Query 017486
Match_columns 370
No_of_seqs 418 out of 2473
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11670 antiporter inner memb 100.0 4.2E-46 9E-51 362.5 31.0 292 74-369 11-306 (369)
2 KOG3022 Predicted ATPase, nucl 100.0 2.4E-39 5.2E-44 292.1 19.4 203 166-370 40-249 (300)
3 COG0489 Mrp ATPases involved i 100.0 3.8E-32 8.3E-37 253.4 19.6 190 171-369 55-249 (265)
4 cd02037 MRP-like MRP (Multiple 100.0 1.1E-27 2.3E-32 209.5 18.1 157 175-370 1-159 (169)
5 TIGR01007 eps_fam capsular exo 99.9 2.5E-26 5.5E-31 206.8 16.7 171 173-349 17-195 (204)
6 TIGR01969 minD_arch cell divis 99.9 6.5E-26 1.4E-30 210.0 18.2 166 174-347 1-173 (251)
7 CHL00175 minD septum-site dete 99.9 1E-25 2.2E-30 212.8 19.4 172 169-347 11-191 (281)
8 TIGR03029 EpsG chain length de 99.9 1.1E-25 2.4E-30 211.8 17.1 165 172-343 102-274 (274)
9 COG0455 flhG Antiactivator of 99.9 1.7E-25 3.7E-30 207.3 16.2 169 172-347 1-179 (262)
10 TIGR03018 pepcterm_TyrKin exop 99.9 3E-25 6.5E-30 200.4 16.6 162 172-342 34-207 (207)
11 PRK13232 nifH nitrogenase redu 99.9 3.5E-25 7.6E-30 208.3 15.9 170 173-345 1-185 (273)
12 cd02117 NifH_like This family 99.9 1.1E-24 2.4E-29 197.4 16.9 169 174-347 1-188 (212)
13 COG2894 MinD Septum formation 99.9 8.3E-26 1.8E-30 197.9 8.9 170 172-348 1-186 (272)
14 TIGR03371 cellulose_yhjQ cellu 99.9 5.7E-25 1.2E-29 203.3 14.5 171 173-347 1-181 (246)
15 PRK09841 cryptic autophosphory 99.9 1E-24 2.2E-29 230.2 17.6 171 172-348 530-707 (726)
16 TIGR01968 minD_bact septum sit 99.9 2.1E-24 4.5E-29 201.0 17.7 167 173-347 1-176 (261)
17 PRK13869 plasmid-partitioning 99.9 8E-25 1.7E-29 216.0 14.7 173 172-348 120-328 (405)
18 PRK10818 cell division inhibit 99.9 2.5E-24 5.3E-29 202.1 16.8 169 172-347 1-186 (270)
19 TIGR01005 eps_transp_fam exopo 99.9 1.1E-24 2.3E-29 231.9 15.4 174 171-350 544-724 (754)
20 PRK11519 tyrosine kinase; Prov 99.9 3.2E-24 6.9E-29 226.2 18.0 170 172-348 525-702 (719)
21 PRK13236 nitrogenase reductase 99.9 6.1E-24 1.3E-28 201.9 17.0 170 172-344 5-190 (296)
22 PRK13233 nifH nitrogenase redu 99.9 7.5E-24 1.6E-28 199.4 14.4 171 172-345 1-188 (275)
23 PRK13235 nifH nitrogenase redu 99.9 1.7E-23 3.8E-28 196.9 16.1 172 173-345 1-187 (274)
24 PRK13185 chlL protochlorophyll 99.9 3.1E-23 6.8E-28 194.6 17.4 168 172-346 1-186 (270)
25 PHA02519 plasmid partition pro 99.9 1.2E-23 2.6E-28 206.1 14.4 172 172-347 105-307 (387)
26 PRK13705 plasmid-partitioning 99.9 1.1E-23 2.4E-28 206.7 13.3 173 171-347 104-307 (388)
27 TIGR03453 partition_RepA plasm 99.9 1.6E-23 3.4E-28 206.4 14.3 172 172-347 103-310 (387)
28 cd02040 NifH NifH gene encodes 99.9 2.7E-23 5.9E-28 194.8 15.1 169 173-345 1-186 (270)
29 cd03110 Fer4_NifH_child This p 99.9 5E-23 1.1E-27 181.5 14.7 155 175-347 1-156 (179)
30 CHL00072 chlL photochlorophyll 99.9 2.1E-22 4.5E-27 190.7 18.6 165 176-346 3-184 (290)
31 TIGR01281 DPOR_bchL light-inde 99.9 1E-22 2.3E-27 190.9 16.3 166 175-347 2-185 (268)
32 PRK13230 nitrogenase reductase 99.9 1.1E-22 2.5E-27 191.8 15.9 168 173-343 1-184 (279)
33 PRK10037 cell division protein 99.9 5.6E-23 1.2E-27 190.9 13.1 164 173-346 1-175 (250)
34 PRK13234 nifH nitrogenase redu 99.9 7.8E-23 1.7E-27 194.2 14.3 169 173-346 4-190 (295)
35 cd02032 Bchl_like This family 99.9 3.1E-22 6.7E-27 187.6 18.1 165 175-346 2-184 (267)
36 COG1192 Soj ATPases involved i 99.9 8.5E-23 1.8E-27 190.5 13.8 172 172-348 1-191 (259)
37 TIGR03815 CpaE_hom_Actino heli 99.9 3.8E-22 8.3E-27 192.0 18.3 164 171-345 91-266 (322)
38 PRK13231 nitrogenase reductase 99.9 3.4E-22 7.3E-27 187.1 13.7 171 173-346 2-180 (264)
39 TIGR01287 nifH nitrogenase iro 99.9 6.4E-22 1.4E-26 186.3 15.6 167 174-344 1-184 (275)
40 cd02036 MinD Bacterial cell di 99.9 1.6E-21 3.4E-26 171.2 15.7 128 175-348 1-128 (179)
41 cd02033 BchX Chlorophyllide re 99.9 2.6E-21 5.6E-26 184.9 18.0 181 171-370 29-232 (329)
42 PHA02518 ParA-like protein; Pr 99.9 9.4E-22 2E-26 177.4 14.2 141 174-347 1-146 (211)
43 TIGR02016 BchX chlorophyllide 99.9 3.6E-21 7.7E-26 182.7 15.3 181 174-369 1-206 (296)
44 PF06564 YhjQ: YhjQ protein; 99.9 2.4E-21 5.1E-26 176.6 12.7 164 173-348 1-177 (243)
45 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 8.3E-22 1.8E-26 175.2 9.6 157 176-347 1-161 (195)
46 PRK13849 putative crown gall t 99.9 4.1E-21 9E-26 175.9 14.1 146 173-346 1-152 (231)
47 COG1149 MinD superfamily P-loo 99.8 4.9E-20 1.1E-24 167.2 16.7 169 173-346 1-226 (284)
48 cd03111 CpaE_like This protein 99.8 5E-20 1.1E-24 148.6 13.4 102 175-343 1-106 (106)
49 cd00550 ArsA_ATPase Oxyanion-t 99.8 7.4E-21 1.6E-25 177.0 9.0 173 176-349 2-204 (254)
50 cd02035 ArsA ArsA ATPase funct 99.8 1.4E-20 3E-25 171.2 9.3 167 176-348 1-184 (217)
51 COG3640 CooC CO dehydrogenase 99.8 5.2E-19 1.1E-23 157.4 15.4 165 175-347 2-198 (255)
52 cd02038 FleN-like FleN is a me 99.8 6.9E-19 1.5E-23 148.9 14.1 110 175-348 1-111 (139)
53 COG2151 PaaD Predicted metal-s 99.8 2.4E-19 5.3E-24 143.0 9.2 89 71-159 8-96 (111)
54 cd02042 ParA ParA and ParB of 99.8 2.1E-18 4.6E-23 138.3 13.2 99 175-342 1-104 (104)
55 PF07015 VirC1: VirC1 protein; 99.8 8E-18 1.7E-22 151.4 13.0 147 173-347 1-153 (231)
56 PF13614 AAA_31: AAA domain; P 99.7 3.6E-18 7.7E-23 146.9 7.7 141 174-320 1-156 (157)
57 PF09140 MipZ: ATPase MipZ; I 99.7 8.3E-19 1.8E-23 158.3 3.7 129 174-314 1-130 (261)
58 PF02374 ArsA_ATPase: Anion-tr 99.7 6.1E-17 1.3E-21 154.2 10.3 166 174-349 2-251 (305)
59 PF10609 ParA: ParA/MinD ATPas 99.7 8E-17 1.7E-21 121.2 8.1 78 282-359 2-81 (81)
60 COG0541 Ffh Signal recognition 99.7 2.8E-17 6.1E-22 158.3 5.7 226 73-349 20-254 (451)
61 PRK10867 signal recognition pa 99.6 4.8E-16 1E-20 153.6 8.6 225 73-348 20-254 (433)
62 COG0003 ArsA Predicted ATPase 99.6 4E-15 8.7E-20 141.6 14.2 162 174-348 3-250 (322)
63 PF00142 Fer4_NifH: 4Fe-4S iro 99.6 3.3E-15 7.1E-20 136.3 12.3 170 174-346 1-187 (273)
64 COG1348 NifH Nitrogenase subun 99.6 1.4E-14 3E-19 128.6 14.8 173 173-348 1-190 (278)
65 TIGR00959 ffh signal recogniti 99.6 2.9E-15 6.3E-20 148.1 8.6 225 73-348 19-253 (428)
66 TIGR01425 SRP54_euk signal rec 99.6 3.7E-15 8.1E-20 146.6 8.0 226 73-349 20-254 (429)
67 TIGR03406 FeS_long_SufT probab 99.6 4.4E-14 9.5E-19 122.7 12.5 88 73-160 71-161 (174)
68 COG4963 CpaE Flp pilus assembl 99.5 1.4E-13 3E-18 131.2 15.7 171 171-348 102-285 (366)
69 cd03114 ArgK-like The function 99.5 2.1E-13 4.5E-18 116.5 14.8 144 176-345 2-148 (148)
70 PRK00771 signal recognition pa 99.5 2E-14 4.2E-19 142.6 7.9 222 73-348 16-246 (437)
71 TIGR00064 ftsY signal recognit 99.5 1.6E-13 3.6E-18 128.6 13.1 149 172-348 71-231 (272)
72 PF01883 DUF59: Domain of unkn 99.5 8.3E-14 1.8E-18 104.2 8.3 72 77-150 1-72 (72)
73 cd03115 SRP The signal recogni 99.4 3.5E-12 7.5E-17 111.7 14.0 146 175-348 2-153 (173)
74 TIGR00347 bioD dethiobiotin sy 99.4 4.8E-12 1E-16 110.0 11.6 155 178-342 2-166 (166)
75 PRK10416 signal recognition pa 99.4 1.8E-11 4E-16 117.1 15.9 148 173-348 114-273 (318)
76 cd02034 CooC The accessory pro 99.4 3.2E-12 7E-17 104.5 8.8 111 176-311 2-115 (116)
77 cd01983 Fer4_NifH The Fer4_Nif 99.3 1.5E-11 3.2E-16 96.0 11.8 93 178-342 3-99 (99)
78 PRK13886 conjugal transfer pro 99.3 3.2E-11 7E-16 110.3 14.5 48 172-219 1-48 (241)
79 KOG2825 Putative arsenite-tran 99.3 6.7E-12 1.4E-16 112.7 9.0 174 171-347 16-266 (323)
80 TIGR02945 SUF_assoc FeS assemb 99.3 2.9E-11 6.4E-16 96.1 10.3 82 77-159 3-84 (99)
81 TIGR02159 PA_CoA_Oxy4 phenylac 99.3 2.4E-11 5.1E-16 102.8 8.9 71 87-160 1-72 (146)
82 PRK13768 GTPase; Provisional 99.2 4.7E-11 1E-15 111.1 10.9 45 172-217 1-45 (253)
83 PRK11889 flhF flagellar biosyn 99.1 1.1E-09 2.3E-14 106.3 14.6 145 173-348 241-391 (436)
84 PRK00090 bioD dithiobiotin syn 99.1 1.6E-09 3.5E-14 98.6 13.0 162 176-347 2-175 (222)
85 PRK14974 cell division protein 99.1 1.1E-09 2.4E-14 105.4 12.0 227 75-348 58-293 (336)
86 PF00448 SRP54: SRP54-type pro 99.0 1.1E-09 2.3E-14 98.0 10.2 148 173-348 1-154 (196)
87 KOG0780 Signal recognition par 99.0 2.2E-10 4.8E-15 108.8 5.9 228 73-348 21-254 (483)
88 PRK12726 flagellar biosynthesi 99.0 4.3E-09 9.4E-14 101.7 14.7 145 173-348 206-356 (407)
89 TIGR00345 arsA arsenite-activa 99.0 2.5E-09 5.3E-14 101.2 12.1 42 306-347 190-231 (284)
90 TIGR00750 lao LAO/AO transport 99.0 1.7E-08 3.7E-13 96.3 15.9 152 172-347 33-185 (300)
91 PRK12727 flagellar biosynthesi 99.0 6.3E-09 1.4E-13 104.5 12.9 141 173-348 350-498 (559)
92 PRK12724 flagellar biosynthesi 98.9 5.6E-09 1.2E-13 102.4 10.7 140 174-348 224-373 (432)
93 PRK05703 flhF flagellar biosyn 98.9 4E-09 8.6E-14 105.0 9.6 142 173-348 221-371 (424)
94 PRK09435 membrane ATPase/prote 98.8 1E-07 2.2E-12 91.6 14.9 152 171-347 54-207 (332)
95 PRK12723 flagellar biosynthesi 98.8 6.7E-08 1.5E-12 94.8 12.5 142 173-348 174-326 (388)
96 COG0552 FtsY Signal recognitio 98.8 4.8E-08 1E-12 92.2 10.4 149 172-350 138-300 (340)
97 COG1703 ArgK Putative periplas 98.8 2.6E-07 5.7E-12 85.9 15.0 154 169-347 47-202 (323)
98 PRK14493 putative bifunctional 98.7 7.2E-08 1.6E-12 90.5 10.0 129 173-322 1-130 (274)
99 PRK06731 flhF flagellar biosyn 98.7 2.1E-07 4.5E-12 87.1 12.5 145 173-348 75-225 (270)
100 PRK14723 flhF flagellar biosyn 98.7 7.6E-08 1.6E-12 100.9 9.8 144 173-348 185-337 (767)
101 cd03109 DTBS Dethiobiotin synt 98.7 6.8E-07 1.5E-11 75.0 13.4 99 180-347 6-110 (134)
102 COG0132 BioD Dethiobiotin synt 98.6 8.2E-07 1.8E-11 80.4 14.5 167 172-348 1-179 (223)
103 PRK12374 putative dithiobiotin 98.6 1.1E-06 2.4E-11 80.7 14.4 165 172-347 1-177 (231)
104 TIGR03499 FlhF flagellar biosy 98.6 6.5E-08 1.4E-12 91.4 5.4 42 173-215 194-237 (282)
105 PRK01077 cobyrinic acid a,c-di 98.6 1E-06 2.3E-11 88.7 14.3 143 173-346 3-156 (451)
106 PRK05632 phosphate acetyltrans 98.6 1.5E-06 3.3E-11 91.8 15.6 142 172-347 1-155 (684)
107 PRK14722 flhF flagellar biosyn 98.5 8.9E-07 1.9E-11 86.3 11.9 144 173-348 137-295 (374)
108 PF03308 ArgK: ArgK protein; 98.5 4.6E-07 1E-11 83.1 9.0 127 172-317 28-155 (266)
109 TIGR00313 cobQ cobyric acid sy 98.5 2.3E-06 4.9E-11 86.7 14.1 169 176-346 1-197 (475)
110 PF13500 AAA_26: AAA domain; P 98.5 9.7E-07 2.1E-11 79.0 9.7 163 174-347 1-171 (199)
111 PRK06995 flhF flagellar biosyn 98.3 3.1E-06 6.6E-11 85.1 10.8 142 173-348 256-405 (484)
112 PRK00784 cobyric acid synthase 98.3 1.7E-05 3.7E-10 80.8 14.9 38 172-209 1-38 (488)
113 KOG0781 Signal recognition par 98.3 1.9E-06 4.2E-11 84.3 7.3 157 171-347 376-543 (587)
114 COG1419 FlhF Flagellar GTP-bin 98.2 9.2E-06 2E-10 79.0 10.0 142 173-348 203-352 (407)
115 KOG1532 GTPase XAB1, interacts 98.2 1.3E-05 2.8E-10 73.7 10.2 159 173-347 19-194 (366)
116 PRK13505 formate--tetrahydrofo 98.0 7.7E-06 1.7E-10 82.3 6.4 51 172-225 54-107 (557)
117 PF03029 ATP_bind_1: Conserved 98.0 2.8E-06 6E-11 78.3 2.7 40 181-220 3-42 (238)
118 cd00477 FTHFS Formyltetrahydro 98.0 1E-05 2.2E-10 80.5 6.6 52 172-226 37-91 (524)
119 PRK13506 formate--tetrahydrofo 97.9 1.4E-05 3E-10 80.3 6.2 51 172-225 53-106 (578)
120 TIGR00379 cobB cobyrinic acid 97.8 0.0003 6.5E-09 70.9 13.5 35 176-210 2-36 (449)
121 PRK06278 cobyrinic acid a,c-di 97.8 0.00044 9.5E-09 69.8 14.2 146 169-346 234-395 (476)
122 COG1341 Predicted GTPase or GT 97.8 0.00038 8.2E-09 67.7 13.1 42 175-217 75-116 (398)
123 cd04170 EF-G_bact Elongation f 97.8 0.00013 2.9E-09 68.4 9.8 69 278-347 61-129 (268)
124 PRK14721 flhF flagellar biosyn 97.7 0.0005 1.1E-08 68.3 12.3 141 173-348 191-340 (420)
125 cd00881 GTP_translation_factor 97.6 0.0005 1.1E-08 59.9 9.9 68 279-347 60-127 (189)
126 COG1160 Predicted GTPases [Gen 97.6 0.00051 1.1E-08 67.7 10.6 81 278-359 48-140 (444)
127 cd04167 Snu114p Snu114p subfam 97.6 0.00062 1.4E-08 61.5 10.4 68 279-347 69-136 (213)
128 cd04168 TetM_like Tet(M)-like 97.6 0.00092 2E-08 61.6 11.5 69 278-347 61-129 (237)
129 cd01884 EF_Tu EF-Tu subfamily. 97.6 0.00045 9.8E-09 61.7 9.1 69 278-347 62-131 (195)
130 cd01886 EF-G Elongation factor 97.5 0.0012 2.6E-08 62.1 11.9 69 278-347 61-129 (270)
131 COG1797 CobB Cobyrinic acid a, 97.5 0.0017 3.6E-08 63.8 12.7 141 175-348 2-155 (451)
132 cd04163 Era Era subfamily. Er 97.5 0.0015 3.2E-08 55.2 10.7 68 279-347 49-124 (168)
133 PRK13896 cobyrinic acid a,c-di 97.4 0.0025 5.3E-08 63.7 13.6 142 174-347 2-152 (433)
134 cd04169 RF3 RF3 subfamily. Pe 97.4 0.0012 2.5E-08 62.0 10.7 69 278-347 68-136 (267)
135 KOG1533 Predicted GTPase [Gene 97.4 0.0003 6.4E-09 63.5 5.8 99 181-292 9-108 (290)
136 TIGR00176 mobB molybdopterin-g 97.4 0.00068 1.5E-08 58.3 7.7 38 175-213 1-38 (155)
137 cd01120 RecA-like_NTPases RecA 97.4 0.0011 2.4E-08 56.1 8.9 38 178-215 3-40 (165)
138 COG0529 CysC Adenylylsulfate k 97.4 0.0003 6.5E-09 61.0 5.2 52 172-224 22-73 (197)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 97.4 0.003 6.5E-08 53.9 11.5 68 279-347 48-115 (168)
140 cd03112 CobW_like The function 97.3 0.0045 9.8E-08 53.3 12.2 142 178-345 4-157 (158)
141 PRK00089 era GTPase Era; Revie 97.3 0.0044 9.6E-08 58.7 13.2 68 279-347 51-126 (292)
142 TIGR02237 recomb_radB DNA repa 97.3 0.00055 1.2E-08 61.5 6.6 38 174-212 13-50 (209)
143 PRK04296 thymidine kinase; Pro 97.3 0.0091 2E-07 53.0 14.1 34 174-208 3-36 (190)
144 COG1763 MobB Molybdopterin-gua 97.3 0.0017 3.7E-08 56.0 8.7 42 172-214 1-42 (161)
145 PF00009 GTP_EFTU: Elongation 97.3 0.00031 6.8E-09 62.0 4.3 68 278-347 67-135 (188)
146 PRK14494 putative molybdopteri 97.2 0.0013 2.8E-08 60.1 8.3 38 173-211 1-38 (229)
147 PF01583 APS_kinase: Adenylyls 97.1 0.00062 1.3E-08 58.4 4.7 45 174-219 3-47 (156)
148 cd01894 EngA1 EngA1 subfamily. 97.1 0.004 8.6E-08 52.3 9.8 68 279-347 43-118 (157)
149 PRK00889 adenylylsulfate kinas 97.1 0.00099 2.2E-08 58.1 5.9 41 173-214 4-44 (175)
150 PF03205 MobB: Molybdopterin g 97.1 0.0014 3E-08 55.4 6.5 43 174-217 1-44 (140)
151 PRK00093 GTP-binding protein D 97.1 0.0032 7E-08 63.1 10.1 68 279-347 47-122 (435)
152 TIGR00490 aEF-2 translation el 97.0 0.0022 4.8E-08 68.5 9.0 69 278-347 83-151 (720)
153 cd01891 TypA_BipA TypA (tyrosi 97.0 0.012 2.5E-07 52.2 12.1 68 279-347 63-130 (194)
154 COG1618 Predicted nucleotide k 97.0 0.0067 1.5E-07 52.0 9.7 38 172-210 4-41 (179)
155 cd01885 EF2 EF2 (for archaea a 97.0 0.0063 1.4E-07 55.5 10.2 68 279-347 71-138 (222)
156 cd04165 GTPBP1_like GTPBP1-lik 97.0 0.0058 1.3E-07 55.8 9.9 67 279-347 82-151 (224)
157 PRK14495 putative molybdopteri 97.0 0.0031 6.7E-08 62.5 8.4 38 173-211 1-38 (452)
158 cd04166 CysN_ATPS CysN_ATPS su 97.0 0.0073 1.6E-07 54.3 10.3 69 278-347 74-143 (208)
159 PRK00049 elongation factor Tu; 96.9 0.0081 1.8E-07 59.6 11.2 68 279-347 73-141 (396)
160 cd04171 SelB SelB subfamily. 96.9 0.0051 1.1E-07 52.1 8.6 67 280-347 50-117 (164)
161 PLN03127 Elongation factor Tu; 96.9 0.013 2.8E-07 59.1 12.6 68 279-347 122-190 (447)
162 TIGR00503 prfC peptide chain r 96.9 0.0071 1.5E-07 62.2 10.9 68 278-347 77-145 (527)
163 PRK12740 elongation factor G; 96.9 0.0045 9.7E-08 65.7 9.7 69 278-347 57-125 (668)
164 cd01125 repA Hexameric Replica 96.9 0.0013 2.8E-08 60.6 4.7 40 175-214 2-53 (239)
165 PRK08233 hypothetical protein; 96.9 0.005 1.1E-07 53.7 8.1 37 174-213 4-40 (182)
166 TIGR00436 era GTP-binding prot 96.9 0.022 4.7E-07 53.5 13.0 67 279-347 46-120 (270)
167 PRK00007 elongation factor G; 96.9 0.006 1.3E-07 64.9 10.2 68 278-347 72-140 (693)
168 cd01394 radB RadB. The archaea 96.8 0.0021 4.6E-08 58.1 5.9 39 175-213 20-58 (218)
169 PRK07667 uridine kinase; Provi 96.8 0.0024 5.2E-08 56.9 6.1 39 174-213 18-56 (193)
170 COG1159 Era GTPase [General fu 96.8 0.0091 2E-07 56.0 10.0 113 175-348 8-128 (298)
171 TIGR01394 TypA_BipA GTP-bindin 96.8 0.0094 2E-07 62.1 11.0 68 278-347 61-129 (594)
172 TIGR02012 tigrfam_recA protein 96.8 0.0027 5.8E-08 61.0 6.4 38 174-212 56-93 (321)
173 cd00561 CobA_CobO_BtuR ATP:cor 96.8 0.0052 1.1E-07 52.9 7.6 34 175-209 4-37 (159)
174 PF02492 cobW: CobW/HypB/UreG, 96.8 0.0031 6.8E-08 55.3 6.4 143 177-347 3-154 (178)
175 PLN02974 adenosylmethionine-8- 96.8 0.027 5.9E-07 60.7 14.5 66 279-345 183-254 (817)
176 PRK08533 flagellar accessory p 96.8 0.0072 1.6E-07 55.4 8.9 40 174-214 25-64 (230)
177 PRK00741 prfC peptide chain re 96.7 0.015 3.2E-07 59.9 11.7 69 278-347 76-144 (526)
178 PRK10218 GTP-binding protein; 96.7 0.025 5.4E-07 59.1 13.4 68 278-347 65-133 (607)
179 PRK10751 molybdopterin-guanine 96.7 0.02 4.3E-07 50.1 10.7 41 172-213 5-45 (173)
180 PRK12739 elongation factor G; 96.7 0.0085 1.8E-07 63.8 9.9 69 278-347 70-138 (691)
181 smart00382 AAA ATPases associa 96.7 0.005 1.1E-07 50.0 6.5 40 174-214 3-42 (148)
182 TIGR01618 phage_P_loop phage n 96.7 0.006 1.3E-07 55.4 7.3 35 171-213 10-44 (220)
183 TIGR00708 cobA cob(I)alamin ad 96.6 0.0075 1.6E-07 52.6 7.5 35 175-210 7-41 (173)
184 PRK09361 radB DNA repair and r 96.6 0.0038 8.3E-08 56.7 6.0 37 174-211 24-60 (225)
185 KOG1534 Putative transcription 96.6 0.0033 7.1E-08 56.0 5.1 46 173-218 2-47 (273)
186 PF01926 MMR_HSR1: 50S ribosom 96.6 0.014 3E-07 47.0 8.6 62 280-343 46-116 (116)
187 PRK03846 adenylylsulfate kinas 96.6 0.0039 8.5E-08 55.6 5.8 43 171-214 22-64 (198)
188 cd04160 Arfrp1 Arfrp1 subfamil 96.6 0.039 8.5E-07 47.0 11.9 68 279-347 48-120 (167)
189 cd04161 Arl2l1_Arl13_like Arl2 96.6 0.022 4.7E-07 49.1 10.3 68 279-347 41-113 (167)
190 PRK06067 flagellar accessory p 96.6 0.006 1.3E-07 55.9 6.8 38 174-212 26-63 (234)
191 cd00880 Era_like Era (E. coli 96.5 0.02 4.4E-07 47.3 9.3 68 280-348 44-118 (163)
192 cd01393 recA_like RecA is a b 96.5 0.0077 1.7E-07 54.6 7.1 38 174-212 20-63 (226)
193 PF13479 AAA_24: AAA domain 96.5 0.011 2.3E-07 53.6 7.9 31 175-214 5-35 (213)
194 cd00983 recA RecA is a bacter 96.5 0.0059 1.3E-07 58.7 6.4 38 174-212 56-93 (325)
195 CHL00071 tufA elongation facto 96.5 0.034 7.3E-07 55.5 12.1 68 279-347 73-141 (409)
196 TIGR00484 EF-G translation elo 96.5 0.017 3.7E-07 61.5 10.4 69 278-347 72-140 (689)
197 cd01889 SelB_euk SelB subfamil 96.4 0.019 4.2E-07 50.6 9.0 67 279-347 66-133 (192)
198 PRK12736 elongation factor Tu; 96.4 0.028 6E-07 55.8 11.0 68 279-347 73-141 (394)
199 PRK06696 uridine kinase; Valid 96.4 0.0061 1.3E-07 55.5 5.8 40 174-214 23-62 (223)
200 PHA02542 41 41 helicase; Provi 96.4 0.0048 1E-07 62.5 5.5 43 175-217 191-233 (473)
201 cd01890 LepA LepA subfamily. 96.4 0.032 7E-07 48.2 10.0 67 279-347 65-132 (179)
202 cd01124 KaiC KaiC is a circadi 96.4 0.0051 1.1E-07 53.8 4.9 37 178-214 3-39 (187)
203 PRK06762 hypothetical protein; 96.4 0.0049 1.1E-07 53.2 4.6 39 172-214 1-39 (166)
204 PRK12735 elongation factor Tu; 96.4 0.034 7.3E-07 55.2 11.2 68 279-347 73-141 (396)
205 cd01878 HflX HflX subfamily. 96.4 0.065 1.4E-06 47.6 12.1 67 280-347 88-166 (204)
206 cd01883 EF1_alpha Eukaryotic e 96.3 0.012 2.7E-07 53.3 7.3 69 278-347 74-150 (219)
207 PRK05973 replicative DNA helic 96.3 0.0055 1.2E-07 56.3 4.9 39 175-213 65-103 (237)
208 cd03116 MobB Molybdenum is an 96.3 0.0089 1.9E-07 51.6 6.0 41 173-214 1-41 (159)
209 TIGR00485 EF-Tu translation el 96.3 0.043 9.3E-07 54.5 11.5 68 279-347 73-141 (394)
210 cd02028 UMPK_like Uridine mono 96.3 0.0057 1.2E-07 53.8 4.7 38 176-214 2-39 (179)
211 TIGR03594 GTPase_EngA ribosome 96.3 0.035 7.5E-07 55.5 10.9 69 279-348 45-121 (429)
212 PRK07952 DNA replication prote 96.3 0.0056 1.2E-07 56.6 4.7 34 177-210 102-135 (244)
213 cd02027 APSK Adenosine 5'-phos 96.3 0.0061 1.3E-07 51.9 4.6 36 179-214 4-39 (149)
214 cd00154 Rab Rab family. Rab G 96.2 0.04 8.8E-07 45.8 9.6 68 279-347 47-118 (159)
215 cd01882 BMS1 Bms1. Bms1 is an 96.2 0.064 1.4E-06 48.9 11.5 65 280-347 82-146 (225)
216 PRK14489 putative bifunctional 96.2 0.015 3.3E-07 57.1 7.7 43 171-214 203-245 (366)
217 PLN03126 Elongation factor Tu; 96.2 0.048 1E-06 55.4 11.5 68 279-347 142-210 (478)
218 PRK05986 cob(I)alamin adenolsy 96.2 0.023 5E-07 50.4 8.0 35 175-210 24-58 (191)
219 PRK15453 phosphoribulokinase; 96.2 0.0089 1.9E-07 56.1 5.7 42 173-215 5-46 (290)
220 PRK13351 elongation factor G; 96.2 0.026 5.7E-07 60.1 10.0 69 278-347 70-138 (687)
221 PRK15494 era GTPase Era; Provi 96.2 0.074 1.6E-06 51.7 12.4 67 279-347 98-173 (339)
222 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.0085 1.8E-07 54.7 5.5 39 174-213 20-64 (235)
223 TIGR02655 circ_KaiC circadian 96.2 0.0093 2E-07 60.8 6.2 40 175-214 264-303 (484)
224 smart00175 RAB Rab subfamily o 96.2 0.089 1.9E-06 44.4 11.4 67 280-347 48-118 (164)
225 PF13207 AAA_17: AAA domain; P 96.1 0.0075 1.6E-07 48.9 4.4 31 176-210 2-32 (121)
226 PRK03003 GTP-binding protein D 96.1 0.057 1.2E-06 54.9 11.6 68 279-347 84-159 (472)
227 PRK05306 infB translation init 96.1 0.058 1.3E-06 58.0 12.1 68 279-347 335-402 (787)
228 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.019 4.2E-07 52.7 7.5 39 174-213 22-60 (237)
229 PTZ00416 elongation factor 2; 96.1 0.03 6.6E-07 60.8 9.9 68 279-347 90-157 (836)
230 PRK09354 recA recombinase A; P 96.1 0.015 3.2E-07 56.5 6.6 38 174-212 61-98 (349)
231 TIGR00682 lpxK tetraacyldisacc 96.1 0.044 9.6E-07 52.5 9.8 42 173-214 28-70 (311)
232 cd04124 RabL2 RabL2 subfamily. 96.0 0.088 1.9E-06 44.8 10.9 67 279-346 47-116 (161)
233 cd01888 eIF2_gamma eIF2-gamma 96.0 0.075 1.6E-06 47.5 10.8 66 281-347 83-150 (203)
234 KOG0635 Adenosine 5'-phosphosu 96.0 0.016 3.4E-07 49.1 5.8 54 169-223 27-80 (207)
235 cd04139 RalA_RalB RalA/RalB su 96.0 0.07 1.5E-06 45.0 10.2 68 279-347 46-118 (164)
236 cd01897 NOG NOG1 is a nucleola 96.0 0.13 2.8E-06 43.7 11.8 68 279-347 45-126 (168)
237 PF06745 KaiC: KaiC; InterPro 96.0 0.0057 1.2E-07 55.6 3.3 39 175-214 21-60 (226)
238 cd01898 Obg Obg subfamily. Th 96.0 0.18 4E-06 42.9 12.6 66 281-347 48-127 (170)
239 PRK00652 lpxK tetraacyldisacch 96.0 0.033 7.1E-07 53.7 8.5 41 174-214 50-91 (325)
240 PF13481 AAA_25: AAA domain; P 96.0 0.01 2.3E-07 52.3 4.7 39 176-214 34-82 (193)
241 TIGR03574 selen_PSTK L-seryl-t 95.9 0.0087 1.9E-07 55.4 4.4 36 178-213 3-38 (249)
242 TIGR00487 IF-2 translation ini 95.9 0.084 1.8E-06 55.0 12.0 64 282-346 136-199 (587)
243 cd04162 Arl9_Arfrp2_like Arl9/ 95.9 0.14 3E-06 44.0 11.6 69 279-348 42-113 (164)
244 cd01895 EngA2 EngA2 subfamily. 95.9 0.14 3E-06 43.4 11.6 67 280-347 49-126 (174)
245 cd02029 PRK_like Phosphoribulo 95.9 0.012 2.7E-07 54.8 5.1 40 175-215 1-40 (277)
246 TIGR00455 apsK adenylylsulfate 95.9 0.017 3.7E-07 50.7 5.8 43 171-214 16-58 (184)
247 PRK11537 putative GTP-binding 95.9 0.097 2.1E-06 50.4 11.4 146 175-347 6-163 (318)
248 PRK05480 uridine/cytidine kina 95.9 0.018 3.9E-07 51.7 6.0 39 173-214 6-44 (209)
249 PRK04328 hypothetical protein; 95.8 0.018 4E-07 53.4 6.1 39 174-213 24-62 (249)
250 PF13245 AAA_19: Part of AAA d 95.8 0.018 3.8E-07 43.2 4.8 36 176-211 12-51 (76)
251 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.014 3E-07 54.5 5.1 38 175-212 37-74 (259)
252 PHA00729 NTP-binding motif con 95.8 0.011 2.5E-07 53.7 4.3 24 175-199 19-42 (226)
253 COG0050 TufB GTPases - transla 95.8 0.019 4.1E-07 53.8 5.7 71 279-350 73-144 (394)
254 TIGR00101 ureG urease accessor 95.8 0.08 1.7E-06 47.4 9.7 38 175-214 3-40 (199)
255 COG1066 Sms Predicted ATP-depe 95.8 0.013 2.8E-07 57.3 4.8 37 175-212 94-130 (456)
256 cd04154 Arl2 Arl2 subfamily. 95.8 0.16 3.4E-06 43.8 11.3 67 280-347 57-128 (173)
257 cd04155 Arl3 Arl3 subfamily. 95.7 0.21 4.5E-06 42.8 12.0 68 279-347 56-128 (173)
258 PRK09302 circadian clock prote 95.7 0.027 5.9E-07 57.8 7.4 40 174-214 32-72 (509)
259 TIGR03575 selen_PSTK_euk L-ser 95.7 0.012 2.6E-07 57.0 4.5 39 177-215 2-41 (340)
260 cd00878 Arf_Arl Arf (ADP-ribos 95.7 0.075 1.6E-06 44.8 9.0 67 280-347 42-113 (158)
261 PRK10463 hydrogenase nickel in 95.7 0.032 6.9E-07 52.8 7.0 40 173-214 104-143 (290)
262 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.7 0.16 3.5E-06 43.9 11.1 67 280-347 49-120 (172)
263 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.7 0.46 1E-05 41.0 14.0 67 279-346 57-128 (174)
264 cd01122 GP4d_helicase GP4d_hel 95.7 0.017 3.6E-07 54.0 5.1 38 176-213 32-70 (271)
265 COG3598 RepA RecA-family ATPas 95.7 0.0098 2.1E-07 56.3 3.5 45 175-219 90-144 (402)
266 PRK05541 adenylylsulfate kinas 95.7 0.021 4.6E-07 49.7 5.4 38 174-212 8-45 (176)
267 PRK14491 putative bifunctional 95.7 0.031 6.8E-07 58.4 7.5 41 172-213 9-49 (597)
268 cd00984 DnaB_C DnaB helicase C 95.6 0.02 4.3E-07 52.5 5.2 40 175-214 14-54 (242)
269 cd01867 Rab8_Rab10_Rab13_like 95.6 0.17 3.6E-06 43.3 10.7 67 280-347 51-121 (167)
270 COG2874 FlaH Predicted ATPases 95.5 0.034 7.5E-07 49.9 6.3 104 175-290 29-133 (235)
271 cd04101 RabL4 RabL4 (Rab-like4 95.5 0.15 3.3E-06 43.2 10.2 68 279-347 50-120 (164)
272 smart00174 RHO Rho (Ras homolo 95.5 0.12 2.7E-06 44.2 9.8 69 279-348 44-116 (174)
273 cd04126 Rab20 Rab20 subfamily. 95.5 0.31 6.8E-06 44.3 12.7 68 279-347 42-113 (220)
274 cd04127 Rab27A Rab27a subfamil 95.5 0.22 4.8E-06 42.9 11.4 68 279-347 61-133 (180)
275 cd01866 Rab2 Rab2 subfamily. 95.5 0.14 3.1E-06 43.8 9.9 66 281-347 53-122 (168)
276 PRK05439 pantothenate kinase; 95.5 0.029 6.2E-07 53.7 5.9 41 172-213 85-127 (311)
277 cd02019 NK Nucleoside/nucleoti 95.5 0.027 5.8E-07 41.2 4.5 32 176-210 2-33 (69)
278 cd01860 Rab5_related Rab5-rela 95.4 0.17 3.6E-06 42.8 10.2 68 279-347 48-119 (163)
279 TIGR00475 selB selenocysteine- 95.4 0.042 9.1E-07 57.3 7.5 67 280-347 49-116 (581)
280 COG4088 Predicted nucleotide k 95.4 0.015 3.3E-07 51.8 3.6 39 175-214 3-41 (261)
281 PRK10512 selenocysteinyl-tRNA- 95.4 0.069 1.5E-06 56.0 9.1 66 281-347 51-117 (614)
282 COG0468 RecA RecA/RadA recombi 95.4 0.21 4.6E-06 47.0 11.5 39 173-212 60-98 (279)
283 PRK05433 GTP-binding protein L 95.4 0.087 1.9E-06 55.1 9.8 67 279-347 72-139 (600)
284 COG0480 FusA Translation elong 95.4 0.055 1.2E-06 57.2 8.3 69 278-347 72-141 (697)
285 cd04137 RheB Rheb (Ras Homolog 95.4 0.14 3.1E-06 44.2 9.8 67 280-347 48-119 (180)
286 CHL00189 infB translation init 95.3 0.091 2E-06 56.0 9.7 67 279-347 293-360 (742)
287 PF03796 DnaB_C: DnaB-like hel 95.3 0.029 6.3E-07 52.2 5.3 40 175-214 20-60 (259)
288 PF00485 PRK: Phosphoribulokin 95.2 0.024 5.2E-07 50.4 4.4 37 175-212 1-41 (194)
289 COG1484 DnaC DNA replication p 95.2 0.027 5.9E-07 52.4 4.9 37 173-210 105-141 (254)
290 smart00177 ARF ARF-like small 95.2 0.74 1.6E-05 39.8 13.7 68 279-347 55-127 (175)
291 COG0467 RAD55 RecA-superfamily 95.2 0.034 7.4E-07 51.7 5.5 44 173-217 23-66 (260)
292 cd04110 Rab35 Rab35 subfamily. 95.2 0.25 5.5E-06 43.8 11.0 67 280-347 54-123 (199)
293 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 95.2 0.32 6.9E-06 42.7 11.4 90 279-369 51-152 (182)
294 PRK07560 elongation factor EF- 95.2 0.065 1.4E-06 57.5 8.2 68 279-347 85-152 (731)
295 PF01695 IstB_IS21: IstB-like 95.1 0.028 6E-07 49.4 4.4 37 174-211 48-84 (178)
296 cd04115 Rab33B_Rab33A Rab33B/R 95.1 0.24 5.3E-06 42.4 10.4 68 279-347 49-122 (170)
297 cd04122 Rab14 Rab14 subfamily. 95.1 0.42 9.1E-06 40.7 11.8 69 279-347 49-120 (166)
298 TIGR02475 CobW cobalamin biosy 95.1 0.22 4.9E-06 48.4 11.1 40 176-217 6-45 (341)
299 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.1 0.3 6.4E-06 41.5 10.8 66 280-346 50-119 (166)
300 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.043 9.2E-07 49.9 5.7 39 174-213 21-59 (229)
301 cd04151 Arl1 Arl1 subfamily. 95.1 0.38 8.3E-06 40.5 11.4 68 279-347 41-113 (158)
302 KOG0744 AAA+-type ATPase [Post 95.1 0.038 8.2E-07 52.6 5.3 157 173-334 177-348 (423)
303 COG0523 Putative GTPases (G3E 95.1 0.53 1.1E-05 45.4 13.3 146 175-348 3-159 (323)
304 PF00154 RecA: recA bacterial 95.1 0.21 4.5E-06 48.0 10.5 40 173-213 53-92 (322)
305 TIGR03598 GTPase_YsxC ribosome 95.0 0.29 6.3E-06 42.5 10.6 42 305-347 101-142 (179)
306 PRK09518 bifunctional cytidyla 95.0 0.25 5.4E-06 52.9 12.1 68 279-347 321-396 (712)
307 PRK00093 GTP-binding protein D 95.0 0.19 4.2E-06 50.3 10.7 68 279-347 219-297 (435)
308 cd04156 ARLTS1 ARLTS1 subfamil 95.0 0.48 1E-05 39.8 11.7 66 280-346 43-113 (160)
309 cd02025 PanK Pantothenate kina 95.0 0.036 7.8E-07 50.4 4.8 38 175-213 1-40 (220)
310 TIGR00041 DTMP_kinase thymidyl 95.0 0.045 9.8E-07 48.3 5.4 36 174-210 4-39 (195)
311 smart00173 RAS Ras subfamily o 95.0 0.33 7.2E-06 41.0 10.6 67 280-347 47-118 (164)
312 TIGR03600 phage_DnaB phage rep 95.0 0.038 8.3E-07 55.3 5.4 40 175-214 195-235 (421)
313 PRK07414 cob(I)yrinic acid a,c 94.9 0.16 3.5E-06 44.5 8.5 35 175-210 23-57 (178)
314 TIGR03880 KaiC_arch_3 KaiC dom 94.9 0.053 1.2E-06 49.2 5.8 39 174-213 17-55 (224)
315 cd04142 RRP22 RRP22 subfamily. 94.9 0.38 8.2E-06 42.8 11.2 67 280-347 48-129 (198)
316 cd01874 Cdc42 Cdc42 subfamily. 94.9 0.33 7.1E-06 42.1 10.6 68 279-347 47-118 (175)
317 PLN00116 translation elongatio 94.9 0.11 2.3E-06 56.7 9.0 66 280-347 97-163 (843)
318 cd04109 Rab28 Rab28 subfamily. 94.9 0.39 8.5E-06 43.1 11.4 68 280-347 49-122 (215)
319 TIGR02238 recomb_DMC1 meiotic 94.9 0.062 1.3E-06 51.6 6.3 38 175-212 97-140 (313)
320 PF08433 KTI12: Chromatin asso 94.9 0.033 7.2E-07 52.3 4.4 38 175-213 3-40 (270)
321 cd02023 UMPK Uridine monophosp 94.9 0.037 8E-07 49.2 4.5 36 176-214 2-37 (198)
322 TIGR01393 lepA GTP-binding pro 94.9 0.19 4.2E-06 52.6 10.4 67 279-347 68-135 (595)
323 cd01868 Rab11_like Rab11-like. 94.8 0.3 6.5E-06 41.4 10.0 67 280-347 51-121 (165)
324 cd01861 Rab6 Rab6 subfamily. 94.8 0.33 7.1E-06 40.9 10.1 65 281-346 49-117 (161)
325 cd04125 RabA_like RabA-like su 94.8 0.34 7.3E-06 42.4 10.5 67 280-347 48-118 (188)
326 PRK06526 transposase; Provisio 94.8 0.022 4.8E-07 53.0 2.9 35 175-210 100-134 (254)
327 PLN00223 ADP-ribosylation fact 94.8 1.3 2.7E-05 38.7 14.1 67 279-346 59-130 (181)
328 cd04113 Rab4 Rab4 subfamily. 94.8 0.31 6.7E-06 41.1 9.8 68 279-347 47-118 (161)
329 cd01672 TMPK Thymidine monopho 94.7 0.051 1.1E-06 47.7 5.0 35 175-210 2-36 (200)
330 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 94.7 0.58 1.3E-05 42.6 12.0 90 279-369 47-148 (222)
331 cd04112 Rab26 Rab26 subfamily. 94.7 0.23 5E-06 43.7 9.1 67 280-347 49-119 (191)
332 cd01876 YihA_EngB The YihA (En 94.7 0.42 9.1E-06 40.0 10.5 20 176-196 2-21 (170)
333 PRK09183 transposase/IS protei 94.7 0.049 1.1E-06 50.9 5.0 36 174-210 103-138 (259)
334 cd04148 RGK RGK subfamily. Th 94.7 0.46 9.9E-06 43.1 11.3 66 279-347 48-119 (221)
335 TIGR03420 DnaA_homol_Hda DnaA 94.7 0.049 1.1E-06 49.2 4.8 39 174-213 39-77 (226)
336 PRK05595 replicative DNA helic 94.6 0.05 1.1E-06 54.9 5.3 39 175-213 202-241 (444)
337 cd04136 Rap_like Rap-like subf 94.6 0.41 8.8E-06 40.3 10.2 67 280-347 48-119 (163)
338 cd04146 RERG_RasL11_like RERG/ 94.6 0.45 9.8E-06 40.4 10.5 66 280-346 46-118 (165)
339 PRK12377 putative replication 94.6 0.052 1.1E-06 50.3 4.9 36 175-211 103-138 (248)
340 PRK04004 translation initiatio 94.6 0.29 6.2E-06 51.2 10.8 64 282-347 72-136 (586)
341 cd04144 Ras2 Ras2 subfamily. 94.6 0.54 1.2E-05 41.2 11.2 66 281-347 47-119 (190)
342 cd00009 AAA The AAA+ (ATPases 94.5 0.066 1.4E-06 43.7 5.0 39 174-213 20-58 (151)
343 PRK14734 coaE dephospho-CoA ki 94.5 0.018 3.9E-07 51.6 1.6 32 174-212 2-33 (200)
344 PLN03110 Rab GTPase; Provision 94.5 0.44 9.5E-06 43.0 10.7 67 280-347 60-130 (216)
345 TIGR03594 GTPase_EngA ribosome 94.5 0.27 5.9E-06 49.1 10.2 67 280-347 219-296 (429)
346 TIGR02655 circ_KaiC circadian 94.4 0.078 1.7E-06 54.1 6.2 38 174-212 22-60 (484)
347 COG2403 Predicted GTPase [Gene 94.4 0.059 1.3E-06 52.0 4.9 38 173-210 126-163 (449)
348 cd00879 Sar1 Sar1 subfamily. 94.4 0.56 1.2E-05 40.9 11.0 67 280-347 62-133 (190)
349 KOG2749 mRNA cleavage and poly 94.4 0.071 1.5E-06 51.3 5.4 45 173-218 103-147 (415)
350 cd01865 Rab3 Rab3 subfamily. 94.4 0.71 1.5E-05 39.3 11.3 67 280-347 49-119 (165)
351 PRK08506 replicative DNA helic 94.4 0.063 1.4E-06 54.6 5.4 40 175-214 193-232 (472)
352 cd01863 Rab18 Rab18 subfamily. 94.4 0.53 1.2E-05 39.6 10.5 68 279-347 47-119 (161)
353 PF01935 DUF87: Domain of unkn 94.4 0.071 1.5E-06 48.5 5.3 39 173-212 23-62 (229)
354 cd04138 H_N_K_Ras_like H-Ras/N 94.4 0.66 1.4E-05 38.7 11.0 66 281-347 49-119 (162)
355 PRK13507 formate--tetrahydrofo 94.4 0.071 1.5E-06 54.1 5.6 52 172-226 62-116 (587)
356 PF13173 AAA_14: AAA domain 94.3 0.067 1.5E-06 44.1 4.5 39 174-214 3-41 (128)
357 PRK06217 hypothetical protein; 94.3 0.062 1.3E-06 47.2 4.5 33 174-212 2-34 (183)
358 PTZ00133 ADP-ribosylation fact 94.3 1 2.3E-05 39.3 12.4 67 279-346 59-130 (182)
359 KOG0460 Mitochondrial translat 94.3 0.086 1.9E-06 50.4 5.6 67 282-349 118-185 (449)
360 cd04175 Rap1 Rap1 subgroup. T 94.3 0.53 1.2E-05 39.8 10.2 67 280-347 48-119 (164)
361 KOG3381 Uncharacterized conser 94.2 0.14 3.1E-06 42.9 6.1 59 73-131 32-97 (161)
362 cd04114 Rab30 Rab30 subfamily. 94.2 0.53 1.1E-05 40.0 10.1 66 281-347 56-125 (169)
363 PRK06835 DNA replication prote 94.2 0.054 1.2E-06 52.4 4.3 39 173-212 183-221 (329)
364 cd04104 p47_IIGP_like p47 (47- 94.2 0.91 2E-05 40.2 12.0 63 281-347 52-120 (197)
365 PRK11823 DNA repair protein Ra 94.2 0.081 1.8E-06 53.4 5.7 38 175-212 81-118 (446)
366 PRK06749 replicative DNA helic 94.2 0.066 1.4E-06 53.7 5.0 40 175-214 187-226 (428)
367 PRK01906 tetraacyldisaccharide 94.2 0.17 3.7E-06 49.1 7.6 41 174-214 57-98 (338)
368 PTZ00035 Rad51 protein; Provis 94.2 0.14 3E-06 49.8 7.0 38 174-212 119-162 (337)
369 cd01871 Rac1_like Rac1-like su 94.2 0.71 1.5E-05 40.0 10.9 67 280-347 48-118 (174)
370 TIGR00416 sms DNA repair prote 94.2 0.083 1.8E-06 53.4 5.6 38 175-212 95-132 (454)
371 PF08477 Miro: Miro-like prote 94.1 0.14 3E-06 41.0 5.9 62 283-345 52-119 (119)
372 cd04164 trmE TrmE (MnmE, ThdF, 94.1 0.73 1.6E-05 38.2 10.7 66 279-347 47-120 (157)
373 PRK08118 topology modulation p 94.1 0.065 1.4E-06 46.5 4.2 24 174-198 2-25 (167)
374 cd01121 Sms Sms (bacterial rad 94.1 0.087 1.9E-06 51.8 5.5 38 175-212 83-120 (372)
375 cd01131 PilT Pilus retraction 94.1 1.2 2.6E-05 39.6 12.6 35 175-210 3-38 (198)
376 cd04159 Arl10_like Arl10-like 94.1 0.9 2E-05 37.5 11.2 67 280-347 43-114 (159)
377 COG1492 CobQ Cobyric acid synt 94.1 0.15 3.2E-06 51.2 7.1 169 175-347 3-201 (486)
378 PLN02759 Formate--tetrahydrofo 94.1 0.11 2.3E-06 53.3 6.1 52 172-226 68-123 (637)
379 cd04134 Rho3 Rho3 subfamily. 94.0 0.38 8.3E-06 42.2 9.1 67 280-347 47-117 (189)
380 PLN02924 thymidylate kinase 94.0 0.1 2.2E-06 47.4 5.6 39 170-209 13-51 (220)
381 PF01268 FTHFS: Formate--tetra 94.0 0.057 1.2E-06 54.9 4.1 51 172-225 53-106 (557)
382 TIGR02729 Obg_CgtA Obg family 94.0 0.88 1.9E-05 44.0 12.2 66 281-347 205-286 (329)
383 cd01870 RhoA_like RhoA-like su 94.0 0.76 1.6E-05 39.3 10.8 68 279-347 47-118 (175)
384 PRK09270 nucleoside triphospha 94.0 0.1 2.2E-06 47.7 5.5 39 173-212 33-72 (229)
385 TIGR03156 GTP_HflX GTP-binding 94.0 1.1 2.4E-05 43.7 13.0 67 280-347 236-314 (351)
386 cd01852 AIG1 AIG1 (avrRpt2-ind 94.0 0.4 8.7E-06 42.4 9.2 20 175-195 2-21 (196)
387 PRK12298 obgE GTPase CgtA; Rev 94.0 1.2 2.6E-05 44.2 13.2 65 282-347 208-288 (390)
388 COG2759 MIS1 Formyltetrahydrof 93.9 0.06 1.3E-06 53.1 3.9 52 172-226 51-105 (554)
389 cd00157 Rho Rho (Ras homology) 93.9 0.15 3.4E-06 43.3 6.2 68 279-347 46-117 (171)
390 PRK08760 replicative DNA helic 93.9 0.076 1.7E-06 54.0 4.9 40 175-214 230-270 (476)
391 PRK08903 DnaA regulatory inact 93.9 0.097 2.1E-06 47.5 5.2 37 175-212 44-80 (227)
392 cd00882 Ras_like_GTPase Ras-li 93.9 0.29 6.2E-06 39.6 7.6 69 279-348 43-116 (157)
393 cd00876 Ras Ras family. The R 93.9 0.52 1.1E-05 39.3 9.3 67 280-347 46-117 (160)
394 cd03113 CTGs CTP synthetase (C 93.8 1.4 3E-05 40.6 12.2 164 182-345 10-213 (255)
395 PF02572 CobA_CobO_BtuR: ATP:c 93.8 0.14 3E-06 44.7 5.6 34 176-210 6-39 (172)
396 smart00053 DYNc Dynamin, GTPas 93.8 2.2 4.7E-05 39.4 13.8 69 280-349 124-207 (240)
397 PRK09519 recA DNA recombinatio 93.8 0.16 3.4E-06 54.4 7.0 39 175-213 61-99 (790)
398 PRK08006 replicative DNA helic 93.8 0.095 2.1E-06 53.2 5.2 40 175-214 225-265 (471)
399 cd04119 RJL RJL (RabJ-Like) su 93.7 0.77 1.7E-05 38.6 10.2 68 279-347 47-123 (168)
400 PRK00131 aroK shikimate kinase 93.7 0.073 1.6E-06 45.7 3.9 33 174-212 5-37 (175)
401 PRK03003 GTP-binding protein D 93.7 0.44 9.5E-06 48.5 10.1 43 303-347 292-335 (472)
402 PRK11058 GTPase HflX; Provisio 93.7 1.4 3.1E-05 44.2 13.4 65 282-347 246-322 (426)
403 PRK09554 feoB ferrous iron tra 93.7 0.72 1.6E-05 49.8 12.0 66 279-347 48-125 (772)
404 TIGR00554 panK_bact pantothena 93.7 0.13 2.8E-06 48.8 5.7 41 173-214 62-104 (290)
405 cd04123 Rab21 Rab21 subfamily. 93.7 0.7 1.5E-05 38.6 9.8 67 280-347 48-118 (162)
406 PF05729 NACHT: NACHT domain 93.7 0.079 1.7E-06 44.8 3.9 27 175-202 2-28 (166)
407 TIGR00665 DnaB replicative DNA 93.7 0.1 2.2E-06 52.3 5.4 40 175-214 196-236 (434)
408 TIGR00235 udk uridine kinase. 93.6 0.099 2.1E-06 46.9 4.6 38 173-213 6-43 (207)
409 PRK08939 primosomal protein Dn 93.6 0.1 2.3E-06 49.9 4.9 37 174-211 157-193 (306)
410 cd01862 Rab7 Rab7 subfamily. 93.5 0.42 9E-06 40.6 8.2 66 281-347 49-122 (172)
411 cd04150 Arf1_5_like Arf1-Arf5- 93.5 1.5 3.2E-05 37.2 11.6 68 279-347 42-114 (159)
412 PF12846 AAA_10: AAA-like doma 93.5 0.11 2.4E-06 48.7 4.9 32 180-211 7-38 (304)
413 COG0237 CoaE Dephospho-CoA kin 93.5 0.11 2.3E-06 46.6 4.5 34 172-212 1-34 (201)
414 PRK05748 replicative DNA helic 93.5 0.11 2.4E-06 52.4 5.2 40 175-214 204-244 (448)
415 PRK09518 bifunctional cytidyla 93.5 0.32 6.8E-06 52.2 8.8 68 279-347 496-574 (712)
416 PRK07933 thymidylate kinase; V 93.4 0.13 2.8E-06 46.6 5.0 36 175-211 2-37 (213)
417 COG4240 Predicted kinase [Gene 93.4 0.11 2.5E-06 47.1 4.5 38 175-212 51-89 (300)
418 PRK08840 replicative DNA helic 93.4 0.12 2.5E-06 52.5 5.2 40 175-214 218-258 (464)
419 PRK08727 hypothetical protein; 93.4 0.11 2.3E-06 47.7 4.5 37 175-212 43-79 (233)
420 PRK05642 DNA replication initi 93.3 0.1 2.3E-06 47.8 4.3 35 178-212 49-83 (234)
421 PRK06904 replicative DNA helic 93.3 0.12 2.5E-06 52.6 5.0 40 175-214 222-262 (472)
422 COG3367 Uncharacterized conser 93.3 1.8 4E-05 41.2 12.4 141 173-348 148-302 (339)
423 PRK05506 bifunctional sulfate 93.2 0.13 2.8E-06 54.4 5.3 45 172-217 459-503 (632)
424 PRK04040 adenylate kinase; Pro 93.2 0.13 2.8E-06 45.6 4.6 31 173-205 2-32 (188)
425 cd04117 Rab15 Rab15 subfamily. 93.2 1.7 3.8E-05 36.8 11.5 68 280-347 48-118 (161)
426 PRK06547 hypothetical protein; 93.1 0.12 2.6E-06 45.1 4.1 35 173-213 15-49 (172)
427 PLN03118 Rab family protein; P 93.1 0.43 9.4E-06 42.7 7.9 67 280-347 61-133 (211)
428 PTZ00141 elongation factor 1- 93.1 0.2 4.4E-06 50.5 6.3 68 278-346 82-157 (446)
429 PRK07261 topology modulation p 93.1 0.13 2.8E-06 44.8 4.3 23 175-198 2-24 (171)
430 PRK06893 DNA replication initi 93.1 0.13 2.8E-06 47.1 4.5 36 175-211 41-76 (229)
431 PRK06321 replicative DNA helic 93.0 0.14 3.1E-06 52.0 5.1 40 175-214 227-267 (472)
432 PTZ00386 formyl tetrahydrofola 93.0 0.15 3.2E-06 52.2 5.2 52 172-226 67-122 (625)
433 PRK06851 hypothetical protein; 93.0 0.35 7.6E-06 47.4 7.6 50 170-220 211-260 (367)
434 cd04135 Tc10 TC10 subfamily. 93.0 1 2.2E-05 38.4 10.0 67 280-347 47-117 (174)
435 TIGR02239 recomb_RAD51 DNA rep 93.0 0.27 5.9E-06 47.3 6.8 39 175-213 97-141 (316)
436 PLN03046 D-glycerate 3-kinase; 92.9 0.17 3.6E-06 50.3 5.3 39 173-212 212-250 (460)
437 PF02606 LpxK: Tetraacyldisacc 92.9 0.4 8.7E-06 46.3 7.9 41 174-214 36-77 (326)
438 PRK08181 transposase; Validate 92.9 0.12 2.7E-06 48.4 4.2 36 174-210 107-142 (269)
439 PRK05537 bifunctional sulfate 92.9 0.17 3.7E-06 52.6 5.5 41 173-214 392-433 (568)
440 PRK09165 replicative DNA helic 92.8 0.16 3.4E-06 52.0 5.2 40 175-214 218-272 (497)
441 COG5133 Uncharacterized conser 92.8 0.37 8E-06 40.0 6.2 70 70-139 49-125 (181)
442 COG1936 Predicted nucleotide k 92.8 0.12 2.7E-06 44.8 3.7 20 175-195 2-21 (180)
443 COG1084 Predicted GTPase [Gene 92.8 1.4 3E-05 42.3 10.9 67 279-347 213-293 (346)
444 COG1663 LpxK Tetraacyldisaccha 92.8 0.71 1.5E-05 44.4 9.1 42 173-214 47-89 (336)
445 PRK03731 aroL shikimate kinase 92.7 0.14 3E-06 44.2 4.0 35 173-213 2-36 (171)
446 PLN03186 DNA repair protein RA 92.7 0.32 6.9E-06 47.3 6.9 39 175-213 124-168 (342)
447 PF13086 AAA_11: AAA domain; P 92.7 0.12 2.7E-06 46.2 3.9 35 176-210 19-61 (236)
448 PRK06761 hypothetical protein; 92.7 0.16 3.5E-06 47.9 4.6 41 173-214 3-44 (282)
449 PLN02796 D-glycerate 3-kinase 92.7 0.18 3.9E-06 48.8 5.1 37 174-211 101-137 (347)
450 PRK08116 hypothetical protein; 92.7 0.17 3.6E-06 47.5 4.7 35 176-211 117-151 (268)
451 PF00004 AAA: ATPase family as 92.7 0.19 4E-06 40.8 4.5 30 180-212 4-33 (132)
452 PRK12296 obgE GTPase CgtA; Rev 92.6 1.1 2.4E-05 45.7 10.9 21 175-196 161-181 (500)
453 PF13671 AAA_33: AAA domain; P 92.6 0.087 1.9E-06 43.8 2.5 31 177-212 2-32 (143)
454 PLN03071 GTP-binding nuclear p 92.6 1.1 2.5E-05 40.4 10.0 67 279-346 60-129 (219)
455 PF13604 AAA_30: AAA domain; P 92.5 0.2 4.4E-06 44.6 5.0 36 174-210 19-54 (196)
456 PRK05636 replicative DNA helic 92.5 0.17 3.8E-06 51.7 5.0 40 175-214 266-306 (505)
457 PHA02530 pseT polynucleotide k 92.5 0.12 2.7E-06 48.9 3.7 35 175-213 3-37 (300)
458 cd02021 GntK Gluconate kinase 92.5 0.12 2.7E-06 43.4 3.3 33 177-214 2-34 (150)
459 PRK00698 tmk thymidylate kinas 92.5 0.25 5.4E-06 43.8 5.4 36 173-209 3-38 (205)
460 PRK06921 hypothetical protein; 92.5 0.17 3.8E-06 47.4 4.6 37 173-210 117-154 (266)
461 COG0857 Pta BioD-like N-termin 92.4 0.2 4.4E-06 48.7 5.1 37 172-208 1-37 (354)
462 cd02024 NRK1 Nicotinamide ribo 92.3 0.13 2.9E-06 45.5 3.4 32 176-212 2-33 (187)
463 PRK08084 DNA replication initi 92.3 0.18 3.9E-06 46.3 4.4 37 175-212 47-83 (235)
464 PTZ00301 uridine kinase; Provi 92.3 0.3 6.5E-06 44.1 5.7 40 174-214 4-45 (210)
465 PRK00081 coaE dephospho-CoA ki 92.3 0.17 3.6E-06 45.0 4.0 35 172-213 1-35 (194)
466 cd04177 RSR1 RSR1 subgroup. R 92.3 1.7 3.8E-05 36.9 10.4 67 280-347 48-119 (168)
467 COG2109 BtuR ATP:corrinoid ade 92.3 0.57 1.2E-05 41.3 7.1 35 175-210 30-64 (198)
468 PRK13947 shikimate kinase; Pro 92.2 0.22 4.7E-06 42.9 4.6 32 175-212 3-34 (171)
469 PRK12297 obgE GTPase CgtA; Rev 92.2 2.4 5.2E-05 42.5 12.5 66 280-346 205-286 (424)
470 PRK13946 shikimate kinase; Pro 92.2 0.19 4.2E-06 44.1 4.3 33 174-212 11-43 (184)
471 TIGR00231 small_GTP small GTP- 92.2 0.83 1.8E-05 37.4 8.0 20 175-195 3-22 (161)
472 PF07755 DUF1611: Protein of u 92.1 2 4.3E-05 40.9 11.2 141 172-346 111-269 (301)
473 PRK07004 replicative DNA helic 92.1 0.21 4.5E-06 50.6 5.0 40 175-214 214-254 (460)
474 PF09848 DUF2075: Uncharacteri 92.1 0.2 4.2E-06 48.9 4.6 38 175-212 2-41 (352)
475 TIGR02236 recomb_radA DNA repa 92.0 0.23 5E-06 47.5 4.9 39 175-213 96-140 (310)
476 PF13238 AAA_18: AAA domain; P 92.0 0.15 3.3E-06 41.1 3.2 20 179-198 3-22 (129)
477 PF03266 NTPase_1: NTPase; In 92.0 0.27 5.8E-06 42.8 4.8 31 176-207 2-32 (168)
478 cd04129 Rho2 Rho2 subfamily. 92.0 2.2 4.7E-05 37.2 10.8 66 281-347 49-118 (187)
479 PF13401 AAA_22: AAA domain; P 92.0 0.15 3.3E-06 41.5 3.1 40 175-214 5-49 (131)
480 KOG3220 Similar to bacterial d 91.9 0.079 1.7E-06 47.1 1.4 33 173-212 1-33 (225)
481 COG1102 Cmk Cytidylate kinase 91.9 0.15 3.2E-06 43.9 3.0 23 175-198 2-24 (179)
482 PRK12299 obgE GTPase CgtA; Rev 91.9 1.8 3.9E-05 42.0 10.9 67 280-347 205-284 (335)
483 PF06414 Zeta_toxin: Zeta toxi 91.7 0.18 3.9E-06 44.9 3.6 43 173-217 14-56 (199)
484 PRK13973 thymidylate kinase; P 91.7 0.34 7.3E-06 43.7 5.4 35 174-209 4-38 (213)
485 KOG1423 Ras-like GTPase ERA [C 91.5 0.78 1.7E-05 43.5 7.5 31 175-212 74-104 (379)
486 PTZ00451 dephospho-CoA kinase; 91.5 0.25 5.4E-06 45.7 4.3 35 173-213 1-35 (244)
487 TIGR02034 CysN sulfate adenyly 91.4 0.33 7.1E-06 48.4 5.4 69 278-347 77-146 (406)
488 PRK14730 coaE dephospho-CoA ki 91.4 0.3 6.4E-06 43.5 4.6 34 174-213 2-35 (195)
489 PLN00043 elongation factor 1-a 91.4 0.38 8.1E-06 48.6 5.8 69 278-347 82-158 (447)
490 TIGR00073 hypB hydrogenase acc 91.2 0.45 9.9E-06 42.6 5.7 39 173-213 22-60 (207)
491 COG0572 Udk Uridine kinase [Nu 91.1 0.29 6.4E-06 44.2 4.3 38 174-214 9-46 (218)
492 PRK03839 putative kinase; Prov 91.1 0.25 5.3E-06 43.1 3.8 31 175-211 2-32 (180)
493 COG1072 CoaA Panthothenate kin 91.0 0.45 9.7E-06 44.5 5.5 40 173-213 82-123 (283)
494 TIGR01420 pilT_fam pilus retra 91.0 2.9 6.4E-05 40.6 11.5 35 175-210 124-159 (343)
495 COG1855 ATPase (PilT family) [ 91.0 0.24 5.3E-06 49.2 3.8 42 167-209 257-298 (604)
496 PRK13975 thymidylate kinase; P 90.9 0.28 6E-06 43.3 4.0 27 172-199 1-27 (196)
497 PRK04301 radA DNA repair and r 90.9 0.32 7E-06 46.7 4.7 38 175-212 103-146 (317)
498 PF02421 FeoB_N: Ferrous iron 90.9 0.79 1.7E-05 39.4 6.5 65 279-346 45-117 (156)
499 PLN02348 phosphoribulokinase 90.8 0.47 1E-05 46.8 5.7 40 173-213 49-103 (395)
500 PRK09302 circadian clock prote 90.7 0.4 8.7E-06 49.2 5.4 39 174-213 274-312 (509)
No 1
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=4.2e-46 Score=362.46 Aligned_cols=292 Identities=36% Similarity=0.576 Sum_probs=240.2
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeEEEee
Q 017486 74 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMS 153 (370)
Q Consensus 74 ~~~~~~v~~~L~~V~dPel~~div~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~V~l~ 153 (370)
+..+++|+++|++|.||+++.||+++|+|+++.+++ +++.+.+.++.++||..+.+.+++++++..++|++++.+++.
T Consensus 11 ~~~~~~v~~~l~~v~~p~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (369)
T PRK11670 11 EALRAMVAGTLANFQHPTLKHNLTTLKALHHVALLD--DTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLS 88 (369)
T ss_pred cchHHHHHHHHhcCCCCCCCCChhhhCCeeEEEEeC--CEEEEEEEECCCCchHHHHHHHHHHHHHHhcCCCceEEEEEe
Confidence 356799999999999999999999999999999987 789999999999999999999999999999999998888776
Q ss_pred cCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCC
Q 017486 154 AQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPE 233 (370)
Q Consensus 154 ~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~ 233 (370)
..... .....-...+.++.++|+|+|+||||||||+|+|||.+||+.|+||++||+|+++|+++.+||.+...... ..
T Consensus 89 ~~~~~-~~~~~~~~~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~-~~ 166 (369)
T PRK11670 89 HNIAT-LKRVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTS-PD 166 (369)
T ss_pred eehhh-hccccccccCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcc-cC
Confidence 53221 00001123467788999999999999999999999999999999999999999999999999864321111 12
Q ss_pred CCceeecccCCeeEEecCCC--CccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEE
Q 017486 234 KRTIIPTEYLGVKLVSFGFS--GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIV 311 (370)
Q Consensus 234 ~~~i~~~~~~~l~vl~~g~~--~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV 311 (370)
...+.+....++...+.+.. .....+|+++.....+.+++....|++||||||||||++++..++..++.++|.+++|
T Consensus 167 ~~~i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV 246 (369)
T PRK11670 167 GTHMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVV 246 (369)
T ss_pred CceeeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHHHHHhhhccCCeEEEE
Confidence 23344444444444433321 2234567888878888888765557899999999999999988877778888999999
Q ss_pred ecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC--CCccccccCCChHHHHHhHcC
Q 017486 312 TTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPFGRGSGSQVCTLSN 369 (370)
Q Consensus 312 ~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~--~~~~~~~~g~~~~~~~a~~~~ 369 (370)
++|+..++.++.+.++++.+.+++++|+|+||+++++ +++.++.||++..++++++|+
T Consensus 247 ~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~ 306 (369)
T PRK11670 247 TTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYH 306 (369)
T ss_pred ecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcC
Confidence 9999999999999999999999999999999999876 467778899999999999986
No 2
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.4e-39 Score=292.14 Aligned_cols=203 Identities=44% Similarity=0.687 Sum_probs=184.0
Q ss_pred cccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceee-cccCC
Q 017486 166 PEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLG 244 (370)
Q Consensus 166 ~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~-~~~~~ 244 (370)
..++.+..++|+|.|+||||||||+|+|||.+||+.|++|.++|+|+.+|+++.++|.+.+.... ....+.| ....+
T Consensus 40 ~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~--~~~g~~Pv~~~~~ 117 (300)
T KOG3022|consen 40 QENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQ--SDNGWIPVVVNKN 117 (300)
T ss_pred cccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceeee--cCCCceeeeecCC
Confidence 35678889999999999999999999999999999999999999999999999999998775322 2334445 55679
Q ss_pred eeEEecCCCC---ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCC-CeEEEEecCCcchHH
Q 017486 245 VKLVSFGFSG---QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPL-TAAVIVTTPQKLAFI 320 (370)
Q Consensus 245 l~vl~~g~~~---~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~-d~viiV~~p~~~s~~ 320 (370)
+.+++.|+.. ++..+|+++.....|++++....|++.||+|||||||++|.++++.+.+.- |++++||||+..++.
T Consensus 118 l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~ 197 (300)
T KOG3022|consen 118 LKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQ 197 (300)
T ss_pred eEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhH
Confidence 9999999864 346789999999999999999999999999999999999999998877765 889999999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEEEcCCccCC--CCccccccCCChHHHHHhHcCC
Q 017486 321 DVAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPFGRGSGSQVCTLSNY 370 (370)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~v~~~~--~~~~~~~~g~~~~~~~a~~~~~ 370 (370)
++++.++++++.+++++|+|.||+.+.| +++..+.|+.++|+++|+++|+
T Consensus 198 Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~gl 249 (300)
T KOG3022|consen 198 DVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGL 249 (300)
T ss_pred HHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCC
Confidence 9999999999999999999999999998 6999999999999999999975
No 3
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.8e-32 Score=253.40 Aligned_cols=190 Identities=43% Similarity=0.620 Sum_probs=155.2
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--ccccCC---CCCceeecccCCe
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEMNP---EKRTIIPTEYLGV 245 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~~~~~~---~~~~i~~~~~~~l 245 (370)
+..++|+|+|+|||+||||+|+|||.++|++|+||++||+|.++|+++.+|+.++. +..... ....+......++
T Consensus 55 ~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~l 134 (265)
T COG0489 55 GVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVL 134 (265)
T ss_pred ccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceE
Confidence 46789999999999999999999999999999999999999999999999998652 111111 1122222223456
Q ss_pred eEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHH
Q 017486 246 KLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (370)
Q Consensus 246 ~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~ 325 (370)
++++.+. ....|++++....+.+|+.+++|..|||||||+||++++..++..+... |++++|++|+.+...++++.
T Consensus 135 si~~~~~---~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~~-~g~viVt~p~~~~~~~v~ka 210 (265)
T COG0489 135 SILPLGP---VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRIP-DGVVIVTTPGKTALEDVKKA 210 (265)
T ss_pred EEEecCC---CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHhccC-CeEEEEeCCccchHHHHHHH
Confidence 6665554 6678999999999999999999988999999999999998888776554 79999999999999999999
Q ss_pred HHHHHcCCCCeEEEEEcCCccCCCCccccccCCChHHHHHhHcC
Q 017486 326 VRMFSKLKVPCIAVVENMCHFDADGKRYYPFGRGSGSQVCTLSN 369 (370)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~v~~~~~~~~~~~~g~~~~~~~a~~~~ 369 (370)
++++++.+.+++|+|+||.++.+.... +++++.++++|+
T Consensus 211 ~~~~~~~~~~vlGvv~Nm~~~~~~~~~-----~g~~~~~~~~~~ 249 (265)
T COG0489 211 IDMLEKAGIPVLGVVENMSYFICPRCG-----EGGGEKYAERYG 249 (265)
T ss_pred HHHHHhcCCceEEEEecCccCcccccC-----CCchhhHHHHhc
Confidence 999999999999999999999773221 555566666553
No 4
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.96 E-value=1.1e-27 Score=209.49 Aligned_cols=157 Identities=58% Similarity=0.959 Sum_probs=127.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~ 254 (370)
+|+|+|+|||+||||+|.|||.++|+.|+||++||+|+|+++++++.
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~--------------------------------- 47 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMW--------------------------------- 47 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHH---------------------------------
Confidence 58999999999999999999999999999999999999997765330
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCC
Q 017486 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (370)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~ 334 (370)
.++.....++.+++...++.|||||||+||+.++.......+..+|.+++|++|+..++.++.++++.+++.+.
T Consensus 48 ------~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~ 121 (169)
T cd02037 48 ------RGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI 121 (169)
T ss_pred ------hCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCC
Confidence 01112234555555544478999999999998876654432256799999999999999999999999999999
Q ss_pred CeEEEEEcCCccCC--CCccccccCCChHHHHHhHcCC
Q 017486 335 PCIAVVENMCHFDA--DGKRYYPFGRGSGSQVCTLSNY 370 (370)
Q Consensus 335 ~~~gvV~N~v~~~~--~~~~~~~~g~~~~~~~a~~~~~ 370 (370)
++.|+|+||++..+ +.++.+.|.+...+++++.+++
T Consensus 122 ~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 122 PILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGV 159 (169)
T ss_pred CeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCC
Confidence 99999999998754 4566677777788888888753
No 5
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.94 E-value=2.5e-26 Score=206.83 Aligned_cols=171 Identities=21% Similarity=0.300 Sum_probs=128.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc---cc----ccCCCCCceeecccCCe
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LL----EMNPEKRTIIPTEYLGV 245 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~---~~----~~~~~~~~i~~~~~~~l 245 (370)
+|+|+|+|+|||+||||++.|||.++|+.|+||++||+|++.+++..+++.... +. ......+.+.....+++
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~~~~~l 96 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDTNIENL 96 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccCCCCCE
Confidence 689999999999999999999999999999999999999999988877775441 11 11112233433445799
Q ss_pred eEEecCCCCcc-ccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHH
Q 017486 246 KLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 246 ~vl~~g~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (370)
+++|.+..... ...+..+. ++++++.++ ++|||||||+||......... ....+|.+++|++++..+..++.+
T Consensus 97 ~~l~~g~~~~~~~~~l~~~~----l~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~-~~~~~D~vilV~~~~~~~~~~~~~ 170 (204)
T TIGR01007 97 FVITSGPVPPNPTELLQSSN----FKTLIETLR-KYFDYIIIDTPPIGTVTDAAI-IARACDASILVTDAGEIKKRDVQK 170 (204)
T ss_pred EEEeCCCCCCCHHHHhCcHH----HHHHHHHHH-hcCCEEEEeCCCccccchHHH-HHHhCCeEEEEEECCCCCHHHHHH
Confidence 99998765322 22333333 444444443 789999999999432211111 122369999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCccCCC
Q 017486 325 GVRMFSKLKVPCIAVVENMCHFDAD 349 (370)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~v~~~~~ 349 (370)
.++.+++.+.+++|+|+||++....
T Consensus 171 ~~~~l~~~~~~~~gvVlN~~~~~~~ 195 (204)
T TIGR01007 171 AKEQLEQTGSNFLGVVLNKVDISVD 195 (204)
T ss_pred HHHHHHhCCCCEEEEEEeCcccccC
Confidence 9999999999999999999997654
No 6
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.94 E-value=6.5e-26 Score=209.99 Aligned_cols=166 Identities=28% Similarity=0.394 Sum_probs=126.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc---ccc----cCCCCCceeecccCCee
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---LLE----MNPEKRTIIPTEYLGVK 246 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~---~~~----~~~~~~~i~~~~~~~l~ 246 (370)
|+|+|+|+|||+||||+|+|||.+|++.|+||++||+|+++++++.+||.+.. +.. .....+.+.. ...|++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 79 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYE-GPFGVK 79 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEe-CCCCEE
Confidence 48999999999999999999999999999999999999998899998887532 111 1111222322 346899
Q ss_pred EEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHH
Q 017486 247 LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (370)
Q Consensus 247 vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (370)
++|.+.......... ...+.+++..+. +.||||||||||+.+...... +..+|.+++|++|+..++.++.+.+
T Consensus 80 ~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~VIiD~p~~~~~~~~~~--l~~ad~vliv~~~~~~s~~~~~~~~ 152 (251)
T TIGR01969 80 VIPAGVSLEGLRKAD----PDKLEDVLKEII-DDTDFLLIDAPAGLERDAVTA--LAAADELLLVVNPEISSITDALKTK 152 (251)
T ss_pred EEeCCCCHHHHhhcC----HHHHHHHHHHHH-hhCCEEEEeCCCccCHHHHHH--HHhCCeEEEEECCCCchHHHHHHHH
Confidence 999775432221111 223445554443 789999999999998655544 5567999999999999999998888
Q ss_pred HHHHcCCCCeEEEEEcCCccC
Q 017486 327 RMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 327 ~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+++.+.+++++|+|+++..
T Consensus 153 ~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 153 IVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred HHHHhcCCceEEEEEECCCch
Confidence 888888888999999998763
No 7
>CHL00175 minD septum-site determining protein; Validated
Probab=99.94 E-value=1e-25 Score=212.77 Aligned_cols=172 Identities=26% Similarity=0.374 Sum_probs=132.1
Q ss_pred ccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--------ccccCCCCCceee-
Q 017486 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--------LLEMNPEKRTIIP- 239 (370)
Q Consensus 169 ~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--------~~~~~~~~~~i~~- 239 (370)
.++++++|+|+|+|||+||||+|+|||.+|++.|+||++||+|++.++++.+||.+.. +.......+.+..
T Consensus 11 ~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~ 90 (281)
T CHL00175 11 SATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRD 90 (281)
T ss_pred cCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeec
Confidence 4567899999999999999999999999999999999999999998899999886532 1111112233333
Q ss_pred cccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchH
Q 017486 240 TEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 240 ~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~ 319 (370)
..+++++++|.+...... .+.. ..+.++++.+++..||||||||||+.+...... +..+|.+++|++|+..++
T Consensus 91 ~~~~~l~~l~~~~~~~~~-~~~~----~~l~~~l~~l~~~~yD~VIiDtpp~~~~~~~~~--l~~aD~viiV~~p~~~si 163 (281)
T CHL00175 91 KRWKNLSLLAISKNRQRY-NVTR----KNMNMLVDSLKNRGYDYILIDCPAGIDVGFINA--IAPAQEAIVVTTPEITAI 163 (281)
T ss_pred CCCCCeEEEeCCCchhhc-cCCH----HHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHH--HHhcCeeEEEcCCChHHH
Confidence 345799999987543221 1222 235555555542389999999999987544433 456799999999999999
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 320 IDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.++.++++.+++.+....++|+|++.++
T Consensus 164 ~~~~~~~~~l~~~~~~~~~lvvN~~~~~ 191 (281)
T CHL00175 164 RDADRVAGLLEANGIYNVKLLVNRVRPD 191 (281)
T ss_pred HHHHHHHHHHHHcCCCceEEEEeccChh
Confidence 9999999999998887889999999864
No 8
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.94 E-value=1.1e-25 Score=211.78 Aligned_cols=165 Identities=19% Similarity=0.280 Sum_probs=126.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--c---cccCCCCCceee-cccCCe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMNPEKRTIIP-TEYLGV 245 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~---~~~~~~~~~i~~-~~~~~l 245 (370)
..++|+|+|+|||+||||+|.|||.++|+.|+||++||+|+++|.++.+|+.+.. + .......+.+.. ...+|+
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~~~~~gl~~~l~~~~~~~~i~~~~~~~~l 181 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENL 181 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCCCCCCCHHHHhCCCCCHHHeeecCCCCCE
Confidence 4579999999999999999999999999999999999999999998888876532 1 111112223332 234799
Q ss_pred eEEecCCCCcc-ccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHH
Q 017486 246 KLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 246 ~vl~~g~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (370)
+++|+|..... ...+..+.+ .++++.++ +.||||||||||..... ...+ ...+|.+++|++++.++..++.
T Consensus 182 ~~lp~g~~~~~~~~~~~~~~~----~~~l~~l~-~~yD~ViiD~pp~~~~~d~~~~--~~~~d~vilV~~~~~t~~~~~~ 254 (274)
T TIGR03029 182 SVLPAGAIPPNPQELLARPAF----TDLLNKVM-GDYDVVIVDTPSAEHSSDAQIV--ATRARGTLIVSRVNETRLHELT 254 (274)
T ss_pred EEEeCcCCCCCHHHHhCcHHH----HHHHHHHH-hcCCEEEEeCCCcccccHHHHH--HHhCCeEEEEEECCCCCHHHHH
Confidence 99999875432 234444444 44444443 78999999999976422 2222 2346999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcC
Q 017486 324 KGVRMFSKLKVPCIAVVENM 343 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~ 343 (370)
+.++.+++.+.+++|+|+|+
T Consensus 255 ~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 255 SLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred HHHHHHHhCCCCEEEEEeCC
Confidence 99999999999999999996
No 9
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.93 E-value=1.7e-25 Score=207.29 Aligned_cols=169 Identities=30% Similarity=0.350 Sum_probs=136.7
Q ss_pred CCeEEEEEeCCCCChHHHHHHHH-HHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc-------ccccCCCCCceeecccC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNL-AYTLAGMGARVGIFDADVYGPSLPTMVSPENR-------LLEMNPEKRTIIPTEYL 243 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nL-A~~LA~~G~rVllID~D~~~~sl~~~l~~~~~-------~~~~~~~~~~i~~~~~~ 243 (370)
++++|+|+|+|||+||||+++|| |..++..|++|++||+|+..++++.+||.... +.+.....+.+......
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcC
Confidence 46899999999999999999999 55555678888999999999999999998763 22222334445555558
Q ss_pred CeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHH
Q 017486 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 244 ~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (370)
|++++|.+........+........++++. ..|||||||||+|++...+.. ...+|.+++|++|+..++.++.
T Consensus 81 gl~vipg~~~~~~~~~~~~~~~~~~~~~l~-----~~~D~iliD~~aGl~~~~~~~--~~~sd~~viVt~pe~~si~~A~ 153 (262)
T COG0455 81 GLYVLPGGSGLEDLAKLDPEDLEDVIKELE-----ELYDYILIDTGAGLSRDTLSF--ILSSDELVIVTTPEPTSITDAY 153 (262)
T ss_pred CEEEeeCCCChHHHhhcCHHHHHHHHHHHH-----hcCCEEEEeCCCCccHHHHHH--HHhcCcEEEEeCCCcchHHHHH
Confidence 999999887766655555555566666663 678999999999998776655 4556999999999999999999
Q ss_pred HHHHHHHcCCCCeEE--EEEcCCccC
Q 017486 324 KGVRMFSKLKVPCIA--VVENMCHFD 347 (370)
Q Consensus 324 ~~~~~l~~~~~~~~g--vV~N~v~~~ 347 (370)
.+++.+.+.+.+..+ +|+||+...
T Consensus 154 ~~i~~~~~~~~~~~~~~vV~N~v~~~ 179 (262)
T COG0455 154 KTIKILSKLGLDLLGRRVVLNRVRST 179 (262)
T ss_pred HHHHHHHHcCCccccceEEEEecccc
Confidence 999999999999888 999999743
No 10
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.93 E-value=3e-25 Score=200.40 Aligned_cols=162 Identities=25% Similarity=0.294 Sum_probs=122.6
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCCCCCCcCCCCccc--c----cccC-CCCCceeecccC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--L----LEMN-PEKRTIIPTEYL 243 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~~~sl~~~l~~~~~--~----~~~~-~~~~~i~~~~~~ 243 (370)
.+++|+|+|+|||+||||+++|||.+||+ .|+||++||+|+++++++.+++.+.. + .... ...+.+.....+
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~~i~~~~~~ 113 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIG 113 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCCCCCCHHHHHcCCCCCHHHHhccCCCC
Confidence 46899999999999999999999999997 69999999999999999888876543 1 1111 122333444457
Q ss_pred CeeEEecCCCCccc-cccCCchHHHHHHHHHHhcCCCCC--cEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchH
Q 017486 244 GVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGEL--DYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 244 ~l~vl~~g~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~y--D~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~ 319 (370)
+++++|.|...... ...... .+.++++.++ .+| ||||||+||+.+... ..+ ...+|.+++|++++..+.
T Consensus 114 ~l~vl~~g~~~~~~~~~~~~~----~l~~~l~~l~-~~y~~D~IiiD~pp~~~~~~~~~l--~~~aD~viiV~~~~~~~~ 186 (207)
T TIGR03018 114 RLSLLPAGRRHPNPTELLASQ----RMRSLLHELA-RRYPDRIIIIDTPPLLVFSEARAL--ARLVGQIVLVVEEGRTTQ 186 (207)
T ss_pred CEEEEeCCCCCCCHHHHhCcH----HHHHHHHHHH-hhCCCCEEEEECCCCcchhHHHHH--HHhCCEEEEEEECCCCCH
Confidence 99999988764332 222333 3444444444 556 999999999886422 222 334699999999999999
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEc
Q 017486 320 IDVAKGVRMFSKLKVPCIAVVEN 342 (370)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N 342 (370)
..+.+.++.++ +.+++|+|+|
T Consensus 187 ~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 187 EAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred HHHHHHHHHhc--CCCeEEEEeC
Confidence 99999999998 7889999998
No 11
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.93 E-value=3.5e-25 Score=208.29 Aligned_cols=170 Identities=21% Similarity=0.167 Sum_probs=118.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc--cccc--------cCCCCCceeeccc
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLE--------MNPEKRTIIPTEY 242 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~--~~~~--------~~~~~~~i~~~~~ 242 (370)
||+|+|+ +||||||||+++|||.+||++|+||++||+|+|+++...++|... .+.+ .....+.+.+. .
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~-~ 78 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPG-F 78 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeC-C
Confidence 3799999 999999999999999999999999999999999998888776321 1110 01112233343 5
Q ss_pred CCeeEEecCCCCccc-cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHH
Q 017486 243 LGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFI 320 (370)
Q Consensus 243 ~~l~vl~~g~~~~~~-~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~ 320 (370)
.|++++|.+...... ..+++......+.+.+..+ +++|||||||||++.... ......+.++|.+++|++|+..++.
T Consensus 79 ~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~ 157 (273)
T PRK13232 79 GDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIY 157 (273)
T ss_pred CCeEEEeCCCCCCCCCCCCCchhHHHHHHHHcccc-cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHH
Confidence 799999976532211 1122222222355555544 478999999998765311 1111112367999999999999999
Q ss_pred HHHHHHHHHHc---CCCCeEEEEEcCCc
Q 017486 321 DVAKGVRMFSK---LKVPCIAVVENMCH 345 (370)
Q Consensus 321 ~~~~~~~~l~~---~~~~~~gvV~N~v~ 345 (370)
++.++++.++. .+.++.|+|+||.+
T Consensus 158 ~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 158 AANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred HHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 98888777775 36778899999864
No 12
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.93 E-value=1.1e-24 Score=197.41 Aligned_cols=169 Identities=23% Similarity=0.210 Sum_probs=116.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--cc---------ccCCCCCceeeccc
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL---------EMNPEKRTIIPTEY 242 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~~---------~~~~~~~~i~~~~~ 242 (370)
++|+|+ +||||||||+++|||.+||+.|+|||+||+|+|.++...+++.... +. ......+ +.....
T Consensus 1 ~~iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (212)
T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELED-VIFEGF 78 (212)
T ss_pred CEEEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhH-eeEeCC
Confidence 479999 5999999999999999999999999999999998776666553321 11 1111222 334456
Q ss_pred CCeeEEecCCCCccccc-cCCch-HHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHh--CCCeEEEEecCCcch
Q 017486 243 LGVKLVSFGFSGQGRAI-MRGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVV--PLTAAVIVTTPQKLA 318 (370)
Q Consensus 243 ~~l~vl~~g~~~~~~~~-~~~~~-~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~--~~d~viiV~~p~~~s 318 (370)
+|++++|++........ ..... ....++ .+..+ +++||||||||++......+. ..+. .+|.+++|++|+..+
T Consensus 79 ~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~-~l~~~-~~~yD~ilID~~g~~~~~~~~-~~l~~~~ad~vliv~~p~~~s 155 (212)
T cd02117 79 GGVKCVESGGPEPGVGCAGRGVITAVNLLE-KEGFA-EDDLDVVLYDVLGDVVCGGFA-MPIREGKADEIYIVTSGEFMA 155 (212)
T ss_pred CCcEEEeCCCCCCCcccCCcchhhHHHHHH-hcccc-ccCCCEEEEecCCCceecccc-cccccccCcEEEEEecccHHH
Confidence 89999998865433221 11110 112233 34333 378999999997654311111 1123 579999999999999
Q ss_pred HHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 319 FIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 319 ~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
+.++.++++.++.. +.++.|+|+||++.+
T Consensus 156 l~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 156 LYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred HHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 99998888777764 667899999999864
No 13
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.93 E-value=8.3e-26 Score=197.90 Aligned_cols=170 Identities=24% Similarity=0.309 Sum_probs=133.1
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccc--------cccCCCCCcee-eccc
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTII-PTEY 242 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~--------~~~~~~~~~i~-~~~~ 242 (370)
|.++|.|||+||||||||+++||+.+||+.|+||++||+|..--++...+|.++++ .......++++ ....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~ 80 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL 80 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence 56899999999999999999999999999999999999999988999999998762 12222233333 3456
Q ss_pred CCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHH
Q 017486 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (370)
Q Consensus 243 ~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~ 322 (370)
+++.++|+....+.. .+..+.+...++++. ..+|||||+|+|+|........ +..+|.+++|++|+..++++.
T Consensus 81 ~nL~lLPAsQtrdKd-alt~E~v~~vv~eL~----~~~fDyIi~DsPAGIE~G~~~A--~~~Ad~AiVVtnPEvSsVRDs 153 (272)
T COG2894 81 ENLFLLPASQTRDKD-ALTPEGVKKVVNELK----AMDFDYIIIDSPAGIEQGFKNA--VYFADEAIVVTNPEVSSVRDS 153 (272)
T ss_pred CceEecccccccCcc-cCCHHHHHHHHHHHH----hcCCCEEEecCcchHHHHHHhh--hhccceEEEEcCCCccccccc
Confidence 899999987654433 344455556666664 3689999999999987554433 667899999999999999999
Q ss_pred HHHHHHHHcCC----CC---eEEEEEcCCccCC
Q 017486 323 AKGVRMFSKLK----VP---CIAVVENMCHFDA 348 (370)
Q Consensus 323 ~~~~~~l~~~~----~~---~~gvV~N~v~~~~ 348 (370)
.|.+..|+..+ .. ...+++||.++..
T Consensus 154 DRiiGlLesk~~rae~~~~~~~~llvnR~~p~~ 186 (272)
T COG2894 154 DRIIGLLESKSRRAEIGEEPKEHLLLNRYRPEM 186 (272)
T ss_pred hhheeehhcccchhhcCCcccceEEEEccCHHH
Confidence 99999997544 22 3678999988754
No 14
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.92 E-value=5.7e-25 Score=203.30 Aligned_cols=171 Identities=20% Similarity=0.255 Sum_probs=119.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccccc----c----cCCCCCceeecccCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL----E----MNPEKRTIIPTEYLG 244 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~----~----~~~~~~~i~~~~~~~ 244 (370)
+++|+|+|+|||+||||+|+|||.+||++|+||++||+|+|+ +++..+|.+.... . .....+.+.. ...+
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 78 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLNGEPWAAAAYR-SSDG 78 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc-hHHHHhCCCCccCCcHHHHHhcCCChHHhHhh-cCCC
Confidence 469999999999999999999999999999999999999986 4666666543211 0 0111112222 3468
Q ss_pred eeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHH-
Q 017486 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA- 323 (370)
Q Consensus 245 l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~- 323 (370)
++++|.+.................++++++.+.+..||||||||||+.+.....+ +..+|.+++|+.|+..++..+.
T Consensus 79 l~~ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~~~~~--l~~ad~vii~~~~~~~s~~~~~~ 156 (246)
T TIGR03371 79 VLFLPFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPITRQA--LAAADLVLVVVNADAACYATLHQ 156 (246)
T ss_pred eEEecCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHHHHHH--HHhCCeEEEEeCCCHHHHHHHHH
Confidence 9999976543221111111123456677776654457999999999988655544 5677999999999999999988
Q ss_pred HHHHHHHcCCCC-eEEEEEcCCccC
Q 017486 324 KGVRMFSKLKVP-CIAVVENMCHFD 347 (370)
Q Consensus 324 ~~~~~l~~~~~~-~~gvV~N~v~~~ 347 (370)
.+.+.++..+.+ .+++|+|+++..
T Consensus 157 ~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 157 QALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred HHHHHhhcccccccceEEeeccCcc
Confidence 445555533322 378999998764
No 15
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.92 E-value=1e-24 Score=230.17 Aligned_cols=171 Identities=17% Similarity=0.169 Sum_probs=132.4
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc------ccccCCCCCceeecccCCe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~------~~~~~~~~~~i~~~~~~~l 245 (370)
..++|+|+|.+||+||||+|.|||.++|+.|+||++||+|+++|.++.+|+.... +.+.....+.+.+...+|+
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 609 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 609 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCCE
Confidence 4589999999999999999999999999999999999999999999888876532 1122222345555556799
Q ss_pred eEEecCCCC-ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHH
Q 017486 246 KLVSFGFSG-QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 246 ~vl~~g~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (370)
+++|.|... .+..++..+ .+.++++.++ .+||||||||||.......... ...+|.+++|+.++.++..++.+
T Consensus 610 ~vl~~g~~~~~p~ell~~~----~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~l-a~~ad~~llVvr~~~t~~~~~~~ 683 (726)
T PRK09841 610 DVITRGQVPPNPSELLMRD----RMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAVV-GRSVGTSLLVARFGLNTAKEVSL 683 (726)
T ss_pred EEEeCCCCCCCHHHHhCcH----HHHHHHHHHH-hcCCEEEEeCCCccccchHHHH-HHhCCeEEEEEeCCCCCHHHHHH
Confidence 999988653 233344444 4455555544 7899999999997653222221 22459999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCccCC
Q 017486 325 GVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.++.+.+.+.+++|+|+|+++...
T Consensus 684 ~~~~l~~~~~~~~G~VlN~~~~~~ 707 (726)
T PRK09841 684 SMQRLEQAGVNIKGAILNGVIKRA 707 (726)
T ss_pred HHHHHHhCCCceEEEEEeCcccCc
Confidence 999999999999999999998654
No 16
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.92 E-value=2.1e-24 Score=200.95 Aligned_cols=167 Identities=25% Similarity=0.391 Sum_probs=125.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccc----cc----cCCCCCceee-cccC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL----LE----MNPEKRTIIP-TEYL 243 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~----~~----~~~~~~~i~~-~~~~ 243 (370)
+|+|+|+|+|||+||||+|+|||.+|++.|+||++||+|++.++++.+||.+... .+ .....+.+.. ...+
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLK 80 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCC
Confidence 3799999999999999999999999999999999999999988998888865321 00 0111112222 1346
Q ss_pred CeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHH
Q 017486 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 244 ~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (370)
+++++|.+..... ...... .+.++++.++ +.|||||||+||+.+...... +..+|.+++|++|+..++..+.
T Consensus 81 ~l~~l~~~~~~~~-~~~~~~----~l~~~l~~l~-~~~D~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (261)
T TIGR01968 81 NLYLLPASQTRDK-DAVTPE----QMKKLVNELK-EEFDYVIIDCPAGIESGFRNA--VAPADEAIVVTTPEVSAVRDAD 152 (261)
T ss_pred CeEEEeCCCchhh-hhCCHH----HHHHHHHHHH-HhCCEEEEeCCCCcCHHHHHH--HHhCCeEEEEcCCCcHHHHHHH
Confidence 8999997754221 112222 3444554444 689999999999987654433 5677999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccC
Q 017486 324 KGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
++++.+++.+....++|+|++.+.
T Consensus 153 ~~~~~l~~~~~~~~~iviN~~~~~ 176 (261)
T TIGR01968 153 RVIGLLEAKGIEKIHLIVNRLRPE 176 (261)
T ss_pred HHHHHHHHcCCCceEEEEeCcCch
Confidence 999999988876789999998764
No 17
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.92 E-value=8e-25 Score=216.02 Aligned_cols=173 Identities=26% Similarity=0.292 Sum_probs=125.9
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccc--------c-------ccCCCCCc
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------L-------EMNPEKRT 236 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~--------~-------~~~~~~~~ 236 (370)
.+++|+|+|.||||||||+|+|||.+||+.|+|||+||+|+|+ +++.+||..... . ......+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~ 198 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDV 198 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCHHHh
Confidence 4689999999999999999999999999999999999999985 677777753211 0 01122334
Q ss_pred eeecccCCeeEEecCCCCccccc----------cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCC
Q 017486 237 IIPTEYLGVKLVSFGFSGQGRAI----------MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLT 306 (370)
Q Consensus 237 i~~~~~~~l~vl~~g~~~~~~~~----------~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d 306 (370)
+.++.++|++++|++........ .....+...+++.++.+. +.||||||||||+++.. +...+.++|
T Consensus 199 i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~~~--t~~al~aAd 275 (405)
T PRK13869 199 IRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLGFL--TLSGLCAAT 275 (405)
T ss_pred eeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchhHH--HHHHHHHcC
Confidence 55667789999997643211110 011112245666776665 78999999999999854 444577889
Q ss_pred eEEEEecCCcchHHHHHHHHHHH-------HcC--C--CCeEEEEEcCCccCC
Q 017486 307 AAVIVTTPQKLAFIDVAKGVRMF-------SKL--K--VPCIAVVENMCHFDA 348 (370)
Q Consensus 307 ~viiV~~p~~~s~~~~~~~~~~l-------~~~--~--~~~~gvV~N~v~~~~ 348 (370)
.+|+++.|+..++..+.++++++ ++. + ...+|+|+||++.+.
T Consensus 276 ~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~ 328 (405)
T PRK13869 276 SMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQD 328 (405)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCC
Confidence 99999999999999888887632 222 2 346899999998653
No 18
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.92 E-value=2.5e-24 Score=202.10 Aligned_cols=169 Identities=19% Similarity=0.267 Sum_probs=124.6
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc----cc----ccCCCCCceeec-cc
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----LL----EMNPEKRTIIPT-EY 242 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~----~~----~~~~~~~~i~~~-~~ 242 (370)
|+++|+|+|+|||+||||+|+|||.+|+++|+||++||+|++.++++.+||.+.. +. ......+.+... ..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence 5689999999999999999999999999999999999999998899998886532 11 111112223222 35
Q ss_pred CCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHH
Q 017486 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (370)
Q Consensus 243 ~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~ 322 (370)
.|++++|.+.... ...+. ...+.++++.+++..|||||||+||+.+...... +..+|.+++|++|+..++..+
T Consensus 81 ~~~~~lp~~~~~~-~~~~~----~~~~~~~l~~l~~~~yd~viiD~p~~~~~~~~~~--l~~ad~vivv~~p~~~sl~~~ 153 (270)
T PRK10818 81 ENLYILPASQTRD-KDALT----REGVAKVLDDLKAMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRDS 153 (270)
T ss_pred CCEEEecCCCCcc-hhhhC----HHHHHHHHHHHhhcCCCEEEEeCCCCccHHHHHH--HHhCCeEEEEcCCCchHHHhH
Confidence 7899999875432 11122 1234455555543579999999999998665544 667899999999999999999
Q ss_pred HHHHHHHHcC-----C--CCe-EEEEEcCCccC
Q 017486 323 AKGVRMFSKL-----K--VPC-IAVVENMCHFD 347 (370)
Q Consensus 323 ~~~~~~l~~~-----~--~~~-~gvV~N~v~~~ 347 (370)
.++++.+... + .++ .++|+|+++..
T Consensus 154 ~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 154 DRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred HHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 9999998632 1 122 58999998864
No 19
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.92 E-value=1.1e-24 Score=231.85 Aligned_cols=174 Identities=15% Similarity=0.136 Sum_probs=134.5
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc------ccccCCCCCceeecccCC
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLG 244 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~------~~~~~~~~~~i~~~~~~~ 244 (370)
...++|+|+|.|||+||||+|+|||..||+.|+||++||+|+++|+++.+|+.... +.+.......+.....+|
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 35689999999999999999999999999999999999999999999988886532 111122233444555689
Q ss_pred eeEEecCCCC-ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHH
Q 017486 245 VKLVSFGFSG-QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 245 l~vl~~g~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (370)
++++|+|... .....+.++.+...++++ + +.||||||||||..+....... ...+|.+++|+.++.++...+.
T Consensus 624 l~~l~~g~~~~~~~~ll~~~~~~~~l~~l----~-~~yD~IiID~pp~~~~~d~~~l-~~~~D~vl~v~~~~~~~~~~~~ 697 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASPAMFSLVIHA----R-LYSDCVVVDVGTADPVRDMRAA-ARLAIIMLLVTAYDRVVVECGR 697 (754)
T ss_pred eeEecCCCCCCCHHHHhccHHHHHHHHHH----H-hhCCEEEEcCCCcchhHHHHHh-hhhCCeEEEEEEeCceeHHHHH
Confidence 9999998643 223344454444444444 3 7899999999998764333221 2246999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccCCCC
Q 017486 324 KGVRMFSKLKVPCIAVVENMCHFDADG 350 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~v~~~~~~ 350 (370)
+.++.+++.+.+++|+|+|+++.+..+
T Consensus 698 ~~~~~l~~~~~~~~GvvlN~~~~~~~~ 724 (754)
T TIGR01005 698 ADAQGISRLNGEVTGVFLNMLDPNDEV 724 (754)
T ss_pred HHHHHHHhcCCceEEEEecCCChhhhc
Confidence 999999999999999999999876543
No 20
>PRK11519 tyrosine kinase; Provisional
Probab=99.92 E-value=3.2e-24 Score=226.24 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=133.0
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc------ccccCCCCCceeecccCCe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~------~~~~~~~~~~i~~~~~~~l 245 (370)
..++|+|+|.+||+||||++.|||..+|+.|+||++||+|+++|+++.+|+.... +.+.....+.+.+...+|+
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 4589999999999999999999999999999999999999999999988876543 1222223345556666899
Q ss_pred eEEecCCCCc-cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHH
Q 017486 246 KLVSFGFSGQ-GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 246 ~vl~~g~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (370)
+++|.|.... ...++.+ ..+.++++.++ .+||||||||||...... ..+ ...+|.+++|+.++.+....+.
T Consensus 605 ~~lp~g~~~~~~~ell~s----~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da~~l--~~~~d~~l~Vvr~~~t~~~~~~ 677 (719)
T PRK11519 605 DLIPRGQVPPNPSELLMS----ERFAELVNWAS-KNYDLVLIDTPPILAVTDAAIV--GRHVGTTLMVARYAVNTLKEVE 677 (719)
T ss_pred EEEeCCCCCCCHHHHhhH----HHHHHHHHHHH-hcCCEEEEeCCCcccchHHHHH--HHHCCeEEEEEeCCCCCHHHHH
Confidence 9999886533 2234433 34555555554 789999999999664221 222 2335999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..++.+++.+.+++|+|+|+++...
T Consensus 678 ~~~~~l~~~~~~~~G~VlN~v~~~~ 702 (719)
T PRK11519 678 TSLSRFEQNGIPVKGVILNSIFRRA 702 (719)
T ss_pred HHHHHHHhCCCCeEEEEEeCCccCc
Confidence 9999999999999999999996544
No 21
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.91 E-value=6.1e-24 Score=201.92 Aligned_cols=170 Identities=23% Similarity=0.192 Sum_probs=117.7
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--cccc---------CCCCCceeec
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---------NPEKRTIIPT 240 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~~~~---------~~~~~~i~~~ 240 (370)
.+++|+| +|||||||||+|+|||.+||++|+||++||+|++.++...+++.... +... ....+.+ ..
T Consensus 5 ~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i-~~ 82 (296)
T PRK13236 5 NIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVM-LT 82 (296)
T ss_pred CceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhh-ee
Confidence 3589999 78999999999999999999999999999999999999888875432 1111 1122233 34
Q ss_pred ccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-HHhhHhCCCeEEEEecCCcchH
Q 017486 241 EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 241 ~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l-~~~~~~~~d~viiV~~p~~~s~ 319 (370)
...|++++|++...... ...+......++.+.....|++||||+|||++......+ ....+.++|.+++|++|+..++
T Consensus 83 ~~~gv~llpa~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~~sl 161 (296)
T PRK13236 83 GFRGVKCVESGGPEPGV-GCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAM 161 (296)
T ss_pred CCCCeEEEECCCCCCCC-CCcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEecCcchHHH
Confidence 55799999987433221 122222222355555444568999999999754321111 1111347799999999999999
Q ss_pred HHHHHHHH----HHHcCCCCeEEEEEcCC
Q 017486 320 IDVAKGVR----MFSKLKVPCIAVVENMC 344 (370)
Q Consensus 320 ~~~~~~~~----~l~~~~~~~~gvV~N~v 344 (370)
.++.++++ .....+.++.|+|+||.
T Consensus 162 ~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~ 190 (296)
T PRK13236 162 YAANNIARGILKYAHTGGVRLGGLICNSR 190 (296)
T ss_pred HHHHHHHHHHHHHhhCCCceeEEEEecCC
Confidence 88875544 33344678899999985
No 22
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.91 E-value=7.5e-24 Score=199.42 Aligned_cols=171 Identities=18% Similarity=0.192 Sum_probs=114.9
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCCCCCCcCCCCccc--ccc---c----CCCCCceeecc
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR--LLE---M----NPEKRTIIPTE 241 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~~~sl~~~l~~~~~--~~~---~----~~~~~~i~~~~ 241 (370)
|+++|+|+ +||||||||+|+|||.+||+ .|+|||+||+|+|+++...++|.... +.+ . ....+.+....
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 56899999 89999999999999999997 59999999999999766655654321 111 0 01122344555
Q ss_pred cCCeeEEecCCCCcccc-ccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhH--hCCCeEEEEecCCcch
Q 017486 242 YLGVKLVSFGFSGQGRA-IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV--VPLTAAVIVTTPQKLA 318 (370)
Q Consensus 242 ~~~l~vl~~g~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~--~~~d~viiV~~p~~~s 318 (370)
.+|++++|++....... ..+.......+.+.++.+. ++||||||||++......+.. .+ .++|.+++|++|+..+
T Consensus 80 ~~~l~~ipa~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~~~~al~~-~~~~~aad~viIp~~p~~~s 157 (275)
T PRK13233 80 FKDIRCVESGGPEPGVGCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDVVCGGFAM-PIRDGKAQEVYIVASGEMMA 157 (275)
T ss_pred CCCcEEEECCCCCCCCCCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCceeeccccc-cchhccCceEEEeccccHHH
Confidence 68999999875432111 0111111112444444443 789999999965332111110 00 1579999999999999
Q ss_pred HHHHHHHHHHH----HcCCCCeEEEEEcCCc
Q 017486 319 FIDVAKGVRMF----SKLKVPCIAVVENMCH 345 (370)
Q Consensus 319 ~~~~~~~~~~l----~~~~~~~~gvV~N~v~ 345 (370)
+.++.++++.+ ++.+++++|+|+|+..
T Consensus 158 l~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~ 188 (275)
T PRK13233 158 IYAANNICKGLVKYAEQSGVRLGGIICNSRN 188 (275)
T ss_pred HHHHHHHHHHHHHHHhcCCCceeEEEeeCCC
Confidence 99999887666 3457889999999754
No 23
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.91 E-value=1.7e-23 Score=196.85 Aligned_cols=172 Identities=23% Similarity=0.180 Sum_probs=111.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--c---ccc---CCCCCceeecccCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEM---NPEKRTIIPTEYLG 244 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~---~~~---~~~~~~i~~~~~~~ 244 (370)
||+|+|+ +||||||||+|+|||.+||++|+|||+||+|+|.++...+++.... + ... ....+.+.....+|
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYGG 79 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCCC
Confidence 3799999 7999999999999999999999999999999999877666543211 1 110 11112234445679
Q ss_pred eeEEecCCCCccccc-cCCchHH-HHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-HHhhHhCCCeEEEEecCCcchHHH
Q 017486 245 VKLVSFGFSGQGRAI-MRGPMVS-GVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFID 321 (370)
Q Consensus 245 l~vl~~g~~~~~~~~-~~~~~~~-~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l-~~~~~~~~d~viiV~~p~~~s~~~ 321 (370)
++++|.+........ ....... ..++++...-..++||||||||++......+ ....+.++|.+++|++|+..++.+
T Consensus 80 l~~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~sl~g 159 (274)
T PRK13235 80 TRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAMYA 159 (274)
T ss_pred CEEEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhHHHH
Confidence 999987632221000 0011111 2233321100026799999999765432111 111123679999999999999999
Q ss_pred HHHHHHHHHc----CCCCeEEEEEcCCc
Q 017486 322 VAKGVRMFSK----LKVPCIAVVENMCH 345 (370)
Q Consensus 322 ~~~~~~~l~~----~~~~~~gvV~N~v~ 345 (370)
+.++++.+++ .+.++.|+|+|+..
T Consensus 160 ~~~ll~~i~~~~~~~~l~i~giv~n~~~ 187 (274)
T PRK13235 160 ANNICKGILKYADAGGVRLGGLICNSRK 187 (274)
T ss_pred HHHHHHHHHHHhhcCCCceeEEEEecCC
Confidence 9888876653 35667899999753
No 24
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.91 E-value=3.1e-23 Score=194.64 Aligned_cols=168 Identities=20% Similarity=0.175 Sum_probs=113.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCc--ccc---c-------ccCCCCCceee
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRL---L-------EMNPEKRTIIP 239 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~--~~~---~-------~~~~~~~~i~~ 239 (370)
|+++|+|. +||||||||+++|||.+||++|+|||+||+|+|++ +...++.. ..+ . ......+.+.
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~-~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~- 77 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHD-STFTLTGKLVPTVIDILEEVDFHSEELRPEDFVY- 77 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcc-hhhhhcCCCCCcHHHHHHhccccccCCCHHHhee-
Confidence 56899998 79999999999999999999999999999999874 44444321 111 0 0111122333
Q ss_pred cccCCeeEEecCCCCccccc--cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc
Q 017486 240 TEYLGVKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 317 (370)
Q Consensus 240 ~~~~~l~vl~~g~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~ 317 (370)
...+|++++|++........ .........++++ .+ +++|||||||||++.....+ ...+..+|.+++|++|+..
T Consensus 78 ~~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~viIDt~g~~~~~~~-~~~l~~AD~viip~~~~~~ 153 (270)
T PRK13185 78 EGYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEH--HL-LDDYDVILFDVLGDVVCGGF-AAPLQYADYALIVTANDFD 153 (270)
T ss_pred eCCCCcEEEECCCCCCCCCccchhHHHHHHHHHhc--Cc-cccCCEEEEecCCCcccCcc-cchhhhCcEEEEEecCchh
Confidence 34579999998764322111 1111111223321 12 36899999999876543221 1224567999999999999
Q ss_pred hHHHHHHHHHHHH----cCCCCeEEEEEcCCcc
Q 017486 318 AFIDVAKGVRMFS----KLKVPCIAVVENMCHF 346 (370)
Q Consensus 318 s~~~~~~~~~~l~----~~~~~~~gvV~N~v~~ 346 (370)
++..+.++++.++ +.++++.|+|+||++.
T Consensus 154 sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~ 186 (270)
T PRK13185 154 SIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG 186 (270)
T ss_pred hHHHHHHHHHHHHhhhhccCCCceEEEEeccCh
Confidence 9999998888775 3466778999999764
No 25
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.90 E-value=1.2e-23 Score=206.12 Aligned_cols=172 Identities=22% Similarity=0.254 Sum_probs=122.9
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC-CCCCCCCCcCCCCccccc------------c-cCCCCCce
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRLL------------E-MNPEKRTI 237 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~-D~~~~sl~~~l~~~~~~~------------~-~~~~~~~i 237 (370)
.+++|+|+|.||||||||+|+|||.+||.+|+|||+||+ |+|+ +++.+||...... . .......+
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~-nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~i 183 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQG-TASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAI 183 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCC-CcccccCcCccccccccccHHHHHhCCCcchHhhe
Confidence 468999999999999999999999999999999999996 9987 5666776532210 0 01123445
Q ss_pred eecccCCeeEEecCCCCcccc--c---c-CC---chHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeE
Q 017486 238 IPTEYLGVKLVSFGFSGQGRA--I---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAA 308 (370)
Q Consensus 238 ~~~~~~~l~vl~~g~~~~~~~--~---~-~~---~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~v 308 (370)
.++.++|++++|++....... + . .+ ......++..++.+. .+||||||||||+++.... ..+.++|.+
T Consensus 184 ~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg~lt~--nAL~AAd~v 260 (387)
T PHA02519 184 KPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLGTGTI--NVVCAADVI 260 (387)
T ss_pred ecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCccHHHH--HHHHHhCEE
Confidence 666778999999874321110 0 0 00 112345666666665 7899999999999985444 447788999
Q ss_pred EEEecCCcchHHHHHHHHHHHHcC-------C-CCeEEEEEcCCccC
Q 017486 309 VIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFD 347 (370)
Q Consensus 309 iiV~~p~~~s~~~~~~~~~~l~~~-------~-~~~~gvV~N~v~~~ 347 (370)
++++.|+..++..+.++++++.+. + .+.+.+++||++.+
T Consensus 261 liPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (387)
T PHA02519 261 VVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLT 307 (387)
T ss_pred EEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCC
Confidence 999999999988877766555321 1 22466899998865
No 26
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.90 E-value=1.1e-23 Score=206.75 Aligned_cols=173 Identities=21% Similarity=0.268 Sum_probs=122.9
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC-CCCCCCCCcCCCCcccc------------cc-cCCCCCc
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA-DVYGPSLPTMVSPENRL------------LE-MNPEKRT 236 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~-D~~~~sl~~~l~~~~~~------------~~-~~~~~~~ 236 (370)
.++++|+|+|.||||||||+|+|||.+||+.|+|||+||+ |+|+ +++.+||..... .. .......
T Consensus 104 ~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~-nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 182 (388)
T PRK13705 104 VFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYA 182 (388)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCC-chhhhcCcCccccccccccHHHHHhcCCCchhhh
Confidence 3568999999999999999999999999999999999996 9988 455666643211 00 1112345
Q ss_pred eeecccCCeeEEecCCCCcccc--c---c-CC---chHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCe
Q 017486 237 IIPTEYLGVKLVSFGFSGQGRA--I---M-RG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 307 (370)
Q Consensus 237 i~~~~~~~l~vl~~g~~~~~~~--~---~-~~---~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~ 307 (370)
+.++.++|++++|++....... + . .+ ......++..++.+. .+||||||||||+++.... ..+.++|.
T Consensus 183 i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~~~t~--nal~AaD~ 259 (388)
T PRK13705 183 IKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLGIGTI--NVVCAADV 259 (388)
T ss_pred eecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchhHHHH--HHHHHcCE
Confidence 5666778999999764321110 0 0 00 112345666666664 7899999999999985544 44778899
Q ss_pred EEEEecCCcchHHHHHHHHHHHHcC-------C-CCeEEEEEcCCccC
Q 017486 308 AVIVTTPQKLAFIDVAKGVRMFSKL-------K-VPCIAVVENMCHFD 347 (370)
Q Consensus 308 viiV~~p~~~s~~~~~~~~~~l~~~-------~-~~~~gvV~N~v~~~ 347 (370)
+|+++.++..++..+.++++.+... + .+.+.+++||++.+
T Consensus 260 viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~ 307 (388)
T PRK13705 260 LIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNS 307 (388)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCC
Confidence 9999999999998887777666532 1 13356899998764
No 27
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.90 E-value=1.6e-23 Score=206.42 Aligned_cols=172 Identities=26% Similarity=0.329 Sum_probs=121.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccc-----------c----ccCCCCCc
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL-----------L----EMNPEKRT 236 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~-----------~----~~~~~~~~ 236 (370)
.+++|+|+|.||||||||+|+|||.+||+.|+||++||+|+|+ +++.+||..... . ......+.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 181 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPLSEI 181 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCHHhh
Confidence 4689999999999999999999999999999999999999975 777777754321 0 01122344
Q ss_pred eeecccCCeeEEecCCCCcccc------ccC----CchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCC
Q 017486 237 IIPTEYLGVKLVSFGFSGQGRA------IMR----GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLT 306 (370)
Q Consensus 237 i~~~~~~~l~vl~~g~~~~~~~------~~~----~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d 306 (370)
+.+...+|++++|++....... ... .......+.+.++.+. ..||||||||||+.+.... ..+.++|
T Consensus 182 i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~--~al~aad 258 (387)
T TIGR03453 182 IRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLGFLTL--SALCAAT 258 (387)
T ss_pred cccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHhHHHH--HHHHHcC
Confidence 5556678999999764311110 001 1112234566666554 7899999999999875444 4477789
Q ss_pred eEEEEecCCcchHHHHHHHHHH-------HHcC----CCCeEEEEEcCCccC
Q 017486 307 AAVIVTTPQKLAFIDVAKGVRM-------FSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 307 ~viiV~~p~~~s~~~~~~~~~~-------l~~~----~~~~~gvV~N~v~~~ 347 (370)
.+|+|+.|+..++..+..+++. +++. +...+++|+|+++..
T Consensus 259 ~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 310 (387)
T TIGR03453 259 GVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPN 310 (387)
T ss_pred eeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCC
Confidence 9999999998887776554433 3332 245689999999864
No 28
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.90 E-value=2.7e-23 Score=194.77 Aligned_cols=169 Identities=23% Similarity=0.242 Sum_probs=111.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc-----cccc--C---CCCCceeeccc
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-----LLEM--N---PEKRTIIPTEY 242 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~-----~~~~--~---~~~~~i~~~~~ 242 (370)
||+|+|. +||||||||+|+|||.+||++|+||++||+|+|+++...+++.... .... . ...+.+ ....
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~ 78 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVI-FEGF 78 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhhe-eecC
Confidence 4789999 7999999999999999999999999999999998766555442211 1100 0 122223 3445
Q ss_pred CCeeEEecCCCCcccccc-CCch-HHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHH-HhhHhCCCeEEEEecCCcchH
Q 017486 243 LGVKLVSFGFSGQGRAIM-RGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 243 ~~l~vl~~g~~~~~~~~~-~~~~-~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~-~~~~~~~d~viiV~~p~~~s~ 319 (370)
.+++++|++......... .... ....++.+ ..+. ++|||||||||+......+. .....++|.+++|++|+..++
T Consensus 79 ~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~l-~~~~-~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl 156 (270)
T cd02040 79 GGIKCVESGGPEPGVGCAGRGVITAINLLEEL-GAYE-DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 156 (270)
T ss_pred CCeEEEeCCCCCCCCCCcCcchhhHHHHHHhc-Cccc-cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHH
Confidence 799999987643221111 1111 11122322 3333 68999999998754211111 111225799999999999999
Q ss_pred HHHHHHHHHHHcC----CCCeEEEEEcCCc
Q 017486 320 IDVAKGVRMFSKL----KVPCIAVVENMCH 345 (370)
Q Consensus 320 ~~~~~~~~~l~~~----~~~~~gvV~N~v~ 345 (370)
.++.++++.+.+. +.++.|+|.|+..
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~ 186 (270)
T cd02040 157 YAANNICKGILKYAKSGGVRLGGLICNSRN 186 (270)
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEecCC
Confidence 9988887666543 5778899999854
No 29
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.90 E-value=5e-23 Score=181.49 Aligned_cols=155 Identities=28% Similarity=0.351 Sum_probs=108.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~ 254 (370)
.|+|+|+|||+||||+|+|||.+| +||++||+|+++|+++.+|+.+.......... ..........+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~- 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVG--GKKAVIDPELCISCGLC- 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCccccccceec--CCceEEchhhhccccch-
Confidence 389999999999999999999999 79999999999999999999765321100000 00000111111111110
Q ss_pred ccccccCCchHHHHHHHHH-HhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCC
Q 017486 255 QGRAIMRGPMVSGVINQLL-TTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (370)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll-~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~ 333 (370)
++.. ..+.+.+ ....++.||||||||||+.++..... +..+|.+++|++|+..++.++.++++.+++.+
T Consensus 74 -------~~~~-~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~--l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~ 143 (179)
T cd03110 74 -------GKLV-TEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIAS--LTGADAALLVTEPTPSGLHDLERAVELVRHFG 143 (179)
T ss_pred -------HHHH-HHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHH--HHcCCEEEEEecCCcccHHHHHHHHHHHHHcC
Confidence 1111 1222222 11124789999999999988755443 55679999999999999999999999999988
Q ss_pred CCeEEEEEcCCccC
Q 017486 334 VPCIAVVENMCHFD 347 (370)
Q Consensus 334 ~~~~gvV~N~v~~~ 347 (370)
.+ +++|+|+++..
T Consensus 144 ~~-~~vV~N~~~~~ 156 (179)
T cd03110 144 IP-VGVVINKYDLN 156 (179)
T ss_pred CC-EEEEEeCCCCC
Confidence 87 47999998864
No 30
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.90 E-value=2.1e-22 Score=190.68 Aligned_cols=165 Identities=21% Similarity=0.143 Sum_probs=112.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc-ccc----------ccCCCCCceeecccCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLL----------EMNPEKRTIIPTEYLG 244 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~-~~~----------~~~~~~~~i~~~~~~~ 244 (370)
|+|+ +||||||||+++|||.+||++|+|||+||+|+|++....+.|... .+. ......+.+.+ ..+|
T Consensus 3 ia~~-gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~~l~g~~~~~i~~~~~~~~~~~~~~~~~~~i~~-~~~~ 80 (290)
T CHL00072 3 LAVY-GKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTFTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYK-GYGG 80 (290)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccccccCcCCCCHHHHHhhcccccccCChhheEEe-CCCC
Confidence 8888 599999999999999999999999999999999865544444321 111 01112233433 3679
Q ss_pred eeEEecCCCCccccc--cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHH
Q 017486 245 VKLVSFGFSGQGRAI--MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (370)
Q Consensus 245 l~vl~~g~~~~~~~~--~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~ 322 (370)
++++|.+........ .........++.+ ... ++|||||||||++.....+. ..+..+|.+++|+.|+..++.++
T Consensus 81 l~lip~~~~~~~~~~~~~~~~~~~~ll~~l-~~~--~~yD~IiIDt~~~l~~~a~~-aal~~AD~viIp~~p~~~sl~~~ 156 (290)
T CHL00072 81 VDCVEAGGPPAGAGCGGYVVGETVKLLKEL-NAF--YEYDIILFDVLGDVVCGGFA-APLNYADYCIIITDNGFDALFAA 156 (290)
T ss_pred eEEEeCCCCCCccchhhcccHHHHHHHHHh-hcc--ccCCEEEEecCCcceechhh-hhhhcCCEEEEEecCCHHHHHHH
Confidence 999998865322211 1111112233333 221 47999999998875432221 22456799999999999999999
Q ss_pred HHHHHHHHcC----CCCeEEEEEcCCcc
Q 017486 323 AKGVRMFSKL----KVPCIAVVENMCHF 346 (370)
Q Consensus 323 ~~~~~~l~~~----~~~~~gvV~N~v~~ 346 (370)
.++++.++.. +.+..|+|+||++.
T Consensus 157 ~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 157 NRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred HHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 9998877654 46688999999874
No 31
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.90 E-value=1e-22 Score=190.91 Aligned_cols=166 Identities=21% Similarity=0.187 Sum_probs=111.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCc--ccc---c-------ccCCCCCceeeccc
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRL---L-------EMNPEKRTIIPTEY 242 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~--~~~---~-------~~~~~~~~i~~~~~ 242 (370)
+|+|. +||||||||+|+|||.+||++|+|||+||+|+|.+. ...++.. ..+ . ......+.+ ....
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~-~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i-~~~~ 78 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDS-TFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVI-YTGY 78 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccccc-cceecCCCCCcHHHHHHhccccccCCCHHHee-EeCC
Confidence 68888 899999999999999999999999999999999744 4444321 111 1 001112223 3445
Q ss_pred CCeeEEecCCCCcccc--ccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHH
Q 017486 243 LGVKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (370)
Q Consensus 243 ~~l~vl~~g~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~ 320 (370)
.|++++|.+....... ..........++++ .. +++|||||||||++....... ..+.++|.+++|++|+..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~-~~~yD~ViID~~~~~~~~~~~-~~l~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 79 GGVDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HI-LDDYDVILFDVLGDVVCGGFA-TPLQYADYALVVAANDFDALF 154 (268)
T ss_pred CCeEEEecCCCCCCCcccceehhhhHHHhhhc--cc-cccCCEEEEecCCccccCccc-cchhhcCEEEEEecCchhHHH
Confidence 7999999776432211 11111111223331 12 368999999998765432221 224567999999999999999
Q ss_pred HHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 321 DVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 321 ~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.++++.+.+ .++++.|+|+||++.+
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 99888877764 3577899999998764
No 32
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.89 E-value=1.1e-22 Score=191.82 Aligned_cols=168 Identities=20% Similarity=0.126 Sum_probs=108.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc-c---ccc-----cCCCCCceeecccC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-R---LLE-----MNPEKRTIIPTEYL 243 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~-~---~~~-----~~~~~~~i~~~~~~ 243 (370)
|++|+|+ +||||||||+|.|||.+||++|+|||+||+|+|+++...+.+... . +.. .....+.+.+ ..+
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~l~~~~~~~l~d~~~~~~~~~~~~~~~i~~-~~~ 78 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRNLVGEKIPTVLDVLREKGIDNLGLEDIIYE-GFN 78 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcccccccccCccCCCHHHHHHhcCCCCCCHHHheee-CCC
Confidence 5789999 899999999999999999999999999999999866555433211 1 110 1122334443 468
Q ss_pred CeeEEecCCCCccccccCCch-H-HHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-HHhhHhCCCeEEEEecCCcchHH
Q 017486 244 GVKLVSFGFSGQGRAIMRGPM-V-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 320 (370)
Q Consensus 244 ~l~vl~~g~~~~~~~~~~~~~-~-~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l-~~~~~~~~d~viiV~~p~~~s~~ 320 (370)
|++++|++............. . ...++. +..+.+.+|||||||||++.....+ ....+.++|.+++|++|+..++.
T Consensus 79 ~l~lipa~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~ 157 (279)
T PRK13230 79 GIYCVESGGPEPGYGCAGRGVITAIDLLKK-LGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIY 157 (279)
T ss_pred CcEEEECCCCCCCCCcCCcchhhHHHHHHH-cCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHH
Confidence 999999875432210000000 0 111222 1122224799999999875421111 11123457999999999999999
Q ss_pred HHHHHHHHHHc----CCCCeEEEEEcC
Q 017486 321 DVAKGVRMFSK----LKVPCIAVVENM 343 (370)
Q Consensus 321 ~~~~~~~~l~~----~~~~~~gvV~N~ 343 (370)
++.++++.+++ .+.++.|+|.|+
T Consensus 158 ~~~~ll~~i~~~~~~~~~~i~gIv~n~ 184 (279)
T PRK13230 158 AANNICKGIKRFAKRGKSALGGIIYNG 184 (279)
T ss_pred HHHHHHHHHHHHhhcCCCcceEEEEec
Confidence 99888776653 366677888664
No 33
>PRK10037 cell division protein; Provisional
Probab=99.89 E-value=5.6e-23 Score=190.90 Aligned_cols=164 Identities=16% Similarity=0.226 Sum_probs=107.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--------ccccCCCCCceeecccCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--------LLEMNPEKRTIIPTEYLG 244 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--------~~~~~~~~~~i~~~~~~~ 244 (370)
|++|+|.|.||||||||+|+|||.+||++|+||++||+|+|+ ++...||.... +.......+.+.+. ..|
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRY-TSQ 78 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhccc-cCC
Confidence 469999999999999999999999999999999999999986 55556664321 11111122223332 479
Q ss_pred eeEEecCCCCccc-cccCC-chHHHHHHHHHHhcCC-CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHH
Q 017486 245 VKLVSFGFSGQGR-AIMRG-PMVSGVINQLLTTTEW-GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (370)
Q Consensus 245 l~vl~~g~~~~~~-~~~~~-~~~~~~l~~ll~~~~~-~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~ 321 (370)
++++|.+...... ..... ......+...++.++. .+||||||||||+.+.... ..+.++|.+++|++|+..+.
T Consensus 79 l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~~~~~--~al~aaD~vlvpv~~~~~~~-- 154 (250)
T PRK10037 79 LDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGASPLTR--QLLSLCDHSLAIVNVDANCH-- 154 (250)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCccHHHH--HHHHhCCEEEEEcCcCHHHH--
Confidence 9999986322111 00000 0011234455555421 5799999999999875444 34667899999999987643
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 322 VAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
++..++...+.+.+++|+++.
T Consensus 155 ----i~~~~~~~~~~~~i~~n~~~~ 175 (250)
T PRK10037 155 ----IRLHQQALPAGAHILINDLRI 175 (250)
T ss_pred ----HhhhccccCCCeEEEEecCCc
Confidence 333333222335688899874
No 34
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.89 E-value=7.8e-23 Score=194.25 Aligned_cols=169 Identities=18% Similarity=0.164 Sum_probs=113.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc--cc---cc------cCCCCCceeecc
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RL---LE------MNPEKRTIIPTE 241 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~--~~---~~------~~~~~~~i~~~~ 241 (370)
+|+|+|. +||||||||+++|||.+|++.|+|||+||+|+|.++...+++... .+ .. .....+. +...
T Consensus 4 ~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~ 81 (295)
T PRK13234 4 LRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDV-MKIG 81 (295)
T ss_pred ceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHH-heec
Confidence 4899997 999999999999999999999999999999999988876655321 11 10 1111222 3345
Q ss_pred cCCeeEEecCCCCccccccCCchHHHHHH-HHHHhcC-CCCCcEEEEcCCCCCChHHH-HHhhHhCCCeEEEEecCCcch
Q 017486 242 YLGVKLVSFGFSGQGRAIMRGPMVSGVIN-QLLTTTE-WGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLA 318 (370)
Q Consensus 242 ~~~l~vl~~g~~~~~~~~~~~~~~~~~l~-~ll~~~~-~~~yD~VIIDtpp~~~~~~l-~~~~~~~~d~viiV~~p~~~s 318 (370)
.+|++++|++...... ........++ ..++.+. .++||||||||+++.....+ ......++|.+|+|++|+..+
T Consensus 82 ~~gl~lipa~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe~~S 158 (295)
T PRK13234 82 YKGIKCVESGGPEPGV---GCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMA 158 (295)
T ss_pred CCCeEEEECCCCCCCC---CCCcceeeeHHHHHHHcCCCccCCEEEEEcCCCceECCCccccccccCceEEEecCccHHH
Confidence 6799999986432211 1111111222 2333321 26899999999654321111 111112679999999999999
Q ss_pred HHHHHHHHHHHHcC----CCCeEEEEEcCCcc
Q 017486 319 FIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (370)
Q Consensus 319 ~~~~~~~~~~l~~~----~~~~~gvV~N~v~~ 346 (370)
+.++.++++.+.+. +.++.|+|+|+.+.
T Consensus 159 l~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt 190 (295)
T PRK13234 159 LYAANNIAKGILKYANSGGVRLGGLICNERQT 190 (295)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Confidence 99999998777653 46788999997553
No 35
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.89 E-value=3.1e-22 Score=187.62 Aligned_cols=165 Identities=21% Similarity=0.167 Sum_probs=111.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCc--cccc----------ccCCCCCceeeccc
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRLL----------EMNPEKRTIIPTEY 242 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~--~~~~----------~~~~~~~~i~~~~~ 242 (370)
+|+|+ +||||||||+|+|||++||++|+|||+||+|+|.+ +...++.. ..+. ......+.+ ...+
T Consensus 2 ~i~v~-gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i-~~~~ 78 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHD-STFTLTGFLIPTVIDILEEVDFHYEELWPEDVI-YEGY 78 (267)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCC-cceeccCCCCCCHHHHHHhccccccCCChhheE-EECC
Confidence 68888 69999999999999999999999999999999874 44444321 1111 111122334 3456
Q ss_pred CCeeEEecCCCCcccc--ccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHH
Q 017486 243 LGVKLVSFGFSGQGRA--IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (370)
Q Consensus 243 ~~l~vl~~g~~~~~~~--~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~ 320 (370)
+|++++|++....... ..........++++ . . ..+|||||||||++.....+. ..+..+|.+++|++|+..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~yD~vIIDt~g~~~~~~~~-~al~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 79 GGVDCVEAGGPPAGAGCGGYVVGETVKLLKEL-N-L-FEEYDVILFDVLGDVVCGGFA-APLNYADYALIVTDNDFDSIF 154 (267)
T ss_pred CCcEEEEcCCCCCCccccchHHHHHHHHHHHc-c-c-cccCCEEEEeCCCCcccccch-hhhhhcCEEEEEecCCcccHH
Confidence 8999999875432211 11011111233331 1 2 268999999998876432221 124567999999999999999
Q ss_pred HHHHHHHHHHc----CCCCeEEEEEcCCcc
Q 017486 321 DVAKGVRMFSK----LKVPCIAVVENMCHF 346 (370)
Q Consensus 321 ~~~~~~~~l~~----~~~~~~gvV~N~v~~ 346 (370)
.+.++++.+++ .++++.|+|+||++.
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 99988877763 367789999999875
No 36
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.89 E-value=8.5e-23 Score=190.53 Aligned_cols=172 Identities=26% Similarity=0.349 Sum_probs=120.7
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCCCCCCCcCCCCccc-------ccccCCC---CCceeec
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENR-------LLEMNPE---KRTIIPT 240 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~~~sl~~~l~~~~~-------~~~~~~~---~~~i~~~ 240 (370)
++++|+|+|.||||||||+|.|||.+|| ..|+|||+||+|+|+ ++..+++.... +...... ......
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV- 78 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc-hhhHhcCCCcccchhHHHHHhcccccccchhccc-
Confidence 4689999999999999999999999999 667999999999995 67777776443 1111001 111122
Q ss_pred ccCCeeEEecCCCCcc-ccc-cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcch
Q 017486 241 EYLGVKLVSFGFSGQG-RAI-MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (370)
Q Consensus 241 ~~~~l~vl~~g~~~~~-~~~-~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s 318 (370)
...+++++|....... ... .........++.++..+ +++||||||||||+.+.. +...+.++|.+++++.++..+
T Consensus 79 ~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~~~yD~iiID~pp~l~~l--~~nal~asd~vlIP~~~~~~~ 155 (259)
T COG1192 79 VIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPV-KDDYDYIIIDTPPSLGVL--TLNALAAADHVLIPVQPEFLD 155 (259)
T ss_pred CCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhh-ccCCCEEEECCCCchhHH--HHHHHHHcCeeEEecCchHHH
Confidence 4578999987644321 111 11122334455555433 378999999999998644 444577789999999999999
Q ss_pred HHHHHHHHHHHHcCC------CCeEEEEEcCCccCC
Q 017486 319 FIDVAKGVRMFSKLK------VPCIAVVENMCHFDA 348 (370)
Q Consensus 319 ~~~~~~~~~~l~~~~------~~~~gvV~N~v~~~~ 348 (370)
+..+..+++.+.+.. ....+++.||...+.
T Consensus 156 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (259)
T COG1192 156 LEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRT 191 (259)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCc
Confidence 999888776665432 267889999988753
No 37
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.89 E-value=3.8e-22 Score=192.00 Aligned_cols=164 Identities=21% Similarity=0.270 Sum_probs=122.7
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccccc----ccC----CCC----Ccee
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL----EMN----PEK----RTII 238 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~----~~~----~~~----~~i~ 238 (370)
..+++|+|+|+|||+||||+|+|||.++++.|+||++||+|++++++..+||.+.... ... ... ....
T Consensus 91 ~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (322)
T TIGR03815 91 ARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRDAL 170 (322)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHHhC
Confidence 3578999999999999999999999999999999999999999999988888653210 000 000 0112
Q ss_pred ecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcch
Q 017486 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (370)
Q Consensus 239 ~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s 318 (370)
+. ..++++++.+.... . ... ...++++++.+. +.||||||||||+.+...... +..+|.+++|++++..+
T Consensus 171 ~~-~~~l~vl~~~~~~~-~-~~~----~~~l~~~l~~l~-~~~D~VIID~p~~~~~~~~~~--L~~AD~vliV~~~~~~s 240 (322)
T TIGR03815 171 PR-RGGLSVLSWGRAVG-A-ALP----PAAVRAVLDAAR-RGGDLVVVDLPRRLTPAAETA--LESADLVLVVVPADVRA 240 (322)
T ss_pred CC-cCCeEEEecCCCCc-C-CCC----HHHHHHHHHHHH-hcCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEcCCcHHH
Confidence 22 46899999776431 1 122 234555555554 789999999999987654443 56779999999999999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEcCCc
Q 017486 319 FIDVAKGVRMFSKLKVPCIAVVENMCH 345 (370)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~gvV~N~v~ 345 (370)
+..+.++++.+.+.+.+ +++|+|+..
T Consensus 241 l~~a~r~l~~l~~~~~~-~~lVv~~~~ 266 (322)
T TIGR03815 241 VAAAARVCPELGRRNPD-LRLVVRGPA 266 (322)
T ss_pred HHHHHHHHHHHhhhCCC-eEEEEeCCC
Confidence 99999999999876644 577888654
No 38
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.88 E-value=3.4e-22 Score=187.09 Aligned_cols=171 Identities=22% Similarity=0.192 Sum_probs=113.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc-c---cc-c-CCCCCceeecccCCee
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-L---LE-M-NPEKRTIIPTEYLGVK 246 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~-~---~~-~-~~~~~~i~~~~~~~l~ 246 (370)
||+|+|. +||||||||+|+|||.+|++.| |||+||+|+|.+....+++.... + .. . ....+.+....+++++
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTTRTLCGKRIPTVLDTLKDNRKPELEDIIHEGFNGIL 79 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccchhhhcCCccHHHHHHhhcCCCChhHhheeCCCCeE
Confidence 5799999 7999999999999999999999 99999999998665555443211 1 11 0 0111223344567999
Q ss_pred EEecCCCCcccc-ccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHH-HhhHhCCCeEEEEecCCcchHHHHHH
Q 017486 247 LVSFGFSGQGRA-IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 247 vl~~g~~~~~~~-~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~-~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (370)
++|.+....... ..........+.+.+..+ +++||||||||++......+. .....++|.+++|++|+..++.++.+
T Consensus 80 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~ 158 (264)
T PRK13231 80 CVESGGPEPGVGCAGRGVIVAMNLLENLGVF-DEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANN 158 (264)
T ss_pred EEEcCCCCCCCCCcCceeeehhhhHHhhccc-cCCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHH
Confidence 999775322110 001100111122233333 378999999998754211111 01113679999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCcc
Q 017486 325 GVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
+++.++..+.+..|+|.|+.+.
T Consensus 159 ~~~~i~~~~~~~~~vv~~~~~~ 180 (264)
T PRK13231 159 IARGIKKLKGKLGGIICNCRGI 180 (264)
T ss_pred HHHHHHHcCCcceEEEEcCCCC
Confidence 9999998877778888887653
No 39
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.88 E-value=6.4e-22 Score=186.26 Aligned_cols=167 Identities=23% Similarity=0.240 Sum_probs=109.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc------cccc----CCCCCceeecccC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEM----NPEKRTIIPTEYL 243 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~------~~~~----~~~~~~i~~~~~~ 243 (370)
++|+|+ +||||||||+|.|||.+||++|+||++||+|+|+++...+++.... +... ....+ +......
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~i~~~~~ 78 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELED-VIKEGFG 78 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHH-eeeeCCC
Confidence 479998 7999999999999999999999999999999999776655543221 1111 11222 3344567
Q ss_pred CeeEEecCCCCcccc-ccCCchH-HHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-HHhhHhCCCeEEEEecCCcchHH
Q 017486 244 GVKLVSFGFSGQGRA-IMRGPMV-SGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFI 320 (370)
Q Consensus 244 ~l~vl~~g~~~~~~~-~~~~~~~-~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l-~~~~~~~~d~viiV~~p~~~s~~ 320 (370)
|++++|++....... ....... ...++.+ ..+. ++||||||||++......+ ......++|.+++|++|+..++.
T Consensus 79 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~ 156 (275)
T TIGR01287 79 GIRCVESGGPEPGVGCAGRGVITAINLLEEL-GAYE-DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALY 156 (275)
T ss_pred CEEEEeCCCCCccCCCccchhhhHHHHHHHh-hhhh-ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHH
Confidence 999999764322110 0111110 1233332 2333 6899999999764421111 11112357999999999999999
Q ss_pred HHHHHHHHHHc----CCCCeEEEEEcCC
Q 017486 321 DVAKGVRMFSK----LKVPCIAVVENMC 344 (370)
Q Consensus 321 ~~~~~~~~l~~----~~~~~~gvV~N~v 344 (370)
++.++++.+.+ .+.++.++|.|+.
T Consensus 157 ~~~~l~~~i~~~~~~~~~~~~giv~n~~ 184 (275)
T TIGR01287 157 AANNICKGILKYAKSGGVRLGGLICNSR 184 (275)
T ss_pred HHHHHHHHHHHHHhcCCCeeeEEEEcCC
Confidence 98888765433 4667888998874
No 40
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.87 E-value=1.6e-21 Score=171.22 Aligned_cols=128 Identities=34% Similarity=0.534 Sum_probs=103.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~ 254 (370)
+|+|+|+|||+||||+|+|||.+++++|+||++||+|+++++++.+++.+... .. +
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~-------------~~-~---------- 56 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRV-------------VY-T---------- 56 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccC-------------Cc-c----------
Confidence 58999999999999999999999999999999999999988887766543210 00 0
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCC
Q 017486 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (370)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~ 334 (370)
+.+++ . + ||||||+||+.+...... +..+|.+++|++|+..++..+.++++.+++.+.
T Consensus 57 --------------~~~~~---~-~--d~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~ 114 (179)
T cd02036 57 --------------LHDVL---A-G--DYILIDSPAGIERGFITA--IAPADEALLVTTPEISSLRDADRVKGLLEALGI 114 (179)
T ss_pred --------------hhhcc---c-C--CEEEEECCCCCcHHHHHH--HHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCC
Confidence 00111 0 1 999999999887654433 566799999999999999999999999998888
Q ss_pred CeEEEEEcCCccCC
Q 017486 335 PCIAVVENMCHFDA 348 (370)
Q Consensus 335 ~~~gvV~N~v~~~~ 348 (370)
+..++|+|+++.+.
T Consensus 115 ~~~~iv~N~~~~~~ 128 (179)
T cd02036 115 KVVGVIVNRVRPDM 128 (179)
T ss_pred ceEEEEEeCCcccc
Confidence 89999999998754
No 41
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.87 E-value=2.6e-21 Score=184.91 Aligned_cols=181 Identities=24% Similarity=0.384 Sum_probs=123.6
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--cccc---CC-CC-----Cceee
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEM---NP-EK-----RTIIP 239 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~~~~---~~-~~-----~~i~~ 239 (370)
+..++|+|+ +|||+||||+++|||.+||++|+||++||+|+++++++.+||.... +.+. .. .. ..+..
T Consensus 29 ~~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~dv~~ 107 (329)
T cd02033 29 KKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCF 107 (329)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeeceEE
Confidence 356899998 6999999999999999999999999999999999999999985432 1110 00 00 11111
Q ss_pred cccCCeeEEecCCCCccccccCCchHHHHHH--HHHHh---cCCCCCcEEEEcCCCCCC--hHHHHHhhHhCCCeEEEEe
Q 017486 240 TEYLGVKLVSFGFSGQGRAIMRGPMVSGVIN--QLLTT---TEWGELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVT 312 (370)
Q Consensus 240 ~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~--~ll~~---~~~~~yD~VIIDtpp~~~--~~~l~~~~~~~~d~viiV~ 312 (370)
...|++++..+ ....|++......+. ++++. .+| .||||||||+++.. ...+..+. ..+|.+++|+
T Consensus 108 -~~~gv~~~~~g----~p~~~~G~~~~~~i~~~~~l~~l~~~~w-~~DyVliD~~gdv~~ggf~l~i~~-~~ad~VIVVt 180 (329)
T cd02033 108 -KRDGVFAMELG----GPEVGRGCGGRGIIHGFELLEKLGFHDW-DFDYVLLDFLGDVVCGGFGLPIAR-DMAQKVIVVG 180 (329)
T ss_pred -EeCCEEEecCC----CCeecccccchHHHHHHHHHHHccCccc-cCCEEEEecCCcceeccccchhhh-cCCceEEEeC
Confidence 12477776543 334566665433222 34444 366 79999999977442 22222221 2358999999
Q ss_pred cCCcchHHH---HHHHHHHHHcCC--CCeEEEEEcCCccCCCCccccccCCChHHHHHhHcCC
Q 017486 313 TPQKLAFID---VAKGVRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVCTLSNY 370 (370)
Q Consensus 313 ~p~~~s~~~---~~~~~~~l~~~~--~~~~gvV~N~v~~~~~~~~~~~~g~~~~~~~a~~~~~ 370 (370)
+|+..++.+ +.+.++++++.+ .+++|+|+||++ +++.++.+++.+++
T Consensus 181 ~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d-----------~~~~ie~~ae~lgi 232 (329)
T cd02033 181 SNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDD-----------GTGEAQAFAAHAGI 232 (329)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcC-----------CcchHHHHHHHhCC
Confidence 999999965 566678888774 678999999965 34446677766653
No 42
>PHA02518 ParA-like protein; Provisional
Probab=99.87 E-value=9.4e-22 Score=177.41 Aligned_cols=141 Identities=26% Similarity=0.310 Sum_probs=101.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~ 253 (370)
++|+|+|.|||+||||+|+|||.+|++.|+||++||+|+|++...+ ++... ... ++++...
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~-~~~~~-------~~~----------~~i~~~~- 61 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDW-AEARE-------EGE----------PLIPVVR- 61 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHH-HHhcc-------cCC----------CCCchhh-
Confidence 4899999999999999999999999999999999999999855433 22110 000 1111110
Q ss_pred CccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcC-
Q 017486 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL- 332 (370)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~- 332 (370)
.+. .+.+.+..+. ..||||||||||+.+..... .+..+|.+++|+.|+..++..+.++++.++..
T Consensus 62 -------~~~----~~~~~l~~~~-~~~d~viiD~p~~~~~~~~~--~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~ 127 (211)
T PHA02518 62 -------MGK----SIRADLPKVA-SGYDYVVVDGAPQDSELARA--ALRIADMVLIPVQPSPFDIWAAPDLVELIKARQ 127 (211)
T ss_pred -------ccH----HHHHHHHHHh-ccCCEEEEeCCCCccHHHHH--HHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHH
Confidence 011 1233333333 78999999999997755443 36678999999999999999888888777643
Q ss_pred ----CCCeEEEEEcCCccC
Q 017486 333 ----KVPCIAVVENMCHFD 347 (370)
Q Consensus 333 ----~~~~~gvV~N~v~~~ 347 (370)
+.+..++|.|+....
T Consensus 128 ~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 128 EVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred hhCCCCceEEEEEeccCCc
Confidence 466788999997653
No 43
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.86 E-value=3.6e-21 Score=182.72 Aligned_cols=181 Identities=19% Similarity=0.236 Sum_probs=107.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc--cccccC----------CCCCceeecc
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN--RLLEMN----------PEKRTIIPTE 241 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~--~~~~~~----------~~~~~i~~~~ 241 (370)
|+|+|+ +|||+||||+|+|||.+||++|+||++||+|++.+++..+++... .+.+.. ...+.+.+..
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~~ 79 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKTT 79 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeecc
Confidence 489999 999999999999999999999999999999999988888876321 111100 0111122221
Q ss_pred cCCeeEEecCCCCccccccCC---ch---HHHHHHHHHHhcCCCCCcEEEEcCCCCC--ChHHHHHhhHhCCCeEEEEec
Q 017486 242 YLGVKLVSFGFSGQGRAIMRG---PM---VSGVINQLLTTTEWGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTT 313 (370)
Q Consensus 242 ~~~l~vl~~g~~~~~~~~~~~---~~---~~~~l~~ll~~~~~~~yD~VIIDtpp~~--~~~~l~~~~~~~~d~viiV~~ 313 (370)
..+...-.............+ .. ....++.+ ..+. .+||||||||++.. +..... .....+|.+++|+.
T Consensus 80 ~~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l-~~~~-~~yD~IliD~~~~~~~~g~~~~-~a~~~Ad~viVvt~ 156 (296)
T TIGR02016 80 IMNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKL-GFHD-WDFDFVLMDFLGDVVCGGFATP-LARSLAEEVIVIGS 156 (296)
T ss_pred ccCcCCCcceeecCCCCcccccCcchhhHHHHHHHHh-hhhc-ccCCEEEEecCCCccccccccc-hhhhhCCeEEEEec
Confidence 111110000000000000000 11 01222222 1122 47999999997643 111111 11235799999999
Q ss_pred CCcchHHHHHHH---HHHHHcCC--CCeEEEEEcCCccCCCCccccccCCChHHHHHhHcC
Q 017486 314 PQKLAFIDVAKG---VRMFSKLK--VPCIAVVENMCHFDADGKRYYPFGRGSGSQVCTLSN 369 (370)
Q Consensus 314 p~~~s~~~~~~~---~~~l~~~~--~~~~gvV~N~v~~~~~~~~~~~~g~~~~~~~a~~~~ 369 (370)
++..++.++.++ ++++++.+ ++++|+|+||+.. .+..++++++++
T Consensus 157 ~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~-----------~~~~~~~~~~~~ 206 (296)
T TIGR02016 157 NDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG-----------SGEAQAFAREVG 206 (296)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC-----------ccHHHHHHHHcC
Confidence 999998765554 45666664 6789999999753 334566666665
No 44
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.86 E-value=2.4e-21 Score=176.62 Aligned_cols=164 Identities=21% Similarity=0.280 Sum_probs=114.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc----c----cccCCCCCceeecccCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----L----LEMNPEKRTIIPTEYLG 244 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~----~----~~~~~~~~~i~~~~~~~ 244 (370)
|++|+|.|.|||+||||+++|||++|++.|++|++||+|+++ .+...||.... + ..... ..........|
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~-W~~~~~~~~~g 78 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGAD-WQQAAYRYSDG 78 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCC-HHHHhhccCCC
Confidence 579999999999999999999999999999999999999987 78788886633 1 11111 11122234579
Q ss_pred eeEEecCCCCccccc----cCCchHHHHHHHHHHhcC-CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchH
Q 017486 245 VKLVSFGFSGQGRAI----MRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 245 l~vl~~g~~~~~~~~----~~~~~~~~~l~~ll~~~~-~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~ 319 (370)
++++|+|........ +.. .. ..+.+.+..+. ...||+||||+||+.+...... +..+|.+++|+.|+..+.
T Consensus 79 ~~~LPfG~l~~~~~~~~~~l~~-~~-~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~a--l~~aD~vL~V~~~Da~s~ 154 (243)
T PF06564_consen 79 VDFLPFGQLTEAEREAFEQLAQ-DP-QWLARALAALKALGPYDWILIDTPPGPSPYTRQA--LAAADLVLVVVNPDAASH 154 (243)
T ss_pred CEEEcCCCCCHHHHHHHHHhhc-CH-HHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHH--HHhCCeEEEEeCCCHHHH
Confidence 999999976433211 111 11 22233333332 4789999999999987555444 556799999999999987
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..+.+- .+ . .-..+|+|++++.+
T Consensus 155 ~~L~q~--~l---~-~~~~~liNq~~~~s 177 (243)
T PF06564_consen 155 ARLHQR--AL---P-AGHRFLINQYDPAS 177 (243)
T ss_pred HHHHHh--cc---c-CCcEEEEeccCccc
Confidence 665441 11 1 12478999999865
No 45
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.86 E-value=8.3e-22 Score=175.23 Aligned_cols=157 Identities=25% Similarity=0.342 Sum_probs=110.5
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCCc
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQ 255 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~~ 255 (370)
|+|+|+|||+||||+|++||.+|+++|+||++||+|++.+.+..+++......... ...... ..+++ .
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~--------~ 68 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGL---ENANAI-LKNFE--------S 68 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSS---HGHHCH-HESCC--------H
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccc---eehhhh-hhccc--------h
Confidence 78999999999999999999999999999999999999988877765511000000 000000 00000 0
Q ss_pred cccccC--CchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCC
Q 017486 256 GRAIMR--GPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (370)
Q Consensus 256 ~~~~~~--~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~ 333 (370)
...... + .....++++++.+.+..||||||||||+.+...... +..+|.+++|+.|+..++..+.++++.+++.+
T Consensus 69 ~~~~~~~~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~~~~~--l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~ 145 (195)
T PF01656_consen 69 QDIYQGEEY-LDPELLREILESLIKSDYDYIIIDTPPGLSDPVRNA--LAAADYVIVPIEPDPSSIEGAERLIELLKRLG 145 (195)
T ss_dssp HHHHHHCHC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHHHHHH--HHTSSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhh-hHHHHHHHHHHHhhhccccceeecccccccHHHHHH--HHhCceeeeecCCcHHHHHHHHHHHHHHHHhc
Confidence 000000 0 233456666655433459999999999998764433 56779999999999999999999999999887
Q ss_pred --CCeEEEEEcCCccC
Q 017486 334 --VPCIAVVENMCHFD 347 (370)
Q Consensus 334 --~~~~gvV~N~v~~~ 347 (370)
.+.+++|+||++..
T Consensus 146 ~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 146 KKLKIIGVVINRVDPG 161 (195)
T ss_dssp HTEEEEEEEEEEETSC
T ss_pred cccceEEEEEeeeCCC
Confidence 45799999999764
No 46
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.86 E-value=4.1e-21 Score=175.88 Aligned_cols=146 Identities=22% Similarity=0.292 Sum_probs=101.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
|++|+|.|.|||+||||++.|||.+|++.|+||++||+|+|++.. .+++.... . ..++......
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~-~w~~~~~~--------~----~~~~~~~~~~--- 64 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLT-RWKENALR--------S----NTWDPACEVY--- 64 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHH-HHHHhhcc--------c----cCCCccceec---
Confidence 479999999999999999999999999999999999999998543 33221100 0 0000000000
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHc-
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK- 331 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~- 331 (370)
.. .....++..++...++.||||||||||+.+...... +..+|.+|+++.|+..++..+.++++.+.+
T Consensus 65 --------~~-~~~~~l~~~l~~~~~~~yD~iiID~pp~~~~~~~~a--l~~aD~vliP~~ps~~d~~~~~~~~~~v~~~ 133 (231)
T PRK13849 65 --------AA-DELPLLEAAYEDAELQGFDYALADTHGGSSELNNTI--IASSNLLLIPTMLTPLDIDEALSTYRYVIEL 133 (231)
T ss_pred --------CC-CHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH--HHHCCEEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 00 011234444444434689999999999888655443 566799999999999999888877766543
Q ss_pred -----CCCCeEEEEEcCCcc
Q 017486 332 -----LKVPCIAVVENMCHF 346 (370)
Q Consensus 332 -----~~~~~~gvV~N~v~~ 346 (370)
.+.+ ..+|+||++.
T Consensus 134 ~~~~~~~l~-~~iv~~~~~~ 152 (231)
T PRK13849 134 LLSENLAIP-TAILRQRVPV 152 (231)
T ss_pred HHHhCCCCC-eEEEEEeccc
Confidence 2444 4599999864
No 47
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.84 E-value=4.9e-20 Score=167.21 Aligned_cols=169 Identities=27% Similarity=0.332 Sum_probs=114.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccc---------cCCC----------
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE---------MNPE---------- 233 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~---------~~~~---------- 233 (370)
|+.|+|+|||||+||||+|+|||..|+.. +|++|+|+|...|+++.+|+.+..... ....
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~ 79 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE 79 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhccc-cceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHH
Confidence 45899999999999999999999999864 899999999999999999987643100 0000
Q ss_pred ---CCceeecccCCeeEEe------------------------cC-----CCCcc-c-----cccCCchHHHHHHHHHHh
Q 017486 234 ---KRTIIPTEYLGVKLVS------------------------FG-----FSGQG-R-----AIMRGPMVSGVINQLLTT 275 (370)
Q Consensus 234 ---~~~i~~~~~~~l~vl~------------------------~g-----~~~~~-~-----~~~~~~~~~~~l~~ll~~ 275 (370)
..++.........+.| .| ..... . .....+.....+..+...
T Consensus 80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~ 159 (284)
T COG1149 80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKH 159 (284)
T ss_pred hCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHh
Confidence 0111100000000000 00 00000 0 001111223455555555
Q ss_pred cCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 276 TEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 276 ~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
.+ +..|++|||+|||++-..... +..+|.+++||.|++.++++++++++.+++++++ .++|+||.+.
T Consensus 160 a~-E~~~~~IIDsaaG~gCpVi~s--l~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~ 226 (284)
T COG1149 160 AK-ELADLLIIDSAAGTGCPVIAS--LKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNL 226 (284)
T ss_pred hh-hhcceeEEecCCCCCChHHHh--hccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCCC
Confidence 43 347999999999998665544 6678999999999999999999999999999999 5699999843
No 48
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.84 E-value=5e-20 Score=148.57 Aligned_cols=102 Identities=28% Similarity=0.396 Sum_probs=91.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~ 253 (370)
+|+++|+|||+||||++.|||.++++. |++|+++|+|++.++
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------------------------------
Confidence 589999999999999999999999998 999999999999743
Q ss_pred CccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCC
Q 017486 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (370)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~ 333 (370)
||||||+||+.+...... +..+|.+++|+.|+..++..+.++++.+++.+
T Consensus 44 ----------------------------D~IIiDtpp~~~~~~~~~--l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~ 93 (106)
T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAA--LDQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106)
T ss_pred ----------------------------CEEEEeCCCCcCHHHHHH--HHHcCeEEEEecCChHHHHHHHHHHHHHHHcC
Confidence 899999999998655543 56679999999999999999999999999877
Q ss_pred CC---eEEEEEcC
Q 017486 334 VP---CIAVVENM 343 (370)
Q Consensus 334 ~~---~~gvV~N~ 343 (370)
.+ .+.+|+||
T Consensus 94 ~~~~~~~~lVvNr 106 (106)
T cd03111 94 YSLPAKIELVLNR 106 (106)
T ss_pred CCCcCceEEEecC
Confidence 54 68899996
No 49
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.83 E-value=7.4e-21 Score=176.95 Aligned_cols=173 Identities=18% Similarity=0.209 Sum_probs=109.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--ccccCCCC----------CceeecccC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEMNPEK----------RTIIPTEYL 243 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~~~~~~~~----------~~i~~~~~~ 243 (370)
|.++++|||+||||+|+++|..+|+.|+||++||+|++ ++++..|+.+.. ........ ..+......
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~~ 80 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQE 80 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHHH
Confidence 45666999999999999999999999999999999997 599888876521 00000000 000000001
Q ss_pred CeeEEecCCCCc-----cccccCCchHH--HHHHHHHHhcCCCCCcEEEEcCCCCCChH-HHHHh--------hHh--CC
Q 017486 244 GVKLVSFGFSGQ-----GRAIMRGPMVS--GVINQLLTTTEWGELDYLVIDMPPGTGDI-QLTLC--------QVV--PL 305 (370)
Q Consensus 244 ~l~vl~~g~~~~-----~~~~~~~~~~~--~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~l~~~--------~~~--~~ 305 (370)
.++.+..+.... ....+..+... -.+..+.+.+++.+||+|||||||..... .+.+. .+. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~ 160 (254)
T cd00550 81 VLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPER 160 (254)
T ss_pred HHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcc
Confidence 112221110000 00011112222 23344444444578999999999942211 11111 011 13
Q ss_pred CeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCCC
Q 017486 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD 349 (370)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~~ 349 (370)
+.+++|++|+..++.+++++++.+++.++++.|+|+||+.+...
T Consensus 161 ~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~~ 204 (254)
T cd00550 161 TSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPEDV 204 (254)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccccc
Confidence 57999999999999999999999999999999999999988653
No 50
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.83 E-value=1.4e-20 Score=171.18 Aligned_cols=167 Identities=23% Similarity=0.229 Sum_probs=109.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCC-------CCCcCCCCcccc-----c-ccCCCCCceee-cc
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP-------SLPTMVSPENRL-----L-EMNPEKRTIIP-TE 241 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~-------sl~~~l~~~~~~-----~-~~~~~~~~i~~-~~ 241 (370)
|.++++|||+||||++++||..+|++|+||++||+|++.+ ++..+++..... . ........... ..
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNLYREEVDATRRVERAWG 80 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhhhccCChHHHHHHHHHHHHHHHHhhhccc
Confidence 4578899999999999999999999999999999999983 444444421100 0 00000000000 00
Q ss_pred cCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-HHhhHhC--CCeEEEEecCCcch
Q 017486 242 YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVP--LTAAVIVTTPQKLA 318 (370)
Q Consensus 242 ~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l-~~~~~~~--~d~viiV~~p~~~s 318 (370)
..+..+++.+. ...++...-.+.++++.+++.+||||||||||+...... ....+.. +|.+++|++|+..+
T Consensus 81 ~~~~~~~~~~~------~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s 154 (217)
T cd02035 81 GEGGLMLELAA------ALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLP 154 (217)
T ss_pred chhhhHHhHhc------cCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccH
Confidence 01222333222 122222222366666666534499999999997432222 2222222 47899999999999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 319 FIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 319 ~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..++.++++.+++.+.++.|+|+|++....
T Consensus 155 ~~~~~~~l~~l~~~~~~~~glVlN~~~~~~ 184 (217)
T cd02035 155 LYETERAITELALYGIPVDAVVVNRVLPAE 184 (217)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEeCCcCcc
Confidence 999999999999999999999999998754
No 51
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.81 E-value=5.2e-19 Score=157.41 Aligned_cols=165 Identities=21% Similarity=0.264 Sum_probs=122.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCCCCCCCcCCCCcccc---cc----------c-CC-------
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRL---LE----------M-NP------- 232 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~~~sl~~~l~~~~~~---~~----------~-~~------- 232 (370)
+|+|+ +|||+||||+|+.||..+..+ |++||+||+|+ ..+++..+|.+... .. . ..
T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEEe-cCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 67887 999999999999977777765 59999999999 78999999977520 00 0 00
Q ss_pred ----CCCcee---ecccCCeeEEecCCCCc---cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhH
Q 017486 233 ----EKRTII---PTEYLGVKLVSFGFSGQ---GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQV 302 (370)
Q Consensus 233 ----~~~~i~---~~~~~~l~vl~~g~~~~---~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~ 302 (370)
....+. -...++++++..|...+ +.... ...+++++++.+...+||+||+||-+|+.....-. .
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp----~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~--~ 153 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACP----MNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGT--I 153 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccch----HHHHHHHHHHHHhcccCcEEEEecccchhhhcccc--c
Confidence 001111 11235678887776532 22222 34456666666655779999999999987443333 4
Q ss_pred hCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 303 ~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
-.+|.+++|+.|+..++..++++.+..++.++..+++|+|+++..
T Consensus 154 ~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 154 EGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 457999999999999999999999999999999999999999965
No 52
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.80 E-value=6.9e-19 Score=148.91 Aligned_cols=110 Identities=35% Similarity=0.515 Sum_probs=95.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~ 254 (370)
+|+|+|+|||+||||++.++|..++++|++|+++|+|++++++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------ 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC------------------------------------
Confidence 58999999999999999999999999999999999999776542
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcC-C
Q 017486 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-K 333 (370)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~-~ 333 (370)
|||||||+||+.+.....+ +..+|.+++|+.++..+++++.++++.+.+. +
T Consensus 45 --------------------------yd~VIiD~p~~~~~~~~~~--l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~ 96 (139)
T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDF--FLAADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139)
T ss_pred --------------------------CCEEEEECCCCCCHHHHHH--HHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcC
Confidence 8999999999988766544 5567999999999999999999999888653 4
Q ss_pred CCeEEEEEcCCccCC
Q 017486 334 VPCIAVVENMCHFDA 348 (370)
Q Consensus 334 ~~~~gvV~N~v~~~~ 348 (370)
...+++|+||+....
T Consensus 97 ~~~~~lVvN~~~~~~ 111 (139)
T cd02038 97 VLNFRVVVNRAESPK 111 (139)
T ss_pred CCCEEEEEeCCCCHH
Confidence 556889999997643
No 53
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=99.80 E-value=2.4e-19 Score=143.05 Aligned_cols=89 Identities=30% Similarity=0.614 Sum_probs=83.4
Q ss_pred CCCcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeEE
Q 017486 71 VSTGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (370)
Q Consensus 71 ~~~~~~~~~v~~~L~~V~dPel~~div~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~V 150 (370)
.+...++++|+++|++|+|||+++|||+|||||++.+++.++.++|+|++|++|||..+.|..++++++..++++++++|
T Consensus 8 ~~~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V 87 (111)
T COG2151 8 EAIKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEV 87 (111)
T ss_pred chhhhhHHHHHHHhhcCCCcccceeeEeeccEEEEEEecCCceEEEEEecCCCCCCccHHHHHHHHHHHHhcCCcceEEE
Confidence 44677899999999999999999999999999999998722689999999999999999999999999999999999999
Q ss_pred EeecCCCCc
Q 017486 151 TMSAQPARP 159 (370)
Q Consensus 151 ~l~~~p~~~ 159 (370)
+++|+|+|.
T Consensus 88 ~l~~~p~Wt 96 (111)
T COG2151 88 ELTLSPPWT 96 (111)
T ss_pred EEEEcCCCc
Confidence 999999994
No 54
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.79 E-value=2.1e-18 Score=138.30 Aligned_cols=99 Identities=32% Similarity=0.504 Sum_probs=86.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~ 254 (370)
+|+|.|.|||+||||++.+||..++++|++|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~----------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence 489999999999999999999999999999999999987
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHH---HHHc
Q 017486 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR---MFSK 331 (370)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~---~l~~ 331 (370)
||+||||+||+.+...... +..+|.+++|+.++..+++.+.++++ ..++
T Consensus 40 --------------------------~d~viiD~p~~~~~~~~~~--l~~ad~viv~~~~~~~s~~~~~~~~~~~~~~~~ 91 (104)
T cd02042 40 --------------------------YDYIIIDTPPSLGLLTRNA--LAAADLVLIPVQPSPLDLDGLEKLLETLILEDR 91 (104)
T ss_pred --------------------------CCEEEEeCcCCCCHHHHHH--HHHCCEEEEeccCCHHHHHHHHHHHHHHHHHHh
Confidence 8999999999987655533 55679999999999999999999987 4433
Q ss_pred --CCCCeEEEEEc
Q 017486 332 --LKVPCIAVVEN 342 (370)
Q Consensus 332 --~~~~~~gvV~N 342 (370)
.+.+..|+|+|
T Consensus 92 ~~~~~~~~~vv~n 104 (104)
T cd02042 92 LNPDLDILGILPT 104 (104)
T ss_pred cCCCCceEEEEeC
Confidence 35567899987
No 55
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.76 E-value=8e-18 Score=151.36 Aligned_cols=147 Identities=22% Similarity=0.316 Sum_probs=103.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
|++|.|.|.|||+||||.+..||..|+++|.+|.+||+|+++|-..|.-..... . ....++.+....
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~--------~----~~~~~~~V~~~~- 67 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRP--------G----AWPDRIEVYEAD- 67 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhcccc--------C----CCCCCeeEEecc-
Confidence 569999999999999999999999999999999999999999766442111000 0 001122222100
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcC
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (370)
-...+++..+......|||||||+.++.+..... .+..+|.+|+++.+......++.++++++.+.
T Consensus 68 ------------e~~~l~~~~e~a~~~~~d~VlvDleG~as~~~~~--aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~ 133 (231)
T PF07015_consen 68 ------------ELTILEDAYEAAEASGFDFVLVDLEGGASELNDY--AIARSDLVLIPMQPSQLDADEAAKTFKWVRRL 133 (231)
T ss_pred ------------chhhHHHHHHHHHhcCCCEEEEeCCCCCchhHHH--HHHHCCEEEECCCCChHHHHHHHHHHHHHHHH
Confidence 0123555555444356999999999766644333 35567999999999999999988888777654
Q ss_pred ------CCCeEEEEEcCCccC
Q 017486 333 ------KVPCIAVVENMCHFD 347 (370)
Q Consensus 333 ------~~~~~gvV~N~v~~~ 347 (370)
++| ..|+++|++..
T Consensus 134 ~~~~~~~ip-~~Vl~Tr~~~~ 153 (231)
T PF07015_consen 134 EKAERRDIP-AAVLFTRVPAA 153 (231)
T ss_pred HHhhCCCCC-eeEEEecCCcc
Confidence 345 46999998753
No 56
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.74 E-value=3.6e-18 Score=146.91 Aligned_cols=141 Identities=27% Similarity=0.380 Sum_probs=100.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--c----ccc---------CCCCCcee
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L----LEM---------NPEKRTII 238 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~----~~~---------~~~~~~i~ 238 (370)
|+|+|+|.+||+||||+|.|||..+|+.|++|++||+|...+.+..+++.+.. + ... ....+.+.
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~ 80 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHIY 80 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHCE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHhe
Confidence 68999999999999999999999999999999999999999998888876653 1 111 11122333
Q ss_pred ecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcch
Q 017486 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (370)
Q Consensus 239 ~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s 318 (370)
+....++++++.+........+....+..+++.+. +.||+||||+|+......... .+..+|.+++|+.++..+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~li~~l~-----~~yd~IivD~~~~~~~~~~~~-~l~~~D~ii~v~~~~~~s 154 (157)
T PF13614_consen 81 SDAHDGLDLLPPPSSPEDLEELTPEDVEELIDALK-----EHYDYIIVDLPSSLSNPDTQA-VLELADKIILVVRPDVTS 154 (157)
T ss_dssp EESSTTEEEE--SSSSHHHHHHTSHHHHHHHHHHH-----HHSSEEEEEEESTTTHTHHHH-HHTTHSEEEEEEETTHHH
T ss_pred eccCCCeEEecCCCCCCchhhcCHHHHHHHHHHHH-----HcCCEEEEECcCCccHHHHHH-HHHHCCEEEEEECCCccc
Confidence 33347899998766655555555665555555554 589999999999887654421 244569999999999987
Q ss_pred HH
Q 017486 319 FI 320 (370)
Q Consensus 319 ~~ 320 (370)
.+
T Consensus 155 ~~ 156 (157)
T PF13614_consen 155 IR 156 (157)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 57
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.74 E-value=8.3e-19 Score=158.28 Aligned_cols=129 Identities=35% Similarity=0.493 Sum_probs=76.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~ 253 (370)
++|+|.|+|||+||||+|+|||.+|+++|+||.++|+|.++++++.+++......... ....+. +....++ .
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~---gi~Lp~--p~~~~L~--~- 72 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAWAQRD---GIELPV--PSHFFLP--P- 72 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHHHHHH---T--------EEE-SS--S-
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchhHHhc---CcccCC--ccceeec--c-
Confidence 5899999999999999999999999999999999999999999999886433221111 000111 1111111 1
Q ss_pred CccccccCCch-HHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecC
Q 017486 254 GQGRAIMRGPM-VSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP 314 (370)
Q Consensus 254 ~~~~~~~~~~~-~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p 314 (370)
....++.++. ....|++++..+. .++|||||||| |.++..... +...+|.++.+...
T Consensus 73 -~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~P-Gtd~~lsr~-Ahs~ADtLiTPlNd 130 (261)
T PF09140_consen 73 -DQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTP-GTDDRLSRV-AHSMADTLITPLND 130 (261)
T ss_dssp -HHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE--SSS-HHHHH-HHHT-SEEEEEEES
T ss_pred -cccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCC-CCCcHHHHH-HHHhCCEEEccCch
Confidence 2222333333 2357888888775 68999999999 665554443 34556877766543
No 58
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.70 E-value=6.1e-17 Score=154.18 Aligned_cols=166 Identities=25% Similarity=0.296 Sum_probs=105.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceee-cccCCeeEEecCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIP-TEYLGVKLVSFGF 252 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~-~~~~~l~vl~~g~ 252 (370)
|+|. ++|||||||||+|+.+|.++|++|+|||++..|+.. ++...|+.+-. ..... ...+|++.+-...
T Consensus 2 r~~~-~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~-~L~d~l~~~~~--------~~~~~v~~~~~L~a~eid~ 71 (305)
T PF02374_consen 2 RILF-FGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH-SLSDVLGQKLG--------GEPTKVEGVPNLSAMEIDP 71 (305)
T ss_dssp SEEE-EEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT-HHHHHHTS--B--------SS-EEETTCSSEEEEE--H
T ss_pred eEEE-EecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc-cHHHHhCCcCC--------CCCeEecCCCCceeeecCH
Confidence 3444 459999999999999999999999999999999965 67777765311 00000 0113444333111
Q ss_pred C------------------C---------ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH--------
Q 017486 253 S------------------G---------QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-------- 297 (370)
Q Consensus 253 ~------------------~---------~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l-------- 297 (370)
. . .....+.+-.-.-.+..+.+.+..++||+|||||||.-....+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~ 151 (305)
T PF02374_consen 72 EAELEEYWEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLR 151 (305)
T ss_dssp HHHHHHHHHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHH
Confidence 0 0 0000112222233444555444458999999999995221000
Q ss_pred ---H---------------H----------h-----------------hHh---CCCeEEEEecCCcchHHHHHHHHHHH
Q 017486 298 ---T---------------L----------C-----------------QVV---PLTAAVIVTTPQKLAFIDVAKGVRMF 329 (370)
Q Consensus 298 ---~---------------~----------~-----------------~~~---~~d~viiV~~p~~~s~~~~~~~~~~l 329 (370)
. . . ... ....+++|++|+..++.++++++..|
T Consensus 152 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L 231 (305)
T PF02374_consen 152 WWLDRLLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTEL 231 (305)
T ss_dssp HHHHHHHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHH
Confidence 0 0 0 000 23578999999999999999999999
Q ss_pred HcCCCCeEEEEEcCCccCCC
Q 017486 330 SKLKVPCIAVVENMCHFDAD 349 (370)
Q Consensus 330 ~~~~~~~~gvV~N~v~~~~~ 349 (370)
+..++++-++|+||+-+...
T Consensus 232 ~~~gi~v~~vVvNrvlp~~~ 251 (305)
T PF02374_consen 232 KLYGIPVDAVVVNRVLPEEE 251 (305)
T ss_dssp HHTT-EEEEEEEEEE-TTCS
T ss_pred HhcCCccCeEEEEccccccc
Confidence 99999999999999987653
No 59
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.69 E-value=8e-17 Score=121.19 Aligned_cols=78 Identities=56% Similarity=0.976 Sum_probs=64.0
Q ss_pred cEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC--CCccccccCCC
Q 017486 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPFGRG 359 (370)
Q Consensus 282 D~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~--~~~~~~~~g~~ 359 (370)
||+|||+|||++|.++++.+....+++++|++|+..+..+++|.++++++.+++++|+|.||.++.| +++.++.||+|
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~~~Cp~Cg~~~~iFg~G 81 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSYFVCPHCGERIYIFGKG 81 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-TTT--EEETTTTT
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccCCCCCCCeecCCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999988 68999999986
No 60
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.68 E-value=2.8e-17 Score=158.29 Aligned_cols=226 Identities=19% Similarity=0.205 Sum_probs=154.3
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...+|++|.+++++|+-..+..|| |...|+++|+...-+..+ ..+....+++.+.++++|..+.|.++.+
T Consensus 20 ~~i~E~~i~e~~reir~ALLeADVnl~vVk~fi~~ikera~g~ev-------~~~l~p~q~~iKiV~eELv~llG~~~~~ 92 (451)
T COG0541 20 GRITEKDVKEALREIRRALLEADVNLKVVKDFIKRIKERALGEEV-------PKGLTPGQQFIKIVYEELVKLLGGENSE 92 (451)
T ss_pred CcCCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhccccC-------CCCCCHHHHHHHHHHHHHHHHhCCCCcc
Confidence 567999999999999999999888 667888887654321222 2234448999999999999987765555
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~ 229 (370)
+.+...+|+ +|.++ |-.|.||||++..||.+|.+.|+||++|-||.++|..-.-+.
T Consensus 93 ~~l~~~~P~----------------vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~------- 148 (451)
T COG0541 93 LNLAKKPPT----------------VILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLK------- 148 (451)
T ss_pred cccCCCCCe----------------EEEEE-eccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHH-------
Confidence 554433333 77777 899999999999999999999999999999999987522111
Q ss_pred cCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--H----HHHHhhHh
Q 017486 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--I----QLTLCQVV 303 (370)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~----~l~~~~~~ 303 (370)
.-...-++++++.+...++. +..++.++..+...||+|||||+.-+.. . ...+....
T Consensus 149 --------~La~q~~v~~f~~~~~~~Pv---------~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~ 211 (451)
T COG0541 149 --------QLAEQVGVPFFGSGTEKDPV---------EIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVI 211 (451)
T ss_pred --------HHHHHcCCceecCCCCCCHH---------HHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhc
Confidence 00111255555542222221 2233444444447899999999985531 1 12233344
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCCC
Q 017486 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD 349 (370)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~~ 349 (370)
..|.+++|++...- +++.+..+.|.+ .+++.|||+.+.+.+..
T Consensus 212 ~P~E~llVvDam~G--QdA~~~A~aF~e-~l~itGvIlTKlDGdaR 254 (451)
T COG0541 212 NPDETLLVVDAMIG--QDAVNTAKAFNE-ALGITGVILTKLDGDAR 254 (451)
T ss_pred CCCeEEEEEecccc--hHHHHHHHHHhh-hcCCceEEEEcccCCCc
Confidence 56999999876554 445555555544 45778999999998763
No 61
>PRK10867 signal recognition particle protein; Provisional
Probab=99.63 E-value=4.8e-16 Score=153.64 Aligned_cols=225 Identities=18% Similarity=0.186 Sum_probs=137.8
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...++++|.+.|++++...+..|| +...+++.+.....+..+. .+....+.+.+.+++.|..+.+.....
T Consensus 20 ~~~~e~~i~~~l~ei~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~v~~el~~~l~~~~~~ 92 (433)
T PRK10867 20 GRLTEADIKEALREVRLALLEADVNLPVVKDFIARVKEKAVGQEVL-------KSLTPGQQVIKIVNDELVEILGGENSE 92 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhhcccc-------ccCCcHHHHHHHHHHHHHHHhCCCcce
Confidence 456889999999999999888887 4455666654322101111 111225678888888887665432222
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCCCCCCCcCCCCccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLL 228 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~~~sl~~~l~~~~~~~ 228 (370)
+++. .+.+.+|+++ |.+|+||||++++||.+|++. |++|++||+|.+++.....+..
T Consensus 93 ~~~~----------------~~~p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~----- 150 (433)
T PRK10867 93 LNLA----------------AKPPTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKT----- 150 (433)
T ss_pred eeec----------------CCCCEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHH-----
Confidence 2211 1123477777 899999999999999999998 9999999999998764221100
Q ss_pred ccCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHH----HHhhH
Q 017486 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL----TLCQV 302 (370)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~l----~~~~~ 302 (370)
.....++.+++.+...+ ......+.++..+...||+||||||+... +..+ .+...
T Consensus 151 ----------~a~~~gv~v~~~~~~~d---------p~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~ 211 (433)
T PRK10867 151 ----------LGEQIGVPVFPSGDGQD---------PVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAA 211 (433)
T ss_pred ----------HHhhcCCeEEecCCCCC---------HHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHh
Confidence 01123555555432111 11223333333333689999999998653 2211 11223
Q ss_pred hCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 303 ~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
...+.+++|+.+.. -+++.+..+.+.+ .+++.|+|+|+.+...
T Consensus 212 v~p~evllVlda~~--gq~av~~a~~F~~-~~~i~giIlTKlD~~~ 254 (433)
T PRK10867 212 VNPDEILLVVDAMT--GQDAVNTAKAFNE-ALGLTGVILTKLDGDA 254 (433)
T ss_pred hCCCeEEEEEeccc--HHHHHHHHHHHHh-hCCCCEEEEeCccCcc
Confidence 34588888988643 2444455555543 4567899999998654
No 62
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.63 E-value=4e-15 Score=141.63 Aligned_cols=162 Identities=26% Similarity=0.301 Sum_probs=111.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCc--ccccccCCCCCceeecccCCeeEEe--
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE--NRLLEMNPEKRTIIPTEYLGVKLVS-- 249 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~--~~~~~~~~~~~~i~~~~~~~l~vl~-- 249 (370)
+++.| +|||||||||+|+.+|..+|+.|+||++|..|+.+ ++...|+.+ ....... +|++.+.
T Consensus 3 riv~f-~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh-sL~d~f~~elg~~~~~I~-----------~nL~a~eiD 69 (322)
T COG0003 3 RIVFF-TGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH-SLGDVFDLELGHDPRKVG-----------PNLDALELD 69 (322)
T ss_pred EEEEE-ecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC-chHhhhccccCCchhhcC-----------CCCceeeec
Confidence 44544 59999999999999999999999999999999976 777777652 1110000 1222111
Q ss_pred ---------------------cC----CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-------
Q 017486 250 ---------------------FG----FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL------- 297 (370)
Q Consensus 250 ---------------------~g----~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l------- 297 (370)
.+ ...+....+.|-.-.-.+..+.+....++||+||+||||.-....+
T Consensus 70 ~~~~l~ey~~~v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~ 149 (322)
T COG0003 70 PEKALEEYWDEVKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVL 149 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHH
Confidence 11 0111122344444455677777777668899999999994211000
Q ss_pred ----H------HhhHh----------------------------------------CCCeEEEEecCCcchHHHHHHHHH
Q 017486 298 ----T------LCQVV----------------------------------------PLTAAVIVTTPQKLAFIDVAKGVR 327 (370)
Q Consensus 298 ----~------~~~~~----------------------------------------~~d~viiV~~p~~~s~~~~~~~~~ 327 (370)
. ...+. .-..+.+|..|+..++.+..++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~ 229 (322)
T COG0003 150 GWYLEKLFKPRRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVE 229 (322)
T ss_pred HHHHHhhhhhHHHHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHH
Confidence 0 00000 135678899999999999999999
Q ss_pred HHHcCCCCeEEEEEcCCccCC
Q 017486 328 MFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 328 ~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.+...++++-++++|++.++.
T Consensus 230 ~l~~~~i~v~~vi~n~~~p~~ 250 (322)
T COG0003 230 RLSLYGIPVDAVIVNKILPDE 250 (322)
T ss_pred HHHHcCCchheeeeecccccc
Confidence 999999999999999998865
No 63
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.62 E-value=3.3e-15 Score=136.35 Aligned_cols=170 Identities=19% Similarity=0.243 Sum_probs=108.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--ccc----c----CCCCCceeecccC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLE----M----NPEKRTIIPTEYL 243 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~~~----~----~~~~~~i~~~~~~ 243 (370)
|.|+|+ +|||.||||++.||+.+||++|+||+.|-|||...|...+++-... +.+ . ....+.+......
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~~ 79 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGFK 79 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEGG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEeccC
Confidence 579999 9999999999999999999999999999999999888776654322 111 0 1112344555677
Q ss_pred CeeEEecCCCCccccccCCchHHHHHHHHHHhc-CCCCCcEEEEcCCCCC--ChHHHHHhhHhCCCeEEEEecCCcchHH
Q 017486 244 GVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTT-EWGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAFI 320 (370)
Q Consensus 244 ~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~yD~VIIDtpp~~--~~~~l~~~~~~~~d~viiV~~p~~~s~~ 320 (370)
|+.++-.|-+....-. .+......++.+-+.- ...+||||++|.-... +-..+.+.. -.++.+++|+..+.+++.
T Consensus 80 gi~CvEsGGPePGvGC-aGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir~-g~a~evyIVtSge~msly 157 (273)
T PF00142_consen 80 GILCVESGGPEPGVGC-AGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIRE-GYAQEVYIVTSGEFMSLY 157 (273)
T ss_dssp GEEEEE---SCTTSSB-HHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHHT-TS-SEEEEEEBSSHHHHH
T ss_pred CceeeccCCCcccccc-cccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehhhhh-ccCCEEEEEecCcHHHHH
Confidence 9999987755332211 1111222233222111 1246999999986522 222333322 235999999999999999
Q ss_pred HHHHHHHHHHcC----CCCeEEEEEcCCcc
Q 017486 321 DVAKGVRMFSKL----KVPCIAVVENMCHF 346 (370)
Q Consensus 321 ~~~~~~~~l~~~----~~~~~gvV~N~v~~ 346 (370)
.+.++.+.+++. +.++.|+|.|..+.
T Consensus 158 AANNI~~~i~~~~~~g~~~l~GiI~N~r~~ 187 (273)
T PF00142_consen 158 AANNICKAIKNFADRGGARLGGIICNSRNV 187 (273)
T ss_dssp HHHHHHHHHHHHCTTSS-EEEEEEEE-SSS
T ss_pred HHHHHHHHHHHHhccCCCceEEEEecCCCC
Confidence 998888777754 45789999996554
No 64
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.61 E-value=1.4e-14 Score=128.64 Aligned_cols=173 Identities=26% Similarity=0.252 Sum_probs=119.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--cc--------ccCCCCCceeeccc
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL--------EMNPEKRTIIPTEY 242 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~~--------~~~~~~~~i~~~~~ 242 (370)
++.|+|+ +|||.||||++.|+|.+||..|+||++|-|||...|...++|-... +. ......+.++...+
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf 79 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGF 79 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheeccC
Confidence 4689999 9999999999999999999999999999999999888888773211 11 11233456777788
Q ss_pred CCeeEEecCCCCccccccCCchHHHHHHHHHHhcC-CCCCcEEEEcCCCCC--ChHHHHHhhHhCCCeEEEEecCCcchH
Q 017486 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGT--GDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 243 ~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~VIIDtpp~~--~~~~l~~~~~~~~d~viiV~~p~~~s~ 319 (370)
.|++++-.|-+....- -.+......++-|-+.-. .+..|+||+|..... +-..+.+.. --+|.+.+|++.+.+++
T Consensus 80 ~Gv~CVEsGGPepGvG-CAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiRe-g~AdeiyIVtSge~Mal 157 (278)
T COG1348 80 GGVKCVESGGPEPGVG-CAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIRE-GYADEIYIVTSGEMMAL 157 (278)
T ss_pred CceEEeecCCCCCCCC-cccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeeehhc-ccCcEEEEEecCchHHH
Confidence 8999998775543321 112223333333322211 134699999997632 222222221 23699999999999999
Q ss_pred HHHHHHHHHHHc----CCCCeEEEEEcCCccCC
Q 017486 320 IDVAKGVRMFSK----LKVPCIAVVENMCHFDA 348 (370)
Q Consensus 320 ~~~~~~~~~l~~----~~~~~~gvV~N~v~~~~ 348 (370)
..+.++.+-+++ .++++-|+|.|.-..+.
T Consensus 158 YAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~ 190 (278)
T COG1348 158 YAANNIAKGIRKYAKTGGVRLGGIICNSRSVDR 190 (278)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeEEecCCCccc
Confidence 988877766654 46778999999877543
No 65
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.58 E-value=2.9e-15 Score=148.06 Aligned_cols=225 Identities=19% Similarity=0.220 Sum_probs=133.3
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...++++|.+.|++++...+..|| +...+++.++-...+..+ . .+....+.+.+.+.+.|..+.+.....
T Consensus 19 ~~~~e~~i~~~l~ei~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~------~-~~~~~~~~~~~~v~~eL~~~l~~~~~~ 91 (428)
T TIGR00959 19 GTITEKNIKEALREIRLALLEADVNLQVVKDFIKKVKEKALGQEV------L-KSLSPGQQFIKIVHEELVAILGGENAS 91 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhccccc------c-ccCCcHHHHHHHHHHHHHHHhCCCCcc
Confidence 457999999999999999998888 335566665322100111 1 112226778888888887664432111
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCCCCCCCcCCCCccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENRLL 228 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~~~sl~~~l~~~~~~~ 228 (370)
+.+ ....+.+.+++|.+|+||||++++||.++. +.|++|++||+|.+++.....+..
T Consensus 92 ~~~-----------------~~~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~----- 149 (428)
T TIGR00959 92 LNL-----------------AKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKV----- 149 (428)
T ss_pred ccc-----------------CCCCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHH-----
Confidence 111 111234555559999999999999999987 689999999999998764221100
Q ss_pred ccCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHH----HHhhH
Q 017486 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL----TLCQV 302 (370)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~l----~~~~~ 302 (370)
.....++.++..+....+ .....+.++....+.||+||||||+... +..+ .+...
T Consensus 150 ----------~a~~~gvp~~~~~~~~~P---------~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~ 210 (428)
T TIGR00959 150 ----------LGQQVGVPVFALGKGQSP---------VEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEI 210 (428)
T ss_pred ----------HHHhcCCceEecCCCCCH---------HHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHh
Confidence 001123444432221111 1122233332223789999999998553 2211 11123
Q ss_pred hCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 303 ~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
...|.+++|+.+.. -+++.+..+.+. ..+++.|+|+|+.+...
T Consensus 211 ~~p~e~lLVvda~t--gq~~~~~a~~f~-~~v~i~giIlTKlD~~~ 253 (428)
T TIGR00959 211 LNPDEILLVVDAMT--GQDAVNTAKTFN-ERLGLTGVVLTKLDGDA 253 (428)
T ss_pred hCCceEEEEEeccc--hHHHHHHHHHHH-hhCCCCEEEEeCccCcc
Confidence 34688999988753 345555555554 23466899999998654
No 66
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.57 E-value=3.7e-15 Score=146.56 Aligned_cols=226 Identities=12% Similarity=0.106 Sum_probs=136.1
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...++++|.+.|++|+...++.|| +...+++.+.....+. . +. .+....+.+.+.+.+.|..+.+....
T Consensus 20 ~~l~e~~i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~~~~--~----~~-~~~~~~~~v~~~v~~~L~~~l~~~~~- 91 (429)
T TIGR01425 20 TVIDEEVLNAMLKEICTALLESDVNIKLVRQLRENIKKAINLE--E----MA-SGLNKRKMIQHAVFKELCNLVDPGVE- 91 (429)
T ss_pred CccCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHhcc--c----cc-cccCHHHHHHHHHHHHHHHHhCCCCc-
Confidence 567999999999999999988888 4466666654322101 1 11 12233678888889988875432211
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~ 229 (370)
+|.. ..+.+++|+++ |.+|+||||++++||.++.+.|+||++|++|+++++....+...
T Consensus 92 -------~~~~--------~~~~~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~----- 150 (429)
T TIGR01425 92 -------AFTP--------KKGKQNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQN----- 150 (429)
T ss_pred -------cccc--------cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHH-----
Confidence 1100 01224588888 89999999999999999999999999999999986542211100
Q ss_pred cCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-H-H----HHhhHh
Q 017486 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-Q-L----TLCQVV 303 (370)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~-l----~~~~~~ 303 (370)
....++.+.......+.. ......++.+ +...||+||||||+..... . + ......
T Consensus 151 ----------a~~~~vp~~~~~~~~dp~-----~i~~~~l~~~----~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~ 211 (429)
T TIGR01425 151 ----------ATKARIPFYGSYTESDPV-----KIASEGVEKF----KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAI 211 (429)
T ss_pred ----------hhccCCeEEeecCCCCHH-----HHHHHHHHHH----HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhc
Confidence 011133333211111110 0112233333 2368999999999865321 1 1 111123
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCCC
Q 017486 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD 349 (370)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~~ 349 (370)
..|.+++|+.+..- ++.....+.|.+ .+++.|+|+++.+-.+.
T Consensus 212 ~p~e~lLVlda~~G--q~a~~~a~~F~~-~~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 212 QPDNIIFVMDGSIG--QAAEAQAKAFKD-SVDVGSVIITKLDGHAK 254 (429)
T ss_pred CCcEEEEEeccccC--hhHHHHHHHHHh-ccCCcEEEEECccCCCC
Confidence 45788999886542 223334455543 24568999999997653
No 67
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=99.56 E-value=4.4e-14 Score=122.69 Aligned_cols=88 Identities=25% Similarity=0.464 Sum_probs=81.4
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEec---CCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINE---ALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~div~lGlV~~v~v~~---~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
.+.++++|+++|+.|+||+++.||+++|+|+++.+++ +++++.|.|++|.++|++.+.+.++++++|..++++++++
T Consensus 71 ~~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~ 150 (174)
T TIGR03406 71 GEDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVE 150 (174)
T ss_pred ccccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEE
Confidence 4567899999999999999999999999999999986 2237999999999999999999999999999999999999
Q ss_pred EEeecCCCCch
Q 017486 150 VTMSAQPARPI 160 (370)
Q Consensus 150 V~l~~~p~~~~ 160 (370)
|++.++|+|..
T Consensus 151 V~l~~dp~W~~ 161 (174)
T TIGR03406 151 VELVFDPPWSR 161 (174)
T ss_pred EEEEecCCCCh
Confidence 99999999943
No 68
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.54 E-value=1.4e-13 Score=131.22 Aligned_cols=171 Identities=24% Similarity=0.297 Sum_probs=126.8
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCCCCCCcCCCCcccc--cc----cCCCC----Cceee
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRL--LE----MNPEK----RTIIP 239 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~~~sl~~~l~~~~~~--~~----~~~~~----~~i~~ 239 (370)
...++++|.+.|||+|-||+|.|+|+.++. .++.|+++|+|.+.++...+|+.+... .+ .+..+ +...-
T Consensus 102 ~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~ 181 (366)
T COG4963 102 QQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLT 181 (366)
T ss_pred hhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHh
Confidence 346899999999999999999999999985 589999999999999888888765431 11 01111 11222
Q ss_pred cccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchH
Q 017486 240 TEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 240 ~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~ 319 (370)
....++++++.........-+. ...+..+++.+. ..||+||+|.|-.+.++...+ +..+|.+++|++++..++
T Consensus 182 ~~~~~l~ll~a~~~~~~~~d~~----~~~~~~Ll~~~~-~~~~~vV~Dlp~~~~~~t~~v--L~~Sd~iviv~e~sl~sl 254 (366)
T COG4963 182 RLASGLKLLAAPTELAKNYDLK----TGAVERLLDLLR-GSFDFVVVDLPNIWTDWTRQV--LSGSDEIVIVAEPSLASL 254 (366)
T ss_pred ccCCCceeecCCcchhhhcccc----cchHHHHHHHhh-ccCCeEEEcCCCccchHHHHH--HhcCCeEEEEecccHHHH
Confidence 3356888888665433222222 223555555554 789999999997777776665 667899999999999999
Q ss_pred HHHHHHHHHHHcCCC--CeEEEEEcCCccCC
Q 017486 320 IDVAKGVRMFSKLKV--PCIAVVENMCHFDA 348 (370)
Q Consensus 320 ~~~~~~~~~l~~~~~--~~~gvV~N~v~~~~ 348 (370)
+.++++++.+++.+. +....|+|++....
T Consensus 255 R~ak~lld~l~~~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 255 RNAKELLDELKRLRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred HHHHHHHHHHHHhCCCCCCceEEeeecCCCC
Confidence 999999999998743 45778999988643
No 69
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.54 E-value=2.1e-13 Score=116.54 Aligned_cols=144 Identities=21% Similarity=0.274 Sum_probs=86.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCC-CcCCCCcccccccCCCCCceeecccCCeeE--EecCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL-PTMVSPENRLLEMNPEKRTIIPTEYLGVKL--VSFGF 252 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl-~~~l~~~~~~~~~~~~~~~i~~~~~~~l~v--l~~g~ 252 (370)
|.+. +++|+||||++.+++..+.+.|.||+++|+|++.+.. ..+++....+ .+.. ..+++.+ ++.+.
T Consensus 2 i~~~-G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~ 71 (148)
T cd03114 2 IGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRM------ERHA---SDPGVFIRSLATRG 71 (148)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcccchhcCceEh------hhee---cCCCceEEEcCCcC
Confidence 4455 9999999999999999999999999999999865432 2222211110 0111 0134433 33221
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcC
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (370)
..... .....+.++ .++...|||||||| +|.......+ ...+|.+++|++|+...-..+.+. .+++..
T Consensus 72 ~~~~~----~~~~~~~~~----~~~~~~~D~iiIDt-aG~~~~~~~~--~~~Ad~~ivv~tpe~~D~y~~~k~-~~~~~~ 139 (148)
T cd03114 72 FLGGL----SRATPEVIR----VLDAAGFDVIIVET-VGVGQSEVDI--ASMADTTVVVMAPGAGDDIQAIKA-GIMEIA 139 (148)
T ss_pred ccccc----chhHHHHHH----HHHhcCCCEEEEEC-CccChhhhhH--HHhCCEEEEEECCCchhHHHHhhh-hHhhhc
Confidence 11100 011222232 22225899999999 6666544443 556799999999996555444444 555555
Q ss_pred CCCeEEEEEcCCc
Q 017486 333 KVPCIAVVENMCH 345 (370)
Q Consensus 333 ~~~~~gvV~N~v~ 345 (370)
+. +++|+++
T Consensus 140 ~~----~~~~k~~ 148 (148)
T cd03114 140 DI----VVVNKAD 148 (148)
T ss_pred CE----EEEeCCC
Confidence 44 7889864
No 70
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.52 E-value=2e-14 Score=142.55 Aligned_cols=222 Identities=15% Similarity=0.144 Sum_probs=135.4
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...++++|.+.|++|+...+..|| +...+++.+..... + -+ ...+....+.+.+.+.+.|..+.+.....
T Consensus 16 ~~l~e~~i~~~l~ei~~aLl~adV~~~~~~~~~~~v~~~~~-~-~~-----~~~~~~~~~~~~~~v~~~L~~~l~~~~~~ 88 (437)
T PRK00771 16 SRIDEKTVKEVVKDIQRALLQADVNVKLVKELSKSIKERAL-E-EE-----PPKGLTPREHVIKIVYEELVKLLGEETEP 88 (437)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHh-c-cc-----ccccCCcHHHHHHHHHHHHHHHhCCCccc
Confidence 467999999999999999998888 33455555532211 0 01 11234446777788888887654332211
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~ 229 (370)
.. ....+.+|+++ |.+|+||||++++||.+|.+.|++|++||+|.+++.....+.. +
T Consensus 89 ~~-----------------~~~~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~---l-- 145 (437)
T PRK00771 89 LV-----------------LPLKPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQ---L-- 145 (437)
T ss_pred cc-----------------cCCCCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHH---H--
Confidence 10 01124577777 8999999999999999999999999999999988643211100 0
Q ss_pred cCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--HHH----HHhhHh
Q 017486 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQL----TLCQVV 303 (370)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~l----~~~~~~ 303 (370)
....++.+..... .......+.+.++.. ..+|+||||||+.... ..+ .+....
T Consensus 146 ----------a~~~gvp~~~~~~---------~~d~~~i~~~al~~~--~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~ 204 (437)
T PRK00771 146 ----------AEKIGVPFYGDPD---------NKDAVEIAKEGLEKF--KKADVIIVDTAGRHALEEDLIEEMKEIKEAV 204 (437)
T ss_pred ----------HHHcCCcEEecCC---------ccCHHHHHHHHHHHh--hcCCEEEEECCCcccchHHHHHHHHHHHHHh
Confidence 0001222222110 111223344444443 4579999999985542 111 223344
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..|.+++|+.+... .++.+..+.+.+ .+++.|+|+|+.+...
T Consensus 205 ~pdevlLVvda~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 205 KPDEVLLVIDATIG--QQAKNQAKAFHE-AVGIGGIIITKLDGTA 246 (437)
T ss_pred cccceeEEEecccc--HHHHHHHHHHHh-cCCCCEEEEecccCCC
Confidence 57999999987664 233333444433 3567899999999765
No 71
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.51 E-value=1.6e-13 Score=128.62 Aligned_cols=149 Identities=16% Similarity=0.167 Sum_probs=93.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g 251 (370)
.+++|+|+ +++|+||||++++||..+++.|++|++||+|+++..... .+ -......++.+++.+
T Consensus 71 ~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~------ql---------~~~~~~~~i~~~~~~ 134 (272)
T TIGR00064 71 KPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIE------QL---------EEWAKRLGVDVIKQK 134 (272)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHH------HH---------HHHHHhCCeEEEeCC
Confidence 35799999 899999999999999999999999999999986533100 00 000011234444433
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHHH-----HhhHhC------CCeEEEEecCCcchH
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQLT-----LCQVVP------LTAAVIVTTPQKLAF 319 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~l~-----~~~~~~------~d~viiV~~p~~~s~ 319 (370)
...+.. ......++... .+.||+||||||+... +..+. +..... .|.+++|+.+. ...
T Consensus 135 ~~~dp~-----~~~~~~l~~~~----~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~~~ 204 (272)
T TIGR00064 135 EGADPA-----AVAFDAIQKAK----ARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-TGQ 204 (272)
T ss_pred CCCCHH-----HHHHHHHHHHH----HCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-CCH
Confidence 221110 01112233322 2789999999998654 22211 111222 68999999986 566
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..+.++....+..+ +.|+|+|+++...
T Consensus 205 ~~~~~~~~f~~~~~--~~g~IlTKlDe~~ 231 (272)
T TIGR00064 205 NALEQAKVFNEAVG--LTGIILTKLDGTA 231 (272)
T ss_pred HHHHHHHHHHhhCC--CCEEEEEccCCCC
Confidence 67776655555454 5799999998754
No 72
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=99.50 E-value=8.3e-14 Score=104.16 Aligned_cols=72 Identities=43% Similarity=0.730 Sum_probs=65.0
Q ss_pred HHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeEE
Q 017486 77 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNV 150 (370)
Q Consensus 77 ~~~v~~~L~~V~dPel~~div~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~V 150 (370)
+++|+++|++|+||+++.|++++|+|+++.+++ +++.|.|++++++||..+.+.++++++|.+++|+.+++|
T Consensus 1 k~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~--~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 1 KQAVRDALKQVKDPELGKDIVELGMVRDISIEG--GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHHTT-BETTTSSBTTTTTSEEEEEECT--CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CHHHHHHHhCCCCCCCCCCHHHcCCeeEEEEEC--CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 588999999999999999999999999999998 899999999999999999999999999999999888764
No 73
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.42 E-value=3.5e-12 Score=111.68 Aligned_cols=146 Identities=21% Similarity=0.204 Sum_probs=90.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~ 254 (370)
++.++ |++|+||||++.++|..+++.|++|++||+|++++.....+... ....++.+++.....
T Consensus 2 ~~~~~-G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~---------------~~~~~~~~~~~~~~~ 65 (173)
T cd03115 2 VILLV-GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVL---------------GEQVGVPVFEEGEGK 65 (173)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHh---------------cccCCeEEEecCCCC
Confidence 34555 99999999999999999999999999999999876543322110 011245555532211
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--HHH-HH---hhHhCCCeEEEEecCCcchHHHHHHHHHH
Q 017486 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQL-TL---CQVVPLTAAVIVTTPQKLAFIDVAKGVRM 328 (370)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~l-~~---~~~~~~d~viiV~~p~~~s~~~~~~~~~~ 328 (370)
.....+.+.+....+..||+||||+|+.... ..+ .+ ......|.+++|+.+. ..........+.
T Consensus 66 ---------~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~-~~~~~~~~~~~~ 135 (173)
T cd03115 66 ---------DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAM-TGQDAVNQAKAF 135 (173)
T ss_pred ---------CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECC-CChHHHHHHHHH
Confidence 1122222333222237899999999986531 111 11 1112368899999884 344445444444
Q ss_pred HHcCCCCeEEEEEcCCccCC
Q 017486 329 FSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 329 l~~~~~~~~gvV~N~v~~~~ 348 (370)
.+..+ +.++|+||++...
T Consensus 136 ~~~~~--~~~viltk~D~~~ 153 (173)
T cd03115 136 NEALG--ITGVILTKLDGDA 153 (173)
T ss_pred HhhCC--CCEEEEECCcCCC
Confidence 45555 5899999998644
No 74
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.37 E-value=4.8e-12 Score=110.03 Aligned_cols=155 Identities=18% Similarity=0.192 Sum_probs=89.5
Q ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--c-cccCCCCCceeecccCCeeEEecCCCC
Q 017486 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L-LEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (370)
Q Consensus 178 v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~-~~~~~~~~~i~~~~~~~l~vl~~g~~~ 254 (370)
|++..+|+||||++.+||.+|+++|+||.++.--..+.. +.+.+ + .........+ .....+ ....+...
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~-----~~d~d~~~i~~~~~~~~~~--~~~~~~-~~~~~~~p 73 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIE-----KTNSDALLLQNISGTALDW--DEVNPY-AFALPLSP 73 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCC-----CCchHHHHHHHHcCCCCch--hccCCe-eeCCCCCh
Confidence 678999999999999999999999999999743322210 00000 0 0000000000 000000 00000000
Q ss_pred ccccccCC-chHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh------HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHH
Q 017486 255 QGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVR 327 (370)
Q Consensus 255 ~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~------~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~ 327 (370)
.......+ +.....+.+.++.+. ++||+||||+|++... ....+.... .+.+++|+.+...++.++....+
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~-~~~vilV~~~~~~~~~~~~~~~~ 151 (166)
T TIGR00347 74 HIAADQEGRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLL-QLPVILVVRVKLGTINHTLLTVE 151 (166)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHH
Confidence 00011111 111122344444443 7899999999986431 111122222 36789999999999999999999
Q ss_pred HHHcCCCCeEEEEEc
Q 017486 328 MFSKLKVPCIAVVEN 342 (370)
Q Consensus 328 ~l~~~~~~~~gvV~N 342 (370)
.+++.+.++.|+|+|
T Consensus 152 ~l~~~~~~i~gvv~N 166 (166)
T TIGR00347 152 HARQTGLTLAGVILN 166 (166)
T ss_pred HHHHCCCCeEEEEeC
Confidence 999999999999998
No 75
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.36 E-value=1.8e-11 Score=117.14 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=91.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
+++|+++ |.+|+||||++++||..++..|++|+++|+|+++......+ .......++.+++...
T Consensus 114 ~~vi~lv-GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql---------------~~~a~~~~i~~~~~~~ 177 (318)
T PRK10416 114 PFVILVV-GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQL---------------QVWGERVGVPVIAQKE 177 (318)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHH---------------HHHHHHcCceEEEeCC
Confidence 4689998 79999999999999999999999999999999764311000 0011122455555322
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHH----H-HHhhH------hCCCeEEEEecCCcchHH
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQ----L-TLCQV------VPLTAAVIVTTPQKLAFI 320 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~----l-~~~~~------~~~d~viiV~~p~~~s~~ 320 (370)
..+. ....++.+.... .+.||+|||||||... +.. + .+... ...+.+++|+.+. ....
T Consensus 178 ~~dp--------a~~v~~~l~~~~-~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~-~g~~ 247 (318)
T PRK10416 178 GADP--------ASVAFDAIQAAK-ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT-TGQN 247 (318)
T ss_pred CCCH--------HHHHHHHHHHHH-hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC-CChH
Confidence 1111 111222222222 3789999999998653 111 1 11111 1357888888888 4556
Q ss_pred HHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 321 DVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.+.++....+.. ++.|+|+|+.+...
T Consensus 248 ~~~~a~~f~~~~--~~~giIlTKlD~t~ 273 (318)
T PRK10416 248 ALSQAKAFHEAV--GLTGIILTKLDGTA 273 (318)
T ss_pred HHHHHHHHHhhC--CCCEEEEECCCCCC
Confidence 666654444433 56799999999654
No 76
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.35 E-value=3.2e-12 Score=104.54 Aligned_cols=111 Identities=31% Similarity=0.357 Sum_probs=69.5
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCC--
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS-- 253 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~-- 253 (370)
|+++ +|||+||||++.++|.+++++|++|++||+|+ +++...++.... ....++-.|..
T Consensus 2 i~~~-GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~----------------~~~~~i~~g~~~~ 62 (116)
T cd02034 2 IAIT-GKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVG----------------EIKLLLVMGMGRP 62 (116)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccC----------------CceEEEEeccccc
Confidence 4444 89999999999999999999999999999999 333332221110 01111111111
Q ss_pred -CccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEE
Q 017486 254 -GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIV 311 (370)
Q Consensus 254 -~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV 311 (370)
........+ ..+++++..+....|||+|+||++|+......+ ...+|.+++|
T Consensus 63 ~~~g~~~~~n----~~~~~~l~~~~~~~~~~vivDt~ag~e~~~~~~--~~~~d~vv~v 115 (116)
T cd02034 63 GGEGCYCPEN----ALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGT--AEGVDLLVVV 115 (116)
T ss_pred CCCCCEehhh----HHHHHHHHHeEccCCCEEEEecHHHHHHHHhhc--cccCCEEEEe
Confidence 111111111 256666666544889999999999987554443 3346877776
No 77
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.35 E-value=1.5e-11 Score=96.05 Aligned_cols=93 Identities=41% Similarity=0.587 Sum_probs=74.7
Q ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCCccc
Q 017486 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 257 (370)
Q Consensus 178 v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~~~~ 257 (370)
+.++++|+||||++.+||..|++.|++|+++|
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~------------------------------------------------ 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAKRGKRVLLID------------------------------------------------ 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC------------------------------------------------
Confidence 34477799999999999999999999999999
Q ss_pred cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-HHhhHhCCCeEEEEecCCcchHHHHHHHHH---HHHcCC
Q 017486 258 AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVR---MFSKLK 333 (370)
Q Consensus 258 ~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l-~~~~~~~~d~viiV~~p~~~s~~~~~~~~~---~l~~~~ 333 (370)
|+||+|++++...... .......+|.+++|+.++..++....+..+ .....+
T Consensus 35 ------------------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (99)
T cd01983 35 ------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEG 90 (99)
T ss_pred ------------------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhhccC
Confidence 9999999998875541 012244569999999999999999888853 333446
Q ss_pred CCeEEEEEc
Q 017486 334 VPCIAVVEN 342 (370)
Q Consensus 334 ~~~~gvV~N 342 (370)
....++|+|
T Consensus 91 ~~~~~vv~N 99 (99)
T cd01983 91 LRPVGVVVN 99 (99)
T ss_pred CceEEEEeC
Confidence 667888887
No 78
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.33 E-value=3.2e-11 Score=110.27 Aligned_cols=48 Identities=31% Similarity=0.378 Sum_probs=44.3
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCc
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 219 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~ 219 (370)
|++++.+.++|||+||||+|++||.++++.|++|++||+|++++++..
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~ 48 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEG 48 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhh
Confidence 568999999999999999999999999999999999999999876543
No 79
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.31 E-value=6.7e-12 Score=112.74 Aligned_cols=174 Identities=19% Similarity=0.183 Sum_probs=107.6
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc----c-ccccCCCC-CceeecccCC
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN----R-LLEMNPEK-RTIIPTEYLG 244 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~----~-~~~~~~~~-~~i~~~~~~~ 244 (370)
+....-.|++|||||||||.++.||..+|.-+.+||+|..||.. +++..|+..- . +.+..... -.|.|. .+
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH-NlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~--~e 92 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH-NLSDAFSQKFTKTPTKVEGFENLFAMEIDPN--VE 92 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc-chHHHHHHHhcCCCccccChhhheeeecCCc--hh
Confidence 33445556779999999999999999999999999999999976 5665544221 1 10000000 000000 00
Q ss_pred eeEEe------------cC--CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH-HHHhhHh------
Q 017486 245 VKLVS------------FG--FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLCQVV------ 303 (370)
Q Consensus 245 l~vl~------------~g--~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-l~~~~~~------ 303 (370)
+.-++ .| ...+-...+.+-+..-.+.+++..++.-+||.||+||+|.-.... +.+...+
T Consensus 93 ~~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~lgK 172 (323)
T KOG2825|consen 93 MGDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGLGK 172 (323)
T ss_pred hhhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchHHHHHHHH
Confidence 00011 00 000000112333333345556666666789999999999422110 0000000
Q ss_pred --------------------------------------------------CCCeEEEEecCCcchHHHHHHHHHHHHcCC
Q 017486 304 --------------------------------------------------PLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (370)
Q Consensus 304 --------------------------------------------------~~d~viiV~~p~~~s~~~~~~~~~~l~~~~ 333 (370)
.+...++|+-++-.++.+++|+++.|.+.+
T Consensus 173 l~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~~ 252 (323)
T KOG2825|consen 173 LLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQG 252 (323)
T ss_pred HHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhcC
Confidence 367789999999999999999999999999
Q ss_pred CCeEEEEEcCCccC
Q 017486 334 VPCIAVVENMCHFD 347 (370)
Q Consensus 334 ~~~~gvV~N~v~~~ 347 (370)
++.-.+|+|+.-+.
T Consensus 253 idthnIIVNQLL~~ 266 (323)
T KOG2825|consen 253 IDTHNIIVNQLLFP 266 (323)
T ss_pred CcccceeeeeccCC
Confidence 99999999997653
No 80
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=99.28 E-value=2.9e-11 Score=96.11 Aligned_cols=82 Identities=27% Similarity=0.584 Sum_probs=76.9
Q ss_pred HHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeEEEeecCC
Q 017486 77 ENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQP 156 (370)
Q Consensus 77 ~~~v~~~L~~V~dPel~~div~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~V~l~~~p 156 (370)
+++|.++|++|.||+++.+++++|+|+++.++++ +.+.|.++++.++||..+.+.+.+++++..++|++++++++...+
T Consensus 3 ~~~I~~~L~~v~dP~l~~~lv~~g~V~~i~v~~~-~~v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~~~~ 81 (99)
T TIGR02945 3 KDAVIEALKTVYDPEIPVNIYELGLIYDIDVDDD-GHVDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELVWDP 81 (99)
T ss_pred HHHHHHHHcCCCCCCCCCCeecCCCeeEEEECCC-CeEEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEEeeC
Confidence 5789999999999999999999999999999842 589999999999999999999999999999999999999999999
Q ss_pred CCc
Q 017486 157 ARP 159 (370)
Q Consensus 157 ~~~ 159 (370)
+|.
T Consensus 82 ~~~ 84 (99)
T TIGR02945 82 PWT 84 (99)
T ss_pred CCC
Confidence 984
No 81
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.26 E-value=2.4e-11 Score=102.77 Aligned_cols=71 Identities=24% Similarity=0.477 Sum_probs=66.9
Q ss_pred CCCCCCC-CCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeEEEeecCCCCch
Q 017486 87 IIDPDFG-TDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSAQPARPI 160 (370)
Q Consensus 87 V~dPel~-~div~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~V~l~~~p~~~~ 160 (370)
|.|||++ .||+++|+|++|.+++ +.+.|.|++|.++||..+.|.++++++|.+. |+++++|++.+.|+|..
T Consensus 1 v~DPEi~~~sIvdLG~Vr~V~v~g--d~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p~Wt~ 72 (146)
T TIGR02159 1 VPDPEIPVVSVTDLGMVREVDVDG--GGVVVKFTPTYSGCPALEVIRQDIRDAVRAL-GVEVVEVSTSLDPPWTT 72 (146)
T ss_pred CcCCCCCCCCchhcCCeeEEEEEC--CEEEEEEEeCCCCCchHHHHHHHHHHHHHhc-CCCeEEEeEeeCCCCCh
Confidence 7899999 8999999999999988 6899999999999999999999999999986 89999999999999943
No 82
>PRK13768 GTPase; Provisional
Probab=99.24 E-value=4.7e-11 Score=111.06 Aligned_cols=45 Identities=29% Similarity=0.256 Sum_probs=39.0
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl 217 (370)
|+++|.|. ++||+||||++.+++.+++++|++|++||+|++...+
T Consensus 1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~ 45 (253)
T PRK13768 1 MMYIVFFL-GTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYL 45 (253)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccC
Confidence 45566666 8899999999999999999999999999999976554
No 83
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.13 E-value=1.1e-09 Score=106.28 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=91.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
+++|+++ |.+|+||||+++.||..+..+|++|++|++|.++......+ . ......++.++...
T Consensus 241 ~~vI~LV-GptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQL------k---------~yae~lgipv~v~~- 303 (436)
T PRK11889 241 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL------Q---------DYVKTIGFEVIAVR- 303 (436)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHH------H---------HHhhhcCCcEEecC-
Confidence 4688888 66999999999999999999999999999999873221100 0 00111244444321
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-HH-H----HHhhHhCCCeEEEEecCCcchHHHHHHHH
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQ-L----TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~-l----~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (370)
....+...++.+.. ..+||+|||||++.... .. + .+......+.+++|+.+. ...+++...+
T Consensus 304 --------d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT-tk~~d~~~i~ 371 (436)
T PRK11889 304 --------DEAAMTRALTYFKE---EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS-MKSKDMIEII 371 (436)
T ss_pred --------CHHHHHHHHHHHHh---ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc-cChHHHHHHH
Confidence 11222333444321 13699999999975431 11 1 111122347788887654 3456677788
Q ss_pred HHHHcCCCCeEEEEEcCCccCC
Q 017486 327 RMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 327 ~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+.|.. .++-|+|+.+.+-.+
T Consensus 372 ~~F~~--~~idglI~TKLDET~ 391 (436)
T PRK11889 372 TNFKD--IHIDGIVFTKFDETA 391 (436)
T ss_pred HHhcC--CCCCEEEEEcccCCC
Confidence 88876 556789999998765
No 84
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.08 E-value=1.6e-09 Score=98.64 Aligned_cols=162 Identities=15% Similarity=0.083 Sum_probs=90.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCC--Cccc--cccc-CCCCCceeecccCCeeEEec
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVS--PENR--LLEM-NPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~--~~~~--~~~~-~~~~~~i~~~~~~~l~vl~~ 250 (370)
|.|++.-.|+|||++++.|+.+|.++|++|..+= |-.+.... .+.+ .... ...... ...... ..+..
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K-----Pv~~g~~~~~~~~d~~~~~~~~~~~~~--~~~~~~-~~~~~ 73 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK-----PVQSGCEETDRNGDALALQRLSGLPLD--YEDVNP-YRFEE 73 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe-----eEecCCCCCCCcHHHHHHHHHcCCCCC--hhhcCc-eeeCC
Confidence 6789999999999999999999999999998742 11111000 0000 0000 000000 000000 11110
Q ss_pred CCCCccccccCC-chHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH------HHHHhhHhCCCeEEEEecCCcchHHHHH
Q 017486 251 GFSGQGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 251 g~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~------~l~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (370)
.....-.....+ ......+.+.++.+. ++||+||||++++.... ...++... -..+++|+.++..++..+.
T Consensus 74 ~~sp~~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l-~~pvilV~~~~~~~i~~~~ 151 (222)
T PRK00090 74 PLSPHLAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQL-QLPVILVVGVKLGCINHTL 151 (222)
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHh-CCCEEEEECCCCcHHHHHH
Confidence 000000000010 111122333444443 78999999999875311 11111111 1458899999888888888
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccC
Q 017486 324 KGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..++.+++.+.++.|+|+|+++..
T Consensus 152 ~~i~~l~~~~~~i~gvIlN~~~~~ 175 (222)
T PRK00090 152 LTLEAIRARGLPLAGWVANGIPPE 175 (222)
T ss_pred HHHHHHHHCCCCeEEEEEccCCCc
Confidence 889889888999999999998764
No 85
>PRK14974 cell division protein FtsY; Provisional
Probab=99.07 E-value=1.1e-09 Score=105.40 Aligned_cols=227 Identities=19% Similarity=0.232 Sum_probs=122.5
Q ss_pred ccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeEEE
Q 017486 75 TAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVT 151 (370)
Q Consensus 75 ~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~V~ 151 (370)
.+++++.+.|.+++.-.+..|| +...+++.+.-.- .. -... .+....+.+.+.+++.+..+.+...
T Consensus 58 ~~~~~~~~~l~~l~~~Ll~~dv~~~~a~~i~~~~~~~~----~~--~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~---- 126 (336)
T PRK14974 58 IKEKDIEDLLEELELELLESDVALEVAEEILESLKEKL----VG--KKVK-RGEDVEEIVKNALKEALLEVLSVGD---- 126 (336)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH----hh--ccCC-CccCHHHHHHHHHHHHHHHHhCCCc----
Confidence 7888999999988887777776 2233444432111 00 0111 1112244566666666655422111
Q ss_pred eecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccC
Q 017486 152 MSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMN 231 (370)
Q Consensus 152 l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~ 231 (370)
|......++ ..+.+++|+|+ |.+|+||||++++||..|.+.|++|+++++|.++......+.
T Consensus 127 ------~~~~~~~~~--~~~~~~vi~~~-G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~--------- 188 (336)
T PRK14974 127 ------LFDLIEEIK--SKGKPVVIVFV-GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLE--------- 188 (336)
T ss_pred ------chhhhhhhh--ccCCCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHH---------
Confidence 100000000 11234677777 899999999999999999999999999999987643211110
Q ss_pred CCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHH-H----HhhHhCC
Q 017486 232 PEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-T----LCQVVPL 305 (370)
Q Consensus 232 ~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~l-~----~~~~~~~ 305 (370)
......++.+++.....+ ....+.+.++......||+|||||++... +..+ . +......
T Consensus 189 ------~~a~~lgv~v~~~~~g~d---------p~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~p 253 (336)
T PRK14974 189 ------EHAERLGVKVIKHKYGAD---------PAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKP 253 (336)
T ss_pred ------HHHHHcCCceecccCCCC---------HHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCC
Confidence 001112344443221111 11122222222223679999999997553 2221 1 1112345
Q ss_pred CeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
|.+++|+.+.. ......++ +.+.+ .+++-|+|+|+.+-.+
T Consensus 254 d~~iLVl~a~~-g~d~~~~a-~~f~~-~~~~~giIlTKlD~~~ 293 (336)
T PRK14974 254 DLVIFVGDALA-GNDAVEQA-REFNE-AVGIDGVILTKVDADA 293 (336)
T ss_pred ceEEEeecccc-chhHHHHH-HHHHh-cCCCCEEEEeeecCCC
Confidence 88888887744 33333333 44432 2445789999999765
No 86
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.05 E-value=1.1e-09 Score=97.99 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=91.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
+++|++. |-.|+||||+++.||..+..+|++|.+|-+|.++.....- .-.....-|+.+.....
T Consensus 1 p~vi~lv-GptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQ---------------L~~~a~~l~vp~~~~~~ 64 (196)
T PF00448_consen 1 PKVIALV-GPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQ---------------LKTYAEILGVPFYVART 64 (196)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHH---------------HHHHHHHHTEEEEESST
T ss_pred CEEEEEE-CCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHH---------------HHHHHHHhccccchhhc
Confidence 3688888 8889999999999999999889999999999987432110 00111223555554222
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHH-----HHHhhHhCCCeEEEEecCCcchHHHHHHHH
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQ-----LTLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~-----l~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (370)
..+ ....+.+.++....++||+||||||+-.. +.. ..+......+.+++|..+... .+++..+.
T Consensus 65 ~~~---------~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~-~~~~~~~~ 134 (196)
T PF00448_consen 65 ESD---------PAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG-QEDLEQAL 134 (196)
T ss_dssp TSC---------HHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG-GHHHHHHH
T ss_pred chh---------hHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC-hHHHHHHH
Confidence 111 22234344433333689999999996332 211 122223356788888877664 45666666
Q ss_pred HHHHcCCCCeEEEEEcCCccCC
Q 017486 327 RMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 327 ~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+..+..++ -++|+.+.+-..
T Consensus 135 ~~~~~~~~--~~lIlTKlDet~ 154 (196)
T PF00448_consen 135 AFYEAFGI--DGLILTKLDETA 154 (196)
T ss_dssp HHHHHSST--CEEEEESTTSSS
T ss_pred HHhhcccC--ceEEEEeecCCC
Confidence 66666665 488999998644
No 87
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.2e-10 Score=108.82 Aligned_cols=228 Identities=15% Similarity=0.144 Sum_probs=131.8
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeEEEe
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTM 152 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~div~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~V~l 152 (370)
+...+..+-..|++|+...|..||- ..+|++++-+- .-.+.+.--..|--....|.+.+.++|..+......
T Consensus 21 t~~~~~~l~~~L~eI~~ALLesDV~-~~lV~~l~~ni---r~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp~~~---- 92 (483)
T KOG0780|consen 21 TSIDETALNTMLKEICRALLESDVN-PRLVKELRENI---RKIINLEKLASGVNKRRIIQKAVFDELVKLLDPGKS---- 92 (483)
T ss_pred CcchHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHH---HHHhchhhhccccCHHHHHHHHHHHHHHHHhCCCCc----
Confidence 3446677888899999888887772 33444332211 001111112234445778888888888766322111
Q ss_pred ecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCC
Q 017486 153 SAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNP 232 (370)
Q Consensus 153 ~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~ 232 (370)
++ ..-++.+.||.|+ +-.|+||||++..||+++.++|+|++||-+|..++..-.-+..
T Consensus 93 ----~~--------~~~K~kpsVimfV-GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkq--------- 150 (483)
T KOG0780|consen 93 ----AL--------QPKKGKPSVIMFV-GLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQ--------- 150 (483)
T ss_pred ----cc--------ccccCCCcEEEEE-eccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHH---------
Confidence 11 0112234588888 8889999999999999999999999999999988654221111
Q ss_pred CCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh------HHHHHhhHhCCC
Q 017486 233 EKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLT 306 (370)
Q Consensus 233 ~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~------~~l~~~~~~~~d 306 (370)
.....++.+...+...++.. ...+-++++ +.+.||+||+||..-... ....+.....-|
T Consensus 151 ------nA~k~~iP~ygsyte~dpv~-----ia~egv~~f----Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd 215 (483)
T KOG0780|consen 151 ------NATKARVPFYGSYTEADPVK-----IASEGVDRF----KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPD 215 (483)
T ss_pred ------HhHhhCCeeEecccccchHH-----HHHHHHHHH----HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCC
Confidence 11112333332222222111 123344444 358999999999875431 112222333469
Q ss_pred eEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 307 AAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 307 ~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.+|+|.++..- +.+..-...|++ .+.+-++|+.+.+-..
T Consensus 216 ~vi~VmDasiG--Qaae~Qa~aFk~-~vdvg~vIlTKlDGha 254 (483)
T KOG0780|consen 216 EIIFVMDASIG--QAAEAQARAFKE-TVDVGAVILTKLDGHA 254 (483)
T ss_pred eEEEEEecccc--HhHHHHHHHHHH-hhccceEEEEecccCC
Confidence 99999987664 222222233322 3455788888887543
No 88
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.04 E-value=4.3e-09 Score=101.74 Aligned_cols=145 Identities=16% Similarity=0.208 Sum_probs=87.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
.++|++++ ..|+||||++++||..+.++|++|.+|++|+++......+. . .....++.+...
T Consensus 206 ~~ii~lvG-ptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk------~---------yae~lgvpv~~~-- 267 (407)
T PRK12726 206 HRIISLIG-QTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQ------G---------YADKLDVELIVA-- 267 (407)
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHH------H---------HhhcCCCCEEec--
Confidence 57888885 56999999999999999899999999999998753211110 0 001113322221
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHHH----HhhHhCCCeEEEEecCCcchHHHHHHHH
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQLT----LCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~l~----~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (370)
.....+...++.+.. .+.||+||||||+... ...+. +......+.+++|..++ ....++.+++
T Consensus 268 -------~dp~dL~~al~~l~~---~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~d~~~i~ 336 (407)
T PRK12726 268 -------TSPAELEEAVQYMTY---VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSADVMTIL 336 (407)
T ss_pred -------CCHHHHHHHHHHHHh---cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHHHHHHHH
Confidence 011122333443321 1579999999998642 21111 11122346667777653 4445566666
Q ss_pred HHHHcCCCCeEEEEEcCCccCC
Q 017486 327 RMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 327 ~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+.++. +++-|+|+++.+-.+
T Consensus 337 ~~f~~--l~i~glI~TKLDET~ 356 (407)
T PRK12726 337 PKLAE--IPIDGFIITKMDETT 356 (407)
T ss_pred HhcCc--CCCCEEEEEcccCCC
Confidence 66654 556789999999765
No 89
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.03 E-value=2.5e-09 Score=101.24 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=39.4
Q ss_pred CeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+++|+.|+..++.++.++++.+++.+.+..++|+|++.+.
T Consensus 190 t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~ 231 (284)
T TIGR00345 190 TSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPE 231 (284)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCC
Confidence 568999999999999999999999999999999999999875
No 90
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.98 E-value=1.7e-08 Score=96.26 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=89.0
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCc-CCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~-~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
.+++|+|+ |.+|+||||++.+|+..+.+.|++|.+|++|++.+.... +++....+.. ....+++.+.+.
T Consensus 33 ~~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 102 (300)
T TIGR00750 33 NAHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQR---------LATDPGAFIRSM 102 (300)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhh---------cccCCCceeeec
Confidence 45688888 999999999999999999999999999999997753221 2221111110 001233444333
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHH
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 330 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~ 330 (370)
+.... +.+ ......++++.++...||+|||||++ .+...... ...+|.++++..+... .++......+.
T Consensus 103 ~~~~~----~~~--~~~~~~~~~~~l~~~g~D~viidT~G-~~~~e~~i--~~~aD~i~vv~~~~~~--~el~~~~~~l~ 171 (300)
T TIGR00750 103 PTRGH----LGG--LSQATRELILLLDAAGYDVIIVETVG-VGQSEVDI--ANMADTFVVVTIPGTG--DDLQGIKAGLM 171 (300)
T ss_pred Ccccc----ccc--hhHHHHHHHHHHHhCCCCEEEEeCCC-CchhhhHH--HHhhceEEEEecCCcc--HHHHHHHHHHh
Confidence 22110 000 11223333333334789999999995 54433333 3345888888655532 34444444332
Q ss_pred cCCCCeEEEEEcCCccC
Q 017486 331 KLKVPCIAVVENMCHFD 347 (370)
Q Consensus 331 ~~~~~~~gvV~N~v~~~ 347 (370)
+.+. -+|+||++..
T Consensus 172 --~~~~-ivv~NK~Dl~ 185 (300)
T TIGR00750 172 --EIAD-IYVVNKADGE 185 (300)
T ss_pred --hhcc-EEEEEccccc
Confidence 3333 3899999864
No 91
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.97 E-value=6.3e-09 Score=104.47 Aligned_cols=141 Identities=19% Similarity=0.192 Sum_probs=82.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~--G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
+++|+|+ |.+|+||||++.+||..++.. |++|.+|++|.++......+. . .....++.+...
T Consensus 350 G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk------~---------ya~iLgv~v~~a 413 (559)
T PRK12727 350 GGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLH------S---------YGRQLGIAVHEA 413 (559)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHH------H---------hhcccCceeEec
Confidence 5789998 779999999999999998875 589999999987643211000 0 000012222110
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHHH-----HhhHhCCCeEEEEecCCcchHHHHHH
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQLT-----LCQVVPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~l~-----~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (370)
..... +...+..+ .+||+|||||++... +..+. +.... ....++|+... .+..++..
T Consensus 414 ---------~d~~~----L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAt-ss~~Dl~e 476 (559)
T PRK12727 414 ---------DSAES----LLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPAN-AHFSDLDE 476 (559)
T ss_pred ---------CcHHH----HHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECC-CChhHHHH
Confidence 11112 33333333 579999999997542 21110 11111 12334444433 35566677
Q ss_pred HHHHHHcCCCCeEEEEEcCCccCC
Q 017486 325 GVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.++.+... +..|+|+|+++...
T Consensus 477 ii~~f~~~--~~~gvILTKlDEt~ 498 (559)
T PRK12727 477 VVRRFAHA--KPQGVVLTKLDETG 498 (559)
T ss_pred HHHHHHhh--CCeEEEEecCcCcc
Confidence 77777664 46899999998754
No 92
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.93 E-value=5.6e-09 Score=102.38 Aligned_cols=140 Identities=14% Similarity=0.177 Sum_probs=83.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH-HhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTL-AGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~L-A~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
++|+|+ |.+|+||||++++||..+ ...|++|+++|+|.++......+. ......++.+.+..
T Consensus 224 ~vi~lv-GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk---------------~yAe~lgvp~~~~~- 286 (432)
T PRK12724 224 KVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLK---------------RYADTMGMPFYPVK- 286 (432)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHH---------------HHHHhcCCCeeehH-
Confidence 456665 999999999999999876 578999999999998854322110 00011233222210
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHH-HHhhHh------CCCeEEEEecCCcchHHHHH
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL-TLCQVV------PLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~l-~~~~~~------~~d~viiV~~p~~~s~~~~~ 323 (370)
......+.+ ....||+||||||+... ...+ .+..+. ....+++|+.+.. ...++.
T Consensus 287 -----------~~~~l~~~l----~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~-~~~~~~ 350 (432)
T PRK12724 287 -----------DIKKFKETL----ARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS-SYHHTL 350 (432)
T ss_pred -----------HHHHHHHHH----HhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC-CHHHHH
Confidence 011222222 23689999999976432 1111 111111 1235677776555 455667
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
++.+.++..+ +-|+|+.+.+-.+
T Consensus 351 ~~~~~f~~~~--~~glIlTKLDEt~ 373 (432)
T PRK12724 351 TVLKAYESLN--YRRILLTKLDEAD 373 (432)
T ss_pred HHHHHhcCCC--CCEEEEEcccCCC
Confidence 7777776554 4689999998755
No 93
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.92 E-value=4e-09 Score=105.00 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=85.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH--hCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA--~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
.++|+|+ |.+|+||||++++||..++ +.|++|.+||+|.++...... +. ......++.+...
T Consensus 221 ~~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eq------L~---------~~a~~~~vp~~~~ 284 (424)
T PRK05703 221 GGVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQ------LK---------TYAKIMGIPVEVV 284 (424)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHH------HH---------HHHHHhCCceEcc
Confidence 4588888 7799999999999999998 468999999999986322100 00 0000112222211
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH--HH-HHhhHhC----CCeEEEEecCCcchHHHHH
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QL-TLCQVVP----LTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~--~l-~~~~~~~----~d~viiV~~p~~~s~~~~~ 323 (370)
. ....+...++++ ..||+||||||+..... .+ .+..+.. -..+++|+++. ....++.
T Consensus 285 ~---------~~~~l~~~l~~~------~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~-~~~~~l~ 348 (424)
T PRK05703 285 Y---------DPKELAKALEQL------RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT-TKYEDLK 348 (424)
T ss_pred C---------CHHhHHHHHHHh------CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC-CCHHHHH
Confidence 0 111222233332 57999999999643221 11 1111221 13455565543 4567788
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
++++.+...++ -++|+++.+..+
T Consensus 349 ~~~~~f~~~~~--~~vI~TKlDet~ 371 (424)
T PRK05703 349 DIYKHFSRLPL--DGLIFTKLDETS 371 (424)
T ss_pred HHHHHhCCCCC--CEEEEecccccc
Confidence 88888876664 589999998755
No 94
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.82 E-value=1e-07 Score=91.62 Aligned_cols=152 Identities=14% Similarity=0.136 Sum_probs=89.9
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCc-CCCCcccccccCCCCCceeecccCCeeEEe
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~-~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~ 249 (370)
+.+.+|+|+ |.+|+||||++..|+..+...|++|.+|..|+..+.... ++|-...+... ...++..+.+
T Consensus 54 ~~~~~igi~-G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~---------~~~~~~~~r~ 123 (332)
T PRK09435 54 GNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERL---------SRHPNAFIRP 123 (332)
T ss_pred CCcEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhh---------cCCCCeEEEe
Confidence 445689998 889999999999999999999999999999998753321 22211111100 1123333333
Q ss_pred cCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEec-CCcchHHHHHHHHHH
Q 017486 250 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTT-PQKLAFIDVAKGVRM 328 (370)
Q Consensus 250 ~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~-p~~~s~~~~~~~~~~ 328 (370)
.+... .+. .....+.+.+..+....||+|||||++.-. ....+ ...+|.+++|+. +....+...... .
T Consensus 124 ~~~~~----~l~--~~a~~~~~~~~~~~~~g~d~viieT~Gv~q-s~~~i--~~~aD~vlvv~~p~~gd~iq~~k~g--i 192 (332)
T PRK09435 124 SPSSG----TLG--GVARKTRETMLLCEAAGYDVILVETVGVGQ-SETAV--AGMVDFFLLLQLPGAGDELQGIKKG--I 192 (332)
T ss_pred cCCcc----ccc--chHHHHHHHHHHHhccCCCEEEEECCCCcc-chhHH--HHhCCEEEEEecCCchHHHHHHHhh--h
Confidence 22210 011 122334444444444789999999997432 22222 334699999986 444445444431 2
Q ss_pred HHcCCCCeEEEEEcCCccC
Q 017486 329 FSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 329 l~~~~~~~~gvV~N~v~~~ 347 (370)
++..+ -+|+||++..
T Consensus 193 ~E~aD----IiVVNKaDl~ 207 (332)
T PRK09435 193 MELAD----LIVINKADGD 207 (332)
T ss_pred hhhhh----eEEeehhccc
Confidence 22222 3899999953
No 95
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.78 E-value=6.7e-08 Score=94.80 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=85.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh----CCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEE
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 248 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~----~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl 248 (370)
+++|+++ |..|+||||+++.||..+.. .|++|.+|++|.++......+.. .....|+.+.
T Consensus 174 ~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~---------------~a~~lgvpv~ 237 (388)
T PRK12723 174 KRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQT---------------YGDIMGIPVK 237 (388)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHH---------------HhhcCCcceE
Confidence 4577776 88899999999999999873 58999999999987543221110 0001122221
Q ss_pred ecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH--H----HHhhHhCCC-eEEEEecCCcchHHH
Q 017486 249 SFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L----TLCQVVPLT-AAVIVTTPQKLAFID 321 (370)
Q Consensus 249 ~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~--l----~~~~~~~~d-~viiV~~p~~~s~~~ 321 (370)
... . ...+...+... ..||+|||||++...... + ........+ .+++|+.+... ..+
T Consensus 238 ~~~---------~----~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~ 301 (388)
T PRK12723 238 AIE---------S----FKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK-TSD 301 (388)
T ss_pred eeC---------c----HHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHH
Confidence 100 0 11233333332 679999999997543111 1 111111123 67788777654 556
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 322 VAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+.+.++.+... ++-|+|+.+.+-.+
T Consensus 302 ~~~~~~~~~~~--~~~~~I~TKlDet~ 326 (388)
T PRK12723 302 VKEIFHQFSPF--SYKTVIFTKLDETT 326 (388)
T ss_pred HHHHHHHhcCC--CCCEEEEEeccCCC
Confidence 66666666644 45689999998765
No 96
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.76 E-value=4.8e-08 Score=92.20 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=91.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g 251 (370)
.+.+|+|+ |-.|+||||..+.||++|.++|++|++.-+|..+...- .+.-.....-|++++...
T Consensus 138 ~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAi---------------EQL~~w~er~gv~vI~~~ 201 (340)
T COG0552 138 KPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAI---------------EQLEVWGERLGVPVISGK 201 (340)
T ss_pred CcEEEEEE-ecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHH---------------HHHHHHHHHhCCeEEccC
Confidence 35688888 89999999999999999999999999999998764321 111111223477777643
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-HHHH-----HhhHh------CCCeEEEEecCC--cc
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQLT-----LCQVV------PLTAAVIVTTPQ--KL 317 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~l~-----~~~~~------~~d~viiV~~p~--~~ 317 (370)
...++..+ ....++... .+.||+|||||+.-+.. ..+. +.... +.+.+++|..+. ..
T Consensus 202 ~G~DpAaV-----afDAi~~Ak----ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 202 EGADPAAV-----AFDAIQAAK----ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred CCCCcHHH-----HHHHHHHHH----HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 22222221 233444443 48999999999986532 1111 01111 124477775443 33
Q ss_pred hHHHHHHHHHHHHcCCCCeEEEEEcCCccCCCC
Q 017486 318 AFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (370)
Q Consensus 318 s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~~~ 350 (370)
++.+++.+-+. +++-|+|+.+++....+
T Consensus 273 al~QAk~F~ea-----v~l~GiIlTKlDgtAKG 300 (340)
T COG0552 273 ALSQAKIFNEA-----VGLDGIILTKLDGTAKG 300 (340)
T ss_pred HHHHHHHHHHh-----cCCceEEEEecccCCCc
Confidence 44444443333 33678999999876543
No 97
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.76 E-value=2.6e-07 Score=85.85 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=98.8
Q ss_pred ccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCC-cCCCCcccccccCCCCCceeecccCCeeE
Q 017486 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKL 247 (370)
Q Consensus 169 ~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~-~~l~~~~~~~~~~~~~~~i~~~~~~~l~v 247 (370)
..+...+|+|| +-+|+||||+.-.|...|.++|+||.+|--||.+|-.. .++|-.-++... ...+|+.+
T Consensus 47 ~tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~---------~~~~~vFi 116 (323)
T COG1703 47 RTGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRL---------AVDPGVFI 116 (323)
T ss_pred cCCCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhh---------ccCCCeEE
Confidence 34567899999 99999999999999999999999999999999876432 234433222211 11356766
Q ss_pred EecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcch-HHHHHHHH
Q 017486 248 VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGV 326 (370)
Q Consensus 248 l~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s-~~~~~~~~ 326 (370)
-|.+..+.- -.++....+.+..++...||+|||.|-. .+.....+. ..+|.+++|+.|+.-. ++..+..+
T Consensus 117 Rs~~srG~l------GGlS~at~~~i~~ldAaG~DvIIVETVG-vGQsev~I~--~~aDt~~~v~~pg~GD~~Q~iK~Gi 187 (323)
T COG1703 117 RSSPSRGTL------GGLSRATREAIKLLDAAGYDVIIVETVG-VGQSEVDIA--NMADTFLVVMIPGAGDDLQGIKAGI 187 (323)
T ss_pred eecCCCccc------hhhhHHHHHHHHHHHhcCCCEEEEEecC-CCcchhHHh--hhcceEEEEecCCCCcHHHHHHhhh
Confidence 665433211 1123344455444444789999999985 433233332 2349999999988763 34444333
Q ss_pred HHHHcCCCCeEEEEEcCCccC
Q 017486 327 RMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 327 ~~l~~~~~~~~gvV~N~v~~~ 347 (370)
=.+. + -+|+|+.+..
T Consensus 188 mEia--D----i~vINKaD~~ 202 (323)
T COG1703 188 MEIA--D----IIVINKADRK 202 (323)
T ss_pred hhhh--h----eeeEeccChh
Confidence 2222 2 2799999853
No 98
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.71 E-value=7.2e-08 Score=90.48 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=71.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
|++|+|++.| |+||||++.+|+..|+++| +|.+|+.|..... . .-|.+...... .......-...... ++
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~-~-~~g~Ds~~~~~-aGa~~v~~~s~~~~-~~---- 70 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTERL-N-PDGTDTGRHFD-AGADVVYGLTDGEW-VA---- 70 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcC-C-CCCCCcHHHHH-CCCcEEEEecCCeE-EE----
Confidence 4689999665 9999999999999999999 8999999985421 1 00100000000 00000000000111 11
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCC-eEEEEecCCcchHHHH
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLT-AAVIVTTPQKLAFIDV 322 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d-~viiV~~p~~~s~~~~ 322 (370)
...... +.+++..+. ..+|+||||+++...-..+........| .++++..|....+.++
T Consensus 71 ------~~~~~~----l~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s~~d~~~l 130 (274)
T PRK14493 71 ------SGRDRS----LDDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAADLDTEDL 130 (274)
T ss_pred ------EecCCC----HHHHHHhhC-cCCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCCccCHHHH
Confidence 011122 444444443 5799999999986542222223334456 6777777777664443
No 99
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.70 E-value=2.1e-07 Score=87.08 Aligned_cols=145 Identities=15% Similarity=0.181 Sum_probs=89.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
..+|++. +++|+||||+...+|..+...|++|.+|++|.++...... +.. .....++.+...
T Consensus 75 ~~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~q------l~~---------~~~~~~~~~~~~-- 136 (270)
T PRK06731 75 VQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQ------LQD---------YVKTIGFEVIAV-- 136 (270)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH------HHH---------HhhhcCceEEec--
Confidence 3588888 7899999999999999999889999999999875221100 000 000112333321
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHH----HHhhHhCCCeEEEEecCCcchHHHHHHHH
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL----TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~l----~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (370)
.....+...++.+.. ..+||+||||||+... ...+ ........+.+++|+.+.. ...++.+.+
T Consensus 137 -------~~~~~l~~~l~~l~~---~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~-~~~d~~~~~ 205 (270)
T PRK06731 137 -------RDEAAMTRALTYFKE---EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMIEII 205 (270)
T ss_pred -------CCHHHHHHHHHHHHh---cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc-CHHHHHHHH
Confidence 111222333444321 2579999999998652 2211 2222234577788877654 334566667
Q ss_pred HHHHcCCCCeEEEEEcCCccCC
Q 017486 327 RMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 327 ~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+.+.. +++-|+|+.+.+-.+
T Consensus 206 ~~f~~--~~~~~~I~TKlDet~ 225 (270)
T PRK06731 206 TNFKD--IHIDGIVFTKFDETA 225 (270)
T ss_pred HHhCC--CCCCEEEEEeecCCC
Confidence 77765 566789999998754
No 100
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.67 E-value=7.6e-08 Score=100.87 Aligned_cols=144 Identities=16% Similarity=0.180 Sum_probs=89.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH-hCC-CcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA-~~G-~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
+++|+|+ |-.|+||||+...||..+. ..| ++|.+|++|.++......+. ......++.+...
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~---------------~~a~~~gvpv~~~ 248 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLR---------------IYGRILGVPVHAV 248 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHH---------------HHHHhCCCCcccc
Confidence 4688988 9999999999999999885 566 69999999987643211100 0001112222110
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHH-H----HhhHhCCCeEEEEecCCcchHHHHHH
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-T----LCQVVPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~l-~----~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (370)
..... +.+.+..+ ..||+|||||++-.. +..+ . +......+.+++|+.+.. ..+++.+
T Consensus 249 ---------~~~~~----l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~ 312 (767)
T PRK14723 249 ---------KDAAD----LRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNE 312 (767)
T ss_pred ---------CCHHH----HHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHH
Confidence 01112 33333333 578999999997331 2111 1 111223467888887664 4667777
Q ss_pred HHHHHHcC-CCCeEEEEEcCCccCC
Q 017486 325 GVRMFSKL-KVPCIAVVENMCHFDA 348 (370)
Q Consensus 325 ~~~~l~~~-~~~~~gvV~N~v~~~~ 348 (370)
+++.++.. +.++-|+|+.|.+-..
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCCCC
Confidence 88888764 4467899999999765
No 101
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=98.66 E-value=6.8e-07 Score=74.99 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=77.7
Q ss_pred eCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCCccccc
Q 017486 180 SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGRAI 259 (370)
Q Consensus 180 S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~ 259 (370)
.++| +|||+++..|+..|.++|.+|..+.....
T Consensus 6 ~~~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~---------------------------------------------- 38 (134)
T cd03109 6 TGTD-IGKTVATAILARALKEKGYRVAPLKPVQT---------------------------------------------- 38 (134)
T ss_pred CCCC-cCHHHHHHHHHHHHHHCCCeEEEEecCCC----------------------------------------------
Confidence 3555 99999999999999999999999877654
Q ss_pred cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC------hHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCC
Q 017486 260 MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG------DIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK 333 (370)
Q Consensus 260 ~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~------~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~ 333 (370)
+|++||+.++|+. .....+..... ..+++|++++..++.++...++.++..+
T Consensus 39 ---------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~-~~vllV~~~~~g~i~~a~~~~~~l~~~g 96 (134)
T cd03109 39 ---------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELN-LPAILVTSAGLGSINHAFLTIEAARIKG 96 (134)
T ss_pred ---------------------CCEEEEECCCccccCCCCCCCHHHHHHHhC-CCEEEEEcCCCCcHhHHHHHHHHHHhcC
Confidence 5778888776543 11222222332 3478999999999999999999999999
Q ss_pred CCeEEEEEcCCccC
Q 017486 334 VPCIAVVENMCHFD 347 (370)
Q Consensus 334 ~~~~gvV~N~v~~~ 347 (370)
..+.|++.|+....
T Consensus 97 ~~i~gvi~N~~~~~ 110 (134)
T cd03109 97 IILNGVLGNVIVEK 110 (134)
T ss_pred CceeEEEEccCCCc
Confidence 99999999998763
No 102
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.65 E-value=8.2e-07 Score=80.36 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=98.0
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCC----ccccccc-CCCCCceeecccCCee
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP----ENRLLEM-NPEKRTIIPTEYLGVK 246 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~----~~~~~~~-~~~~~~i~~~~~~~l~ 246 (370)
|++.+.|++.-.|+|||++++.|+++|.++|++|... .|-.+-.... +...... ..... .....+.+
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~-----KPVqsG~~~~~~~~D~~~l~~~~~~~~---~~~~~~py 72 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY-----KPVQTGSEETAENSDALVLQRLSGLDL---SYELINPY 72 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEE-----CceeeCCCCCCCCchHHHHHHhcCCCc---ccccccce
Confidence 5789999999999999999999999999999998853 3222211110 0000000 00000 00001122
Q ss_pred EEecCCCCccccccCC-chHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-----hHHH-HHhhHhCCCeEEEEecCCcchH
Q 017486 247 LVSFGFSGQGRAIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTG-----DIQL-TLCQVVPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 247 vl~~g~~~~~~~~~~~-~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-----~~~l-~~~~~~~~d~viiV~~p~~~s~ 319 (370)
.+..+....-.....+ ....+.+..-+..+. ..||+|||-...|+- +..+ ..... -.--+|+|+....-++
T Consensus 73 ~f~~P~sPhlAa~~eg~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~-~~lpvILV~~~~LGtI 150 (223)
T COG0132 73 RFKEPLSPHLAAELEGRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQ-LQLPVILVVGIKLGTI 150 (223)
T ss_pred ecCCCCCcHHHHhhcCCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHH-cCCCEEEEecCCccHH
Confidence 2211111000000000 011222333332333 699999999999862 1111 11111 1255889999999999
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..+.-.++.+++.++++.|+|.|..++..
T Consensus 151 NHtlLt~eal~~~gl~l~G~I~n~~~~~~ 179 (223)
T COG0132 151 NHTLLTVEALRARGLPLAGWVANGINPEL 179 (223)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEccCCCch
Confidence 99999999999999999999999988754
No 103
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.61 E-value=1.1e-06 Score=80.66 Aligned_cols=165 Identities=17% Similarity=0.133 Sum_probs=91.9
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCc----CCCCcccccccCCCCCceeecccCCee-
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT----MVSPENRLLEMNPEKRTIIPTEYLGVK- 246 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~----~l~~~~~~~~~~~~~~~i~~~~~~~l~- 246 (370)
|++.|.|++.-.|+|||++++.|+..|.++|++|..+=- -...... ....+..+.... .. .+.....+.
T Consensus 1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KP--i~~g~~~~~~~~~~~D~~~l~~~--~~--~~~~~~~~~p 74 (231)
T PRK12374 1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKP--VAKGSKETPEGLRNKDALVLQSV--SS--IELPYEAVNP 74 (231)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECc--cccCCccCCCCCchHHHHHHHHh--cC--CCCCHHhccC
Confidence 456799999999999999999999999999999998632 1111100 000000000000 00 000000000
Q ss_pred -EEecCCCCc-cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-----HHHHHhhHhCCCeEEEEecCCcchH
Q 017486 247 -LVSFGFSGQ-GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-----IQLTLCQVVPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 247 -vl~~g~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-----~~l~~~~~~~~d~viiV~~p~~~s~ 319 (370)
.+....... ....+. .....+.+ +.+. ++||+|||+..+|+.. ..+.-.....---+++|+....-++
T Consensus 75 ~~~~~~~a~~~~~~~i~---~~~i~~~~-~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~i 149 (231)
T PRK12374 75 IALSEEESSVAHSCPIN---YTLMSNGL-ANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCI 149 (231)
T ss_pred eecCCCcChHHcCCcCC---HHHHHHHH-HHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChH
Confidence 111111000 000111 12222222 3333 7899999999985421 1111111112345788887777778
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 320 IDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.-.++.+...++++.|+|+|++++.
T Consensus 150 n~~lLt~~~l~~~~~~~~gvV~N~~~~~ 177 (231)
T PRK12374 150 NHALLTAQAIANDGLPLIGWVANRINPG 177 (231)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEeCccCc
Confidence 8888888889899999999999998764
No 104
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.57 E-value=6.5e-08 Score=91.44 Aligned_cols=42 Identities=29% Similarity=0.444 Sum_probs=37.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC-C-CcEEEeeCCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVYGP 215 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~-G-~rVllID~D~~~~ 215 (370)
+++|+|+ |.+|+||||++++||.+++.. | ++|.+|++|.++.
T Consensus 194 ~~vi~~v-GptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 194 GGVIALV-GPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 4688888 679999999999999999976 5 9999999999763
No 105
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.57 E-value=1e-06 Score=88.72 Aligned_cols=143 Identities=18% Similarity=0.175 Sum_probs=83.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
++.|.|++.++|+||||++++|+.+|+++|++|..+...+.. .+..+... +......+++...
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~--------~d~~~~~~------~~g~~~~~ld~~~--- 65 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDY--------IDPAYHTA------ATGRPSRNLDSWM--- 65 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCc--------ccHHHHHH------HhCCCcccCCcee---
Confidence 568999999999999999999999999999999999885321 01000000 0000001221111
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh---------HHHHHhhHhCCCeEEEEecCCcch--HHH
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLA--FID 321 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~---------~~l~~~~~~~~d~viiV~~p~~~s--~~~ 321 (370)
.. ...+.+.+..+. +.||++||....|+-+ ....++.... .-+|+|+.....+ +..
T Consensus 66 -------~~----~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~-~pviLV~~~~~~~~~~a~ 132 (451)
T PRK01077 66 -------MG----EELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLG-APVVLVVDASGMAQSAAA 132 (451)
T ss_pred -------CC----HHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhC-CCEEEEECCchHHHHHHH
Confidence 11 123444444433 6899999977644321 1223333333 3467777766533 223
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 322 VAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
+...+..+ ..++++.|+|+|++..
T Consensus 133 l~~~~~~~-~~~i~i~GvI~N~v~~ 156 (451)
T PRK01077 133 LVLGFATF-DPDVRIAGVILNRVGS 156 (451)
T ss_pred HHHHHHHh-CCCCCEEEEEEECCCC
Confidence 33333344 2378999999999964
No 106
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.55 E-value=1.5e-06 Score=91.83 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=87.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g 251 (370)
|+|.|.|++...|+|||+++..|+.+|.++|+||..+=-..+.| . .. .... ..+..+
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p-~----~~----------------~~~~--~~~~~~ 57 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPP-L----TM----------------SEVE--ALLASG 57 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCC-C----CH----------------HHHH--HHHhcc
Confidence 46789999999999999999999999999999999876433321 0 00 0000 000000
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH------HHHHhhHhCCCeEEEEecCCcchHHH----
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFID---- 321 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~------~l~~~~~~~~d~viiV~~p~~~s~~~---- 321 (370)
......+.+.+.+..+. ++||+||||.+.+.+.. ...++..+ .+.+++|++++..++.+
T Consensus 58 ---------~~~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L-~~pVILV~~~~~~si~d~~~~ 126 (684)
T PRK05632 58 ---------QLDELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNL-GAEVVLVSSGGNDTPEELAER 126 (684)
T ss_pred ---------CChHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHHh-CCCEEEEECCCCCChHHHHHH
Confidence 00011122222223333 78999999998755421 11222222 26789999988877544
Q ss_pred HHHHHHHHH-cCCCCeEEEEEcC--CccC
Q 017486 322 VAKGVRMFS-KLKVPCIAVVENM--CHFD 347 (370)
Q Consensus 322 ~~~~~~~l~-~~~~~~~gvV~N~--v~~~ 347 (370)
+.-..+.+. ..+.++.|+|+|+ ++..
T Consensus 127 i~~~~~~l~~~~~~~v~GVIvNr~~v~~~ 155 (684)
T PRK05632 127 IELAASSFGGAKNANILGVIINKLNAPVD 155 (684)
T ss_pred HHHHHHHhccCCCCcEEEEEEECCCCCHH
Confidence 444445554 5578999999999 5543
No 107
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.52 E-value=8.9e-07 Score=86.34 Aligned_cols=144 Identities=15% Similarity=0.147 Sum_probs=83.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-CC-CcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~-~G-~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
..+++++ |..|+||||+++.||..+.. .| ++|.+|.+|.++......+. ......|+.+...
T Consensus 137 g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~---------------~~a~~~gv~~~~~ 200 (374)
T PRK14722 137 GGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLR---------------IFGKILGVPVHAV 200 (374)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHH---------------HHHHHcCCceEec
Confidence 4577777 99999999999999998764 46 69999999998643211000 0001112222211
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHHH-HHhhH---hCCCeEEEEecCCcchHHHHHH
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQL-TLCQV---VPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~l-~~~~~---~~~d~viiV~~p~~~s~~~~~~ 324 (370)
.....+...+.++ .++|+|||||++-.. .... .+..+ ......++|+.+.. ...++..
T Consensus 201 ---------~~~~~l~~~l~~l------~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l~e 264 (374)
T PRK14722 201 ---------KDGGDLQLALAEL------RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTLNE 264 (374)
T ss_pred ---------CCcccHHHHHHHh------cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHHHH
Confidence 1111222334333 678999999996331 2111 11112 12345677776654 4455555
Q ss_pred HHHHHHcCC-------CCeEEEEEcCCccCC
Q 017486 325 GVRMFSKLK-------VPCIAVVENMCHFDA 348 (370)
Q Consensus 325 ~~~~l~~~~-------~~~~gvV~N~v~~~~ 348 (370)
.++.+.+.. .++-|+|+.+.+-..
T Consensus 265 vi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 265 VVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred HHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 666665442 246799999998654
No 108
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.51 E-value=4.6e-07 Score=83.12 Aligned_cols=127 Identities=20% Similarity=0.262 Sum_probs=76.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCC-cCCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~-~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
...+|+|| +-+|+||||+.-.|+..+.+.|+||.++-.||.+|-.. .++|-.-++... ...+++++-|.
T Consensus 28 ~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~---------~~d~~vfIRS~ 97 (266)
T PF03308_consen 28 RAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQEL---------SRDPGVFIRSM 97 (266)
T ss_dssp -SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHH---------HTSTTEEEEEE
T ss_pred CceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCc---------CCCCCEEEeec
Confidence 45799999 99999999999999999999999999999999877543 344433222211 12357777664
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 317 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~ 317 (370)
+....- -.+.....+.+..++...||+|||.|-. .+.....+. ..+|.+++|+.|+.-
T Consensus 98 atRG~l------GGls~~t~~~v~ll~aaG~D~IiiETVG-vGQsE~~I~--~~aD~~v~v~~Pg~G 155 (266)
T PF03308_consen 98 ATRGSL------GGLSRATRDAVRLLDAAGFDVIIIETVG-VGQSEVDIA--DMADTVVLVLVPGLG 155 (266)
T ss_dssp ---SSH------HHHHHHHHHHHHHHHHTT-SEEEEEEES-SSTHHHHHH--TTSSEEEEEEESSTC
T ss_pred CcCCCC------CCccHhHHHHHHHHHHcCCCEEEEeCCC-CCccHHHHH--HhcCeEEEEecCCCc
Confidence 433211 1123334444444444689999999984 554444443 335999998888764
No 109
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.48 E-value=2.3e-06 Score=86.68 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=86.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC-CCCCCCCcCCCCccc---ccc----cCCCCCceeeccc--C--
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD-VYGPSLPTMVSPENR---LLE----MNPEKRTIIPTEY--L-- 243 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D-~~~~sl~~~l~~~~~---~~~----~~~~~~~i~~~~~--~-- 243 (370)
|.|++...++|||++++.|+..|.++|++|..+-.= ...++....-+.+.. +.. .......+.|... +
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~~~~s~~~~~~~e~~~a~~~qa~a~~~~~~~~~nPv~lk~~~~ 80 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNMSLNSFVTKEGGEIAIAQATQALAAGIEPSVHMNPILLKPKGN 80 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCcccccCccccCCCchhHHHHHHHHHhCCCCchhccCCEEeCcCCC
Confidence 568899999999999999999999999999976552 111111000011100 000 0000111111100 0
Q ss_pred -CeeEEecCCCCcccc-----ccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH--------HHHHhhHhCCCeEE
Q 017486 244 -GVKLVSFGFSGQGRA-----IMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAV 309 (370)
Q Consensus 244 -~l~vl~~g~~~~~~~-----~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~--------~l~~~~~~~~d~vi 309 (370)
...++-.|....... ..........+.+.+..+. ..||+||||.++|+.+. ...++....++ ++
T Consensus 81 ~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap-VI 158 (475)
T TIGR00313 81 FTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD-AI 158 (475)
T ss_pred CcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC-EE
Confidence 111222221100000 0000222333444444443 68999999999875431 22333344445 55
Q ss_pred EEecCCcch-HHHHHHHHHHHHcC-CCCeEEEEEcCCcc
Q 017486 310 IVTTPQKLA-FIDVAKGVRMFSKL-KVPCIAVVENMCHF 346 (370)
Q Consensus 310 iV~~p~~~s-~~~~~~~~~~l~~~-~~~~~gvV~N~v~~ 346 (370)
+|+.....+ +..+..++..++.. +..+.|+|+|++..
T Consensus 159 LV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~ 197 (475)
T TIGR00313 159 LVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRG 197 (475)
T ss_pred EEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCC
Confidence 666665543 34555556665543 36789999999885
No 110
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=98.46 E-value=9.7e-07 Score=78.97 Aligned_cols=163 Identities=15% Similarity=0.185 Sum_probs=91.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccccccc-CCCCCceeecccCCeeEEecCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM-NPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~-~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
|.|.|++.-.|+|||+++..|+.+|.++|.||.++=-=.++..- +.+...... ..... +........+..+.
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~~----d~d~~~~~~~~~~~~---~~~~~~~~~~~~~~ 73 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPED----DEDAELIRELFGLSE---PPDDPSPYTFDEPA 73 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCCC----SSHHHHHHHHCCTCC---CHHHHECEEESSSS
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCCC----CchHHHHHHHhCCCc---ccccccccccCccc
Confidence 47899999999999999999999999999999854210000000 000000000 00000 00000011111110
Q ss_pred CCccccccCCchHHHHHHHH-HHhcCCCCCcEEEEcCCCCCC------hHHHHHhhHhCCCeEEEEecCCcchHHHHHHH
Q 017486 253 SGQGRAIMRGPMVSGVINQL-LTTTEWGELDYLVIDMPPGTG------DIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~l-l~~~~~~~yD~VIIDtpp~~~------~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~ 325 (370)
. ....-........++++ .+.+. +.+|++||+...+.. .....++.... -.+|+|+....-++.++.-.
T Consensus 74 ~--~~~~~~~~~~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~-a~vIlV~~~~~g~i~~~l~~ 149 (199)
T PF13500_consen 74 S--PHLAAELEGVDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKALG-APVILVASGRLGTINHTLLT 149 (199)
T ss_dssp ---HHHHHHHHT----HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHHHHHHH
T ss_pred C--HHHHhhccCCcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHcC-CCEEEEeCCCCCCHHHHHHH
Confidence 0 00000000001113333 24444 789999999988653 22233333443 35788888888899999999
Q ss_pred HHHHHcCCCCeEEEEEcCCccC
Q 017486 326 VRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
++.+++.|+++.|+|+|++...
T Consensus 150 ~~~~~~~g~~v~GvI~N~~~~~ 171 (199)
T PF13500_consen 150 IEALKQRGIRVLGVILNRVPEP 171 (199)
T ss_dssp HHHHHCTTS-EEEEEEEECTCC
T ss_pred HHHHHhcCCCEEEEEEECCCCH
Confidence 9999999999999999997653
No 111
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.34 E-value=3.1e-06 Score=85.15 Aligned_cols=142 Identities=16% Similarity=0.162 Sum_probs=80.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH-hCC-CcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMG-ARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA-~~G-~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
+++|++. |-.|+||||++++||..+. +.| ++|.+|++|.++..... .+ -......|+.+...
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~E------QL---------r~~AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHE------QL---------RIYGKILGVPVHAV 319 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHH------HH---------HHHHHHhCCCeecc
Confidence 4689988 8999999999999999886 455 59999999986532100 00 00001112211110
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHH-HHhhHhC----CCeEEEEecCCcchHHHHHH
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-TLCQVVP----LTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~l-~~~~~~~----~d~viiV~~p~~~s~~~~~~ 324 (370)
. ........+.++ .++|+++|||++... +..+ ....... ....++|+.... ...++.+
T Consensus 320 ~---------~~~Dl~~aL~~L------~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~-~~~~l~~ 383 (484)
T PRK06995 320 K---------DAADLRLALSEL------RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS-HGDTLNE 383 (484)
T ss_pred C---------CchhHHHHHHhc------cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC-cHHHHHH
Confidence 0 000111112222 578999999975321 1111 1111111 133566665443 4466777
Q ss_pred HHHHHHcCCCCeEEEEEcCCccCC
Q 017486 325 GVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.++.++..+ +-|+|+|+.+...
T Consensus 384 i~~~f~~~~--~~g~IlTKlDet~ 405 (484)
T PRK06995 384 VVQAYRGPG--LAGCILTKLDEAA 405 (484)
T ss_pred HHHHhccCC--CCEEEEeCCCCcc
Confidence 777776644 5689999998765
No 112
>PRK00784 cobyric acid synthase; Provisional
Probab=98.28 E-value=1.7e-05 Score=80.77 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=34.6
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
|++.|.|++...|+|||++++.|+.+|.++|++|..+-
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~K 38 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFK 38 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEeccc
Confidence 46789999999999999999999999999999998653
No 113
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=1.9e-06 Score=84.31 Aligned_cols=157 Identities=20% Similarity=0.184 Sum_probs=97.7
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc-cccccCCCCCceeecccCCeeEEe
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLEMNPEKRTIIPTEYLGVKLVS 249 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~-~~~~~~~~~~~i~~~~~~~l~vl~ 249 (370)
+.+-+|.|+ |-.||||||--+.+|+||-+.+.||++.-||+.+...-.-++..- ++.. +.+ .-+.++.
T Consensus 376 krPYVi~fv-GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~-------l~~---~~v~lfe 444 (587)
T KOG0781|consen 376 KRPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSA-------LHG---TMVELFE 444 (587)
T ss_pred CCCeEEEEE-eecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHH-------hcc---chhHHHh
Confidence 345688888 899999999999999999999999999999997744311111100 0000 000 0111222
Q ss_pred cCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-HHHH-----HhhHhCCCeEEEEecC--CcchHHH
Q 017486 250 FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQLT-----LCQVVPLTAAVIVTTP--QKLAFID 321 (370)
Q Consensus 250 ~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~l~-----~~~~~~~d~viiV~~p--~~~s~~~ 321 (370)
.|... .......+.+++.+.+.||+|+|||+.-..+ ..+. +......|.++.|-.+ +..++..
T Consensus 445 kGYgk---------d~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q 515 (587)
T KOG0781|consen 445 KGYGK---------DAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQ 515 (587)
T ss_pred hhcCC---------ChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHH
Confidence 22222 2233345555555568999999999986532 2221 1112246889988654 4567888
Q ss_pred HHHHHHHHHcCCCC--eEEEEEcCCccC
Q 017486 322 VAKGVRMFSKLKVP--CIAVVENMCHFD 347 (370)
Q Consensus 322 ~~~~~~~l~~~~~~--~~gvV~N~v~~~ 347 (370)
+.++-+.|....-+ +-|+|+.+++..
T Consensus 516 ~~~fn~al~~~~~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 516 LKKFNRALADHSTPRLIDGILLTKFDTV 543 (587)
T ss_pred HHHHHHHHhcCCCccccceEEEEeccch
Confidence 88888888765422 568888887753
No 114
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.19 E-value=9.2e-06 Score=79.04 Aligned_cols=142 Identities=18% Similarity=0.253 Sum_probs=88.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH--hCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA--~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
.++|+++ |-.||||||+-+.||..+. ...+||.+|-.|.++=....-+. .....-|+.+.-
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk---------------~Ya~im~vp~~v- 265 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK---------------TYADIMGVPLEV- 265 (407)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH---------------HHHHHhCCceEE-
Confidence 6789998 8899999999999999999 45689999999998732211000 000111222221
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHH-----HHhhHhCCCeEEEEecCCcchHHHHHH
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQL-----TLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~l-----~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (370)
......+...+..+ .+||+|+|||.+-.. |... .+........+.+|...+ +...+++.
T Consensus 266 --------v~~~~el~~ai~~l------~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat-~K~~dlke 330 (407)
T COG1419 266 --------VYSPKELAEAIEAL------RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSAT-TKYEDLKE 330 (407)
T ss_pred --------ecCHHHHHHHHHHh------hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecC-cchHHHHH
Confidence 12233344455555 688999999986321 2111 111111234455555544 45678899
Q ss_pred HHHHHHcCCCCeEEEEEcCCccCC
Q 017486 325 GVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+++.++..++ -|+|+.+.+-..
T Consensus 331 i~~~f~~~~i--~~~I~TKlDET~ 352 (407)
T COG1419 331 IIKQFSLFPI--DGLIFTKLDETT 352 (407)
T ss_pred HHHHhccCCc--ceeEEEcccccC
Confidence 9999987655 688999988643
No 115
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.18 E-value=1.3e-05 Score=73.71 Aligned_cols=159 Identities=23% Similarity=0.270 Sum_probs=93.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecc-cCCeeEEecC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTE-YLGVKLVSFG 251 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~-~~~l~vl~~g 251 (370)
+.+|.|. |-.|.||||....|-.++...+.+.-+|.+||.-.+++.-.+++-+ +.+...+ .... +
T Consensus 19 p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIR--------DtVkYkEvMkqY-----~ 84 (366)
T KOG1532|consen 19 PVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIR--------DTVKYKEVMKQY-----Q 84 (366)
T ss_pred CcEEEEE-ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchh--------hhhhHHHHHHHh-----C
Confidence 3455555 8889999999999999999998899999999987777665444311 1110000 0000 0
Q ss_pred CCCccccccCCchHHHHHHHHHHhcC--CCCCcEEEEcCCCCCChH---------HHHHhhHhCCCeEEEEe-cCCcc--
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTE--WGELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVT-TPQKL-- 317 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~yD~VIIDtpp~~~~~---------~l~~~~~~~~d~viiV~-~p~~~-- 317 (370)
...++-....-..+...+.++++.++ .+.+||+|||||.-.... .-+++...+ ..++.|+ +|...
T Consensus 85 LGPNGgI~TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~p-tvv~YvvDt~rs~~p 163 (366)
T KOG1532|consen 85 LGPNGGIVTSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFP-TVVVYVVDTPRSTSP 163 (366)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCC-eEEEEEecCCcCCCc
Confidence 11111122222344455564443332 267999999999854211 112222222 2223333 33332
Q ss_pred --hHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 318 --AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 318 --s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
-+....-+...|-+..+|.+ +++|+.+..
T Consensus 164 ~tFMSNMlYAcSilyktklp~i-vvfNK~Dv~ 194 (366)
T KOG1532|consen 164 TTFMSNMLYACSILYKTKLPFI-VVFNKTDVS 194 (366)
T ss_pred hhHHHHHHHHHHHHHhccCCeE-EEEeccccc
Confidence 25667788889999999977 899998864
No 116
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.04 E-value=7.7e-06 Score=82.32 Aligned_cols=51 Identities=29% Similarity=0.397 Sum_probs=47.4
Q ss_pred CCeEEEEEeCCC---CChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc
Q 017486 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 225 (370)
Q Consensus 172 ~~kvI~v~S~kG---GvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~ 225 (370)
..|+|.|||..+ |+||||+++|||..|++.|+||+++ ++.|+++..|+.+.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli---LR~Psl~~~fg~kg 107 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA---LREPSLGPVFGIKG 107 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE---EecCCcccccCCCC
Confidence 468999999999 9999999999999999999999999 99999999987654
No 117
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.02 E-value=2.8e-06 Score=78.31 Aligned_cols=40 Identities=30% Similarity=0.277 Sum_probs=29.4
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcC
Q 017486 181 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM 220 (370)
Q Consensus 181 ~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~ 220 (370)
|-.|+||||.+..+..++...|++|.+|.+||....++.-
T Consensus 3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~ 42 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYP 42 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS-
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccC
Confidence 5679999999999999999999999999999988766553
No 118
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=98.01 E-value=1e-05 Score=80.51 Aligned_cols=52 Identities=23% Similarity=0.313 Sum_probs=47.6
Q ss_pred CCeEEEEEeCCC---CChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc
Q 017486 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR 226 (370)
Q Consensus 172 ~~kvI~v~S~kG---GvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~ 226 (370)
..|+|.|+|..+ |+||||++++||..|++.|+||+++ ++.|++...||....
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg~kgg 91 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIKGG 91 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccCCCCC
Confidence 468999999999 9999999999999999999999988 999999999887643
No 119
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=97.94 E-value=1.4e-05 Score=80.29 Aligned_cols=51 Identities=22% Similarity=0.404 Sum_probs=47.1
Q ss_pred CCeEEEEEeCCC---CChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc
Q 017486 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 225 (370)
Q Consensus 172 ~~kvI~v~S~kG---GvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~ 225 (370)
..|+|.|+|.-+ |+||||++++||..|++.|+|| ||+ ++.|++...||...
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~kg 106 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGVKG 106 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCCCC
Confidence 468999999999 9999999999999999999999 899 99999999987654
No 120
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.82 E-value=0.0003 Score=70.94 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=32.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
|.|++...|+|||++++.|+.+|+++|++|..+=.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 67899999999999999999999999999998854
No 121
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.80 E-value=0.00044 Score=69.81 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=82.5
Q ss_pred ccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEE
Q 017486 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLV 248 (370)
Q Consensus 169 ~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl 248 (370)
.++.++.|.|++...|+||||+|+.|+.+|.++ |..+=+.+ .. . .+.| ....+
T Consensus 234 ~~~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~Gp---D~----------i-------d~~p----~~~~~ 286 (476)
T PRK06278 234 ERNKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGP---DV----------R-------DIVP----SLYLL 286 (476)
T ss_pred hhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCC---Ch----------h-------hcCC----cceec
Confidence 344567899999999999999999999999875 44443211 00 0 0000 11110
Q ss_pred e---cCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH---------HHHHhhHhCCCeEEEEecCCc
Q 017486 249 S---FGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI---------QLTLCQVVPLTAAVIVTTPQK 316 (370)
Q Consensus 249 ~---~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~---------~l~~~~~~~~d~viiV~~p~~ 316 (370)
+ .+.................++.+ ....+|++||....|+-+. ...++.... --+|+|+....
T Consensus 287 ~~~~sp~~a~n~~~d~~~~~~~~~~~~----~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~-~PVILV~~~~~ 361 (476)
T PRK06278 287 REKMTKYNSIKIGDRGWSDVEEFLEFV----KNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALG-FPVYIVSSCSK 361 (476)
T ss_pred ccccCChHHHhhcCCcccCHHHHHHHH----HhcCCCEEEEECCCCcccccCCCCccccHHHHHHHhC-CCEEEEEcCCC
Confidence 0 00000000000001222334442 1246899999998765332 122333333 35788888887
Q ss_pred chHHHHHH----HHHHHHcCCCCeEEEEEcCCcc
Q 017486 317 LAFIDVAK----GVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 317 ~s~~~~~~----~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
.++..+.. +.+.+++.++++.|+|+|++..
T Consensus 362 g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~ 395 (476)
T PRK06278 362 SGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYN 395 (476)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCc
Confidence 77544433 4456667789999999999985
No 122
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.80 E-value=0.00038 Score=67.71 Aligned_cols=42 Identities=38% Similarity=0.436 Sum_probs=37.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl 217 (370)
++++. |--++||||++.-||..+-++|+||.+||+|+.++.+
T Consensus 75 ~vmvv-G~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei 116 (398)
T COG1341 75 VVMVV-GPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEI 116 (398)
T ss_pred EEEEE-CCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCccc
Confidence 77787 5557899999999999999999999999999988765
No 123
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.79 E-value=0.00013 Score=68.35 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=51.9
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+.+++.|||||+...........+..+|.+++|+.+.........+.++.+...+++.+ +|+|+++..
T Consensus 61 ~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~~ 129 (268)
T cd04170 61 WKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDRE 129 (268)
T ss_pred ECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCccC
Confidence 577899999999754322233334556799999999887766677788888888888866 799999864
No 124
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.0005 Score=68.28 Aligned_cols=141 Identities=15% Similarity=0.140 Sum_probs=81.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH-hC-CCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GM-GARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA-~~-G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
+.+|++. |..|+||||+...||..+. .. +.++.++-+|.++......+ .......|+.+...
T Consensus 191 g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL---------------~~~a~ilGvp~~~v 254 (420)
T PRK14721 191 GGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQL---------------RIYGKLLGVSVRSI 254 (420)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHH---------------HHHHHHcCCceecC
Confidence 4688888 9999999999999998654 33 47889998888653211000 00001112222211
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--HH--HHHhhH---hCCCeEEEEecCCcchHHHHH
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQ--LTLCQV---VPLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~--l~~~~~---~~~d~viiV~~p~~~s~~~~~ 323 (370)
. ....+...+..+ .++|+|+|||+ |... .. -.+..+ ......++|+.+. ....++.
T Consensus 255 ~---------~~~dl~~al~~l------~~~d~VLIDTa-Grsqrd~~~~~~l~~l~~~~~~~~~~LVl~at-~~~~~~~ 317 (420)
T PRK14721 255 K---------DIADLQLMLHEL------RGKHMVLIDTV-GMSQRDQMLAEQIAMLSQCGTQVKHLLLLNAT-SSGDTLD 317 (420)
T ss_pred C---------CHHHHHHHHHHh------cCCCEEEecCC-CCCcchHHHHHHHHHHhccCCCceEEEEEcCC-CCHHHHH
Confidence 0 111122223332 68999999997 5432 11 111111 1234667777655 3456677
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+++..+.. .++-|+|+.+.+-.+
T Consensus 318 ~~~~~f~~--~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 318 EVISAYQG--HGIHGCIITKVDEAA 340 (420)
T ss_pred HHHHHhcC--CCCCEEEEEeeeCCC
Confidence 77777765 445789999998654
No 125
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.60 E-value=0.0005 Score=59.90 Aligned_cols=68 Identities=15% Similarity=0.055 Sum_probs=45.5
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..++++++|+|+...........+..+|.+++|+.............+..+.+.+.+++ +|+|+++..
T Consensus 60 ~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~-iv~nK~D~~ 127 (189)
T cd00881 60 PDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPII-VAINKIDRV 127 (189)
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeE-EEEECCCCc
Confidence 35789999998532222222222445799999988776554555666777776677755 899999864
No 126
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.58 E-value=0.00051 Score=67.71 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=52.5
Q ss_pred CCCCcEEEEcCCCCCC-h-H-------HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 278 WGELDYLVIDMPPGTG-D-I-------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~-~-~-------~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
|....+.+|||+.-.. + . ..+..++..+|.+++|+....--..+=+.+.+.|++.+.|++ +|+|+++...
T Consensus 48 ~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpvi-LvvNK~D~~~ 126 (444)
T COG1160 48 WLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVI-LVVNKIDNLK 126 (444)
T ss_pred EcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEEcccCch
Confidence 5677899999985331 1 1 113333456899999998776433444566778887777866 8999999863
Q ss_pred ---CCccccccCCC
Q 017486 349 ---DGKRYYPFGRG 359 (370)
Q Consensus 349 ---~~~~~~~~g~~ 359 (370)
..+.+|.+|.+
T Consensus 127 ~e~~~~efyslG~g 140 (444)
T COG1160 127 AEELAYEFYSLGFG 140 (444)
T ss_pred hhhhHHHHHhcCCC
Confidence 23345555544
No 127
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.57 E-value=0.00062 Score=61.46 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||+...........+..+|.+++|+...........+.++.+...+.+++ +|+|+++..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~ 136 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIV-LVINKIDRL 136 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccC
Confidence 45789999999643322233333556799999988765433344555566655676655 899999963
No 128
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.56 E-value=0.00092 Score=61.59 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=49.9
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+.+.+.++|||+...........+..+|.+++|+.....-....++.++.+.+.+.+++ +++||.+..
T Consensus 61 ~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~~ 129 (237)
T cd04168 61 WEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDRA 129 (237)
T ss_pred ECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccc
Confidence 467889999998533222222333455799999988776555567788888888899976 899999864
No 129
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.55 E-value=0.00045 Score=61.70 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=50.0
Q ss_pred CCCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
++.+.+++||||. ..+. ......+..+|.+++|+.+...-....++.+..+.+.+.+.+-+++|+.+..
T Consensus 62 ~~~~~i~~iDtPG-~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 62 TANRHYAHVDCPG-HADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred CCCeEEEEEECcC-HHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 3567899999995 3322 2223334567999999988775556677888889888988666889999863
No 130
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.52 E-value=0.0012 Score=62.09 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=50.8
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+.+.+.+||||+...........+..+|.+++|+.....-.....+.++.+.+.+.+++ +++|+.+..
T Consensus 61 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~~ 129 (270)
T cd01886 61 WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDRT 129 (270)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 577899999998533222222333556799999998776555667788888888899987 899999964
No 131
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.49 E-value=0.0017 Score=63.82 Aligned_cols=141 Identities=22% Similarity=0.270 Sum_probs=76.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC--CCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA--DVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~--D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
.|.+.+...|+||||++..|..+|.++|.+|--+=. |.-.|+.+.. +.-....|||..
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~----------------atG~~srNLD~~---- 61 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTA----------------ATGRPSRNLDSW---- 61 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhhH----------------hhCCccCCCchh----
Confidence 477888999999999999999999999987743222 1111111111 000011122221
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh---------HHHHHhhHhCCCeEEEEecCCcchHHH--
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFID-- 321 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~---------~~l~~~~~~~~d~viiV~~p~~~s~~~-- 321 (370)
++.. ..++++..+.. ++.|+.||..--|+-| ....++.++. --||+|++....+...
T Consensus 62 ------mm~~----~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~-~PVvLVid~~~~s~S~AA 129 (451)
T COG1797 62 ------MMGE----EGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLG-APVVLVVDASGLSRSVAA 129 (451)
T ss_pred ------hcCH----HHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhC-CCEEEEEeCcchhHHHHH
Confidence 1111 33444444433 6788888754333211 1122222332 3367777766654432
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 322 VAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+.+..+.+ +-++++.|||+|++..+.
T Consensus 130 iv~G~~~f-dp~v~iaGVIlNrVgser 155 (451)
T COG1797 130 IVKGFKHF-DPDVNIAGVILNRVGSER 155 (451)
T ss_pred HHHHHHhc-CCCCceEEEEEecCCCHH
Confidence 33333333 236778999999998654
No 132
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.45 E-value=0.0015 Score=55.17 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCChHH--------HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~--------l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..++++++|||+-..... ........+|.+++|+..............+.+.+.+.+++ +|+||++..
T Consensus 49 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~ 124 (168)
T cd04163 49 DDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVI-LVLNKIDLV 124 (168)
T ss_pred CCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEE-EEEEchhcc
Confidence 357899999986322111 11122345688888887776533444556666666667754 899998864
No 133
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.44 E-value=0.0025 Score=63.75 Aligned_cols=142 Identities=16% Similarity=0.129 Sum_probs=80.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~ 253 (370)
+.|.|++...|+||||+++.|+.+|.++|.+|-.+=.-+.. . +...... +.-....+++-
T Consensus 2 ~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~------i--D~~~~~~------~~g~~~~nld~------ 61 (433)
T PRK13896 2 KGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDF------I--DPSHHEA------VAGRPSRTLDP------ 61 (433)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCC------C--CHHHHHH------HhCCCcccCCh------
Confidence 46889999999999999999999999999998655432110 0 0000000 00000011110
Q ss_pred CccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH----HHHHhhHhCCCeEEEEecCCcchHH--HHHHHHH
Q 017486 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI----QLTLCQVVPLTAAVIVTTPQKLAFI--DVAKGVR 327 (370)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~----~l~~~~~~~~d~viiV~~p~~~s~~--~~~~~~~ 327 (370)
-+ .++ +.+.+... +..+|++||....|+-+. ...++.... --+|+|+.....+.. .+...+.
T Consensus 62 ----~~-~~~---~~i~~~~~---~~~~d~~vIEG~gGl~dg~~~s~adla~~l~-~PviLVv~~~~g~~s~aa~l~g~~ 129 (433)
T PRK13896 62 ----WL-SGE---DGMRRNYY---RGEGDICVVEGVMGLYDGDVSSTAMVAEALD-LPVVLVVDAKAGMESVAATALGFR 129 (433)
T ss_pred ----hh-CCH---HHHHHHHH---hhcCCEEEEECCCccccCCCCCHHHHHHHHC-CCEEEEEcCcccHHHHHHHHHHHH
Confidence 01 111 22333322 245899999998776322 122222222 247778777666433 3344433
Q ss_pred HHHc---CCCCeEEEEEcCCccC
Q 017486 328 MFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 328 ~l~~---~~~~~~gvV~N~v~~~ 347 (370)
.+.+ .++++.|||+|++...
T Consensus 130 ~~~~~~~~~~~i~GvIlN~~~~~ 152 (433)
T PRK13896 130 AYADRIGRDIDVAGVIAQRAHGG 152 (433)
T ss_pred HHHHhccCCCcEEEEEEECCCcH
Confidence 3333 3799999999998863
No 134
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.44 E-value=0.0012 Score=62.02 Aligned_cols=69 Identities=16% Similarity=0.089 Sum_probs=47.5
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+.+.+.++|||+...........+..+|.+++|+.+...-.....++++.+...++|++ +++||.+..
T Consensus 68 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~i-ivvNK~D~~ 136 (267)
T cd04169 68 YRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPII-TFINKLDRE 136 (267)
T ss_pred eCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEE-EEEECCccC
Confidence 578899999998532212222333456799999988765434456677777777788865 789999853
No 135
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.40 E-value=0.0003 Score=63.53 Aligned_cols=99 Identities=22% Similarity=0.287 Sum_probs=62.7
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc-ccccCCCCCceeecccCCeeEEecCCCCccccc
Q 017486 181 CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LLEMNPEKRTIIPTEYLGVKLVSFGFSGQGRAI 259 (370)
Q Consensus 181 ~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~-~~~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~ 259 (370)
|-+|.||||-+..+...|+..|++|.+|.+||.+.+++.-+..+-. +... ..+. +.+.+ | .++...
T Consensus 9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~----edvm----~~~~L---G--PNg~l~ 75 (290)
T KOG1533|consen 9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITV----EDVM----EELGL---G--PNGALK 75 (290)
T ss_pred cCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccH----HHHH----HHhCC---C--CchhHH
Confidence 8899999999999999999999999999999999888765544321 0000 0000 00111 1 111111
Q ss_pred cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCC
Q 017486 260 MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGT 292 (370)
Q Consensus 260 ~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~ 292 (370)
---+.+...++.++..++.....|+|+|||.-.
T Consensus 76 yc~E~l~~~idwl~~~l~~~~~~Y~lFDcPGQV 108 (290)
T KOG1533|consen 76 YCMEYLEANIDWLLEKLKPLTDHYVLFDCPGQV 108 (290)
T ss_pred HHHHHHHhhhHHHHHHhhhccCcEEEEeCCCcE
Confidence 111223444566666666457899999999743
No 136
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.38 E-value=0.00068 Score=58.29 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=33.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+|+|+ |..|+||||++..|+..|.++|+||.+|..|..
T Consensus 1 vi~i~-G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~ 38 (155)
T TIGR00176 1 VLQIV-GPKNSGKTTLIERLVKALKARGYRVATIKHDHH 38 (155)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 35666 667999999999999999999999999998754
No 137
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.37 E-value=0.0011 Score=56.13 Aligned_cols=38 Identities=29% Similarity=0.320 Sum_probs=33.4
Q ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCC
Q 017486 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (370)
Q Consensus 178 v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~ 215 (370)
+..|+.|+||||++..++..++..|.+|++++.+....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 34489999999999999999999999999999987543
No 138
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.0003 Score=60.97 Aligned_cols=52 Identities=25% Similarity=0.235 Sum_probs=45.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCc
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 224 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~ 224 (370)
.+.+|-|| |-.|.||||+|..|...|-++|++|-++|.|--+..+..-+|..
T Consensus 22 ~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs 73 (197)
T COG0529 22 KGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFS 73 (197)
T ss_pred CCeEEEee-cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCC
Confidence 45688888 99999999999999999999999999999999887777666644
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.35 E-value=0.003 Score=53.92 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=45.6
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+++.++|||+......+.......+|.+++|..+...........+..+...+.+++ +|+|+++..
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~ 115 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFI-VALNKIDKP 115 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEEceecc
Confidence 46899999998532222222222345799999998876444455556667777788854 899999864
No 140
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.32 E-value=0.0045 Score=53.26 Aligned_cols=142 Identities=10% Similarity=0.061 Sum_probs=72.5
Q ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCCccc
Q 017486 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQGR 257 (370)
Q Consensus 178 v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~~~~ 257 (370)
+.+|.-|+||||+...+.... .|.++.++-.|........ ..... .+..++..+.. -.
T Consensus 4 ~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~------~~~~~------------~~~~v~~l~~G--Ci 61 (158)
T cd03112 4 VLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDN------QLVVD------------TDEEIIEMNNG--CI 61 (158)
T ss_pred EEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhH------HHHhC------------CCceEEEeCCC--Ee
Confidence 344888999999999887653 4888988877764332211 10000 11111111000 00
Q ss_pred cccCCchHHHHHHHHHHhc--CCCCCcEEEEcCCCCCChHHHHH--------hhHhCCCeEEEEecCCcchH--HHHHHH
Q 017486 258 AIMRGPMVSGVINQLLTTT--EWGELDYLVIDMPPGTGDIQLTL--------CQVVPLTAAVIVTTPQKLAF--IDVAKG 325 (370)
Q Consensus 258 ~~~~~~~~~~~l~~ll~~~--~~~~yD~VIIDtpp~~~~~~l~~--------~~~~~~d~viiV~~p~~~s~--~~~~~~ 325 (370)
--.....+...+.++++.+ ....+|+|+||+|+......+.- ......|.++.++++..... .....+
T Consensus 62 CC~~~~~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~ 141 (158)
T cd03112 62 CCTVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEA 141 (158)
T ss_pred EeeCchhHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHH
Confidence 0001123444454444332 12579999999986543222211 11223677888888654322 112333
Q ss_pred HHHHHcCCCCeEEEEEcCCc
Q 017486 326 VRMFSKLKVPCIAVVENMCH 345 (370)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~v~ 345 (370)
.++++..+. +|+|+++
T Consensus 142 ~~Qi~~ad~----ivlnk~d 157 (158)
T cd03112 142 QSQIAFADR----ILLNKTD 157 (158)
T ss_pred HHHHHHCCE----EEEeccc
Confidence 455554443 7999875
No 141
>PRK00089 era GTPase Era; Reviewed
Probab=97.32 E-value=0.0044 Score=58.70 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=43.6
Q ss_pred CCCcEEEEcCCCCCChH--------HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~--------~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.++++++|||+-.... ......+..+|.+++|++....-......+++.+...+.+++ +|+|+++..
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvi-lVlNKiDl~ 126 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVI-LVLNKIDLV 126 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEE-EEEECCcCC
Confidence 44789999998643211 111122345799999988776323344566677766677766 899999864
No 142
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.31 E-value=0.00055 Score=61.50 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=34.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.++.|+ |.+|+|||+++.+++...++.|.+|+.||++-
T Consensus 13 ~i~~i~-G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 13 TITQIY-GPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 466666 89999999999999999999999999999984
No 143
>PRK04296 thymidine kinase; Provisional
Probab=97.29 E-value=0.0091 Score=53.01 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=29.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEe
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllI 208 (370)
.++.++ |-.|.||||.+..++..++..|++|+++
T Consensus 3 ~i~lit-G~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIY-GAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 344444 8889999999999999999999999999
No 144
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.26 E-value=0.0017 Score=55.99 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
|+++++|+ |.-|+||||+.-.|...|.++|+||.+|=-....
T Consensus 1 m~~Il~iv-G~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIV-GYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEE-ecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence 57899999 6667799999999999999999999999766544
No 145
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.25 E-value=0.00031 Score=62.05 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=51.8
Q ss_pred CCCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+..+.+.+||||. ..+. ......+..+|.+++|+.+...-.....+.+..+...+++ +-+++|+++..
T Consensus 67 ~~~~~i~~iDtPG-~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~ 135 (188)
T PF00009_consen 67 ENNRKITLIDTPG-HEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI 135 (188)
T ss_dssp ESSEEEEEEEESS-SHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS
T ss_pred ccccceeeccccc-ccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch
Confidence 3678999999994 4332 2223334567999999999877777889999999999999 55999999964
No 146
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.24 E-value=0.0013 Score=60.10 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=33.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
|++|.|++. .|+||||++.+|+..|.++|+||.+|.-+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKERGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 468899966 59999999999999999999999999643
No 147
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.14 E-value=0.00062 Score=58.44 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=38.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCc
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT 219 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~ 219 (370)
.+|.++ |..|+||||+|..|...|...|++|.++|.|.-...+..
T Consensus 3 ~vIwlt-GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~ 47 (156)
T PF01583_consen 3 FVIWLT-GLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA 47 (156)
T ss_dssp EEEEEE-SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC
Confidence 467777 999999999999999999999999999999987765543
No 148
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.13 E-value=0.004 Score=52.31 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=42.9
Q ss_pred CCCcEEEEcCCCCCChHH--------HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ--------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~--------l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+++.|+|||+...... ........+|.+++|..+..........+.+.+.+.+.+++ +|+|+++..
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~ 118 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVI-LVVNKVDNI 118 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEE-EEEECcccC
Confidence 457899999996433211 11112345799999987764322233456677777777765 899999864
No 149
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.10 E-value=0.00099 Score=58.13 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=36.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+.+|.++ |-.|+||||++..||..+...|.++.++|.|...
T Consensus 4 g~~i~~~-G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFT-GLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 4577777 9999999999999999999889999999999654
No 150
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.10 E-value=0.0014 Score=55.39 Aligned_cols=43 Identities=30% Similarity=0.277 Sum_probs=33.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEE-EeeCCCCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG-IFDADVYGPSL 217 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVl-lID~D~~~~sl 217 (370)
++|+|++.| |+||||++..|...|.++|++|. +.|.|..++.+
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~ 44 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEI 44 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTC
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccCCCccc
Confidence 378888654 99999999999999999999999 99999855444
No 151
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.08 E-value=0.0032 Score=63.13 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=43.7
Q ss_pred CCCcEEEEcCCCCCCh---H-----HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~---~-----~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+++.|+|||+.... . ......+..+|.+++|++....-...-..+.+.+++.+.+++ +|+|+++..
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~D~~ 122 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVI-LVVNKVDGP 122 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCc
Confidence 4578999999853320 0 111222445799999988765322333456677777788866 899999953
No 152
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.05 E-value=0.0022 Score=68.49 Aligned_cols=69 Identities=14% Similarity=-0.021 Sum_probs=49.5
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|..|++.|+|||+-..........+..+|.+++|+.....-..+....++.+.+.+.+.+ +++|+++..
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~ 151 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRL 151 (720)
T ss_pred CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhcc
Confidence 578999999999643222223334566799999998765444556677777777788877 999999874
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.02 E-value=0.012 Score=52.15 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.+.|+|||+..............+|.+++|..............+..+...+++++ +|+|+++..
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~Dl~ 130 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRP 130 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 56789999998532212222222445799999988776444455555666666788865 789999963
No 154
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.0067 Score=51.95 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=33.1
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
++..|.|| +.+|+||||++..+|-.|.+.|++|.-+=+
T Consensus 4 ~~mki~IT-G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 4 MAMKIFIT-GRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred cceEEEEe-CCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 55688888 999999999999999999999999875543
No 155
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.98 E-value=0.0063 Score=55.51 Aligned_cols=68 Identities=16% Similarity=0.037 Sum_probs=48.8
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||.-..........+..+|.+++|+..........+..++.+.+.+++++ +|+|+++..
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~i-lviNKiD~~ 138 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPV-LVINKIDRL 138 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 46889999999643322333344556799999998776555566777777777788755 899999964
No 156
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.97 E-value=0.0058 Score=55.78 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=48.8
Q ss_pred CCCcEEEEcCCCCCChHHHH-HhhHh--CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLT-LCQVV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~-~~~~~--~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.+||||+ ..+..-. ...+. .+|.+++|+.++..-.....+.+..+...+++++ +|+|+++..
T Consensus 82 ~~~~i~liDtpG-~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~i-vvvNK~D~~ 151 (224)
T cd04165 82 SSKLVTFIDLAG-HERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVF-VVVTKIDLA 151 (224)
T ss_pred CCcEEEEEECCC-cHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE-EEEECcccc
Confidence 577899999995 4333222 22121 4699999998776666777888999999999964 899999963
No 157
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.96 E-value=0.0031 Score=62.54 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
|++|+|++.| |+||||+..+|...|.++|+||.+|=-|
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4699999655 9999999999999999999999996543
No 158
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.95 E-value=0.0073 Score=54.29 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=46.2
Q ss_pred CCCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
++...+.|+|||. ..+.. .....+..+|.+++|+...........+....+...+.+.+-+|+|+.+..
T Consensus 74 ~~~~~~~liDTpG-~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 74 TPKRKFIIADTPG-HEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred cCCceEEEEECCc-HHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 4567899999985 43321 122224467999999987765445555666666667766555789999964
No 159
>PRK00049 elongation factor Tu; Reviewed
Probab=96.92 E-value=0.0081 Score=59.62 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=49.5
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.+++||||. ..+.. .....+..+|.+++|+++..--....++.+..+...+++.+-+++|+.+..
T Consensus 73 ~~~~i~~iDtPG-~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 73 EKRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred CCeEEEEEECCC-HHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc
Confidence 456799999995 43221 122334457999999988765556677888888888999876789999864
No 160
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.92 E-value=0.0051 Score=52.13 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.+.+.++|||+ .... .........+|.+++|..............+..++..+.+.+-+|+|+++..
T Consensus 50 ~~~~~~~DtpG-~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~ 117 (164)
T cd04171 50 GKRLGFIDVPG-HEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV 117 (164)
T ss_pred CcEEEEEECCC-hHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence 45789999985 3322 1222223357999999887653333444444455555653345899999863
No 161
>PLN03127 Elongation factor Tu; Provisional
Probab=96.91 E-value=0.013 Score=59.14 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=50.1
Q ss_pred CCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.+++||||. ..+. .-....+..+|.+++|+.....-..+.+..+..+...+++.+-+++|+++..
T Consensus 122 ~~~~i~~iDtPG-h~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 122 AKRHYAHVDCPG-HADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred CCeEEEEEECCC-ccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence 556799999995 4332 2222334457999999998765556678888899999999776889999864
No 162
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.90 E-value=0.0071 Score=62.18 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=48.1
Q ss_pred CCCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+.+.+.|+|||+. .+. ......+..+|.+++|+.....-...+..+++.++..+.+++ +++|+.+..
T Consensus 77 ~~~~~inliDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pii-vviNKiD~~ 145 (527)
T TIGR00503 77 YRDCLVNLLDTPGH-EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIF-TFMNKLDRD 145 (527)
T ss_pred eCCeEEEEEECCCh-hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECcccc
Confidence 46789999999963 322 122233456799999998876544556777787777788855 899999863
No 163
>PRK12740 elongation factor G; Reviewed
Probab=96.90 E-value=0.0045 Score=65.69 Aligned_cols=69 Identities=20% Similarity=0.100 Sum_probs=50.0
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|..|++.+||||+...........+..+|.+++|+.+...........+..+...+.+.+ +|+||++..
T Consensus 57 ~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~~ 125 (668)
T PRK12740 57 WKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDRA 125 (668)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 478999999999643212222233556799999999877655666677778878888876 799999864
No 164
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.86 E-value=0.0013 Score=60.56 Aligned_cols=40 Identities=30% Similarity=0.310 Sum_probs=33.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh------------CCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------------MGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~------------~G~rVllID~D~~~ 214 (370)
.+++..+.+|+||||++.++|.+.|. .+.+|++++++-..
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~ 53 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPR 53 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCH
Confidence 35677799999999999999998873 45689999988644
No 165
>PRK08233 hypothetical protein; Provisional
Probab=96.85 E-value=0.005 Score=53.68 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=29.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.+|+|+ |-+|+||||+|..|+..|. +.+++..|.+..
T Consensus 4 ~iI~I~-G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~ 40 (182)
T PRK08233 4 KIITIA-AVSGGGKTTLTERLTHKLK--NSKALYFDRYDF 40 (182)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence 577777 5559999999999998874 347888887754
No 166
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.85 E-value=0.022 Score=53.45 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCCCCCh-HH----H---HHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGD-IQ----L---TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~-~~----l---~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.++++|||+-... .. + ....+..+|.+++|++++.....+ ..+++.+.+.+.+++ +|+|+++..
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~i-lV~NK~Dl~ 120 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVV-LTRNKLDNK 120 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEE-EEEECeeCC
Confidence 3456899999853321 00 0 112234579999998877643333 566777777788866 899999863
No 167
>PRK00007 elongation factor G; Reviewed
Probab=96.85 E-value=0.006 Score=64.94 Aligned_cols=68 Identities=24% Similarity=0.173 Sum_probs=51.5
Q ss_pred CCCCcEEEEcCCCCCChHHH-HHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l-~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|.++.+.+||||. ..+... ....+..+|.+++|+.+...-..+.++.+..+.+.+.+.+ +++|+.+..
T Consensus 72 ~~~~~~~liDTPG-~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~ 140 (693)
T PRK00007 72 WKDHRINIIDTPG-HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRT 140 (693)
T ss_pred ECCeEEEEEeCCC-cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 5678999999995 433222 2233456799999998776656677888999999999987 999999965
No 168
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.85 E-value=0.0021 Score=58.12 Aligned_cols=39 Identities=31% Similarity=0.447 Sum_probs=33.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.+....+.+|+||||++.++|..++..|.+|+++|++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 444444999999999999999999999999999998754
No 169
>PRK07667 uridine kinase; Provisional
Probab=96.85 E-value=0.0024 Score=56.87 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=35.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.+|++. |-+|+||||+|..|+..|.+.|.+|.+++.|-.
T Consensus 18 ~iIgI~-G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGID-GLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 477777 999999999999999999999999999999964
No 170
>COG1159 Era GTPase [General function prediction only]
Probab=96.84 E-value=0.0091 Score=56.01 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=74.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~ 254 (370)
.+++. |++.+||||+.-+| .|.|+.++.-=+|.. -. .+ .|+..
T Consensus 8 fVaIi-GrPNvGKSTLlN~l------~G~KisIvS~k~QTT-R~-----------------~I-----~GI~t------- 50 (298)
T COG1159 8 FVAII-GRPNVGKSTLLNAL------VGQKISIVSPKPQTT-RN-----------------RI-----RGIVT------- 50 (298)
T ss_pred EEEEE-cCCCCcHHHHHHHH------hcCceEeecCCcchh-hh-----------------he-----eEEEE-------
Confidence 67787 99999999997554 588998886554421 00 00 01110
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH-----H---HHhhHhCCCeEEEEecCCcchHHHHHHHH
Q 017486 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-----L---TLCQVVPLTAAVIVTTPQKLAFIDVAKGV 326 (370)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-----l---~~~~~~~~d~viiV~~p~~~s~~~~~~~~ 326 (370)
.+.+.+|+||||+-..... + ....+..+|.+++|++.+..--..-+..+
T Consensus 51 -----------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il 107 (298)
T COG1159 51 -----------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFIL 107 (298)
T ss_pred -----------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHH
Confidence 1678899999996442211 1 11223357999999988875445667778
Q ss_pred HHHHcCCCCeEEEEEcCCccCC
Q 017486 327 RMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 327 ~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+.+++.+.|++ +++|+++...
T Consensus 108 ~~lk~~~~pvi-l~iNKID~~~ 128 (298)
T COG1159 108 EQLKKTKTPVI-LVVNKIDKVK 128 (298)
T ss_pred HHHhhcCCCeE-EEEEccccCC
Confidence 88888667766 8899998643
No 171
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.80 E-value=0.0094 Score=62.14 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=51.0
Q ss_pred CCCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+.+.+.||||| |..+.. .....+..+|.+++|+.+..-....++..+..+.+.+++++ +|+||.+..
T Consensus 61 ~~~~kinlIDTP-Gh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD~~ 129 (594)
T TIGR01394 61 YNGTKINIVDTP-GHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDRP 129 (594)
T ss_pred ECCEEEEEEECC-CHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCCCC
Confidence 567889999998 454432 22223445799999998876666777888888888999975 899999963
No 172
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.80 E-value=0.0027 Score=60.99 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=33.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+++.|+ +..|+||||++.+++...++.|.+|++||+.-
T Consensus 56 ~iteI~-G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 56 RIIEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 456666 78999999999999999999999999999974
No 173
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.80 E-value=0.0052 Score=52.94 Aligned_cols=34 Identities=38% Similarity=0.620 Sum_probs=28.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
.|-|..+. |.||||.|..+|...+.+|+||++|=
T Consensus 4 ~i~vy~g~-G~Gkt~~a~g~~~ra~~~g~~v~~vQ 37 (159)
T cd00561 4 LIQVYTGN-GKGKTTAALGLALRALGHGYRVGVVQ 37 (159)
T ss_pred EEEEECCC-CCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45555344 99999999999999999999999953
No 174
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.80 E-value=0.0031 Score=55.34 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=74.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCCcc
Q 017486 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSGQG 256 (370)
Q Consensus 177 ~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~~~ 256 (370)
.+.+|-=|+||||+-.+|.. ....|.|+.+|-.|+..-.. +..+... .++.+......--
T Consensus 3 ~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~i------D~~~l~~------------~~~~v~~l~~gci- 62 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNI------DAELLQE------------DGVPVVELNNGCI- 62 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHH------HHHHHHT------------TT-EEEEECTTTE-
T ss_pred EEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccccccc------chhhhcc------------cceEEEEecCCCc-
Confidence 34457889999999999998 66789999999999864222 1111110 1222222111100
Q ss_pred ccccCCchHHHHHHHHHHhcCCC--CCcEEEEcCCCCCChHHH-----HHhhHhCCCeEEEEecCCcch-HHHH-HHHHH
Q 017486 257 RAIMRGPMVSGVINQLLTTTEWG--ELDYLVIDMPPGTGDIQL-----TLCQVVPLTAAVIVTTPQKLA-FIDV-AKGVR 327 (370)
Q Consensus 257 ~~~~~~~~~~~~l~~ll~~~~~~--~yD~VIIDtpp~~~~~~l-----~~~~~~~~d~viiV~~p~~~s-~~~~-~~~~~ 327 (370)
-......+...+.++. .+. .+|+|||-+........+ ........+.++.|+++.... .... .-+.+
T Consensus 63 -cc~~~~~~~~~l~~l~---~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~ 138 (178)
T PF02492_consen 63 -CCTLRDDLVEALRRLL---REYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLRE 138 (178)
T ss_dssp -SS-TTS-HHHHHHHHC---CCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHH
T ss_pred -ccccHHHHHHHHHHHH---HhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhh
Confidence 0001123444555554 224 689999999863333333 111123458888888875532 2222 22344
Q ss_pred HHHcCCCCeEEEEEcCCccC
Q 017486 328 MFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 328 ~l~~~~~~~~gvV~N~v~~~ 347 (370)
+++..++ +|+|+++..
T Consensus 139 Qi~~ADv----IvlnK~D~~ 154 (178)
T PF02492_consen 139 QIAFADV----IVLNKIDLV 154 (178)
T ss_dssp HHCT-SE----EEEE-GGGH
T ss_pred cchhcCE----EEEeccccC
Confidence 4544443 799998853
No 175
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=96.79 E-value=0.027 Score=60.75 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=49.9
Q ss_pred CCCcEEEEcCCCCCC-----h-HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCc
Q 017486 279 GELDYLVIDMPPGTG-----D-IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 345 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~-----~-~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~ 345 (370)
..+|++||.+..|+- + ....+..... --+|+|+....-++..+.-.++.++..|+++.|+|+|..+
T Consensus 183 ~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~-lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~ 254 (817)
T PLN02974 183 GGRVLALVETAGGVASPGPSGTLQCDLYRPLR-LPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG 254 (817)
T ss_pred ccCCeEEEECCCcccccCCCCCCHHHHHHHhC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc
Confidence 358999999998862 1 1111111122 2488899999999999999999999999999999999643
No 176
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.78 E-value=0.0072 Score=55.40 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=34.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.++.++ +..|+||||++.+++..+++.|.+++.++++...
T Consensus 25 ~~~~i~-G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~ 64 (230)
T PRK08533 25 SLILIE-GDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTT 64 (230)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCH
Confidence 355555 9999999999999999999999999999987643
No 177
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.74 E-value=0.015 Score=59.86 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=48.9
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+.+.+.++|||+...........+..+|.+++|+.+...-...++++++..+..++|++ +++|+.+..
T Consensus 76 ~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPii-v~iNK~D~~ 144 (526)
T PRK00741 76 YRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIF-TFINKLDRD 144 (526)
T ss_pred ECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEE-EEEECCccc
Confidence 467889999998532222222333556799999998766444556788888888899966 899999853
No 178
>PRK10218 GTP-binding protein; Provisional
Probab=96.73 E-value=0.025 Score=59.12 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=49.7
Q ss_pred CCCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+.+.+.|+|||. ..+. ......+..+|.+++|+....-...+.+..+..+...+++.+ +++|+++..
T Consensus 65 ~~~~~inliDTPG-~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~~ 133 (607)
T PRK10218 65 WNDYRINIVDTPG-HADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDRP 133 (607)
T ss_pred cCCEEEEEEECCC-cchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCCC
Confidence 4678999999985 4332 222233456799999998876555667777888888899976 899999964
No 179
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.71 E-value=0.02 Score=50.09 Aligned_cols=41 Identities=24% Similarity=0.384 Sum_probs=34.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
++++++|+ |..|+||||+...|...|...|+||..|=-+..
T Consensus 5 ~~~ii~iv-G~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 5 MIPLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred CceEEEEE-CCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 44577777 889999999999999999999999999976543
No 180
>PRK12739 elongation factor G; Reviewed
Probab=96.69 E-value=0.0085 Score=63.81 Aligned_cols=69 Identities=22% Similarity=0.060 Sum_probs=50.3
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+.+.+++||||.-..........+..+|.+++|+.....-....+..+..+.+.+.+.+ +++|+.+..
T Consensus 70 ~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~~ 138 (691)
T PRK12739 70 WKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDRI 138 (691)
T ss_pred ECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 577899999999532211222233445799999998776545566788888888899987 899999965
No 181
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.68 E-value=0.005 Score=49.97 Aligned_cols=40 Identities=28% Similarity=0.296 Sum_probs=33.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+.+.++ |..|+||||++..+|..+...++.++.++++...
T Consensus 3 ~~~~l~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEE-CCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 356666 7799999999999999998877789999998754
No 182
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.66 E-value=0.006 Score=55.44 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
..++.+.|+ |++|+||||+|.+|+ .++++++.|-.
T Consensus 10 ~~~~~~liy-G~~G~GKtt~a~~~~-------~~~~~~~~d~~ 44 (220)
T TIGR01618 10 RIPNMYLIY-GKPGTGKTSTIKYLP-------GKTLVLSFDMS 44 (220)
T ss_pred CCCcEEEEE-CCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence 334567777 999999999988873 47999999974
No 183
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.65 E-value=0.0075 Score=52.63 Aligned_cols=35 Identities=34% Similarity=0.567 Sum_probs=29.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
.|-+. +-.|.||||.|..+|...+.+|+||+++=.
T Consensus 7 li~v~-~g~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 7 IIIVH-TGNGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred EEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 34444 338999999999999999999999998844
No 184
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.63 E-value=0.0038 Score=56.73 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.++.++ |.+|+|||+++.++|...++.|.+|++||++
T Consensus 24 ~i~~i~-G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIY-GPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 355555 9999999999999999999999999999999
No 185
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.62 E-value=0.0033 Score=56.04 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=37.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~ 218 (370)
++.-.++-|-.|.||||.+.++-...-..|+++-+|.+||..-...
T Consensus 2 m~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~ 47 (273)
T KOG1534|consen 2 MRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFN 47 (273)
T ss_pred CceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhC
Confidence 3444455588899999999999999989999999999999765443
No 186
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.62 E-value=0.014 Score=47.04 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCCCCh---------HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcC
Q 017486 280 ELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENM 343 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~---------~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~ 343 (370)
...++++|||+-... ..........+|.+++|+..+...-....++++.++ .+.+ +-+|+|+
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 456789999974321 011223334579999999977733455677778886 4555 4488886
No 187
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.61 E-value=0.0039 Score=55.65 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=37.2
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
..+.+|.++ |..|+||||++..|+..|...|..++++|.|...
T Consensus 22 ~~~~~i~i~-G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFT-GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 345677777 8899999999999999998889999999998754
No 188
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.61 E-value=0.039 Score=46.98 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
..+.+.++|+|.......+.......+|.+++|+..... ++......+..+.+ .+.|++ +|+|+++..
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~D~~ 120 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLL-ILANKQDLP 120 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEE-EEEEccccc
Confidence 457899999984322222222224457888888876543 34444444443332 356655 899999853
No 189
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=96.61 E-value=0.022 Score=49.12 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=43.6
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
+.+.+.|+|+|.......+.......+|.+++|.+.... ++..+...+..+.+ .+.|++ +|.|+.+..
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pil-iv~NK~Dl~ 113 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPIL-VLANKQDKK 113 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEE-EEEeCCCCc
Confidence 457889999986432222322334567999998876553 56666666665543 255654 899999854
No 190
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.56 E-value=0.006 Score=55.85 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.++.++ +..|+|||+++.++++..+++|.+|++++++-
T Consensus 26 ~~~~i~-G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 26 SLILIE-GDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cEEEEE-CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 355555 99999999999999998888999999999974
No 191
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.51 E-value=0.02 Score=47.33 Aligned_cols=68 Identities=15% Similarity=0.044 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCCChH-------HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPGTGDI-------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~-------~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.++++++|+|+..... .........+|.+++|+.+..............+...+.+++ +|+|+++...
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~ 118 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVL-LVLNKIDLLP 118 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEE-EEEEccccCC
Confidence 6789999999632211 122222445788898888777655554445666666777765 9999988643
No 192
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.51 E-value=0.0077 Score=54.61 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=33.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCC------CcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMG------ARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G------~rVllID~D~ 212 (370)
.++.++ +.+|+|||+++.++|...+..| .+|+.||.+-
T Consensus 20 ~v~~I~-G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 20 RITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cEEEEe-CCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 466666 8999999999999999988777 8999999974
No 193
>PF13479 AAA_24: AAA domain
Probab=96.50 E-value=0.011 Score=53.56 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=26.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.++|+ |..|+||||++..+ .++++||+|-..
T Consensus 5 ~~lIy-G~~G~GKTt~a~~~--------~k~l~id~E~g~ 35 (213)
T PF13479_consen 5 KILIY-GPPGSGKTTLAASL--------PKPLFIDTENGS 35 (213)
T ss_pred EEEEE-CCCCCCHHHHHHhC--------CCeEEEEeCCCc
Confidence 56666 99999999998877 699999999754
No 194
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.49 E-value=0.0059 Score=58.69 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+++-|+ +.+|+||||++.+++...++.|.++++||+.-
T Consensus 56 ~iteI~-Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 56 RIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 455555 78999999999999999999999999999864
No 195
>CHL00071 tufA elongation factor Tu
Probab=96.49 E-value=0.034 Score=55.48 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=49.9
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.+++||||. ..+.. .....+..+|.+++|+.+...-....+..+..+...+++.+-+++|+.+..
T Consensus 73 ~~~~~~~iDtPG-h~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 73 ENRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV 141 (409)
T ss_pred CCeEEEEEECCC-hHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC
Confidence 566789999995 43321 122334457999999988766556777888888888998776899999864
No 196
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.48 E-value=0.017 Score=61.52 Aligned_cols=69 Identities=19% Similarity=0.079 Sum_probs=49.0
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+++.+.++|||.-..........+..+|.+++|+.....-.......+..+.+.+.+++ +++||++..
T Consensus 72 ~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~~ 140 (689)
T TIGR00484 72 WKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDKT 140 (689)
T ss_pred ECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCCC
Confidence 567899999999533222222233445799999998766444556677788888899976 899999964
No 197
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=96.43 E-value=0.019 Score=50.64 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=40.4
Q ss_pred CCCcEEEEcCCCCCChHHHHH-hhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTL-CQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~-~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.+.++|||. ........ .....+|.+++|+...........+.+......+.+++ +|+|+.+..
T Consensus 66 ~~~~~~i~DtpG-~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~i-iv~NK~Dl~ 133 (192)
T cd01889 66 ENLQITLVDCPG-HASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLI-VVLNKIDLI 133 (192)
T ss_pred cCceEEEEECCC-cHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEE-EEEECcccC
Confidence 478999999985 43321111 22234689999988765322222333444444577755 899999864
No 198
>PRK12736 elongation factor Tu; Reviewed
Probab=96.42 E-value=0.028 Score=55.81 Aligned_cols=68 Identities=15% Similarity=0.234 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.+.+||||. ..+.. .....+..+|.+++|+....--.......+..+...+++.+-+++|+.+..
T Consensus 73 ~~~~i~~iDtPG-h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 73 EKRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred CCcEEEEEECCC-HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc
Confidence 456889999995 43321 222233457999999988765556677788888888998777899999864
No 199
>PRK06696 uridine kinase; Validated
Probab=96.41 E-value=0.0061 Score=55.48 Aligned_cols=40 Identities=28% Similarity=0.171 Sum_probs=33.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+|+|. |.+|+||||+|..|+..|...|.+|+.+-+|-..
T Consensus 23 ~iI~I~-G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAID-GITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 366666 9999999999999999999889999997776543
No 200
>PHA02542 41 41 helicase; Provisional
Probab=96.40 E-value=0.0048 Score=62.52 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=37.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl 217 (370)
.+.+.++.+|+||||++.|+|...++.|++|++++++....-+
T Consensus 191 ~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 191 TLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred cEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 5666679999999999999999999999999999999876433
No 201
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.39 E-value=0.032 Score=48.18 Aligned_cols=67 Identities=12% Similarity=0.012 Sum_probs=40.4
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||...............+|.+++|...... +.... ..+..+...+.+++ +|+|+.+..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~ii-iv~NK~Dl~ 132 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALENNLEII-PVINKIDLP 132 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHHcCCCEE-EEEECCCCC
Confidence 467789999985332222222334457999999887653 22222 22333444577754 899999963
No 202
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.38 E-value=0.0051 Score=53.85 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=33.2
Q ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 178 v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+..|.+|+|||+++.+++...++.|.+|+++.++...
T Consensus 3 li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 4559999999999999999999999999999998643
No 203
>PRK06762 hypothetical protein; Provisional
Probab=96.36 E-value=0.0049 Score=53.16 Aligned_cols=39 Identities=26% Similarity=0.431 Sum_probs=31.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
|+++|.++ |..|+||||+|..|+..+ |..+.+++.|...
T Consensus 1 m~~li~i~-G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r 39 (166)
T PRK06762 1 MTTLIIIR-GNSGSGKTTIAKQLQERL---GRGTLLVSQDVVR 39 (166)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEecHHHHH
Confidence 45567666 999999999999999888 4568888887644
No 204
>PRK12735 elongation factor Tu; Reviewed
Probab=96.36 E-value=0.034 Score=55.23 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=48.3
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+...++++|||. ..+.. .....+..+|.+++|+.+...-.....+.+..+...+++.+-+++|+.+..
T Consensus 73 ~~~~i~~iDtPG-h~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 73 ANRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred CCcEEEEEECCC-HHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc
Confidence 456789999995 43322 222334457999999988765456667788888888998776789999864
No 205
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.35 E-value=0.065 Score=47.62 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=37.8
Q ss_pred CCcEEEEcCCCCCC---hH-----HHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTG---DI-----QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~---~~-----~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.++|+|+|+-.. .. .........+|.+++|...... +........+.+... +.+ +-+|+|+++..
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~-viiV~NK~Dl~ 166 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIP-MILVLNKIDLL 166 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCC-EEEEEEccccC
Confidence 34789999985321 10 0011113357888888876543 333444444555443 445 44899999964
No 206
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.33 E-value=0.012 Score=53.31 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=43.7
Q ss_pred CCCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcc-------hHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKL-------AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~-------s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
++.+.+.++|||. ..+. ......+..+|.+++|+..... ....+.+.+..+...+.+.+-+++|+.+..
T Consensus 74 ~~~~~i~liDtpG-~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 74 TEKYRFTILDAPG-HRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred eCCeEEEEEECCC-hHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 4678899999984 3222 1222223457999999887652 122344555555666765566899999864
No 207
>PRK05973 replicative DNA helicase; Provisional
Probab=96.32 E-value=0.0055 Score=56.34 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=34.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.+.+.++.+|+|||+++.++|...+++|++|+++.++..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 455556999999999999999999999999999999875
No 208
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.31 E-value=0.0089 Score=51.57 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=35.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
|++|+|+ +..|+||||++..|...|...|++|..|-.|...
T Consensus 1 m~vi~i~-G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFV-GYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 4688888 5569999999999999999999999999887654
No 209
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.30 E-value=0.043 Score=54.45 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.+.|+|||. ..+.. ........+|.+++|+....--.....+.+..+...+++.+-+++|+.+..
T Consensus 73 ~~~~~~liDtpG-h~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 73 ENRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred CCEEEEEEECCc-hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC
Confidence 456789999994 43322 222223456999999988765556677888888888998776789999864
No 210
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.28 E-value=0.0057 Score=53.78 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=33.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
|+|. |..|+||||+|..|+..+...|.++.+|..|-..
T Consensus 2 i~i~-G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 5555 8999999999999999999999999999998544
No 211
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.27 E-value=0.035 Score=55.54 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=44.6
Q ss_pred CCCcEEEEcCCCCCCh-----H---HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGD-----I---QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~-----~---~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
....+.|+|||....+ . ......+..+|.+++|+++...-......+.+.+++.+.+++ +|+|+++...
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pii-lVvNK~D~~~ 121 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVI-LVANKIDGKK 121 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEE-EEEECccCCc
Confidence 4556899999853211 0 112222345799999998765433344567777888888866 8999999643
No 212
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.26 E-value=0.0056 Score=56.61 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=30.6
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 177 ~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
.+..|++|+|||+++.++|..+.+.|++|+++++
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 4555999999999999999999999999999964
No 213
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.25 E-value=0.0061 Score=51.88 Aligned_cols=36 Identities=33% Similarity=0.322 Sum_probs=32.2
Q ss_pred EeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 179 SSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 179 ~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
..|..|+||||+|..|+..+...|.++.++|.|..+
T Consensus 4 i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 349999999999999999999889999999988654
No 214
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.25 E-value=0.04 Score=45.79 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=45.3
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcCC---CCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK---VPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~---~~~~gvV~N~v~~~ 347 (370)
..+++.++|+|+...........+..+|.+++|..+.. .+...+...+..+.... .++ -+|.|+++..
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~ 118 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPI-ILVGNKIDLE 118 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEEccccc
Confidence 45789999998643322233333445799998887755 45677777777776644 554 5899999874
No 215
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.23 E-value=0.064 Score=48.89 Aligned_cols=65 Identities=6% Similarity=-0.018 Sum_probs=42.4
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
...+.++|||... . ........+|.+++|+.....-......+++.+...+.+.+-+|+|+.+.-
T Consensus 82 ~~~i~~vDtPg~~-~--~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 82 KRRLTFIECPNDI-N--AMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLF 146 (225)
T ss_pred CceEEEEeCCchH-H--HHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccC
Confidence 3457889998533 1 112223446888888877654444556777888777887655689998863
No 216
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.22 E-value=0.015 Score=57.10 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=37.7
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
..+++|.|+ +..|+||||+...|...|.++|++|.+|=-|...
T Consensus 203 ~~~~~~~~~-g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~ 245 (366)
T PRK14489 203 GAPPLLGVV-GYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHR 245 (366)
T ss_pred CCccEEEEe-cCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence 356799999 7889999999999999999999999999876543
No 217
>PLN03126 Elongation factor Tu; Provisional
Probab=96.21 E-value=0.048 Score=55.43 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=49.4
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.+.+||+|. ..+.. -....+..+|.+++|+.+..--....++.+..+...+++.+-+++|+.+..
T Consensus 142 ~~~~i~liDtPG-h~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 142 ENRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210 (478)
T ss_pred CCcEEEEEECCC-HHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 466889999994 43321 222334457999999987766566778888888888998777899999864
No 218
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.20 E-value=0.023 Score=50.36 Aligned_cols=35 Identities=34% Similarity=0.554 Sum_probs=30.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
.|.|. +-.|.||||.|..+|...+..|+||++|=.
T Consensus 24 ~v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQF 58 (191)
T PRK05986 24 LLIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQF 58 (191)
T ss_pred eEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45555 677899999999999999999999999865
No 219
>PRK15453 phosphoribulokinase; Provisional
Probab=96.20 E-value=0.0089 Score=56.13 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=37.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~ 215 (370)
..+|+|+ |-.|+||||++..|+..|.+.|.++.+|+.|-+..
T Consensus 5 ~piI~It-G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 5 HPIIAVT-GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 3588888 88999999999999999988888999999998663
No 220
>PRK13351 elongation factor G; Reviewed
Probab=96.20 E-value=0.026 Score=60.07 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|..+.+.++|||+-..........+..+|.+++|+.............++.+.+.+++++ +|+|+.+..
T Consensus 70 ~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~~ 138 (687)
T PRK13351 70 WDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDRV 138 (687)
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCCC
Confidence 467889999998532222222333455799999998876555566777788888889876 899999864
No 221
>PRK15494 era GTPase Era; Provisional
Probab=96.20 E-value=0.074 Score=51.66 Aligned_cols=67 Identities=12% Similarity=0.175 Sum_probs=40.7
Q ss_pred CCCcEEEEcCCCCCCh-----HHH---HHhhHhCCCeEEEEecCCcchHHHH-HHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGD-----IQL---TLCQVVPLTAAVIVTTPQKLAFIDV-AKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~-----~~l---~~~~~~~~d~viiV~~p~~~s~~~~-~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.++++|||+.... ..+ ....+..+|.+++|++... ++... ..+++.+++.+.+.+ +|+|+++..
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl~ 173 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDIE 173 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcCc
Confidence 4457899999864221 011 1111345799998887654 22233 456677777777766 789999863
No 222
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.19 E-value=0.0085 Score=54.66 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=31.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC------CCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~------G~rVllID~D~~ 213 (370)
.++.++ |..|+|||+++.+++...... +.+|+.||++..
T Consensus 20 ~i~~i~-G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 20 SITEIF-GEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence 456665 999999999999999775543 479999999863
No 223
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.18 E-value=0.0093 Score=60.81 Aligned_cols=40 Identities=13% Similarity=0.171 Sum_probs=35.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+.+.++-.|+||||++.+++...+++|.+|+++-.+-..
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESR 303 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCH
Confidence 5666669999999999999999999999999999988743
No 224
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.17 E-value=0.089 Score=44.42 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=42.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.++|+|+.-.........+..+|.+++|..... .+...+.+.+..+.+. +.+++ +|.|+.+..
T Consensus 48 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~piv-vv~nK~D~~ 118 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIM-LVGNKSDLE 118 (164)
T ss_pred EEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEEchhcc
Confidence 3578899998643222222333445799988887655 4566666666665543 45544 889998853
No 225
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.13 E-value=0.0075 Score=48.85 Aligned_cols=31 Identities=42% Similarity=0.441 Sum_probs=24.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
|.|+ |..|+||||+|..||..+ |..++-+|.
T Consensus 2 I~I~-G~~gsGKST~a~~La~~~---~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIIS-GPPGSGKSTLAKELAERL---GFPVISMDD 32 (121)
T ss_dssp EEEE-ESTTSSHHHHHHHHHHHH---TCEEEEEHH
T ss_pred EEEE-CCCCCCHHHHHHHHHHHH---CCeEEEecc
Confidence 4555 999999999999999877 666654444
No 226
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.13 E-value=0.057 Score=54.92 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=43.7
Q ss_pred CCCcEEEEcCCCCCChH--------HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~--------~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
....+.|+|||+-..+. ......+..+|.+++|+.........-..+.+.+++.+.+++ +|.|+++..
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pii-lV~NK~Dl~ 159 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVI-LAANKVDDE 159 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCC
Confidence 45678999998632110 011122345799999988765422233566777777788866 899999963
No 227
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.13 E-value=0.058 Score=57.95 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=47.1
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||.-.....+.......+|.+++|+..+......+...+..+...+++++ +++|+++..
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiI-VviNKiDl~ 402 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPII-VAINKIDKP 402 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEE-EEEECcccc
Confidence 44678999999532222232223445699999998776555666777778888899955 899999863
No 228
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.12 E-value=0.019 Score=52.74 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=33.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.++.|+ +-+|+|||+++.+++...+++|.++++|.++..
T Consensus 22 s~~lI~-G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 22 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 355555 999999999999999988889999999999864
No 229
>PTZ00416 elongation factor 2; Provisional
Probab=96.09 E-value=0.03 Score=60.84 Aligned_cols=68 Identities=10% Similarity=0.003 Sum_probs=49.8
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..|-+.++|||+-.....-....+..+|.+++|+.+..--....+.+++.+.+.+.+++ +++|+.+..
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~~ 157 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDRA 157 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhhh
Confidence 35678999999543322222333556799999998877656667888889888888876 889999875
No 230
>PRK09354 recA recombinase A; Provisional
Probab=96.07 E-value=0.015 Score=56.49 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+++-|+ +..|+||||++.+++...++.|.+++.||+.-
T Consensus 61 ~IteI~-G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 61 RIVEIY-GPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 455555 78999999999999999999999999999975
No 231
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=96.06 E-value=0.044 Score=52.51 Aligned_cols=42 Identities=36% Similarity=0.476 Sum_probs=37.0
Q ss_pred CeEEEEEeCC-CCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~k-GGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
..+|.|-+-. ||+|||-++..||..|.++|++|.+|-=-..+
T Consensus 28 vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 28 VPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred CCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 3589998887 99999999999999999999999999865544
No 232
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.05 E-value=0.088 Score=44.85 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=43.9
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC--CCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~v~~ 346 (370)
..+++-|+|+|+.-....+....+..+|.+++|...+. .+...+...++.+.+. +.+++ +|.|+.+.
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~i-vv~nK~Dl 116 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCI-VVANKIDL 116 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEE-EEEECccC
Confidence 45678899998543222222222445799999888654 4566677777777654 56655 99999985
No 233
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.05 E-value=0.075 Score=47.49 Aligned_cols=66 Identities=11% Similarity=0.146 Sum_probs=41.3
Q ss_pred CcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+-+.|+|||+ ..+. ......+..+|.+++|+..... ........+..+...+.+.+-+|+|+.+..
T Consensus 83 ~~i~~iDtPG-~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 83 RHVSFVDCPG-HEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLV 150 (203)
T ss_pred cEEEEEECCC-hHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 6789999985 3222 1222223456999999887752 222344455566666665455899999964
No 234
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.05 E-value=0.016 Score=49.06 Aligned_cols=54 Identities=26% Similarity=0.277 Sum_probs=45.1
Q ss_pred ccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCC
Q 017486 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSP 223 (370)
Q Consensus 169 ~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~ 223 (370)
++..+-+|-+| +-.|.||||+|..|.++|-++|+-.-.+|.|--+..+-.-++.
T Consensus 27 ~~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F 80 (207)
T KOG0635|consen 27 LKQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGF 80 (207)
T ss_pred hcCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCc
Confidence 44456689999 8889999999999999999999999999999877666554443
No 235
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.04 E-value=0.07 Score=45.00 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+...........+..+|.++++.... ..++.........+.+ .+.++ -+|.|+++..
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~D~~ 118 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPL-LLVGNKCDLE 118 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEccccc
Confidence 3567899999864332223223344567777776543 3455556666555554 35664 4899999863
No 236
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=96.01 E-value=0.13 Score=43.75 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCCC-----hH---HHHHhhH-hCCCeEEEEecCCcc---hHHHHHHHHHHHHcC--CCCeEEEEEcCC
Q 017486 279 GELDYLVIDMPPGTG-----DI---QLTLCQV-VPLTAAVIVTTPQKL---AFIDVAKGVRMFSKL--KVPCIAVVENMC 344 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~-----~~---~l~~~~~-~~~d~viiV~~p~~~---s~~~~~~~~~~l~~~--~~~~~gvV~N~v 344 (370)
..+.+.|+|||+... .. ....... ...|.+++|..+... +.......++.+.+. +.+++ +|+|++
T Consensus 45 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvi-lv~NK~ 123 (168)
T cd01897 45 KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVI-VVLNKI 123 (168)
T ss_pred CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeE-EEEEcc
Confidence 346789999985321 00 0111111 124777888766542 335555566666554 56655 999999
Q ss_pred ccC
Q 017486 345 HFD 347 (370)
Q Consensus 345 ~~~ 347 (370)
+..
T Consensus 124 Dl~ 126 (168)
T cd01897 124 DLL 126 (168)
T ss_pred ccC
Confidence 863
No 237
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.99 E-value=0.0057 Score=55.61 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=31.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~~ 214 (370)
++.++ |-.|+|||+++.+++...+++ |.+|++|.++...
T Consensus 21 ~~li~-G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 21 VVLIS-GPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred EEEEE-eCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence 55555 999999999999999999988 9999999998643
No 238
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=95.97 E-value=0.18 Score=42.86 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=41.1
Q ss_pred CcEEEEcCCCCCC------h-HHHHHhhHhCCCeEEEEecCCcc--hHHHHHHHHHHHHcC-----CCCeEEEEEcCCcc
Q 017486 281 LDYLVIDMPPGTG------D-IQLTLCQVVPLTAAVIVTTPQKL--AFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (370)
Q Consensus 281 yD~VIIDtpp~~~------~-~~l~~~~~~~~d~viiV~~p~~~--s~~~~~~~~~~l~~~-----~~~~~gvV~N~v~~ 346 (370)
..+.++|||.-.. . .......+..+|.+++|...... +........+.+.+. +.+++ +|+|+++.
T Consensus 48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~i-vv~NK~Dl 126 (170)
T cd01898 48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRI-VVLNKIDL 126 (170)
T ss_pred CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccE-EEEEchhc
Confidence 3789999996321 0 01111223347999999887764 566666666666543 44544 89999986
Q ss_pred C
Q 017486 347 D 347 (370)
Q Consensus 347 ~ 347 (370)
.
T Consensus 127 ~ 127 (170)
T cd01898 127 L 127 (170)
T ss_pred C
Confidence 3
No 239
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=95.97 E-value=0.033 Score=53.73 Aligned_cols=41 Identities=29% Similarity=0.506 Sum_probs=35.6
Q ss_pred eEEEEEeC-CCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSSC-KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~-kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+|.|-+- .||+|||+++..||..|.++|+||.+|-=...+
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg~ 91 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYGG 91 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCCC
Confidence 48888554 699999999999999999999999999876644
No 240
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.95 E-value=0.01 Score=52.25 Aligned_cols=39 Identities=28% Similarity=0.284 Sum_probs=29.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHh----------CCCcEEEeeCCCCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAG----------MGARVGIFDADVYG 214 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~----------~G~rVllID~D~~~ 214 (370)
+.+..+.+|+||||++.++|..++. .+.+|++|+++...
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 4555599999999999999999997 57899999999753
No 241
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.95 E-value=0.0087 Score=55.41 Aligned_cols=36 Identities=33% Similarity=0.369 Sum_probs=32.2
Q ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 178 v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+..|.+|+||||+|..||..+...|++|.++|.|.-
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 445999999999999999999988999999988854
No 242
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=95.94 E-value=0.084 Score=55.05 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=44.6
Q ss_pred cEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 282 DYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 282 D~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
.+.|+|||+-.....+.......+|.+++|+..+.....+....+..+...++|++ +++|+++.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiI-VviNKiDl 199 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPII-VAINKIDK 199 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEE-EEEECccc
Confidence 78999998532222222222445799999998776555666677777777888855 99999986
No 243
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.94 E-value=0.14 Score=43.97 Aligned_cols=69 Identities=7% Similarity=0.026 Sum_probs=42.5
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc--CCCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK--LKVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~--~~~~~~gvV~N~v~~~~ 348 (370)
+.+.+.++|+|.......+.......+|.+++|.+... .++..++..+..+.+ .+.+++ +|.|+.+...
T Consensus 42 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~pii-lv~NK~Dl~~ 113 (164)
T cd04162 42 QDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLV-VLANKQDLPA 113 (164)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEE-EEEeCcCCcC
Confidence 45678999998543322232233456799998887654 345555554544432 356655 9999998643
No 244
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.93 E-value=0.14 Score=43.38 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCCCCh---------H--HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGD---------I--QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~---------~--~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..++.++|+|+.... . .........+|.+++|+.............+..+...+.+++ +|+|+++..
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~i-iv~nK~Dl~ 126 (174)
T cd01895 49 GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALV-IVVNKWDLV 126 (174)
T ss_pred CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEE-EEEeccccC
Confidence 456899999863211 0 011112335688998887655433444456666666677755 899998753
No 245
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.91 E-value=0.012 Score=54.80 Aligned_cols=40 Identities=23% Similarity=0.407 Sum_probs=35.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~ 215 (370)
+|+|+ |-.|+||||++..|+..|.+.|.++.+|+.|.+..
T Consensus 1 IIgIt-G~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 47776 88899999999999999999999999999998764
No 246
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.88 E-value=0.017 Score=50.71 Aligned_cols=43 Identities=30% Similarity=0.357 Sum_probs=35.6
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.++.+|.++ |..|+||||++..|+..+...|..++++|.|.-.
T Consensus 16 ~~~~~i~i~-G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLT-GLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 344566666 8899999999999999998888889999988644
No 247
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.88 E-value=0.097 Score=50.40 Aligned_cols=146 Identities=13% Similarity=0.146 Sum_probs=73.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~ 254 (370)
+..++ |-=|+||||+--++... ..|+|+.+|-.|+..-++. ..+.... ...+.... .|. +++.
T Consensus 6 v~ilt-GFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v~iD------~~ll~~~--~~~v~eL~-~GC--iCCs--- 68 (318)
T PRK11537 6 VTLLT-GFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVD------DQLIGDR--ATQIKTLT-NGC--ICCS--- 68 (318)
T ss_pred EEEEE-ECCCCCHHHHHHHHHhc--ccCCcccccccCcCCcccc------HHHHhCc--CceEEEEC-CCE--EEEc---
Confidence 44444 88899999999998753 4689999999988643332 1111100 00111100 111 1111
Q ss_pred ccccccCCchHHHHHHHHHHhcCCC--CCcEEEEcCCCCCChHHHHHh--------hHhCCCeEEEEecCCcchH--HHH
Q 017486 255 QGRAIMRGPMVSGVINQLLTTTEWG--ELDYLVIDMPPGTGDIQLTLC--------QVVPLTAAVIVTTPQKLAF--IDV 322 (370)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~--~yD~VIIDtpp~~~~~~l~~~--------~~~~~d~viiV~~p~~~s~--~~~ 322 (370)
....+...+.++++....+ .+|+|||.+........+... .....+.++.|+++..... ...
T Consensus 69 ------~~~~l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~ 142 (318)
T PRK11537 69 ------RSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF 142 (318)
T ss_pred ------cCchHHHHHHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcccc
Confidence 1233455566666433212 599999998753332222111 1112466777777654321 111
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 323 AKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 323 ~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.-+.+++...+. +|+||++..
T Consensus 143 ~~~~~Qi~~AD~----IvlnK~Dl~ 163 (318)
T PRK11537 143 TIAQSQVGYADR----ILLTKTDVA 163 (318)
T ss_pred HHHHHHHHhCCE----EEEeccccC
Confidence 112233433333 788887753
No 248
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.86 E-value=0.018 Score=51.67 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+.+|+++ |..|+||||++..|+..+ .+.++.+++.|...
T Consensus 6 ~~iI~I~-G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~~ 44 (209)
T PRK05480 6 PIIIGIA-GGSGSGKTTVASTIYEEL--GDESIAVIPQDSYY 44 (209)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHh--CCCceEEEeCCccc
Confidence 4577777 999999999999999988 45689999998653
No 249
>PRK04328 hypothetical protein; Provisional
Probab=95.84 E-value=0.018 Score=53.36 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=33.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.++.|+ +-+|+|||+++.+++...++.|.++++|+++..
T Consensus 24 s~ili~-G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 24 NVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred cEEEEE-cCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 455555 899999999999999998888999999999764
No 250
>PF13245 AAA_19: Part of AAA domain
Probab=95.83 E-value=0.018 Score=43.24 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=29.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC----CCcEEEeeCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFDAD 211 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~----G~rVllID~D 211 (370)
+.+..+-+|+|||+++++++..+... |++|+++-..
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 45556999999999999999888865 8899988543
No 251
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.82 E-value=0.014 Score=54.55 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=33.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.+.+|.+|+|||+++.++|...+++|.+|++++++.
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 45555599999999999999999999999999999984
No 252
>PHA00729 NTP-binding motif containing protein
Probab=95.79 E-value=0.011 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLA 199 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA 199 (370)
.|.++ |.+|+||||+|..||..+.
T Consensus 19 nIlIt-G~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIF-GKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHH
Confidence 45566 8999999999999999875
No 253
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.019 Score=53.76 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=53.8
Q ss_pred CCCcEEEEcCCCCCChHHHH-HhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCCCC
Q 017486 279 GELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDADG 350 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~-~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~~~ 350 (370)
..-.|--+||| |..|..-. +.....+|+.|+|+.+..-.+-+++.-+=..++.|++.+-+++|+++...+.
T Consensus 73 ~~rhyahVDcP-GHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 73 ANRHYAHVDCP-GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred CCceEEeccCC-ChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcH
Confidence 44568889998 45543322 2223346999999998888888888888888999999999999999986543
No 254
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.77 E-value=0.08 Score=47.37 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=30.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.|+++ |..|+||||+...+...+... .++.++..|...
T Consensus 3 ~i~i~-G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~ 40 (199)
T TIGR00101 3 KIGVA-GPVGSGKTALIEALTRALRQK-YQLAVITNDIYT 40 (199)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCC
Confidence 56777 899999999999998887654 568888888754
No 255
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.013 Score=57.33 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=32.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+...++-+|.||||+-.++|..+|+++ +||+|-..-
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEE 130 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEE 130 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCc
Confidence 4445569999999999999999999998 999998875
No 256
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.76 E-value=0.16 Score=43.78 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.++|+|+......+.......+|.+++|...... ++......+..+.+ .+.+++ +|.|+++..
T Consensus 57 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~ 128 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLL-ILANKQDLP 128 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECcccc
Confidence 46789999985322122222224457888888876654 45555444433321 355555 899999863
No 257
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.75 E-value=0.21 Score=42.76 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=35.9
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHH----HcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF----SKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l----~~~~~~~~gvV~N~v~~~ 347 (370)
..+++.++|+|............+..+|.+++|.+... .++......+..+ ...+.+++ ++.|+++..
T Consensus 56 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~ 128 (173)
T cd04155 56 DGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVL-VFANKQDLA 128 (173)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECCCCc
Confidence 34678899987532211111111234677888876543 2344444333332 22356654 678998853
No 258
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.74 E-value=0.027 Score=57.76 Aligned_cols=40 Identities=15% Similarity=0.029 Sum_probs=34.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~~ 214 (370)
.++.++ +-+|+|||+++.+++...+++ |.+|++|.++...
T Consensus 32 s~~li~-G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~ 72 (509)
T PRK09302 32 RPTLVS-GTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESP 72 (509)
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCH
Confidence 456665 999999999999999988877 9999999998754
No 259
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.73 E-value=0.012 Score=56.96 Aligned_cols=39 Identities=33% Similarity=0.284 Sum_probs=34.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCCCC
Q 017486 177 AVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGP 215 (370)
Q Consensus 177 ~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~~~ 215 (370)
.+..|-.|+||||++..|+..|. ..|++|.++|.|-.-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 46669999999999999999998 5899999999997543
No 260
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.71 E-value=0.075 Score=44.80 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+++.|+|+|............+..+|.+++|..+... ++..+...+..+.+ .+.+++ +|.||++..
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~ 113 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLL-IFANKQDLP 113 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE-EEeeccCCc
Confidence 56899999996433222222224457999999888765 45555544443322 345544 789999864
No 261
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.69 E-value=0.032 Score=52.75 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
..+|.++ +..|+||||+...|...|... +++.+|+.|...
T Consensus 104 ~~~v~l~-G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t 143 (290)
T PRK10463 104 QLVLNLV-SSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQT 143 (290)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCc
Confidence 3578888 889999999999999988654 589999999754
No 262
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.68 E-value=0.16 Score=43.94 Aligned_cols=67 Identities=9% Similarity=0.106 Sum_probs=40.7
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecC-CcchHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+.......+|.+++|... +..++..+....+.+.+ .++|++ +|.|+++..
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pii-lvgNK~Dl~ 120 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLV-LVGNKVDLE 120 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEE-EEEEChhhh
Confidence 46788899986433222322224456888887654 44566666655555543 245644 899999863
No 263
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.68 E-value=0.46 Score=40.98 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=38.6
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHH-Hc---CCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SK---LKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l-~~---~~~~~~gvV~N~v~~ 346 (370)
+...+.++|+|............+..+|.+++|...... ++....+.+..+ +. .+.+ +-+|.|+++-
T Consensus 57 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl 128 (174)
T cd04153 57 KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAV-LLVLANKQDL 128 (174)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCC-EEEEEECCCC
Confidence 346789999986332212222224467999998876543 344444433333 22 2345 4589999985
No 264
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.67 E-value=0.017 Score=54.03 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=33.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 213 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~ 213 (370)
+.+.++..|+||||++.++|..++.. |.+|+++.++..
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 45555999999999999999999887 999999999763
No 265
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.0098 Score=56.34 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=35.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh----CC------CcEEEeeCCCCCCCCCc
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG----MG------ARVGIFDADVYGPSLPT 219 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~----~G------~rVllID~D~~~~sl~~ 219 (370)
+..+.-+-||+||||++..|..+|+. -| .+|++|.|....+++-.
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~ 144 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILE 144 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHH
Confidence 45555599999999999999999883 24 57999999888776543
No 266
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.66 E-value=0.021 Score=49.70 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=32.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+|.++ |-.|+||||++..|+..|...+..+.++|.|.
T Consensus 8 ~~I~i~-G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~ 45 (176)
T PRK05541 8 YVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGDE 45 (176)
T ss_pred CEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEecHH
Confidence 466665 99999999999999999998888899998764
No 267
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=95.65 E-value=0.031 Score=58.35 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=36.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
++++|.|+ +..|+||||+...|...|.++|+||.+|--|-.
T Consensus 9 ~~~vi~iv-G~s~sGKTTlie~li~~L~~~G~rVavIKh~~h 49 (597)
T PRK14491 9 SIPLLGFC-AYSGTGKTTLLEQLIPELNQRGLRLAVIKHAHH 49 (597)
T ss_pred CccEEEEE-cCCCCCHHHHHHHHHHHHHhCCceEEEEEcCCc
Confidence 36799999 678999999999999999999999999997654
No 268
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.60 E-value=0.02 Score=52.49 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=34.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~~ 214 (370)
.+.+.++.+|+|||+++.+++..++.. |.+|+.+.++...
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 344555999999999999999999987 9999999998743
No 269
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.57 E-value=0.17 Score=43.28 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=42.5
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecC-CcchHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|... +..++..+.+.+..+.+. +.+++ +|.|+.+..
T Consensus 51 ~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-iv~nK~Dl~ 121 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERM-LVGNKCDME 121 (167)
T ss_pred EEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE-EEEECcccc
Confidence 36788999986433222332334457888888764 455666777777666653 34544 888998864
No 270
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.55 E-value=0.034 Score=49.87 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=66.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeec-ccCCeeEEecCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT-EYLGVKLVSFGFS 253 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~-~~~~l~vl~~g~~ 253 (370)
.+.+.=|-.|+|||-++..+++-+-.+|++|.++-....- ..++. .+....-.+.+. -+..+.++|....
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~---refi~------qm~sl~ydv~~~~l~G~l~~~~~~~~ 99 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV---REFIK------QMESLSYDVSDFLLSGRLLFFPVNLE 99 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhH---HHHHH------HHHhcCCCchHHHhcceeEEEEeccc
Confidence 4444448999999999999999999999999999876421 11111 111111111111 1345666664322
Q ss_pred CccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCC
Q 017486 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP 290 (370)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp 290 (370)
...|........++.+++..+..++|+||||+=.
T Consensus 100 ---~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls 133 (235)
T COG2874 100 ---PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLS 133 (235)
T ss_pred ---ccccChHHHHHHHHHHHhhHHhhcCCEEEEeccc
Confidence 2345555566778888877766789999999855
No 271
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=95.53 E-value=0.15 Score=43.16 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=42.1
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.++|+|+-.....+....+..+|.+++|...+. .++..+...++.+.+. +.+ +-+|.|+++..
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 120 (164)
T cd04101 50 NTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMP-GVLVGNKMDLA 120 (164)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECcccc
Confidence 44679999998422112222222445799988887654 3456666666666554 344 44889999863
No 272
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=95.52 E-value=0.12 Score=44.21 Aligned_cols=69 Identities=12% Similarity=0.054 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~~ 348 (370)
..+.+.|+|+|+......+.......+|.+++|...+. .++..+. ..+..+.+. +.++ -+|.|+++...
T Consensus 44 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~~ 116 (174)
T smart00174 44 KPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPI-ILVGTKLDLRE 116 (174)
T ss_pred EEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEecChhhhh
Confidence 45678999998643222222222335688888876543 4566554 345555432 5555 48999988643
No 273
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=95.52 E-value=0.31 Score=44.29 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=41.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
+.|++.|+|+|..-....+.......+|.+|+|..... .++..+...+..+.+. +++ +-+|.|+++-.
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~ 113 (220)
T cd04126 42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCL-FAVVGNKLDLT 113 (220)
T ss_pred eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 45788999998643322222222445788888876554 4666766555444432 334 45899998864
No 274
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.50 E-value=0.22 Score=42.94 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
..+.+-|+|+|+......+....+..+|.+++|.... ..++..+...+..+.+. +.+ +.+|.|+++..
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~ 133 (180)
T cd04127 61 QRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPD-IVLCGNKADLE 133 (180)
T ss_pred CEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEEeCccch
Confidence 3467889999853221122222244578888887764 45667777666666542 344 45899999863
No 275
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.47 E-value=0.14 Score=43.80 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=42.0
Q ss_pred CcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
..+.|+|+|+.-....+.......+|.+++|.... ..++..+.+.+..+++. +.++ -+|.|+.+..
T Consensus 53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pv-ivv~nK~Dl~ 122 (168)
T cd01866 53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTI-MLIGNKCDLE 122 (168)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEECcccc
Confidence 46889999864322222222234578888888764 55677777777666553 4444 4888998864
No 276
>PRK05439 pantothenate kinase; Provisional
Probab=95.46 E-value=0.029 Score=53.70 Aligned_cols=41 Identities=27% Similarity=0.322 Sum_probs=34.7
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh--CCCcEEEeeCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVY 213 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~--~G~rVllID~D~~ 213 (370)
.+.+|+|+ |-.|+||||+|..|+..+.+ .|.+|.+|..|-.
T Consensus 85 ~~~iIgIa-G~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 85 VPFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34578887 99999999999999999976 4789999999864
No 277
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.46 E-value=0.027 Score=41.25 Aligned_cols=32 Identities=44% Similarity=0.546 Sum_probs=27.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
|+++ |-.|+||||++..|+..| .+.++.++|.
T Consensus 2 i~i~-G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAIT-GGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 4555 899999999999999999 6778888876
No 278
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.44 E-value=0.17 Score=42.78 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=41.8
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcCC---CCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKLK---VPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~~---~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+...........+..+|.+++|..+. ..++..+...+..+.... .+ +-+|.|+.+..
T Consensus 48 ~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 119 (163)
T cd01860 48 TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNII-IALVGNKADLE 119 (163)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 3456889999863322222222234578988888765 445667777766665543 33 44788998854
No 279
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=95.42 E-value=0.042 Score=57.29 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+ ..... ........+|.+++|+..+..........+..+...+++.+-+|+|+++..
T Consensus 49 ~~~v~~iDtPG-he~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 49 DYRLGFIDVPG-HEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred CEEEEEEECCC-HHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 36789999984 43222 222334457999999988765445566666777778888566999999863
No 280
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.42 E-value=0.015 Score=51.80 Aligned_cols=39 Identities=28% Similarity=0.246 Sum_probs=34.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.|.++ |-+|+||||.|-+||..|.+.+.+|..+..|...
T Consensus 3 LiIlT-GyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~ 41 (261)
T COG4088 3 LIILT-GYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR 41 (261)
T ss_pred eEEEe-cCCCCCchHHHHHHHHHHHHhhhhccccchhhhh
Confidence 44444 9999999999999999999999999999998754
No 281
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=95.42 E-value=0.069 Score=56.04 Aligned_cols=66 Identities=14% Similarity=0.092 Sum_probs=47.7
Q ss_pred CcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.-+-|||||. ..+. ......+..+|.+++|+..+..-..+....+..+...+++.+-+|+||++..
T Consensus 51 ~~i~~IDtPG-he~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 51 RVLGFIDVPG-HEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred cEEEEEECCC-HHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 3478999994 4332 2222334457999999988876666777778888888888777999999964
No 282
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.41 E-value=0.21 Score=47.00 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
++++=|+ +-.|+||||+|.+++......|.++..||+.-
T Consensus 60 g~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~ 98 (279)
T COG0468 60 GRITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTEH 98 (279)
T ss_pred ceEEEEe-cCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC
Confidence 4566666 89999999999999999999999999999875
No 283
>PRK05433 GTP-binding protein LepA; Provisional
Probab=95.40 E-value=0.087 Score=55.14 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=42.8
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.|.+.|+|||. ..+.. .....+..+|.+++|++.......+....+..+...+++++ +|+|+.+..
T Consensus 72 ~~~~lnLiDTPG-h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiI-vViNKiDl~ 139 (600)
T PRK05433 72 ETYILNLIDTPG-HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEII-PVLNKIDLP 139 (600)
T ss_pred CcEEEEEEECCC-cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEECCCCC
Confidence 467899999984 44322 22233456799999998765322333344444555688855 899999963
No 284
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.055 Score=57.24 Aligned_cols=69 Identities=20% Similarity=0.110 Sum_probs=53.7
Q ss_pred CC-CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~-~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+ .|.+-|||||.-.+...-....+..+|++++|+.+..--.-+++..++++.+.++|.+ +++|+++.-
T Consensus 72 ~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmDR~ 141 (697)
T COG0480 72 WKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMDRL 141 (697)
T ss_pred EcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECcccc
Confidence 56 4899999999644322222333455699999999988888889999999999999987 888999853
No 285
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.39 E-value=0.14 Score=44.19 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.|++.|+|+|+......+.......++.++++...+ ..++..+....+.+.+ .+.+++ +|.|+++..
T Consensus 48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 119 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV-LVGNKSDLH 119 (180)
T ss_pred EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEEchhhh
Confidence 467899999863221122222233457777766544 4455666555444433 355655 999999864
No 286
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.34 E-value=0.091 Score=56.01 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.++|||+ .... .+....+..+|.+++|+..+......+...+..+...++|++ +++|+++..
T Consensus 293 ~~~kItfiDTPG-he~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiI-VViNKiDl~ 360 (742)
T CHL00189 293 ENQKIVFLDTPG-HEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPII-VAINKIDKA 360 (742)
T ss_pred CceEEEEEECCc-HHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEE-EEEECCCcc
Confidence 357899999985 4322 222223445799999998766544556667777777888865 899999864
No 287
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.29 E-value=0.029 Score=52.18 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=34.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~~ 214 (370)
-+.+.++.+|+|||+++.++|..++.. |++|+++.++...
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~ 60 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSE 60 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-H
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCH
Confidence 455666999999999999999999987 6999999998754
No 288
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.25 E-value=0.024 Score=50.36 Aligned_cols=37 Identities=32% Similarity=0.374 Sum_probs=30.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCc----EEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGAR----VGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~r----VllID~D~ 212 (370)
+|+|+ |-+|+||||+|..|+..|.+.|.. +.++..|-
T Consensus 1 IIgI~-G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 1 IIGIA-GPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGG
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecc
Confidence 46776 889999999999999999988876 66666554
No 289
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.23 E-value=0.027 Score=52.41 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=32.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
.+-+.++ |+.|+|||.+|+.+|..+.+.|.+|+++.+
T Consensus 105 ~~nl~l~-G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 105 GENLVLL-GPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred CCcEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 4466666 999999999999999999988999998865
No 290
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=95.22 E-value=0.74 Score=39.83 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc-C---CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-L---KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~-~---~~~~~gvV~N~v~~~ 347 (370)
+.+.+.|+|+|.......+...-...+|.+++|.+... .++..+.+.+..+.+ . +.+ +-+|.|+++-.
T Consensus 55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~ 127 (175)
T smart00177 55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDLP 127 (175)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcc
Confidence 34678999998543322222222445799999887654 456666655554432 1 334 55999999853
No 291
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.21 E-value=0.034 Score=51.75 Aligned_cols=44 Identities=23% Similarity=0.297 Sum_probs=37.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl 217 (370)
.++++|+ |.+|+|||+++.+++...++.|.+|++|..+.....+
T Consensus 23 g~~~lI~-G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 23 GSVVLIT-GPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred CcEEEEE-cCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 3466666 9999999999999999999999999999999765443
No 292
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.21 E-value=0.25 Score=43.79 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+.......+|.+++|.... ..++..+.+.++.+... ..++ -+|.|+++..
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~pi-ivVgNK~Dl~ 123 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCK-VLVGNKNDDP 123 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECcccc
Confidence 356889999853222222222244568888887764 45667777777766553 3444 4889998853
No 293
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=95.20 E-value=0.32 Score=42.74 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHH-HHHHHHHHcC--CCCeEEEEEcCCccCCC-C---
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFDAD-G--- 350 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~-~~~~~~l~~~--~~~~~gvV~N~v~~~~~-~--- 350 (370)
..+.+-|.||+..-....+.......+|.+++|...+ ..++..+ ...++.+++. +.++ -+|.|+++-..+ +
T Consensus 51 ~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~pi-ilVgNK~DL~~~~~~~~ 129 (182)
T cd04172 51 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSDLRTDLTTLV 129 (182)
T ss_pred EEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEeEChhhhcChhhHH
Confidence 3467889999853221222222233578888887644 4566765 5666666653 3444 489999996431 1
Q ss_pred ----ccccccCCChHHHHHhHcC
Q 017486 351 ----KRYYPFGRGSGSQVCTLSN 369 (370)
Q Consensus 351 ----~~~~~~g~~~~~~~a~~~~ 369 (370)
++........|+++|+++|
T Consensus 130 ~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 130 ELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcC
Confidence 1112344556888888876
No 294
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.18 E-value=0.065 Score=57.51 Aligned_cols=68 Identities=13% Similarity=0.001 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.|-+.+||||+-..........+..+|.+++|+.+..--....+..+..+.+.+.+.+ +++|+.+..
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~i-v~iNK~D~~ 152 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPV-LFINKVDRL 152 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeE-EEEECchhh
Confidence 46778999999533322222233455799999988776555567777877777788865 889999854
No 295
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.14 E-value=0.028 Score=49.44 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=29.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+-+.++ |..|+|||.+|..+|..+.+.|++|+.++.+
T Consensus 48 ~~l~l~-G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 48 ENLILY-GPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp -EEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred eEEEEE-hhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 356666 6789999999999999999999999999864
No 296
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.13 E-value=0.24 Score=42.44 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=41.7
Q ss_pred CCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
..+++-|+|+|+..... .+.......+|.+++|..... .++..+...++.+.+. ++|++ +|.|+.+..
T Consensus 49 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~ 122 (170)
T cd04115 49 ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRI-LVGNKCDLR 122 (170)
T ss_pred eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEE-EEEECccch
Confidence 34788999997532211 111111234688888877654 4566777766666543 45654 899999853
No 297
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=95.12 E-value=0.42 Score=40.67 Aligned_cols=69 Identities=10% Similarity=0.068 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcCCC--CeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKV--PCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~~--~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+..............+|.+++|..... .++..+...++.+..... ..+-+|.|+++..
T Consensus 49 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~ 120 (166)
T cd04122 49 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE 120 (166)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 34678999998532222222222445788888877654 556667676666554321 2355899998863
No 298
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=95.12 E-value=0.22 Score=48.37 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=30.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl 217 (370)
|.+.+|-=|+||||+--++... ..|+|+.+|-.|+..-++
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~~I 45 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDLGI 45 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccccc
Confidence 3444578899999999988753 468999999999865443
No 299
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.11 E-value=0.3 Score=41.52 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~ 346 (370)
.+.+-|+|+|+......+.......+|.+++|..... .++..+...+..+.+. +.++ -+|.|+++.
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~-iiv~nK~Dl 119 (166)
T cd01869 50 TIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNK-LLVGNKCDL 119 (166)
T ss_pred EEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE-EEEEEChhc
Confidence 3567899998633222222222345789988877543 4566666666666543 3454 478899885
No 300
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.10 E-value=0.043 Score=49.93 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=33.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
..+.+. +..|+||||++.+++...++.|.+|++++++..
T Consensus 21 ~~~~i~-G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 21 FFVAVT-GEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred eEEEEE-CCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 456665 899999999999999888888999999998754
No 301
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=95.10 E-value=0.38 Score=40.55 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=39.5
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHH-HHHHc---CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGV-RMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~-~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
....+.++|+|.......+....+..+|.+++|...... ++....+.+ ..++. .+.|++ +|.|+.+..
T Consensus 41 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~Dl~ 113 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLL-VFANKQDMP 113 (158)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEE-EEEeCCCCC
Confidence 346789999995433222222334567999999876653 233333333 33332 255554 999999863
No 302
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.038 Score=52.57 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=79.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh----CCCcEEEeeCCCCCCCCCcCCCCcccc--------cccCCCCCceeec
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTIIPT 240 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~----~G~rVllID~D~~~~sl~~~l~~~~~~--------~~~~~~~~~i~~~ 240 (370)
.|+|.++ |-+|+|||+++-.||+-|+- .-++..+|+.+-.+ -++.+|+....+ .+...+...++-.
T Consensus 177 NRliLlh-GPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs-LFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 177 NRLILLH-GPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS-LFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeEEEEe-CCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH-HHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 4677777 99999999999999999982 34678888887543 455566654331 1111111111111
Q ss_pred ccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcC--CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcch
Q 017486 241 EYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTE--WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (370)
Q Consensus 241 ~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~--~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s 318 (370)
-.+.+.-+.+..... ..--.+.+....++.++.++. +....++|+-|..-......++ .-.+|.+..|-.|+...
T Consensus 255 LIDEVESLa~aR~s~-~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~Af--VDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 255 LIDEVESLAAARTSA-SSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAF--VDRADIVFYVGPPTAEA 331 (423)
T ss_pred EeHHHHHHHHHHHhh-hcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHh--hhHhhheeecCCccHHH
Confidence 111111111110000 000011112223333333321 1445566666654333333333 44568888898888877
Q ss_pred HHHHHH-HHHHHHcCCC
Q 017486 319 FIDVAK-GVRMFSKLKV 334 (370)
Q Consensus 319 ~~~~~~-~~~~l~~~~~ 334 (370)
+..+.+ .++.+-..|+
T Consensus 332 i~~IlkscieEL~~~gI 348 (423)
T KOG0744|consen 332 IYEILKSCIEELISSGI 348 (423)
T ss_pred HHHHHHHHHHHHHhcCe
Confidence 666544 3555555443
No 303
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.08 E-value=0.53 Score=45.39 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=76.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFSG 254 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~~ 254 (370)
+..++ |-=|+||||+-.+|..... |+|+.+|=-++.-=++.. .. .......++.=++.|-.
T Consensus 3 Vtvit-GFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~-----~~----------~l~~~~e~~~El~nGCI- 63 (323)
T COG0523 3 VTVIT-GFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDG-----GA----------LLSDTGEEVVELTNGCI- 63 (323)
T ss_pred EEEEe-ecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccC-----CC----------ccccCCccEEEeCCceE-
Confidence 34444 6668999999988865554 899999988875533331 00 00111111111111100
Q ss_pred ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH--HH------hhHhCCCeEEEEecCCcchHHH---HH
Q 017486 255 QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--TL------CQVVPLTAAVIVTTPQKLAFID---VA 323 (370)
Q Consensus 255 ~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l--~~------~~~~~~d~viiV~~p~~~s~~~---~~ 323 (370)
-..-.......+.++.+ . ++.+|+|||-+.+-...... ++ ......|.++-|+.+....... ..
T Consensus 64 ---CCT~r~dl~~~~~~L~~-~-~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~ 138 (323)
T COG0523 64 ---CCTVRDDLLPALERLLR-R-RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAE 138 (323)
T ss_pred ---EEeccchhHHHHHHHHh-c-cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHH
Confidence 00001233445666666 3 36799999999853322121 11 1122356677777766553221 23
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 324 KGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
-+.+++.-.++ +|+||++...
T Consensus 139 ~~~~Qia~AD~----ivlNK~Dlv~ 159 (323)
T COG0523 139 LAEDQLAFADV----IVLNKTDLVD 159 (323)
T ss_pred HHHHHHHhCcE----EEEecccCCC
Confidence 33445544443 7899988644
No 304
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.08 E-value=0.21 Score=48.05 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
++++-+.+ ..+.||||++.++...+.+.|..+++||+...
T Consensus 53 G~ivEi~G-~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 53 GRIVEIYG-PESSGKTTLALHAIAEAQKQGGICAFIDAEHA 92 (322)
T ss_dssp TSEEEEEE-STTSSHHHHHHHHHHHHHHTT-EEEEEESSS-
T ss_pred CceEEEeC-CCCCchhhhHHHHHHhhhcccceeEEecCccc
Confidence 57888885 57899999999999888889999999999753
No 305
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.03 E-value=0.29 Score=42.53 Aligned_cols=42 Identities=10% Similarity=0.022 Sum_probs=27.2
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 305 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 305 ~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
++.+++|......-.....++++.+...+.+++ +|+|+++..
T Consensus 101 ~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pvi-iv~nK~D~~ 142 (179)
T TIGR03598 101 LKGVVLLMDIRHPLKELDLEMLEWLRERGIPVL-IVLTKADKL 142 (179)
T ss_pred hcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccC
Confidence 467788877655322333455667777777755 788998853
No 306
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.03 E-value=0.25 Score=52.91 Aligned_cols=68 Identities=21% Similarity=0.146 Sum_probs=43.4
Q ss_pred CCCcEEEEcCCCCCCh---H-----HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~---~-----~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
....+.++|||+...+ . ......+..+|.+++|++....-...-..+.+.+++.+.+++ +|+|+++..
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvI-lV~NK~D~~ 396 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVV-LAVNKIDDQ 396 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEE-EEEECcccc
Confidence 5567899999863211 0 111122345799999998764322223456777888888876 799999963
No 307
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.01 E-value=0.19 Score=50.30 Aligned_cols=68 Identities=12% Similarity=0.001 Sum_probs=43.9
Q ss_pred CCCcEEEEcCCCCCCh-------H----HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGD-------I----QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~-------~----~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
...++.++|||+.... . ..+...+..+|.+++|++........-.+.+..+.+.+.+++ +|+|+++..
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~i-vv~NK~Dl~ 297 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALV-IVVNKWDLV 297 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEE-EEEECccCC
Confidence 4567899999863110 0 011122345799999988776544445566777777777766 899999864
No 308
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=95.00 E-value=0.48 Score=39.84 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=38.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHH-Hc---CCCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMF-SK---LKVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l-~~---~~~~~~gvV~N~v~~ 346 (370)
.+.+.++|+|+..............+|.+++|...... ++......+..+ +. .+.++ -+|.|+++.
T Consensus 43 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 113 (160)
T cd04156 43 HLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPV-VLLANKQDL 113 (160)
T ss_pred ceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCE-EEEEECccc
Confidence 46789999985322222222224457888888876443 345554444333 22 35554 499999986
No 309
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.99 E-value=0.036 Score=50.45 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=31.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh--CCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~--~G~rVllID~D~~ 213 (370)
+|++. |..|+||||++..|+..+.. .+.+|.+|-.|-.
T Consensus 1 IigI~-G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEee-CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 35666 89999999999999999975 5678999888855
No 310
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.98 E-value=0.045 Score=48.32 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=31.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
+.|+|. |-.|+||||++..|+..|...|++|..+-.
T Consensus 4 ~~Ivie-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 4 MFIVIE-GIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 566776 999999999999999999999999987644
No 311
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=94.97 E-value=0.33 Score=41.02 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .++..+....+.+.+ .+.|++ +|.|+++..
T Consensus 47 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-~v~nK~Dl~ 118 (164)
T smart00173 47 VCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV-LVGNKCDLE 118 (164)
T ss_pred EEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccc
Confidence 4667889998633222222222445688888776553 455666555554433 245655 889999864
No 312
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.95 E-value=0.038 Score=55.26 Aligned_cols=40 Identities=28% Similarity=0.377 Sum_probs=34.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~~ 214 (370)
-+.+.++.+|+|||+++.++|..+| +.|++|+++.++...
T Consensus 195 ~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~ 235 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSA 235 (421)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 3445569999999999999999988 679999999998743
No 313
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.95 E-value=0.16 Score=44.50 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=28.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
.|-|+ .-.|=||||.|..+|...+-+|+||++|=.
T Consensus 23 li~VY-tGdGKGKTTAAlGlalRAaG~G~rV~iiQF 57 (178)
T PRK07414 23 LVQVF-TSSQRNFFTSVMAQALRIAGQGTPVLIVQF 57 (178)
T ss_pred EEEEE-eCCCCCchHHHHHHHHHHhcCCCEEEEEEE
Confidence 44444 345779999999999999999999999865
No 314
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.92 E-value=0.053 Score=49.17 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=34.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.++.+. +..|+|||+++.+++...+++|.+|++++++..
T Consensus 17 ~~~li~-G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 17 HVIVVI-GEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 466665 789999999999999998888999999999873
No 315
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=94.92 E-value=0.38 Score=42.84 Aligned_cols=67 Identities=18% Similarity=0.119 Sum_probs=40.6
Q ss_pred CCcEEEEcCCCC------CChH--HHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHc------CCCCeEEEEEcCC
Q 017486 280 ELDYLVIDMPPG------TGDI--QLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK------LKVPCIAVVENMC 344 (370)
Q Consensus 280 ~yD~VIIDtpp~------~~~~--~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~------~~~~~~gvV~N~v 344 (370)
.+.+.|+|||+. .+.. ......+..+|.+++|.... ..++..+....+.+.+ .++|++ +|.|+.
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pii-ivgNK~ 126 (198)
T cd04142 48 VYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV-VVGNKR 126 (198)
T ss_pred EEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEE-EEEECc
Confidence 477889999752 1111 01112234579999988774 4456666666655543 245544 899999
Q ss_pred ccC
Q 017486 345 HFD 347 (370)
Q Consensus 345 ~~~ 347 (370)
+..
T Consensus 127 Dl~ 129 (198)
T cd04142 127 DQQ 129 (198)
T ss_pred ccc
Confidence 873
No 316
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=94.91 E-value=0.33 Score=42.14 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=40.8
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecC-CcchHHHHH-HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p-~~~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+++.-....+.......+|.+++|... +..++..+. ..+..+.+. +.|+ -+|.|+.+..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~pi-ilvgnK~Dl~ 118 (175)
T cd01874 47 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPF-LLVGTQIDLR 118 (175)
T ss_pred EEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEECHhhh
Confidence 347788999985432212222223457888888764 445666665 355555543 4555 4899998853
No 317
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=94.90 E-value=0.11 Score=56.72 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=48.6
Q ss_pred CCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.|-+=|||||. ..+.. -....+..+|.+++|+.+..--...+++.++.+.+.+++++ +++|+.+..
T Consensus 97 ~~~inliDtPG-h~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i-~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPG-HVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPV-LTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCC-HHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEE-EEEECCccc
Confidence 45567999994 43332 23333556799999999777656677888898988899876 899999875
No 318
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=94.89 E-value=0.39 Score=43.13 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=42.1
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcCC-----CCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK-----VPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~-----~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+.......+|.+++|.+... .++..+...++.+.+.. ...+-+|.|+.+-.
T Consensus 49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 4678899998532212222222446799998887554 36677776666666532 12356899999863
No 319
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.87 E-value=0.062 Score=51.61 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=30.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh------CCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~------~G~rVllID~D~ 212 (370)
.|.-..|..|+|||+++.++|...+. .|.+|+.||+.-
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 44444599999999999999976542 367999999975
No 320
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.87 E-value=0.033 Score=52.30 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=28.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.|.++ |-+|+||||+|..|+..+...+++|.+|+.|..
T Consensus 3 Liil~-G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~ 40 (270)
T PF08433_consen 3 LIILC-GLPCSGKTTRAKELKKYLEEKGKEVVIISDDSL 40 (270)
T ss_dssp EEEEE---TTSSHHHHHHHHHHHHHHTT--EEEE-THHH
T ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 44444 999999999999999999999999999996643
No 321
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.86 E-value=0.037 Score=49.15 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=30.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
|+++ |-.|+||||++..|+..+ .+.++.++.+|-..
T Consensus 2 igi~-G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~ 37 (198)
T cd02023 2 IGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYY 37 (198)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHh--CCCCeEEEEecccc
Confidence 5666 889999999999999988 56689999998644
No 322
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=94.86 E-value=0.19 Score=52.55 Aligned_cols=67 Identities=13% Similarity=0.046 Sum_probs=41.1
Q ss_pred CCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..|.+.|+|||. ..+. ......+..+|.+++|++.......+....+..+.+.+++++ +|+|+++..
T Consensus 68 ~~~~l~liDTPG-~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiI-iViNKiDl~ 135 (595)
T TIGR01393 68 ETYVLNLIDTPG-HVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEII-PVINKIDLP 135 (595)
T ss_pred CEEEEEEEECCC-cHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEE-EEEECcCCC
Confidence 347889999985 4332 222233556799999988765322223233333344677754 899999963
No 323
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.83 E-value=0.3 Score=41.39 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=41.1
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecC-CcchHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+.......++.+++|... +..+...+.+.++.+.+. +.+ +-+|.|+.+..
T Consensus 51 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~ 121 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIV-IMLVGNKSDLR 121 (165)
T ss_pred EEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 35688999985432222222223456877777665 455667777777766553 344 44889999853
No 324
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=94.81 E-value=0.33 Score=40.87 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=40.6
Q ss_pred CcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc-CC--CCeEEEEEcCCcc
Q 017486 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-LK--VPCIAVVENMCHF 346 (370)
Q Consensus 281 yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~-~~--~~~~gvV~N~v~~ 346 (370)
+.+.|+|+|+......+....+..+|.+++|...+. .+...+...+..+.+ .+ .+ +-+|.|+++.
T Consensus 49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVI-IVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEEChhc
Confidence 468899998643322222222445788888887654 346666666666543 33 44 4599999987
No 325
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.81 E-value=0.34 Score=42.36 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=41.6
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+++.++|+|+.-.........+..+|.+++|.... ..++..+...++.+.+. +.+ +-+|.|+.+..
T Consensus 48 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~ 118 (188)
T cd04125 48 IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVI-KVIVANKSDLV 118 (188)
T ss_pred EEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECCCCc
Confidence 467889999864322222222244579998887764 34566666666666543 333 55899999854
No 326
>PRK06526 transposase; Provisional
Probab=94.79 E-value=0.022 Score=53.03 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=29.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
-+.++ |.+|+|||++|.+++..+.+.|++|+.+.+
T Consensus 100 nlll~-Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 100 NVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred eEEEE-eCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 45555 899999999999999999999999987544
No 327
>PLN00223 ADP-ribosylation factor; Provisional
Probab=94.79 E-value=1.3 Score=38.71 Aligned_cols=67 Identities=9% Similarity=0.046 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~ 346 (370)
+.+.+.|+|+|.......+.......+|.+|+|.+... .++..+...+..+.+ .+.+ +-+|.|+.+.
T Consensus 59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl 130 (181)
T PLN00223 59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAV-LLVFANKQDL 130 (181)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCC-EEEEEECCCC
Confidence 45678999998532211222222445789999887654 345555544444322 1344 4589999985
No 328
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=94.75 E-value=0.31 Score=41.13 Aligned_cols=68 Identities=10% Similarity=0.034 Sum_probs=40.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+.-............+|.+++|..... .+...+...+..+.. .+.+ +-+|.|+.+..
T Consensus 47 ~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~ 118 (161)
T cd04113 47 KRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIV-VILVGNKSDLA 118 (161)
T ss_pred EEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEEchhcc
Confidence 34678899998632211222222445788888876654 355556666555543 3455 45889998763
No 329
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.73 E-value=0.051 Score=47.71 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=30.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
+|+|. |-.|+||||++..|+..|...|++|..+.-
T Consensus 2 ~I~ie-G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 56666 899999999999999999999999977654
No 330
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=94.70 E-value=0.58 Score=42.57 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=51.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHH-HHHHHHc--CCCCeEEEEEcCCccCCCCc---
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAK-GVRMFSK--LKVPCIAVVENMCHFDADGK--- 351 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~-~~~~l~~--~~~~~~gvV~N~v~~~~~~~--- 351 (370)
..+.+-|+||+.......+.......+|.+++|..... .++..+.. ....+.+ .+.+++ +|.|+++...+..
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~pii-LVgnK~DL~~~~~~~~ 125 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVV-LVGCKLDMRTDLATLR 125 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEEECcccccchhhhh
Confidence 34678899998543222222222345788888876544 55666643 3333333 245544 8999999754211
Q ss_pred -----cccccCCChHHHHHhHcC
Q 017486 352 -----RYYPFGRGSGSQVCTLSN 369 (370)
Q Consensus 352 -----~~~~~g~~~~~~~a~~~~ 369 (370)
.........|..+|+++|
T Consensus 126 ~~~~~~~~pIs~e~g~~~ak~~~ 148 (222)
T cd04173 126 ELSKQRLIPVTHEQGTVLAKQVG 148 (222)
T ss_pred hhhhccCCccCHHHHHHHHHHcC
Confidence 111233446788888876
No 331
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=94.69 E-value=0.23 Score=43.68 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+.-....+.......+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++-.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~ 119 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVV-IMLLGNKADMS 119 (191)
T ss_pred EEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEEcccch
Confidence 3568899998642221222222334788888887654 4566666666666553 344 44888999863
No 332
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=94.68 E-value=0.42 Score=40.00 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.2
Q ss_pred EEEEeCCCCChHHHHHHHHHH
Q 017486 176 VAVSSCKGGVGKSTVAVNLAY 196 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~ 196 (370)
|++. |..|+||||+.-.|+.
T Consensus 2 i~l~-G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFA-GRSNVGKSSLINALTN 21 (170)
T ss_pred EEEE-cCCCCCHHHHHHHHhc
Confidence 4555 8899999999988764
No 333
>PRK09183 transposase/IS protein; Provisional
Probab=94.68 E-value=0.049 Score=50.87 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=30.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
..+.++ |..|+|||+++..+|..+...|++|+.+++
T Consensus 103 ~~v~l~-Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 103 ENIVLL-GPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 355565 899999999999999998889999998874
No 334
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=94.67 E-value=0.46 Score=43.06 Aligned_cols=66 Identities=18% Similarity=0.116 Sum_probs=41.9
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHh-CCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVV-PLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~-~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+.. ......+ .. .+|.+++|..... .++..+...+..+.+. +.|+ -+|.|+++-.
T Consensus 48 ~~~~l~i~Dt~G~~-~~~~~~~-~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~pi-ilV~NK~Dl~ 119 (221)
T cd04148 48 EESTLVVIDHWEQE-MWTEDSC-MQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPI-ILVGNKSDLA 119 (221)
T ss_pred EEEEEEEEeCCCcc-hHHHhHH-hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEChhcc
Confidence 34678999998643 2211111 22 5799988876654 4667677777766553 4554 4899999853
No 335
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.65 E-value=0.049 Score=49.22 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=33.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+.+.++ |..|+|||+++..++..+.+.|.+++.+|++..
T Consensus 39 ~~lll~-G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 39 RFLYLW-GESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 356666 899999999999999998888899999998654
No 336
>PRK05595 replicative DNA helicase; Provisional
Probab=94.64 E-value=0.05 Score=54.88 Aligned_cols=39 Identities=28% Similarity=0.386 Sum_probs=33.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~ 213 (370)
-+.+.++.+|+|||+++.|+|..+| +.|++|+++.+...
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms 241 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS 241 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 4556669999999999999999877 57999999999874
No 337
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=94.60 E-value=0.41 Score=40.30 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+.-.....+|.+++|...+ ..++..+...++.+.+. +.|++ +|.|+++..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 119 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV-LVGNKCDLE 119 (163)
T ss_pred EEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccc
Confidence 356778999864322222222234568888876544 45666776666666532 45655 899999853
No 338
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=94.60 E-value=0.45 Score=40.38 Aligned_cols=66 Identities=12% Similarity=0.207 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCCCC-hHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC-----CCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~-~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~v~~ 346 (370)
.+.+-|+|+|+... ........+..+|.+++|..... .++..+....+.+.+. +.|+ -+|.|+.+.
T Consensus 46 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 118 (165)
T cd04146 46 QVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPV-ILVGNKADL 118 (165)
T ss_pred EEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECCch
Confidence 34677999986431 11112222445688888877654 4566666666666542 4554 478899885
No 339
>PRK12377 putative replication protein; Provisional
Probab=94.58 E-value=0.052 Score=50.32 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=31.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.+.++ |..|+|||+++..+|..+.+.|++|+++...
T Consensus 103 ~l~l~-G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 103 NFVFS-GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 45555 8999999999999999999999999988764
No 340
>PRK04004 translation initiation factor IF-2; Validated
Probab=94.56 E-value=0.29 Score=51.15 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=42.1
Q ss_pred cEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 282 DYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 282 D~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.+.++|||. ..+. .+.......+|.+++|+.....-.......+..+...+++++ +++|+++..
T Consensus 72 ~i~~iDTPG-~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiI-vviNK~D~~ 136 (586)
T PRK04004 72 GLLFIDTPG-HEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFV-VAANKIDRI 136 (586)
T ss_pred CEEEEECCC-hHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEE-EEEECcCCc
Confidence 489999995 4322 222222344799999988765333445555667777788855 899999863
No 341
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=94.56 E-value=0.54 Score=41.23 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=39.4
Q ss_pred CcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC------CCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL------KVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~------~~~~~gvV~N~v~~~ 347 (370)
+.+-|+|+|+......+.......+|.+++|...+ ..++..+...++.+.+. +.+++ +|.|+++..
T Consensus 47 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lvgNK~Dl~ 119 (190)
T cd04144 47 CMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIM-IVGNKCDKV 119 (190)
T ss_pred EEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEE-EEEEChhcc
Confidence 45788999863322222222234568888886643 34566666666666432 45544 789999863
No 342
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.54 E-value=0.066 Score=43.73 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=32.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+.+.++ |..|+|||+++..++..+...+.++..++++..
T Consensus 20 ~~v~i~-G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 20 KNLLLY-GPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 355555 999999999999999999888889999988654
No 343
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=94.50 E-value=0.018 Score=51.56 Aligned_cols=32 Identities=41% Similarity=0.308 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
++|+++ |.-|+||||++..|+. .|. .+||+|-
T Consensus 2 ~~igit-G~igsGKst~~~~l~~----~g~--~vid~D~ 33 (200)
T PRK14734 2 LRIGLT-GGIGSGKSTVADLLSS----EGF--LIVDADQ 33 (200)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHH----CCC--eEEeCcH
Confidence 578888 8889999999988873 465 4688884
No 344
>PLN03110 Rab GTPase; Provisional
Probab=94.50 E-value=0.44 Score=42.97 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=42.3
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+.......++.+++|.... ..++..+...+..+.+. ++++ -+|.|+++..
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-iiv~nK~Dl~ 130 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVI-MMAGNKSDLN 130 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeE-EEEEEChhcc
Confidence 357888999864322223233344578888887764 45666777777666653 4544 4889999853
No 345
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.50 E-value=0.27 Score=49.09 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=42.5
Q ss_pred CCcEEEEcCCCCCCh-------HH----HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGD-------IQ----LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~-------~~----l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
...+.|+|||+.... .. .+...+..+|.+++|.+........-.+.+..+.+.+.+++ +|+|+++..
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~ii-iv~NK~Dl~ 296 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALV-IVVNKWDLV 296 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEECcccC
Confidence 346899999852110 00 11122445799999988775444444566777777777765 899999864
No 346
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.44 E-value=0.078 Score=54.11 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=32.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~ 212 (370)
+++.|+ |-+|+||||+|.+++..-+++ |.++++|.++.
T Consensus 22 ~~~Li~-G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 22 RSTLVS-GTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 455555 999999999999999887665 99999999974
No 347
>COG2403 Predicted GTPase [General function prediction only]
Probab=94.44 E-value=0.059 Score=52.05 Aligned_cols=38 Identities=34% Similarity=0.468 Sum_probs=35.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
..+|+|+...-|+|||+++..+|+.|.++|+||++|-.
T Consensus 126 kPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh 163 (449)
T COG2403 126 KPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH 163 (449)
T ss_pred CceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence 35999999999999999999999999999999999976
No 348
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=94.43 E-value=0.56 Score=40.87 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.++|+|............+..+|.+++|.+.... ++......+..+.+ .+.+++ +|.|+++..
T Consensus 62 ~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvi-vv~NK~Dl~ 133 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFL-ILGNKIDLP 133 (190)
T ss_pred CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEE-EEEeCCCCC
Confidence 45678899875322222212223456888888776543 34434434333322 345544 789999853
No 349
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=94.42 E-value=0.071 Score=51.25 Aligned_cols=45 Identities=29% Similarity=0.180 Sum_probs=38.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~ 218 (370)
++.+++. |---+||||++.-|-.+..+.|+|.+.+|+|+.++++.
T Consensus 103 GPrv~vV-Gp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sit 147 (415)
T KOG2749|consen 103 GPRVMVV-GPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSIT 147 (415)
T ss_pred CCEEEEE-CCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCcee
Confidence 3456666 55578999999999999999999999999999998764
No 350
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=94.40 E-value=0.71 Score=39.26 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=40.0
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+.......+|.+++|.+.. ..++..+...++.+.+. +.+ +-+|.|+++..
T Consensus 49 ~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~ 119 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQ-VILVGNKCDME 119 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCC-EEEEEECcccC
Confidence 356889999753221222222234568888876643 45666666666666543 334 55899998864
No 351
>PRK08506 replicative DNA helicase; Provisional
Probab=94.40 E-value=0.063 Score=54.57 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=35.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
-+.+.++.+|+|||+++.|+|...++.|++|+++.++...
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~ 232 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPA 232 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCH
Confidence 4556669999999999999999999999999999998754
No 352
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=94.39 E-value=0.53 Score=39.59 Aligned_cols=68 Identities=10% Similarity=0.044 Sum_probs=40.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
..+++.|+|+|+......+.....-.+|.+++|..... .++..+...+..+.+ .+.++ -+|.|+.+..
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~-~iv~nK~D~~ 119 (161)
T cd01863 47 KKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVK-MLVGNKIDKE 119 (161)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcE-EEEEECCccc
Confidence 34678999999643222222222335788888877654 345555555555543 24444 4888998864
No 353
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=94.39 E-value=0.071 Score=48.46 Aligned_cols=39 Identities=33% Similarity=0.344 Sum_probs=34.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~ 212 (370)
.+-++|. |..|+|||+++..|...+. +.|.+++++|..-
T Consensus 23 ~~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 23 NRHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 3578888 8889999999999999999 8899999999864
No 354
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=94.38 E-value=0.66 Score=38.74 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=37.4
Q ss_pred CcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
+.+-|+|+|+......+.......+|.+++|...+ ..++..+...+..+.+ .+.+++ +|.|+++..
T Consensus 49 ~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~ 119 (162)
T cd04138 49 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV-LVGNKCDLA 119 (162)
T ss_pred EEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccc
Confidence 44667999853322222222233568777775543 3455666555555443 255654 899999863
No 355
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=94.37 E-value=0.071 Score=54.14 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=43.5
Q ss_pred CCeEEEEEeCC---CCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc
Q 017486 172 ISNIVAVSSCK---GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR 226 (370)
Q Consensus 172 ~~kvI~v~S~k---GGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~ 226 (370)
.+|.|.||+-. -|+||||++..|+.+|.+.|+++++. ++.||+.-.||....
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~~---lRePSlGP~FGiKGG 116 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSGA---IRQPSGGPTMNIKGS 116 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEEE---EecCCcCCcCCcccc
Confidence 35788777654 49999999999999999999999865 788899888887654
No 356
>PF13173 AAA_14: AAA domain
Probab=94.32 E-value=0.067 Score=44.06 Aligned_cols=39 Identities=26% Similarity=0.260 Sum_probs=31.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+++.++ |.-|+||||++.+++..+. ...+++.+|+|-..
T Consensus 3 ~~~~l~-G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 3 KIIILT-GPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR 41 (128)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence 466666 8889999999999998877 56789999998643
No 357
>PRK06217 hypothetical protein; Validated
Probab=94.31 E-value=0.062 Score=47.22 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.|.|+ |-.|+||||++..||..+ |.. .+|+|-
T Consensus 2 ~~I~i~-G~~GsGKSTla~~L~~~l---~~~--~~~~D~ 34 (183)
T PRK06217 2 MRIHIT-GASGSGTTTLGAALAERL---DIP--HLDTDD 34 (183)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence 346666 899999999999999876 444 677774
No 358
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=94.30 E-value=1 Score=39.26 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=40.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHH-Hc---CCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l-~~---~~~~~~gvV~N~v~~ 346 (370)
..+.+.|+|+|.......+.......+|.+|+|..... .++..+...+..+ .. .+.+ +-+|.|+.+.
T Consensus 59 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl 130 (182)
T PTZ00133 59 KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAV-LLVFANKQDL 130 (182)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCC-EEEEEeCCCC
Confidence 45679999998532222222222446799999987653 4455555444433 22 2345 4489999985
No 359
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=94.28 E-value=0.086 Score=50.43 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=51.6
Q ss_pred cEEEEcCCCCCChHHH-HHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCCC
Q 017486 282 DYLVIDMPPGTGDIQL-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDAD 349 (370)
Q Consensus 282 D~VIIDtpp~~~~~~l-~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~~ 349 (370)
.|-=+||| |..|..- .+.-....|+.|+|+.+..-.+-+++.-+=..++.|++.+-+.+|+++...+
T Consensus 118 hYaH~DCP-GHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d 185 (449)
T KOG0460|consen 118 HYAHTDCP-GHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDD 185 (449)
T ss_pred ccccCCCC-chHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCC
Confidence 45567998 4554332 2222345699999999988889999999989999999999999999997643
No 360
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=94.27 E-value=0.53 Score=39.84 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+.-.....+|.+++|...+ ..++..+.+.+..+.+ .+.|++ +|.|+.+..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 119 (164)
T cd04175 48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMI-LVGNKCDLE 119 (164)
T ss_pred EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECCcch
Confidence 466779999864322222222244568888877644 3456666665555542 346655 999999864
No 361
>KOG3381 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.14 Score=42.91 Aligned_cols=59 Identities=14% Similarity=0.337 Sum_probs=47.2
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEe--c---CC--CeEEEEEEeCCCCCCcHHHH
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQIN--E---AL--GEVSFRLELTTPACPIKDMF 131 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~div~lGlV~~v~v~--~---~~--~~v~v~l~lt~~~cP~~~~i 131 (370)
.....+.+.+.++.|+|||-|..+-+|+.|.+-.|+ + +. .-|.|.+++|-|.|.++-.|
T Consensus 32 ~~~~~~~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V~i~ftPTipHCSmaTlI 97 (161)
T KOG3381|consen 32 DSEDAEEIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYVRITFTPTIPHCSMATLI 97 (161)
T ss_pred cchhHHHHHHHHhccCCCCCCccHHHccceeecceEeecCCCCCcceEEEEEeccCCCcchHHhhh
Confidence 566788899999999999999999999988776554 1 11 25889999999999977544
No 362
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=94.21 E-value=0.53 Score=39.97 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=37.9
Q ss_pred CcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
+.+.++|+|+...........+..+|.+++|.+... .+...+...+..++. .+++++ +|.|+.+..
T Consensus 56 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i-~v~NK~D~~ 125 (169)
T cd04114 56 IKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITI-LVGNKIDLA 125 (169)
T ss_pred EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECcccc
Confidence 567889998532222222222445788888877554 344444455444443 345554 889999863
No 363
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.21 E-value=0.054 Score=52.37 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=33.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+-+.++ |..|+|||+++..+|..+.+.|++|+.+.++-
T Consensus 183 ~~~Lll~-G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 183 NENLLFY-GNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CCcEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 3566666 89999999999999999999999999998753
No 364
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=94.21 E-value=0.91 Score=40.23 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=36.2
Q ss_pred CcEEEEcCCCCCCh------HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~------~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.++.++|+|. .++ ..+....+..+|.++++... ..+ ..-.+.++.+.+.+.+++ +|+|+++..
T Consensus 52 ~~l~l~DtpG-~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~~~-~~d~~~~~~l~~~~~~~i-lV~nK~D~~ 120 (197)
T cd04104 52 PNVTLWDLPG-IGSTAFPPDDYLEEMKFSEYDFFIIISST-RFS-SNDVKLAKAIQCMGKKFY-FVRTKVDRD 120 (197)
T ss_pred CCceEEeCCC-CCcccCCHHHHHHHhCccCcCEEEEEeCC-CCC-HHHHHHHHHHHHhCCCEE-EEEecccch
Confidence 4678888874 431 11111112345777776543 332 223456677777777764 899999964
No 365
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.20 E-value=0.081 Score=53.37 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=33.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.+..+.+|+||||++.++|..+++.|.+|+++++..
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 34445599999999999999999998899999999864
No 366
>PRK06749 replicative DNA helicase; Provisional
Probab=94.20 E-value=0.066 Score=53.69 Aligned_cols=40 Identities=28% Similarity=0.440 Sum_probs=35.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
-+.|.++.+|.|||+++.|+|...|+.|++|+++.+....
T Consensus 187 ~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~ 226 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSS 226 (428)
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCH
Confidence 4555569999999999999999999999999999988754
No 367
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=94.19 E-value=0.17 Score=49.08 Aligned_cols=41 Identities=24% Similarity=0.394 Sum_probs=35.4
Q ss_pred eEEEEEe-CCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSS-CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S-~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+||.|-+ .-||+|||-++..||..|.++|++|.+|-=-..+
T Consensus 57 PVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 57 PVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred CEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 5777766 4699999999999999999999999999876654
No 368
>PTZ00035 Rad51 protein; Provisional
Probab=94.18 E-value=0.14 Score=49.78 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=29.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHh------CCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~------~G~rVllID~D~ 212 (370)
.++.++ |..|+|||+++..++..... .+.+|+.||..-
T Consensus 119 ~iteI~-G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 119 SITELF-GEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred eEEEEE-CCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 455555 89999999999999877542 466999999864
No 369
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=94.16 E-value=0.71 Score=39.98 Aligned_cols=67 Identities=13% Similarity=0.048 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|||+......+.-.....+|.+++|...+. .++..+. ..+..+... +.+++ +|.|+++..
T Consensus 48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~pii-lvgnK~Dl~ 118 (174)
T cd01871 48 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLR 118 (174)
T ss_pred EEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEeeChhhc
Confidence 4678899998543222222222345788888876543 4566654 344444432 45544 899999863
No 370
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.16 E-value=0.083 Score=53.41 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=33.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.+.++.+|+||||++.++|..+++.|.+|++|+.+.
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE 132 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE 132 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC
Confidence 34455599999999999999999999999999999874
No 371
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.14 E-value=0.14 Score=41.04 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=34.5
Q ss_pred EEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC-----CCCeEEEEEcCCc
Q 017486 283 YLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCH 345 (370)
Q Consensus 283 ~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~v~ 345 (370)
+.+.|++............+..+|.+++|..... .++..+.++++.+... ++|+ -+|.|+.+
T Consensus 52 ~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~pi-ilv~nK~D 119 (119)
T PF08477_consen 52 LQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPI-ILVGNKSD 119 (119)
T ss_dssp EEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEE-EEEEE-TC
T ss_pred EEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCE-EEEEeccC
Confidence 7788887432111110111445699999986555 4577766665555433 3554 48888864
No 372
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=94.12 E-value=0.73 Score=38.17 Aligned_cols=66 Identities=12% Similarity=0.013 Sum_probs=36.8
Q ss_pred CCCcEEEEcCCCCCChH--------HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI--------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~--------~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+++.++|+|+..... .........+|.+++|.......-..-.+.+.. ..+.++ -+|+|+++..
T Consensus 47 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~v-i~v~nK~D~~ 120 (157)
T cd04164 47 GGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPI-IVVLNKSDLL 120 (157)
T ss_pred CCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCE-EEEEEchhcC
Confidence 45678999998532110 011122345788999888774322222222222 335554 4899999864
No 373
>PRK08118 topology modulation protein; Reviewed
Probab=94.12 E-value=0.065 Score=46.50 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+.|.|+ |-+|+||||+|..|+..+
T Consensus 2 ~rI~I~-G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILI-GSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 456677 899999999999998766
No 374
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.11 E-value=0.087 Score=51.83 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.+.++.+|+||||++..+|..+++.|.+|++|+...
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 34455599999999999999999999999999999864
No 375
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.10 E-value=1.2 Score=39.59 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=26.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~ 210 (370)
.|.|+ |..|+||||+...|+..+... +.+++.++-
T Consensus 3 lilI~-GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 3 LVLVT-GPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 45555 999999999999988888754 456666554
No 376
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.10 E-value=0.9 Score=37.50 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=35.8
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
...+.++|+|...............+|.+++|..... .++......+..+.+ .+.++ -+|.|+.+..
T Consensus 43 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D~~ 114 (159)
T cd04159 43 NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPL-LVLGNKNDLP 114 (159)
T ss_pred CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCE-EEEEeCcccc
Confidence 3567888888532211121122334688888877654 334433333333322 35564 4889998853
No 377
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=94.09 E-value=0.15 Score=51.24 Aligned_cols=169 Identities=17% Similarity=0.217 Sum_probs=84.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc----------ccccC-----CCCCceee
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR----------LLEMN-----PEKRTIIP 239 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~----------~~~~~-----~~~~~i~~ 239 (370)
.|++.+.-..+|||++++.|...++++|++|.=+= .|+-++..+.-.+.. +.... ...-.+-|
T Consensus 3 ~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~PFK--~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLKP 80 (486)
T COG1492 3 AIMVQGTTSDAGKSFLVAGLCRILARRGYRVAPFK--SQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLKP 80 (486)
T ss_pred ccEEEeccCCcchhhhhhhhhHHHHhcCCccCCCc--hhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEEee
Confidence 57777788888899999999999999999986211 111122222111111 00000 00111222
Q ss_pred cccCCeeEEecCCCCccccc-----cCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH--------HHHhhHhCCC
Q 017486 240 TEYLGVKLVSFGFSGQGRAI-----MRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--------LTLCQVVPLT 306 (370)
Q Consensus 240 ~~~~~l~vl~~g~~~~~~~~-----~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~--------l~~~~~~~~d 306 (370)
....+..++-.|........ ..-+.+...+.+.++.+. +.||+|++-...+-.... +.++.... .
T Consensus 81 ~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~d-a 158 (486)
T COG1492 81 CSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGVAEIAD-A 158 (486)
T ss_pred cCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceeeehhcC-C
Confidence 33345666655543211110 011223345555555554 899999999876533221 22222221 2
Q ss_pred eEEEEecCCcc-hHHHHHHHHHHHHcC-CCCeEEEEEcCCccC
Q 017486 307 AAVIVTTPQKL-AFIDVAKGVRMFSKL-KVPCIAVVENMCHFD 347 (370)
Q Consensus 307 ~viiV~~p~~~-s~~~~~~~~~~l~~~-~~~~~gvV~N~v~~~ 347 (370)
-+|+|..=+.- .+..+.-++..|... ...+-|+|+|+.+-+
T Consensus 159 pvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd 201 (486)
T COG1492 159 PVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGD 201 (486)
T ss_pred CEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCC
Confidence 35666665552 122333334444322 345678888876543
No 378
>PLN02759 Formate--tetrahydrofolate ligase
Probab=94.07 E-value=0.11 Score=53.34 Aligned_cols=52 Identities=23% Similarity=0.237 Sum_probs=42.6
Q ss_pred CCeEEEEEeCC---CCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCCCCCCcCCCCccc
Q 017486 172 ISNIVAVSSCK---GGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENR 226 (370)
Q Consensus 172 ~~kvI~v~S~k---GGvGKTTla~nLA~~LA~-~G~rVllID~D~~~~sl~~~l~~~~~ 226 (370)
.+|.|.||+-. -|+||||++..|+.+|.+ .|+++++. ++.||+.-.||....
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiKGG 123 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC---LRQPSQGPTFGIKGG 123 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE---eecCCcCCcCCcccc
Confidence 35677776644 499999999999999997 89999864 788999888887654
No 379
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.05 E-value=0.38 Score=42.21 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=38.1
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecC-CcchHHHHH-HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p-~~~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
.+++.|+|++..-....+.......+|.+++|... +..++..+. ..+..+.+. +.+ +-+|.|+++-.
T Consensus 47 ~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~ 117 (189)
T cd04134 47 HIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVK-LVLVALKCDLR 117 (189)
T ss_pred EEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEEEChhhc
Confidence 46788999985322111211123346888877653 334566554 345555442 455 45899999864
No 380
>PLN02924 thymidylate kinase
Probab=94.04 E-value=0.1 Score=47.44 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=33.5
Q ss_pred cCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 170 ~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
.++++.|+|- |-.|+||||.+..|+..|...|++|.++.
T Consensus 13 ~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~~g~~v~~~~ 51 (220)
T PLN02924 13 ESRGALIVLE-GLDRSGKSTQCAKLVSFLKGLGVAAELWR 51 (220)
T ss_pred CCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceeee
Confidence 3456788887 99999999999999999999999987654
No 381
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=94.03 E-value=0.057 Score=54.89 Aligned_cols=51 Identities=24% Similarity=0.361 Sum_probs=35.1
Q ss_pred CCeEEEEEeCC---CCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc
Q 017486 172 ISNIVAVSSCK---GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 225 (370)
Q Consensus 172 ~~kvI~v~S~k---GGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~ 225 (370)
.+|.|.||+-. -|+||||++..|+.+|++.|+++.+. ++.||+.-.||...
T Consensus 53 ~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~---lRePSlGP~fG~KG 106 (557)
T PF01268_consen 53 DGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAA---LREPSLGPVFGIKG 106 (557)
T ss_dssp --EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEE---E----CHHHHCST-
T ss_pred CCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEE---EecCCCCCccCccc
Confidence 46788888755 49999999999999999999998865 78889888888763
No 382
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=94.03 E-value=0.88 Score=44.03 Aligned_cols=66 Identities=15% Similarity=0.058 Sum_probs=40.2
Q ss_pred CcEEEEcCCCCCCh-------HHHHHhhHhCCCeEEEEecCCc----chHHHHHHHHHHHHcC-----CCCeEEEEEcCC
Q 017486 281 LDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQK----LAFIDVAKGVRMFSKL-----KVPCIAVVENMC 344 (370)
Q Consensus 281 yD~VIIDtpp~~~~-------~~l~~~~~~~~d~viiV~~p~~----~s~~~~~~~~~~l~~~-----~~~~~gvV~N~v 344 (370)
+.++|+|+|.-... ....+..+..++.+++|++... .++++...+.+.+... +.+++ +|+|++
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~I-IV~NK~ 283 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRI-VVLNKI 283 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEE-EEEeCc
Confidence 57899999863211 1111222334688899988765 3556666665555543 44554 899999
Q ss_pred ccC
Q 017486 345 HFD 347 (370)
Q Consensus 345 ~~~ 347 (370)
+..
T Consensus 284 DL~ 286 (329)
T TIGR02729 284 DLL 286 (329)
T ss_pred cCC
Confidence 963
No 383
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=94.02 E-value=0.76 Score=39.27 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=36.8
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHH-HHHHHHHc--CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSK--LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~-~~~~~l~~--~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+.-....+....+..+|.+++|...+ ..++..+. ..+..+.+ .+.|++ +|.|+.+-.
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 118 (175)
T cd01870 47 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLR 118 (175)
T ss_pred EEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEeeChhcc
Confidence 3467889999853211111111233467777765544 33455553 34444444 255654 899998853
No 384
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.02 E-value=0.1 Score=47.67 Aligned_cols=39 Identities=33% Similarity=0.310 Sum_probs=31.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEE-eeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVll-ID~D~ 212 (370)
+.+|++. |..|+||||++..|+..+...+..+.+ |.+|-
T Consensus 33 ~~iigi~-G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~ 72 (229)
T PRK09270 33 RTIVGIA-GPPGAGKSTLAEFLEALLQQDGELPAIQVPMDG 72 (229)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhhhccCCceEEEeccc
Confidence 3477777 999999999999999999887766666 66664
No 385
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=93.99 E-value=1.1 Score=43.70 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCCCh---H-----HHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGD---I-----QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~---~-----~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
...++|+|||+...+ . ..+...+..+|.+++|++.... +........+.+.+. +.+++ +|+|+++..
T Consensus 236 ~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piI-lV~NK~Dl~ 314 (351)
T TIGR03156 236 GGEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQL-LVYNKIDLL 314 (351)
T ss_pred CceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEE-EEEEeecCC
Confidence 457899999854221 1 1111223457999999876543 333443333444433 55655 999999964
No 386
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=93.98 E-value=0.4 Score=42.40 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.1
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLA 195 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA 195 (370)
.|++. |+.|+||||+.-.|.
T Consensus 2 ~i~lv-G~~g~GKSsl~N~il 21 (196)
T cd01852 2 RLVLV-GKTGAGKSATGNTIL 21 (196)
T ss_pred EEEEE-CCCCCCHHHHHHHhh
Confidence 46777 999999999876663
No 387
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=93.95 E-value=1.2 Score=44.20 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=37.1
Q ss_pred cEEEEcCCCCCChH-------HHHHhhHhCCCeEEEEecCC----cchHHHHHHHHHHHHcC-----CCCeEEEEEcCCc
Q 017486 282 DYLVIDMPPGTGDI-------QLTLCQVVPLTAAVIVTTPQ----KLAFIDVAKGVRMFSKL-----KVPCIAVVENMCH 345 (370)
Q Consensus 282 D~VIIDtpp~~~~~-------~l~~~~~~~~d~viiV~~p~----~~s~~~~~~~~~~l~~~-----~~~~~gvV~N~v~ 345 (370)
.++++|+|.-.... ...+..+..+|.+++|+... .....+...+++.+.+. +.+.+ +|+|+++
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~I-lVlNKiD 286 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRW-LVFNKID 286 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEE-EEEeCCc
Confidence 48888988633210 11112244568888887654 23445556666666553 34544 7889988
Q ss_pred cC
Q 017486 346 FD 347 (370)
Q Consensus 346 ~~ 347 (370)
..
T Consensus 287 l~ 288 (390)
T PRK12298 287 LL 288 (390)
T ss_pred cC
Confidence 63
No 388
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=93.93 E-value=0.06 Score=53.12 Aligned_cols=52 Identities=23% Similarity=0.355 Sum_probs=43.6
Q ss_pred CCeEEEEEeCCC---CChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc
Q 017486 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR 226 (370)
Q Consensus 172 ~~kvI~v~S~kG---GvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~ 226 (370)
.+|.|.||+-.+ |+||||++..|+.+|.+.|+++.+ ..+.||+.-.||....
T Consensus 51 ~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~---alRePSlGP~fGiKGG 105 (554)
T COG2759 51 DGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAII---ALREPSLGPVFGIKGG 105 (554)
T ss_pred CceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchheE---EeccCCcCCccccccc
Confidence 467888877554 999999999999999999999885 4788899888887654
No 389
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.93 E-value=0.15 Score=43.30 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.++|+|+..............+|.+++|...+. .+..... ..+..+... +.++ -+|.|+++..
T Consensus 46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~ 117 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPI-ILVGTKIDLR 117 (171)
T ss_pred EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEEccHHhh
Confidence 45678999999643211111111234688888888765 4444433 234444433 3554 4899999854
No 390
>PRK08760 replicative DNA helicase; Provisional
Probab=93.92 E-value=0.076 Score=54.01 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=33.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~~ 214 (370)
-+.+.++.+|+|||+++.|+|...|. .|++|+++.++...
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 45555699999999999999999885 59999999998754
No 391
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.91 E-value=0.097 Score=47.52 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=32.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.++ |..|+|||+++..++..+.+.|.++..+|++.
T Consensus 44 ~~~l~-G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 44 FFYLW-GEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 44455 99999999999999999988899999999865
No 392
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=93.87 E-value=0.29 Score=39.61 Aligned_cols=69 Identities=13% Similarity=0.053 Sum_probs=39.8
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcch-HHHHHH----HHHHHHcCCCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-FIDVAK----GVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s-~~~~~~----~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..+++.++|+|+..............+|.+++|....... ...... ........+.+++ +|+|+++...
T Consensus 43 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-vv~nk~D~~~ 116 (157)
T cd00882 43 KKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPII-LVGNKIDLPE 116 (157)
T ss_pred EEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEE-EEEecccccc
Confidence 4678999999863322222222344568888887766643 333332 2223334466654 8889988643
No 393
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.85 E-value=0.52 Score=39.28 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=41.3
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
.+.+.++|+|............+..+|.+++|..... .++.++......+.+. +.++ -+|.|+++..
T Consensus 46 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~ 117 (160)
T cd00876 46 TYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPI-VLVGNKCDLE 117 (160)
T ss_pred EEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECCccc
Confidence 4678899998743322232233445788888876543 4555666665555432 4554 4999999864
No 394
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=93.82 E-value=1.4 Score=40.62 Aligned_cols=164 Identities=16% Similarity=0.201 Sum_probs=84.5
Q ss_pred CCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--ccccCCCC---------CceeecccCCeeEEec
Q 017486 182 KGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LLEMNPEK---------RTIIPTEYLGVKLVSF 250 (370)
Q Consensus 182 kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~~~~~~~~---------~~i~~~~~~~l~vl~~ 250 (370)
-.|.||=.+|+.++..|..+|++|..+=.||+-+--+-.+++-.. +.-.++.. +.........-.-+..
T Consensus 10 ~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~~~~niTt 89 (255)
T cd03113 10 VSSLGKGITAASLGRLLKARGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLSRDNNITT 89 (255)
T ss_pred ccCcchHHHHHHHHHHHHHCCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCcCccCcCh
Confidence 358899999999999999999999999999986443333332211 00000000 0000000000000000
Q ss_pred CCC----------C--ccccccCCchHHHHHHHHHHhcC-CCCCcEEEEcCCCCCChHHH-----HHhhHh---CCCeEE
Q 017486 251 GFS----------G--QGRAIMRGPMVSGVINQLLTTTE-WGELDYLVIDMPPGTGDIQL-----TLCQVV---PLTAAV 309 (370)
Q Consensus 251 g~~----------~--~~~~~~~~~~~~~~l~~ll~~~~-~~~yD~VIIDtpp~~~~~~l-----~~~~~~---~~d~vi 309 (370)
|.. + .+..+---|..-..+++.+..+. ...+|++|+......+|..- ++.++. ..+.++
T Consensus 90 Gkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n~~ 169 (255)
T cd03113 90 GKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVL 169 (255)
T ss_pred HHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCcEE
Confidence 000 0 00000000112233444444332 36899999999987765311 111111 112222
Q ss_pred ------EE--ecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCc
Q 017486 310 ------IV--TTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 345 (370)
Q Consensus 310 ------iV--~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~ 345 (370)
++ -..+...-.-++..++.|++.|++..++|+|.-+
T Consensus 170 ~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~ 213 (255)
T cd03113 170 FIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEK 213 (255)
T ss_pred EEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCC
Confidence 22 2234444455788999999999999999999833
No 395
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.82 E-value=0.14 Score=44.72 Aligned_cols=34 Identities=41% Similarity=0.515 Sum_probs=24.5
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
|-|..+ .|=||||.|..+|...+-.|.||+++=.
T Consensus 6 i~vytG-~GKGKTTAAlGlalRA~G~G~rV~ivQF 39 (172)
T PF02572_consen 6 IQVYTG-DGKGKTTAALGLALRAAGHGMRVLIVQF 39 (172)
T ss_dssp EEEEES-SSS-HHHHHHHHHHHHHCTT--EEEEES
T ss_pred EEEEeC-CCCCchHHHHHHHHHHHhCCCEEEEEEE
Confidence 444423 4669999999999999999999999854
No 396
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=93.81 E-value=2.2 Score=39.37 Aligned_cols=69 Identities=20% Similarity=0.096 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCCCC----h--HHH-------HHhhHh-CCCeEEEEecCCc-chHHHHHHHHHHHHcCCCCeEEEEEcCC
Q 017486 280 ELDYLVIDMPPGTG----D--IQL-------TLCQVV-PLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKVPCIAVVENMC 344 (370)
Q Consensus 280 ~yD~VIIDtpp~~~----~--~~l-------~~~~~~-~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~~~~~gvV~N~v 344 (370)
..|+.|||+|.-.. + ..+ ....+. ..+.+++|+.... ..-.+..++.+.+...+.+.+ +|+|++
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti-~ViTK~ 202 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTI-GVITKL 202 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEE-EEEECC
Confidence 48999999996431 1 101 111111 2345555654332 233455688888888888876 678999
Q ss_pred ccCCC
Q 017486 345 HFDAD 349 (370)
Q Consensus 345 ~~~~~ 349 (370)
+....
T Consensus 203 D~~~~ 207 (240)
T smart00053 203 DLMDE 207 (240)
T ss_pred CCCCc
Confidence 87543
No 397
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=93.77 E-value=0.16 Score=54.38 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=33.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.|....+-.|+||||++.+++...++.|.+|+.||+.-.
T Consensus 61 siteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t 99 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHA 99 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc
Confidence 444455999999999999999988899999999999764
No 398
>PRK08006 replicative DNA helicase; Provisional
Probab=93.75 E-value=0.095 Score=53.22 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=33.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~~ 214 (370)
-+.|..+.+|.|||++|.|+|..+| +.|++|+++.+....
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~ 265 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPG 265 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 4455559999999999999999998 469999999998754
No 399
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.75 E-value=0.77 Score=38.59 Aligned_cols=68 Identities=9% Similarity=0.085 Sum_probs=41.4
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC--------CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--------KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~--------~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+.-....+.......+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++..
T Consensus 47 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 123 (168)
T cd04119 47 KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDLT 123 (168)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCce-EEEEEEchhcc
Confidence 45788999998642222222222345789999887654 3456666666555432 233 55899999864
No 400
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.75 E-value=0.073 Score=45.72 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=25.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.|.++ |..|+||||+|..||..+ |. .++|.|.
T Consensus 5 ~~i~l~-G~~GsGKstla~~La~~l---~~--~~~d~d~ 37 (175)
T PRK00131 5 PNIVLI-GFMGAGKSTIGRLLAKRL---GY--DFIDTDH 37 (175)
T ss_pred CeEEEE-cCCCCCHHHHHHHHHHHh---CC--CEEEChH
Confidence 456666 999999999999999987 43 4456664
No 401
>PRK03003 GTP-binding protein Der; Reviewed
Probab=93.73 E-value=0.44 Score=48.45 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=29.6
Q ss_pred hCCCeEEEEecCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 303 VPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 303 ~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+|.+++|...... +..+. +.+..+...+.+++ +|+|+++-.
T Consensus 292 ~~ad~vilV~Da~~~~s~~~~-~~~~~~~~~~~piI-iV~NK~Dl~ 335 (472)
T PRK03003 292 EAAEVAVVLIDASEPISEQDQ-RVLSMVIEAGRALV-LAFNKWDLV 335 (472)
T ss_pred hcCCEEEEEEeCCCCCCHHHH-HHHHHHHHcCCCEE-EEEECcccC
Confidence 457999999887654 33333 45666666677755 899999864
No 402
>PRK11058 GTPase HflX; Provisional
Probab=93.72 E-value=1.4 Score=44.20 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=37.6
Q ss_pred cEEEEcCCCCCCh--------HHHHHhhHhCCCeEEEEecCCcch-HHHH---HHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 282 DYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLA-FIDV---AKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 282 D~VIIDtpp~~~~--------~~l~~~~~~~~d~viiV~~p~~~s-~~~~---~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.++|+|||..... ...+......+|.+++|.+..... .... .+.++.+...+.+++ +|+||++..
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvI-iV~NKiDL~ 322 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTL-LVMNKIDML 322 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEE-EEEEcccCC
Confidence 5788899864221 111112234579898888765543 2333 344454444456655 899999963
No 403
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=93.71 E-value=0.72 Score=49.77 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=41.1
Q ss_pred CCCcEEEEcCCCCCC----------hHHHHHhh--HhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTG----------DIQLTLCQ--VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~----------~~~l~~~~--~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
+.+++.++|+|...+ +....... ...+|.+++|+++... +........+.+.+.|++ +|+||.+.
T Consensus 48 ~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvI-vVlNK~Dl 124 (772)
T PRK09554 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCI-VALNMLDI 124 (772)
T ss_pred CceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEE-EEEEchhh
Confidence 567899999996321 11111111 1256889989887653 333345566777888866 89999986
Q ss_pred C
Q 017486 347 D 347 (370)
Q Consensus 347 ~ 347 (370)
.
T Consensus 125 ~ 125 (772)
T PRK09554 125 A 125 (772)
T ss_pred h
Confidence 3
No 404
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.70 E-value=0.13 Score=48.84 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=33.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~--G~rVllID~D~~~ 214 (370)
+.+|+|. |-.|+||||++..|...+.+. +.+|.++..|-..
T Consensus 62 p~IIGIa-G~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISIA-GSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 3577877 999999999999999888743 4579999888644
No 405
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=93.69 E-value=0.7 Score=38.58 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=39.0
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.++|+|.......+.......+|.+++|..... .++..+...++.+.+. +.+ +-+|.|+.+..
T Consensus 48 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~ 118 (162)
T cd04123 48 RIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNIS-LVIVGNKIDLE 118 (162)
T ss_pred EEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 3467889988632222222222335788888876543 3555565655555543 344 44889999864
No 406
>PF05729 NACHT: NACHT domain
Probab=93.69 E-value=0.079 Score=44.84 Aligned_cols=27 Identities=37% Similarity=0.386 Sum_probs=22.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMG 202 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G 202 (370)
++.|+ |.+|.||||++..++..++..+
T Consensus 2 ~l~I~-G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWIS-GEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEE-CCCCCChHHHHHHHHHHHHhcC
Confidence 44444 9999999999999999999765
No 407
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.69 E-value=0.1 Score=52.34 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=34.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~~ 214 (370)
-+.+.++.+|+|||+++.++|..++. .|++|+++.++...
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~ 236 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSA 236 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCH
Confidence 45555699999999999999999886 69999999998754
No 408
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.64 E-value=0.099 Score=46.88 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=29.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+.+|+|+ |..|+||||++..|+..+.. ..+.++..|..
T Consensus 6 g~vi~I~-G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 6 GIIIGIG-GGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 4577777 99999999999999987754 45666766654
No 409
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.59 E-value=0.1 Score=49.88 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=32.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+-+.++ |..|+|||.++..+|..+++.|++|.++.+.
T Consensus 157 ~gl~L~-G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLY-GDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 455565 8999999999999999999999999988764
No 410
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.52 E-value=0.42 Score=40.63 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=36.2
Q ss_pred CcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHH-cC------CCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-KL------KVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~-~~------~~~~~gvV~N~v~~~ 347 (370)
+-+.++|+|.......+....+..+|.++++..... .++.......+.+. .. +.|++ +|.|+.+..
T Consensus 49 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 122 (172)
T cd01862 49 VTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFV-VLGNKIDLE 122 (172)
T ss_pred EEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEE-EEEECcccc
Confidence 346689997532222222222344788888876543 34444544433322 11 45655 888998864
No 411
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=93.51 E-value=1.5 Score=37.19 Aligned_cols=68 Identities=9% Similarity=0.040 Sum_probs=39.8
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHH-Hc---CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF-SK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l-~~---~~~~~~gvV~N~v~~~ 347 (370)
+.+.+.|+|+|+......+.......+|.+++|..... .++.++.+.+..+ .. .+.+ +-++.|+.+-.
T Consensus 42 ~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 114 (159)
T cd04150 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAV-LLVFANKQDLP 114 (159)
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCC-EEEEEECCCCC
Confidence 34668999998532211122222445799999988754 3456565544433 22 1345 45899999863
No 412
>PF12846 AAA_10: AAA-like domain
Probab=93.49 E-value=0.11 Score=48.66 Aligned_cols=32 Identities=44% Similarity=0.510 Sum_probs=29.6
Q ss_pred eCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 180 SCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 180 S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.|+.|+||||++.++...+...|.+++++|-.
T Consensus 7 ~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 7 LGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 39999999999999999999999999999764
No 413
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=93.49 E-value=0.11 Score=46.64 Aligned_cols=34 Identities=41% Similarity=0.461 Sum_probs=25.9
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
|+.+|++| |+.|+||||+|-- +++.|. -+||+|-
T Consensus 1 ~~~iIglT-G~igsGKStva~~----~~~~G~--~vidaD~ 34 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVAKI----LAELGF--PVIDADD 34 (201)
T ss_pred CceEEEEe-cCCCCCHHHHHHH----HHHcCC--eEEEccH
Confidence 56799999 9999999999654 444454 5567775
No 414
>PRK05748 replicative DNA helicase; Provisional
Probab=93.48 E-value=0.11 Score=52.39 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=34.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~~ 214 (370)
-+.+.++.+|+|||+++.++|...|. .|++|+++.+....
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~ 244 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGA 244 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCH
Confidence 45555699999999999999999884 69999999998754
No 415
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=93.47 E-value=0.32 Score=52.15 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=40.7
Q ss_pred CCCcEEEEcCCCCC-------ChHHH----HHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGT-------GDIQL----TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~-------~~~~l----~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
...++.++|||+.. +...+ +...+..+|.+++|..........-.+.+..+.+.+.+++ +|+|+++-.
T Consensus 496 ~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piI-iV~NK~DL~ 574 (712)
T PRK09518 496 DGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALV-LVFNKWDLM 574 (712)
T ss_pred CCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEEchhcC
Confidence 44568899998521 11111 1112345788999887765432333345666666777766 899999853
No 416
>PRK07933 thymidylate kinase; Validated
Probab=93.44 E-value=0.13 Score=46.55 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=31.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.|+|- |--|+||||++..|+..|...|++|.++.-.
T Consensus 2 ~IviE-G~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIE-GVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45555 8889999999999999999999999998764
No 417
>COG4240 Predicted kinase [General function prediction only]
Probab=93.42 E-value=0.11 Score=47.08 Aligned_cols=38 Identities=29% Similarity=0.345 Sum_probs=33.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCC-CcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G-~rVllID~D~ 212 (370)
.|...||-.|+||||+++.+-..|++.| .||+-..+|-
T Consensus 51 li~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDD 89 (300)
T COG4240 51 LIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDD 89 (300)
T ss_pred eEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhh
Confidence 5556669999999999999999999988 7999888864
No 418
>PRK08840 replicative DNA helicase; Provisional
Probab=93.40 E-value=0.12 Score=52.46 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=33.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~~ 214 (370)
-+.|.++.+|+|||+++.|+|...|. .|++|+++.+.+..
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~ 258 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPA 258 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence 45555699999999999999999984 69999999998754
No 419
>PRK08727 hypothetical protein; Validated
Probab=93.35 E-value=0.11 Score=47.68 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=32.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.++ |..|+|||.++..++..+.+.|++|..+.++-
T Consensus 43 ~l~l~-G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 43 WLYLS-GPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 35555 89999999999999999999999999998753
No 420
>PRK05642 DNA replication initiation factor; Validated
Probab=93.33 E-value=0.1 Score=47.82 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=30.9
Q ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 178 VSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 178 v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+..|..|+|||.++..++..+.+.|++|+.++++-
T Consensus 49 ~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 34499999999999999999988899999999864
No 421
>PRK06904 replicative DNA helicase; Validated
Probab=93.30 E-value=0.12 Score=52.59 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=33.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~~ 214 (370)
-+.|.++.+|+|||+++.|+|...|. .|++|+++-+.+..
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~ 262 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA 262 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 35555699999999999999999885 59999999998754
No 422
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=1.8 Score=41.24 Aligned_cols=141 Identities=17% Similarity=0.213 Sum_probs=90.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
.+++.+.+.---+||=|++..|..++-..|+++..+-.+..+ + +. ...|+-+=
T Consensus 148 a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg--i--l~-------------------~~~gvvvd---- 200 (339)
T COG3367 148 AKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTG--I--LI-------------------ADDGVVVD---- 200 (339)
T ss_pred CcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCcee--e--EE-------------------ecCceEec----
Confidence 568999999999999999999999999999999888776532 1 00 00111100
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH----HHHHhhHhCCCeEEEEecCCcchHH--------
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI----QLTLCQVVPLTAAVIVTTPQKLAFI-------- 320 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~----~l~~~~~~~~d~viiV~~p~~~s~~-------- 320 (370)
.+........++.+.-.....++|||+|-.-.++... .+.+......|.++++-.|+.....
T Consensus 201 ------av~~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~ip~ 274 (339)
T COG3367 201 ------AVVMDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEPIPP 274 (339)
T ss_pred ------chhHHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCcCCC
Confidence 0111223445555554443248999999987765422 2233333456999999888775433
Q ss_pred --HHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 321 --DVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 321 --~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+...+...+. +.+++|+.+|--+.+.
T Consensus 275 leevi~l~e~l~--~a~Vvgi~lNtr~~dE 302 (339)
T COG3367 275 LEEVIALYELLS--NAKVVGIALNTRNLDE 302 (339)
T ss_pred HHHHHHHHHHcc--CCcEEEEEecccccCh
Confidence 4444444443 4888999999766543
No 423
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=93.24 E-value=0.13 Score=54.36 Aligned_cols=45 Identities=27% Similarity=0.284 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl 217 (370)
.+++|.++ |..|+||||+|..|+..|...|..+.++|.|.-+..+
T Consensus 459 ~~~~i~~~-G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l 503 (632)
T PRK05506 459 KPATVWFT-GLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGL 503 (632)
T ss_pred CcEEEEec-CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhcc
Confidence 35566665 9999999999999999998889999999999866433
No 424
>PRK04040 adenylate kinase; Provisional
Probab=93.23 E-value=0.13 Score=45.62 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=24.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcE
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rV 205 (370)
+++|+|+ |..|+||||++..|+..+. .+.++
T Consensus 2 ~~~i~v~-G~pG~GKtt~~~~l~~~l~-~~~~~ 32 (188)
T PRK04040 2 MKVVVVT-GVPGVGKTTVLNKALEKLK-EDYKI 32 (188)
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHhc-cCCeE
Confidence 4677777 9999999999999999885 24444
No 425
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=93.16 E-value=1.7 Score=36.76 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecC-CcchHHHHHHHHHHHHcCC--CCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+++......+.......+|.+++|... +..++..+.+.++.+.+.. ...+-+|.|+.+..
T Consensus 48 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 48 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 35678899975332222222223456888888764 4457777777777665432 12345889998853
No 426
>PRK06547 hypothetical protein; Provisional
Probab=93.10 E-value=0.12 Score=45.14 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=25.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+.+|+|+ |..|+||||+|..||..+ | +.++++|-.
T Consensus 15 ~~~i~i~-G~~GsGKTt~a~~l~~~~---~--~~~~~~d~~ 49 (172)
T PRK06547 15 MITVLID-GRSGSGKTTLAGALAART---G--FQLVHLDDL 49 (172)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHh---C--CCeecccce
Confidence 4577777 899999999999998864 3 445566643
No 427
>PLN03118 Rab family protein; Provisional
Probab=93.09 E-value=0.43 Score=42.65 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=38.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHH-HHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGV-RMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~-~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+....+..+|.+++|..... .++..+...+ ..+.. .+.++ -+|.|+.+..
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~-ilv~NK~Dl~ 133 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK-MLVGNKVDRE 133 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcccc
Confidence 4678999999643322332333445788888876654 3455554432 22221 23444 4788998863
No 428
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=93.08 E-value=0.2 Score=50.50 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=50.5
Q ss_pred CCCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchH-------HHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 278 WGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
++.+.+.|||||. ..+.. -....+..+|.+++|+.+..--+ ..+++.+..+...+++.+-+++|+.+.
T Consensus 82 ~~~~~i~lIDtPG-h~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 82 TPKYYFTIIDAPG-HRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred cCCeEEEEEECCC-hHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 4778999999995 43322 22333456799999998776432 467888888999999988899999994
No 429
>PRK07261 topology modulation protein; Provisional
Probab=93.08 E-value=0.13 Score=44.81 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~L 198 (370)
.|+|+ |.+|+||||+|..|+..+
T Consensus 2 ri~i~-G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAII-GYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHh
Confidence 46666 899999999999987654
No 430
>PRK06893 DNA replication initiation factor; Validated
Probab=93.06 E-value=0.13 Score=47.05 Aligned_cols=36 Identities=8% Similarity=-0.087 Sum_probs=31.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.+.++ |..|+|||+++..+|..+.+.|++|..++++
T Consensus 41 ~l~l~-G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIW-GGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 44455 9999999999999999999999999999985
No 431
>PRK06321 replicative DNA helicase; Provisional
Probab=93.04 E-value=0.14 Score=51.97 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=33.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~~ 214 (370)
-+.|.++.+|+|||+++.++|..+| +.|++|+++.+....
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 3455559999999999999999988 469999999988754
No 432
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=93.03 E-value=0.15 Score=52.17 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=42.5
Q ss_pred CCeEEEEEeCC---CCChHHHHHHHHHHHHH-hCCCcEEEeeCCCCCCCCCcCCCCccc
Q 017486 172 ISNIVAVSSCK---GGVGKSTVAVNLAYTLA-GMGARVGIFDADVYGPSLPTMVSPENR 226 (370)
Q Consensus 172 ~~kvI~v~S~k---GGvGKTTla~nLA~~LA-~~G~rVllID~D~~~~sl~~~l~~~~~ 226 (370)
.+|.|.|++-. -|+||||++..|+.+|. +.|+++.+. ++.||+.-.||....
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiKGG 122 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTFAC---IRQPSQGPTFGIKGG 122 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceEEE---EecCCcCCcCCcccc
Confidence 35677777654 49999999999999999 789998864 788899888887654
No 433
>PRK06851 hypothetical protein; Provisional
Probab=93.03 E-value=0.35 Score=47.39 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=39.5
Q ss_pred cCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcC
Q 017486 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM 220 (370)
Q Consensus 170 ~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~ 220 (370)
....+++.++ +..|+||||+...++..+.++|.+|.+.=|-..-.++...
T Consensus 211 ~~~~~~~~i~-G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPdslD~v 260 (367)
T PRK06851 211 EGVKNRYFLK-GRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDSLDMV 260 (367)
T ss_pred cccceEEEEe-CCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCcceE
Confidence 3445566666 9999999999999999999999999999886554455443
No 434
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=93.01 E-value=1 Score=38.39 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHH-HHHHHHHc--CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVA-KGVRMFSK--LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~-~~~~~l~~--~~~~~~gvV~N~v~~~ 347 (370)
.|.+-|+|||..-............+|.+++|.... ..++..+. ..+..+.+ .+.+++ +|.|+.+-.
T Consensus 47 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~pii-vv~nK~Dl~ 117 (174)
T cd04135 47 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYL-LVGTQIDLR 117 (174)
T ss_pred EEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE-EEeEchhhh
Confidence 466788999864221111112233457777765443 33555553 33444443 356655 889998853
No 435
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.01 E-value=0.27 Score=47.26 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=29.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh---CC---CcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG---MG---ARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~---~G---~rVllID~D~~ 213 (370)
.|....+..|+||||++.+++...+. .| .+|+.||....
T Consensus 97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 44444499999999999999874432 33 58999999753
No 436
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=92.95 E-value=0.17 Score=50.28 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=32.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+-+|+|. |-.|+||||++..|...+...|.++..|..|-
T Consensus 212 PlIIGIs-G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDD 250 (460)
T PLN03046 212 PLVIGFS-APQGCGKTTLVFALDYLFRVTGRKSATLSIDD 250 (460)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhcccCCceEEEEECC
Confidence 4466666 89999999999999988877788898887664
No 437
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=92.95 E-value=0.4 Score=46.31 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=35.1
Q ss_pred eEEEEEe-CCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSS-CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S-~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+||.|-| .-||+|||-++..||..|.++|++|.+|-=-..+
T Consensus 36 pVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 36 PVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred cEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 4788776 4689999999999999999999999999776544
No 438
>PRK08181 transposase; Validated
Probab=92.91 E-value=0.12 Score=48.41 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=31.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
+-+.++ |..|+|||.++..+|..+.+.|++|+.+.+
T Consensus 107 ~nlll~-Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLF-GPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred ceEEEE-ecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 345555 999999999999999999999999998876
No 439
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.86 E-value=0.17 Score=52.63 Aligned_cols=41 Identities=34% Similarity=0.383 Sum_probs=35.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~~ 214 (370)
+.+|.++ |..|+||||++..||..|.. .|.++.++|.|.-.
T Consensus 392 g~~Ivl~-Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 392 GFTVFFT-GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred CeEEEEE-CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 4467666 99999999999999999987 78889999999754
No 440
>PRK09165 replicative DNA helicase; Provisional
Probab=92.84 E-value=0.16 Score=52.04 Aligned_cols=40 Identities=25% Similarity=0.466 Sum_probs=33.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC---------------CCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM---------------GARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~---------------G~rVllID~D~~~ 214 (370)
-+.+.++.+|+||||++.|+|...|+. |++|+++.+....
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 455556999999999999999999853 7899999988754
No 441
>COG5133 Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=0.37 Score=40.04 Aligned_cols=70 Identities=13% Similarity=0.242 Sum_probs=51.9
Q ss_pred cCCCcccHHHHHHHhccCCCCCCCCCccccCCeeE--EEEecCC-----CeEEEEEEeCCCCCCcHHHHHHHHHHHh
Q 017486 70 EVSTGTAENDVLKALSQIIDPDFGTDIVSCGFVKD--MQINEAL-----GEVSFRLELTTPACPIKDMFEQRANEVV 139 (370)
Q Consensus 70 ~~~~~~~~~~v~~~L~~V~dPel~~div~lGlV~~--v~v~~~~-----~~v~v~l~lt~~~cP~~~~i~~~i~e~L 139 (370)
.+...+++++|.+.++.|.|||-+..+-.++.|.- |.+.++. .-+.|.+++|-+.|.+...|---|+-.|
T Consensus 49 ee~d~id~qeiydLia~I~DPEHPltL~QLsVV~lEdi~v~D~~~~n~i~~v~v~itPTIpHCSmatlIGLcIrvrl 125 (181)
T COG5133 49 EEPDLIDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRL 125 (181)
T ss_pred CCCCCcCHHHHHHHHHhcCCCCCCccHhhcceeeeccccccCCCCCCeeEEEEEEeccCCCchhHHHHhhhheeeee
Confidence 35567899999999999999999998888887754 4443311 1378999999999998766554444444
No 442
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.80 E-value=0.12 Score=44.79 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=18.0
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLA 195 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA 195 (370)
.|+|| |.+|+||||++-.|+
T Consensus 2 ~I~IT-GTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAIT-GTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEe-CCCCCchHHHHHHHH
Confidence 57888 999999999998887
No 443
>COG1084 Predicted GTPase [General function prediction only]
Probab=92.80 E-value=1.4 Score=42.26 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=39.9
Q ss_pred CCCcEEEEcCCCCCCh----------HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHH---Hc-CCCCeEEEEEcCC
Q 017486 279 GELDYLVIDMPPGTGD----------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMF---SK-LKVPCIAVVENMC 344 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~----------~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l---~~-~~~~~~gvV~N~v 344 (370)
+...+-+||||+-++- .+..+...+ .+.++++.+|...+...++.-+..+ +. .+ ..+-+|+|+.
T Consensus 213 ~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl-~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~ 290 (346)
T COG1084 213 GYLRIQVIDTPGLLDRPLEERNEIERQAILALRHL-AGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKI 290 (346)
T ss_pred CCceEEEecCCcccCCChHHhcHHHHHHHHHHHHh-cCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecc
Confidence 4567899999975431 111111122 3777889999887654444444444 33 34 3455999999
Q ss_pred ccC
Q 017486 345 HFD 347 (370)
Q Consensus 345 ~~~ 347 (370)
+-.
T Consensus 291 D~~ 293 (346)
T COG1084 291 DIA 293 (346)
T ss_pred ccc
Confidence 854
No 444
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=92.75 E-value=0.71 Score=44.36 Aligned_cols=42 Identities=33% Similarity=0.540 Sum_probs=36.3
Q ss_pred CeEEEEEe-CCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSS-CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S-~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
..||.|-+ .-||.|||-++..||..|.++|.++.++.=...+
T Consensus 47 vPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 47 VPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred CCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 34777765 4699999999999999999999999999888765
No 445
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.75 E-value=0.14 Score=44.22 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=27.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
++.|.++ |-.|+||||++..||..+ |. -++|.|..
T Consensus 2 ~~~i~~~-G~~GsGKst~~~~la~~l---g~--~~~d~D~~ 36 (171)
T PRK03731 2 TQPLFLV-GARGCGKTTVGMALAQAL---GY--RFVDTDQW 36 (171)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEEccHH
Confidence 4566676 999999999999999877 44 35688753
No 446
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.73 E-value=0.32 Score=47.29 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=30.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh------CCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~------~G~rVllID~D~~ 213 (370)
.|....+..|+|||+++.++|...+. .+.+|+.||+.-.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 45555599999999999999976542 2348999999863
No 447
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.72 E-value=0.12 Score=46.21 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=26.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHHH--------HhCCCcEEEeeC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTL--------AGMGARVGIFDA 210 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~L--------A~~G~rVllID~ 210 (370)
+.+..|-+|+||||+.+.++..+ ...+++++++--
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~ 61 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSP 61 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEES
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecC
Confidence 67778999999999999998888 456888888754
No 448
>PRK06761 hypothetical protein; Provisional
Probab=92.68 E-value=0.16 Score=47.94 Aligned_cols=41 Identities=24% Similarity=0.355 Sum_probs=32.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEE-eeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI-FDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVll-ID~D~~~ 214 (370)
+++|.|+ |..|+||||++..|+..+...|.++-. .+.|...
T Consensus 3 ~~lIvI~-G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~ 44 (282)
T PRK06761 3 TKLIIIE-GLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDH 44 (282)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCC
Confidence 3456555 889999999999999999888888875 5666533
No 449
>PLN02796 D-glycerate 3-kinase
Probab=92.68 E-value=0.18 Score=48.83 Aligned_cols=37 Identities=27% Similarity=0.524 Sum_probs=30.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
-+|+|. |..|+||||++..|+..+...|.++..|-.|
T Consensus 101 liIGI~-G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiD 137 (347)
T PLN02796 101 LVIGIS-APQGCGKTTLVFALVYLFNATGRRAASLSID 137 (347)
T ss_pred EEEEEE-CCCCCcHHHHHHHHHHHhcccCCceeEEEEC
Confidence 466666 8899999999999999998778788777654
No 450
>PRK08116 hypothetical protein; Validated
Probab=92.67 E-value=0.17 Score=47.52 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=30.5
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+.++ |..|+|||.++..+|..+.+.|++|+++++.
T Consensus 117 l~l~-G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 117 LLLW-GSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 4444 8999999999999999999889999999853
No 451
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.66 E-value=0.19 Score=40.82 Aligned_cols=30 Identities=33% Similarity=0.288 Sum_probs=25.0
Q ss_pred eCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 180 SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 180 S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.|..|+||||++..+|..+ |..++-+|+..
T Consensus 4 ~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~ 33 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYL---GFPFIEIDGSE 33 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHT---TSEEEEEETTH
T ss_pred ECcCCCCeeHHHHHHHhhc---ccccccccccc
Confidence 3899999999999999987 56777777764
No 452
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=92.64 E-value=1.1 Score=45.74 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=16.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAY 196 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~ 196 (370)
-|++. +.+++||||+-..|..
T Consensus 161 dV~LV-G~PNAGKSTLln~Ls~ 181 (500)
T PRK12296 161 DVGLV-GFPSAGKSSLISALSA 181 (500)
T ss_pred eEEEE-EcCCCCHHHHHHHHhc
Confidence 45666 9999999999887753
No 453
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.57 E-value=0.087 Score=43.77 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=24.2
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 177 ~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+..|..|+||||++..|+..+. ..+||.|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 45559999999999988876553 66788876
No 454
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=92.57 E-value=1.1 Score=40.40 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=39.5
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC--CCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL--KVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~--~~~~~gvV~N~v~~ 346 (370)
..+.+-|+|+|..-....+.......+|.+|+|.... ..++..+...++.+.+. +.+ +-+|.|+.+.
T Consensus 60 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~p-iilvgNK~Dl 129 (219)
T PLN03071 60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDV 129 (219)
T ss_pred eEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCc-EEEEEEchhh
Confidence 3467889999853221122111133467777776654 45667676666666543 444 4488999885
No 455
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.55 E-value=0.2 Score=44.57 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=28.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
++..+ .|..|+||||+...++..+...|++|+++-.
T Consensus 19 ~~~~l-~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVL-QGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp SEEEE-EESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred eEEEE-EECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 35445 4889999999999999999999999998743
No 456
>PRK05636 replicative DNA helicase; Provisional
Probab=92.54 E-value=0.17 Score=51.74 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=33.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~~ 214 (370)
-+.+.++.+|+|||+++.++|...+ +.|++|+++.+....
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 4555569999999999999999887 568999999888754
No 457
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=92.52 E-value=0.12 Score=48.86 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=26.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.+.+..|..|+||||+|..|+..+. ....+|.|..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHH
Confidence 3444459999999999999988762 5678888764
No 458
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.50 E-value=0.12 Score=43.45 Aligned_cols=33 Identities=39% Similarity=0.396 Sum_probs=25.1
Q ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 177 AVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 177 ~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+..|..|+||||+|..|+..+ | ..++|.|.-.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL---G--APFIDGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCcccc
Confidence 3455999999999999998874 3 3567887654
No 459
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.48 E-value=0.25 Score=43.76 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
++.|+|. |-.|+||||++..|+..|...|+.+....
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~~~~~~~~~~ 38 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQQGRDVVFTR 38 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceeEee
Confidence 3567777 99999999999999999988887766543
No 460
>PRK06921 hypothetical protein; Provisional
Probab=92.48 E-value=0.17 Score=47.35 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=31.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~ 210 (370)
.+.+.++ |..|+|||+++..+|..+.+. |++|+.+.+
T Consensus 117 ~~~l~l~-G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 3456666 899999999999999999987 999998875
No 461
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=92.41 E-value=0.2 Score=48.73 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=34.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllI 208 (370)
|++.+.+.+...|+|||+++.+|++.|.++|.+|.++
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~ 37 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYF 37 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEE
Confidence 6789999999999999999999999999999999875
No 462
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.34 E-value=0.13 Score=45.49 Aligned_cols=32 Identities=28% Similarity=0.285 Sum_probs=25.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
|+|. |..|+||||+|..|+..+. .+.+|..|-
T Consensus 2 i~i~-G~sgsGKTtla~~l~~~~~----~~~~i~~Dd 33 (187)
T cd02024 2 VGIS-GVTNSGKTTLAKLLQRILP----NCCVIHQDD 33 (187)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHcC----CCeEEcccc
Confidence 5565 8999999999999988862 466776664
No 463
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.33 E-value=0.18 Score=46.26 Aligned_cols=37 Identities=22% Similarity=0.292 Sum_probs=32.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.++ |..|+|||+++..++..+.+.|++|..+.+|-
T Consensus 47 ~l~l~-Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 47 YIYLW-SREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 44455 99999999999999999988899999999975
No 464
>PTZ00301 uridine kinase; Provisional
Probab=92.30 E-value=0.3 Score=44.12 Aligned_cols=40 Identities=28% Similarity=0.551 Sum_probs=29.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHh-CCC-cEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGA-RVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~-~G~-rVllID~D~~~ 214 (370)
.+|+|+ |-.|+||||+|..|+..+.. .|- .|.++-.|.+.
T Consensus 4 ~iIgIa-G~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred EEEEEE-CCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 477777 88899999999999988754 343 46577776553
No 465
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=92.30 E-value=0.17 Score=45.04 Aligned_cols=35 Identities=40% Similarity=0.470 Sum_probs=27.4
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
||++|+++ |.-|+||||++..|+. .|. -+||+|.-
T Consensus 1 ~~~~i~lt-G~~gsGKst~~~~l~~----~g~--~~i~~D~~ 35 (194)
T PRK00081 1 MMLIIGLT-GGIGSGKSTVANLFAE----LGA--PVIDADAI 35 (194)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEecHH
Confidence 45688888 8899999999987765 354 57888864
No 466
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=92.28 E-value=1.7 Score=36.92 Aligned_cols=67 Identities=10% Similarity=0.131 Sum_probs=37.7
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEec-CCcchHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTT-PQKLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~-p~~~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+-|+|+|+......+.......++.+++|.. .+..++.......+.+.+ .+.|++ +|.|+.+..
T Consensus 48 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii-iv~nK~D~~ 119 (168)
T cd04177 48 QCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV-LVGNKADLE 119 (168)
T ss_pred EEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE-EEEEChhcc
Confidence 3567888998532211222222334577776654 344466666655554432 356765 788998753
No 467
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.26 E-value=0.57 Score=41.29 Aligned_cols=35 Identities=37% Similarity=0.562 Sum_probs=28.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
.|.|. .-.|-||||-|..+|....-.|+||+++-.
T Consensus 30 li~V~-TG~GKGKTTAAlG~alRa~GhG~rv~vvQF 64 (198)
T COG2109 30 LIIVF-TGNGKGKTTAALGLALRALGHGLRVGVVQF 64 (198)
T ss_pred eEEEE-ecCCCChhHHHHHHHHHHhcCCCEEEEEEE
Confidence 34444 344679999999999999999999999854
No 468
>PRK13947 shikimate kinase; Provisional
Probab=92.22 E-value=0.22 Score=42.90 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=25.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.|.++ |-.|+||||++..||..| |.+ ++|.|.
T Consensus 3 ~I~l~-G~~GsGKst~a~~La~~l---g~~--~id~d~ 34 (171)
T PRK13947 3 NIVLI-GFMGTGKTTVGKRVATTL---SFG--FIDTDK 34 (171)
T ss_pred eEEEE-cCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence 45555 899999999999999877 555 467775
No 469
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=92.20 E-value=2.4 Score=42.49 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=40.6
Q ss_pred CCcEEEEcCCCCCC---h----HHHHHhhHhCCCeEEEEecCCc----chHHHHHHHHHHHHcC-----CCCeEEEEEcC
Q 017486 280 ELDYLVIDMPPGTG---D----IQLTLCQVVPLTAAVIVTTPQK----LAFIDVAKGVRMFSKL-----KVPCIAVVENM 343 (370)
Q Consensus 280 ~yD~VIIDtpp~~~---~----~~l~~~~~~~~d~viiV~~p~~----~s~~~~~~~~~~l~~~-----~~~~~gvV~N~ 343 (370)
.+.++|+|+|.-.. . ....+..+..++.+++|++... ..+.+...+.+.|... +.+.+ +|+|+
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~I-VV~NK 283 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQI-VVANK 283 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEE-EEEeC
Confidence 45789999985321 0 1111222334688888888743 4566666666666653 44544 89999
Q ss_pred Ccc
Q 017486 344 CHF 346 (370)
Q Consensus 344 v~~ 346 (370)
++-
T Consensus 284 ~DL 286 (424)
T PRK12297 284 MDL 286 (424)
T ss_pred CCC
Confidence 995
No 470
>PRK13946 shikimate kinase; Provisional
Probab=92.19 E-value=0.19 Score=44.15 Aligned_cols=33 Identities=42% Similarity=0.476 Sum_probs=26.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.|.++ |-.|+||||++..||..| |.+ ++|.|.
T Consensus 11 ~~I~l~-G~~GsGKsti~~~LA~~L---g~~--~id~D~ 43 (184)
T PRK13946 11 RTVVLV-GLMGAGKSTVGRRLATML---GLP--FLDADT 43 (184)
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence 466666 889999999999999888 555 677774
No 471
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=92.16 E-value=0.83 Score=37.38 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=15.8
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLA 195 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA 195 (370)
.|++. |..|+||||+...+.
T Consensus 3 ki~~~-G~~~~GKstl~~~l~ 22 (161)
T TIGR00231 3 KIVIV-GDPNVGKSTLLNRLL 22 (161)
T ss_pred EEEEE-CCCCCCHHHHHHHHh
Confidence 45666 899999999976664
No 472
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=92.13 E-value=2 Score=40.90 Aligned_cols=141 Identities=19% Similarity=0.283 Sum_probs=83.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g 251 (370)
..++|++.+.-.-+||-|++..|..++.++|.++..+-....+ .+. .. .|+
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTG----imi------------------a~-~Gv------ 161 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTG----IMI------------------AG-YGV------ 161 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHH----HHC------------------HS-EC-------
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCce----EEE------------------ec-CCe------
Confidence 5689999999999999999999999999999998888766432 000 00 010
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-----HHHHHhhHhCCCeEEEEecCCcch--------
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-----IQLTLCQVVPLTAAVIVTTPQKLA-------- 318 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-----~~l~~~~~~~~d~viiV~~p~~~s-------- 318 (370)
.............++.+.-+... +.|+|||-.-.++.. ..+.+..-...|.+|+...|....
T Consensus 162 ----~iDav~~DFvaGavE~~v~~~~~-~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ 236 (301)
T PF07755_consen 162 ----PIDAVPSDFVAGAVEALVPEAAE-EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYP 236 (301)
T ss_dssp -----GGGSBGGGHHHHHHHHHHHHCC-C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC
T ss_pred ----eccchhhhhHHHHHHHHHHhhCc-CCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCC
Confidence 00112334456678887776653 559999998776532 133444444579999999985543
Q ss_pred HHHHHHHHHHHHcC-----CCCeEEEEEcCCcc
Q 017486 319 FIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (370)
Q Consensus 319 ~~~~~~~~~~l~~~-----~~~~~gvV~N~v~~ 346 (370)
+-.+++.++..+.+ +.+++|+-+|-...
T Consensus 237 ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l 269 (301)
T PF07755_consen 237 IPPLEEEIELIEALAGTKPPAKVVGISLNTSGL 269 (301)
T ss_dssp ---HHHHHHHHHHCCCGC---EEEEEECC-TTS
T ss_pred CCCHHHHHHHHHHhhccCCCccEEEEEEECCCC
Confidence 23455555555543 23489999997665
No 473
>PRK07004 replicative DNA helicase; Provisional
Probab=92.13 E-value=0.21 Score=50.64 Aligned_cols=40 Identities=20% Similarity=0.410 Sum_probs=34.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~~ 214 (370)
-+.+.++.+|+|||+++.++|...| +.|++|+++-+....
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 3455569999999999999999887 469999999998854
No 474
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.07 E-value=0.2 Score=48.93 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=30.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH--HhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTL--AGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~L--A~~G~rVllID~D~ 212 (370)
.+.|.+|..|+|||.++.+||..+ ...+.+++++-.+.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH 41 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence 456666999999999999999999 67777777766553
No 475
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.02 E-value=0.23 Score=47.47 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=30.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh------CCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~------~G~rVllID~D~~ 213 (370)
.|....|..|+|||+++.++|...+. .+.+|+.||+.-.
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 44444499999999999999988763 2349999999853
No 476
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.00 E-value=0.15 Score=41.14 Aligned_cols=20 Identities=45% Similarity=0.439 Sum_probs=18.1
Q ss_pred EeCCCCChHHHHHHHHHHHH
Q 017486 179 SSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 179 ~S~kGGvGKTTla~nLA~~L 198 (370)
.+|..|+||||+|..|+..+
T Consensus 3 i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 3 ISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 34899999999999999988
No 477
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.99 E-value=0.27 Score=42.79 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=24.7
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEE
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVll 207 (370)
|.+| |+.|+||||+...+...|...|.+|.-
T Consensus 2 i~iT-G~pG~GKTTll~k~i~~l~~~~~~v~G 32 (168)
T PF03266_consen 2 IFIT-GPPGVGKTTLLKKVIEELKKKGLPVGG 32 (168)
T ss_dssp EEEE-S-TTSSHHHHHHHHHHHHHHTCGGEEE
T ss_pred EEEE-CcCCCCHHHHHHHHHHHhhccCCccce
Confidence 4455 999999999999999999877766643
No 478
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=91.97 E-value=2.2 Score=37.23 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=34.1
Q ss_pred CcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
.++.++|++...............+|.++++...+. .++..+. ..+..+.+. +.++ -+|.|+++..
T Consensus 49 ~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~pi-ilvgnK~Dl~ 118 (187)
T cd04129 49 VQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPV-ILVGLKKDLR 118 (187)
T ss_pred EEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEeeChhhh
Confidence 356777887422111111111234577776655433 3555554 345555432 4554 4899999863
No 479
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.96 E-value=0.15 Score=41.54 Aligned_cols=40 Identities=25% Similarity=0.168 Sum_probs=29.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-----CCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~-----G~rVllID~D~~~ 214 (370)
.+.+..|..|+|||+++.+++..+... ..+++.+++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 345555999999999999999999764 5677777776544
No 480
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=91.94 E-value=0.079 Score=47.09 Aligned_cols=33 Identities=36% Similarity=0.479 Sum_probs=23.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
|.++++| |--|+||||++.-+ .+.| +-+||+|-
T Consensus 1 M~iVGLT-GgiatGKStVs~~f----~~~G--~~vIDaD~ 33 (225)
T KOG3220|consen 1 MLIVGLT-GGIATGKSTVSQVF----KALG--IPVIDADV 33 (225)
T ss_pred CeEEEee-cccccChHHHHHHH----HHcC--CcEecHHH
Confidence 4578888 66789999997554 4444 56789985
No 481
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.92 E-value=0.15 Score=43.92 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+|+| ||++|+||||+|..||..+
T Consensus 2 ~ItI-sG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITI-SGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEe-ccCCCCChhHHHHHHHHHh
Confidence 4454 5999999999999998877
No 482
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=91.87 E-value=1.8 Score=41.99 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=40.6
Q ss_pred CCcEEEEcCCCCCC-------hHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHcC-----CCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTG-------DIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----KVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~-------~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~-----~~~~~gvV~N~v~~ 346 (370)
...++|+|+|.-.. -....+..+..++.+++|++.... +.++...+.+.+... +.+ .-+|+|+++.
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp-~IIV~NKiDL 283 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKP-RILVLNKIDL 283 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCC-eEEEEECccc
Confidence 34689999985321 011112223346888888876643 466777676666653 344 4489999995
Q ss_pred C
Q 017486 347 D 347 (370)
Q Consensus 347 ~ 347 (370)
.
T Consensus 284 ~ 284 (335)
T PRK12299 284 L 284 (335)
T ss_pred C
Confidence 3
No 483
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=91.73 E-value=0.18 Score=44.94 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSL 217 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl 217 (370)
.+++.++.|-+|+||||++..+...+. +...+.||.|.....+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFH 56 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGS
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhc
Confidence 347777779999999999998877665 6788999999865433
No 484
>PRK13973 thymidylate kinase; Provisional
Probab=91.69 E-value=0.34 Score=43.70 Aligned_cols=35 Identities=29% Similarity=0.247 Sum_probs=30.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+.|+|- |-.|+||||.+..|+..|...|++|....
T Consensus 4 ~~IviE-G~dGsGKtTq~~~l~~~l~~~g~~~~~~~ 38 (213)
T PRK13973 4 RFITFE-GGEGAGKSTQIRLLAERLRAAGYDVLVTR 38 (213)
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567775 88999999999999999999999997763
No 485
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=91.51 E-value=0.78 Score=43.53 Aligned_cols=31 Identities=35% Similarity=0.465 Sum_probs=23.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
-|+|. |-+.+||||++-++ -|.||..+..-.
T Consensus 74 ~vavI-G~PNvGKStLtN~m------ig~kv~~vS~K~ 104 (379)
T KOG1423|consen 74 YVAVI-GAPNVGKSTLTNQM------IGQKVSAVSRKV 104 (379)
T ss_pred EEEEE-cCCCcchhhhhhHh------hCCccccccccc
Confidence 57777 89999999998765 367776655443
No 486
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=91.47 E-value=0.25 Score=45.71 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=26.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
|.+|++| |.-|+||||++..|+.. .|.+ +||+|.-
T Consensus 1 M~iIGlT-GgIgSGKStVs~~L~~~---~G~~--viDaD~i 35 (244)
T PTZ00451 1 MILIGLT-GGIACGKSTVSRILREE---HHIE--VIDADLV 35 (244)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHH---cCCe--EEehHHH
Confidence 3589999 88899999998776542 2654 5899974
No 487
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=91.41 E-value=0.33 Score=48.39 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=48.1
Q ss_pred CCCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|+++.+.|+|||. ..+.. .....+..+|.+++|+.+..--....++.+..+...+.+.+-+++|+.+..
T Consensus 77 ~~~~~~~liDtPG-h~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 77 TDKRKFIVADTPG-HEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred cCCeEEEEEeCCC-HHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccc
Confidence 3567899999994 43321 222334567999999988765555566667777777777666899999864
No 488
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=91.39 E-value=0.3 Score=43.53 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=25.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
++|+++ |..|+||||++..|+..+ |..| +|+|--
T Consensus 2 ~~i~it-G~~gsGKst~~~~l~~~~---g~~~--i~~D~~ 35 (195)
T PRK14730 2 RRIGLT-GGIASGKSTVGNYLAQQK---GIPI--LDADIY 35 (195)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhh---CCeE--eeCcHH
Confidence 468888 999999999998877543 6544 588864
No 489
>PLN00043 elongation factor 1-alpha; Provisional
Probab=91.38 E-value=0.38 Score=48.61 Aligned_cols=69 Identities=16% Similarity=0.076 Sum_probs=50.5
Q ss_pred CCCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchH-------HHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
++.+-+.|||+|. ..+.. .....+..+|.+++|+.+..-.+ ..+++.+..+...+++.+-+++|+.+..
T Consensus 82 ~~~~~i~liDtPG-h~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 82 TTKYYCTVIDAPG-HRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred CCCEEEEEEECCC-HHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 4678899999994 44332 23333556799999998876433 3677778888888998777899999853
No 490
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.19 E-value=0.45 Score=42.58 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=32.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.++|+|+ |-.|+||||+..++...+.. +++|.++..|+.
T Consensus 22 ~~~i~~~-G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~~ 60 (207)
T TIGR00073 22 LVVLNFM-SSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDVI 60 (207)
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHHhc-CCeEEEEECCCC
Confidence 4677787 88899999999999887753 579999998874
No 491
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=91.12 E-value=0.29 Score=44.22 Aligned_cols=38 Identities=32% Similarity=0.388 Sum_probs=31.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+|+|+ |-.|+||||+|..|...|... ++.+|-.|-+-
T Consensus 9 iiIgIa-G~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YY 46 (218)
T COG0572 9 IIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYY 46 (218)
T ss_pred EEEEEe-CCCCCCHHHHHHHHHHHhCcC--cceEeeccccc
Confidence 477777 888999999999999988644 88888887654
No 492
>PRK03839 putative kinase; Provisional
Probab=91.11 E-value=0.25 Score=43.11 Aligned_cols=31 Identities=42% Similarity=0.535 Sum_probs=23.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.|.++ |-.|+||||++..||..+ |.. .+|+|
T Consensus 2 ~I~l~-G~pGsGKsT~~~~La~~~---~~~--~id~d 32 (180)
T PRK03839 2 IIAIT-GTPGVGKTTVSKLLAEKL---GYE--YVDLT 32 (180)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence 35555 899999999999998877 443 45555
No 493
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=91.04 E-value=0.45 Score=44.45 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCc--EEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR--VGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~r--VllID~D~~ 213 (370)
+-+|++. |-.|+||||+|..|+..+++.+.+ |-+|=+|-.
T Consensus 82 pfIIgia-GsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF 123 (283)
T COG1072 82 PFIIGIA-GSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF 123 (283)
T ss_pred CEEEEec-cCccccHHHHHHHHHHHHhhCCCCCceEEEecccc
Confidence 3477777 999999999999999999987655 888887753
No 494
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=90.97 E-value=2.9 Score=40.61 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=25.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~ 210 (370)
.|.|+ |..|+||||+...|...+... +.+++.++-
T Consensus 124 ~ili~-G~tGSGKTT~l~al~~~i~~~~~~~i~tiEd 159 (343)
T TIGR01420 124 LILVT-GPTGSGKSTTLASMIDYINKNAAGHIITIED 159 (343)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHhhCcCCCCEEEEEcC
Confidence 55555 999999999999988877643 456665543
No 495
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=90.96 E-value=0.24 Score=49.21 Aligned_cols=42 Identities=31% Similarity=0.332 Sum_probs=32.6
Q ss_pred ccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 167 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 167 ~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
..+....+=|.+. +.+|.||||+|..||..++.+|+=|=-++
T Consensus 257 eRL~eraeGILIA-G~PGaGKsTFaqAlAefy~~~GkiVKTmE 298 (604)
T COG1855 257 ERLEERAEGILIA-GAPGAGKSTFAQALAEFYASQGKIVKTME 298 (604)
T ss_pred HHHHhhhcceEEe-cCCCCChhHHHHHHHHHHHhcCcEEeecc
Confidence 3444445567777 99999999999999999999998444443
No 496
>PRK13975 thymidylate kinase; Provisional
Probab=90.92 E-value=0.28 Score=43.26 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHH
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA 199 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA 199 (370)
|++.|+|. |-.|+||||++..||..|.
T Consensus 1 m~~~I~ie-G~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 1 MNKFIVFE-GIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 34577777 9999999999999999884
No 497
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=90.90 E-value=0.32 Score=46.68 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=30.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC------CCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~------G~rVllID~D~ 212 (370)
.+....|..|+|||+++.++|...+.. +.+|+.||++-
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 444444999999999999999887642 35999999985
No 498
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=90.89 E-value=0.79 Score=39.37 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCC------hHHHHHhhH--hCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTG------DIQLTLCQV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~------~~~l~~~~~--~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
....+.+||+|.-.+ +...+...+ ...|.++.|+++.. ++.-..+..++.+.+.|.+ +++||++.
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~v-vvlN~~D~ 117 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVV-VVLNKMDE 117 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEE-EEEETHHH
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEE-EEEeCHHH
Confidence 457899999997321 222222222 35799999998876 4444567778888999976 99999985
No 499
>PLN02348 phosphoribulokinase
Probab=90.83 E-value=0.47 Score=46.78 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=32.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCC---------------CcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG---------------ARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G---------------~rVllID~D~~ 213 (370)
..+|+|+ |-.|+||||+|..|+..|...+ ..+.+|-+|-+
T Consensus 49 p~IIGIa-G~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY 103 (395)
T PLN02348 49 TVVIGLA-ADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY 103 (395)
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence 3577777 9999999999999999997542 46788888754
No 500
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=90.71 E-value=0.4 Score=49.20 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=34.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.++.|. +..|+|||+++.+++...++.|.+|++|..+..
T Consensus 274 ~~~li~-G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~ 312 (509)
T PRK09302 274 SIILVS-GATGTGKTLLASKFAEAACRRGERCLLFAFEES 312 (509)
T ss_pred cEEEEE-cCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 456664 899999999999999999999999999998753
Done!