Query 017485
Match_columns 371
No_of_seqs 440 out of 1268
Neff 12.0
Searched_HMMs 29240
Date Mon Mar 25 15:11:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.6E-40 5.5E-45 294.6 32.2 346 2-362 129-486 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 3.3E-30 1.1E-34 226.0 12.2 304 2-339 122-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 3.6E-26 1.2E-30 199.5 26.4 281 2-335 120-428 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 1.1E-23 3.8E-28 186.5 19.5 330 2-344 111-477 (491)
5 2gfp_A EMRD, multidrug resista 99.9 2.1E-24 7.2E-29 184.4 7.4 269 2-325 91-362 (375)
6 2cfq_A Lactose permease; trans 99.8 1.3E-21 4.5E-26 169.2 8.2 295 3-345 104-406 (417)
7 2xut_A Proton/peptide symporte 99.8 1.8E-20 6.1E-25 167.3 10.5 83 2-87 112-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.7 5.4E-16 1.8E-20 135.7 11.2 184 149-344 27-212 (451)
9 3o7q_A L-fucose-proton symport 99.6 1.3E-15 4.6E-20 132.6 12.1 155 151-317 27-182 (438)
10 2gfp_A EMRD, multidrug resista 99.6 9.4E-15 3.2E-19 124.6 9.3 174 156-344 6-180 (375)
11 4aps_A DI-OR tripeptide H+ sym 99.6 1.5E-13 5.2E-18 121.5 17.3 169 152-335 15-192 (491)
12 2xut_A Proton/peptide symporte 99.5 7.8E-14 2.7E-18 124.4 14.3 168 155-337 17-196 (524)
13 4gc0_A D-xylose-proton symport 99.5 4.7E-13 1.6E-17 118.3 13.5 152 190-342 59-223 (491)
14 2cfq_A Lactose permease; trans 99.0 6.2E-11 2.1E-15 102.3 3.1 161 151-324 8-172 (417)
15 2g9p_A Antimicrobial peptide l 65.2 4.9 0.00017 17.4 1.8 14 205-218 2-15 (26)
16 3arc_T Photosystem II reaction 44.5 23 0.0008 17.1 2.4 11 83-93 18-28 (32)
17 2i68_A Protein EMRE; transmemb 26.7 1.3E+02 0.0045 20.6 5.0 6 329-334 94-99 (137)
18 4f35_D Transporter, NADC famil 25.0 3.2E+02 0.011 23.2 9.1 13 205-217 106-118 (449)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.6e-40 Score=294.61 Aligned_cols=346 Identities=27% Similarity=0.503 Sum_probs=266.6
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccC-----CCcchHHHHhhhHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIK-----GGWGWRISLAMAAA 76 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~Wr~~f~~~~~ 76 (371)
|+++|+++|++.|+..+.+..+++|++|+++|++..++.+.+..+|.++++.++....... +.++||+.+.+..+
T Consensus 129 l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (491)
T 4gc0_A 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECI 208 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhh
Confidence 5789999999999999999999999999999999999999999999999999887665432 23579999999999
Q ss_pred HHHHHHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHH
Q 017485 77 PASILTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAIL 156 (371)
Q Consensus 77 ~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
+.++..+..+++||||+|+..|++ .+++++.+++.++.+..+++..+..+....+++.. .... ....++......
T Consensus 209 ~~~~~~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~ 283 (491)
T 4gc0_A 209 PALLFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG---GRLL-MFGVGVIVIGVM 283 (491)
T ss_dssp HHHHHHHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---THHH-HSCCTHHHHHHH
T ss_pred hhhhhhhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh---hHHH-HhcccHHHHHHH
Confidence 999988889999999999999999 88888888877665544443333322222111111 1111 122344555666
Q ss_pred HHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 157 IPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
...+.+..+.+.+..|.|.+.+..+.+..... .......+..+++.++++++.||+|||+.++.+...+.++.+.++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~ 362 (491)
T 4gc0_A 284 LSIFQQFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA 362 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence 67777788888899999999999888887777 77788889999999999999999999999999888888877766654
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF 316 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (371)
.. .....+..+....++..+++.++.++.+.+.+|++|++.|+++.|+.++.+++++++++.+.+.+.+..
T Consensus 363 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~ 433 (491)
T 4gc0_A 363 FY---------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS 433 (491)
T ss_dssp HH---------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH
T ss_pred Hh---------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 112234445555566666667777888899999999999999999999999999999998887664432
Q ss_pred ------c-cchhhHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhcCccccc
Q 017485 317 ------K-AGIFFFFGGWVIVMTTFMHLFLPETKNVPIEQMDKVWRQHWFWKK 362 (371)
Q Consensus 317 ------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (371)
+ ...++++++++++..++.++++||||+|++||+++.++++.++++
T Consensus 434 ~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 434 WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-------
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcccc
Confidence 2 335566777777777888899999999999999988876655443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.96 E-value=3.3e-30 Score=225.99 Aligned_cols=304 Identities=15% Similarity=0.043 Sum_probs=211.4
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcc-hHHHHhhhHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWG-WRISLAMAAAPASI 80 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-Wr~~f~~~~~~~~~ 80 (371)
++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+. .| ||+.|++.+++.++
T Consensus 122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~ 198 (451)
T 1pw4_A 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAIL 198 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999876542 45 99999999988877
Q ss_pred HHHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhh-hhccchhHHHHHHHHH
Q 017485 81 LTVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKI-IQRKYRPQLVMAILIP 158 (371)
Q Consensus 81 ~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 158 (371)
..+. ++++||+|+....+++ ++. ..+.+.+.+ . +++++.+.++. .+...+++.++...+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (451)
T 1pw4_A 199 VALFAFAMMRDTPQSCGLPPI--EEY---------KNDYPDDYN----E---KAEQELTAKQIFMQYVLPNKLLWYIAIA 260 (451)
T ss_dssp HHHHHHHHCCCSSTTTCCCSC--TTT---------CCC--------------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhhccCCHhhcCCCCh--hhh---------cccccccch----h---hhhcccccccchHHHHHcCHHHHHHHHH
Confidence 6655 5678998864221111 000 000000000 0 00011112222 1223334455556666
Q ss_pred HHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh--CchHHHHHHHHHHH-HHHHHHH
Q 017485 159 FFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKL--GRKILFLVGGIQMF-VSQVIIG 234 (371)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~ 234 (371)
.+......+.+..+.|.++++ +|.+..+.+ .......++.+++.++.+++.||+ +||+.+..+..+.. ++.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 339 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 666666777888899999876 899998888 888888999999999999999999 99998877766555 3333222
Q ss_pred HHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHH-HHHHHHHHHHHHH
Q 017485 235 SIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLV-FIFFTAQTFLAML 313 (371)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~ 313 (371)
.. +..+.+.......+.+.+.+.. .+....+..|.+|++.|+++.|+.+....+ +..++|.+.+.+.
T Consensus 340 ~~-----------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~ 407 (451)
T 1pw4_A 340 MN-----------PAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV 407 (451)
T ss_dssp SC-----------CTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh-----------cccCHHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1123344444444454444432 334456778999999999999999999999 9999999999999
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHhc
Q 017485 314 CHFKAGIFFFFGGWVIVMTTFMHLFL 339 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (371)
+..++...+...+++.+.+.+..++.
T Consensus 408 ~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 408 DFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 98887655555555444444444443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=3.6e-26 Score=199.54 Aligned_cols=281 Identities=9% Similarity=0.026 Sum_probs=199.8
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhc-ccCCC----------------
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQ-KIKGG---------------- 64 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~---------------- 64 (371)
++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +..+.
T Consensus 120 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 199 (438)
T 3o7q_A 120 FLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSA 199 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhh
Confidence 5789999999999999999999999999999999999999999999999999998887 43321
Q ss_pred c------chHHHHhhhHHHHHHHHHhhh--cCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhccccccc
Q 017485 65 W------GWRISLAMAAAPASILTVGAL--FMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTIN 136 (371)
Q Consensus 65 ~------~Wr~~f~~~~~~~~~~~~~~~--~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (371)
+ +||+.|++.+++.++..+..+ ..||+++. +++ . +++++.+
T Consensus 200 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~-~---------------------------~~~~~~~ 248 (438)
T 3o7q_A 200 YKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHS-D---------------------------AKQGSFS 248 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCC-C---------------------------SSTTSHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---ccc-c---------------------------ccccchh
Confidence 0 199999888877666555433 35666531 001 0 0011112
Q ss_pred chhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHH-HHHh-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 017485 137 HPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVL-LRTL-KLSESASLLLSAVVTGGIGTVLTIISMILVDKLG 214 (371)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 214 (371)
.++++.++++. ++...+..+........+..+.|.+ +++. |.+..+.+ .......++.+++.++.++++||++
T Consensus 249 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~ 323 (438)
T 3o7q_A 249 ASLSRLARIRH----WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFA 323 (438)
T ss_dssp HHHHHHTTCSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHhChH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444332 3444444455555667777889998 7664 99999888 8888889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHH
Q 017485 215 RKILFLVGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSIT 294 (371)
Q Consensus 215 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 294 (371)
||+.+..+.++..++.+.+... ++.+ ......+.+++.+.. .+..+.+..|.+|++ ++.+.++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~ 387 (438)
T 3o7q_A 324 PHKVLAAYALIAMALCLISAFA-------------GGHV-GLIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFI 387 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------------CHHH-HHHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHc-------------CCcH-HHHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHH
Confidence 9999988887776665554442 1122 233334444554433 355567767888876 88888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-cchhhHHHHHHHHHHHHH
Q 017485 295 VAVCLVFIFFTAQTFLAMLCHFK-AGIFFFFGGWVIVMTTFM 335 (371)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 335 (371)
. .+.+++.++|.+.+.+.+..+ +...+.+.+++.+...+.
T Consensus 388 ~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 388 V-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp H-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 6 677999999999999999988 665555554444443333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.92 E-value=1.1e-23 Score=186.49 Aligned_cols=330 Identities=15% Similarity=0.080 Sum_probs=189.5
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCc--ccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKH--RGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPAS 79 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~ 79 (371)
++++|+++|++.+...+...+++.|++|+++ |+...++++.+.++|..++|.+++.+.+. .|||+.|++.++..+
T Consensus 111 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 111 LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMF 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHH
Confidence 5689999999999999999999999999988 77788889999999999999999988764 459999999877766
Q ss_pred HHHHhhhcC-CCChhh---HHhhCCChHHHHHHHHH----------------HhCccchHHHHHH--HH-------HHhc
Q 017485 80 ILTVGALFM-PETPNS---IIQRSNDPQKAKRMLQR----------------VRGTADVEAELND--LI-------RASS 130 (371)
Q Consensus 80 ~~~~~~~~~-~esp~~---~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~--~~-------~~~~ 130 (371)
+..+..++. |+..+. ...+..+.++.++..+. ..+..+.+..... .. ....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (491)
T 4aps_A 188 IGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAW 267 (491)
T ss_dssp HHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHH
Confidence 655543322 211000 00011112333332222 0011100000000 00 0000
Q ss_pred ccccccchhhhhhhccchhHHHHHHHHHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 017485 131 ISKTINHPFKKIIQRKYRPQLVMAILIPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMIL 209 (371)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l 209 (371)
..++.+.+ .. .+.+....+...+..+.....+.....+.|.+.++ .+.+....+ .......+..+++.++.+++
T Consensus 268 ~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 342 (491)
T 4aps_A 268 MISSVKVT--ST--EHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPLFIMLYTPFFAWL 342 (491)
T ss_dssp HC----------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHHHHHHHHHHHHHH
T ss_pred Hhhccccc--HH--HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchHHHHHHHHHHHHH
Confidence 00000000 00 01111112222323333334445566677777755 566645555 66677788888999999999
Q ss_pred HhhhCchHHHH-----HHHHHHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCch
Q 017485 210 VDKLGRKILFL-----VGGIQMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL 284 (371)
Q Consensus 210 ~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 284 (371)
.||++||+... .+..+..++...+....... .. ....+.+.......+.+.+.+.. .+....+..|.+|+
T Consensus 343 ~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~ 417 (491)
T 4aps_A 343 WTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPK 417 (491)
T ss_dssp HHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTT
T ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCH
Confidence 99999987654 55555555544443321110 00 01123344444455555554433 34556788999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhccCCCC
Q 017485 285 EIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHLFLPETKN 344 (371)
Q Consensus 285 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (371)
+.|+++.|+.+....++..+++.+.+.+.+......+...+++..+..++.+++.++.++
T Consensus 418 ~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 418 AFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp TCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887766544455555555555555555555555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=2.1e-24 Score=184.42 Aligned_cols=269 Identities=14% Similarity=0.116 Sum_probs=189.9
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASIL 81 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~ 81 (371)
+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+. .+||+.|++.+++.++.
T Consensus 91 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 91 LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999999999999888763 46999999999888777
Q ss_pred HHh-hhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 82 TVG-ALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 82 ~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
.+. .+++||+|+. +++ +++.+.++++.+++ +.++...+..+
T Consensus 168 ~~~~~~~~~~~~~~---~~~-------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~ 209 (375)
T 2gfp_A 168 TFSMARWMPETRPV---DAP-------------------------------RTRLLTSYKTLFGN----SGFNCYLLMLI 209 (375)
T ss_dssp HCCCCCSSCCCSTT---TCC-------------------------------CCCTTTCSTHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHCcccCCC---Ccc-------------------------------cccHHHHHHHHhcC----cchHHHHHHHH
Confidence 764 5668887642 111 01112334444433 23444444445
Q ss_pred HHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHH-HHHHHHHHHHHHH
Q 017485 161 QQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQ-MFVSQVIIGSIMA 238 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~ 238 (371)
........+..+.|.++++ +|.+..+.+ .......++.+++.++.+++.||.+++ ...+... ...+...+.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T 2gfp_A 210 GGLAGIAAFEACSGVLMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF 286 (375)
T ss_dssp HHHHHHHHHHHHCSCSSHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 5555666777788888755 888888888 788888899999999999999998873 2222222 2222111111100
Q ss_pred hhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 017485 239 AELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHFKA 318 (371)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (371)
...+.+.......+.+.+.+.. .+....+..|..| ++|+++.|+.+....++..++|.+.+.+.+..++
T Consensus 287 ---------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 355 (375)
T 2gfp_A 287 ---------GVMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG 355 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHH
T ss_pred ---------ccccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 0123344444455555555543 3455677789988 8999999999999999999999999988876665
Q ss_pred chhhHHH
Q 017485 319 GIFFFFG 325 (371)
Q Consensus 319 ~~~~~~~ 325 (371)
...+...
T Consensus 356 ~~~~~~~ 362 (375)
T 2gfp_A 356 SLGLLMT 362 (375)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5544443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=1.3e-21 Score=169.17 Aligned_cols=295 Identities=9% Similarity=0.029 Sum_probs=168.0
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHhhCCC--CcccchhhHHHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHHHH
Q 017485 3 IFGRVLLGIGIGFANQSVPLYLSEMAPP--KHRGAFNIGFQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASI 80 (371)
Q Consensus 3 ~~~R~l~G~~~~~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~ 80 (371)
+.+|++.|++.+..++.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.+++.++
T Consensus 104 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~ 179 (417)
T 2cfq_A 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALI 179 (417)
T ss_dssp CHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHH
Confidence 3456666666555554444444444433 456777777777788888999988887764 3599999988877665
Q ss_pred HHHhhhcCCCChhhHHhhCCChHHHHHHHHHHhCccchHHHHHHHHHHhcccccccchhhhhhhccchhHHHHHHHHHHH
Q 017485 81 LTVGALFMPETPNSIIQRSNDPQKAKRMLQRVRGTADVEAELNDLIRASSISKTINHPFKKIIQRKYRPQLVMAILIPFF 160 (371)
Q Consensus 81 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (371)
..+..++.||+|+. +.+ .++ .. +.+.++....++++.++++ .++...+..+
T Consensus 180 ~~~~~~~~~~~~~~---~~~-~~~----------~~-----------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 230 (417)
T 2cfq_A 180 LAVLLFFAKTDAPS---SAT-VAN----------AV-----------GANHSAFSLKLALELFRQP----KLWFLSLYVI 230 (417)
T ss_dssp HHHHSCSSCCCCSC---SSC-SSS----------SS-----------SSCCCCCCHHHHHHHTTCH----HHHHHHHHHH
T ss_pred HHHHHHHcCccccc---ccc-ccc----------cc-----------ccccccccHHHHHHHhcCC----chhhHHHHHH
Confidence 55555554443310 001 000 00 0000000111223333322 2222222222
Q ss_pred HHhhchhhhHhhHHHHHHHh-CCC---chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 017485 161 QQVTGINIIGLYAPVLLRTL-KLS---ESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSI 236 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~-g~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 236 (371)
.....+..+..+.|.++.+. +.. ....+ .......++.+++.++.++++||+|||+.+..+..+..+..+.+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 309 (417)
T 2cfq_A 231 GVSCTYDVFDQQFANFFTSFFATGEQGTRVFG-YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Confidence 22233344455677776543 221 22234 55666677888899999999999999999887776665554333221
Q ss_pred HHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHhh
Q 017485 237 MAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 315 (371)
.+.+...+...+.+.+... ..+..+.+.+|.+|++.|+++.++. +....+++.++|.+.|.+.+.
T Consensus 310 -------------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~ 375 (417)
T 2cfq_A 310 -------------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp -------------CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred -------------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence 1222222222222322221 1223356779999999999999995 778889999999999999887
Q ss_pred cccchhhHHHHHHHHHH-HHHHHhccCCCCC
Q 017485 316 FKAGIFFFFGGWVIVMT-TFMHLFLPETKNV 345 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 345 (371)
.++...+...+++.+.+ ++.+...||+++.
T Consensus 376 ~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 376 IGFQGAYLVLGLVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTT
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhhcCCCch
Confidence 77544444444443333 3334445554433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.82 E-value=1.8e-20 Score=167.28 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=71.2
Q ss_pred chhhHHHHhhhhHHHHHHHHHHHHhhCCCCcccchhhH---HHHHHHHHHHHHHHHhhhhcccCCCcchHHHHhhhHHHH
Q 017485 2 LIFGRVLLGIGIGFANQSVPLYLSEMAPPKHRGAFNIG---FQVCLAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPA 78 (371)
Q Consensus 2 l~~~R~l~G~~~~~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~ 78 (371)
++++|+++|++.+...+...+++.|++|+++|++..+. .+.+.++|.++++.+++.+.+. .|||+.|++.+++.
T Consensus 112 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~ 188 (524)
T 2xut_A 112 FYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLM 188 (524)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHH
Confidence 56789999999999999999999999999999887776 8899999999999998887764 45999999988887
Q ss_pred HHHHHhhhc
Q 017485 79 SILTVGALF 87 (371)
Q Consensus 79 ~~~~~~~~~ 87 (371)
++..+..++
T Consensus 189 ~~~~~~~~~ 197 (524)
T 2xut_A 189 FVATVFFWL 197 (524)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
Confidence 666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.65 E-value=5.4e-16 Score=135.68 Aligned_cols=184 Identities=14% Similarity=0.089 Sum_probs=138.4
Q ss_pred hHHHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 017485 149 PQLVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFV 228 (371)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 228 (371)
++.+....+..+........+....|.+.+++ .+..+.+ +......++..++.++.|+++||+|||+.+.++.++..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence 44455556666666666667778888888888 8888888 889999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 017485 229 SQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQT 308 (371)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~ 308 (371)
+.+.+...... ..+.+..++..++.+.+.+... +....++.|.+|+++|+.++++.+....+|..++|.+
T Consensus 105 ~~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 174 (451)
T 1pw4_A 105 VMLFMGFVPWA---------TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL 174 (451)
T ss_dssp HHHHHHHCHHH---------HSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhhhhc---------cccHHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88777661100 0334455555666666655443 4555788999999999999999999999999999999
Q ss_pred HHHHHhhcc-cchhhHHHHH-HHHHHHHHHHhccCCCC
Q 017485 309 FLAMLCHFK-AGIFFFFGGW-VIVMTTFMHLFLPETKN 344 (371)
Q Consensus 309 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 344 (371)
.+.+.+..+ |...+...++ ..+..++..++.||++.
T Consensus 175 ~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 175 FLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999888887 7665555444 44444555566776543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.64 E-value=1.3e-15 Score=132.65 Aligned_cols=155 Identities=13% Similarity=0.014 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQ 230 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~ 230 (371)
.+..+.+..+.............|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~ 105 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34444455555555566777788998899999999999 88999999999999999999999999999999999988888
Q ss_pred HHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 017485 231 VIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFL 310 (371)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~ 310 (371)
++...... .++.+..++..++.+.+.+... +....++.|.+|+++|+.+.++.+....+|..+++.+.+
T Consensus 106 ~~~~~~~~----------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 106 ALFWPAAE----------IMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHHH----------TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccc----------cccHHHHHHHHHHHHhhHHHhh-hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77633211 0345556666666666665443 444678899999999999999999999999999999999
Q ss_pred HHH-hhcc
Q 017485 311 AML-CHFK 317 (371)
Q Consensus 311 ~~~-~~~~ 317 (371)
.+. +..+
T Consensus 175 ~l~~~~~~ 182 (438)
T 3o7q_A 175 SLILSNVP 182 (438)
T ss_dssp HHHHTSSC
T ss_pred HHHhcccc
Confidence 888 4443
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.56 E-value=9.4e-15 Score=124.58 Aligned_cols=174 Identities=15% Similarity=0.106 Sum_probs=131.1
Q ss_pred HHHHHHHhhchhhhHhhHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHH
Q 017485 156 LIPFFQQVTGINIIGLYAPVLLRTLKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGS 235 (371)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 235 (371)
.+..+........+....|.+.+++|.+..+.+ +......++..++.++.|+++||+|||+.+..+..+..++......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 333444445556667778888889999999998 8899999999999999999999999999999999888888777666
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 017485 236 IMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCH 315 (371)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (371)
. ++.+..++...+.+.+.+. ..+....++.|.+|+++|++++++.+....++..++|.+.+.+.+.
T Consensus 85 ~-------------~~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 85 T-------------SSLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp H-------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred h-------------ccHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4 3445555555555555543 3345567779999999999999999999999999999999998887
Q ss_pred cccchhhHHHHHHHHHHHH-HHHhccCCCC
Q 017485 316 FKAGIFFFFGGWVIVMTTF-MHLFLPETKN 344 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 344 (371)
.+|...+...++..+...+ ..+..||+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 7766555544443333333 4455666543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.55 E-value=1.5e-13 Score=121.51 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhhchhhhHhhHHHHHH-H-----hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCchHHHHHHHH
Q 017485 152 VMAILIPFFQQVTGINIIGLYAPVLLR-T-----LKLSESASLLLSAVVTGGIGTVLTIISMILVDK-LGRKILFLVGGI 224 (371)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~ 224 (371)
++......+.....++....+.+.+++ + +|.+..+.+ +......++..++.++.|+++|| +|||+.+..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 444444555555666777777777774 4 899999999 88999999999999999999999 899999999988
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCchhhHHHHHHHHHHHHhhhccccccceeeeecccCchhh--hhhhhHHHHHHHHHHH
Q 017485 225 QMFVSQVIIGSIMAAELGDHGGFSEGYAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEI--RSAGQSITVAVCLVFI 302 (371)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~ 302 (371)
+..++.+.+... ++.+..++...+.+.+.+.. .+....++.|.+|++. |+.+.++.+....+|.
T Consensus 94 ~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 159 (491)
T 4aps_A 94 LIMLGHIVLALP-------------FGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA 159 (491)
T ss_dssp HHHHHHHHHHSC-------------CSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHH
Confidence 888777665542 23444555555556555543 3455677899999988 7778888889999999
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH
Q 017485 303 FFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFM 335 (371)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (371)
.++|.+.+.+.+..+|...+...++..+.+.+.
T Consensus 160 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 192 (491)
T 4aps_A 160 FIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLV 192 (491)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999998888766555554444444333
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.54 E-value=7.8e-14 Score=124.38 Aligned_cols=168 Identities=13% Similarity=0.042 Sum_probs=123.9
Q ss_pred HHHHHHHHhhchhhhHhhHHHHH-HHhC------CCchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-CchHHHHHHHHHH
Q 017485 155 ILIPFFQQVTGINIIGLYAPVLL-RTLK------LSESASLLLSAVVTGGIGTVLTIISMILVDKL-GRKILFLVGGIQM 226 (371)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~ 226 (371)
..+..+....+++....+++.++ +++| .+..+.+ +......++..++.++.|+++||+ |||+.+..+.++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 33344444456666777777776 5688 8998888 888899999999999999999999 9999999988888
Q ss_pred HHHHHHHHHHHHhhhCCCCCCchh-hHHHHHHHHHHHHhhhccccccceeeeecccCchhhhhhhhHH---HHHHHHHHH
Q 017485 227 FVSQVIIGSIMAAELGDHGGFSEG-YAYLILVLVCVYSAGFSYSWGPLAWLVPSEIFPLEIRSAGQSI---TVAVCLVFI 302 (371)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~ 302 (371)
.++.+.+... . +.+..++...+.+.+.+.. .+....++.|.+|++.|+.+.+. .+....+|.
T Consensus 96 ~~~~~~~~~~-------------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 96 CVGHAFLAIF-------------EHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp HHHHHHHHHT-------------SSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-------------cccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 7777666553 2 3455555566666665543 34556778999999999876666 888899999
Q ss_pred HHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Q 017485 303 FFTAQTFLAMLCHFKAGIFFFFGGWVIVMTTFMHL 337 (371)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (371)
.++|.+.+.+.+..+|...+.+.++..+...+..+
T Consensus 162 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877776555555444444444433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.47 E-value=4.7e-13 Score=118.34 Aligned_cols=152 Identities=11% Similarity=0.026 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-----CCchhhHHHHHHHHHHHHh
Q 017485 190 LSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVSQVIIGSIMAAELGDHG-----GFSEGYAYLILVLVCVYSA 264 (371)
Q Consensus 190 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 264 (371)
+..+...++.++|+++.|+++||+|||+.+.++.++..++.+..++.......... ..-..+.+..++..++.++
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 66677889999999999999999999999999999988887776642100000000 0001345566666777776
Q ss_pred hhccccccceeeeecccCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhc--------ccchhhHHHHHHHHHHHHHH
Q 017485 265 GFSYSWGPLAWLVPSEIFPLEIRSAGQSITVAVCLVFIFFTAQTFLAMLCHF--------KAGIFFFFGGWVIVMTTFMH 336 (371)
Q Consensus 265 ~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 336 (371)
+.+.. .+....+++|..|++.|+...++.+....++..+++.+........ +|........+..+..++..
T Consensus 139 g~G~~-~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4gc0_A 139 GVGLA-SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLL 217 (491)
T ss_dssp HHHHH-HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHG
T ss_pred HHHHH-HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhh
Confidence 66544 3455688899999999999999998888888888777766554432 13344444455555556666
Q ss_pred HhccCC
Q 017485 337 LFLPET 342 (371)
Q Consensus 337 ~~~~~~ 342 (371)
++.||+
T Consensus 218 ~~~peS 223 (491)
T 4gc0_A 218 YTVPES 223 (491)
T ss_dssp GGSCCC
T ss_pred hcCCCC
Confidence 778886
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.04 E-value=6.2e-11 Score=102.32 Aligned_cols=161 Identities=14% Similarity=0.024 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhchhhhHhhHHHHHHH-hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCchHHHHHHHHHHHHH
Q 017485 151 LVMAILIPFFQQVTGINIIGLYAPVLLRT-LKLSESASLLLSAVVTGGIGTVLTIISMILVDKLGRKILFLVGGIQMFVS 229 (371)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 229 (371)
.++......+..+..+.....+.|.++++ +|.+..+.+ ...+...++..++.++.|+++||+|||+.+..+..+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTG-IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSH-HHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34444444444445556667788888854 899999998 8899999999999999999999999999998877665442
Q ss_pred HHHHHHHHHhhhCCCCCCchhhH-HHHHHHHHHHHhhhccccccceeeeecccCch--hhhhhhhHHHHHHHHHHHHHHH
Q 017485 230 QVIIGSIMAAELGDHGGFSEGYA-YLILVLVCVYSAGFSYSWGPLAWLVPSEIFPL--EIRSAGQSITVAVCLVFIFFTA 306 (371)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~~~~~~~ 306 (371)
...+...... ... ........+.+...+....+. .....+..++ +.++.+.|..+....+|..++|
T Consensus 87 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~ 155 (417)
T 2cfq_A 87 FAPFFIFIFG----------PLLQYNILVGSIVGGIYLGFCFNAG-APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA 155 (417)
T ss_dssp HHHHHHHTHH----------HHHHTTCCHHHHGGGSSTTHHHHTT-HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Confidence 2111110000 000 000111111111111111111 1121222222 3556667777777788889999
Q ss_pred HHHHHHHhhcccchhhHH
Q 017485 307 QTFLAMLCHFKAGIFFFF 324 (371)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ 324 (371)
.+.+.+.+. ++...+..
T Consensus 156 ~l~~~l~~~-~~~~~f~~ 172 (417)
T 2cfq_A 156 SIVGIMFTI-NNQFVFWL 172 (417)
T ss_dssp HHHHHHHHH-CSHHHHTT
T ss_pred HHHHHHHHh-chhHHHHH
Confidence 998888764 44433333
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=65.18 E-value=4.9 Score=17.38 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=11.2
Q ss_pred HHHHHHhhhCchHH
Q 017485 205 ISMILVDKLGRKIL 218 (371)
Q Consensus 205 ~~g~l~d~~grr~~ 218 (371)
+.|.+..|+||+.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788999999865
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=44.51 E-value=23 Score=17.09 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=7.3
Q ss_pred HhhhcCCCChh
Q 017485 83 VGALFMPETPN 93 (371)
Q Consensus 83 ~~~~~~~esp~ 93 (371)
+...+++|.|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 33556788886
No 17
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=26.70 E-value=1.3e+02 Score=20.64 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.2
Q ss_pred HHHHHH
Q 017485 329 IVMTTF 334 (371)
Q Consensus 329 ~~~~~~ 334 (371)
++.+++
T Consensus 94 Ii~GV~ 99 (137)
T 2i68_A 94 ICAGVL 99 (137)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 18
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae}
Probab=25.02 E-value=3.2e+02 Score=23.24 Aligned_cols=13 Identities=15% Similarity=0.115 Sum_probs=6.2
Q ss_pred HHHHHHhhhCchH
Q 017485 205 ISMILVDKLGRKI 217 (371)
Q Consensus 205 ~~g~l~d~~grr~ 217 (371)
++-++..+.|.|+
T Consensus 106 iA~~il~~~g~~~ 118 (449)
T 4f35_D 106 IADKVLAMAQGKM 118 (449)
T ss_dssp HHHHHHHTTCSCT
T ss_pred HHHHHHHHhCCCH
Confidence 3444455555443
Done!