEEEccCCCCchhhHHHHHH
Q 017484 229 KFNLPLLVTGGGGYTKENVARCWTV 253 (371)
Q Consensus 229 ~~~~pvl~l~gGGY~~~~~ar~~~~ 253 (371)
+.++-.|++.||-=+...+.+...+
T Consensus 90 ~~~I~~Lv~IGGd~s~~~a~~L~e~ 114 (338)
T cd00363 90 KHGIDALVVIGGDGSYTGADLLTEE 114 (338)
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHH
Confidence 9999999998888776655554444
No 126
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=23.74 E-value=3.1e+02 Score=26.01 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEE-------ecCCCCCC---CCcCcceecCHHHHHHHHHHHHhcCCCeEEEccC
Q 017484 172 DDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLA---GDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGG 240 (371)
Q Consensus 172 ~D~~y~~~f~~vi~~~~~~f~Pd~Ivv-------q~G~D~~~---gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gG 240 (371)
-+.+++..+...+..+-..-..-+||+ ++|.|.-. .+.... + ......+++.+..+.+|++....|
T Consensus 26 l~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--~-~~~~~~~~~~l~~~~kPvIAav~G 101 (255)
T PRK09674 26 LNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAAT--L-NDPRPQLWQRLQAFNKPLIAAVNG 101 (255)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhh--H-HHHHHHHHHHHHhCCCCEEEEECC
Confidence 355666666667766544333345665 33333221 000000 0 112234555666778998876543
No 127
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=23.74 E-value=2.5e+02 Score=26.57 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCCeEEEccC
Q 017484 221 AECVRFVKKFNLPLLVTGGG 240 (371)
Q Consensus 221 ~~~~~~l~~~~~pvl~l~gG 240 (371)
..+...+..+.+|+|....|
T Consensus 88 ~~~~~~l~~~~kpvIAav~G 107 (260)
T PRK07511 88 HDWIRAIRAFPKPVIAAVEG 107 (260)
T ss_pred HHHHHHHHcCCCCEEEEECC
Confidence 34555566778999887654
No 128
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=23.72 E-value=2.4e+02 Score=22.83 Aligned_cols=14 Identities=7% Similarity=-0.026 Sum_probs=11.0
Q ss_pred HHhcCCCEEEEecC
Q 017484 188 VETYAPGAIVLQCG 201 (371)
Q Consensus 188 ~~~f~Pd~Ivvq~G 201 (371)
+.+.+||+|.+++-
T Consensus 46 i~~~~pdiV~iS~~ 59 (125)
T cd02065 46 AKEEDADVVGLSAL 59 (125)
T ss_pred HHHcCCCEEEEecc
Confidence 34589999999874
No 129
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=23.69 E-value=1.4e+02 Score=28.09 Aligned_cols=54 Identities=7% Similarity=0.082 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCEEEEecCCCC----CCCCcCcceecCHHHHHHHHHHHHhcCCC-eEEE
Q 017484 184 ISKVVETYAPGAIVLQCGADS----LAGDRLGCFNLSIDGHAECVRFVKKFNLP-LLVT 237 (371)
Q Consensus 184 i~~~~~~f~Pd~Ivvq~G~D~----~~gDplg~~~Lt~~g~~~~~~~l~~~~~p-vl~l 237 (371)
+..+++.++||+||-.|+.-. ...+|...+.....+-..+.+.+++.+.+ ++.+
T Consensus 41 l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~ 99 (306)
T PLN02725 41 VEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFL 99 (306)
T ss_pred HHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEe
Confidence 334456679999999998632 23455444555555666777888777764 4443
No 130
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=23.61 E-value=61 Score=26.01 Aligned_cols=52 Identities=12% Similarity=0.214 Sum_probs=40.8
Q ss_pred cCCCCCCCCcCc-ceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHH
Q 017484 200 CGADSLAGDRLG-CFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCW 251 (371)
Q Consensus 200 ~G~D~~~gDplg-~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~ 251 (371)
++-+.++|+.++ .+.+|....+++++.|+..+.+|..+-+=||.+......+
T Consensus 15 ~~~~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~~~ll 67 (79)
T COG1654 15 LTGNFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQLPDLL 67 (79)
T ss_pred cCCCcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCCCceeccCccccC
Confidence 444556676666 3688888999999999999999999988899976655543
No 131
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=23.58 E-value=76 Score=30.16 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=13.2
Q ss_pred hCCcEEEEeccccCcc
Q 017484 104 YHARVLYIDIDVHHGD 119 (371)
Q Consensus 104 ~~~RVliiD~DvHHGd 119 (371)
...|||+||+|.+...
T Consensus 30 ~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 30 HDKKVFIHGCDPKADS 45 (275)
T ss_pred cCCeEEEeccCcCcCh
Confidence 4789999999998643
No 132
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=23.44 E-value=78 Score=30.89 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=15.1
Q ss_pred HHHhCCcEEEEeccccCcc
Q 017484 101 LLKYHARVLYIDIDVHHGD 119 (371)
Q Consensus 101 ll~~~~RVliiD~DvHHGd 119 (371)
|.+..+|||+||.|.+..+
T Consensus 28 la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 28 LVEMGQKILIVGCDPKADS 46 (295)
T ss_pred HHHCCCeEEEEeccccccc
Confidence 4456789999999998655
No 133
>PRK00942 acetylglutamate kinase; Provisional
Probab=23.16 E-value=3.1e+02 Score=26.44 Aligned_cols=62 Identities=16% Similarity=0.388 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 175 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
.....|++.. |-+..|+=..+|+-.|-.++..... .+...+.+..+++.+.+++++-|||-.
T Consensus 6 ~~~~~~r~~~-~yi~~~~~~~iViK~GGs~l~~~~~------~~~l~~~i~~l~~~g~~vVlVhGgg~~ 67 (283)
T PRK00942 6 EKAEVLSEAL-PYIQRFMGKTIVIKYGGNAMTDEEL------KEAFARDIVLLKQVGINPVVVHGGGPQ 67 (283)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcch------HHHHHHHHHHHHHCCCCEEEEeCChHH
Confidence 5667788765 7788999899999999888865421 233444555666777777777777644
No 134
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=23.07 E-value=83 Score=29.94 Aligned_cols=17 Identities=12% Similarity=0.264 Sum_probs=14.2
Q ss_pred HhCCcEEEEeccccCcc
Q 017484 103 KYHARVLYIDIDVHHGD 119 (371)
Q Consensus 103 ~~~~RVliiD~DvHHGd 119 (371)
+...||++||.|.+..+
T Consensus 27 ~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 27 TMGNKILLVGCDPKADS 43 (273)
T ss_pred hhCCCeEEEeccccccc
Confidence 45789999999998655
No 135
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=23.01 E-value=1.1e+02 Score=27.34 Aligned_cols=48 Identities=13% Similarity=0.237 Sum_probs=26.5
Q ss_pred hcCCCEEEEecCC-CCCCCCc-------CcceecCHHHH----HHHHHHHHhc--CCCeEEE
Q 017484 190 TYAPGAIVLQCGA-DSLAGDR-------LGCFNLSIDGH----AECVRFVKKF--NLPLLVT 237 (371)
Q Consensus 190 ~f~Pd~Ivvq~G~-D~~~gDp-------lg~~~Lt~~g~----~~~~~~l~~~--~~pvl~l 237 (371)
..+||+|++..|. |...+-+ ...+..+.+.| .+++..+++. +.+|+++
T Consensus 66 ~~~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~ 127 (204)
T cd04506 66 LKKADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLV 127 (204)
T ss_pred cccCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3589999999998 4433211 12223333434 4456666654 3455554
No 136
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.24 E-value=1.8e+02 Score=25.38 Aligned_cols=40 Identities=8% Similarity=0.143 Sum_probs=23.5
Q ss_pred hcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc
Q 017484 190 TYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF 230 (371)
Q Consensus 190 ~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~ 230 (371)
.++||+|+++.|. |+....+-+ ..--.+.+.++++.+++.
T Consensus 65 ~~~pd~Vii~~G~ND~~~~~~~~-~~~~~~~l~~li~~i~~~ 105 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQNWKY-KDDFKKDYETMIDSFQAL 105 (188)
T ss_pred ccCCCEEEEEcccCCCCCCCCcc-HHHHHHHHHHHHHHHHHH
Confidence 4799999999998 555432110 001123455667766654
No 137
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=21.94 E-value=2.1e+02 Score=30.03 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCC-CEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCc
Q 017484 179 LFKTIISKVVETYAP-GAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTK 244 (371)
Q Consensus 179 ~f~~vi~~~~~~f~P-d~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~ 244 (371)
-+++.|..+.+.|+| ++|+|.+.. ..+.||.+.. +.+.++ ..++||+.+--.||.-
T Consensus 118 kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~a----------v~~~~~~~~~~pVi~v~t~gf~G 176 (466)
T TIGR01282 118 KLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEA----------VAKKASKELGKPVVPVRCEGFRG 176 (466)
T ss_pred HHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHH----------HHHHHhhhcCCcEEEEeCCCcCC
Confidence 456677788999999 887766554 6666764322 333333 3589999999999963
No 138
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=21.94 E-value=1.9e+02 Score=27.57 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCCCCcCcceec-CHHHH----HHHHHHHHhcCCCeEEEcc
Q 017484 183 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNL-SIDGH----AECVRFVKKFNLPLLVTGG 239 (371)
Q Consensus 183 vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~L-t~~g~----~~~~~~l~~~~~pvl~l~g 239 (371)
.+...+++++|+.||| |++..+.. ....+ .++..++++.+..++++-+
T Consensus 122 ~l~~~i~~~~~~~vVI---------DSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e 174 (259)
T TIGR03878 122 TLAYAIKEYKVKNTVI---------DSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQ 174 (259)
T ss_pred HHHHHHHhhCCCEEEE---------cCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3455678899998887 44332211 11222 2355667778888887754
No 139
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=21.92 E-value=62 Score=29.40 Aligned_cols=46 Identities=30% Similarity=0.433 Sum_probs=36.2
Q ss_pred cCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHH
Q 017484 200 CGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARC 250 (371)
Q Consensus 200 ~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~ 250 (371)
+|+|...-|. +|++...++++.++..+.++.+...||=|+.+++..
T Consensus 99 ~g~d~I~lD~-----~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~y 144 (169)
T PF01729_consen 99 AGADIIMLDN-----MSPEDLKEAVEELRELNPRVKIEASGGITLENIAEY 144 (169)
T ss_dssp TT-SEEEEES------CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHH
T ss_pred hCCCEEEecC-----cCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHH
Confidence 5666666663 477888999999988888899999999999988774
No 140
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=21.89 E-value=1.3e+02 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=27.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 017484 170 GIDDTSFTRLFKTIISKVVETYAPGAIVLQC 200 (371)
Q Consensus 170 G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~ 200 (371)
..+.+++...=+++|...++.||||+++|-.
T Consensus 84 ~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~ 114 (400)
T COG4671 84 DGDLEETKKLRSQLILSTAETFKPDIFIVDK 114 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 3468899999999999999999999999853
No 141
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=21.70 E-value=3e+02 Score=26.77 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=34.1
Q ss_pred HhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCC
Q 017484 189 ETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 261 (371)
Q Consensus 189 ~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~ 261 (371)
-+-+||+||.+.+..... .-.+..+.+++.++|++++-....+...+.+ |...++.++|+
T Consensus 88 ~~l~PDLIi~~~~~~~~~------------~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~-~i~~lg~i~g~ 147 (342)
T cd01139 88 LTLKPDLVILNIWAKTTA------------EESGILEKLEQAGIPVVFVDFRQKPLKNTTP-SMRLLGKALGR 147 (342)
T ss_pred hhcCCCEEEEeccccccc------------hhhHHHHHHHHcCCcEEEEeCCCchhhhHHH-HHHHHHHHhCC
Confidence 456999998875432110 1123667788889999988532213333322 33445556665
No 142
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=21.63 E-value=2.5e+02 Score=29.23 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecC
Q 017484 171 IDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS 216 (371)
Q Consensus 171 ~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt 216 (371)
.+..+|.+.++.--...++ -+=-.||-+||||+.--| ||.+-+.
T Consensus 116 SGEP~f~E~mq~kYhd~A~-ekGVYIVsaCGfDSIPaD-lGv~f~~ 159 (423)
T KOG2733|consen 116 SGEPQFMERMQLKYHDLAK-EKGVYIVSACGFDSIPAD-LGVMFLR 159 (423)
T ss_pred CCCHHHHHHHHHHHHHHHH-hcCeEEEeecccCCCCcc-ceeeeeh
Confidence 5678999988876666544 355689999999999987 7776554
No 143
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=21.46 E-value=5.6e+02 Score=25.15 Aligned_cols=70 Identities=21% Similarity=0.389 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhc-CCCeEEEccCCCCchhhHHHHHHHHhhh
Q 017484 180 FKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF-NLPLLVTGGGGYTKENVARCWTVETGIL 258 (371)
Q Consensus 180 f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~-~~pvl~l~gGGY~~~~~ar~~~~~t~~l 258 (371)
+.+.+...++++-||+|+++-=.-+..-|+ +-++.++.. ..|++ .|-|-+.+|+...|.+.-+.+
T Consensus 165 ~~~~v~dtver~~aDaVI~tG~~TG~~~d~------------~el~~a~~~~~~pvl--vGSGv~~eN~~~~l~~adG~I 230 (263)
T COG0434 165 LEEAVKDTVERGLADAVIVTGSRTGSPPDL------------EELKLAKEAVDTPVL--VGSGVNPENIEELLKIADGVI 230 (263)
T ss_pred HHHHHHHHHHccCCCEEEEecccCCCCCCH------------HHHHHHHhccCCCEE--EecCCCHHHHHHHHHHcCceE
Confidence 455666778889999998864333444332 123444443 45544 599999999999999988888
Q ss_pred hCCCC
Q 017484 259 LDTEL 263 (371)
Q Consensus 259 lg~~~ 263 (371)
.|..+
T Consensus 231 vgT~l 235 (263)
T COG0434 231 VGTSL 235 (263)
T ss_pred EEEEE
Confidence 87544
No 144
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=21.43 E-value=97 Score=30.39 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.2
Q ss_pred HHHhCCcEEEEeccccCc
Q 017484 101 LLKYHARVLYIDIDVHHG 118 (371)
Q Consensus 101 ll~~~~RVliiD~DvHHG 118 (371)
|.+..+|||+||+|...+
T Consensus 24 La~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 24 MAEMGKRVLQLGCDPKHD 41 (296)
T ss_pred HHHCCCeEEEEEecCCCC
Confidence 334578999999999864
No 145
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=21.43 E-value=3.5e+02 Score=27.88 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCH---HHHHHHHHHHHhcCCCeEEEccCCCCc
Q 017484 175 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI---DGHAECVRFVKKFNLPLLVTGGGGYTK 244 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~---~g~~~~~~~l~~~~~pvl~l~gGGY~~ 244 (371)
+....++.++ .++.+.+||+||+. | |..- ..+-+. .-+.+.++.+++.++|++++ -|-...
T Consensus 23 ~~~~~l~~l~-~~i~~~~~D~viIa-G-DifD-----~~~p~~~a~~~~~~~l~~L~~~~~~v~~I-~GNHD~ 86 (407)
T PRK10966 23 EHQAFLDWLL-EQVQEHQVDAIIVA-G-DIFD-----TGSPPSYARELYNRFVVNLQQTGCQLVVL-AGNHDS 86 (407)
T ss_pred HHHHHHHHHH-HHHHhcCCCEEEEC-C-cccc-----CCCCcHHHHHHHHHHHHHHHhcCCcEEEE-cCCCCC
Confidence 4455555544 55677999998764 2 2221 111111 22334445566667887776 455543
No 146
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.17 E-value=1.1e+02 Score=26.38 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=27.4
Q ss_pred HHhcCCCEEEEecCC-CCCCCCcCcceecCH----HHHHHHHHHHHh--cCCCeEEE
Q 017484 188 VETYAPGAIVLQCGA-DSLAGDRLGCFNLSI----DGHAECVRFVKK--FNLPLLVT 237 (371)
Q Consensus 188 ~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~----~g~~~~~~~l~~--~~~pvl~l 237 (371)
+...+||+|+|++|. |...+.+ -..++ +.+.++++.+++ -+.+|+++
T Consensus 57 ~~~~~~d~v~l~~G~ND~~~~~~---~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~ 110 (191)
T cd01834 57 VLPAKPDVVSIMFGINDSFRGFD---DPVGLEKFKTNLRRLIDRLKNKESAPRIVLV 110 (191)
T ss_pred cccCCCCEEEEEeecchHhhccc---ccccHHHHHHHHHHHHHHHHcccCCCcEEEE
Confidence 345789999999998 5544311 11233 445556666642 24555554
No 147
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=20.95 E-value=4.4e+02 Score=23.49 Aligned_cols=16 Identities=6% Similarity=0.378 Sum_probs=11.6
Q ss_pred HHHHHHHhcCCCEEEE
Q 017484 183 IISKVVETYAPGAIVL 198 (371)
Q Consensus 183 vi~~~~~~f~Pd~Ivv 198 (371)
.+..++++++||+||+
T Consensus 36 ~~~~~i~~~~pd~vi~ 51 (171)
T cd07384 36 AFKTALQRLKPDVVLF 51 (171)
T ss_pred HHHHHHHhcCCCEEEE
Confidence 3445567899999875
No 148
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=20.74 E-value=3.9e+02 Score=25.19 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEE-------ecCCCCCCCCcCcceecCH----HHHHHHHHHHHhcCCCeEEEcc
Q 017484 171 IDDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNLPLLVTGG 239 (371)
Q Consensus 171 ~~D~~y~~~f~~vi~~~~~~f~Pd~Ivv-------q~G~D~~~gDplg~~~Lt~----~g~~~~~~~l~~~~~pvl~l~g 239 (371)
.=+.+.+..+..++..+...-...+||+ ++|.|.-.-..... .-.. .....+++.+..+.+|++....
T Consensus 24 al~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~kpvIAav~ 102 (257)
T PRK07658 24 ALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTE-AEQATELAQLGQVTFERVEKFSKPVIAAIH 102 (257)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCc-hhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 3456677777777766554333345555 33444321000000 0011 1122345556667889886654
Q ss_pred C
Q 017484 240 G 240 (371)
Q Consensus 240 G 240 (371)
|
T Consensus 103 G 103 (257)
T PRK07658 103 G 103 (257)
T ss_pred C
Confidence 3
No 149
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=20.64 E-value=2.8e+02 Score=26.27 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 017484 172 DDTSFTRLFKTIISKVVETYAPGAIVLQ 199 (371)
Q Consensus 172 ~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq 199 (371)
=+.+.+..+..++..+...-...+||+.
T Consensus 27 l~~~~~~~l~~al~~~~~d~~vr~vVl~ 54 (257)
T PRK06495 27 LSRELRDELIAVFDEISERPDVRVVVLT 54 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEE
Confidence 3556666666677665443333456554
No 150
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=20.61 E-value=3.5e+02 Score=24.22 Aligned_cols=52 Identities=25% Similarity=0.357 Sum_probs=26.6
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEcc
Q 017484 184 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 239 (371)
Q Consensus 184 i~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~g 239 (371)
+..+++..+||+||+ +| |...+..-.. -+..-+.++++.+.+.++|+.++.|
T Consensus 33 ~~~~~~~~~~d~vv~-~G-Dl~~~~~~~~--~~~~~~~~~~~~l~~~~~p~~~~~G 84 (199)
T cd07383 33 IERVLDAEKPDLVVL-TG-DLITGENTND--NSTSALDKAVSPMIDRKIPWAATFG 84 (199)
T ss_pred HHHHHhhcCCCEEEE-CC-ccccCCCCch--HHHHHHHHHHHHHHHcCCCEEEECc
Confidence 445566779998654 33 3322211000 0122333444555556889887764
No 151
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=20.51 E-value=4e+02 Score=25.45 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCCeEEEccC
Q 017484 221 AECVRFVKKFNLPLLVTGGG 240 (371)
Q Consensus 221 ~~~~~~l~~~~~pvl~l~gG 240 (371)
..++..+..+.+|++....|
T Consensus 84 ~~~~~~i~~~~kPvIAaV~G 103 (258)
T PRK06190 84 PNPSPAWPAMRKPVIGAING 103 (258)
T ss_pred HHHHHHHHhCCCCEEEEECC
Confidence 34556677788999866543
No 152
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.36 E-value=1.1e+02 Score=30.42 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=36.0
Q ss_pred cCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHH
Q 017484 200 CGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCW 251 (371)
Q Consensus 200 ~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~ 251 (371)
+|+|...-| |++++...++++.+++.+..+.+.--||=|..|++...
T Consensus 215 ~GaD~I~LD-----n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya 261 (288)
T PRK07428 215 YGADIIMLD-----NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVA 261 (288)
T ss_pred cCCCEEEEC-----CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHH
Confidence 566666555 67889999999998876555666667999999888754
No 153
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=20.29 E-value=5.3e+02 Score=27.03 Aligned_cols=118 Identities=19% Similarity=0.359 Sum_probs=65.8
Q ss_pred ccCcccccccccc---------CCcEEEEeccccCCCCCCCC-CCCC-------cccCCCCcceEEeecCCCCCChHHHH
Q 017484 115 VHHGDGVEEAFYF---------TDRVMTVSFHKFGDLFFPGT-GDVK-------EIGEREGKFYAINVPLKDGIDDTSFT 177 (371)
Q Consensus 115 vHHGdGtq~~F~~---------d~~VltiSiH~~~~~ffPgt-G~~~-------~~G~~~G~~~~vNvPL~~G~~D~~y~ 177 (371)
.|+|-|-|.+++. -.++|++- .+.+|--| |... ++-...+..+.+|.|.+..++=
T Consensus 100 thQGRgAE~Il~~i~ik~~~~~pg~~~~~~----sN~~FdTTr~h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~---- 171 (471)
T COG3033 100 THQGRGAENILIPILIKKGEQEPGSKMVAF----SNYHFDTTRGHIQINGATPRNVYVDEAFDTEVKYPFKGNFDL---- 171 (471)
T ss_pred ccCCccHHHHHHHHHhhhccccCCcccccc----ccceecchhHHHHhcCCccccccccccccccccCCCCCccCH----
Confidence 8999999998863 12344331 23344422 1111 1112223334445555444332
Q ss_pred HHHHHHHHHHHHhcCCC---EEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEE-------------ccCC
Q 017484 178 RLFKTIISKVVETYAPG---AIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT-------------GGGG 241 (371)
Q Consensus 178 ~~f~~vi~~~~~~f~Pd---~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l-------------~gGG 241 (371)
+-+ ++++++-.+| .|++.--..+..|-| +|++...++.++.++.++|+++= -|-|
T Consensus 172 ~kL----e~lidevG~~nvp~I~~tiT~NsagGQp-----VSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~g 242 (471)
T COG3033 172 EKL----ERLIDEVGADNVPYIVLTITNNSAGGQP-----VSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPG 242 (471)
T ss_pred HHH----HHHHHHhCcccCcEEEEEEeccccCCCc-----chHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcc
Confidence 223 3444455566 566665556665655 67777788888888999998763 2567
Q ss_pred CCchhhHH
Q 017484 242 YTKENVAR 249 (371)
Q Consensus 242 Y~~~~~ar 249 (371)
|...+++.
T Consensus 243 Yrd~sI~~ 250 (471)
T COG3033 243 YRDWSIEE 250 (471)
T ss_pred cccccHHH
Confidence 77655544
No 154
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=20.24 E-value=4.2e+02 Score=22.11 Aligned_cols=36 Identities=8% Similarity=0.057 Sum_probs=22.8
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCC
Q 017484 186 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNL 232 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~ 232 (371)
..+.+.+|++|++++-- .-+.....++.+.+++.+.
T Consensus 44 ~~a~~~~~d~V~iS~~~-----------~~~~~~~~~~~~~L~~~~~ 79 (122)
T cd02071 44 EAAIQEDVDVIGLSSLS-----------GGHMTLFPEVIELLRELGA 79 (122)
T ss_pred HHHHHcCCCEEEEcccc-----------hhhHHHHHHHHHHHHhcCC
Confidence 44567899999997652 1233344567777777633
No 155
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=20.04 E-value=1.7e+02 Score=28.06 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=34.4
Q ss_pred HHHHhcCCCEEEEecCCCC---CCCCcCcceecCHHHHHHHHHHHHhcCCCeEEE
Q 017484 186 KVVETYAPGAIVLQCGADS---LAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 237 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~D~---~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l 237 (371)
.+++..+||+||-.++.-. ...+|.-.+.+...+-..+.+.++..+.+++.+
T Consensus 48 ~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~ 102 (299)
T PRK09987 48 ETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHY 102 (299)
T ss_pred HHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4455678999998887643 234554444556667777888887777776543
Done!