Query 017484
Match_columns 371
No_of_seqs 295 out of 1647
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 15:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a69_A Histone deacetylase 3,; 100.0 3E-104 1E-108 790.8 33.4 316 4-319 2-376 (376)
2 3max_A HD2, histone deacetylas 100.0 1E-101 3E-106 769.6 33.1 309 3-312 1-367 (367)
3 3ew8_A HD8, histone deacetylas 100.0 5E-100 2E-104 761.3 30.5 314 1-316 10-380 (388)
4 1c3p_A Protein (HDLP (histone 100.0 5.6E-83 1.9E-87 638.0 22.0 305 5-312 2-371 (375)
5 1zz1_A Histone deacetylase-lik 100.0 2.2E-77 7.7E-82 596.5 27.4 287 6-309 2-365 (369)
6 2vqm_A HD4, histone deacetylas 100.0 2.3E-77 7.7E-82 604.3 22.9 306 3-324 6-399 (413)
7 3q9b_A Acetylpolyamine amidohy 100.0 2.2E-73 7.5E-78 561.3 23.1 224 35-260 115-341 (341)
8 3men_A Acetylpolyamine aminohy 100.0 4.9E-73 1.7E-77 562.1 25.1 224 35-260 134-359 (362)
9 2pqp_A HD7A, histone deacetyla 100.0 4.8E-73 1.6E-77 570.4 24.8 295 5-315 36-419 (421)
10 4hf7_A Putative acylhydrolase; 82.6 1.3 4.3E-05 38.8 4.6 71 162-237 53-124 (209)
11 1ivn_A Thioesterase I; hydrola 75.6 5.4 0.00019 33.6 6.3 49 186-237 56-105 (190)
12 3hp4_A GDSL-esterase; psychrot 73.5 3.9 0.00013 34.1 4.8 67 163-237 42-109 (185)
13 3p94_A GDSL-like lipase; serin 70.9 3.4 0.00012 34.9 3.8 72 162-238 49-121 (204)
14 3ced_A Methionine import ATP-b 65.1 6.7 0.00023 31.0 4.2 58 180-237 33-95 (98)
15 3skv_A SSFX3; jelly roll, GDSL 65.1 41 0.0014 32.8 10.8 51 185-238 237-290 (385)
16 4h08_A Putative hydrolase; GDS 65.0 24 0.0008 29.8 8.1 59 161-231 47-109 (200)
17 3mil_A Isoamyl acetate-hydroly 61.4 16 0.00053 31.4 6.3 70 161-238 45-120 (240)
18 3bzw_A Putative lipase; protei 57.6 15 0.0005 33.2 5.7 49 162-213 61-110 (274)
19 3d2m_A Putative acetylglutamat 53.9 16 0.00054 36.2 5.6 61 174-242 25-85 (456)
20 3rjt_A Lipolytic protein G-D-S 53.4 4.5 0.00015 34.2 1.4 51 187-237 78-136 (216)
21 2qsw_A Methionine import ATP-b 51.1 3.6 0.00012 32.5 0.3 56 181-236 37-96 (100)
22 1uf3_A Hypothetical protein TT 49.4 43 0.0015 28.4 7.1 54 180-243 21-74 (228)
23 1es9_A PAF-AH, platelet-activa 48.9 13 0.00043 32.5 3.6 69 162-238 67-137 (232)
24 2q0q_A ARYL esterase; SGNH hyd 48.7 24 0.00081 29.9 5.3 41 186-231 76-122 (216)
25 2vpt_A Lipolytic enzyme; ester 47.8 22 0.00075 30.5 5.0 58 171-237 66-126 (215)
26 1k7c_A Rhamnogalacturonan acet 46.6 47 0.0016 29.2 7.1 42 162-206 35-78 (233)
27 3dhx_A Methionine import ATP-b 46.4 5.1 0.00017 32.1 0.5 54 182-235 36-93 (106)
28 3dci_A Arylesterase; SGNH_hydr 46.3 36 0.0012 29.6 6.2 40 186-230 94-139 (232)
29 1yzf_A Lipase/acylhydrolase; s 46.1 27 0.00092 28.7 5.1 66 162-238 42-111 (195)
30 2q8u_A Exonuclease, putative; 44.0 46 0.0016 31.0 6.9 58 174-239 44-104 (336)
31 2buf_A Acetylglutamate kinase; 44.0 56 0.0019 30.5 7.5 63 174-243 8-70 (300)
32 2ap9_A NAG kinase, acetylgluta 42.6 31 0.0011 32.3 5.4 67 171-244 4-70 (299)
33 2xdq_A Light-independent proto 42.4 28 0.00095 34.5 5.3 69 180-259 85-155 (460)
34 3av0_A DNA double-strand break 42.2 49 0.0017 31.8 6.9 58 174-239 43-103 (386)
35 2o14_A Hypothetical protein YX 41.5 29 0.00098 33.5 5.1 68 162-237 202-275 (375)
36 1ii7_A MRE11 nuclease; RAD50, 41.0 86 0.003 29.2 8.3 58 174-239 23-83 (333)
37 3aek_B Light-independent proto 39.7 53 0.0018 33.4 7.0 56 179-245 72-128 (525)
38 2qrr_A Methionine import ATP-b 39.4 16 0.00055 28.7 2.4 57 181-237 37-97 (101)
39 1vjg_A Putative lipase from th 38.1 27 0.00092 29.8 3.9 68 163-238 60-136 (218)
40 3dff_A Teicoplanin pseudoaglyc 37.1 37 0.0013 31.5 5.0 34 175-208 131-164 (273)
41 3dfi_A Pseudoaglycone deacetyl 35.2 44 0.0015 30.9 5.1 34 175-208 128-161 (270)
42 3dc7_A Putative uncharacterize 34.4 22 0.00074 30.8 2.7 47 191-237 81-135 (232)
43 3l3s_A Enoyl-COA hydratase/iso 31.5 1.5E+02 0.005 27.0 8.0 69 171-239 29-112 (263)
44 2rd5_A Acetylglutamate kinase- 31.3 31 0.0011 32.2 3.4 64 173-243 17-80 (298)
45 1fxw_F Alpha2, platelet-activa 30.7 33 0.0011 29.8 3.3 63 163-237 69-137 (229)
46 1g3q_A MIND ATPase, cell divis 30.6 41 0.0014 29.1 3.9 18 102-119 28-45 (237)
47 2ivx_A Cyclin-T2; transcriptio 30.4 1.2E+02 0.004 27.3 7.1 58 240-310 182-239 (257)
48 2bty_A Acetylglutamate kinase; 29.7 55 0.0019 30.1 4.8 63 175-244 4-66 (282)
49 3q9l_A Septum site-determining 29.0 45 0.0015 29.3 3.9 18 102-119 28-45 (260)
50 3he2_A Enoyl-COA hydratase ECH 28.7 1.3E+02 0.0045 27.6 7.2 74 163-240 36-116 (264)
51 1y80_A Predicted cobalamin bin 27.8 1.2E+02 0.0041 26.3 6.6 132 73-243 41-182 (210)
52 3jug_A Beta-mannanase; TIM-bar 27.6 4E+02 0.014 25.2 11.0 29 172-201 153-181 (345)
53 1mio_B Nitrogenase molybdenum 27.5 74 0.0025 31.5 5.6 56 179-244 83-144 (458)
54 1hyq_A MIND, cell division inh 26.5 53 0.0018 29.0 3.9 17 103-119 29-45 (263)
55 4fva_A 5'-tyrosyl-DNA phosphod 26.4 68 0.0023 27.3 4.5 19 183-201 35-53 (256)
56 3tho_B Exonuclease, putative; 26.2 1.2E+02 0.0041 29.0 6.7 62 173-243 25-89 (379)
57 3t1i_A Double-strand break rep 25.7 1.5E+02 0.0051 29.5 7.4 47 174-228 54-100 (431)
58 2ej5_A Enoyl-COA hydratase sub 25.5 1.9E+02 0.0064 26.1 7.6 64 173-240 28-103 (257)
59 2q02_A Putative cytoplasmic pr 25.3 2.3E+02 0.0078 24.6 8.0 57 173-235 80-137 (272)
60 3pdi_B Nitrogenase MOFE cofact 25.2 1E+02 0.0035 30.7 6.1 57 179-245 79-141 (458)
61 2hsj_A Putative platelet activ 25.1 30 0.001 29.2 1.9 43 188-237 81-130 (214)
62 3ea0_A ATPase, para family; al 24.4 44 0.0015 29.0 3.0 19 103-121 31-50 (245)
63 2f6q_A Peroxisomal 3,2-trans-e 24.1 2.1E+02 0.0072 26.2 7.7 78 162-240 40-130 (280)
64 2xdq_B Light-independent proto 23.8 84 0.0029 31.7 5.3 56 181-246 77-134 (511)
65 2waa_A Acetyl esterase, xylan 23.7 31 0.0011 32.7 1.9 46 190-237 223-271 (347)
66 3d03_A Phosphohydrolase; glyce 23.7 1.8E+02 0.0062 25.2 7.0 55 176-239 24-79 (274)
67 4f1h_A Tyrosyl-DNA phosphodies 23.6 85 0.0029 26.0 4.5 18 183-200 25-42 (250)
68 3sll_A Probable enoyl-COA hydr 23.5 2.6E+02 0.009 25.7 8.3 77 163-239 39-131 (290)
69 2q8p_A Iron-regulated surface 23.2 1.9E+02 0.0065 25.3 7.0 53 189-261 57-109 (260)
70 2wao_A Endoglucanase E; plant 23.1 42 0.0014 31.5 2.7 47 190-238 211-260 (341)
71 3kjh_A CO dehydrogenase/acetyl 22.7 57 0.0019 28.1 3.3 25 178-203 118-142 (254)
72 2yxb_A Coenzyme B12-dependent 22.6 1.1E+02 0.0037 25.9 5.0 35 186-231 63-97 (161)
73 3jug_A Beta-mannanase; TIM-bar 22.1 2.1E+02 0.0073 27.2 7.5 65 175-244 117-186 (345)
74 2v5h_A Acetylglutamate kinase; 22.1 53 0.0018 31.2 3.2 63 174-243 31-93 (321)
75 3hrx_A Probable enoyl-COA hydr 21.7 2.2E+02 0.0076 25.5 7.3 70 171-240 23-100 (254)
76 3r6h_A Enoyl-COA hydratase, EC 21.7 2.4E+02 0.0081 25.0 7.4 68 171-239 27-103 (233)
77 4gz1_A Tyrosyl-DNA phosphodies 21.7 95 0.0032 26.2 4.5 17 184-200 32-48 (256)
78 2whl_A Beta-mannanase, baman5; 21.2 3.6E+02 0.012 24.2 8.7 65 175-244 94-163 (294)
79 4hwg_A UDP-N-acetylglucosamine 20.9 2.1E+02 0.0071 27.4 7.2 51 173-241 76-126 (385)
80 3oc7_A Enoyl-COA hydratase; se 20.4 3E+02 0.01 24.8 7.9 67 173-239 36-116 (267)
81 1szn_A Alpha-galactosidase; (b 20.3 1.7E+02 0.0057 28.8 6.5 67 170-236 25-95 (417)
82 3u7q_A Nitrogenase molybdenum- 20.1 1.6E+02 0.0053 29.7 6.3 56 179-244 130-188 (492)
No 1
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.8e-104 Score=790.81 Aligned_cols=316 Identities=64% Similarity=1.219 Sum_probs=304.9
Q ss_pred CCeEEEEEcCCcccccCCCCCCCCchhh----------------------------------------------------
Q 017484 4 KDKISYFYDGDVGSVYFGPNHPMKPHRL---------------------------------------------------- 31 (371)
Q Consensus 4 ~~~v~y~~~~~~~~~~~g~~hP~~p~R~---------------------------------------------------- 31 (371)
||||+|+||+++++|+||++|||+|.|+
T Consensus 2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~ 81 (376)
T 4a69_A 2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF 81 (376)
T ss_dssp CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence 6799999999999999999999999997
Q ss_pred ------cccCCCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHhC
Q 017484 32 ------YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH 105 (371)
Q Consensus 32 ------~~~~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~~ 105 (371)
|+++.|||+|+++|++|++++||+|.||+++++|++++|+||+||+|||++++|+||||||||||||++|++++
T Consensus 82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~ 161 (376)
T 4a69_A 82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH 161 (376)
T ss_dssp HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHHH
Q 017484 106 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS 185 (371)
Q Consensus 106 ~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi~ 185 (371)
+||||||||||||||||++||+|++|||+|||+++..||||||..+++|.++|++|++|||||+|++|++|+.+|+++|.
T Consensus 162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~ 241 (376)
T 4a69_A 162 PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVIN 241 (376)
T ss_dssp SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCCCCCC
Q 017484 186 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPN 265 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~~~ 265 (371)
|++++|+||+||+|||+|+|.+||||.|+||.+||++|+++++++++|+++++||||++++++|||+++|++|+|.+++.
T Consensus 242 p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~ 321 (376)
T 4a69_A 242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE 321 (376)
T ss_dssp HHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhCCCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHhhcCCCCCCcc
Q 017484 266 EIPENEYIKYFAPECSLRIP-NGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQ 319 (371)
Q Consensus 266 ~iP~~~~~~~~~p~~~l~~~-~~~~~n~n~~~~l~~i~~~i~~~l~~l~~apsvq 319 (371)
++|+++|++||+|+|+|+++ +++|+|+|+++|||+|+++|++|||+|+++||||
T Consensus 322 ~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~ 376 (376)
T 4a69_A 322 ELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376 (376)
T ss_dssp BCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred CCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999999999999999998 8999999999999999999999999999999998
No 2
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=100.00 E-value=9.9e-102 Score=769.58 Aligned_cols=309 Identities=65% Similarity=1.242 Sum_probs=302.4
Q ss_pred CCCeEEEEEcCCcccccCCCCCCCCchhh---------------------------------------------------
Q 017484 3 SKDKISYFYDGDVGSVYFGPNHPMKPHRL--------------------------------------------------- 31 (371)
Q Consensus 3 ~~~~v~y~~~~~~~~~~~g~~hP~~p~R~--------------------------------------------------- 31 (371)
.|+||+|+||+++++|+||++|||+|.|+
T Consensus 1 ~~~~v~~~y~~~~~~~~~g~~HPe~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~ 80 (367)
T 3max_A 1 AKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSE 80 (367)
T ss_dssp CCCCEEEECCGGGGGCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCGGGGGG
T ss_pred CCCeEEEEECccccCcCCCCCCCCCHHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhhCCHHHHHHHHHhCccccch
Confidence 47899999999999999999999999998
Q ss_pred -------cccCCCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHh
Q 017484 32 -------YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKY 104 (371)
Q Consensus 32 -------~~~~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~ 104 (371)
|++++|||+|+++|++|++++||+|.||+++++++.++|+||+||+|||++++|+|||+||||||||++|++.
T Consensus 81 ~~~~~~~~~l~~Dtp~~~~~~e~a~~aaGgsl~aa~~v~~~~~~~Ai~~pgG~HHA~~~~a~GFC~~NdvaiAa~~l~~~ 160 (367)
T 3max_A 81 YSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKY 160 (367)
T ss_dssp CHHHHHHTTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBCSCHHHHHHHHHTTT
T ss_pred hhhHhhhcCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCcceEecCCCCCCcCCcCCCCCchhhhHHHHHHHHHHHc
Confidence 3577899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHH
Q 017484 105 HARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTII 184 (371)
Q Consensus 105 ~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi 184 (371)
++||+|||||||||||||++||+|++|||+|+|+++. ||||||..+++|.++|++|++|||||+|++|++|+.+|+++|
T Consensus 161 ~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~-~fPgtg~~~e~G~g~g~g~~vNvPL~~g~~d~~y~~~~~~~~ 239 (367)
T 3max_A 161 HQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGE-YFPGTGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPII 239 (367)
T ss_dssp CSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSS-CTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCCchhhHHhcCCCCEEEEecccCCC-CCCCCCCccccCCCCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999975 999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCCCCC
Q 017484 185 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELP 264 (371)
Q Consensus 185 ~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~~ 264 (371)
.|++++|+||+||+|||+|++.+||||+|+||.+||++|+++++++++|+++++||||++++|+|||+++|++++|.++|
T Consensus 240 ~~~~~~f~Pd~ivvsaG~D~~~~Dplg~~~lt~~g~~~~~~~~~~~~~p~v~~~eGGY~~~~var~wt~~ta~~~~~~i~ 319 (367)
T 3max_A 240 SKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIP 319 (367)
T ss_dssp HHHHHHHCCSEEEEECCGGGBTTCSSCCCCBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhCCCEEEEECCccCcCCCCCCCeeeCHHHHHHHHHHHHhcCCCEEEEeCCCCChhHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 017484 265 NEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312 (371)
Q Consensus 265 ~~iP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l~~l 312 (371)
+++|+|+||+||+|+|+|++++++|+|+|+++||++|+++|+||||+|
T Consensus 320 ~~~p~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~ 367 (367)
T 3max_A 320 NELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML 367 (367)
T ss_dssp SBCCCCTTGGGGTTTCBSSCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCchhhHHhhCCCeeccCCcccccCCCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999976
No 3
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=100.00 E-value=4.8e-100 Score=761.28 Aligned_cols=314 Identities=42% Similarity=0.804 Sum_probs=301.3
Q ss_pred CCCCCeEEEEEcCCcccccCCCCCCCCchhh-------------------------------------------------
Q 017484 1 MRSKDKISYFYDGDVGSVYFGPNHPMKPHRL------------------------------------------------- 31 (371)
Q Consensus 1 ~~~~~~v~y~~~~~~~~~~~g~~hP~~p~R~------------------------------------------------- 31 (371)
+++|+||+|+||+++++|. ++|||+|.|+
T Consensus 10 ~~~~~~~~~~y~~~~~~~~--~~HPe~P~Rl~~i~~ll~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~ 87 (388)
T 3ew8_A 10 SGQSLVPVYIYSPEYVSMC--DSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGD 87 (388)
T ss_dssp ----CCCEEECCHHHHHHH--TTCTTSTTHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHC-
T ss_pred cCCCCcEEEEEChHHhccC--CCCCCCcHHHHHHHHHHHHcCCcccCeEeCCCCCCHHHHHhhCCHHHHHHHHHhccccc
Confidence 3578999999999999874 6799999998
Q ss_pred --------cccCCCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHH
Q 017484 32 --------YNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLK 103 (371)
Q Consensus 32 --------~~~~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~ 103 (371)
|++++|||+|+++|++|++++||+|.||+++++|++++||||+||+|||++++|+||||||||||||++|++
T Consensus 88 ~~~~~~~~~~lg~Dtp~~~~~~e~a~~aaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~~NdiaiAa~~l~~ 167 (388)
T 3ew8_A 88 DDHPDSIEYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRR 167 (388)
T ss_dssp -------CCSCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTT
T ss_pred ccchhhhhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHcCCCceeeecCCcccceeecCCCCchhhhHHHHHHHHHHh
Confidence 467789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHH
Q 017484 104 YHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTI 183 (371)
Q Consensus 104 ~~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~v 183 (371)
..+||||||||||||||||++||+|++|||+|||+++.+||||||..+++|.++|++|++|||||+|++|++|+.+|+++
T Consensus 168 ~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~d~~y~~~~~~~ 247 (388)
T 3ew8_A 168 KFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESV 247 (388)
T ss_dssp TCSCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEecCCCCChhHHHHhccCCCEEEEecCCCCCCCCCCCCCcccccCCCCcceeeeccCCCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999987899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCCCC
Q 017484 184 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTEL 263 (371)
Q Consensus 184 i~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~ 263 (371)
|.|++++|+||+||+|||+|++.+||||.|+||.+||++|+++|+++++|+++++||||++.+|+|||+++|++|+|+++
T Consensus 248 l~p~~~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~~~p~l~~~gGGY~~~~var~w~~~~~~l~g~~l 327 (388)
T 3ew8_A 248 LKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTL 327 (388)
T ss_dssp HHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCChhHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCCCC
Q 017484 264 PNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAP 316 (371)
Q Consensus 264 ~~~iP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l~~l~~ap 316 (371)
|++||+++||++|+|+|+|++++++|+|+|+++||++|+++|++|||+|++-.
T Consensus 328 ~~~lP~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~l~~~~~~~ 380 (388)
T 3ew8_A 328 SSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVVIEG 380 (388)
T ss_dssp CSBCCCCTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCCCCcccchhhcCCCccccCCcccCCCCCCHHHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999998753
No 4
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=100.00 E-value=5.6e-83 Score=638.04 Aligned_cols=305 Identities=33% Similarity=0.503 Sum_probs=273.4
Q ss_pred CeEEEEEcCCcccccCCCCCCCCchhh-----------------------------------------------------
Q 017484 5 DKISYFYDGDVGSVYFGPNHPMKPHRL----------------------------------------------------- 31 (371)
Q Consensus 5 ~~v~y~~~~~~~~~~~g~~hP~~p~R~----------------------------------------------------- 31 (371)
++++|+||+++..|.+|++|||+|.|+
T Consensus 2 ~~t~~vy~~~~~~h~~g~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~at~~~l~~vH~~~Yv~~l~~~~~~~~~~~~ 81 (375)
T 1c3p_A 2 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHTEDYINTLMEAERCQCVPKG 81 (375)
T ss_dssp CCEEEEECGGGGGSCCCTTCGGGSCCHHHHHHHHHHTTCCCGGGEEECCCCCHHHHTTTSCHHHHHHHHHHHHHTSCCTT
T ss_pred ceEEEEECHHHcCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCeEeCCCCCCHHHHHHhCCHHHHHHHHHhccccCCChH
Confidence 368999999999999999999999998
Q ss_pred ----ccc-CCCCCCChhHHHHHHHHHhHHHHHHHHHHccccceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHhC-
Q 017484 32 ----YNL-GEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH- 105 (371)
Q Consensus 32 ----~~~-~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~~- 105 (371)
+++ +.|||+|+++|++|++++||+|.||+++++|+ +|+||+||+|||++++++|||+|||+||||++|++++
T Consensus 82 ~~~~~~l~~~dtp~~~~~~~~a~~aaGg~l~aa~~v~~g~--~a~~ppGG~HHA~~~~a~GFC~fNnvAiAa~~l~~~g~ 159 (375)
T 1c3p_A 82 AREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGN--VAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGF 159 (375)
T ss_dssp HHHHHCCSSSSSCSSTTTTHHHHHHHHHHHHHHHHHHTTC--EEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHHHTTC
T ss_pred HhhccccCCCCcccChhHHHHHHHHhhHHHHHHHHHHcCC--ceeecCcccceeeeccCCCceeecHHHHHHHHHHHhCC
Confidence 135 57999999999999999999999999999997 8999999999999999999999999999999999886
Q ss_pred CcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCccc-CCCCcceEEeecCCCCCChHHHHHHHHHHH
Q 017484 106 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIG-EREGKFYAINVPLKDGIDDTSFTRLFKTII 184 (371)
Q Consensus 106 ~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~~G-~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi 184 (371)
+||+|||||||||||||++||+|++|||+|+|+++..||||||..+++| .++|++|++|||||+|++|++|+.+|+++|
T Consensus 160 ~RV~IvD~DvHHGnGtq~iF~~dp~Vl~~SiH~~~~~ffPgtG~~~e~G~~g~g~g~~vNvPL~~g~~D~~yl~a~~~~l 239 (375)
T 1c3p_A 160 KRILYIDLDAHHCDGVQEAFYDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSL 239 (375)
T ss_dssp CCEEEEECSSSCCHHHHHHHTTCSSEEEEEEEECTTTSTTSSSCCTTCCCCGGGTTSEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHhccCCCEEEEecccCCCCCCCCCCCccccCCcCCCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999988999999999999 999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCCCCC
Q 017484 185 SKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELP 264 (371)
Q Consensus 185 ~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~~~~ 264 (371)
.|++++|+||+||+|||+|+|.+||||.|+||.+||++++++|+++..|+++++||||++.++++||++++++|+|.++|
T Consensus 240 ~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~vv~vleGGY~~~~l~~~~~~~~~~l~g~~~~ 319 (375)
T 1c3p_A 240 EIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVP 319 (375)
T ss_dssp HHHHHHCCCSEEEEECCSTTBTTCTTCSCCBCHHHHHHHHHHHHHHHCSCEEECCCCCCHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHHhccceEEEECCCCChHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhC-CCCCC---CC-CCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 017484 265 NEIPENEYIKYFA-PECSL---RI-PNGHIENLNSKSYLSTIKMQVLENLRSI 312 (371)
Q Consensus 265 ~~iP~~~~~~~~~-p~~~l---~~-~~~~~~n~n~~~~l~~i~~~i~~~l~~l 312 (371)
+.||+ .|.+++. .+++. .+ ++.++..+++......++..|.+.++.|
T Consensus 320 ~~lp~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~ 371 (375)
T 1c3p_A 320 EKLNN-KAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLEKA 371 (375)
T ss_dssp SSCCH-HHHHHHHHSCCCCSSTTCCCGGGGGCSSCCCCCCCCCHHHHHHHHHH
T ss_pred ccCCH-HHHHHHHhcCcccccCCCChHHhhhhhccCCCCCchHHHHHHHHHHH
Confidence 99996 4555443 22321 22 2235555555544455555555555544
No 5
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=100.00 E-value=2.2e-77 Score=596.49 Aligned_cols=287 Identities=24% Similarity=0.359 Sum_probs=259.8
Q ss_pred eEEEEEcCCcccccCCCC----------------CCCCchhh--------------------------------------
Q 017484 6 KISYFYDGDVGSVYFGPN----------------HPMKPHRL-------------------------------------- 31 (371)
Q Consensus 6 ~v~y~~~~~~~~~~~g~~----------------hP~~p~R~-------------------------------------- 31 (371)
+++|+||+++..|.+|++ |||+|.|+
T Consensus 2 ~t~~~y~~~~~~h~~~~~~~~~~~~g~~~~~~~~Hpe~p~R~~~i~~~l~~~gl~~~~~~~~p~~a~~~~l~~vH~~~Yv 81 (369)
T 1zz1_A 2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHL 81 (369)
T ss_dssp CEEEECCGGGGGCCCCSSSSSCCBTTTTBCCCSSCTTCTHHHHHHHHHHHHTTGGGGSEECCCCCCCHHHHHTTSCHHHH
T ss_pred eEEEEEchHHcccCCCCcccccccccccccccCCCCCCHHHHHHHHHHHHhcCCCccceEeCCCcCCHHHHHHhccHHHH
Confidence 689999999999999998 99999998
Q ss_pred ------------cccCC-CCCCChhHHHHHHHHHhHHHHHHHHHHccccc--eeeeccCCCCCcccCCCccchHHhHHHH
Q 017484 32 ------------YNLGE-DCPVFENLFEFCQIYAGGTIDAARRLNNQLCD--IAINWAGGLHHAKKCEASGFCYINDLVL 96 (371)
Q Consensus 32 ------------~~~~~-D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~--~Ain~~GG~HHA~~~~a~GFC~~Ndiai 96 (371)
+.++. |||+++++|++|++++||+|.|++++++|+++ +|++|+|| |||++++++|||+|||+||
T Consensus 82 ~~l~~~~~~~~~~~l~~~dtp~~~~~~~~a~~aaG~~l~aa~~v~~g~~~~afa~~rppG-HHA~~~~a~GFC~fNnvAi 160 (369)
T 1zz1_A 82 ENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPG-HHAPHNAAMGFCIFNNTSV 160 (369)
T ss_dssp HHHHHHHHSTTCEECSSSSCEECTTTHHHHHHHHHHHHHHHHHHHTTSCSEEEECCSSCC-TTCCTTCCBTTBSSCHHHH
T ss_pred HHHHHhCccccceecCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEecCCc-cCcCCCCCCCchHhhHHHH
Confidence 12456 99999999999999999999999999999876 46889999 9999999999999999999
Q ss_pred HHHHHHHhC--CcEEEEeccccCccccccccccCCcEEEEeccccCCCCCC-CCCCCCcccCCCCcceEEeecCCCCCCh
Q 017484 97 GILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFP-GTGDVKEIGEREGKFYAINVPLKDGIDD 173 (371)
Q Consensus 97 ai~~ll~~~--~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffP-gtG~~~~~G~~~G~~~~vNvPL~~G~~D 173 (371)
||++|++++ +||+|||||||||||||++||+|++|||+|+|+++ ||| |||..+++|.++|+++++|||||+|++|
T Consensus 161 Aa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~--~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~d 238 (369)
T 1zz1_A 161 AAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHL--CFPPDSGYSTERGAGNGHGYNINVPLPPGSGN 238 (369)
T ss_dssp HHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETT--SSSTTCCCTTCCCCGGGTTCEEEEEECTTCBH
T ss_pred HHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCC--CCCCCCCcccccCCCCCCceEEeeecCCCCCH
Confidence 999999874 89999999999999999999999999999999996 999 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhc-----CCCeEEEccCCCCchhhH
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF-----NLPLLVTGGGGYTKENVA 248 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~-----~~pvl~l~gGGY~~~~~a 248 (371)
++|+.+|+++|.|++++|+||+||+|||+|+|.+||||.|+||.+||.+++++|+++ ++|+++++||||++++++
T Consensus 239 ~~yl~~~~~~v~p~l~~f~PdlIvvsaG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~~~~~g~vv~vleGGY~~~~l~ 318 (369)
T 1zz1_A 239 AAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLP 318 (369)
T ss_dssp HHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHHHHSTTCEEEEECCCCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCccCCCCCCCCCcccCHHHHHHHHHHHHHHHHHhCCCCEEEEECCCCCccHHH
Confidence 999999999999999999999999999999999999999999999999999998764 799999999999999999
Q ss_pred HHHHHHHhhhhCCCCCCCCCCchhhhhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHh
Q 017484 249 RCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENL 309 (371)
Q Consensus 249 r~~~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l 309 (371)
+||+++++.|+|.++ ...|.+++++- .+.+...++..++.+++.+.|
T Consensus 319 ~~~~~~~~~l~g~~~-~~~p~~~~~~~-------------~~~~~~~~~~~~~i~~~~~~~ 365 (369)
T 1zz1_A 319 FCGLAVIEELTGVRS-LPDPYHEFLAG-------------MGGNTLLDAERAAIEEIVPLL 365 (369)
T ss_dssp HHHHHHHHHHHCCCC-CCCTTHHHHHT-------------TCCCSCCHHHHHHHHTTGGGG
T ss_pred HHHHHHHHHHhCCCC-CCCchhHHHhh-------------ccccchHHHHHHHHHHHHHHh
Confidence 999999999999887 55565555542 233334455566555555544
No 6
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=100.00 E-value=2.3e-77 Score=604.29 Aligned_cols=306 Identities=22% Similarity=0.381 Sum_probs=269.4
Q ss_pred CCCeEEEEEcCCcccccCCCC----CCCCchhh------------------------------------c----------
Q 017484 3 SKDKISYFYDGDVGSVYFGPN----HPMKPHRL------------------------------------Y---------- 32 (371)
Q Consensus 3 ~~~~v~y~~~~~~~~~~~g~~----hP~~p~R~------------------------------------~---------- 32 (371)
.+.+++++||+++..|.++.+ |||+|.|+ |
T Consensus 6 p~~~Tg~vyd~~~l~H~~~~g~~~~HPE~P~Rl~~i~~~L~~~gl~~~~~~~~p~~At~eeL~~vHs~~Yv~~~~~~~~~ 85 (413)
T 2vqm_A 6 PRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLN 85 (413)
T ss_dssp CCSSEEEECCGGGCSCCCTTC-------CCCHHHHHHHHHHHHTHHHHSEEECCCCCCHHHHTTTSCHHHHHHHHSCGGG
T ss_pred CCCeEEEEEcHHHhccCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCeEeCCCCCCHHHHHHhCCHHHHHHHhcCchh
Confidence 356899999999999997654 99999998 1
Q ss_pred -------------------------ccCCCCCCCh-hHHHHHHHHHhHHHHHHHHHHcccccee--eeccCCCCCcccCC
Q 017484 33 -------------------------NLGEDCPVFE-NLFEFCQIYAGGTIDAARRLNNQLCDIA--INWAGGLHHAKKCE 84 (371)
Q Consensus 33 -------------------------~~~~D~p~f~-~l~~~~~~~aGgsl~aa~~l~~g~~~~A--in~~GG~HHA~~~~ 84 (371)
.++.|+.+.. .+++.+++++|++|.|++++++|+++.| ++++|| |||++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dt~~~~~~s~~aA~laaG~~l~a~~~v~~g~~~~afa~vrppG-HHA~~~~ 164 (413)
T 2vqm_A 86 RQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPG-HHAEEST 164 (413)
T ss_dssp GCC----HHHHHHHHHEEECTTSCEEECTTSTHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCCSCC-TTCBTTB
T ss_pred hhHhhhhhhccchhhhhhccccCCcCccCCccccchhHHHHHHHHHHHHHHHHHHHhcCCccceeeeccccc-ccCcCCC
Confidence 1123443333 6788899999999999999999988765 456666 9999999
Q ss_pred CccchHHhHHHHHHHHHHHhC--CcEEEEeccccCccccccccccCCcEEEEeccccCC-CCCCCCCCCCcccCCCCcce
Q 017484 85 ASGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGD-LFFPGTGDVKEIGEREGKFY 161 (371)
Q Consensus 85 a~GFC~~Ndiaiai~~ll~~~--~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~-~ffPgtG~~~~~G~~~G~~~ 161 (371)
++|||||||+||||++|++.+ +||||||||||||||||++||+|++|||+|+|++++ .||||||..+++|.++|.+|
T Consensus 165 a~GFC~~Nnvaiaa~~~~~~~~~~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~f~pgtG~~~e~G~g~g~g~ 244 (413)
T 2vqm_A 165 PMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGF 244 (413)
T ss_dssp CBTTBSSCHHHHHHHHHHHHSCCSCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGCSTTCCCCTTCCCSGGGTTC
T ss_pred CCCccccchHHHHHHHHHHhcCCCeEEEEecccCCCccHHHHHhcCcccccccchhccCCCCCCCCCCHHHcCCCccccc
Confidence 999999999999999998874 899999999999999999999999999999999843 49999999999999999999
Q ss_pred EEeecCCC----CCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCC--CcCcceecCHHHHHHHHHHHHhc-CCCe
Q 017484 162 AINVPLKD----GIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAG--DRLGCFNLSIDGHAECVRFVKKF-NLPL 234 (371)
Q Consensus 162 ~vNvPL~~----G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~g--Dplg~~~Lt~~g~~~~~~~l~~~-~~pv 234 (371)
++|+||+. +++|++|+.+|+++|.|++++|+||+||+|||||++.+ ||||.|+||.++|++++++|+++ ++|+
T Consensus 245 ~~n~pl~~g~~~~~~D~~y~~~~~~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~ 324 (413)
T 2vqm_A 245 NVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRI 324 (413)
T ss_dssp EEEEEECSCSSSCCCHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCE
T ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 99999874 57899999999999999999999999999999999999 66999999999999999999998 8999
Q ss_pred EEEccCCCCchhhHHHHHHHHhhhhCCCCCCCCCCchhhhhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCC
Q 017484 235 LVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQH 314 (371)
Q Consensus 235 l~l~gGGY~~~~~ar~~~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l~~l~~ 314 (371)
+++|||||+++++++||++++++|+|.+++ .+|+.. ....+|.|+.++|+++++...++|+.|+.
T Consensus 325 v~vleGGY~~~~l~~~~~~~~~~l~g~~~~-~~p~~~--------------~~~~p~~~~~~~~~~v~~~~~~~W~~l~~ 389 (413)
T 2vqm_A 325 VLALEGGHDLTAICDASEACVSALLGNELD-PLPEKV--------------LQQRPNANAVRSMEKVMEIHSKYWRCLQR 389 (413)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTTCCCC-CCCHHH--------------HHCCCCHHHHHHHHHHHHHHHTTCGGGTS
T ss_pred EEEeCcCCChHHHHHHHHHHHHHHcCCCCC-CCChhh--------------hhcCCChHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999998875 355411 11356889999999999999999999999
Q ss_pred CCCcccccCC
Q 017484 315 APSVQMQEVP 324 (371)
Q Consensus 315 apsvq~~~~p 324 (371)
+|+++++.++
T Consensus 390 ~~~~~~~~~~ 399 (413)
T 2vqm_A 390 TTSTAGRSLI 399 (413)
T ss_dssp CCCCTTSCHH
T ss_pred chhhcCcCcc
Confidence 9999998754
No 7
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=100.00 E-value=2.2e-73 Score=561.34 Aligned_cols=224 Identities=23% Similarity=0.359 Sum_probs=214.4
Q ss_pred CCCCCCChhHHHHHHHHHhHHHHHHHHHHccc-cceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHh-CCcEEEEe
Q 017484 35 GEDCPVFENLFEFCQIYAGGTIDAARRLNNQL-CDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKY-HARVLYID 112 (371)
Q Consensus 35 ~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~-~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~-~~RVliiD 112 (371)
+.|||+++++|++|++++||+|.|++++++|+ ..+|++|+|| |||++++++|||||||+||||++|+++ .+||+|||
T Consensus 115 d~dt~~~~~~~~aa~~aaG~~l~a~~~v~~g~~~afal~rppG-HHA~~~~a~GFC~~NnvaiAa~~l~~~g~~RV~ivD 193 (341)
T 3q9b_A 115 AAETAISPGTWEAALSSMASAIDGADLIAAGHKAAFSLCRPPG-HHAGIDMFGGYCFINNAAVAAQRLLDKGAKKIAILD 193 (341)
T ss_dssp BTTCCBCTTHHHHHHHHHHHHHHHHHHHHHTCSEEEECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHHHTTCSCEEEEE
T ss_pred CCCCCcChhHHHHHHHHHHHHHHHHHHHHhCCCceEecCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHcCCCeEEEEe
Confidence 46999999999999999999999999999985 5688999999 999999999999999999999999998 59999999
Q ss_pred ccccCccccccccccCCcEEEEeccccCCCCCCC-CCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHHHHHHHhc
Q 017484 113 IDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPG-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETY 191 (371)
Q Consensus 113 ~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPg-tG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f 191 (371)
||||||||||++||+|++|||+|+|+++..|||+ ||..+++|.++|++|++|||||+|++|++|+.+|++++ +.+++|
T Consensus 194 ~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvpL~~g~~d~~y~~~~~~~l-~~l~~f 272 (341)
T 3q9b_A 194 VDFHHGNGTQDIFYERGDVFFASLHGDPAEAFPHFLGYAEETGKGAGAGTTANYPMGRGTPYSVWGEALTDSL-KRIAAF 272 (341)
T ss_dssp CSSSCCHHHHHHHTTCTTEEEEEEEECGGGSTTCSSCCTTCCCCGGGTTCEEEEEECTTCBHHHHHHHHHHHH-HHHHHH
T ss_pred cCCCCCcchhHHhcCCCCEEEEeccCCCccCCCCCCCcccccCCCCCCceeEeeecCCCCChHHHHHHHHHHH-HHHHhh
Confidence 9999999999999999999999999998779999 99999999999999999999999999999999999976 678999
Q ss_pred CCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhC
Q 017484 192 APGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLD 260 (371)
Q Consensus 192 ~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg 260 (371)
+||+||+|||+|++.+||||.|+||.+||++|+++|+++++|+++++||||+++++++|+...+..+.|
T Consensus 273 ~Pd~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~l~~~~~~~v~vleGGY~~~~l~~~~~~~l~g~~~ 341 (341)
T 3q9b_A 273 GAEAIVVSLGVDTFEQDPISFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEIGLNVANVLKGVAG 341 (341)
T ss_dssp TCSCEEEEECCTTBTTCTTCCCBBCTTHHHHHHHHHHTTSSCEEEEECCCCCCTTHHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCccccCCCCCCCccCCHHHHHHHHHHHHHhCCCEEEEECCCCChHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999998877643
No 8
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=4.9e-73 Score=562.12 Aligned_cols=224 Identities=29% Similarity=0.477 Sum_probs=216.1
Q ss_pred CCCCCCChhHHHHHHHHHhHHHHHHHHHHccc-cceeeeccCCCCCcccCCCccchHHhHHHHHHHHHHHhCCcEEEEec
Q 017484 35 GEDCPVFENLFEFCQIYAGGTIDAARRLNNQL-CDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDI 113 (371)
Q Consensus 35 ~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~-~~~Ain~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~~~RVliiD~ 113 (371)
+.|||+++++|++|++++|++|.||+++++|+ ..+|++|+|| |||++++++||||||||||||++|+++.+||+||||
T Consensus 134 d~Dtpv~~~~~~aa~~aaG~~l~aa~~v~~g~~~afal~rPpG-HHA~~~~a~GFC~fNnvAiAa~~l~~~~~RV~ivD~ 212 (362)
T 3men_A 134 DGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPG-HHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDT 212 (362)
T ss_dssp BTTCCBCTTHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCC-TTCBTTBBBTTBSSCHHHHHHHHHTTTCSCEEEEEC
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCceEEeCCCCC-CCCCCCCCCCccccCHHHHHHHHHHHcCCeEEEEeC
Confidence 46999999999999999999999999999985 5688999998 999999999999999999999999999999999999
Q ss_pred cccCccccccccccCCcEEEEeccccCCCCCCC-CCCCCcccCCCCcceEEeecCCCCCChHHHHHHHHHHHHHHHHhcC
Q 017484 114 DVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPG-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYA 192 (371)
Q Consensus 114 DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPg-tG~~~~~G~~~G~~~~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~ 192 (371)
|||||||||++||+|++|||+|||+++..|||+ ||..+++|.++|++|++|||||+|++|++|+.+|++++ +++++|+
T Consensus 213 DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~~yl~~~~~~l-~~l~~f~ 291 (362)
T 3men_A 213 DMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDAL-RELRRFA 291 (362)
T ss_dssp SSSCCHHHHHHTTTCSSEEEEEEEECCTTSTTCSSCCTTCCCSGGGTTSEEEEEECTTBCHHHHHHHHHHHH-HHHHHHC
T ss_pred cCCCchhHhHHhcCCCCEEEEEecCCCccCCCCCCCccccccCCCCCceeEeeccCCCCChHHHHHHHHHHH-HHHHhcC
Confidence 999999999999999999999999998789999 99999999999999999999999999999999999976 6789999
Q ss_pred CCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhC
Q 017484 193 PGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLD 260 (371)
Q Consensus 193 Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg 260 (371)
||+||+|||+|++.+||||.|+||.+||++++++|+++++|+++++||||+++++++|+...+..|.+
T Consensus 292 PdlIvvsaG~Da~~~Dplg~l~lt~~~~~~~~~~l~~~~~~~v~vleGGY~~~~l~~~~~a~l~~l~~ 359 (362)
T 3men_A 292 PDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFFGGFGA 359 (362)
T ss_dssp CSEEEEEECSTTBTTCTTCCBCBCHHHHHHHHHHHHTTCCCEEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEECcccCcCCCCCCCccCCHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988875
No 9
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=100.00 E-value=4.8e-73 Score=570.38 Aligned_cols=295 Identities=22% Similarity=0.384 Sum_probs=261.2
Q ss_pred CeEEEEEcCCccccc----CCCCCCCCchhh------------------------------------cc-----------
Q 017484 5 DKISYFYDGDVGSVY----FGPNHPMKPHRL------------------------------------YN----------- 33 (371)
Q Consensus 5 ~~v~y~~~~~~~~~~----~g~~hP~~p~R~------------------------------------~~----------- 33 (371)
.+++|+||+++..|. +++.|||+|.|+ |-
T Consensus 36 ~~t~~vyd~~~l~H~~~~~~~~~HPE~P~Rl~~i~~~L~~~Gl~~~~~~~~p~~At~eeL~~vHs~~YI~~~~~~~l~~~ 115 (421)
T 2pqp_A 36 FTTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHVLLYGTNPLSRL 115 (421)
T ss_dssp TCEEEECCGGGGGCCCTTCCTTSCSSCTHHHHHHHHHHHHTTCGGGSEEECCCCCCHHHHTTTSCHHHHHHHHCCTTCSC
T ss_pred CeEEEEECHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHhcCCcccCeeeCCCCCCHHHHHhcCCHHHHHhhhcchhhhh
Confidence 478999999999999 688999999998 20
Q ss_pred -------------------------cCCCCCCC-hhHHHHHHHHHhHHHHHHHHHHccccc--eeeeccCCCCCcccCCC
Q 017484 34 -------------------------LGEDCPVF-ENLFEFCQIYAGGTIDAARRLNNQLCD--IAINWAGGLHHAKKCEA 85 (371)
Q Consensus 34 -------------------------~~~D~p~f-~~l~~~~~~~aGgsl~aa~~l~~g~~~--~Ain~~GG~HHA~~~~a 85 (371)
++.|++++ ...|+.+++++|++|.|+++++.|+++ +|++++|| |||+++++
T Consensus 116 ~~~~~~~~g~~~~~~~~~~p~gg~~~D~Dt~~~~~~s~~aa~~aaG~~~~a~~~v~~g~~~~afa~~rPpG-HHA~~~~a 194 (421)
T 2pqp_A 116 KLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPG-HHADHSTA 194 (421)
T ss_dssp CCCHHHHHHHHSCCCCEECTTSCEESSSSCEECTTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEECCSSCC-TTCBTTBC
T ss_pred hhhcccccccchhhhhhhccccCcCCCCCcccCCccHHHHHHHHHhHHHHHHHHHHcCccccceeeCCCCC-CCCCCCCC
Confidence 12355555 378999999999999999999999865 67788898 99999999
Q ss_pred ccchHHhHHHHHHHHHHHhC--CcEEEEeccccCccccccccccCCcEEEEeccccC-CCCCCCCCCCCcccCCCCcceE
Q 017484 86 SGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFG-DLFFPGTGDVKEIGEREGKFYA 162 (371)
Q Consensus 86 ~GFC~~Ndiaiai~~ll~~~--~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~-~~ffPgtG~~~~~G~~~G~~~~ 162 (371)
+|||+||||||||++|++++ +||+|||||||||||||++||+|++|||+|+|+++ ..||||||..+++|.+.|++|+
T Consensus 195 ~GFC~fNnvAiAa~~l~~~~~~~RV~ivD~DvHHGnGtq~iF~~dp~Vl~~S~H~~~~g~~yPgtG~~~e~G~g~g~g~~ 274 (421)
T 2pqp_A 195 MGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFN 274 (421)
T ss_dssp BTTBSSCHHHHHHHHHHHHSTTCCEEEEECSSSCCHHHHHHHTTCTTEEEEEEEECGGGTSTTCCCCTTCCCCGGGTTCE
T ss_pred CcchhhCHHHHHHHHHHHhcCCCeEEEEecCCCCChhHHHHhcCCCCEEEEecccCCCCCCCCCCCChhhccCCCCccce
Confidence 99999999999999999864 89999999999999999999999999999999985 3499999999999999999999
Q ss_pred EeecCCCC----CChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCC--cCcceecCHHHHHHHHHHHHhc-CCCeE
Q 017484 163 INVPLKDG----IDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGD--RLGCFNLSIDGHAECVRFVKKF-NLPLL 235 (371)
Q Consensus 163 vNvPL~~G----~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gD--plg~~~Lt~~g~~~~~~~l~~~-~~pvl 235 (371)
+||||+.| ++|++|+.+|+++|.|++++|+||+||+|||||++.+| |||.|+||.++|+++++.|+++ ++|++
T Consensus 275 vNvPl~~gl~~g~~d~~yl~~~~~~l~p~~~~F~PdlIvvsaG~Da~~gD~dpLg~~~lt~~~y~~~~~~l~~~a~grvv 354 (421)
T 2pqp_A 275 VNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVV 354 (421)
T ss_dssp EEEEECSCSSSCCBHHHHHHHHHHTHHHHHHHHCCSEEEEEECCTTBTTCCGGGCCCBBCHHHHHHHHHHHTTSGGGCEE
T ss_pred eccccCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCcccccccccccCCceeCHHHHHHHHHHHHHHcCCCEE
Confidence 99999754 78999999999999999999999999999999999987 9999999999999999999987 89999
Q ss_pred EEccCCCCchhhHHHHHHHHhhhhCCCCCCCCCCchhhhhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCCC
Q 017484 236 VTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHA 315 (371)
Q Consensus 236 ~l~gGGY~~~~~ar~~~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l~~l~~a 315 (371)
+++||||++.++++||..++.+|+|.+++ .+|... ....++.+..+.|+++++...+.|+-|+..
T Consensus 355 ~vlEGGY~l~~l~~~~~a~~~~L~g~~~~-~l~~~~--------------~~~~p~~~a~~~i~~v~~~~~~yW~~l~~~ 419 (421)
T 2pqp_A 355 LALEGGHDLTAICDASEACVAALLGNRVD-PLSEEG--------------WKQKPNLNAIRSLEAVIRVHSKYWGCMQRL 419 (421)
T ss_dssp EEECSCCCHHHHHHHHHHHHHHHTTCCCC-GGGCGG--------------GGSCCCHHHHHHHHHHHHHHTTTCGGGCC-
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCCCC-CCcccc--------------cccccCHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 99999999999999999999999997654 244311 114467778899999998888888766643
No 10
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=82.58 E-value=1.3 Score=38.75 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=42.1
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEE
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 237 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l 237 (371)
.+|.-+. |.+-...+.-|++. +-.++|++|||..|. |...+-+......+.+.+..+++.++..+.+++++
T Consensus 53 viN~Gi~-G~tt~~~l~r~~~~----v~~~~Pd~vvi~~G~ND~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~iil~ 124 (209)
T 4hf7_A 53 YIGRGIS-GQTSYQFLLRFRED----VINLSPALVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILT 124 (209)
T ss_dssp EEEEECT-TCCHHHHHHHHHHH----TGGGCCSEEEECCCHHHHTTSSSSCCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEeccC-cccHHHHHHHHHHH----HHhcCCCEEEEEeCCCcCccccccccHHHHHHHHHHhhHHHhccCceEEEE
Confidence 3565553 33334444444432 345799999999998 66544332233334455667777777767766654
No 11
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=75.60 E-value=5.4 Score=33.58 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=29.9
Q ss_pred HHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEE
Q 017484 186 KVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 237 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l 237 (371)
..+...+||+|||+.|. |...+-+ ..-..+.+.++++.+++.+.+++++
T Consensus 56 ~~~~~~~pd~Vii~~G~ND~~~~~~---~~~~~~~l~~li~~~~~~~~~vil~ 105 (190)
T 1ivn_A 56 ALLKQHQPRWVLVELGGNDGLRGFQ---PQQTEQTLRQILQDVKAANAEPLLM 105 (190)
T ss_dssp HHHHHHCCSEEEEECCTTTTSSSCC---HHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhcCCCEEEEEeeccccccCCC---HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 44556799999999998 4432111 1112344556677777767666665
No 12
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=73.45 E-value=3.9 Score=34.13 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=38.3
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEE
Q 017484 163 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVT 237 (371)
Q Consensus 163 vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l 237 (371)
+|... .|.+-...+..++ ..+..++||+||+..|. |...+-+. .-..+.+.++++.+++.+.+++++
T Consensus 42 ~n~g~-~G~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~~~~---~~~~~~~~~~i~~~~~~~~~vvl~ 109 (185)
T 3hp4_A 42 INASI-SGETSGGALRRLD----ALLEQYEPTHVLIELGANDGLRGFPV---KKMQTNLTALVKKSQAANAMTALM 109 (185)
T ss_dssp EECCC-TTCCHHHHHHHHH----HHHHHHCCSEEEEECCHHHHHTTCCH---HHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EECCc-CCccHHHHHHHHH----HHHhhcCCCEEEEEeecccCCCCcCH---HHHHHHHHHHHHHHHHcCCeEEEE
Confidence 44444 2333444554444 34556899999999997 44332211 112334555777777777677665
No 13
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=70.85 E-value=3.4 Score=34.93 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=38.9
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEc
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTG 238 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~ 238 (371)
.+|.-+. |.+-..++..++ ..+..++||+|||..|. |...+...-...-..+.+.++++.+++.+.+++++.
T Consensus 49 v~n~g~~-G~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vil~~ 121 (204)
T 3p94_A 49 FVDRGIS-GQTTSEMLVRFR----QDVINLKPKAVVILAGINDIAHNNGVIALENVFGNLVSMAELAKANHIKVIFCS 121 (204)
T ss_dssp EEEEECT-TCCHHHHHHHHH----HHTGGGCEEEEEEECCHHHHTTTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred eEEcccC-cccHHHHHHHHH----HHHHhCCCCEEEEEeecCccccccCCCCHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3566553 333444444443 33445899999999998 554432100111122334456667776666666653
No 14
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=65.09 E-value=6.7 Score=31.04 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHH-----HHHHHHHHHHhcCCCeEEE
Q 017484 180 FKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSID-----GHAECVRFVKKFNLPLLVT 237 (371)
Q Consensus 180 f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~-----g~~~~~~~l~~~~~pvl~l 237 (371)
.+++|..++.+|..++=|++++.|...+.++|.+-+... ...+.+++|++.++.+=++
T Consensus 33 ~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 33 TEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 367888889999999999999999999999999887443 4667788898887765444
No 15
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=65.06 E-value=41 Score=32.85 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=33.4
Q ss_pred HHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEEc
Q 017484 185 SKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVTG 238 (371)
Q Consensus 185 ~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l~ 238 (371)
..++...+||+|||.+|. |...+-+ ..-..+.+.++++.+++. +.||+++.
T Consensus 237 ~~~l~~~~pdlVvI~lGtND~~~~~~---~~~~~~~l~~li~~ir~~~P~a~Illv~ 290 (385)
T 3skv_A 237 ARLIRDLPADLISLRVGTSNFMDGDG---FVDFPANLVGFVQIIRERHPLTPIVLGS 290 (385)
T ss_dssp HHHHHHSCCSEEEEEESHHHHTTTCC---TTTHHHHHHHHHHHHHTTCSSSCEEEEE
T ss_pred HHHHhccCCCEEEEEeeccCCCCCCC---HHHHHHHHHHHHHHHHHHCCCCcEEEEc
Confidence 344566899999999998 5544311 112245667788888876 56777664
No 16
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=65.04 E-value=24 Score=29.83 Aligned_cols=59 Identities=10% Similarity=0.258 Sum_probs=36.0
Q ss_pred eEEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHH----HHHHHHHHhcC
Q 017484 161 YAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGH----AECVRFVKKFN 231 (371)
Q Consensus 161 ~~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~----~~~~~~l~~~~ 231 (371)
...|.....+.+....+..++ ..+...+||+||+..|..-. ..+.+.| .++++.+++.+
T Consensus 47 ~v~~~~~~~~~~~~~~~~~~~----~~~~~~~pd~Vvi~~G~ND~--------~~~~~~~~~~l~~ii~~l~~~~ 109 (200)
T 4h08_A 47 YVGRLSNSKSVGDPALIEELA----VVLKNTKFDVIHFNNGLHGF--------DYTEEEYDKSFPKLIKIIRKYA 109 (200)
T ss_dssp EEEEEEESCCTTCHHHHHHHH----HHHHHSCCSEEEECCCSSCT--------TSCHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEeccCCccHHHHHHHHH----HHHhcCCCCeEEEEeeeCCC--------CCCHHHHHHHHHHHHHHHhhhC
Confidence 344555555566666655554 34556899999999998422 2344444 45666666654
No 17
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=61.42 E-value=16 Score=31.45 Aligned_cols=70 Identities=11% Similarity=0.202 Sum_probs=40.4
Q ss_pred eEEeecCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEecCC-CCCCCCcCcceecCHHH----HHHHHHHHHhcCCCe
Q 017484 161 YAINVPLKDGIDDTSFTRLFKTIISKVVET-YAPGAIVLQCGA-DSLAGDRLGCFNLSIDG----HAECVRFVKKFNLPL 234 (371)
Q Consensus 161 ~~vNvPL~~G~~D~~y~~~f~~vi~~~~~~-f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g----~~~~~~~l~~~~~pv 234 (371)
..+|..+. |.+-...+..++. ++.. .+||+|||..|. |..... ....+.+. +.++++.+++.+.++
T Consensus 45 ~v~n~g~~-G~~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~~~---~~~~~~~~~~~~l~~~i~~~~~~~~~v 116 (240)
T 3mil_A 45 DILQRGFK-GYTSRWALKILPE----ILKHESNIVMATIFLGANDACSAG---PQSVPLPEFIDNIRQMVSLMKSYHIRP 116 (240)
T ss_dssp EEEEEECT-TCCHHHHHHHHHH----HHHHCCCEEEEEEECCTTTTSSSS---TTCCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred EEEecCcC-cccHHHHHHHHHH----HhcccCCCCEEEEEeecCcCCccC---CCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 34555553 3344455555554 3343 699999999998 554321 12234444 445667777777766
Q ss_pred EEEc
Q 017484 235 LVTG 238 (371)
Q Consensus 235 l~l~ 238 (371)
+++.
T Consensus 117 il~~ 120 (240)
T 3mil_A 117 IIIG 120 (240)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6664
No 18
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=57.58 E-value=15 Score=33.20 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=29.1
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcce
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCF 213 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~ 213 (371)
.+|.-.. |.+-...+..+..++.. ...+||+|+|..|. |...+.|++.+
T Consensus 61 v~N~G~~-G~tt~~~~~~~~~~l~~--~~~~pd~V~I~~G~ND~~~~~~~~~~ 110 (274)
T 3bzw_A 61 PFVYGIS-GRQWDDVPRQAEKLKKE--HGGEVDAILVFMGTNDYNSSVPIGEW 110 (274)
T ss_dssp EEECCCT-TCCGGGHHHHHHHHHHH--HTTTCCEEEEECCHHHHHTTCCCCCS
T ss_pred EEEeecC-CCCHHHHHHHHHHHHhc--cCCCCCEEEEEEecccCcccCCCccc
Confidence 3554443 23333455556553321 23799999999998 77666666543
No 19
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=53.86 E-value=16 Score=36.16 Aligned_cols=61 Identities=15% Similarity=0.246 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCC
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 242 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY 242 (371)
.++...|++.+ |-+.+|+-..||+-.|-.++..+. .+...+-+..+++.+.+++++-|||-
T Consensus 25 ~~~~~~~~~~~-~yi~~~~~~~iViK~GG~~l~~~~-------~~~~~~~i~~l~~~g~~vvlVhggg~ 85 (456)
T 3d2m_A 25 DSFVAHFREAA-PYIRQMRGTTLVAGIDGRLLEGGT-------LNKLAADIGLLSQLGIRLVLIHGAYH 85 (456)
T ss_dssp CCHHHHHHHHH-HHHHHHTTCEEEEEECGGGGTSTH-------HHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred hHHHHHHHHhH-HHHHHhcCCEEEEEEChHHhcCch-------HHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 57889999885 778999999999999998886431 33444445556666777777777774
No 20
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=53.45 E-value=4.5 Score=34.20 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=30.1
Q ss_pred HHHhcCCCEEEEecCC-CCCCCCcCcc---eecCHHHH----HHHHHHHHhcCCCeEEE
Q 017484 187 VVETYAPGAIVLQCGA-DSLAGDRLGC---FNLSIDGH----AECVRFVKKFNLPLLVT 237 (371)
Q Consensus 187 ~~~~f~Pd~Ivvq~G~-D~~~gDplg~---~~Lt~~g~----~~~~~~l~~~~~pvl~l 237 (371)
.+...+||+|||+.|. |.....+.+. ...+.+.| .++++.+++.+.+++++
T Consensus 78 ~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~vil~ 136 (216)
T 3rjt_A 78 DVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLL 136 (216)
T ss_dssp HTGGGCCSEEEEECCHHHHHHHHHSTTCGGGCCCHHHHHHHHHHHHHHHGGGSSEEEEE
T ss_pred HHhhcCCCEEEEEeeccccchhhccccccccCCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 3456799999999997 5443211111 13344444 44566666667777666
No 21
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=51.12 E-value=3.6 Score=32.50 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHH----HHHHHHHHHHhcCCCeEE
Q 017484 181 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKFNLPLLV 236 (371)
Q Consensus 181 ~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~----g~~~~~~~l~~~~~pvl~ 236 (371)
+++|..++.+|.-++=|++++.|...+.++|.+-+... ...+.+.+|++.+..+=+
T Consensus 37 ~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEv 96 (100)
T 2qsw_A 37 LPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRVETEV 96 (100)
T ss_dssp SCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred chHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCCEEEE
Confidence 45778888999999999999999999999999887543 456678888887765533
No 22
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=49.39 E-value=43 Score=28.42 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 180 FKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 180 f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
++.++.. +.+.+||+||+ +| |.. ....+.+.+.++.+.+++.+.|++++. |-..
T Consensus 21 ~~~~~~~-~~~~~~D~vi~-~G-Dl~------~~~~~~~~~~~~~~~l~~~~~pv~~v~-GNHD 74 (228)
T 1uf3_A 21 LEKFVKL-APDTGADAIAL-IG-NLM------PKAAKSRDYAAFFRILSEAHLPTAYVP-GPQD 74 (228)
T ss_dssp HHHHHTH-HHHHTCSEEEE-ES-CSS------CTTCCHHHHHHHHHHHGGGCSCEEEEC-CTTS
T ss_pred HHHHHHH-HhhcCCCEEEE-CC-CCC------CCCCCHHHHHHHHHHHHhcCCcEEEEC-CCCC
Confidence 4444433 44458998654 44 322 111234556677788877788987774 4444
No 23
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=48.86 E-value=13 Score=32.49 Aligned_cols=69 Identities=17% Similarity=0.236 Sum_probs=36.5
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEEc
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVTG 238 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l~ 238 (371)
.+|.-+. |.+-..++..++. .++...+||+|||..|..=.. ....-..+.+.++++.+++. +.+++++.
T Consensus 67 v~n~g~~-G~t~~~~~~~~~~---~~l~~~~pd~vvi~~G~ND~~----~~~~~~~~~l~~~i~~l~~~~p~~~ii~~~ 137 (232)
T 1es9_A 67 ALNFGIG-GDSTQHVLWRLEN---GELEHIRPKIVVVWVGTNNHG----HTAEQVTGGIKAIVQLVNERQPQARVVVLG 137 (232)
T ss_dssp EEEEECT-TCCHHHHHHHHHT---TTTTTCCCSEEEEECCTTCTT----SCHHHHHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred eEEeecc-cccHHHHHHHHhc---CccccCCCCEEEEEeecCCCC----CCHHHHHHHHHHHHHHHHHHCCCCeEEEec
Confidence 3565543 3333344433332 124457999999999984222 01111234455567777665 45666653
No 24
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A*
Probab=48.72 E-value=24 Score=29.86 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=26.4
Q ss_pred HHHHhcCC-CEEEEecCC-CCCCCCcCcceecCHHH----HHHHHHHHHhcC
Q 017484 186 KVVETYAP-GAIVLQCGA-DSLAGDRLGCFNLSIDG----HAECVRFVKKFN 231 (371)
Q Consensus 186 ~~~~~f~P-d~Ivvq~G~-D~~~gDplg~~~Lt~~g----~~~~~~~l~~~~ 231 (371)
..+..++| |+|||+.|. |... .+..+.+. +.++++.+++.+
T Consensus 76 ~~l~~~~p~d~vvi~~G~ND~~~-----~~~~~~~~~~~~l~~li~~~~~~~ 122 (216)
T 2q0q_A 76 SCLATHLPLDLVIIMLGTNDTKA-----YFRRTPLDIALGMSVLVTQVLTSA 122 (216)
T ss_dssp HHHHHHCSCSEEEEECCTGGGSG-----GGCCCHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHhCCCCCEEEEEecCcccch-----hcCCCHHHHHHHHHHHHHHHHHhc
Confidence 34556788 999999998 4432 12344444 455667777766
No 25
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=47.77 E-value=22 Score=30.53 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEE
Q 017484 171 IDDTSFTRLFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 237 (371)
Q Consensus 171 ~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l 237 (371)
..-...+..++. .+...+||+|||+.|. |...+ ...+.+.+.++++.+++. +.+++++
T Consensus 66 ~~~~~~~~~l~~----~l~~~~pd~vvi~~G~ND~~~~-----~~~~~~~l~~li~~i~~~~p~~~ii~~ 126 (215)
T 2vpt_A 66 WTIPQIASNINN----WLNTHNPDVVFLWIGGNDLLLN-----GNLNATGLSNLIDQIFTVKPNVTLFVA 126 (215)
T ss_dssp CCHHHHHHHHHH----HHHHHCCSEEEEECCHHHHHHH-----CCCCHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred hhHHHHHHHHHH----HhhccCCCEEEEEccccccCCC-----CChhHHHHHHHHHHHHHhCCCCEEEEE
Confidence 334445554443 3446799999999998 44322 234567888899988886 4555554
No 26
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=46.60 E-value=47 Score=29.21 Aligned_cols=42 Identities=17% Similarity=0.321 Sum_probs=24.8
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCC-CEEEEecCC-CCCC
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAP-GAIVLQCGA-DSLA 206 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~P-d~Ivvq~G~-D~~~ 206 (371)
.+|..+. |-+-..++.. ..+..++...+| |+|||+.|. |+..
T Consensus 35 v~N~gi~-G~tt~~~~~~--~r~~~~l~~~~~~d~ViI~~G~ND~~~ 78 (233)
T 1k7c_A 35 VVNDAVA-GRSARSYTRE--GRFENIADVVTAGDYVIVEFGHNDGGS 78 (233)
T ss_dssp EEECCCT-TCCHHHHHHT--THHHHHHHHCCTTCEEEECCCTTSCSC
T ss_pred EEecccC-CccHHHHHHc--ccHHHHHhhCCCCCEEEEEccCCCCCC
Confidence 3565553 3334445431 123455666666 999999999 6654
No 27
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=46.38 E-value=5.1 Score=32.13 Aligned_cols=54 Identities=7% Similarity=0.270 Sum_probs=44.4
Q ss_pred HHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCH----HHHHHHHHHHHhcCCCeE
Q 017484 182 TIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSI----DGHAECVRFVKKFNLPLL 235 (371)
Q Consensus 182 ~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~----~g~~~~~~~l~~~~~pvl 235 (371)
++|..++.+|.-++=|++++.|...+.++|.+-+.. ....+..++|++.++.+=
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vE 93 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHHVKVE 93 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHCCCEEE
Confidence 477888899999999999999999999999987754 345667888888776543
No 28
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=46.27 E-value=36 Score=29.60 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=25.6
Q ss_pred HHHHhcCC-CEEEEecCC-CCCCCCcCcceecCHHH----HHHHHHHHHhc
Q 017484 186 KVVETYAP-GAIVLQCGA-DSLAGDRLGCFNLSIDG----HAECVRFVKKF 230 (371)
Q Consensus 186 ~~~~~f~P-d~Ivvq~G~-D~~~gDplg~~~Lt~~g----~~~~~~~l~~~ 230 (371)
..+..++| |+|||..|. |.... ...+.+. +.++++.+++.
T Consensus 94 ~~l~~~~p~d~VvI~~GtND~~~~-----~~~~~~~~~~~l~~li~~ir~~ 139 (232)
T 3dci_A 94 VALSCHMPLDLVIIMLGTNDIKPV-----HGGRAEAAVSGMRRLAQIVETF 139 (232)
T ss_dssp HHHHHHCSCSEEEEECCTTTTSGG-----GTSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhCCCCCEEEEEeccCCCccc-----cCCCHHHHHHHHHHHHHHHHHh
Confidence 44566899 999999998 44332 2234444 44566777764
No 29
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=46.11 E-value=27 Score=28.66 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=35.4
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHH----HHHHHHhcCCCeEEE
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAE----CVRFVKKFNLPLLVT 237 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~----~~~~l~~~~~pvl~l 237 (371)
.+|.-.. |.+-..++..++ ..+...+||+||++.|..=... ....+.+.|.+ +++.++ +.+++++
T Consensus 42 v~n~g~~-G~~~~~~~~~~~----~~~~~~~pd~vvi~~G~ND~~~----~~~~~~~~~~~~l~~~i~~~~--~~~vi~~ 110 (195)
T 1yzf_A 42 VINAGMP-GDTTEDGLKRLN----KEVLIEKPDEVVIFFGANDASL----DRNITVATFRENLETMIHEIG--SEKVILI 110 (195)
T ss_dssp EEEEECT-TCCHHHHHHHHH----HHTGGGCCSEEEEECCTTTTCT----TSCCCHHHHHHHHHHHHHHHC--GGGEEEE
T ss_pred EEeCCCC-CCCHHHHHHHHH----HhhhhcCCCEEEEEeeccccCc----cCCCCHHHHHHHHHHHHHHhc--CCEEEEE
Confidence 3555553 334444444444 3345589999999999833321 12345555544 344444 5555555
Q ss_pred c
Q 017484 238 G 238 (371)
Q Consensus 238 ~ 238 (371)
.
T Consensus 111 ~ 111 (195)
T 1yzf_A 111 T 111 (195)
T ss_dssp C
T ss_pred c
Confidence 3
No 30
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=44.02 E-value=46 Score=31.05 Aligned_cols=58 Identities=19% Similarity=0.341 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCC-CCCCCcCcceecCHHHHHHHHHHHHhcC--CCeEEEcc
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVLQCGAD-SLAGDRLGCFNLSIDGHAECVRFVKKFN--LPLLVTGG 239 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D-~~~gDplg~~~Lt~~g~~~~~~~l~~~~--~pvl~l~g 239 (371)
++...+++.++.. +.+.+||+||+ +| | ..- ....+.+....+.++++++. +|++++.|
T Consensus 44 ~~~~~~l~~lv~~-~~~~~~D~vli-aG-D~l~d-----~~~~~~~~~~~~~~~l~~L~~~~pv~~i~G 104 (336)
T 2q8u_A 44 EELKKALDKVVEE-AEKREVDLILL-TG-DLLHS-----RNNPSVVALHDLLDYLKRMMRTAPVVVLPG 104 (336)
T ss_dssp HHHHHHHHHHHHH-HHHHTCSEEEE-ES-CSBSC-----SSCCCHHHHHHHHHHHHHHHHHSCEEECCC
T ss_pred HHHHHHHHHHHHH-HHHhCCCEEEE-CC-ccccC-----CCCCCHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 4566778877754 56679997765 44 4 221 11223333333444444443 78777643
No 31
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=43.95 E-value=56 Score=30.51 Aligned_cols=63 Identities=16% Similarity=0.379 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
.++...|++.+ |-+.+|+-..||+-.|-.++.... ..+...+-+..+++.+.+++++-|||-.
T Consensus 8 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~ 70 (300)
T 2buf_A 8 AQVAKVLSEAL-PYIRRFVGKTLVIKYGGNAMESEE------LKAGFARDVVLMKAVGINPVVVHGGGPQ 70 (300)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCEEEEEECCTTTTSSH------HHHHHHHHHHHHHHTTCEEEEEECCCHH
T ss_pred HHHHHHHHHHh-HHHHHhcCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCeEEEEECCcHH
Confidence 36788888876 668889999999999999987531 1223344444556667788888888754
No 32
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=42.56 E-value=31 Score=32.26 Aligned_cols=67 Identities=13% Similarity=0.269 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCc
Q 017484 171 IDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 244 (371)
Q Consensus 171 ~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~ 244 (371)
....++...|++.+ |-+++|+-..||+-.|-.++.... ..+.+.+.+..+++.+.+++++-|||-..
T Consensus 4 ~~~~~~~~~~~~a~-pyi~~~~~k~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~i 70 (299)
T 2ap9_A 4 LPTHIKAQVLAEAL-PWLKQLHGKVVVVKYGGNAMTDDT------LRRAFAADMAFLRNCGIHPVVVHGGGPQI 70 (299)
T ss_dssp SCHHHHHHHHHHHH-HHHHHHTTCEEEEEECTHHHHSHH------HHHHHHHHHHHHHTTTCEEEEEECCSHHH
T ss_pred CChhhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCcEEEEECCcHHH
Confidence 35678889999886 778999999999999987776421 12233444455555677777777777543
No 33
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=42.41 E-value=28 Score=34.49 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCchhhHHHHHHHHhh
Q 017484 180 FKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKENVARCWTVETGI 257 (371)
Q Consensus 180 f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~~~~ar~~~~~t~~ 257 (371)
+++.|..+.+.|+|++|+|.... -.+.||.+. .+.+.++ +.++||+.+--.||.-. ....+......
T Consensus 85 L~~~i~~~~~~~~P~~I~v~~TC~~~iIGdDi~----------~v~~~~~~~~~ipVi~v~~~Gf~~~-~~~G~~~a~~a 153 (460)
T 2xdq_A 85 LKRLCLEIKRDRNPSVIVWIGTCTTEIIKMDLE----------GLAPKLEAEIGIPIVVARANGLDYA-FTQGEDTVLAA 153 (460)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECHHHHHTTCCHH----------HHHHHHHHHHSSCEEEEECCTTTCC-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCHHHHHhhCHH----------HHHHHHhhccCCcEEEEecCCcccc-HHHHHHHHHHH
Confidence 46677788889999987776543 556666432 2344443 45899999999998853 44444444444
Q ss_pred hh
Q 017484 258 LL 259 (371)
Q Consensus 258 ll 259 (371)
++
T Consensus 154 l~ 155 (460)
T 2xdq_A 154 MA 155 (460)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 34
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=42.20 E-value=49 Score=31.77 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhc---CCCeEEEcc
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKF---NLPLLVTGG 239 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~---~~pvl~l~g 239 (371)
.+...+|+.++.. +.+-+||+||+ || |.. ....-+.+.+..+.+.++++ ++|++++.|
T Consensus 43 ~~~~~~l~~~v~~-~~~~~~D~Vli-aG-Dl~-----d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~G 103 (386)
T 3av0_A 43 KDIYDSFKLCIKK-ILEIKPDVVLH-SG-DLF-----NDLRPPVKALRIAMQAFKKLHENNIKVYIVAG 103 (386)
T ss_dssp HHHHHHHHHHHHH-HHTTCCSEEEE-CS-CSB-----SSSSCCHHHHHHHHHHHHHHHHTTCEEEECCC
T ss_pred HHHHHHHHHHHHH-HHHcCCCEEEE-CC-CCC-----CCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 3456778877754 45679998866 44 322 11222334444455555444 788877754
No 35
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=41.47 E-value=29 Score=33.54 Aligned_cols=68 Identities=18% Similarity=0.181 Sum_probs=39.3
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCC-CEEEEecCC-CCCCCCcCcceecCHH----HHHHHHHHHHhcCCCeE
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAP-GAIVLQCGA-DSLAGDRLGCFNLSID----GHAECVRFVKKFNLPLL 235 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~P-d~Ivvq~G~-D~~~gDplg~~~Lt~~----g~~~~~~~l~~~~~pvl 235 (371)
.+|.-+. |.+-..++.- ..+.+++..++| |+|||+.|. |...+ ...+.+ .+.++++.+++.+.+++
T Consensus 202 v~N~Gis-G~tt~~~l~~--~rl~~~l~~~~p~d~VvI~~G~ND~~~~-----~~~~~~~~~~~l~~ii~~lr~~~a~vi 273 (375)
T 2o14_A 202 VRNMASG-GQIARGFRND--GQLEAILKYIKPGDYFMLQLGINDTNPK-----HKESEAEFKEVMRDMIRQVKAKGADVI 273 (375)
T ss_dssp EEECCCT-TCCHHHHHHS--SHHHHHHTTCCTTCEEEEECCTGGGCGG-----GCCCHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred EEEeccC-CCcHhhhhhc--ccHHHHHHhCCCCCEEEEEEEccCCCcc-----CCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 5676553 3333344420 123455678899 999999998 54432 123333 45556677776666665
Q ss_pred EE
Q 017484 236 VT 237 (371)
Q Consensus 236 ~l 237 (371)
++
T Consensus 274 lv 275 (375)
T 2o14_A 274 LS 275 (375)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 36
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=40.98 E-value=86 Score=29.17 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHH---HHHHHHHhcCCCeEEEcc
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHA---ECVRFVKKFNLPLLVTGG 239 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~---~~~~~l~~~~~pvl~l~g 239 (371)
+++..+|+.++. .+.+.+||+||+ +| |..-. .+-+.+... +.++.++..++|++++.|
T Consensus 23 ~~~~~~~~~~~~-~~~~~~~D~vl~-~G-Dl~d~-----~~~~~~~~~~~~~~l~~l~~~~~~v~~v~G 83 (333)
T 1ii7_A 23 EEFAEAFKNALE-IAVQENVDFILI-AG-DLFHS-----SRPSPGTLKKAIALLQIPKEHSIPVFAIEG 83 (333)
T ss_dssp HHHHHHHHHHHH-HHHHTTCSEEEE-ES-CSBSS-----SSCCHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred HHHHHHHHHHHH-HHHhcCCCEEEE-CC-CcCCC-----CCCCHHHHHHHHHHHHHHHHCCCcEEEeCC
Confidence 456677777764 456789998765 44 33221 112333333 344445555789887754
No 37
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=39.69 E-value=53 Score=33.45 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecC-CCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCch
Q 017484 179 LFKTIISKVVETYAPGAIVLQCG-ADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 245 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G-~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~ 245 (371)
.+.+.|..+.+.|+|++|+|... .-.+.||.+.. +++.++. ++||+.+--.||.-.
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~elIGdDi~~----------v~~~~~~-~~pVi~v~tpgf~g~ 128 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAELLQDDPNG----------ISRALNL-PVPVVPLELPSYSRK 128 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGGSCCCHHH----------HHHHHTC-SSCEEECCCCTTTCC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcccHHH----------HHHHhcC-CCCEEEEECCCcCCc
Confidence 45556667788899997766655 67777875432 3333333 788888888888754
No 38
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=39.38 E-value=16 Score=28.69 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHH----HHHHHHHHHHhcCCCeEEE
Q 017484 181 KTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKFNLPLLVT 237 (371)
Q Consensus 181 ~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~----g~~~~~~~l~~~~~pvl~l 237 (371)
+++|..++.+|.-++=|++++.|...+.++|.+-+... ...+.+++|++.+..+=++
T Consensus 37 ~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 37 APLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp SCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 45778889999999999999999999999999877543 4566788888877655444
No 39
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=38.09 E-value=27 Score=29.84 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=37.0
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHHh---cCCCEEEEecCC-CCCC-CCcCcceecCHHH----HHHHHHHHHhcCCC
Q 017484 163 INVPLKDGIDDTSFTRLFKTIISKVVET---YAPGAIVLQCGA-DSLA-GDRLGCFNLSIDG----HAECVRFVKKFNLP 233 (371)
Q Consensus 163 vNvPL~~G~~D~~y~~~f~~vi~~~~~~---f~Pd~Ivvq~G~-D~~~-gDplg~~~Lt~~g----~~~~~~~l~~~~~p 233 (371)
+|.-+. |.+-...+..+.. .++.. .+||+|||+.|. |... .+ ....+.+. +.++++.+++. .+
T Consensus 60 ~n~g~~-G~t~~~~~~~~~~---~~~~~~~~~~pd~vvi~~G~ND~~~~~~---~~~~~~~~~~~~l~~li~~l~~~-~~ 131 (218)
T 1vjg_A 60 YNLGIR-RDTSSDIAKRWLQ---EVSLRLHKEYNSLVVFSFGLNDTTLENG---KPRVSIAETIKNTREILTQAKKL-YP 131 (218)
T ss_dssp EEEECT-TCCHHHHHHHHHH---HHHTTCCTTSEEEEEEECCHHHHCEETT---EESSCHHHHHHHHHHHHHHHHHH-SC
T ss_pred EeCCCC-CcCHHHHHHHhHH---hhhhhhccCCCCEEEEEecCCcchhhcc---cccCCHHHHHHHHHHHHHHHHHh-Cc
Confidence 455553 3334444444433 23443 599999999998 4431 11 11334444 44566666666 67
Q ss_pred eEEEc
Q 017484 234 LLVTG 238 (371)
Q Consensus 234 vl~l~ 238 (371)
++++.
T Consensus 132 iil~~ 136 (218)
T 1vjg_A 132 VLMIS 136 (218)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77663
No 40
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=37.10 E-value=37 Score=31.45 Aligned_cols=34 Identities=9% Similarity=0.194 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCC
Q 017484 175 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGD 208 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gD 208 (371)
.+...+...|..++++++|++||.-.|.|.|.+.
T Consensus 131 ~~~~~l~~~l~~~ir~~~PdvV~t~~~~d~HpDH 164 (273)
T 3dff_A 131 DLVGEVADDIRSIIDEFDPTLVVTCAAIGEHPDH 164 (273)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCCCCCChHH
Confidence 3455666677789999999999998888877654
No 41
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=35.21 E-value=44 Score=30.86 Aligned_cols=34 Identities=6% Similarity=0.138 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCC
Q 017484 175 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGD 208 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gD 208 (371)
.+...+...|..++++++|++|+.-.|.|.|.+.
T Consensus 128 ~~~~~~~~~l~~~ir~~~PdvV~t~~~~d~HpDH 161 (270)
T 3dfi_A 128 DLVAAIREDIESMIAECDPTLVLTCVAIGKHPDH 161 (270)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEEECCTTCCHHH
T ss_pred chHHHHHHHHHHHHHHcCCCEEEeCCCCCCChhH
Confidence 3455566677789999999999998888877755
No 42
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=34.41 E-value=22 Score=30.77 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=31.7
Q ss_pred cCCCEEEEecCC-CCCCCCcCcceec-C----HHHHHHHHHHHHhc--CCCeEEE
Q 017484 191 YAPGAIVLQCGA-DSLAGDRLGCFNL-S----IDGHAECVRFVKKF--NLPLLVT 237 (371)
Q Consensus 191 f~Pd~Ivvq~G~-D~~~gDplg~~~L-t----~~g~~~~~~~l~~~--~~pvl~l 237 (371)
.+||+|+|..|. |...+-+++.+.- + ...+.++++.+++. +.+++++
T Consensus 81 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~f~~~l~~li~~l~~~~P~~~iil~ 135 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFI 135 (232)
T ss_dssp TTCSEEEEECCHHHHHTTCCCCCTTCCSTTSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCEEEEEEeccccccCcCCccccccchHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 499999999998 6665555554421 1 12566778888776 6777765
No 43
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=31.48 E-value=1.5e+02 Score=27.00 Aligned_cols=69 Identities=7% Similarity=-0.007 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEE-------ecCCCCCCCCcCc-----c---eecCHHHHHHHHHHHHhcCCCeE
Q 017484 171 IDDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGDRLG-----C---FNLSIDGHAECVRFVKKFNLPLL 235 (371)
Q Consensus 171 ~~D~~y~~~f~~vi~~~~~~f~Pd~Ivv-------q~G~D~~~gDplg-----~---~~Lt~~g~~~~~~~l~~~~~pvl 235 (371)
.=+.+.+..+...+..+-..-..-+||+ ++|.|.-.-.... . +.-..+.+..++..+..+.+|++
T Consensus 29 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI 108 (263)
T 3l3s_A 29 PLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTI 108 (263)
T ss_dssp CCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCEE
T ss_pred CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 3455667777777766544333446665 4566654322110 0 00011223345666777899998
Q ss_pred EEcc
Q 017484 236 VTGG 239 (371)
Q Consensus 236 ~l~g 239 (371)
....
T Consensus 109 Aav~ 112 (263)
T 3l3s_A 109 ALVE 112 (263)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8654
No 44
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=31.34 E-value=31 Score=32.23 Aligned_cols=64 Identities=11% Similarity=0.222 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
+..+...|++.+ |-+.+|+-..||+-.|--++.... ..+.+.+-+..+++.+.+++++-|||-.
T Consensus 17 ~~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vViVhGgG~~ 80 (298)
T 2rd5_A 17 PDYRVEILSESL-PFIQKFRGKTIVVKYGGAAMTSPE------LKSSVVSDLVLLACVGLRPILVHGGGPD 80 (298)
T ss_dssp -CHHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHCHH------HHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred hHHHHHHHHHHH-HHHHHhcCCEEEEEECchhhCChh------HHHHHHHHHHHHHHCCCCEEEEECCcHH
Confidence 457888999886 778999999999999977765320 1123344444555667777777777643
No 45
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=30.68 E-value=33 Score=29.76 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=35.7
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHH----HHHHHHHHHHhc--CCCeEE
Q 017484 163 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKF--NLPLLV 236 (371)
Q Consensus 163 vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~----g~~~~~~~l~~~--~~pvl~ 236 (371)
+|.-+. |.+-..++..++. .++..++|++|||..|..=. | .+.+ .+.++++.+++. +.++++
T Consensus 69 ~n~g~~-G~t~~~~~~~~~~---~~l~~~~pd~vvi~~G~ND~-----~---~~~~~~~~~l~~~i~~l~~~~p~~~iil 136 (229)
T 1fxw_F 69 LNFGIG-GDTTRHVLWRLKN---GELENIKPKVIVVWVGTNNH-----E---NTAEEVAGGIEAIVQLINTRQPQAKIIV 136 (229)
T ss_dssp EEEECT-TCCHHHHHHHHHT---TTTSSCCCSEEEEECCTTCT-----T---SCHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred eeeccC-cchHHHHHHHHHc---CccccCCCCEEEEEEecCCC-----C---CCHHHHHHHHHHHHHHHHHHCCCCeEEE
Confidence 555553 3334444443332 12346799999999998433 1 3443 455566677665 455665
Q ss_pred E
Q 017484 237 T 237 (371)
Q Consensus 237 l 237 (371)
+
T Consensus 137 ~ 137 (229)
T 1fxw_F 137 L 137 (229)
T ss_dssp E
T ss_pred E
Confidence 4
No 46
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=30.62 E-value=41 Score=29.13 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.6
Q ss_pred HHhCCcEEEEeccccCcc
Q 017484 102 LKYHARVLYIDIDVHHGD 119 (371)
Q Consensus 102 l~~~~RVliiD~DvHHGd 119 (371)
.+...||++||+|..+|+
T Consensus 28 a~~g~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 28 GDRGRKVLAVDGDLTMAN 45 (237)
T ss_dssp HHTTCCEEEEECCTTSCC
T ss_pred HhcCCeEEEEeCCCCCCC
Confidence 345689999999998775
No 47
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=30.41 E-value=1.2e+02 Score=27.30 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=39.4
Q ss_pred CCCCchhhHHHHHHHHhhhhCCCCCCCCCCchhhhhhCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHhh
Q 017484 240 GGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLR 310 (371)
Q Consensus 240 GGY~~~~~ar~~~~~t~~llg~~~~~~iP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~i~~~l~ 310 (371)
-+|.+..+|-+..++++.++|.++|..-....|++.|..++ +.+.|+.+.+.+.+.+.
T Consensus 182 l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~-------------~~~~l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 182 LQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTV-------------TLELLDELTHEFLQILE 239 (257)
T ss_dssp GTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSC-------------CHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCC-------------CHHHHHHHHHHHHHHHH
Confidence 47999999999889999999987764221234666654333 46667777776666553
No 48
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=29.74 E-value=55 Score=30.09 Aligned_cols=63 Identities=10% Similarity=0.253 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCc
Q 017484 175 SFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTK 244 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~ 244 (371)
++...|++.+ |-+.+|+-..||+-.|-.++.... ..+.+.+-+..+++.+.+++++-|||-..
T Consensus 4 ~~~~~~~~~~-pyi~~~~~~~iViKlGGs~l~~~~------~~~~~~~~i~~l~~~G~~vVlVhGgG~~i 66 (282)
T 2bty_A 4 DTVNVLLEAL-PYIKEFYGKTFVIKFGGSAMKQEN------AKKAFIQDIILLKYTGIKPIIVHGGGPAI 66 (282)
T ss_dssp HHHHHHHHHH-HHHHHHTTCEEEEEECSHHHHSHH------HHHHHHHHHHHHHHTTCEEEEEECCSHHH
T ss_pred HHHHHHHHHH-HHHHHhcCCeEEEEECchhhCChh------HHHHHHHHHHHHHHCCCcEEEEECCcHHH
Confidence 5677888875 778999989999999977765320 12233334444555577777777777543
No 49
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=29.04 E-value=45 Score=29.26 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=14.7
Q ss_pred HHhCCcEEEEeccccCcc
Q 017484 102 LKYHARVLYIDIDVHHGD 119 (371)
Q Consensus 102 l~~~~RVliiD~DvHHGd 119 (371)
.+...||++||+|..+|+
T Consensus 28 a~~g~~VlliD~D~~~~~ 45 (260)
T 3q9l_A 28 AQKGKKTVVIDFAIGLRN 45 (260)
T ss_dssp HHTTCCEEEEECCCSSCC
T ss_pred HhCCCcEEEEECCCCCCC
Confidence 345789999999997776
No 50
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=28.67 E-value=1.3e+02 Score=27.55 Aligned_cols=74 Identities=19% Similarity=0.173 Sum_probs=39.2
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEe-------cCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeE
Q 017484 163 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQ-------CGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLL 235 (371)
Q Consensus 163 vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq-------~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl 235 (371)
+|-|=+...=+.+.+..+...+..+-.. ...+||+. +|.|.-.... ..-..+.+.++++.+..+.+|+|
T Consensus 36 lnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~~---~~~~~~~~~~~~~~l~~~~kPvI 111 (264)
T 3he2_A 36 LQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDAF---AADYPDRLIELHKAMDASPMPVV 111 (264)
T ss_dssp ECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCTT---GGGHHHHHHHHHHHHHHCSSCEE
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccchh---hHHHHHHHHHHHHHHHhCCCCEE
Confidence 3444333344556666666677665555 66677774 4555431110 00112334456677778899998
Q ss_pred EEccC
Q 017484 236 VTGGG 240 (371)
Q Consensus 236 ~l~gG 240 (371)
....|
T Consensus 112 Aav~G 116 (264)
T 3he2_A 112 GAING 116 (264)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 87653
No 51
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.80 E-value=1.2e+02 Score=26.32 Aligned_cols=132 Identities=11% Similarity=0.221 Sum_probs=46.0
Q ss_pred ccCCCCCcccCCCccchHHhHHHHHHHHHHHhCCcEEEEeccccCccccccccccCCcEEEEeccccCCCCCCCCCCCCc
Q 017484 73 WAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKE 152 (371)
Q Consensus 73 ~~GG~HHA~~~~a~GFC~~Ndiaiai~~ll~~~~RVliiD~DvHHGdGtq~~F~~d~~VltiSiH~~~~~ffPgtG~~~~ 152 (371)
..+++.........|-+++-.+.++...+++... ++. -+-... .. ...++|+.... .|...+
T Consensus 41 l~p~m~~vG~~w~~g~~~~~~~~~~~~~~~~~l~-~l~----~~~~~~--~~-~~~~~vll~~~----------~gd~H~ 102 (210)
T 1y80_A 41 LIAGMDRVGVLFKNNEMFVPEVLMSANAMNAGVE-VVK----QSQQAF--DM-PSVGKIVLGTV----------KGDLHD 102 (210)
T ss_dssp ---------------------------------------------------C-CCCCEEEEEEB----------TTCCCC
T ss_pred HHHHHHHHHHHHcCCceeHHHHHHHHHHHHHHHH-HHH----HHhccc--cC-CCCCEEEEEeC----------CCcccH
Confidence 3566777777777888888888777655543321 111 011100 00 23457777654 355666
Q ss_pred ccCC------CCcce-EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHH
Q 017484 153 IGER------EGKFY-AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVR 225 (371)
Q Consensus 153 ~G~~------~G~~~-~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~ 225 (371)
+|.. ...|| .+++.. ....+ .++ ..+.+.+|++|.+|+-... +.....++++
T Consensus 103 iG~~~va~~l~~~G~~v~~LG~--~vp~~-------~l~-~~~~~~~~d~v~lS~~~~~-----------~~~~~~~~i~ 161 (210)
T 1y80_A 103 IGKNLVAMMLESGGFTVYNLGV--DIEPG-------KFV-EAVKKYQPDIVGMSALLTT-----------TMMNMKSTID 161 (210)
T ss_dssp HHHHHHHHHHHHTTCEEEECCS--SBCHH-------HHH-HHHHHHCCSEEEEECCSGG-----------GTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEECCC--CCCHH-------HHH-HHHHHcCCCEEEEeccccc-----------cHHHHHHHHH
Confidence 6643 12223 233322 22222 222 4456779999999985321 3345667788
Q ss_pred HHHhcCCC--e-EEEccCCCC
Q 017484 226 FVKKFNLP--L-LVTGGGGYT 243 (371)
Q Consensus 226 ~l~~~~~p--v-l~l~gGGY~ 243 (371)
.+++.+.+ + +++||.+.+
T Consensus 162 ~l~~~~~~~~~~v~vGG~~~~ 182 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGAPLS 182 (210)
T ss_dssp HHHHTTCGGGCEEEEESTTCC
T ss_pred HHHhcCCCCCCeEEEECCCCC
Confidence 88876532 3 444444443
No 52
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=27.60 E-value=4e+02 Score=25.25 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 017484 172 DDTSFTRLFKTIISKVVETYAPGAIVLQCG 201 (371)
Q Consensus 172 ~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G 201 (371)
+...|...++.++ ..+.+..|+.+|+..|
T Consensus 153 ~~~~w~~~~~~~i-~~IR~~dp~~~Iiv~g 181 (345)
T 3jug_A 153 DGAAWADGYIDVI-PKLRDAGLTHTLMVDA 181 (345)
T ss_dssp CHHHHHHHHHHHH-HHHHHTTCCSCEEEEC
T ss_pred CHHHHHHHHHHHH-HHHHhhCCCCEEEEeC
Confidence 3567777777665 5577889997666555
No 53
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.47 E-value=74 Score=31.54 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHh-c----CCCeEEEccCCCCc
Q 017484 179 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKK-F----NLPLLVTGGGGYTK 244 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~-~----~~pvl~l~gGGY~~ 244 (371)
-+++.|..+.+.|+|++|+|.+.. -...||.+. .+.+.++. . ++||+.+--.||.-
T Consensus 83 ~L~~aI~~~~~~~~P~~I~V~tTC~~e~IGdDi~----------~v~~~~~~~~~~~~~~pvi~v~tpgf~g 144 (458)
T 1mio_B 83 NIKTAVKNIFSLYNPDIIAVHTTCLSETLGDDLP----------TYISQMEDAGSIPEGKLVIHTNTPSYVG 144 (458)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEECHHHHHHTCCHH----------HHHHHHHHTTCSCTTCEEEEECCCTTSS
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHHhcCHH----------HHHHHHHHhcCCCCCCeEEEEECCCCcc
Confidence 345566777888999998776543 444455322 13333332 2 57777777777774
No 54
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=26.49 E-value=53 Score=29.03 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.3
Q ss_pred HhCCcEEEEeccccCcc
Q 017484 103 KYHARVLYIDIDVHHGD 119 (371)
Q Consensus 103 ~~~~RVliiD~DvHHGd 119 (371)
+...||++||+|...|+
T Consensus 29 ~~g~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 29 QLGHDVTIVDADITMAN 45 (263)
T ss_dssp HTTCCEEEEECCCSSSS
T ss_pred hCCCcEEEEECCCCCCC
Confidence 45689999999998776
No 55
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=26.37 E-value=68 Score=27.27 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCEEEEecC
Q 017484 183 IISKVVETYAPGAIVLQCG 201 (371)
Q Consensus 183 vi~~~~~~f~Pd~Ivvq~G 201 (371)
.|..++++.+||+|.+|=-
T Consensus 35 ~i~~~i~~~~pDIi~LQEv 53 (256)
T 4fva_A 35 AVAHIVKNVNPDILFLQEV 53 (256)
T ss_dssp HHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEec
Confidence 3456778899999999963
No 56
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=26.21 E-value=1.2e+02 Score=29.01 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHH---HHHHHHhcCCCeEEEccCCCC
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAE---CVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~---~~~~l~~~~~pvl~l~gGGY~ 243 (371)
.++...+|+.++ .++.+.+||+||+ +| |..- -.-+.+.+.+.. .++.+... +|++++ -|--.
T Consensus 25 ~~~~~~~l~~l~-~~~~~~~~D~vli-aG-Dl~h----d~~~~~~~~~~~~~~~l~~l~~~-~~v~~i-~GNHD 89 (379)
T 3tho_B 25 REELKKALDKVV-EEAEKREVDLILL-TG-DLLH----SRNNPSVVALHDLLDYLKRMMRT-APVVVL-PGNQD 89 (379)
T ss_dssp HHHHHHHHHHHH-HHHHHHTCSEEEE-CS-CCBS----CSSSCCHHHHHHHHHHHHHHHHH-SCEEEC-CCTTS
T ss_pred hHHHHHHHHHHH-HHHHhcCCCEEEE-CC-Cccc----cCCCCCHHHHHHHHHHHHHHHhC-CCEEEE-cCCCc
Confidence 345677777765 4567789999887 33 3220 122234444433 34444444 787776 44444
No 57
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=25.67 E-value=1.5e+02 Score=29.47 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHH
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVK 228 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~ 228 (371)
.+....|+.++.. +.+.+||+||+ +| |..- ...-+.+....+.+.++
T Consensus 54 ~d~~~~l~~ll~~-~~~~~~D~Vli-aG-Dlfd-----~~~~~~~~~~~~~~~L~ 100 (431)
T 3t1i_A 54 NDTFVTLDEILRL-AQENEVDFILL-GG-DLFH-----ENKPSRKTLHTCLELLR 100 (431)
T ss_dssp THHHHHHHHHHHH-HHHTTCSEEEE-CS-CCBS-----SSSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH-HhhcCCCEEEE-cC-cccc-----CCCCCHHHHHHHHHHHH
Confidence 3456677776644 56789999988 33 4332 22334455555555554
No 58
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=25.50 E-value=1.9e+02 Score=26.06 Aligned_cols=64 Identities=9% Similarity=0.075 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEec-------CCCCCCCCcCcceecCHHH-----HHHHHHHHHhcCCCeEEEccC
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQC-------GADSLAGDRLGCFNLSIDG-----HAECVRFVKKFNLPLLVTGGG 240 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~-------G~D~~~gDplg~~~Lt~~g-----~~~~~~~l~~~~~pvl~l~gG 240 (371)
+.+.+..+...+..+-..-...+||+.. |.|.-.- .... .... +.+++..+..+.+|++....|
T Consensus 28 ~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~---~~~~-~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 103 (257)
T 2ej5_A 28 TEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGV---TEEM-DHGDVLRSRYAPMMKALHHLEKPVVAAVNG 103 (257)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-----------CHHHHHHHTHHHHHHHHHHCCSCEEEEECS
T ss_pred CHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHH---hhcc-chhHHHHHHHHHHHHHHHhCCCCEEEEECc
Confidence 4566666666776655444456777743 4443221 0000 1111 334556677789999876543
No 59
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=25.29 E-value=2.3e+02 Score=24.63 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecC-HHHHHHHHHHHHhcCCCeE
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLS-IDGHAECVRFVKKFNLPLL 235 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt-~~g~~~~~~~l~~~~~pvl 235 (371)
++.....++..+ .++.+.....|++..|.+.. -.+... .+.+.++.+.+++.++++.
T Consensus 80 ~~~~~~~~~~~i-~~a~~lG~~~v~~~~g~~~~-----~~~~~~~~~~l~~l~~~a~~~gv~l~ 137 (272)
T 2q02_A 80 TEEVVKKTEGLL-RDAQGVGARALVLCPLNDGT-----IVPPEVTVEAIKRLSDLFARYDIQGL 137 (272)
T ss_dssp CHHHHHHHHHHH-HHHHHHTCSEEEECCCCSSB-----CCCHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHH-HHHHHhCCCEEEEccCCCch-----hHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 345566676666 56788999999988886532 234344 6777777777777776543
No 60
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=25.19 E-value=1e+02 Score=30.70 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc-----CCCeEEEccCCCCch
Q 017484 179 LFKTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF-----NLPLLVTGGGGYTKE 245 (371)
Q Consensus 179 ~f~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~-----~~pvl~l~gGGY~~~ 245 (371)
-+.+.|..+.+.|+|++|+|.+.. -...||.+.. +.+.++.. ++||+.+--.||.-.
T Consensus 79 ~L~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~----------v~~~~~~~~~~~~~~pVi~v~tpgf~gs 141 (458)
T 3pdi_B 79 NVVEALKTICERQNPSVIGLLTTGLSETQGCDLHT----------ALHEFRTQYEEYKDVPIVPVNTPDFSGC 141 (458)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEECHHHHTTCTTHHH----------HHHHTTTSCCSCSCSCEEEECCCTTSSC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHHhcCCHHH----------HHHHHHHhccccCCCeEEEeeCCCcCCc
Confidence 344556677888999998877654 5556664322 33444432 689999999999853
No 61
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=25.12 E-value=30 Score=29.22 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHhcCCCEEEEecCC-CCCCCCcCcceecCH----HHHHHHHHHHHhcC--CCeEEE
Q 017484 188 VETYAPGAIVLQCGA-DSLAGDRLGCFNLSI----DGHAECVRFVKKFN--LPLLVT 237 (371)
Q Consensus 188 ~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~----~g~~~~~~~l~~~~--~pvl~l 237 (371)
+...+||+|||+.|. |... +.+. +.+.++++.+++.+ .+++++
T Consensus 81 ~~~~~pd~vvi~~G~ND~~~-------~~~~~~~~~~l~~~i~~l~~~~p~~~iil~ 130 (214)
T 2hsj_A 81 LYGGAVDKIFLLIGTNDIGK-------DVPVNEALNNLEAIIQSVARDYPLTEIKLL 130 (214)
T ss_dssp CCCSCCCEEEEECCHHHHHT-------TCCHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHhcCCCEEEEEEecCcCCc-------CCCHHHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 345799999999997 4433 2333 34455666666654 555554
No 62
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=24.35 E-value=44 Score=28.99 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=15.2
Q ss_pred Hh-CCcEEEEeccccCcccc
Q 017484 103 KY-HARVLYIDIDVHHGDGV 121 (371)
Q Consensus 103 ~~-~~RVliiD~DvHHGdGt 121 (371)
+. ..||++||+|...|+=+
T Consensus 31 ~~~g~~VlliD~D~~~~~l~ 50 (245)
T 3ea0_A 31 QEPDIHVLAVDISLPFGDLD 50 (245)
T ss_dssp TSTTCCEEEEECCTTTCCGG
T ss_pred hCcCCCEEEEECCCCCCCHH
Confidence 44 78999999999877643
No 63
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=24.08 E-value=2.1e+02 Score=26.20 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=37.5
Q ss_pred EEeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEE-------ecCCCCCCCCcC--ccee-c---CHHHHHHHHHHHH
Q 017484 162 AINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGDRL--GCFN-L---SIDGHAECVRFVK 228 (371)
Q Consensus 162 ~vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivv-------q~G~D~~~gDpl--g~~~-L---t~~g~~~~~~~l~ 228 (371)
++|-|=+...=+.+.+..+...+..+-..-.. +||+ ++|.|.-.--.. .... + ....+.+++..+.
T Consensus 40 tlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (280)
T 2f6q_A 40 MFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFI 118 (280)
T ss_dssp EECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHH
Confidence 34544333444566777777777766543344 6666 344443221000 0000 0 0012234455666
Q ss_pred hcCCCeEEEccC
Q 017484 229 KFNLPLLVTGGG 240 (371)
Q Consensus 229 ~~~~pvl~l~gG 240 (371)
.+.+|++....|
T Consensus 119 ~~~kPvIAav~G 130 (280)
T 2f6q_A 119 DFPKPLIAVVNG 130 (280)
T ss_dssp SCCSCEEEEECS
T ss_pred cCCCCEEEEECC
Confidence 778999886553
No 64
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.85 E-value=84 Score=31.68 Aligned_cols=56 Identities=20% Similarity=0.155 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCchh
Q 017484 181 KTIISKVVETYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTKEN 246 (371)
Q Consensus 181 ~~vi~~~~~~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~~~ 246 (371)
.+.|..+.+.|+|++|+|.... -.+.||.+.. +.+.++ ..++||+.+--.||.-..
T Consensus 77 ~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~----------v~~~~~~~~g~pVi~v~tpgf~g~~ 134 (511)
T 2xdq_B 77 VDNIIRKDTEEHPDLIVLTPTCTSSILQEDLQN----------FVRRASLSTTADVLLADVNHYRVNE 134 (511)
T ss_dssp HHHHHHHHHHHCCSEEEEECCHHHHTTCCCHHH----------HHHHHHHHCSSEEEECCCCTTTCCH
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHHHHhccCHHH----------HHHHhhhccCCCEEEeeCCCcccch
Confidence 3345566778999998887766 7777775432 333333 458999999999998643
No 65
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=23.72 E-value=31 Score=32.67 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=29.5
Q ss_pred hcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEE
Q 017484 190 TYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVT 237 (371)
Q Consensus 190 ~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l 237 (371)
.++||+|||..|. |...+.+. ..--.+.|.++++.+++. +.+|+++
T Consensus 223 ~~~Pd~VvI~lG~ND~~~~~~~--~~~~~~~l~~li~~ir~~~p~~~I~l~ 271 (347)
T 2waa_A 223 RYQPDLIISAIGTNDFSPGIPD--RATYINTYTRFVRTLLDNHPQATIVLT 271 (347)
T ss_dssp GCCCSEEEECCCHHHHSSSCCC--HHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred cCCCCEEEEEccccCCCCCCCc--HHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 6799999999998 55543211 011235677788888775 4555554
No 66
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=23.67 E-value=1.8e+02 Score=25.23 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEcc
Q 017484 176 FTRLFKTIISKVVET-YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGG 239 (371)
Q Consensus 176 y~~~f~~vi~~~~~~-f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~g 239 (371)
....++.++..+.+. -+||+||+ +| |..... +...|..+.+.+++++.|++++.|
T Consensus 24 ~~~~l~~~l~~~~~~~~~~d~vi~-~G-Dl~~~~-------~~~~~~~~~~~l~~l~~p~~~v~G 79 (274)
T 3d03_A 24 VNAANADVVSQLNALRERPDAVVV-SG-DIVNCG-------RPEEYQVARQILGSLNYPLYLIPG 79 (274)
T ss_dssp HHHHHHHHHHHHHTCSSCCSEEEE-ES-CCBSSC-------CHHHHHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEE-CC-CCCCCC-------CHHHHHHHHHHHHhcCCCEEEECC
Confidence 445667677665443 26788654 44 433211 234566777788888889877754
No 67
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=23.61 E-value=85 Score=25.99 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCCEEEEec
Q 017484 183 IISKVVETYAPGAIVLQC 200 (371)
Q Consensus 183 vi~~~~~~f~Pd~Ivvq~ 200 (371)
.|..++++.+||+|.+|=
T Consensus 25 ~i~~~i~~~~pDIi~LQE 42 (250)
T 4f1h_A 25 GLCSYLALYTPDVVFLQE 42 (250)
T ss_dssp HHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEe
Confidence 344667888999999995
No 68
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=23.48 E-value=2.6e+02 Score=25.71 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=36.6
Q ss_pred EeecCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEe-------cCCCCCCCCcCcc---------eecCHHHHHHHHHH
Q 017484 163 INVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQ-------CGADSLAGDRLGC---------FNLSIDGHAECVRF 226 (371)
Q Consensus 163 vNvPL~~G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq-------~G~D~~~gDplg~---------~~Lt~~g~~~~~~~ 226 (371)
+|-|=....=+.+.+..+...+..+-..-...+||+. +|.|.-.-..... ..-....+..++..
T Consensus 39 lnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (290)
T 3sll_A 39 LNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILT 118 (290)
T ss_dssp ECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHH
Confidence 3444323344566677777777665443334466663 3444322111000 00012233456666
Q ss_pred HHhcCCCeEEEcc
Q 017484 227 VKKFNLPLLVTGG 239 (371)
Q Consensus 227 l~~~~~pvl~l~g 239 (371)
+..+.+|+|....
T Consensus 119 l~~~~kPvIAav~ 131 (290)
T 3sll_A 119 LRRMHQPVIAAIN 131 (290)
T ss_dssp HHHCSSCEEEEEC
T ss_pred HHhCCCCEEEEEC
Confidence 7778999987654
No 69
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=23.17 E-value=1.9e+02 Score=25.32 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=32.2
Q ss_pred HhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCCchhhHHHHHHHHhhhhCC
Q 017484 189 ETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 261 (371)
Q Consensus 189 ~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~~~~~ar~~~~~t~~llg~ 261 (371)
-+.+||+||.+.+. .....+.+++.++|++++-. .+...+.+ +...++.++|+
T Consensus 57 ~~l~PDLIi~~~~~-----------------~~~~~~~L~~~gipvv~~~~--~~~~~~~~-~i~~lg~~~g~ 109 (260)
T 2q8p_A 57 KKLKPTHVLSVSTI-----------------KDEMQPFYKQLNMKGYFYDF--DSLKGMQK-SITQLGDQFNR 109 (260)
T ss_dssp HHTCCSEEEEEGGG-----------------HHHHHHHHHHHTSCCEEECC--SSHHHHHH-HHHHHHHHTTC
T ss_pred HhcCCCEEEecCcc-----------------CHHHHHHHHHcCCcEEEecC--CCHHHHHH-HHHHHHHHhCC
Confidence 34699999975321 12355778888999988742 23333333 34455667775
No 70
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A*
Probab=23.07 E-value=42 Score=31.50 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=30.0
Q ss_pred hcCCCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHHhc--CCCeEEEc
Q 017484 190 TYAPGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVKKF--NLPLLVTG 238 (371)
Q Consensus 190 ~f~Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~~~--~~pvl~l~ 238 (371)
.++||+|||..|. |...+.+. ..--.+.|.++++.+++. +.+|+++.
T Consensus 211 ~~~PdlVvI~lGtND~~~~~~~--~~~~~~~l~~li~~ir~~~p~a~Iil~~ 260 (341)
T 2wao_A 211 KYVPQVVVINLGTNDFSTSFAD--KTKFVTAYKNLISEVRRNYPDAHIFCCV 260 (341)
T ss_dssp GCCCSEEEEECCHHHHSSSCCC--HHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCEEEEeCccccCCCCCCC--HHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 6899999999998 66544321 011235566777777765 45666654
No 71
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=22.67 E-value=57 Score=28.10 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCC
Q 017484 178 RLFKTIISKVVETYAPGAIVLQCGAD 203 (371)
Q Consensus 178 ~~f~~vi~~~~~~f~Pd~Ivvq~G~D 203 (371)
..++.++..+ .+-+.|+||+=|+..
T Consensus 118 ~~l~~~l~~l-~~~~yD~viiD~pp~ 142 (254)
T 3kjh_A 118 SFLGSVVSAL-FLDKKEAVVMDMGAG 142 (254)
T ss_dssp HHHHHHHHHH-HHTCCSEEEEEECTT
T ss_pred HHHHHHHHHh-ccCCCCEEEEeCCCc
Confidence 4466666665 234679999988753
No 72
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.58 E-value=1.1e+02 Score=25.93 Aligned_cols=35 Identities=3% Similarity=-0.095 Sum_probs=24.0
Q ss_pred HHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcC
Q 017484 186 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFN 231 (371)
Q Consensus 186 ~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~ 231 (371)
..+.+++|++|.+|+=.. -+.....++++.|++.+
T Consensus 63 ~aa~~~~~diV~lS~~~~-----------~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 63 MAAVQEDVDVIGVSILNG-----------AHLHLMKRLMAKLRELG 97 (161)
T ss_dssp HHHHHTTCSEEEEEESSS-----------CHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCEEEEEeech-----------hhHHHHHHHHHHHHhcC
Confidence 446678999999987533 23344566778887764
No 73
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=22.11 E-value=2.1e+02 Score=27.23 Aligned_cols=65 Identities=11% Similarity=0.211 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhcC--CCEEEEecCCCCCCCCcCcceecC--HHHHHHHHHHHHhcCC-CeEEEccCCCCc
Q 017484 175 SFTRLFKTIISKVVETYA--PGAIVLQCGADSLAGDRLGCFNLS--IDGHAECVRFVKKFNL-PLLVTGGGGYTK 244 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~--Pd~Ivvq~G~D~~~gDplg~~~Lt--~~g~~~~~~~l~~~~~-pvl~l~gGGY~~ 244 (371)
.+...+...+..++++|+ |+.|++..+ ..|.+.+.-+ .+.+.++++.|++.+. .+|++++-+|+-
T Consensus 117 ~~~~~~~~~w~~iA~ryk~~~~~Vi~el~-----NEP~~~~~~~~w~~~~~~~i~~IR~~dp~~~Iiv~g~~w~~ 186 (345)
T 3jug_A 117 SDLDRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGSWDGAAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 186 (345)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEeCCCccc
Confidence 456666667777788885 456655544 4565532211 2345567788888754 356666667764
No 74
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=22.05 E-value=53 Score=31.15 Aligned_cols=63 Identities=14% Similarity=0.314 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCCCC
Q 017484 174 TSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYT 243 (371)
Q Consensus 174 ~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGGY~ 243 (371)
.++...|++.+ |-+.+|+-..||+-.|--++.... ..+.+.+-+..+++.+.+++++-|||-.
T Consensus 31 ~~~~~~~~~a~-pyi~~~~~k~iVIKlGGs~l~~~~------~~~~l~~~i~~l~~~G~~vVlVhGgG~~ 93 (321)
T 2v5h_A 31 ADRVRILSEAL-PYLQQFAGRTVVVKYGGAAMKQEE------LKEAVMRDIVFLACVGMRPVVVHGGGPE 93 (321)
T ss_dssp CCHHHHHHHTH-HHHHHTTTCEEEEEECTHHHHSHH------HHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred hhHHHHHHHHH-HHHHHhCCCeEEEEECchhhCCch------HHHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 36888899876 778999999999999977765420 1123334444555667778877777643
No 75
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=21.72 E-value=2.2e+02 Score=25.48 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEEec-------CCCCCCCCcC-cceecCHHHHHHHHHHHHhcCCCeEEEccC
Q 017484 171 IDDTSFTRLFKTIISKVVETYAPGAIVLQC-------GADSLAGDRL-GCFNLSIDGHAECVRFVKKFNLPLLVTGGG 240 (371)
Q Consensus 171 ~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~-------G~D~~~gDpl-g~~~Lt~~g~~~~~~~l~~~~~pvl~l~gG 240 (371)
.=+.+.+..+...+..+-..-.--+||+.. |.|.-.-... ....-..+.+..++..+..+.+|++....|
T Consensus 23 Al~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 100 (254)
T 3hrx_A 23 AITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNG 100 (254)
T ss_dssp CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECS
T ss_pred CCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 335566666777777765533444666643 3332211000 000011123445666777789999887644
No 76
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*
Probab=21.72 E-value=2.4e+02 Score=25.02 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCEEEE-------ecCCCCCCCCcC--cceecCHHHHHHHHHHHHhcCCCeEEEcc
Q 017484 171 IDDTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGDRL--GCFNLSIDGHAECVRFVKKFNLPLLVTGG 239 (371)
Q Consensus 171 ~~D~~y~~~f~~vi~~~~~~f~Pd~Ivv-------q~G~D~~~gDpl--g~~~Lt~~g~~~~~~~l~~~~~pvl~l~g 239 (371)
.=+.+.+..+...+..+-+. ...+||+ ++|.|.-.-... ....-....+.++++.+..+.+|++....
T Consensus 27 al~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~ 103 (233)
T 3r6h_A 27 VLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACT 103 (233)
T ss_dssp CCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 33556666666777665544 4456665 233332111000 00000011223455667777999988754
No 77
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=21.70 E-value=95 Score=26.24 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=13.8
Q ss_pred HHHHHHhcCCCEEEEec
Q 017484 184 ISKVVETYAPGAIVLQC 200 (371)
Q Consensus 184 i~~~~~~f~Pd~Ivvq~ 200 (371)
|..++++.+||+|.+|=
T Consensus 32 i~~~i~~~~pDIi~LQE 48 (256)
T 4gz1_A 32 VCSCLALYSPDVVFLQE 48 (256)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEc
Confidence 44667889999999994
No 78
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=21.23 E-value=3.6e+02 Score=24.19 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhcC--CCEEEEecCCCCCCCCcCcceecC--HHHHHHHHHHHHhcCC-CeEEEccCCCCc
Q 017484 175 SFTRLFKTIISKVVETYA--PGAIVLQCGADSLAGDRLGCFNLS--IDGHAECVRFVKKFNL-PLLVTGGGGYTK 244 (371)
Q Consensus 175 ~y~~~f~~vi~~~~~~f~--Pd~Ivvq~G~D~~~gDplg~~~Lt--~~g~~~~~~~l~~~~~-pvl~l~gGGY~~ 244 (371)
.....+...+..++++|+ |+.|++..+ ..|.+.+.-+ .+.|.++++.+++.+. .+|++++.+++.
T Consensus 94 ~~~~~~~~~w~~ia~~y~~~~~~v~~el~-----NEP~~~~~~~~~~~~~~~~~~~IR~~d~~~~i~v~~~~~~~ 163 (294)
T 2whl_A 94 SDLNRAVDYWIEMKDALIGKEDTVIINIA-----NEWYGSWDGSAWADGYIDVIPKLRDAGLTHTLMVDAAGWGQ 163 (294)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTTEEEECC-----TTCCCSSCHHHHHHHHHHHHHHHHHTTCCSCEEEECBTTTT
T ss_pred hhHHHHHHHHHHHHHHHcCCCCeEEEEec-----CCCCCCCChHHHHHHHHHHHHHHHhcCCCcEEEEcCCCCCC
Confidence 455666666677788886 444445333 4465532211 3456678888888743 455555555553
No 79
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=20.89 E-value=2.1e+02 Score=27.42 Aligned_cols=51 Identities=20% Similarity=0.372 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHHHHHHHHHHHHhcCCCeEEEccCC
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGG 241 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~g~~~~~~~l~~~~~pvl~l~gGG 241 (371)
.+..-.++. -+.+++++++||+|++.- |+...+. ....+..++|++. .++|
T Consensus 76 ~~~~~~~~~-~l~~~l~~~kPD~Vlv~g-------d~~~~~a---------alaA~~~~IPv~h-~eag 126 (385)
T 4hwg_A 76 AKSIGLVIE-KVDEVLEKEKPDAVLFYG-------DTNSCLS---------AIAAKRRKIPIFH-MEAG 126 (385)
T ss_dssp HHHHHHHHH-HHHHHHHHHCCSEEEEES-------CSGGGGG---------HHHHHHTTCCEEE-ESCC
T ss_pred HHHHHHHHH-HHHHHHHhcCCcEEEEEC-------CchHHHH---------HHHHHHhCCCEEE-EeCC
Confidence 333334444 456888999999998873 3322221 1233456999754 4666
No 80
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=20.39 E-value=3e+02 Score=24.80 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCEEEE-------ecCCCCCCCC----cCccee---cCHHHHHHHHHHHHhcCCCeEEEc
Q 017484 173 DTSFTRLFKTIISKVVETYAPGAIVL-------QCGADSLAGD----RLGCFN---LSIDGHAECVRFVKKFNLPLLVTG 238 (371)
Q Consensus 173 D~~y~~~f~~vi~~~~~~f~Pd~Ivv-------q~G~D~~~gD----plg~~~---Lt~~g~~~~~~~l~~~~~pvl~l~ 238 (371)
+.+.+..+...+..+-..-...+||+ ++|.|.-.-. +..... -....+.+++..+..+.+|++...
T Consensus 36 ~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 115 (267)
T 3oc7_A 36 STALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAI 115 (267)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 45666667777766654333446665 3455543211 100000 012233445666777899998765
Q ss_pred c
Q 017484 239 G 239 (371)
Q Consensus 239 g 239 (371)
.
T Consensus 116 ~ 116 (267)
T 3oc7_A 116 D 116 (267)
T ss_dssp C
T ss_pred c
Confidence 3
No 81
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=20.29 E-value=1.7e+02 Score=28.82 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCCcCcceecCHH----HHHHHHHHHHhcCCCeEE
Q 017484 170 GIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSID----GHAECVRFVKKFNLPLLV 236 (371)
Q Consensus 170 G~~D~~y~~~f~~vi~~~~~~f~Pd~Ivvq~G~D~~~gDplg~~~Lt~~----g~~~~~~~l~~~~~pvl~ 236 (371)
.++.+.++...+.++..=+.+...+.|+|=.|......|.+|.|....+ |...+++.+++.+.++-+
T Consensus 25 ~~~e~~i~~~ad~~~~~gl~~~G~~~~~iDdgW~~~~~d~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~Gi 95 (417)
T 1szn_A 25 DIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKLGI 95 (417)
T ss_dssp CCCHHHHHHHHHHHHHTTHHHHTCCEEECCSSCBCTTCCBTTBCCBCTTTCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHHHHcCchhhCCCEEEECCCccCCCCCCCCCEEECcccCCcCHHHHHHHHHHcCCEEEE
Confidence 4567777777776655445677899999999999888888898876654 899999999998887533
No 82
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=20.06 E-value=1.6e+02 Score=29.70 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcC-CCEEEEecCC-CCCCCCcCcceecCHHHHHHHHHHHH-hcCCCeEEEccCCCCc
Q 017484 179 LFKTIISKVVETYA-PGAIVLQCGA-DSLAGDRLGCFNLSIDGHAECVRFVK-KFNLPLLVTGGGGYTK 244 (371)
Q Consensus 179 ~f~~vi~~~~~~f~-Pd~Ivvq~G~-D~~~gDplg~~~Lt~~g~~~~~~~l~-~~~~pvl~l~gGGY~~ 244 (371)
-+.+.|..+.+.|+ |++|+|.... -.+.||.+.. +.+.++ +.++||+.+--.||.-
T Consensus 130 kL~~~I~~~~~~~~~P~~I~V~tTC~~e~IGdDl~~----------v~~~~~~~~~~pVi~v~tpgf~g 188 (492)
T 3u7q_A 130 KLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIES----------VSKVKGAELSKTIVPVRCEGFRG 188 (492)
T ss_dssp HHHHHHHHHHHHCTTCCCEEEEECTHHHHTTCCHHH----------HHHHHHHHHTCCEEEECCCTTSS
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCcHHHHHhcCHHH----------HHHHHHHhhCCcEEEecCCCCCC
Confidence 45556677888899 9988776554 5666665432 333333 3589999999999986
Done!