RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 017484
         (371 letters)



>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 364

 Score =  234 bits (598), Expect = 5e-75
 Identities = 127/286 (44%), Positives = 189/286 (66%)

Query: 27  KPHRLYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEAS 86
                Y LG DCP  E +F++     G TI AA+ L + +C +AINW+GG HHAKK EAS
Sbjct: 78  PDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEAS 137

Query: 87  GFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPG 146
           GFCY+ND VLGIL L +   R+LY+D+D+HHGDGVE+AF FT +VMTVS HKF   FFPG
Sbjct: 138 GFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPG 197

Query: 147 TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLA 206
           TGDV ++G  +G++Y++NVP++DGI D  + ++ ++++ +V + + P A+VLQ GAD++A
Sbjct: 198 TGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIA 257

Query: 207 GDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNE 266
           GD +  FN++  G  +C++++ ++ L  L+ GGGGY   N ARCWT  TG++L   L +E
Sbjct: 258 GDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSE 317

Query: 267 IPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI 312
           IP++E+   + P+  L I      + N    +  I   +  NL+ +
Sbjct: 318 IPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 363


>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
           63363]}
          Length = 372

 Score =  180 bits (456), Expect = 8e-54
 Identities = 102/371 (27%), Positives = 152/371 (40%), Gaps = 66/371 (17%)

Query: 6   KISYFYDGDVGSVYFGPNHPMKPHRL---------YNLGEDCPVFE-------------- 42
           K+      D G   +  NHP+K  R+          NL ++  + +              
Sbjct: 2   KVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFHT 61

Query: 43  -----------------------------------NLFEFCQIYAGGTIDAARRLNNQLC 67
                                               +F    +  G T+ A         
Sbjct: 62  EDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLKGNV 121

Query: 68  DIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHAR-VLYIDIDVHHGDGVEEAFY 126
               N AGG+HHA K  A+GFCYIN+  +GI  L K   + +LYID+D HH DGV+EAFY
Sbjct: 122 A--FNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAFY 179

Query: 127 FTDRVMTVSFHKFGDLFFPG-TGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS 185
            TD+V  +S H+  +  FP   G ++EIGE +GK Y +N+PL  G++D  F    +  + 
Sbjct: 180 DTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLE 239

Query: 186 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKE 245
            V E + P   +LQ G D L  D L  FNLS     +    V++     +  GGGGY   
Sbjct: 240 IVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPY 299

Query: 246 NVARCWTVETGILLDTELPNEIPEN--EYIKYFAPEC--SLRIPNGHIENLNSKSYLSTI 301
            +AR WT+    L   E+P ++     E +K    E        +  +E L        +
Sbjct: 300 ALARAWTLIWCELSGREVPEKLNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEV 359

Query: 302 KMQVLENLRSI 312
           + +V + L   
Sbjct: 360 RKEVKDTLEKA 370


>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 386

 Score =  130 bits (328), Expect = 3e-35
 Identities = 62/300 (20%), Positives = 116/300 (38%), Gaps = 27/300 (9%)

Query: 26  MKPHRLYNLGEDCPVFENL-FEFCQIYAGGTIDAARRLNNQLCDIAINWAGGL-HHAKKC 83
           M P     +  D    E       +  AG   D A ++ ++             HHA   
Sbjct: 101 MLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHS 160

Query: 84  EASGFCYINDLVLGILELLKYH--ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGD 141
            A GFC+ N + +   +L +    +++L +D DVHHG+G ++ FY    V+ +S H+  D
Sbjct: 161 TAMGFCFFNSVAIACRQLQQQSKASKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDD 220

Query: 142 LFF-PGTGDVKEIGEREGKFYAINVPLKD----GIDDTSFTRLFKTIISKVVETYAPGAI 196
             F PG+G V E+G   G+ + +NV         + D  +   F+ ++  +   ++P  +
Sbjct: 221 GNFFPGSGAVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLV 280

Query: 197 VLQCGADSLAGD--RLGCFNLSIDGHAECVRFVKKF-NLPLLVTGGGGYTKENVARCWTV 253
           ++  G D+  G    LG +++S        + +       +++   GG+    +      
Sbjct: 281 LVSAGFDAAEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEA 340

Query: 254 ETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQ 313
               LL   +    P +E      P            NLN+   L  +     +    +Q
Sbjct: 341 CVAALLGNRVD---PLSEEGWKQKP------------NLNAIRSLEAVIRVHSKYWGCMQ 385



 Score = 25.7 bits (55), Expect = 9.4
 Identities = 5/31 (16%), Positives = 6/31 (19%), Gaps = 9/31 (29%)

Query: 21 GPNHPMKPHRL---------YNLGEDCPVFE 42
             HP    R+           L   C    
Sbjct: 24 NSRHPEHAGRIQSIWSRLQERGLRSQCECLR 54


>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
           7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 342

 Score = 26.7 bits (57), Expect = 4.5
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 217 IDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDT 261
           + GH + V    +F    +V+G      +N  + W+  TG  L T
Sbjct: 12  LKGHDDHVITCLQFCGNRIVSGS----DDNTLKVWSAVTGKCLRT 52


>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
           {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 225

 Score = 26.1 bits (56), Expect = 7.1
 Identities = 15/141 (10%), Positives = 44/141 (31%), Gaps = 7/141 (4%)

Query: 235 LVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRI-------PNG 287
           L++G        +     +   +  +        +    K+F+ E + +         + 
Sbjct: 41  LLSGNVIPVVYALKIFLGINGPVFGENGGIMFDNDGSIKKFFSNEGTNKFLEEMSKRTSM 100

Query: 288 HIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHT 347
                N     ST      E++  ++     +   +    Y        ++    +++  
Sbjct: 101 RSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIFYSGYSWHLMNRGEDKAFAVNKLK 160

Query: 348 QDKQIQRDDEFYEGDNDNDHM 368
           +   ++ D+    GD++ND  
Sbjct: 161 EMYSLEYDEILVIGDSNNDMP 181


>d1fvpa_ c.1.16.2 (A:) Non-fluorescent flavoprotein (luxF, FP390)
           {Photobacterium phosphoreum [TaxId: 659]}
          Length = 231

 Score = 25.8 bits (56), Expect = 8.7
 Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 326 DFYIPEFDEDEQNPDERMDQHTQD-KQIQRDDEFYEGDNDNDH 367
            F++  +++ +Q P + M+   +  + I  D   Y+  N +DH
Sbjct: 8   VFFVNFYNKGQQEPSKTMNNALETLRIIDEDTSIYDVINIDDH 50


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,503,392
Number of extensions: 74181
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 17
Length of query: 371
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 284
Effective length of database: 1,213,086
Effective search space: 344516424
Effective search space used: 344516424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)