Query 017486
Match_columns 370
No_of_seqs 418 out of 2473
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ph1_A Nucleotide-binding prot 100.0 6.8E-29 2.3E-33 230.5 20.0 201 167-369 12-219 (262)
2 3la6_A Tyrosine-protein kinase 100.0 2.8E-28 9.7E-33 229.3 16.3 173 172-350 91-270 (286)
3 3bfv_A CAPA1, CAPB2, membrane 100.0 5.9E-28 2E-32 225.5 14.0 173 172-351 81-261 (271)
4 3cio_A ETK, tyrosine-protein k 99.9 1.7E-27 5.7E-32 225.5 13.8 171 172-348 103-280 (299)
5 3ea0_A ATPase, para family; al 99.9 1.5E-26 5E-31 211.6 13.5 171 171-348 2-186 (245)
6 1g3q_A MIND ATPase, cell divis 99.9 4.6E-26 1.6E-30 207.4 16.5 170 172-348 1-177 (237)
7 3q9l_A Septum site-determining 99.9 1.9E-25 6.5E-30 206.0 14.7 168 172-347 1-186 (260)
8 1hyq_A MIND, cell division inh 99.9 2.6E-25 8.9E-30 205.8 13.5 169 172-348 1-176 (263)
9 3pg5_A Uncharacterized protein 99.9 1.4E-25 4.8E-30 217.8 11.6 174 173-348 1-256 (361)
10 3k9g_A PF-32 protein; ssgcid, 99.9 3.8E-25 1.3E-29 205.4 13.1 171 171-346 25-209 (267)
11 3fwy_A Light-independent proto 99.9 1.9E-24 6.5E-29 205.6 17.2 172 172-346 47-232 (314)
12 1wcv_1 SOJ, segregation protei 99.9 3.4E-25 1.2E-29 204.9 10.2 166 171-347 4-182 (257)
13 3kjh_A CO dehydrogenase/acetyl 99.9 1.8E-24 6.2E-29 197.8 12.4 167 175-346 2-195 (254)
14 3ug7_A Arsenical pump-driving 99.9 2.6E-24 8.7E-29 207.9 12.0 190 171-369 23-305 (349)
15 3end_A Light-independent proto 99.9 1.5E-23 5E-28 198.7 16.2 170 171-346 39-225 (307)
16 3zq6_A Putative arsenical pump 99.9 5.2E-25 1.8E-29 210.7 6.2 195 173-369 13-290 (324)
17 4dzz_A Plasmid partitioning pr 99.9 1.1E-23 3.9E-28 187.1 14.5 138 173-347 1-143 (206)
18 2oze_A ORF delta'; para, walke 99.9 4.4E-24 1.5E-28 201.3 12.2 174 171-348 32-226 (298)
19 1cp2_A CP2, nitrogenase iron p 99.9 5.7E-24 2E-28 197.4 11.1 170 173-346 1-186 (269)
20 2afh_E Nitrogenase iron protei 99.9 1E-23 3.5E-28 198.2 11.3 169 173-346 2-189 (289)
21 3ez2_A Plasmid partition prote 99.9 7E-24 2.4E-28 208.3 6.9 173 171-347 106-318 (398)
22 3ez9_A Para; DNA binding, wing 99.9 1.4E-23 4.9E-28 206.4 8.1 170 171-344 109-318 (403)
23 2woj_A ATPase GET3; tail-ancho 99.9 9.1E-24 3.1E-28 204.3 5.9 176 171-347 15-278 (354)
24 3fkq_A NTRC-like two-domain pr 99.9 9.6E-23 3.3E-27 198.6 10.2 166 171-345 141-323 (373)
25 3iqw_A Tail-anchored protein t 99.9 4.1E-22 1.4E-26 191.0 11.7 169 170-346 12-263 (334)
26 2woo_A ATPase GET3; tail-ancho 99.9 1.8E-22 6.3E-27 193.4 9.0 173 172-346 17-262 (329)
27 2xj4_A MIPZ; replication, cell 99.9 3.9E-23 1.3E-27 194.2 1.9 164 172-348 3-192 (286)
28 3cwq_A Para family chromosome 99.8 1.9E-21 6.4E-26 174.5 10.4 132 174-348 1-134 (209)
29 3io3_A DEHA2D07832P; chaperone 99.8 3E-22 1E-26 193.0 4.9 174 170-348 14-274 (348)
30 1byi_A Dethiobiotin synthase; 99.8 5.6E-19 1.9E-23 159.1 12.9 168 174-347 2-180 (224)
31 3igf_A ALL4481 protein; two-do 99.7 1.1E-17 3.6E-22 162.3 13.8 159 174-343 2-252 (374)
32 1ihu_A Arsenical pump-driving 99.7 2.4E-18 8.1E-23 177.1 9.3 165 174-347 8-240 (589)
33 1ihu_A Arsenical pump-driving 99.7 3.2E-18 1.1E-22 176.2 7.8 174 171-348 324-533 (589)
34 2xxa_A Signal recognition part 99.7 2.5E-19 8.6E-24 177.2 -2.2 225 73-348 20-254 (433)
35 1uwd_A Hypothetical protein TM 99.7 4.8E-17 1.6E-21 129.3 10.3 86 74-160 5-90 (103)
36 3lno_A Putative uncharacterize 99.7 1.5E-17 5.1E-22 133.2 7.1 87 73-160 6-93 (108)
37 3cq1_A Putative uncharacterize 99.7 8E-17 2.7E-21 128.0 9.6 84 75-160 6-89 (103)
38 1j8m_F SRP54, signal recogniti 99.6 2.8E-15 9.5E-20 141.3 9.5 225 73-348 18-253 (297)
39 2ffh_A Protein (FFH); SRP54, s 99.6 6.4E-17 2.2E-21 159.2 -2.2 223 73-348 20-251 (425)
40 1zu4_A FTSY; GTPase, signal re 99.6 1.6E-14 5.3E-19 137.6 12.4 153 172-348 104-268 (320)
41 3dm5_A SRP54, signal recogniti 99.5 1.1E-15 3.9E-20 150.6 0.8 224 73-348 21-253 (443)
42 1ls1_A Signal recognition part 99.5 2.3E-14 8E-19 134.9 9.4 149 172-348 97-251 (295)
43 2j37_W Signal recognition part 99.5 1.9E-15 6.3E-20 151.8 0.4 225 73-348 21-254 (504)
44 3kl4_A SRP54, signal recogniti 99.4 4.3E-15 1.5E-19 146.4 -1.9 225 73-348 17-252 (433)
45 2v3c_C SRP54, signal recogniti 99.4 1.4E-12 4.7E-17 128.9 14.5 146 173-348 99-252 (432)
46 1yrb_A ATP(GTP)binding protein 99.4 2.1E-13 7.3E-18 125.2 6.6 46 172-218 12-57 (262)
47 3of5_A Dethiobiotin synthetase 99.4 2.2E-12 7.4E-17 116.9 10.9 166 172-347 3-182 (228)
48 3qxc_A Dethiobiotin synthetase 99.3 2.3E-11 7.7E-16 111.1 13.9 179 164-348 12-203 (242)
49 1vma_A Cell division protein F 99.3 1.6E-11 5.5E-16 116.0 11.7 149 172-348 103-263 (306)
50 3ux2_A MIP18 family protein FA 99.2 1.8E-12 6.1E-17 105.3 2.4 77 75-151 8-90 (130)
51 3fgn_A Dethiobiotin synthetase 99.2 6.1E-11 2.1E-15 108.8 11.2 167 170-346 23-198 (251)
52 2px0_A Flagellar biosynthesis 99.1 1.7E-10 5.6E-15 108.6 10.2 142 173-348 105-253 (296)
53 3p32_A Probable GTPase RV1496/ 99.1 2E-10 6.9E-15 110.7 8.9 152 172-347 78-230 (355)
54 2p67_A LAO/AO transport system 98.7 3.4E-08 1.2E-12 94.6 10.1 152 172-347 55-207 (341)
55 3e70_C DPA, signal recognition 98.7 6.7E-09 2.3E-13 98.9 2.5 230 72-348 44-282 (328)
56 2r8r_A Sensor protein; KDPD, P 98.6 8.9E-08 3.1E-12 85.9 6.9 44 173-216 5-48 (228)
57 2yhs_A FTSY, cell division pro 98.3 2E-06 6.9E-11 85.6 10.7 149 172-348 292-452 (503)
58 3pzx_A Formate--tetrahydrofola 98.3 4.5E-07 1.5E-11 88.7 4.9 51 172-225 56-109 (557)
59 1rj9_A FTSY, signal recognitio 98.0 6E-05 2E-09 70.7 11.9 43 172-215 101-143 (304)
60 2www_A Methylmalonic aciduria 97.8 0.0003 1E-08 67.2 15.0 150 173-346 74-224 (349)
61 2og2_A Putative signal recogni 97.7 0.00011 3.9E-09 70.4 10.0 41 173-214 157-197 (359)
62 2obn_A Hypothetical protein; s 97.7 0.00079 2.7E-08 64.0 14.8 141 173-347 152-312 (349)
63 4a0g_A Adenosylmethionine-8-am 97.7 0.00024 8.2E-09 75.5 12.4 66 280-346 201-272 (831)
64 3b9q_A Chloroplast SRP recepto 97.6 0.00022 7.7E-09 66.7 9.5 41 173-214 100-140 (302)
65 2h5e_A Peptide chain release f 97.6 0.00018 6.3E-09 72.5 9.0 69 279-348 80-148 (529)
66 2rdo_7 EF-G, elongation factor 97.5 0.00038 1.3E-08 72.7 10.6 68 279-347 80-147 (704)
67 1u94_A RECA protein, recombina 97.4 0.00025 8.4E-09 68.0 6.8 39 173-212 63-101 (356)
68 1g5t_A COB(I)alamin adenosyltr 97.3 0.00075 2.6E-08 59.0 9.1 37 174-212 30-66 (196)
69 2c78_A Elongation factor TU-A; 97.2 0.0023 7.8E-08 62.2 11.8 68 279-347 73-141 (405)
70 1xp8_A RECA protein, recombina 97.2 0.00087 3E-08 64.4 8.4 38 174-212 75-112 (366)
71 2qm8_A GTPase/ATPase; G protei 97.2 0.0038 1.3E-07 59.2 12.6 42 172-214 54-95 (337)
72 3iev_A GTP-binding protein ERA 97.1 0.003 1E-07 59.0 11.5 67 280-347 58-135 (308)
73 1xjc_A MOBB protein homolog; s 97.0 0.00093 3.2E-08 57.0 6.1 42 172-214 3-44 (169)
74 2elf_A Protein translation elo 97.0 0.0039 1.3E-07 59.9 10.8 66 279-346 58-125 (370)
75 1wf3_A GTP-binding protein; GT 97.0 0.0047 1.6E-07 57.6 11.0 68 279-347 53-130 (301)
76 2xex_A Elongation factor G; GT 96.9 0.0036 1.2E-07 65.1 10.8 68 279-347 73-140 (693)
77 2zr9_A Protein RECA, recombina 96.9 0.0016 5.6E-08 62.1 7.4 39 173-212 61-99 (349)
78 3tr5_A RF-3, peptide chain rel 96.9 0.00031 1.1E-08 70.9 2.4 69 278-347 79-147 (528)
79 3t1o_A Gliding protein MGLA; G 96.9 0.012 4.2E-07 49.7 12.3 68 279-347 72-148 (198)
80 3con_A GTPase NRAS; structural 96.9 0.0085 2.9E-07 50.8 11.1 68 279-347 67-139 (190)
81 1d2e_A Elongation factor TU (E 96.9 0.0036 1.2E-07 60.7 9.6 68 279-347 64-132 (397)
82 1dar_A EF-G, elongation factor 96.9 0.0044 1.5E-07 64.5 10.8 69 279-348 75-143 (691)
83 2ce2_X GTPase HRAS; signaling 96.8 0.011 3.7E-07 48.3 11.1 68 279-347 49-121 (166)
84 2gf9_A RAS-related protein RAB 96.8 0.0056 1.9E-07 52.1 9.5 68 279-347 69-140 (189)
85 3vqt_A RF-3, peptide chain rel 96.8 0.0058 2E-07 61.8 11.0 68 278-347 97-165 (548)
86 2b8t_A Thymidine kinase; deoxy 96.8 0.0058 2E-07 54.5 9.8 35 175-209 13-47 (223)
87 1z2a_A RAS-related protein RAB 96.8 0.0051 1.8E-07 50.7 8.8 67 280-347 53-122 (168)
88 2g0t_A Conserved hypothetical 96.8 0.0091 3.1E-07 56.7 11.4 137 173-343 169-323 (350)
89 2yvu_A Probable adenylyl-sulfa 96.7 0.0018 6E-08 55.5 5.3 40 173-213 13-52 (186)
90 2dyk_A GTP-binding protein; GT 96.7 0.011 3.7E-07 48.4 9.9 67 280-347 48-121 (161)
91 2lkc_A Translation initiation 96.7 0.0053 1.8E-07 51.3 8.1 68 280-348 54-121 (178)
92 1zd9_A ADP-ribosylation factor 96.6 0.029 9.8E-07 47.6 12.6 68 279-347 65-137 (188)
93 2gco_A H9, RHO-related GTP-bin 96.6 0.01 3.4E-07 51.2 9.6 68 280-348 72-143 (201)
94 3dz8_A RAS-related protein RAB 96.6 0.0062 2.1E-07 51.9 8.2 68 279-347 70-141 (191)
95 2efe_B Small GTP-binding prote 96.6 0.014 4.9E-07 48.7 10.4 67 280-347 60-130 (181)
96 4bas_A ADP-ribosylation factor 96.5 0.018 6.3E-07 48.9 10.8 69 279-348 61-141 (199)
97 3hr8_A Protein RECA; alpha and 96.5 0.0044 1.5E-07 59.2 7.3 40 173-213 61-100 (356)
98 3pqc_A Probable GTP-binding pr 96.5 0.013 4.3E-07 49.7 9.7 42 305-347 105-146 (195)
99 1r8s_A ADP-ribosylation factor 96.5 0.093 3.2E-06 42.8 14.8 69 279-348 42-115 (164)
100 3iby_A Ferrous iron transport 96.5 0.01 3.6E-07 53.8 9.5 65 279-346 46-122 (256)
101 2h57_A ADP-ribosylation factor 96.5 0.012 4.1E-07 50.0 9.4 69 279-348 65-140 (190)
102 3bc1_A RAS-related protein RAB 96.5 0.033 1.1E-06 46.8 12.1 67 280-347 69-140 (195)
103 1z0f_A RAB14, member RAS oncog 96.5 0.021 7.2E-07 47.4 10.7 68 279-347 62-133 (179)
104 1kao_A RAP2A; GTP-binding prot 96.4 0.037 1.3E-06 45.1 11.8 67 280-347 50-121 (167)
105 1z08_A RAS-related protein RAB 96.4 0.019 6.6E-07 47.3 10.0 68 279-347 53-124 (170)
106 1u8z_A RAS-related protein RAL 96.4 0.014 4.7E-07 47.9 9.0 68 279-347 50-122 (168)
107 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0032 1.1E-07 57.2 5.5 40 173-213 4-43 (260)
108 4dcu_A GTP-binding protein ENG 96.4 0.0043 1.5E-07 61.2 6.7 69 278-347 68-144 (456)
109 3oes_A GTPase rhebl1; small GT 96.4 0.023 7.8E-07 48.8 10.7 68 279-347 70-142 (201)
110 2fg5_A RAB-22B, RAS-related pr 96.4 0.02 6.8E-07 48.8 10.1 68 279-347 70-141 (192)
111 1ky3_A GTP-binding protein YPT 96.3 0.036 1.2E-06 46.1 11.2 67 279-346 56-130 (182)
112 2erx_A GTP-binding protein DI- 96.3 0.014 4.9E-07 48.1 8.6 68 279-347 49-122 (172)
113 2a9k_A RAS-related protein RAL 96.3 0.019 6.5E-07 48.1 9.4 67 280-347 65-136 (187)
114 3clv_A RAB5 protein, putative; 96.3 0.053 1.8E-06 45.8 12.4 64 281-345 93-158 (208)
115 2nzj_A GTP-binding protein REM 96.3 0.024 8.3E-07 46.9 9.8 68 280-348 51-125 (175)
116 1g16_A RAS-related protein SEC 96.3 0.014 4.7E-07 48.1 8.2 66 280-346 51-120 (170)
117 1zbd_A Rabphilin-3A; G protein 96.2 0.029 1E-06 48.0 10.4 67 280-347 56-126 (203)
118 1xx6_A Thymidine kinase; NESG, 96.2 0.027 9.4E-07 48.8 10.1 36 173-209 8-43 (191)
119 3j2k_7 ERF3, eukaryotic polype 96.2 0.024 8.4E-07 55.5 10.8 67 279-346 93-167 (439)
120 2bov_A RAla, RAS-related prote 96.2 0.035 1.2E-06 47.4 10.6 67 280-347 61-132 (206)
121 3tkl_A RAS-related protein RAB 96.1 0.019 6.5E-07 48.7 8.6 67 280-347 64-134 (196)
122 1m2o_B GTP-binding protein SAR 96.1 0.046 1.6E-06 46.5 11.0 67 280-347 66-137 (190)
123 1nks_A Adenylate kinase; therm 96.1 0.0044 1.5E-07 52.7 4.4 37 174-211 2-38 (194)
124 2fv8_A H6, RHO-related GTP-bin 96.1 0.022 7.4E-07 49.2 8.8 67 280-347 72-142 (207)
125 1jny_A EF-1-alpha, elongation 96.1 0.028 9.6E-07 55.0 10.4 70 278-348 81-158 (435)
126 2hjg_A GTP-binding protein ENG 96.0 0.013 4.4E-07 57.4 7.8 69 278-347 48-124 (436)
127 1np6_A Molybdopterin-guanine d 96.0 0.0095 3.3E-07 50.9 6.0 42 172-214 5-46 (174)
128 2dr3_A UPF0273 protein PH0284; 96.0 0.0075 2.5E-07 53.5 5.6 39 174-213 24-62 (247)
129 2bcg_Y Protein YP2, GTP-bindin 96.0 0.036 1.2E-06 47.6 9.7 68 280-348 56-127 (206)
130 1ega_A Protein (GTP-binding pr 96.0 0.022 7.4E-07 52.9 8.8 42 304-347 88-129 (301)
131 2b6h_A ADP-ribosylation factor 96.0 0.079 2.7E-06 45.1 11.7 69 279-348 71-144 (192)
132 3p26_A Elongation factor 1 alp 96.0 0.025 8.6E-07 56.1 9.6 68 279-347 109-184 (483)
133 2atv_A RERG, RAS-like estrogen 95.9 0.059 2E-06 45.9 10.8 67 279-347 74-145 (196)
134 2gf0_A GTP-binding protein DI- 95.9 0.031 1.1E-06 47.5 9.0 68 279-347 54-127 (199)
135 3t5g_A GTP-binding protein RHE 95.9 0.024 8.1E-07 47.5 8.1 67 280-347 53-124 (181)
136 1c1y_A RAS-related protein RAP 95.9 0.047 1.6E-06 44.6 9.8 68 279-347 49-121 (167)
137 1rz3_A Hypothetical protein rb 95.9 0.0096 3.3E-07 51.7 5.7 41 173-214 22-62 (201)
138 4fn5_A EF-G 1, elongation fact 95.9 0.064 2.2E-06 55.9 12.8 68 279-347 83-150 (709)
139 1zj6_A ADP-ribosylation factor 95.9 0.12 4.2E-06 43.4 12.6 67 280-347 59-130 (187)
140 2p5s_A RAS and EF-hand domain 95.9 0.038 1.3E-06 47.3 9.4 67 280-347 76-146 (199)
141 2wsm_A Hydrogenase expression/ 95.9 0.0089 3E-07 52.2 5.3 39 173-213 30-68 (221)
142 1z0j_A RAB-22, RAS-related pro 95.8 0.067 2.3E-06 43.8 10.4 68 280-347 54-124 (170)
143 1f6b_A SAR1; gtpases, N-termin 95.8 0.042 1.4E-06 47.2 9.4 67 280-347 68-139 (198)
144 3j25_A Tetracycline resistance 95.8 0.0098 3.3E-07 61.3 6.1 69 278-347 64-132 (638)
145 1z06_A RAS-related protein RAB 95.8 0.078 2.7E-06 44.7 11.0 66 280-347 68-140 (189)
146 3i8s_A Ferrous iron transport 95.8 0.058 2E-06 49.2 10.7 65 279-346 48-124 (274)
147 1upt_A ARL1, ADP-ribosylation 95.8 0.081 2.8E-06 43.4 10.8 68 280-348 50-122 (171)
148 1fzq_A ADP-ribosylation factor 95.8 0.095 3.3E-06 44.1 11.4 69 279-348 58-131 (181)
149 2a5j_A RAS-related protein RAB 95.8 0.031 1.1E-06 47.4 8.2 67 280-347 69-139 (191)
150 1ek0_A Protein (GTP-binding pr 95.7 0.072 2.4E-06 43.6 10.2 67 280-347 51-121 (170)
151 2j69_A Bacterial dynamin-like 95.7 0.042 1.4E-06 57.1 10.5 65 281-347 174-243 (695)
152 3kkq_A RAS-related protein M-R 95.7 0.048 1.7E-06 45.6 9.2 67 280-347 65-136 (183)
153 2ywe_A GTP-binding protein LEP 95.7 0.047 1.6E-06 55.7 10.5 67 279-347 71-138 (600)
154 3cph_A RAS-related protein SEC 95.7 0.03 1E-06 48.2 7.9 66 280-346 68-137 (213)
155 2il1_A RAB12; G-protein, GDP, 95.7 0.034 1.1E-06 47.4 8.1 67 280-347 74-144 (192)
156 1mky_A Probable GTP-binding pr 95.7 0.055 1.9E-06 52.9 10.6 67 279-346 47-122 (439)
157 2xtp_A GTPase IMAP family memb 95.6 0.018 6.2E-07 51.8 6.6 68 279-347 69-152 (260)
158 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.013 4.4E-07 51.2 5.4 40 173-213 23-62 (235)
159 1a7j_A Phosphoribulokinase; tr 95.6 0.0056 1.9E-07 56.7 3.1 41 173-214 5-45 (290)
160 1nrj_B SR-beta, signal recogni 95.6 0.04 1.4E-06 47.7 8.6 67 280-348 54-134 (218)
161 4dsu_A GTPase KRAS, isoform 2B 95.6 0.094 3.2E-06 43.8 10.6 67 280-347 51-122 (189)
162 2dy1_A Elongation factor G; tr 95.6 0.032 1.1E-06 57.7 8.8 67 279-347 72-139 (665)
163 3io5_A Recombination and repai 95.6 0.019 6.4E-07 53.9 6.4 38 175-213 30-69 (333)
164 2cvh_A DNA repair and recombin 95.5 0.012 4.1E-07 51.2 4.8 35 174-212 21-55 (220)
165 1vco_A CTP synthetase; tetrame 95.5 0.043 1.5E-06 55.2 9.3 43 172-214 11-54 (550)
166 3bh0_A DNAB-like replicative h 95.5 0.015 5.2E-07 54.4 5.7 39 174-213 69-107 (315)
167 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.089 3.1E-06 43.5 10.1 67 280-347 55-129 (177)
168 1uj2_A Uridine-cytidine kinase 95.5 0.0098 3.3E-07 53.6 4.2 41 173-214 22-67 (252)
169 1x3s_A RAS-related protein RAB 95.5 0.032 1.1E-06 47.2 7.3 68 279-347 62-134 (195)
170 2pez_A Bifunctional 3'-phospho 95.5 0.015 5.2E-07 49.2 5.1 41 173-214 5-45 (179)
171 1vg8_A RAS-related protein RAB 95.5 0.037 1.3E-06 47.3 7.7 68 279-347 55-130 (207)
172 2qu8_A Putative nucleolar GTP- 95.5 0.09 3.1E-06 46.1 10.4 68 279-347 74-155 (228)
173 2h17_A ADP-ribosylation factor 95.5 0.09 3.1E-06 44.0 10.0 68 279-347 63-135 (181)
174 1r2q_A RAS-related protein RAB 95.5 0.054 1.9E-06 44.3 8.4 69 279-347 53-124 (170)
175 1svi_A GTP-binding protein YSX 95.4 0.067 2.3E-06 45.2 9.0 42 306-348 107-148 (195)
176 2bme_A RAB4A, RAS-related prot 95.4 0.096 3.3E-06 43.8 9.8 67 280-347 58-128 (186)
177 2ged_A SR-beta, signal recogni 95.3 0.04 1.4E-06 46.6 7.3 67 280-347 90-169 (193)
178 3uie_A Adenylyl-sulfate kinase 95.3 0.019 6.5E-07 49.6 5.3 42 172-214 24-65 (200)
179 2fn4_A P23, RAS-related protei 95.3 0.099 3.4E-06 43.2 9.6 67 280-347 56-127 (181)
180 3lxw_A GTPase IMAP family memb 95.3 0.072 2.5E-06 47.8 9.3 67 279-347 68-152 (247)
181 3lxx_A GTPase IMAP family memb 95.3 0.075 2.6E-06 47.1 9.3 21 174-195 30-50 (239)
182 3cpj_B GTP-binding protein YPT 95.3 0.075 2.6E-06 46.4 9.1 67 280-347 61-131 (223)
183 1s1m_A CTP synthase; CTP synth 95.3 0.018 6.1E-07 57.9 5.5 43 173-215 3-46 (545)
184 3tw8_B RAS-related protein RAB 95.2 0.035 1.2E-06 46.1 6.6 67 280-347 57-126 (181)
185 3bgw_A DNAB-like replicative h 95.2 0.019 6.3E-07 56.5 5.5 40 174-214 198-237 (444)
186 4a1f_A DNAB helicase, replicat 95.2 0.019 6.5E-07 54.4 5.3 39 174-213 47-85 (338)
187 3c5c_A RAS-like protein 12; GD 95.2 0.097 3.3E-06 44.3 9.4 67 279-347 67-140 (187)
188 2y8e_A RAB-protein 6, GH09086P 95.2 0.051 1.7E-06 45.0 7.5 67 280-347 62-132 (179)
189 1m7g_A Adenylylsulfate kinase; 95.2 0.017 5.7E-07 50.5 4.5 41 172-213 24-65 (211)
190 3q85_A GTP-binding protein REM 95.2 0.058 2E-06 44.3 7.7 68 279-347 49-122 (169)
191 2w58_A DNAI, primosome compone 95.1 0.023 7.7E-07 49.0 5.2 37 174-211 55-91 (202)
192 3o47_A ADP-ribosylation factor 95.1 0.21 7.1E-06 46.8 12.3 68 279-347 207-279 (329)
193 2ew1_A RAS-related protein RAB 95.1 0.11 3.7E-06 44.8 9.6 67 280-347 74-144 (201)
194 1mh1_A RAC1; GTP-binding, GTPa 95.1 0.042 1.4E-06 45.9 6.6 68 279-347 51-122 (186)
195 1m7b_A RND3/RHOE small GTP-bin 95.0 0.057 1.9E-06 45.5 7.4 68 279-347 53-124 (184)
196 3k53_A Ferrous iron transport 95.0 0.11 3.7E-06 47.1 9.7 65 279-346 48-121 (271)
197 3t34_A Dynamin-related protein 95.0 0.4 1.4E-05 45.3 14.1 67 280-347 135-216 (360)
198 3q3j_B RHO-related GTP-binding 95.0 0.053 1.8E-06 47.2 7.2 68 279-347 73-144 (214)
199 3avx_A Elongation factor TS, e 95.0 0.048 1.7E-06 59.5 8.1 68 279-347 357-425 (1289)
200 2hf9_A Probable hydrogenase ni 95.0 0.022 7.6E-07 49.8 4.7 39 173-213 38-76 (226)
201 3a1s_A Iron(II) transport prot 94.9 0.086 2.9E-06 47.7 8.7 65 279-346 50-122 (258)
202 3lvq_E ARF-GAP with SH3 domain 94.9 0.19 6.4E-06 49.8 12.0 68 279-347 364-436 (497)
203 2f1r_A Molybdopterin-guanine d 94.9 0.02 7E-07 48.6 4.2 41 172-213 1-41 (171)
204 3ec2_A DNA replication protein 94.9 0.018 6E-07 48.8 3.7 36 174-210 39-75 (180)
205 2pbr_A DTMP kinase, thymidylat 94.9 0.034 1.2E-06 47.1 5.6 34 175-209 2-35 (195)
206 1zo1_I IF2, translation initia 94.8 0.028 9.5E-07 56.1 5.5 68 279-347 49-116 (501)
207 4dkx_A RAS-related protein RAB 94.8 0.22 7.5E-06 43.7 10.8 87 279-370 60-150 (216)
208 3izy_P Translation initiation 94.8 0.029 9.9E-07 56.5 5.6 67 280-347 51-117 (537)
209 2x77_A ADP-ribosylation factor 94.8 0.052 1.8E-06 45.8 6.5 69 279-348 64-137 (189)
210 2o52_A RAS-related protein RAB 94.8 0.044 1.5E-06 47.0 6.0 67 280-347 73-143 (200)
211 1cr0_A DNA primase/helicase; R 94.7 0.038 1.3E-06 50.8 5.9 39 173-212 35-74 (296)
212 1wb1_A Translation elongation 94.7 0.068 2.3E-06 53.0 8.1 67 279-347 71-138 (482)
213 1kht_A Adenylate kinase; phosp 94.7 0.019 6.6E-07 48.6 3.5 37 174-211 4-40 (192)
214 1ksh_A ARF-like protein 2; sma 94.6 0.19 6.5E-06 42.0 9.7 68 280-348 61-133 (186)
215 4gzl_A RAS-related C3 botulinu 94.6 0.075 2.6E-06 45.7 7.2 68 279-347 76-147 (204)
216 3t61_A Gluconokinase; PSI-biol 94.6 0.019 6.4E-07 49.6 3.3 38 169-212 14-51 (202)
217 1kk1_A EIF2gamma; initiation o 94.6 0.1 3.6E-06 50.4 8.9 67 281-348 83-151 (410)
218 2gks_A Bifunctional SAT/APS ki 94.6 0.029 9.9E-07 56.6 5.0 40 172-212 371-410 (546)
219 2z0h_A DTMP kinase, thymidylat 94.6 0.044 1.5E-06 46.6 5.6 35 175-210 2-36 (197)
220 3cmw_A Protein RECA, recombina 94.6 0.047 1.6E-06 61.8 7.1 41 173-214 383-423 (1706)
221 1gwn_A RHO-related GTP-binding 94.5 0.082 2.8E-06 45.7 7.2 68 279-347 74-145 (205)
222 3bos_A Putative DNA replicatio 94.5 0.045 1.5E-06 47.9 5.6 38 174-212 53-90 (242)
223 2r6a_A DNAB helicase, replicat 94.5 0.046 1.6E-06 53.7 6.1 39 174-213 204-243 (454)
224 2zts_A Putative uncharacterize 94.5 0.04 1.4E-06 48.7 5.2 38 176-213 32-70 (251)
225 2wji_A Ferrous iron transport 94.5 0.62 2.1E-05 38.2 12.3 64 280-346 49-120 (165)
226 2kjq_A DNAA-related protein; s 94.4 0.041 1.4E-06 45.5 4.7 38 173-211 36-73 (149)
227 3b1v_A Ferrous iron uptake tra 94.3 0.37 1.3E-05 43.9 11.5 64 280-346 48-119 (272)
228 1nn5_A Similar to deoxythymidy 94.3 0.054 1.9E-06 46.8 5.6 36 173-209 9-44 (215)
229 3cmw_A Protein RECA, recombina 94.2 0.059 2E-06 61.0 6.9 41 173-214 732-772 (1706)
230 2wjg_A FEOB, ferrous iron tran 94.2 0.83 2.8E-05 37.9 12.8 65 279-346 52-124 (188)
231 2orw_A Thymidine kinase; TMTK, 94.1 0.046 1.6E-06 46.9 4.7 35 174-209 4-38 (184)
232 1q57_A DNA primase/helicase; d 94.1 0.035 1.2E-06 55.3 4.4 39 174-213 243-282 (503)
233 2q6t_A DNAB replication FORK h 94.1 0.051 1.7E-06 53.3 5.5 39 174-213 201-240 (444)
234 3trf_A Shikimate kinase, SK; a 94.1 0.025 8.7E-07 47.8 2.9 35 172-212 4-38 (185)
235 3cmu_A Protein RECA, recombina 94.1 0.068 2.3E-06 61.4 7.1 41 173-214 383-423 (2050)
236 1qhx_A CPT, protein (chloramph 94.1 0.029 9.9E-07 47.1 3.3 34 174-211 4-37 (178)
237 2g3y_A GTP-binding protein GEM 94.1 0.48 1.6E-05 41.3 11.2 66 280-347 86-158 (211)
238 2wwf_A Thymidilate kinase, put 94.0 0.065 2.2E-06 46.2 5.5 36 173-209 10-45 (212)
239 1ly1_A Polynucleotide kinase; 94.0 0.047 1.6E-06 45.7 4.4 35 173-212 2-36 (181)
240 3mca_A HBS1, elongation factor 93.9 0.011 3.7E-07 60.4 0.2 68 279-347 253-328 (592)
241 3c8u_A Fructokinase; YP_612366 93.8 0.085 2.9E-06 45.8 5.8 39 173-212 22-60 (208)
242 2z43_A DNA repair and recombin 93.7 0.045 1.6E-06 51.2 4.1 40 173-213 107-152 (324)
243 2fh5_B SR-beta, signal recogni 93.6 0.49 1.7E-05 40.5 10.4 67 280-348 53-129 (214)
244 1x6v_B Bifunctional 3'-phospho 93.6 0.063 2.1E-06 55.0 5.2 43 172-215 51-93 (630)
245 3ihw_A Centg3; RAS, centaurin, 93.6 0.93 3.2E-05 38.0 12.0 61 280-346 66-131 (184)
246 4dcu_A GTP-binding protein ENG 93.6 0.15 5.1E-06 50.1 7.7 68 280-348 242-320 (456)
247 2r2a_A Uncharacterized protein 93.5 0.054 1.9E-06 47.2 4.0 39 172-211 4-48 (199)
248 2axn_A 6-phosphofructo-2-kinas 93.5 0.068 2.3E-06 53.6 5.2 40 172-212 34-73 (520)
249 1e6c_A Shikimate kinase; phosp 93.5 0.047 1.6E-06 45.5 3.4 34 172-211 1-34 (173)
250 1sq5_A Pantothenate kinase; P- 93.5 0.073 2.5E-06 49.4 5.0 40 173-213 80-121 (308)
251 3do6_A Formate--tetrahydrofola 93.4 0.11 3.7E-06 50.9 6.1 50 172-224 42-94 (543)
252 3jvv_A Twitching mobility prot 93.4 0.91 3.1E-05 43.0 12.7 35 174-209 124-159 (356)
253 3dpu_A RAB family protein; roc 93.4 0.2 6.8E-06 50.2 8.5 66 279-347 96-163 (535)
254 1v5w_A DMC1, meiotic recombina 93.3 0.075 2.6E-06 50.2 5.0 40 173-213 122-167 (343)
255 2qgz_A Helicase loader, putati 93.3 0.088 3E-06 48.9 5.3 38 173-211 152-190 (308)
256 1m8p_A Sulfate adenylyltransfe 93.3 0.064 2.2E-06 54.4 4.7 40 172-212 395-435 (573)
257 1jbk_A CLPB protein; beta barr 93.3 0.1 3.5E-06 43.4 5.4 36 174-210 44-86 (195)
258 2plr_A DTMP kinase, probable t 93.2 0.095 3.2E-06 45.0 5.1 34 174-209 5-38 (213)
259 1nlf_A Regulatory protein REPA 93.2 0.096 3.3E-06 47.7 5.4 39 173-212 30-78 (279)
260 2rhm_A Putative kinase; P-loop 93.2 0.082 2.8E-06 44.8 4.5 24 174-198 6-29 (193)
261 3tqc_A Pantothenate kinase; bi 93.2 0.098 3.3E-06 49.1 5.4 40 173-213 92-133 (321)
262 1lnz_A SPO0B-associated GTP-bi 93.2 0.17 5.9E-06 47.8 7.2 66 281-347 206-287 (342)
263 2e87_A Hypothetical protein PH 93.1 1.1 3.7E-05 42.2 12.7 67 280-347 213-293 (357)
264 1n0w_A DNA repair protein RAD5 93.1 0.078 2.7E-06 46.6 4.4 38 174-212 25-68 (243)
265 2v54_A DTMP kinase, thymidylat 93.0 0.069 2.3E-06 45.7 3.8 35 173-210 4-38 (204)
266 2ze6_A Isopentenyl transferase 92.9 0.084 2.9E-06 47.6 4.3 33 174-212 2-34 (253)
267 3d3q_A TRNA delta(2)-isopenten 92.9 0.091 3.1E-06 49.7 4.7 34 174-213 8-41 (340)
268 1qf9_A UMP/CMP kinase, protein 92.9 0.083 2.8E-06 44.6 4.1 34 172-211 5-38 (194)
269 1g8f_A Sulfate adenylyltransfe 92.7 0.095 3.3E-06 52.3 4.9 40 172-212 394-435 (511)
270 1knq_A Gluconate kinase; ALFA/ 92.7 0.11 3.9E-06 43.3 4.7 34 173-212 8-41 (175)
271 2iyv_A Shikimate kinase, SK; t 92.7 0.063 2.2E-06 45.3 3.1 34 173-212 2-35 (184)
272 3crm_A TRNA delta(2)-isopenten 92.6 0.082 2.8E-06 49.6 4.0 36 172-213 4-39 (323)
273 4hlc_A DTMP kinase, thymidylat 92.6 0.12 4.2E-06 45.0 4.9 36 172-209 1-36 (205)
274 2ewv_A Twitching motility prot 92.6 1.3 4.4E-05 42.2 12.5 37 173-210 136-173 (372)
275 1gtv_A TMK, thymidylate kinase 92.6 0.038 1.3E-06 47.8 1.6 35 175-210 2-36 (214)
276 3asz_A Uridine kinase; cytidin 92.5 0.12 3.9E-06 44.7 4.6 38 173-214 6-43 (211)
277 1via_A Shikimate kinase; struc 92.5 0.071 2.4E-06 44.7 3.1 34 173-212 4-37 (175)
278 1odf_A YGR205W, hypothetical 3 92.5 0.082 2.8E-06 48.8 3.7 40 173-213 31-73 (290)
279 3kb2_A SPBC2 prophage-derived 92.4 0.092 3.1E-06 43.4 3.7 33 174-212 2-34 (173)
280 2if2_A Dephospho-COA kinase; a 92.4 0.073 2.5E-06 45.7 3.2 32 174-212 2-33 (204)
281 2p65_A Hypothetical protein PF 92.4 0.12 4E-06 43.1 4.4 26 174-200 44-69 (187)
282 2cdn_A Adenylate kinase; phosp 92.3 0.14 4.6E-06 44.0 4.8 34 172-211 19-52 (201)
283 2qt1_A Nicotinamide riboside k 92.3 0.068 2.3E-06 46.2 2.8 37 172-213 20-56 (207)
284 3ake_A Cytidylate kinase; CMP 92.2 0.063 2.2E-06 46.1 2.5 33 174-212 3-35 (208)
285 2j9r_A Thymidine kinase; TK1, 92.2 0.23 7.9E-06 43.7 6.1 36 173-209 28-63 (214)
286 2p5t_B PEZT; postsegregational 92.2 0.083 2.8E-06 47.5 3.3 37 174-214 33-69 (253)
287 3def_A T7I23.11 protein; chlor 92.1 0.16 5.4E-06 45.8 5.2 20 175-195 38-57 (262)
288 2hjg_A GTP-binding protein ENG 92.1 0.061 2.1E-06 52.5 2.6 68 280-348 222-300 (436)
289 1f60_A Elongation factor EEF1A 92.1 0.35 1.2E-05 47.5 8.0 68 279-347 83-158 (458)
290 3t5d_A Septin-7; GTP-binding p 92.0 1.5 5.1E-05 39.5 11.7 19 175-194 10-28 (274)
291 1zuh_A Shikimate kinase; alpha 92.0 0.14 4.7E-06 42.5 4.3 34 173-212 7-40 (168)
292 1kag_A SKI, shikimate kinase I 92.0 0.081 2.8E-06 44.0 2.8 35 172-212 3-37 (173)
293 2grj_A Dephospho-COA kinase; T 91.9 0.11 3.7E-06 44.9 3.6 34 174-213 13-46 (192)
294 4edh_A DTMP kinase, thymidylat 91.9 0.21 7.2E-06 43.8 5.6 35 174-209 7-41 (213)
295 1jjv_A Dephospho-COA kinase; P 91.9 0.14 4.7E-06 44.1 4.3 34 172-212 1-34 (206)
296 3lw7_A Adenylate kinase relate 91.9 0.12 4.2E-06 42.5 3.8 30 175-209 3-32 (179)
297 2ehv_A Hypothetical protein PH 91.8 0.19 6.5E-06 44.2 5.3 39 173-212 30-69 (251)
298 4eun_A Thermoresistant glucoki 91.8 0.14 4.8E-06 44.0 4.3 34 173-212 29-62 (200)
299 3vaa_A Shikimate kinase, SK; s 91.8 0.15 5.1E-06 43.8 4.5 33 173-211 25-57 (199)
300 1zun_B Sulfate adenylate trans 91.8 0.35 1.2E-05 47.1 7.5 68 279-347 102-170 (434)
301 1h65_A Chloroplast outer envel 91.7 0.46 1.6E-05 42.8 7.9 67 279-347 85-167 (270)
302 3gee_A MNME, tRNA modification 91.7 0.11 3.7E-06 51.5 3.8 66 279-348 279-357 (476)
303 3hjn_A DTMP kinase, thymidylat 91.6 0.22 7.5E-06 43.0 5.3 34 176-210 3-36 (197)
304 1y63_A LMAJ004144AAA protein; 91.5 0.13 4.5E-06 43.6 3.8 33 174-211 11-43 (184)
305 2cjw_A GTP-binding protein GEM 91.5 0.7 2.4E-05 39.1 8.4 66 281-347 56-127 (192)
306 2i1q_A DNA repair and recombin 91.5 0.12 4.3E-06 48.0 3.9 39 174-213 99-153 (322)
307 1ukz_A Uridylate kinase; trans 91.4 0.14 5E-06 43.8 3.9 35 171-211 13-47 (203)
308 1gvn_B Zeta; postsegregational 91.4 0.13 4.4E-06 47.3 3.8 37 175-214 34-70 (287)
309 1zp6_A Hypothetical protein AT 91.4 0.15 5.1E-06 43.1 4.0 35 174-212 10-44 (191)
310 3geh_A MNME, tRNA modification 91.3 0.27 9.2E-06 48.4 6.2 65 279-347 270-343 (462)
311 2jeo_A Uridine-cytidine kinase 91.2 0.2 7E-06 44.5 4.8 39 173-212 25-68 (245)
312 1uf9_A TT1252 protein; P-loop, 91.2 0.15 5.2E-06 43.4 3.8 36 170-212 5-40 (203)
313 4eaq_A DTMP kinase, thymidylat 91.1 0.25 8.4E-06 43.8 5.2 36 172-209 25-60 (229)
314 4fcw_A Chaperone protein CLPB; 91.1 0.24 8.2E-06 45.3 5.3 40 174-214 48-87 (311)
315 2bwj_A Adenylate kinase 5; pho 90.9 0.14 4.6E-06 43.6 3.2 33 173-211 12-44 (199)
316 3n70_A Transport activator; si 90.7 0.12 3.9E-06 42.2 2.5 35 176-212 27-61 (145)
317 3be4_A Adenylate kinase; malar 90.7 0.19 6.3E-06 43.9 4.0 24 174-198 6-29 (217)
318 2vhj_A Ntpase P4, P4; non- hyd 90.6 0.091 3.1E-06 49.3 1.9 34 174-211 124-157 (331)
319 2pt5_A Shikimate kinase, SK; a 90.5 0.24 8E-06 40.9 4.3 32 175-212 2-33 (168)
320 2orv_A Thymidine kinase; TP4A 90.5 0.38 1.3E-05 42.8 5.7 38 171-209 17-54 (234)
321 4dhe_A Probable GTP-binding pr 90.4 0.55 1.9E-05 40.4 6.8 67 279-347 77-157 (223)
322 2hxs_A RAB-26, RAS-related pro 90.4 0.67 2.3E-05 38.0 7.1 68 280-347 55-128 (178)
323 1l8q_A Chromosomal replication 90.4 0.26 9E-06 45.6 4.9 36 175-211 39-74 (324)
324 2c95_A Adenylate kinase 1; tra 90.4 0.19 6.6E-06 42.5 3.7 33 173-211 9-41 (196)
325 3ld9_A DTMP kinase, thymidylat 90.3 0.19 6.6E-06 44.5 3.7 40 173-213 21-61 (223)
326 1ak2_A Adenylate kinase isoenz 90.3 0.22 7.4E-06 44.0 4.1 34 172-211 15-48 (233)
327 4tmk_A Protein (thymidylate ki 90.3 0.33 1.1E-05 42.5 5.3 34 174-208 4-38 (213)
328 2qtf_A Protein HFLX, GTP-bindi 90.1 0.93 3.2E-05 43.1 8.6 21 174-195 180-200 (364)
329 1tev_A UMP-CMP kinase; ploop, 90.1 0.23 7.8E-06 41.8 3.9 32 174-211 4-35 (196)
330 3cm0_A Adenylate kinase; ATP-b 90.1 0.23 7.8E-06 41.7 3.9 32 174-211 5-36 (186)
331 1aky_A Adenylate kinase; ATP:A 90.1 0.23 7.7E-06 43.3 4.0 25 173-198 4-28 (220)
332 4a74_A DNA repair and recombin 90.0 0.27 9.4E-06 42.6 4.5 39 173-212 25-69 (231)
333 2qby_B CDC6 homolog 3, cell di 90.0 0.24 8.2E-06 46.7 4.4 37 174-211 46-90 (384)
334 1ltq_A Polynucleotide kinase; 90.0 0.2 6.9E-06 45.8 3.7 35 173-212 2-36 (301)
335 3t15_A Ribulose bisphosphate c 89.9 0.23 8E-06 45.6 4.1 33 174-210 37-69 (293)
336 3sjy_A Translation initiation 89.9 0.45 1.5E-05 45.7 6.3 66 281-347 75-142 (403)
337 3v9p_A DTMP kinase, thymidylat 89.8 0.28 9.6E-06 43.5 4.4 35 174-209 26-64 (227)
338 3e1s_A Exodeoxyribonuclease V, 89.7 0.34 1.1E-05 49.1 5.4 34 174-208 205-238 (574)
339 3lv8_A DTMP kinase, thymidylat 89.6 0.34 1.1E-05 43.3 4.8 34 174-208 28-62 (236)
340 3syl_A Protein CBBX; photosynt 89.6 0.38 1.3E-05 43.9 5.3 37 174-211 68-108 (309)
341 3iij_A Coilin-interacting nucl 89.6 0.27 9.3E-06 41.2 3.9 24 174-198 12-35 (180)
342 2vli_A Antibiotic resistance p 89.6 0.14 4.7E-06 42.9 2.1 30 173-206 5-34 (183)
343 1cke_A CK, MSSA, protein (cyti 89.4 0.28 9.7E-06 42.6 4.1 24 174-198 6-29 (227)
344 2hup_A RAS-related protein RAB 89.3 1.2 4.2E-05 37.8 8.0 67 280-347 77-147 (201)
345 3izq_1 HBS1P, elongation facto 89.2 0.55 1.9E-05 47.9 6.6 69 279-347 243-318 (611)
346 1xhj_A Nitrogen fixation prote 89.2 0.35 1.2E-05 36.2 3.8 71 74-150 6-78 (88)
347 1pzn_A RAD51, DNA repair and r 89.2 0.31 1.1E-05 46.0 4.5 39 173-212 131-175 (349)
348 4i1u_A Dephospho-COA kinase; s 89.1 0.07 2.4E-06 46.9 -0.1 33 173-212 9-41 (210)
349 2g6b_A RAS-related protein RAB 89.1 0.78 2.7E-05 37.7 6.5 68 280-348 59-130 (180)
350 2qby_A CDC6 homolog 1, cell di 89.1 0.26 8.9E-06 46.2 3.8 37 174-211 46-85 (386)
351 3lda_A DNA repair protein RAD5 89.0 0.29 9.8E-06 47.3 4.1 39 173-212 178-222 (400)
352 3e2i_A Thymidine kinase; Zn-bi 89.0 2.3 7.8E-05 37.4 9.5 36 173-209 28-63 (219)
353 3cmu_A Protein RECA, recombina 88.9 0.4 1.4E-05 55.2 5.7 40 173-213 1427-1466(2050)
354 2jaq_A Deoxyguanosine kinase; 88.8 0.3 1E-05 41.4 3.7 23 175-198 2-24 (205)
355 3fb4_A Adenylate kinase; psych 88.7 0.38 1.3E-05 41.5 4.3 23 175-198 2-24 (216)
356 2fu5_C RAS-related protein RAB 88.6 0.59 2E-05 38.7 5.4 67 280-347 56-126 (183)
357 3a8t_A Adenylate isopentenyltr 88.6 0.32 1.1E-05 45.8 4.0 35 174-214 41-75 (339)
358 3aez_A Pantothenate kinase; tr 88.6 0.57 2E-05 43.5 5.7 40 173-213 90-131 (312)
359 1e4v_A Adenylate kinase; trans 88.5 0.34 1.2E-05 41.9 3.9 29 175-207 2-30 (214)
360 2bdt_A BH3686; alpha-beta prot 88.4 0.3 1E-05 41.2 3.5 23 173-196 2-24 (189)
361 2f6r_A COA synthase, bifunctio 88.2 0.39 1.3E-05 43.8 4.3 34 172-212 74-107 (281)
362 3exa_A TRNA delta(2)-isopenten 88.2 0.41 1.4E-05 44.7 4.3 34 175-213 4-37 (322)
363 1fnn_A CDC6P, cell division co 88.1 0.57 2E-05 44.0 5.5 37 175-212 46-83 (389)
364 3ch4_B Pmkase, phosphomevalona 88.0 0.44 1.5E-05 41.5 4.2 28 170-198 8-35 (202)
365 3cr8_A Sulfate adenylyltranfer 88.0 0.39 1.3E-05 48.4 4.5 39 173-212 369-408 (552)
366 2bjv_A PSP operon transcriptio 87.9 0.31 1.1E-05 43.6 3.4 37 175-212 31-67 (265)
367 2v1u_A Cell division control p 87.9 0.33 1.1E-05 45.5 3.7 38 174-212 45-88 (387)
368 3tlx_A Adenylate kinase 2; str 87.9 0.52 1.8E-05 41.9 4.8 25 173-198 29-53 (243)
369 1zak_A Adenylate kinase; ATP:A 87.8 0.31 1.1E-05 42.4 3.2 25 173-198 5-29 (222)
370 1bif_A 6-phosphofructo-2-kinas 87.6 0.54 1.8E-05 46.2 5.1 38 173-211 39-76 (469)
371 3upu_A ATP-dependent DNA helic 87.5 0.61 2.1E-05 45.7 5.4 33 176-208 47-80 (459)
372 1jwy_B Dynamin A GTPase domain 87.4 0.93 3.2E-05 41.5 6.4 69 279-348 129-212 (315)
373 3foz_A TRNA delta(2)-isopenten 87.4 0.86 2.9E-05 42.4 6.1 35 173-213 10-44 (316)
374 1zd8_A GTP:AMP phosphotransfer 87.4 0.29 1E-05 42.8 2.8 24 174-198 8-31 (227)
375 1tf7_A KAIC; homohexamer, hexa 87.3 0.63 2.2E-05 46.4 5.5 38 173-211 281-318 (525)
376 2xb4_A Adenylate kinase; ATP-b 87.3 0.47 1.6E-05 41.5 4.1 23 175-198 2-24 (223)
377 2a5y_B CED-4; apoptosis; HET: 87.2 0.4 1.4E-05 48.1 4.0 23 173-196 152-174 (549)
378 2chg_A Replication factor C sm 87.2 0.24 8.1E-06 42.2 2.0 34 176-210 41-76 (226)
379 2bbw_A Adenylate kinase 4, AK4 87.2 0.46 1.6E-05 42.1 4.0 25 173-198 27-51 (246)
380 1mky_A Probable GTP-binding pr 87.1 0.42 1.5E-05 46.5 4.0 42 304-347 263-305 (439)
381 3dl0_A Adenylate kinase; phosp 87.1 0.41 1.4E-05 41.3 3.6 23 175-198 2-24 (216)
382 4b3f_X DNA-binding protein smu 87.1 0.62 2.1E-05 47.8 5.4 35 176-210 207-241 (646)
383 1vht_A Dephospho-COA kinase; s 87.0 0.58 2E-05 40.5 4.5 32 174-212 5-36 (218)
384 2qz4_A Paraplegin; AAA+, SPG7, 86.9 0.87 3E-05 40.3 5.7 35 174-212 40-74 (262)
385 3llu_A RAS-related GTP-binding 86.9 1.2 4E-05 37.6 6.4 68 279-347 67-142 (196)
386 3qq5_A Small GTP-binding prote 86.8 0.85 2.9E-05 44.3 5.9 64 282-348 84-154 (423)
387 1w4r_A Thymidine kinase; type 86.6 0.95 3.2E-05 39.1 5.5 42 168-210 15-56 (195)
388 2eyu_A Twitching motility prot 86.5 0.96 3.3E-05 40.8 5.8 39 173-212 25-64 (261)
389 1ofh_A ATP-dependent HSL prote 86.4 0.69 2.4E-05 41.9 4.9 36 174-213 51-86 (310)
390 3l0i_B RAS-related protein RAB 86.4 0.58 2E-05 39.6 4.1 67 280-347 81-151 (199)
391 1r5b_A Eukaryotic peptide chai 86.3 0.64 2.2E-05 45.7 4.8 68 279-347 119-194 (467)
392 1g7s_A Translation initiation 86.1 0.66 2.3E-05 47.1 4.9 67 280-347 69-135 (594)
393 3umf_A Adenylate kinase; rossm 86.1 0.65 2.2E-05 40.8 4.3 25 173-198 29-53 (217)
394 1tf7_A KAIC; homohexamer, hexa 86.0 0.82 2.8E-05 45.6 5.5 39 173-212 39-78 (525)
395 2z4s_A Chromosomal replication 85.8 0.57 1.9E-05 45.7 4.2 38 173-211 130-169 (440)
396 3cb4_D GTP-binding protein LEP 85.8 0.78 2.7E-05 46.6 5.3 67 279-347 69-136 (599)
397 4ag6_A VIRB4 ATPase, type IV s 85.5 0.91 3.1E-05 43.3 5.4 35 176-211 38-72 (392)
398 1kgd_A CASK, peripheral plasma 85.4 0.51 1.8E-05 39.7 3.2 25 173-198 5-29 (180)
399 3tau_A Guanylate kinase, GMP k 85.3 0.63 2.1E-05 40.2 3.8 26 172-198 7-32 (208)
400 1w5s_A Origin recognition comp 85.2 0.64 2.2E-05 44.1 4.1 33 180-212 58-96 (412)
401 2f7s_A C25KG, RAS-related prot 85.1 0.84 2.9E-05 39.1 4.5 67 280-347 83-154 (217)
402 1lv7_A FTSH; alpha/beta domain 85.1 1.2 4E-05 39.5 5.6 33 175-211 47-79 (257)
403 3q72_A GTP-binding protein RAD 85.0 2.9 0.0001 33.5 7.6 68 279-347 47-119 (166)
404 4e22_A Cytidylate kinase; P-lo 84.9 0.63 2.2E-05 41.6 3.7 26 172-198 26-51 (252)
405 2qor_A Guanylate kinase; phosp 84.6 0.47 1.6E-05 40.7 2.6 24 174-198 13-36 (204)
406 1nij_A Hypothetical protein YJ 84.5 0.61 2.1E-05 43.3 3.5 37 174-213 5-41 (318)
407 2j41_A Guanylate kinase; GMP, 84.5 0.67 2.3E-05 39.4 3.6 25 173-198 6-30 (207)
408 3orf_A Dihydropteridine reduct 84.4 0.74 2.5E-05 40.9 3.9 41 168-213 17-57 (251)
409 2i3b_A HCR-ntpase, human cance 84.4 0.76 2.6E-05 39.4 3.8 27 175-202 3-29 (189)
410 2pt7_A CAG-ALFA; ATPase, prote 84.4 4 0.00014 38.0 9.2 35 173-209 171-205 (330)
411 2qpt_A EH domain-containing pr 84.4 0.97 3.3E-05 45.4 5.2 65 282-347 155-231 (550)
412 2yc2_C IFT27, small RAB-relate 84.4 1.2 4.1E-05 37.5 5.2 67 280-347 72-145 (208)
413 3tr0_A Guanylate kinase, GMP k 84.1 0.71 2.4E-05 39.2 3.5 25 173-198 7-31 (205)
414 1sxj_A Activator 1 95 kDa subu 83.9 0.94 3.2E-05 45.0 4.8 35 174-212 78-112 (516)
415 1xwi_A SKD1 protein; VPS4B, AA 83.7 1.2 4.1E-05 41.3 5.2 36 173-211 45-80 (322)
416 1c9k_A COBU, adenosylcobinamid 83.7 0.57 2E-05 40.0 2.7 32 176-212 2-33 (180)
417 1s0u_A EIF-2-gamma, translatio 83.6 0.95 3.3E-05 43.5 4.6 67 281-348 81-149 (408)
418 1w36_D RECD, exodeoxyribonucle 83.5 1.1 3.8E-05 45.6 5.3 33 176-208 166-202 (608)
419 2atx_A Small GTP binding prote 83.5 1.4 4.8E-05 36.8 5.1 68 280-348 65-136 (194)
420 2c5m_A CTP synthase; cytidine 83.5 1.3 4.3E-05 39.9 4.9 45 172-216 22-67 (294)
421 1d2n_A N-ethylmaleimide-sensit 83.4 1.2 4.1E-05 39.9 4.9 33 174-210 65-97 (272)
422 1um8_A ATP-dependent CLP prote 83.2 0.99 3.4E-05 42.6 4.5 35 174-212 73-107 (376)
423 3ney_A 55 kDa erythrocyte memb 83.1 0.83 2.8E-05 39.5 3.5 32 167-198 12-43 (197)
424 3b9p_A CG5977-PA, isoform A; A 83.1 1.3 4.4E-05 40.1 5.1 35 173-211 54-88 (297)
425 3ged_A Short-chain dehydrogena 83.0 0.85 2.9E-05 40.9 3.7 36 172-212 1-36 (247)
426 1n0u_A EF-2, elongation factor 83.0 1.3 4.3E-05 47.0 5.6 68 279-347 96-163 (842)
427 1ye8_A Protein THEP1, hypothet 82.9 0.94 3.2E-05 38.3 3.8 24 175-199 2-25 (178)
428 1njg_A DNA polymerase III subu 82.8 1.1 3.7E-05 38.4 4.3 27 174-201 46-72 (250)
429 3r20_A Cytidylate kinase; stru 82.7 0.96 3.3E-05 40.2 3.9 33 174-212 10-42 (233)
430 2npi_A Protein CLP1; CLP1-PCF1 82.6 0.61 2.1E-05 45.9 2.8 41 173-214 138-179 (460)
431 3nwj_A ATSK2; P loop, shikimat 82.5 0.82 2.8E-05 41.1 3.4 34 173-212 48-81 (250)
432 3te6_A Regulatory protein SIR3 82.2 1.4 4.8E-05 41.1 5.0 39 173-212 45-90 (318)
433 1w78_A FOLC bifunctional prote 82.1 1.8 6.2E-05 41.7 6.0 34 172-208 48-81 (422)
434 3d8b_A Fidgetin-like protein 1 82.1 1.4 4.9E-05 41.4 5.1 36 172-211 116-151 (357)
435 3bwd_D RAC-like GTP-binding pr 81.9 1.6 5.4E-05 35.8 4.8 68 279-347 54-125 (182)
436 1q3t_A Cytidylate kinase; nucl 81.7 1.2 4.1E-05 39.1 4.1 34 173-212 16-49 (236)
437 3h4m_A Proteasome-activating n 81.7 1.4 4.9E-05 39.5 4.7 34 174-211 52-85 (285)
438 1z6t_A APAF-1, apoptotic prote 81.4 0.98 3.4E-05 45.3 3.9 40 172-212 146-189 (591)
439 3sr0_A Adenylate kinase; phosp 81.4 1.1 3.8E-05 38.8 3.8 23 175-198 2-24 (206)
440 2dtx_A Glucose 1-dehydrogenase 81.4 4.6 0.00016 35.9 8.0 36 173-213 8-43 (264)
441 2oil_A CATX-8, RAS-related pro 81.4 2.1 7.2E-05 35.6 5.5 68 279-347 72-143 (193)
442 3reg_A RHO-like small GTPase; 81.3 1.8 6E-05 36.2 5.0 68 279-347 69-140 (194)
443 3pxg_A Negative regulator of g 81.1 1.3 4.4E-05 43.5 4.6 36 175-211 203-245 (468)
444 3a00_A Guanylate kinase, GMP k 81.1 0.76 2.6E-05 38.8 2.5 25 174-199 2-26 (186)
445 1ojl_A Transcriptional regulat 80.9 0.73 2.5E-05 42.5 2.5 37 175-212 27-63 (304)
446 3cf0_A Transitional endoplasmi 80.8 1.3 4.6E-05 40.5 4.3 33 174-210 50-82 (301)
447 2vp4_A Deoxynucleoside kinase; 80.7 1 3.6E-05 39.4 3.4 35 172-211 19-53 (230)
448 3cbq_A GTP-binding protein REM 80.7 5.6 0.00019 33.4 8.0 67 280-347 71-143 (195)
449 2gk6_A Regulator of nonsense t 80.6 1.6 5.5E-05 44.5 5.2 34 176-209 197-231 (624)
450 2ocp_A DGK, deoxyguanosine kin 80.6 0.92 3.2E-05 39.9 3.0 25 174-199 3-27 (241)
451 1jbw_A Folylpolyglutamate synt 80.5 1.7 6E-05 41.9 5.2 33 173-208 39-71 (428)
452 2qmh_A HPR kinase/phosphorylas 80.4 1.1 3.9E-05 38.9 3.4 32 173-211 34-65 (205)
453 3eie_A Vacuolar protein sortin 80.3 1.8 6.2E-05 39.9 5.1 34 173-210 51-84 (322)
454 3eag_A UDP-N-acetylmuramate:L- 80.3 1.7 5.9E-05 40.3 4.9 31 173-206 108-138 (326)
455 3hws_A ATP-dependent CLP prote 80.0 1.4 4.8E-05 41.4 4.2 34 174-211 52-85 (363)
456 2j0v_A RAC-like GTP-binding pr 80.0 1.6 5.5E-05 37.1 4.3 68 279-347 55-126 (212)
457 1e9r_A Conjugal transfer prote 80.0 1.7 5.7E-05 42.0 4.9 35 176-211 56-90 (437)
458 3zvl_A Bifunctional polynucleo 79.7 0.73 2.5E-05 44.6 2.1 33 175-212 259-291 (416)
459 1lvg_A Guanylate kinase, GMP k 79.5 1.2 3.9E-05 38.2 3.2 25 174-199 5-29 (198)
460 3tqf_A HPR(Ser) kinase; transf 79.3 1.8 6.2E-05 36.8 4.2 27 173-204 16-42 (181)
461 2aka_B Dynamin-1; fusion prote 79.2 4 0.00014 36.7 7.0 67 280-347 124-205 (299)
462 3dii_A Short-chain dehydrogena 79.2 1.4 4.7E-05 39.0 3.7 36 172-212 1-36 (247)
463 1p9r_A General secretion pathw 79.0 2.3 7.8E-05 41.2 5.4 40 172-212 166-205 (418)
464 3nrs_A Dihydrofolate:folylpoly 79.0 2.7 9.4E-05 40.7 6.0 34 172-208 51-84 (437)
465 3eph_A TRNA isopentenyltransfe 78.9 2.1 7E-05 41.3 5.0 33 174-212 3-35 (409)
466 3pxi_A Negative regulator of g 78.3 2.6 8.8E-05 43.9 6.0 39 175-214 523-561 (758)
467 2wjy_A Regulator of nonsense t 78.0 2.1 7.2E-05 45.0 5.2 33 176-208 373-406 (800)
468 1hqc_A RUVB; extended AAA-ATPa 78.0 1.7 5.7E-05 39.8 4.0 34 175-212 40-73 (324)
469 1e8c_A UDP-N-acetylmuramoylala 77.8 2.7 9.3E-05 41.5 5.7 33 173-208 108-140 (498)
470 1dek_A Deoxynucleoside monopho 77.8 1.6 5.4E-05 39.0 3.6 28 174-205 2-29 (241)
471 2ehd_A Oxidoreductase, oxidore 77.7 1.4 4.7E-05 38.3 3.2 36 172-212 4-39 (234)
472 3nva_A CTP synthase; rossman f 77.4 3.1 0.00011 41.4 5.8 44 173-216 3-47 (535)
473 3hdt_A Putative kinase; struct 77.3 1.9 6.5E-05 37.9 3.9 33 174-212 15-47 (223)
474 2fna_A Conserved hypothetical 77.2 2.2 7.5E-05 39.2 4.6 35 174-212 31-65 (357)
475 1tue_A Replication protein E1; 77.2 1.4 4.8E-05 38.5 3.0 23 175-198 60-82 (212)
476 2qp9_X Vacuolar protein sortin 77.1 2.1 7E-05 40.3 4.4 33 174-210 85-117 (355)
477 3u61_B DNA polymerase accessor 76.7 1.9 6.4E-05 39.6 3.9 33 176-211 50-82 (324)
478 3p19_A BFPVVD8, putative blue 76.6 1.9 6.6E-05 38.6 3.9 36 172-212 15-50 (266)
479 3sfz_A APAF-1, apoptotic pepti 76.5 1.8 6.3E-05 47.0 4.4 41 171-212 145-189 (1249)
480 1htw_A HI0065; nucleotide-bind 76.4 2.2 7.5E-05 35.3 3.9 25 173-198 33-57 (158)
481 1qvr_A CLPB protein; coiled co 76.4 1.9 6.5E-05 45.7 4.3 36 175-211 193-235 (854)
482 2wtz_A UDP-N-acetylmuramoyl-L- 76.4 3.1 0.00011 41.5 5.7 34 172-208 145-178 (535)
483 1o5z_A Folylpolyglutamate synt 76.4 2.4 8.2E-05 41.2 4.8 33 173-208 52-84 (442)
484 1vt4_I APAF-1 related killer D 76.3 2.2 7.7E-05 46.3 4.8 39 173-212 150-191 (1221)
485 2q3h_A RAS homolog gene family 76.3 3 0.0001 34.9 4.8 67 280-347 67-137 (201)
486 1in4_A RUVB, holliday junction 76.1 1.8 6.1E-05 40.3 3.6 24 174-198 52-75 (334)
487 2v9p_A Replication protein E1; 75.9 2.3 7.8E-05 39.3 4.2 30 173-206 126-155 (305)
488 1znw_A Guanylate kinase, GMP k 75.7 1.8 6.1E-05 37.1 3.3 26 173-199 20-45 (207)
489 1sxj_C Activator 1 40 kDa subu 75.6 1.4 4.6E-05 41.1 2.7 35 176-211 49-83 (340)
490 3guy_A Short-chain dehydrogena 75.6 1.7 5.8E-05 37.7 3.2 35 173-212 1-35 (230)
491 1p5z_B DCK, deoxycytidine kina 75.5 0.72 2.5E-05 41.3 0.7 26 172-198 23-48 (263)
492 3lk7_A UDP-N-acetylmuramoylala 75.5 3.2 0.00011 40.4 5.4 31 174-207 113-143 (451)
493 2vos_A Folylpolyglutamate synt 75.4 3.4 0.00012 40.7 5.7 33 173-208 64-96 (487)
494 1qvr_A CLPB protein; coiled co 75.4 2.6 8.9E-05 44.6 5.1 39 175-214 590-628 (854)
495 4b4t_K 26S protease regulatory 75.1 3.4 0.00012 40.1 5.4 36 172-211 205-240 (428)
496 3lnc_A Guanylate kinase, GMP k 75.1 1.3 4.6E-05 38.5 2.4 25 173-198 27-52 (231)
497 2zan_A Vacuolar protein sortin 75.1 2.8 9.5E-05 40.7 4.9 36 173-211 167-202 (444)
498 2ekp_A 2-deoxy-D-gluconate 3-d 75.1 2.1 7.2E-05 37.4 3.7 35 173-212 2-36 (239)
499 4gp7_A Metallophosphoesterase; 74.8 1.8 6E-05 36.0 2.9 20 173-193 9-28 (171)
500 1z6g_A Guanylate kinase; struc 74.7 1.6 5.5E-05 37.9 2.7 34 173-211 23-56 (218)
No 1
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.96 E-value=6.8e-29 Score=230.49 Aligned_cols=201 Identities=41% Similarity=0.650 Sum_probs=153.4
Q ss_pred ccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeec--ccCC
Q 017486 167 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPT--EYLG 244 (370)
Q Consensus 167 ~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~--~~~~ 244 (370)
.++++++++|+|+|+|||+||||+|+|||.+||+.|+||++||+|++++++..+|+....... .....+.+. ..++
T Consensus 12 ~~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~ 89 (262)
T 2ph1_A 12 ERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIA--VSAEGLEPVLTQKYG 89 (262)
T ss_dssp HHHTTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCE--EETTEEECEECTTTC
T ss_pred hhhccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcccc--ccccCccccccCCCC
Confidence 456778899999999999999999999999999999999999999999888888886542110 011222222 4578
Q ss_pred eeEEecCCCCcc---ccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHH
Q 017486 245 VKLVSFGFSGQG---RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (370)
Q Consensus 245 l~vl~~g~~~~~---~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~ 321 (370)
++++|.+..... ...+.++.....++++++.+.++.||||||||||+.++..+....+..+|.+++|+.++..++..
T Consensus 90 l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~ 169 (262)
T 2ph1_A 90 IKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVI 169 (262)
T ss_dssp CEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHH
T ss_pred eEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHH
Confidence 999997754321 12234455667888888877557899999999999987655544444679999999999999999
Q ss_pred HHHHHHHHHcCCCCeEEEEEcCCccCC--CCccccccCCChHHHHHhHcC
Q 017486 322 VAKGVRMFSKLKVPCIAVVENMCHFDA--DGKRYYPFGRGSGSQVCTLSN 369 (370)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~v~~~~--~~~~~~~~g~~~~~~~a~~~~ 369 (370)
+.++++.+++.+.+++|+|+||++..+ +..+...|+....+.+.+.+|
T Consensus 170 ~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 219 (262)
T 2ph1_A 170 VEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYN 219 (262)
T ss_dssp HHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcC
Confidence 999999999999999999999998643 223334455555567777665
No 2
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.96 E-value=2.8e-28 Score=229.31 Aligned_cols=173 Identities=17% Similarity=0.222 Sum_probs=138.1
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc------ccccCCCCCceeecccCCe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~------~~~~~~~~~~i~~~~~~~l 245 (370)
..++|+|+|+|||+||||+|+|||..||+.|+||++||+|+++++++.+|+.+.. +.......+.+.+...+++
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 4579999999999999999999999999999999999999999999999886543 2223344566777777899
Q ss_pred eEEecCCCC-ccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHH
Q 017486 246 KLVSFGFSG-QGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 246 ~vl~~g~~~-~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (370)
+++|.+... +...++..+.+...++++ + +.||+|||||||......... ....+|.+++|+.++.++...+.+
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~~l----~-~~yD~VIIDtpp~~~~~da~~-l~~~aD~vllVv~~~~~~~~~~~~ 244 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVNWA----S-KNYDLVLIDTPPILAVTDAAI-VGRHVGTTLMVARYAVNTLKEVET 244 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHH----H-HHCSEEEEECCCTTTCTHHHH-HTTTCSEEEEEEETTTSBHHHHHH
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHHHH----H-hCCCEEEEcCCCCcchHHHHH-HHHHCCeEEEEEeCCCCcHHHHHH
Confidence 999988753 333455555555555554 3 689999999999775322211 123469999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCccCCCC
Q 017486 325 GVRMFSKLKVPCIAVVENMCHFDADG 350 (370)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~v~~~~~~ 350 (370)
+++.+++.+.+++|+|+|+++....+
T Consensus 245 ~~~~l~~~g~~~~GvVlN~v~~~~~~ 270 (286)
T 3la6_A 245 SLSRFEQNGIPVKGVILNSIFRRASA 270 (286)
T ss_dssp HHHHHHHTTCCCCEEEEEEECCCCCT
T ss_pred HHHHHHhCCCCEEEEEEcCccccccC
Confidence 99999999999999999999876543
No 3
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.95 E-value=5.9e-28 Score=225.51 Aligned_cols=173 Identities=22% Similarity=0.263 Sum_probs=130.9
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc------ccccCCCCCceeecccCCe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~------~~~~~~~~~~i~~~~~~~l 245 (370)
.+++|+|+|.|||+||||+|+|||.+||+.|+||++||+|+++|+++.+|+.... +.......+.+.+...+++
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 160 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIEDL 160 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCCE
Confidence 4679999999999999999999999999999999999999999999988886543 1111122344555556899
Q ss_pred eEEecCCCCc-cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHH
Q 017486 246 KLVSFGFSGQ-GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 246 ~vl~~g~~~~-~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (370)
+++|.|.... ...++..+.+...++++ + +.||||||||||...... ..+. ..+|.+++|+.++..+...+.
T Consensus 161 ~vl~~g~~~~~~~ell~~~~l~~ll~~l----~-~~yD~VIIDtpp~~~~~d~~~l~--~~aD~vilVv~~~~~~~~~~~ 233 (271)
T 3bfv_A 161 DVLTSGPIPPNPSELITSRAFANLYDTL----L-MNYNFVIIDTPPVNTVTDAQLFS--KFTGNVVYVVNSENNNKDEVK 233 (271)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHH----H-HHCSEEEEECCCTTTCSHHHHHH--HHHCEEEEEEETTSCCHHHHH
T ss_pred EEEECCCCCCCHHHHhChHHHHHHHHHH----H-hCCCEEEEeCCCCchHHHHHHHH--HHCCEEEEEEeCCCCcHHHHH
Confidence 9999886533 33344444444444444 3 689999999999764321 2222 234999999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCccCCCCc
Q 017486 324 KGVRMFSKLKVPCIAVVENMCHFDADGK 351 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~v~~~~~~~ 351 (370)
++++.+++.+.+++|+|+|+++....++
T Consensus 234 ~~~~~l~~~~~~~~GvVlN~~~~~~~~y 261 (271)
T 3bfv_A 234 KGKELIEATGAKLLGVVLNRMPKDKSAS 261 (271)
T ss_dssp HHHHHHHTTTCEEEEEEEEEECC-----
T ss_pred HHHHHHHhCCCCEEEEEEeCCcCCCCCc
Confidence 9999999999999999999998765443
No 4
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.95 E-value=1.7e-27 Score=225.54 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=132.0
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc------ccccCCCCCceeecccCCe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~------~~~~~~~~~~i~~~~~~~l 245 (370)
.+++|+|+|.|||+||||+|+|||..||+.|+||++||+|+++++++.+|+.... +.......+.+.+...+++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 4579999999999999999999999999999999999999999999988886542 1111122334555556899
Q ss_pred eEEecCCCCcc-ccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHH
Q 017486 246 KLVSFGFSGQG-RAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 246 ~vl~~g~~~~~-~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (370)
+++|.|..... ..++..+.+...++++ + +.||||||||||+......... ...+|.+++|+.++..+...+.+
T Consensus 183 ~vl~~g~~~~~~~ell~~~~l~~ll~~l----~-~~yD~VIIDtpp~~~~~d~~~l-~~~ad~vilV~~~~~~~~~~~~~ 256 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRDRMRQLLEWA----N-DHYDLVIVDTPPMLAVSDAAVV-GRSVGTSLLVARFGLNTAKEVSL 256 (299)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHHHH----H-HHCSEEEEECCCTTTCTHHHHH-GGGCSEEEEEEETTTSCTTHHHH
T ss_pred EEEECCCCCCCHHHHhCHHHHHHHHHHH----H-hCCCEEEEcCCCCchhHHHHHH-HHHCCEEEEEEcCCCChHHHHHH
Confidence 99998865332 3344444444444444 3 6899999999997752211111 23469999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCccCC
Q 017486 325 GVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+++.+++.+.+++|+|+|+++...
T Consensus 257 ~~~~l~~~~~~~~GvVlN~~~~~~ 280 (299)
T 3cio_A 257 SMQRLEQAGVNIKGAILNGVIKRA 280 (299)
T ss_dssp HHHHHHHTTCCCCCEEEEECCCCC
T ss_pred HHHHHHhCCCCeEEEEEeCCccCC
Confidence 999999999999999999998765
No 5
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.94 E-value=1.5e-26 Score=211.59 Aligned_cols=171 Identities=17% Similarity=0.245 Sum_probs=129.1
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCCCCCCCcCCC-Cccc--ccc---c-CCCC----Ccee
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVS-PENR--LLE---M-NPEK----RTII 238 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~~~sl~~~l~-~~~~--~~~---~-~~~~----~~i~ 238 (370)
+++++|+|+|+|||+||||+|+|||.+||+. |+||++||+|++.++++.+|+ .... +.. . .... ..+.
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMV 81 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHS
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHh
Confidence 3578999999999999999999999999998 999999999999889998884 2221 110 0 0001 1233
Q ss_pred ecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcch
Q 017486 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA 318 (370)
Q Consensus 239 ~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s 318 (370)
....++++++|.+........+.. ..++++++.++ +.||||||||||+.+...... +..+|.+++|+.++..+
T Consensus 82 ~~~~~~l~~l~~~~~~~~~~~~~~----~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~ad~viiv~~~~~~~ 154 (245)
T 3ea0_A 82 QHISPSLDLIPSPATFEKIVNIEP----ERVSDLIHIAA-SFYDYIIVDFGASIDHVGVWV--LEHLDELCIVTTPSLQS 154 (245)
T ss_dssp EEEETTEEEECCCSSHHHHHHCCH----HHHHHHHHHHH-HHCSEEEEEEESSCCTTHHHH--GGGCSEEEEEECSSHHH
T ss_pred EecCCCeEEEcCCCChHhhhcCCH----HHHHHHHHHHH-hhCCEEEEeCCCCCchHHHHH--HHHCCEEEEEecCcHHH
Confidence 344579999997754333222322 34555555544 689999999999987655544 55679999999999999
Q ss_pred HHHHHHHHHHHHcCC--CCeEEEEEcCCccCC
Q 017486 319 FIDVAKGVRMFSKLK--VPCIAVVENMCHFDA 348 (370)
Q Consensus 319 ~~~~~~~~~~l~~~~--~~~~gvV~N~v~~~~ 348 (370)
+..+.++++.+++.+ ...+|+|+||++.+.
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~ 186 (245)
T 3ea0_A 155 LRRAGQLLKLCKEFEKPISRIEIILNRADTNS 186 (245)
T ss_dssp HHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEecCCCCC
Confidence 999999999999887 567999999998653
No 6
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.94 E-value=4.6e-26 Score=207.38 Aligned_cols=170 Identities=21% Similarity=0.290 Sum_probs=130.1
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc---c---c-ccCCCCCceeecccCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---L---L-EMNPEKRTIIPTEYLG 244 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~---~---~-~~~~~~~~i~~~~~~~ 244 (370)
|+++|+|+|+|||+||||+|+|||.+|+++|+||++||+|+++++++.+|+.+.. + . ......+.+.+....+
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 80 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDN 80 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTT
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCC
Confidence 5689999999999999999999999999999999999999998899888886543 1 1 1111223344433479
Q ss_pred eeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHH
Q 017486 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 245 l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (370)
++++|.........+... ..+.++++.++ +.|||||||+||+.+...... +..+|.+++|+.++..++.++.+
T Consensus 81 l~~lp~~~~~~~~~~~~~----~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 153 (237)
T 1g3q_A 81 VYVLPGAVDWEHVLKADP----RKLPEVIKSLK-DKFDFILIDCPAGLQLDAMSA--MLSGEEALLVTNPEISCLTDTMK 153 (237)
T ss_dssp EEEECCCCSHHHHHHCCG----GGHHHHHHTTG-GGCSEEEEECCSSSSHHHHHH--HTTCSEEEEEECSCHHHHHHHHH
T ss_pred EEEEeCCCccchhhhcCH----HHHHHHHHHHH-hcCCEEEEECCCCcCHHHHHH--HHHCCeEEEEecCCcccHHHHHH
Confidence 999993322111111112 23555666554 789999999999988554433 56679999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCccCC
Q 017486 325 GVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+++.+++.+.+.+|+|+||++...
T Consensus 154 ~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 154 VGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEEETSCT
T ss_pred HHHHHHhCCCceEEEEEecCCccc
Confidence 999999988899999999998754
No 7
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.93 E-value=1.9e-25 Score=205.95 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=127.7
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccc--------cccCCCCCceee-ccc
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL--------LEMNPEKRTIIP-TEY 242 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~--------~~~~~~~~~i~~-~~~ 242 (370)
|+++|+|+|+|||+||||+|+|||.+||++|+||++||+|+++++++.+||.+... .......+.+.. ...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 80 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence 57899999999999999999999999999999999999999888999998876431 111111122333 234
Q ss_pred CCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCC-CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHH
Q 017486 243 LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG-ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (370)
Q Consensus 243 ~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~-~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~ 321 (370)
++++++|.+.... ...+.. ..+.++++.++ . .||||||||||+.+...... +..+|.+++|++++..++..
T Consensus 81 ~~l~~lp~~~~~~-~~~~~~----~~~~~~l~~l~-~~~yD~viiD~p~~~~~~~~~~--l~~ad~vi~v~~~~~~s~~~ 152 (260)
T 3q9l_A 81 ENLYILPASQTRD-KDALTR----EGVAKVLDDLK-AMDFEFIVCDSPAGIETGALMA--LYFADEAIITTNPEVSSVRD 152 (260)
T ss_dssp TTEEEECCCSCCC-TTSSCH----HHHHHHHHHHH-HTTCSEEEEECCSSSSHHHHHH--HHTCSEEEEEECSSHHHHHH
T ss_pred CCEEEecCCCccc-hhhCCH----HHHHHHHHHHh-ccCCCEEEEcCCCCCCHHHHHH--HHhCCEEEEEecCChhHHHH
Confidence 7999999876532 222222 33455555544 5 89999999999988644433 55789999999999999999
Q ss_pred HHHHHHHHHcCCC--------CeEEEEEcCCccC
Q 017486 322 VAKGVRMFSKLKV--------PCIAVVENMCHFD 347 (370)
Q Consensus 322 ~~~~~~~l~~~~~--------~~~gvV~N~v~~~ 347 (370)
+.++++.+++.+. ..+|+|+||++.+
T Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 153 SDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp HHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred HHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 9999999987652 5789999998763
No 8
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.92 E-value=2.6e-25 Score=205.81 Aligned_cols=169 Identities=27% Similarity=0.324 Sum_probs=127.7
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc---c---c-ccCCCCCceeecccCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR---L---L-EMNPEKRTIIPTEYLG 244 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~---~---~-~~~~~~~~i~~~~~~~ 244 (370)
|+++|+|+|+|||+||||+|+|||.+|+++|+||++||+|+++++++.+|+.+.. + . ......+.+.+ ...+
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~-~~~~ 79 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYV-GPGG 79 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEE-CGGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhhee-CCCC
Confidence 5689999999999999999999999999999999999999998899888886543 1 1 11112223333 2478
Q ss_pred eeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHH
Q 017486 245 VKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAK 324 (370)
Q Consensus 245 l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~ 324 (370)
++++|.+.......... ...+.++++.+. +.|||||||+||+.+...... +..+|.+++|+.++..++.++.+
T Consensus 80 l~~lp~~~~~~~~~~~~----~~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--~~~ad~vi~v~~~~~~~~~~~~~ 152 (263)
T 1hyq_A 80 VKVVPAGVSLEGLRKAN----PEKLEDVLTQIM-ESTDILLLDAPAGLERSAVIA--IAAAQELLLVVNPEISSITDGLK 152 (263)
T ss_dssp CEEEECCSCHHHHHHHC----HHHHHHHHHHHH-HTCSEEEEECCSSSSHHHHHH--HHHSSEEEEEECSSHHHHHHHHH
T ss_pred eEEEcCCCCcChhhccC----hHHHHHHHHHHH-hhCCEEEEeCCCCCChHHHHH--HHHCCEEEEEeCCChhHHHHHHH
Confidence 99999332211111111 334555555554 789999999999988554443 45679999999999999999999
Q ss_pred HHHHHHcCCCCeEEEEEcCCccCC
Q 017486 325 GVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 325 ~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+++.+++.+.+.+|+|+||++...
T Consensus 153 ~~~~l~~~~~~~~~vv~N~~~~~~ 176 (263)
T 1hyq_A 153 TKIVAERLGTKVLGVVVNRITTLG 176 (263)
T ss_dssp HHHHHHHHTCEEEEEEEEEECTTT
T ss_pred HHHHHHhcCCCeeEEEEccCCccc
Confidence 999999888899999999998643
No 9
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.92 E-value=1.4e-25 Score=217.77 Aligned_cols=174 Identities=21% Similarity=0.184 Sum_probs=122.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc---------------------cccc--
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN---------------------RLLE-- 229 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~---------------------~~~~-- 229 (370)
||+|+|+|+||||||||+|+|||.+||+.|+|||+||+|++++....+++.+. .+..
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l 80 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIF 80 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHH
Confidence 58999999999999999999999999999999999999999877666655321 1111
Q ss_pred ------cCCCCC--ceeecccCCeeEEecCCCCccccc-cCC--------ch----HHHHHHHHHHhcC-CCCCcEEEEc
Q 017486 230 ------MNPEKR--TIIPTEYLGVKLVSFGFSGQGRAI-MRG--------PM----VSGVINQLLTTTE-WGELDYLVID 287 (370)
Q Consensus 230 ------~~~~~~--~i~~~~~~~l~vl~~g~~~~~~~~-~~~--------~~----~~~~l~~ll~~~~-~~~yD~VIID 287 (370)
.....+ .+.....+|++++|++........ +.. .. ....++++++.++ +..|||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~yD~VIID 160 (361)
T 3pg5_A 81 VPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFD 160 (361)
T ss_dssp HHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhhccCCCEEEEE
Confidence 111111 244445569999998754332211 100 00 0123555555553 2489999999
Q ss_pred CCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcC------------------C----------------
Q 017486 288 MPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL------------------K---------------- 333 (370)
Q Consensus 288 tpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~------------------~---------------- 333 (370)
|||+++.....+ +.++|.+++|+.++..++..+.++++.+++. +
T Consensus 161 ~pP~l~~~~~~a--L~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 238 (361)
T 3pg5_A 161 VGPSLGPFNRTV--LLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGFD 238 (361)
T ss_dssp CCSCCSHHHHHH--HTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSSS
T ss_pred CCCCcCHHHHHH--HHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcccccccccccccccc
Confidence 999998655444 6678999999999999999999888887654 1
Q ss_pred ---CCeEEEEEcCCccCC
Q 017486 334 ---VPCIAVVENMCHFDA 348 (370)
Q Consensus 334 ---~~~~gvV~N~v~~~~ 348 (370)
.+++|+|+|+++.+.
T Consensus 239 ~~~l~~lG~v~n~~~~r~ 256 (361)
T 3pg5_A 239 GEGLRYLGYTTLEYVKRR 256 (361)
T ss_dssp SSCCEEEEEEECC-----
T ss_pred ccccceeeEEEEcchhhc
Confidence 778999999999865
No 10
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.92 E-value=3.8e-25 Score=205.41 Aligned_cols=171 Identities=23% Similarity=0.152 Sum_probs=124.1
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCc---------cc----ccccCCCCCce
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE---------NR----LLEMNPEKRTI 237 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~---------~~----~~~~~~~~~~i 237 (370)
+++++|+|+|+|||+||||+|+|||.+|| +|+||++||+|++++....+++.. .. +.......+.+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~i 103 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDSTI 103 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGGC
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHhh
Confidence 46799999999999999999999999999 999999999999986554443211 00 11111222333
Q ss_pred eecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc
Q 017486 238 IPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 317 (370)
Q Consensus 238 ~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~ 317 (370)
.+. .+|++++|.+.................+.++++.+. +.||||||||||+.+...... +..+|.+++|++++..
T Consensus 104 ~~~-~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~~~~~~~--l~~aD~vivv~~~~~~ 179 (267)
T 3k9g_A 104 INV-DNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLY-YKYDYIVIDTNPSLDVTLKNA--LLCSDYVIIPMTAEKW 179 (267)
T ss_dssp EEE-ETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTC-TTCSEEEEEECSSCSHHHHHH--HTTCSEEEEEEESCTT
T ss_pred ccC-CCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhh-cCCCEEEEECcCCccHHHHHH--HHHCCeEEEEeCCChH
Confidence 333 479999998754322211111112345666776665 789999999999998654443 5568999999999999
Q ss_pred hHHHHHHHHHHHHcCCCC-eEEEEEcCCcc
Q 017486 318 AFIDVAKGVRMFSKLKVP-CIAVVENMCHF 346 (370)
Q Consensus 318 s~~~~~~~~~~l~~~~~~-~~gvV~N~v~~ 346 (370)
++..+.++++.+++.+.+ .+++|+||+..
T Consensus 180 s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 180 AVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp HHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 999999999999988653 35799999943
No 11
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.92 E-value=1.9e-24 Score=205.61 Aligned_cols=172 Identities=20% Similarity=0.172 Sum_probs=123.3
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc-cc---------ccCCCCCceeecc
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR-LL---------EMNPEKRTIIPTE 241 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~-~~---------~~~~~~~~i~~~~ 241 (370)
..|+|+|+ +||||||||+|+|||.+||+.|+||++||+|++.++...+++.... .. ......+.+....
T Consensus 47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~ 125 (314)
T 3fwy_A 47 GAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFEG 125 (314)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEEC
T ss_pred CceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheeec
Confidence 46899998 8999999999999999999999999999999998776554432211 00 0000111233344
Q ss_pred cCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHH
Q 017486 242 YLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFID 321 (370)
Q Consensus 242 ~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~ 321 (370)
..++.+++.+...... .+........+..+.....++.||||++|+|++.....+. ..+.++|.+++|++++..++.+
T Consensus 126 ~~~i~~v~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~-~al~aAd~viIvt~~e~~Al~~ 203 (314)
T 3fwy_A 126 FNGVMCVEAGGPPAGT-GCGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-APLQHADQAVVVTANDFDSIYA 203 (314)
T ss_dssp GGGCEEEECCCCCTTC-SCTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-GGGGTCSEEEEEECSSHHHHHH
T ss_pred CCCeEEEeCCCCcccc-hhhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH-hHHhhCCeEEEEeCCcHHHHHH
Confidence 5688999877543222 2333444556666665545688999999999987644332 3356789999999999999999
Q ss_pred HHHHHHHHHcC----CCCeEEEEEcCCcc
Q 017486 322 VAKGVRMFSKL----KVPCIAVVENMCHF 346 (370)
Q Consensus 322 ~~~~~~~l~~~----~~~~~gvV~N~v~~ 346 (370)
+.++++.++.. +.++.|+|+|+.+.
T Consensus 204 ~~~l~~~i~~~~~~~~~~l~GiI~n~~~~ 232 (314)
T 3fwy_A 204 MNRIIAAVQAKSKNYKVRLAGCVANRSRA 232 (314)
T ss_dssp HHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHHHHHHHHHHhccCCCceEEEEEcCCCc
Confidence 99888877653 56678999998664
No 12
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.92 E-value=3.4e-25 Score=204.85 Aligned_cols=166 Identities=23% Similarity=0.329 Sum_probs=120.3
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--c---cccCCCCCceeecccCCe
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMNPEKRTIIPTEYLGV 245 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~---~~~~~~~~~i~~~~~~~l 245 (370)
+.+++|+|+|+|||+||||+|+|||.+||++|+||++||+|+++ ++..+|+.... + .......+.+.+ .+++
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~-~~~~~l~~~~~~~l~~~l~~~~~~~~i~~--~~~l 80 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQG-NATSGLGVRAERGVYHLLQGEPLEGLVHP--VDGF 80 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTC-HHHHHTTCCCSCCHHHHHTTCCGGGTCEE--ETTE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCc-CHHHHhCCCCCCCHHHHHcCCCHHHHccc--cCCE
Confidence 35689999999999999999999999999999999999999985 56666765431 1 111122223333 5789
Q ss_pred eEEecCCCCccc--cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHH
Q 017486 246 KLVSFGFSGQGR--AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 246 ~vl~~g~~~~~~--~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~ 323 (370)
+++|.+...... .+.... ..+.++++. +.||||||||||+.+...... +..+|.+++|+.++..++..+.
T Consensus 81 ~vlp~~~~~~~~~~~l~~~~---~~l~~~l~~---~~yD~iiiD~pp~~~~~~~~~--l~~aD~viiv~~~~~~s~~~~~ 152 (257)
T 1wcv_1 81 HLLPATPDLVGATVELAGAP---TALREALRD---EGYDLVLLDAPPSLSPLTLNA--LAAAEGVVVPVQAEYYALEGVA 152 (257)
T ss_dssp EEECCCTTHHHHHHHHTTCT---THHHHHCCC---TTCSEEEEECCSSCCHHHHHH--HHHCSEEEEEEESSTHHHHHHH
T ss_pred EEEeCChhHHHHHHHHhhHH---HHHHHHhcc---cCCCEEEEeCCCCCCHHHHHH--HHHCCeEEEEecCchHHHHHHH
Confidence 999977542211 111110 335555432 689999999999988654433 4567999999999999999988
Q ss_pred HHHHHHHc------CCCCeEEEEEcCCccC
Q 017486 324 KGVRMFSK------LKVPCIAVVENMCHFD 347 (370)
Q Consensus 324 ~~~~~l~~------~~~~~~gvV~N~v~~~ 347 (370)
++++.+++ .+.+++|+|+||++.+
T Consensus 153 ~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 153 GLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 88877764 2567789999999764
No 13
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.91 E-value=1.8e-24 Score=197.83 Aligned_cols=167 Identities=17% Similarity=0.103 Sum_probs=121.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccccccc----CC------------------
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEM----NP------------------ 232 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~----~~------------------ 232 (370)
.|+| |+|||+||||+|+|||.+||++|+||++||+|++ ++++.+||........ ..
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN 79 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence 4888 8999999999999999999999999999999997 8999888865432100 00
Q ss_pred CCCceee----cccCCeeE-EecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCe
Q 017486 233 EKRTIIP----TEYLGVKL-VSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTA 307 (370)
Q Consensus 233 ~~~~i~~----~~~~~l~v-l~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~ 307 (370)
..-...+ ....++++ ++.+.......... ......+.++++.+.+++||||||||||+.+...... +..+|.
T Consensus 80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~l~~l~~~~yD~viiD~pp~~~~~~~~~--l~~aD~ 156 (254)
T 3kjh_A 80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY-CRENSFLGSVVSALFLDKKEAVVMDMGAGIEHLTRGT--AKAVDM 156 (254)
T ss_dssp CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC-HHHHHHHHHHHHHHHHTCCSEEEEEECTTCTTCCHHH--HTTCSE
T ss_pred CchhccHHhcccccCCeEEEEEecccccCCCCCC-cchHHHHHHHHHHhccCCCCEEEEeCCCcccHHHHHH--HHHCCE
Confidence 0000111 12346777 77664322211111 0111346666666512899999999999987644433 567899
Q ss_pred EEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 308 AVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 308 viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
+++|++++..++..+.++.+.+.+.+.+.+++|+||++.
T Consensus 157 viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 157 MIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred EEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 999999999999999999999999999889999999885
No 14
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.91 E-value=2.6e-24 Score=207.93 Aligned_cols=190 Identities=19% Similarity=0.199 Sum_probs=128.6
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
..+++|+|+|+|||+||||+|+|||.++|+.|+||++||+|+ +++++.+|+.+....... -...+++.....
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~-------v~g~~~l~~~~i 94 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHSLRDIFEQEFGHEPTK-------VKGYDNLYVVEI 94 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCHHHHHHCSCCCSSCEE-------CTTCSSEEEEEC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHhCCCCCcCccc-------cccccceeeecc
Confidence 456899999999999999999999999999999999999999 568888887653210000 000112222211
Q ss_pred CCC-----------------------Cc----cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-HHhh-
Q 017486 251 GFS-----------------------GQ----GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLCQ- 301 (370)
Q Consensus 251 g~~-----------------------~~----~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l-~~~~- 301 (370)
... .. ......+......+.++.+.+++.+||||||||||+.....+ .+..
T Consensus 95 d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VIiDtpPt~~tlrlL~~p~~ 174 (349)
T 3ug7_A 95 DPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVIFDTAPTGHTLRFLGMPEV 174 (349)
T ss_dssp CHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEEECSCCCTTGGGGGGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCChHHHHHHhhHHH
Confidence 100 00 000112222223344444444457899999999996432110 0000
Q ss_pred ---------------------------------------------------------Hh--CCCeEEEEecCCcchHHHH
Q 017486 302 ---------------------------------------------------------VV--PLTAAVIVTTPQKLAFIDV 322 (370)
Q Consensus 302 ---------------------------------------------------------~~--~~d~viiV~~p~~~s~~~~ 322 (370)
+. ..+.+++|++|+..++.++
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e~ 254 (349)
T 3ug7_A 175 MDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILES 254 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHHH
Confidence 00 1378999999999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccC---C--CCccccccCCChHHHHHhHcC
Q 017486 323 AKGVRMFSKLKVPCIAVVENMCHFD---A--DGKRYYPFGRGSGSQVCTLSN 369 (370)
Q Consensus 323 ~~~~~~l~~~~~~~~gvV~N~v~~~---~--~~~~~~~~g~~~~~~~a~~~~ 369 (370)
+++++.+++.++++.|+|+||+.+. | ++.+++.| .++.+++++.|+
T Consensus 255 ~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~-~~~l~~i~~~~~ 305 (349)
T 3ug7_A 255 ERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQ-LKRLEMIKEKFG 305 (349)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHH-HHHHHHHHHHST
T ss_pred HHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHH-HHHHHHHHHHcC
Confidence 9999999999999999999999986 3 34555667 667888988875
No 15
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.90 E-value=1.5e-23 Score=198.73 Aligned_cols=170 Identities=22% Similarity=0.198 Sum_probs=118.3
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc------ccc------cCCCCCcee
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLE------MNPEKRTII 238 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~------~~~------~~~~~~~i~ 238 (370)
+.+++|+|+ +|||+||||+|+|||.+||++|+||++||+|++++. ...++.... +.. .....+.+.
T Consensus 39 ~~~~vI~v~-~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~-~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~ 116 (307)
T 3end_A 39 TGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDS-TFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVF 116 (307)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCT-THHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCE
T ss_pred CCceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCH-HHHhCccCCCCHHHHHhhccccccCCCHHHhhc
Confidence 457899999 899999999999999999999999999999998744 444432211 100 111112222
Q ss_pred ecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhc-CCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc
Q 017486 239 PTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTT-EWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL 317 (370)
Q Consensus 239 ~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~-~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~ 317 (370)
....|++++|.+........ ... ......++++.. .++.||||||||||+....... ..+..+|.+++|++++..
T Consensus 117 -~~~~~l~vlp~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~yD~ViiD~p~~~~~~~~~-~~l~~aD~viiv~~~~~~ 192 (307)
T 3end_A 117 -EGFNGVMCVEAGGPPAGTGC-GGY-VVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA-APLQHADQAVVVTANDFD 192 (307)
T ss_dssp -ECGGGCEEEECCCCCSSSSC-TTH-HHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG-GGGGTCSEEEEEECSSHH
T ss_pred -cCCCCceEEECCCccccccc-chh-hhHHHHHHHHhhhccccCCEEEEeCCCccchHHHH-HHHHHCCEEEEEecCcHH
Confidence 35679999998764322211 111 112222333331 2378999999999987643221 224567999999999999
Q ss_pred hHHHHHHHHHHHHc----CCCCeEEEEEcCCcc
Q 017486 318 AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (370)
Q Consensus 318 s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~ 346 (370)
++..+.++++.+++ .+.+++|+|+||++.
T Consensus 193 s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 193 SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 99999999999986 466779999999985
No 16
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.90 E-value=5.2e-25 Score=210.72 Aligned_cols=195 Identities=16% Similarity=0.187 Sum_probs=124.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccccc--c-------cCCCCCceeeccc-
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--E-------MNPEKRTIIPTEY- 242 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~--~-------~~~~~~~i~~~~~- 242 (370)
+++|+|+|+|||+||||+|+|||.++|+.|+||++||+|+ +++++.+|+.+.... . .............
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~~ 91 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQA 91 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHHH
Confidence 4799999999999999999999999999999999999999 678888887642100 0 0000000000000
Q ss_pred ----CCeeEEecCCC--Cc---cccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH-HHHh------------
Q 017486 243 ----LGVKLVSFGFS--GQ---GRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-LTLC------------ 300 (370)
Q Consensus 243 ----~~l~vl~~g~~--~~---~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-l~~~------------ 300 (370)
....+++.+.. .. ....+.+......+.++.+.+++.+||+|||||||+.+... +.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~~ 171 (324)
T 3zq6_A 92 KLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMIK 171 (324)
T ss_dssp HC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence 00012222211 00 01122333333344444444445789999999999432100 0000
Q ss_pred --------------------------------------------hHhC--CCeEEEEecCCcchHHHHHHHHHHHHcCCC
Q 017486 301 --------------------------------------------QVVP--LTAAVIVTTPQKLAFIDVAKGVRMFSKLKV 334 (370)
Q Consensus 301 --------------------------------------------~~~~--~d~viiV~~p~~~s~~~~~~~~~~l~~~~~ 334 (370)
.+.. .+.+++|++|+..++.+++++++.+++.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~gi 251 (324)
T 3zq6_A 172 IRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYSI 251 (324)
T ss_dssp HHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCCC
Confidence 0111 258999999999999999999999999999
Q ss_pred CeEEEEEcCCccC---C--CCccccccCCChHHHHHhHcC
Q 017486 335 PCIAVVENMCHFD---A--DGKRYYPFGRGSGSQVCTLSN 369 (370)
Q Consensus 335 ~~~gvV~N~v~~~---~--~~~~~~~~g~~~~~~~a~~~~ 369 (370)
++.|+|+||+.+. | ++.++..|+ .+.+++++.|+
T Consensus 252 ~v~gvV~N~~~~~~~~~~~~~~~~~~~~-~~l~~i~~~~~ 290 (324)
T 3zq6_A 252 HADGVIVNQVLPEESDCEFCNARRKLQQ-ERLKQIREKFS 290 (324)
T ss_dssp CEEEEEEEEECCSCCCSHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred CccEEEEcCCccccCCChHHHHHHHHHH-HHHHHHHHHcC
Confidence 9999999999986 2 344556665 57788888775
No 17
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.90 E-value=1.1e-23 Score=187.14 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=108.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
||+|+|+|+|||+||||+|+|||..|+++|+||++||+|++++. ..+++. ...++++++.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~-~~~~~~-----------------~~~~~~~~~~~~ 62 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSL-TNWSKA-----------------GKAAFDVFTAAS 62 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHH-HHHHTT-----------------SCCSSEEEECCS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCH-HHHHhc-----------------CCCCCcEEecCc
Confidence 57999999999999999999999999999999999999987643 333221 112477777542
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcC
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (370)
..+.++++.+. +.|||||||+||+.+...... +..+|.+++|+.++..+ ..+.++++.+++.
T Consensus 63 --------------~~l~~~l~~l~-~~yD~viiD~~~~~~~~~~~~--l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~ 124 (206)
T 4dzz_A 63 --------------EKDVYGIRKDL-ADYDFAIVDGAGSLSVITSAA--VMVSDLVIIPVTPSPLD-FSAAGSVVTVLEA 124 (206)
T ss_dssp --------------HHHHHTHHHHT-TTSSEEEEECCSSSSHHHHHH--HHHCSEEEEEECSCTTT-HHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHhc-CCCCEEEEECCCCCCHHHHHH--HHHCCEEEEEecCCHHH-HHHHHHHHHHHHH
Confidence 23455555554 679999999999997655444 45579999999999999 9999999999876
Q ss_pred C-----CCeEEEEEcCCccC
Q 017486 333 K-----VPCIAVVENMCHFD 347 (370)
Q Consensus 333 ~-----~~~~gvV~N~v~~~ 347 (370)
+ .++ ++|+||++..
T Consensus 125 ~~~~~~~~~-~vv~N~~~~~ 143 (206)
T 4dzz_A 125 QAYSRKVEA-RFLITRKIEM 143 (206)
T ss_dssp SCGGGCCEE-EEEECSBCTT
T ss_pred HHhCCCCcE-EEEEeccCCC
Confidence 4 344 9999999864
No 18
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.90 E-value=4.4e-24 Score=201.32 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=125.5
Q ss_pred CCCeEEEEEe--CCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCC---CCcCCCCccc---cc---ccCCCCCceee
Q 017486 171 KISNIVAVSS--CKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS---LPTMVSPENR---LL---EMNPEKRTIIP 239 (370)
Q Consensus 171 ~~~kvI~v~S--~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~s---l~~~l~~~~~---~~---~~~~~~~~i~~ 239 (370)
.+.++|+|++ +|||+||||+|+|||.+||++|+||++||+|++++. +...++.+.. +. ........+.+
T Consensus 32 ~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 111 (298)
T 2oze_A 32 NKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVH 111 (298)
T ss_dssp HHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEE
T ss_pred CCCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcc
Confidence 3457899998 899999999999999999999999999999999864 2233443311 10 01112223333
Q ss_pred cccCCeeEEecCCCCcccc-cc---CCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC
Q 017486 240 TEYLGVKLVSFGFSGQGRA-IM---RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ 315 (370)
Q Consensus 240 ~~~~~l~vl~~g~~~~~~~-~~---~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~ 315 (370)
. .+|++++|.+....... +. ..+.....+.++++.++ ++||||||||||+.+...... +..+|.+++|+.++
T Consensus 112 ~-~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~~~~~~--l~~aD~viiv~~~~ 187 (298)
T 2oze_A 112 L-TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSVYTNNA--IVASDYVMIPLQAE 187 (298)
T ss_dssp S-SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSHHHHHH--HHHCSEEEEEECGG
T ss_pred c-CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccHHHHHH--HHHCCeEEEEecCc
Confidence 3 47999999775422111 11 11122345777887775 789999999999998655443 44679999999999
Q ss_pred cchHHHHHHHHHHHHc------CCCCeEEEEEcCCccCC
Q 017486 316 KLAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDA 348 (370)
Q Consensus 316 ~~s~~~~~~~~~~l~~------~~~~~~gvV~N~v~~~~ 348 (370)
..++..+.++++.+++ .+.+++|+|+||++.+.
T Consensus 188 ~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 188 EESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 9999999999888876 36788999999998643
No 19
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.90 E-value=5.7e-24 Score=197.40 Aligned_cols=170 Identities=21% Similarity=0.183 Sum_probs=115.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc------cccc---CCCCCceeecccC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEM---NPEKRTIIPTEYL 243 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~------~~~~---~~~~~~i~~~~~~ 243 (370)
|++|+| |+|||+||||+|+|||.+||++|+||++||+|++++++..+++.... +... ....+ +.....+
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~i~~~~~ 78 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDS-ILKEGYG 78 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHH-HCEECGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHH-hhccCCC
Confidence 479999 68999999999999999999999999999999999888776654321 1110 01111 2234567
Q ss_pred CeeEEecCCCCccccccCCchHH--HHHHHHHHhcCCCCCcEEEEcCCCCCChHHHH-HhhHhCCCeEEEEecCCcchHH
Q 017486 244 GVKLVSFGFSGQGRAIMRGPMVS--GVINQLLTTTEWGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLAFI 320 (370)
Q Consensus 244 ~l~vl~~g~~~~~~~~~~~~~~~--~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~-~~~~~~~d~viiV~~p~~~s~~ 320 (370)
|++++|.+......... ..... ..+.+.+..+ .++||||||||||+.....+. ......+|.+++|++++..++.
T Consensus 79 ~l~vl~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l-~~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 79 GIRCVESGGPEPGVGCA-GRGIITSINMLEQLGAY-TDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp GCEEEECCCCCTTSSCH-HHHHHHHHHHHHHTTCC-CTTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHH
T ss_pred CeeEEeCCCchhhcccc-CcchhhHHHHHHHHHhh-ccCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHH
Confidence 99999987543221110 00110 0111222222 267999999999876432221 1111357999999999999999
Q ss_pred HHHHHHHHHHcC----CCCeEEEEEcCCcc
Q 017486 321 DVAKGVRMFSKL----KVPCIAVVENMCHF 346 (370)
Q Consensus 321 ~~~~~~~~l~~~----~~~~~gvV~N~v~~ 346 (370)
.+.++++.+++. +.+++|+|+||++.
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 999888888753 56788999999864
No 20
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.90 E-value=1e-23 Score=198.16 Aligned_cols=169 Identities=22% Similarity=0.198 Sum_probs=115.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--c---cccC-----CCCCceeeccc
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--L---LEMN-----PEKRTIIPTEY 242 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~---~~~~-----~~~~~i~~~~~ 242 (370)
|++|+| |+|||+||||+|+|||.+||++|+||++||+|++++++.++++.... + .... .....+.....
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~ 80 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGY 80 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEECG
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccCC
Confidence 579999 68999999999999999999999999999999999888777654321 1 1110 01111223446
Q ss_pred CCeeEEecCCCCccccccCCchHHHH--HHHHHHhcC--CCCCcEEEEcCCCCCChHHHH-HhhHhCCCeEEEEecCCcc
Q 017486 243 LGVKLVSFGFSGQGRAIMRGPMVSGV--INQLLTTTE--WGELDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKL 317 (370)
Q Consensus 243 ~~l~vl~~g~~~~~~~~~~~~~~~~~--l~~ll~~~~--~~~yD~VIIDtpp~~~~~~l~-~~~~~~~d~viiV~~p~~~ 317 (370)
.|++++|.+....... ...... ..++++.+. .++||||||||||......+. ......+|.+++|++++..
T Consensus 81 ~~l~~l~~~~~~~~~~----~~~~~~~~~~~l~~~l~~l~~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~ 156 (289)
T 2afh_E 81 GGVKCVESGGPEPGVG----CAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMM 156 (289)
T ss_dssp GGCEEEECCCCCTTTC----CHHHHHHHHHHHHHHTTCSSTTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHH
T ss_pred CCeEEEeCCCcccccc----ccchhhhHHHHHHHHHHhhccCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHH
Confidence 7999999775422111 111111 112333331 268999999999865422111 1112357999999999999
Q ss_pred hHHHHHHHHHHHHc----CCCCeEEEEEcCCcc
Q 017486 318 AFIDVAKGVRMFSK----LKVPCIAVVENMCHF 346 (370)
Q Consensus 318 s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~ 346 (370)
++..+.++++.+++ .+.+++|+|+||++.
T Consensus 157 s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 99999888887765 367789999999864
No 21
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.89 E-value=7e-24 Score=208.30 Aligned_cols=173 Identities=16% Similarity=0.234 Sum_probs=119.2
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHh------CCCcEEEeeCCCCCCCCCcCCCCcccc-----------ccc---
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVYGPSLPTMVSPENRL-----------LEM--- 230 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~------~G~rVllID~D~~~~sl~~~l~~~~~~-----------~~~--- 230 (370)
.++++|+|+|+|||+||||+|+|||.+||+ .|+||++||+|+++ +++.+|+..... ...
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 184 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNVSR 184 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCCCH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhccc
Confidence 357899999999999999999999999994 69999999999975 688888764321 000
Q ss_pred -CCCCCceeecccCCeeEEecCCCCccc----------cccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHH
Q 017486 231 -NPEKRTIIPTEYLGVKLVSFGFSGQGR----------AIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 299 (370)
Q Consensus 231 -~~~~~~i~~~~~~~l~vl~~g~~~~~~----------~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~ 299 (370)
....+.+.+...+|++++|.+...... ...........++++++.+. ++||||||||||+++......
T Consensus 185 ~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~~~~~~ 263 (398)
T 3ez2_A 185 EELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDAFLKNA 263 (398)
T ss_dssp HHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSHHHHHH
T ss_pred cccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccHHHHHH
Confidence 011234556667899999987642100 00011112234455555554 789999999999998765554
Q ss_pred hhHhCCCeEEEEecCCcchHHHHH-------HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 300 CQVVPLTAAVIVTTPQKLAFIDVA-------KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 300 ~~~~~~d~viiV~~p~~~s~~~~~-------~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
+..+|.+++|++|+..++..+. ++++.+++. +.++.|+|.|+.+..
T Consensus 264 --l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~ 318 (398)
T 3ez2_A 264 --LASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLS 318 (398)
T ss_dssp --HHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEEC
T ss_pred --HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCC
Confidence 5567999999999988655443 344445544 456677777776653
No 22
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.88 E-value=1.4e-23 Score=206.43 Aligned_cols=170 Identities=19% Similarity=0.225 Sum_probs=106.6
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHH------hCCCcEEEeeCCCCCCCCCcCCCCccccc-----------c----
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLA------GMGARVGIFDADVYGPSLPTMVSPENRLL-----------E---- 229 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA------~~G~rVllID~D~~~~sl~~~l~~~~~~~-----------~---- 229 (370)
..+++|+|+|+|||+||||+|+|||.+|| +.|+||++||+|+++ +++.+|+...... .
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~~~~ 187 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNNLDA 187 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHTCCH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhcccc
Confidence 46789999999999999999999999999 679999999999976 7888888654211 0
Q ss_pred cCCCCCceeecccCCeeEEecCCCCccc---------cccCC-chHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHH
Q 017486 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGR---------AIMRG-PMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTL 299 (370)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~g~~~~~~---------~~~~~-~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~ 299 (370)
.....+.+.+...+|++++|.+...... ..+.+ ......++++++.+. ++||||||||||+++......
T Consensus 188 ~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~~~~~~a 266 (403)
T 3ez9_A 188 ETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLDPFLLNG 266 (403)
T ss_dssp HHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCSHHHHHH
T ss_pred cccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCccHHHHHH
Confidence 0012345566667899999988652100 00111 112234456666664 789999999999998554443
Q ss_pred hhHhCCCeEEEEecCCcchHHHH-------HHHHHHHHcC--CCCeEEEEEcCC
Q 017486 300 CQVVPLTAAVIVTTPQKLAFIDV-------AKGVRMFSKL--KVPCIAVVENMC 344 (370)
Q Consensus 300 ~~~~~~d~viiV~~p~~~s~~~~-------~~~~~~l~~~--~~~~~gvV~N~v 344 (370)
+..+|.+++|++|+..++..+ .++++.+++. +.++.|++.|+.
T Consensus 267 --l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~ 318 (403)
T 3ez9_A 267 --LAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMS 318 (403)
T ss_dssp --HHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEEC
T ss_pred --HHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEe
Confidence 557799999999998866544 3444555544 445556544443
No 23
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.88 E-value=9.1e-24 Score=204.34 Aligned_cols=176 Identities=15% Similarity=0.132 Sum_probs=115.5
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHH--hCCCcEEEeeCCCCCCCCCcCCCCccccc--ccCCCCCc----eeec--
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENRLL--EMNPEKRT----IIPT-- 240 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA--~~G~rVllID~D~~~~sl~~~l~~~~~~~--~~~~~~~~----i~~~-- 240 (370)
+..++|+|+|+||||||||+|+|||.+|| +.|+||++||+|++ ++++.+||.+.... ........ +.+.
T Consensus 15 ~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~ 93 (354)
T 2woj_A 15 STTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAA 93 (354)
T ss_dssp CSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHHH
Confidence 44579999999999999999999999999 99999999999995 89998888653200 00000000 0000
Q ss_pred ---c----------------cCCeeEEecCCCCccc-cccCCchHHHHHHHHHHhcCCC------CCcEEEEcCCC-CCC
Q 017486 241 ---E----------------YLGVKLVSFGFSGQGR-AIMRGPMVSGVINQLLTTTEWG------ELDYLVIDMPP-GTG 293 (370)
Q Consensus 241 ---~----------------~~~l~vl~~g~~~~~~-~~~~~~~~~~~l~~ll~~~~~~------~yD~VIIDtpp-~~~ 293 (370)
. ..++++++.+...... ..+.+......+.++++.+++. +|||||||||| |..
T Consensus 94 l~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~t 173 (354)
T 2woj_A 94 LKDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHT 173 (354)
T ss_dssp HHHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHHH
T ss_pred HHHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchHH
Confidence 0 0145555432111110 1233333345666666665432 79999999999 430
Q ss_pred -------hH--------------HHHHh--------------------------hHh---CCCeEEEEecCCcchHHHHH
Q 017486 294 -------DI--------------QLTLC--------------------------QVV---PLTAAVIVTTPQKLAFIDVA 323 (370)
Q Consensus 294 -------~~--------------~l~~~--------------------------~~~---~~d~viiV~~p~~~s~~~~~ 323 (370)
+. ...+. ..+ .+|.+++|++|+.+++.++.
T Consensus 174 LrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea~ 253 (354)
T 2woj_A 174 LRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETE 253 (354)
T ss_dssp HHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHHH
Confidence 00 00000 000 46889999999999999999
Q ss_pred HHHHHHHcCCCCeEEEEEcCCc-cC
Q 017486 324 KGVRMFSKLKVPCIAVVENMCH-FD 347 (370)
Q Consensus 324 ~~~~~l~~~~~~~~gvV~N~v~-~~ 347 (370)
++++.|++.++++.|+|+||+. +.
T Consensus 254 r~~~~L~~~g~~~~gvVvN~v~~~~ 278 (354)
T 2woj_A 254 RLIQELISYDMDVNSIIVNQLLFAE 278 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECCCC
T ss_pred HHHHHHHHcCCCCCEEEEecCCCcc
Confidence 9999999999999999999998 53
No 24
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.87 E-value=9.6e-23 Score=198.62 Aligned_cols=166 Identities=20% Similarity=0.233 Sum_probs=119.7
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccc------cccC--------CCCCc
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRL------LEMN--------PEKRT 236 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~------~~~~--------~~~~~ 236 (370)
+.+++|+|+|+|||+||||+|+|||.+||++|+||++||+| ..++++.+||.+... .... ...+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~~ 219 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLESC 219 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHHT
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHHH
Confidence 45789999999999999999999999999999999999999 777898888865431 1100 01122
Q ss_pred eeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc
Q 017486 237 IIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK 316 (370)
Q Consensus 237 i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~ 316 (370)
+.+ ...|++++|.+........+........++.+.. ++.||||||||||+.+.....+ +..+|.+++|++|+.
T Consensus 220 i~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~ll~~l~~---~~~yD~VIID~p~~~~~~~~~~--l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 220 IKQ-SQEGVSYFSSTKVALDILEISYADIDTLIGNIQG---MDNYDEIIVDLPFSLEIEKLKL--LSKAWRIIVVNDGSQ 293 (373)
T ss_dssp CEE-CTTSCEECCCCSSGGGGGGCCHHHHHHHHHHHHH---TSCCSEEEEECCCCCCHHHHHH--HTTCSEEEEEECCCH
T ss_pred hhc-CCCCEEEecCCCChHhHHhCCHHHHHHHHHHHHh---cCCCCEEEEeCCCCCCHHHHHH--HHHCCEEEEEecCCc
Confidence 222 3379999998765544444444555555555542 3689999999999998765555 556799999999999
Q ss_pred ch---HHHHHHHHHHHHcCCCCeEEEEEcCCc
Q 017486 317 LA---FIDVAKGVRMFSKLKVPCIAVVENMCH 345 (370)
Q Consensus 317 ~s---~~~~~~~~~~l~~~~~~~~gvV~N~v~ 345 (370)
.+ +.++.+.++.+.+. .+ +++|.||+.
T Consensus 294 ~s~~~l~~~~~~l~~l~~~-~~-~~vv~N~~~ 323 (373)
T 3fkq_A 294 LSNYKFMRAYESVVLLEQN-DD-INIIRNMNM 323 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TT-CCCGGGEEE
T ss_pred hHHHHHHHHHHHHHHhccc-CC-cEEEehhHH
Confidence 88 55555555555542 22 566666653
No 25
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.87 E-value=4.1e-22 Score=191.05 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=110.1
Q ss_pred cCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEe
Q 017486 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (370)
Q Consensus 170 ~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~ 249 (370)
.+.+++|.|+|+|||+||||+|+|||.++|+.|+||++||+|++. ++..+|+......... ....++++.+.
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~-~l~~~l~~~~~~~~~~-------v~~~~~L~~~~ 83 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH-NLSDAFSQKFGKEARL-------VEGFDNLYAME 83 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC-HHHHHHTSCCCSSCEE-------CTTCSSEEEEE
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC-ChhHHhccccCCCcee-------ecCCCCceeee
Confidence 344567889999999999999999999999999999999999754 7777776432100000 00001111111
Q ss_pred cC------------------------CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH-HHh----
Q 017486 250 FG------------------------FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL-TLC---- 300 (370)
Q Consensus 250 ~g------------------------~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l-~~~---- 300 (370)
.. ........+.+......+.++.+.+.+.+||||||||||......+ .+.
T Consensus 84 id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~lp~~l~ 163 (334)
T 3iqw_A 84 IDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLE 163 (334)
T ss_dssp CCC--------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHHHTHHHHC-
T ss_pred cCHHHHHHHHHHHhhcccccccccchhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 00 0000001223333334455555555568999999999993211000 000
Q ss_pred ----------------------------------------------------hHh--CCCeEEEEecCCcchHHHHHHHH
Q 017486 301 ----------------------------------------------------QVV--PLTAAVIVTTPQKLAFIDVAKGV 326 (370)
Q Consensus 301 ----------------------------------------------------~~~--~~d~viiV~~p~~~s~~~~~~~~ 326 (370)
.+. ..+.+++|++|+..++.++++++
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~ 243 (334)
T 3iqw_A 164 KALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMI 243 (334)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHH
Confidence 000 13579999999999999999999
Q ss_pred HHHHcCCCCeEEEEEcCCcc
Q 017486 327 RMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 327 ~~l~~~~~~~~gvV~N~v~~ 346 (370)
+.|++.|+++.|+|+||+.+
T Consensus 244 ~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 244 QELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp HHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHCCCCccEEEECCCcC
Confidence 99999999999999999984
No 26
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.87 E-value=1.8e-22 Score=193.39 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=113.9
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccccc--ccCCCCCcee----ec-----
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL--EMNPEKRTII----PT----- 240 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~--~~~~~~~~i~----~~----- 240 (370)
..++|+|+|+||||||||+|+|||.+||+.|+||++||+|++ ++++.+|+...... .......... +.
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~ 95 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQE 95 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCSSEEEEECCHHHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCCCeeEEecCHHHHHHH
Confidence 357899999999999999999999999999999999999998 78888877642100 0000000000 00
Q ss_pred ccCC-----ee-EEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCC-CCC------hHHH----------
Q 017486 241 EYLG-----VK-LVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPP-GTG------DIQL---------- 297 (370)
Q Consensus 241 ~~~~-----l~-vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp-~~~------~~~l---------- 297 (370)
...+ ++ +++... ..-...+.++.....++++.+.+.|++|||||||||| |.. ...+
T Consensus 96 ~~~~~~~~~l~~~l~~~l-~~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~l~~~ 174 (329)
T 2woo_A 96 MTEQADQQNPNNPLSGMM-QDLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGL 174 (329)
T ss_dssp HHHTC--------CCHHH-HHHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSSSCTTTGGGHHHHHHHHHHHHHTS
T ss_pred HHHHHhhhhHHHHhhHHH-HHHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 11 111000 0001123444444566677776666799999999999 332 0000
Q ss_pred --------H-Hhh---------------------------Hh---CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEE
Q 017486 298 --------T-LCQ---------------------------VV---PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIA 338 (370)
Q Consensus 298 --------~-~~~---------------------------~~---~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~g 338 (370)
. +.. .. ..+.+++|++|+..++.++.++++.+++.++++.|
T Consensus 175 ~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~g 254 (329)
T 2woo_A 175 SSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEIDTHN 254 (329)
T ss_dssp CSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCE
Confidence 0 000 00 12479999999999999999999999999999999
Q ss_pred EEEcCCcc
Q 017486 339 VVENMCHF 346 (370)
Q Consensus 339 vV~N~v~~ 346 (370)
+|+||+.+
T Consensus 255 vVvN~~~~ 262 (329)
T 2woo_A 255 IVVNQLLL 262 (329)
T ss_dssp EEEEEECC
T ss_pred EEEeCCcC
Confidence 99999984
No 27
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.86 E-value=3.9e-23 Score=194.16 Aligned_cols=164 Identities=20% Similarity=0.160 Sum_probs=111.9
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCe-eEEec
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGV-KLVSF 250 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l-~vl~~ 250 (370)
|+++|+|+|+|||+||||+|+|||.+|++.|+||++||+|++++++..+++....+.... .. ....++ +++|.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~~~~~~--~~----~~~~~l~~vl~~ 76 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRAWLDNK--KI----ELPEPLALNLSD 76 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHHH--TC----CCCCCEEECSSS
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChhHhHhc--cc----cCCCchheEeeC
Confidence 678999999999999999999999999999999999999996678877776543211100 00 012356 67764
Q ss_pred CC--CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHH
Q 017486 251 GF--SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRM 328 (370)
Q Consensus 251 g~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~ 328 (370)
+. ....... .....+.++++.++ +.||||||||||+.+...... +..+|.+++|+.++..++..+.++++.
T Consensus 77 ~~~~~~~~~~~----~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~ 149 (286)
T 2xj4_A 77 NDVALAERPEE----EQVAGFEAAFARAM-AECDFILIDTPGGDSAITRMA--HGRADLVVTPMNDSFVDFDMLGTVDPV 149 (286)
T ss_dssp CHHHHTTSCHH----HHHHHHHHHHHHHH-HHCSEEEEECCSSCCHHHHHH--HHTCSEEEEEEESSHHHHTTTEEECTT
T ss_pred CCCCCcChhhh----hhHHHHHHHHHHHH-hcCCEEEEcCCCCccHHHHHH--HHHCCEEEEEEcCCccHHHHHHHHHHH
Confidence 21 1111111 12334555555554 789999999999987554433 567799999999999888776554444
Q ss_pred -------------H---Hc---C--C-C-CeEEEEEcCCccCC
Q 017486 329 -------------F---SK---L--K-V-PCIAVVENMCHFDA 348 (370)
Q Consensus 329 -------------l---~~---~--~-~-~~~gvV~N~v~~~~ 348 (370)
+ ++ . + . ..+++|+||++...
T Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N~~~~~~ 192 (286)
T 2xj4_A 150 TLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATTE 192 (286)
T ss_dssp TCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEECCTTCC
T ss_pred hhhccccchhhhhhhcchhhhhhccCCccccEEEEEeeecCCC
Confidence 3 21 1 2 1 23679999998643
No 28
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.85 E-value=1.9e-21 Score=174.47 Aligned_cols=132 Identities=25% Similarity=0.253 Sum_probs=102.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFS 253 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~~ 253 (370)
++|+|+|+|||+||||+|+|||.+|+++| ||++||+|++++ +..+++. . + .+ .++++..
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~-~~~~~~~-~---------~--l~-----~~vi~~~-- 59 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRS-ATGWGKR-G---------S--LP-----FKVVDER-- 59 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCH-HHHHHHH-S---------C--CS-----SEEEEGG--
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCC-HHHHhcC-C---------C--CC-----cceeCHH--
Confidence 48999999999999999999999999999 999999999863 3333322 0 0 01 1444411
Q ss_pred CccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCC-CChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcC
Q 017486 254 GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPG-TGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL 332 (370)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~-~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~ 332 (370)
.++.+ ++.||||||||||+ .+...... +..+|.+++|+.++..++..+.++++.+++.
T Consensus 60 --------------~l~~l-----~~~yD~viiD~p~~~~~~~~~~~--l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~ 118 (209)
T 3cwq_A 60 --------------QAAKY-----APKYQNIVIDTQARPEDEDLEAL--ADGCDLLVIPSTPDALALDALMLTIETLQKL 118 (209)
T ss_dssp --------------GHHHH-----GGGCSEEEEEEECCCSSSHHHHH--HHTSSEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred --------------HHHHh-----hhcCCEEEEeCCCCcCcHHHHHH--HHHCCEEEEEecCCchhHHHHHHHHHHHHhc
Confidence 34444 27899999999999 76554433 5567999999999999999999999999885
Q ss_pred -CCCeEEEEEcCCccCC
Q 017486 333 -KVPCIAVVENMCHFDA 348 (370)
Q Consensus 333 -~~~~~gvV~N~v~~~~ 348 (370)
+.+ +++|+||++...
T Consensus 119 ~~~~-~~vv~N~~~~~~ 134 (209)
T 3cwq_A 119 GNNR-FRILLTIIPPYP 134 (209)
T ss_dssp CSSS-EEEEECSBCCTT
T ss_pred cCCC-EEEEEEecCCcc
Confidence 555 889999998753
No 29
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.85 E-value=3e-22 Score=192.96 Aligned_cols=174 Identities=17% Similarity=0.164 Sum_probs=99.4
Q ss_pred cCCCeEEEEEeCCCCChHHHHHHHHHHHHH--hCCCcEEEeeCCCCCCCCCcCCCCccc-----------ccccCCCCCc
Q 017486 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVYGPSLPTMVSPENR-----------LLEMNPEKRT 236 (370)
Q Consensus 170 ~~~~kvI~v~S~kGGvGKTTla~nLA~~LA--~~G~rVllID~D~~~~sl~~~l~~~~~-----------~~~~~~~~~~ 236 (370)
....+.|+|+|+|||+||||+|+|||.++| +.|+||++||+|+ +++++.+|+.+.. +.........
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~-~~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~ 92 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP-AHNLSDAFCQKFGKDARKVEGLPNLSCMEIDPEA 92 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS-SCHHHHHHTSCCCSSCEEETTEEEEEEEECCC--
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC-CCChHHHhccccCCCceeccCCCCceEEeeCHHH
Confidence 344557788889999999999999999999 8999999999996 5678877775311 0000000000
Q ss_pred eeeccc-----------CCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCC------------CCcEEEEcCCCCCC
Q 017486 237 IIPTEY-----------LGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWG------------ELDYLVIDMPPGTG 293 (370)
Q Consensus 237 i~~~~~-----------~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~------------~yD~VIIDtpp~~~ 293 (370)
...... .++..+. ......+.+......+.++++.+.+. +||+|||||||...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~ 168 (348)
T 3io3_A 93 AMSDLQQQASQYNNDPNDPLKSMM----SDMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGH 168 (348)
T ss_dssp -------------------------------------------------------------------CCEEEEECSSHHH
T ss_pred HHHHHHHHHHhhcccccccHhHHh----HHhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchH
Confidence 000000 0011110 00001112222223455555555433 89999999999321
Q ss_pred hHHH-HH------------------------------------------------hhH--hCCCeEEEEecCCcchHHHH
Q 017486 294 DIQL-TL------------------------------------------------CQV--VPLTAAVIVTTPQKLAFIDV 322 (370)
Q Consensus 294 ~~~l-~~------------------------------------------------~~~--~~~d~viiV~~p~~~s~~~~ 322 (370)
...+ .+ ..+ ...+.+++|++|+..++.++
T Consensus 169 tLrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea 248 (348)
T 3io3_A 169 TLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYET 248 (348)
T ss_dssp HHHHTC---------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHH
Confidence 1100 00 000 01368999999999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 323 AKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 323 ~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+++++.+++.++++.|+|+||+.+..
T Consensus 249 ~r~~~~L~~~gi~v~gvVvN~~~~~~ 274 (348)
T 3io3_A 249 ERMIQELMSYNMDVNSIVVNQLLFAE 274 (348)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred HHHHHHHHHCCCCccEEEEcCCcccc
Confidence 99999999999999999999999744
No 30
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.79 E-value=5.6e-19 Score=159.13 Aligned_cols=168 Identities=13% Similarity=0.028 Sum_probs=100.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcC-CCCcc---cccccCCCCCceeecccCCeeEEe
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPEN---RLLEMNPEKRTIIPTEYLGVKLVS 249 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~-l~~~~---~~~~~~~~~~~i~~~~~~~l~vl~ 249 (370)
|+|+|+|.|||+||||+|+|||.+|+++|+||+++|. +....... .+... ........... .....+..+++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp--~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~ 77 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP--VASGSEKTPEGLRNSDALALQRNSSLQL--DYATVNPYTFA 77 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS--EEESCBCCTTSCBCHHHHHHHHTCSSCC--CHHHHCSEEES
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc--eecCCccCCCCcChHHHHHHHHHhCCCC--ChhhcccEEeC
Confidence 6899999999999999999999999999999999863 33211110 00000 00000000000 00000112222
Q ss_pred cCCCCcccccc-CCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH------HHHHhhHhCCCeEEEEecCCcchHHHH
Q 017486 250 FGFSGQGRAIM-RGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI------QLTLCQVVPLTAAVIVTTPQKLAFIDV 322 (370)
Q Consensus 250 ~g~~~~~~~~~-~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~------~l~~~~~~~~d~viiV~~p~~~s~~~~ 322 (370)
.+........+ ........+.+.++.+. ++||||||||||+++.. ...++... .+.+++|+.++..++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~-~~~vi~v~~~~~~~~~~~ 155 (224)
T 1byi_A 78 EPTSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQE-QLPVILVVGVKLGCINHA 155 (224)
T ss_dssp SCSCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHH-TCCEEEEEECSTTHHHHH
T ss_pred CCCCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHh-CCCEEEEecCCCCcHHHH
Confidence 11110000000 00112344555555554 78999999999988631 11111111 145899999999999999
Q ss_pred HHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 323 AKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 323 ~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.+.++.+++.+.+++|+|+||++.+
T Consensus 156 ~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 156 MLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred HHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 9999999988999999999999864
No 31
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.74 E-value=1.1e-17 Score=162.33 Aligned_cols=159 Identities=20% Similarity=0.231 Sum_probs=104.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEe----
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS---- 249 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~---- 249 (370)
+.|.++|+|||+||||+|+|||.++|+.|+||++||+ + +++++.+|+....-. ...+ .++++.+.
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~-~~~l~~~~~~~~~~~-----~~~v----~~~L~~~eid~~ 70 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-A-EPVLPLLLEQTLTPD-----PQQI----APNLEVVQFQSS 70 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-S-CSHHHHHHTSCCCSS-----CEEE----ETTEEEEECCHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-C-CCChHHhhCCCCCCC-----cccc----cccccccccCHH
Confidence 3567788999999999999999999999999999999 4 668888877542100 0000 11222221
Q ss_pred -------------------cC-C--C-CccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHH---------
Q 017486 250 -------------------FG-F--S-GQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQL--------- 297 (370)
Q Consensus 250 -------------------~g-~--~-~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l--------- 297 (370)
.. . . ......+.+......+.++.+...+.+||||||||||......+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~ 150 (374)
T 3igf_A 71 VLLERNWEEVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSW 150 (374)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHH
Confidence 00 0 0 01111223333333444555444457899999999994210000
Q ss_pred --H--------------H-------------------------------------hh-Hh-C-CCeEEEEecCCcchHHH
Q 017486 298 --T--------------L-------------------------------------CQ-VV-P-LTAAVIVTTPQKLAFID 321 (370)
Q Consensus 298 --~--------------~-------------------------------------~~-~~-~-~d~viiV~~p~~~s~~~ 321 (370)
. . .. +. + ...+++|++|+..++.+
T Consensus 151 ~l~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~e 230 (374)
T 3igf_A 151 YVRRFRQLFVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVS 230 (374)
T ss_dssp HHHHTTSCC-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHH
Confidence 0 0 00 00 1 25789999999999999
Q ss_pred HHHHHHHHHcCCCCeEEEEEcC
Q 017486 322 VAKGVRMFSKLKVPCIAVVENM 343 (370)
Q Consensus 322 ~~~~~~~l~~~~~~~~gvV~N~ 343 (370)
+.++++.+.+.|+++.|+|+||
T Consensus 231 a~r~~~~L~~~gi~v~gvVvN~ 252 (374)
T 3igf_A 231 VRYLWGSAQQIGLTIGGVIQVS 252 (374)
T ss_dssp HHHHHHHHHHHTCCEEEEEECC
T ss_pred HHHHHHHHHHcCCCccEEEEcC
Confidence 9999999999999999999999
No 32
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.74 E-value=2.4e-18 Score=177.13 Aligned_cols=165 Identities=20% Similarity=0.176 Sum_probs=108.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC-
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF- 252 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~- 252 (370)
+.|.|+|+|||+||||+|+|||.++|++|+||++||+|++ ++++..|+.+..... ..-....++..+....
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l~~~l~~~~~~~~-------~~v~~~~~l~~~~~d~~ 79 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTI-------QAIASVPGLSALEIDPQ 79 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTSCCCSSC-------EECTTSTTEEEEECCHH
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCHHHHhCCcccCCC-------ceeccchhhhhccCCHH
Confidence 3456888999999999999999999999999999999995 899888886532100 0000112222222110
Q ss_pred -----------------CCcc-----ccccCCch-----HHHHHHHHHH--hcCCCCCcEEEEcCCCCCChHHHH-----
Q 017486 253 -----------------SGQG-----RAIMRGPM-----VSGVINQLLT--TTEWGELDYLVIDMPPGTGDIQLT----- 298 (370)
Q Consensus 253 -----------------~~~~-----~~~~~~~~-----~~~~l~~ll~--~~~~~~yD~VIIDtpp~~~~~~l~----- 298 (370)
.... ...+.++. ....+.++++ .+. ++||+|||||||......+.
T Consensus 80 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~-~~yD~VIiDt~P~~~~lrll~lP~~ 158 (589)
T 1ihu_A 80 AAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL-TRFDHIIFDTAPTGHTIRLLQLPGA 158 (589)
T ss_dssp HHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH-HHCSEEEESSCCCHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc-ccCCEEEECCCCchhHHHHHHhHHH
Confidence 0000 00011110 1234555555 322 67999999999953211100
Q ss_pred ------------------------------Hh-hHh--CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCc
Q 017486 299 ------------------------------LC-QVV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCH 345 (370)
Q Consensus 299 ------------------------------~~-~~~--~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~ 345 (370)
.. .+. ..+.+++|++|+..++.++.++++.+++.++++.|+|+|++.
T Consensus 159 ~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 159 WSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp GTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred HHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
Confidence 00 011 123699999999999999999999999999999999999998
Q ss_pred cC
Q 017486 346 FD 347 (370)
Q Consensus 346 ~~ 347 (370)
+.
T Consensus 239 ~~ 240 (589)
T 1ihu_A 239 PK 240 (589)
T ss_dssp CG
T ss_pred Cc
Confidence 75
No 33
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.72 E-value=3.2e-18 Score=176.18 Aligned_cols=174 Identities=19% Similarity=0.181 Sum_probs=107.3
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc-cccccCCC--------CCceeecc
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN-RLLEMNPE--------KRTIIPTE 241 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~-~~~~~~~~--------~~~i~~~~ 241 (370)
.+.++|.|+++|||+||||+|+|||..+++.|+||++||+|++ +++...|+... .+...... ...+.+..
T Consensus 324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~-~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 402 (589)
T 1ihu_A 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA-AHLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETK 402 (589)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------CCEEEEECCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc-ccHhHHhcccCCCceeeecchHHHHHHHHHHHHHhh
Confidence 4567999999999999999999999999999999999999998 57777776531 11000000 00011100
Q ss_pred cCCeeEEecCCCCccccccCCchH--HHHHHHHHHhcCCCCCcEEEEcCCCCCC--------------------hHH--H
Q 017486 242 YLGVKLVSFGFSGQGRAIMRGPMV--SGVINQLLTTTEWGELDYLVIDMPPGTG--------------------DIQ--L 297 (370)
Q Consensus 242 ~~~l~vl~~g~~~~~~~~~~~~~~--~~~l~~ll~~~~~~~yD~VIIDtpp~~~--------------------~~~--l 297 (370)
..+++. .+ ...-...+.++.. ...++++.+.+++.+||||||||||+.. +.. .
T Consensus 403 ~~~l~~--~~-~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~ 479 (589)
T 1ihu_A 403 GKELDE--AG-KRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFT 479 (589)
T ss_dssp HTTCCH--HH-HHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------------------
T ss_pred hccCCh--hh-HHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHH
Confidence 011110 00 0000011223322 2355666655545679999999999832 110 0
Q ss_pred HHh-hHh--CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 298 TLC-QVV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 298 ~~~-~~~--~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
... .+. .+|.+++|++|+..++.++.++++.+++.++++.|+|+||+.+.+
T Consensus 480 ~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~ 533 (589)
T 1ihu_A 480 TPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIA 533 (589)
T ss_dssp CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTS
T ss_pred HHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCC
Confidence 000 111 358999999999999999999999999999999999999999864
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.71 E-value=2.5e-19 Score=177.25 Aligned_cols=225 Identities=18% Similarity=0.198 Sum_probs=135.2
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...+++++.+.|++++...+..|| +...+++.++....+..+ .....| .+.+.+.+.+.|..+.+....
T Consensus 20 ~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~l~~~l~~~~~- 91 (433)
T 2xxa_A 20 GRLTEDNVKDTLREVRMALLEADVALPVVREFINRVKEKAVGHEV------NKSLTP-GQEFVKIVRNELVAAMGEENQ- 91 (433)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHSSSCC------CSSSCT-TTTTHHHHHHHHHHHHCSSSC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcccc------cccCCh-HHHHHHHHHHHHHHHhccccc-
Confidence 457899999999999988887776 334566655332211111 111111 233334444444433221110
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCCCCCCCcCCCCccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVYGPSLPTMVSPENRLL 228 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~~~sl~~~l~~~~~~~ 228 (370)
+.. ...+.+++|+|+ ++||+||||++.+||.+|+++ |+||++||+|++++.....+.
T Consensus 92 -------~~~--------~~~~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~------ 149 (433)
T 2xxa_A 92 -------TLN--------LAAQPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE------ 149 (433)
T ss_dssp -------CCC--------CCSSSSEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH------
T ss_pred -------ccc--------ccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH------
Confidence 000 011345789998 799999999999999999998 999999999999875422110
Q ss_pred ccCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--HHHH----HhhH
Q 017486 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQV 302 (370)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~l~----~~~~ 302 (370)
......|+++++.+...+ ....+.+.+..+.+..||||||||||..+. .... ....
T Consensus 150 ---------~~~~~~~l~v~~~~~~~d---------p~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~ 211 (433)
T 2xxa_A 150 ---------TLAEQVGVDFFPSDVGQK---------PVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAS 211 (433)
T ss_dssp ---------HHHHHHTCEECCCCSSSC---------HHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHH
T ss_pred ---------hhcccCCeeEEeCCCCCC---------HHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHh
Confidence 011234788887654211 122234444444346899999999986542 2111 1113
Q ss_pred hCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 303 ~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
...|.+++|+.+... .++....+.+.. ++++.|+|+|+++...
T Consensus 212 ~~p~~vllVvda~~g--~~~~~~~~~f~~-~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 212 INPVETLFVVDAMTG--QDAANTAKAFNE-ALPLTGVVLTKVDGDA 254 (433)
T ss_dssp SCCSEEEEEEETTBC--TTHHHHHHHHHH-HSCCCCEEEECTTSSS
T ss_pred hcCcceeEEeecchh--HHHHHHHHHHhc-cCCCeEEEEecCCCCc
Confidence 356889998877643 333444445543 4677899999998754
No 35
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=99.70 E-value=4.8e-17 Score=129.27 Aligned_cols=86 Identities=36% Similarity=0.596 Sum_probs=81.2
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeEEEee
Q 017486 74 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMS 153 (370)
Q Consensus 74 ~~~~~~v~~~L~~V~dPel~~div~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~V~l~ 153 (370)
|.++++|+++|++|+||+++.||+++|+|++|.++++ ++|.|.|++|+++||..+.|.++++++|.+++|++++++++.
T Consensus 5 m~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~-~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~ 83 (103)
T 1uwd_A 5 KVTKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQ-NNVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT 83 (103)
T ss_dssp CCCHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTT-CEEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred cchHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCC-CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence 4689999999999999999999999999999999854 689999999999999999999999999999999999999999
Q ss_pred cCCCCch
Q 017486 154 AQPARPI 160 (370)
Q Consensus 154 ~~p~~~~ 160 (370)
++|+|..
T Consensus 84 ~~p~W~~ 90 (103)
T 1uwd_A 84 FDPPWTP 90 (103)
T ss_dssp CSSCCCG
T ss_pred cCCCCCh
Confidence 9999943
No 36
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=99.70 E-value=1.5e-17 Score=133.22 Aligned_cols=87 Identities=26% Similarity=0.507 Sum_probs=81.7
Q ss_pred CcccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHh-hcCCCcceeEEE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVV-LAIPWVNKVNVT 151 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~div~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L-~~l~gv~~v~V~ 151 (370)
.+.++++|+++|++|+||+++.|||++|+|++|.++++ ++|.|.|++|+++||..+.|.++++++| .+++|++++.++
T Consensus 6 ~~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~-~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V~ 84 (108)
T 3lno_A 6 QEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADEN-NNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEVN 84 (108)
T ss_dssp HHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTT-CCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEEE
T ss_pred hhhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCC-CeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEEE
Confidence 35688999999999999999999999999999999854 6899999999999999999999999999 999999999999
Q ss_pred eecCCCCch
Q 017486 152 MSAQPARPI 160 (370)
Q Consensus 152 l~~~p~~~~ 160 (370)
+.++|+|..
T Consensus 85 l~~~p~W~~ 93 (108)
T 3lno_A 85 VVWNPPWSK 93 (108)
T ss_dssp ECCSSCCCG
T ss_pred EEecCCCCh
Confidence 999999943
No 37
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=99.69 E-value=8e-17 Score=127.96 Aligned_cols=84 Identities=26% Similarity=0.562 Sum_probs=80.1
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeEEEeec
Q 017486 75 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVNVTMSA 154 (370)
Q Consensus 75 ~~~~~v~~~L~~V~dPel~~div~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~V~l~~ 154 (370)
.++++|+++|++|+||+++.||+++|+|++|.+++ ++|.|.|++|+++||..+.|.++++++|.+++|++++++++.+
T Consensus 6 ~~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~--~~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~~ 83 (103)
T 3cq1_A 6 PLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEP--PRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVTF 83 (103)
T ss_dssp HHHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEET--TEEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEECC
T ss_pred hHHHHHHHHHhCCCCCCCCcCchhcCceEEEEEEC--CEEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEec
Confidence 46889999999999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCCCch
Q 017486 155 QPARPI 160 (370)
Q Consensus 155 ~p~~~~ 160 (370)
+|+|..
T Consensus 84 ~p~W~~ 89 (103)
T 3cq1_A 84 EPPWTL 89 (103)
T ss_dssp SSCCCG
T ss_pred CCCCCh
Confidence 999954
No 38
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.58 E-value=2.8e-15 Score=141.32 Aligned_cols=225 Identities=15% Similarity=0.170 Sum_probs=135.4
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...+++++.+.|++++.-.+..|| +...++++++....+.+ +. ++....+.+.+.+.+.|....+....
T Consensus 18 ~~~~~~~~~~~~~~~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~l~~~~~~~~~- 89 (297)
T 1j8m_F 18 SSSYDKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEK------PP-TYIERREWFIKIVYDELSNLFGGDKE- 89 (297)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC------CC-TTCCHHHHHHHHHHHHHHHHTTCSCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcc------cc-ccCChHHHHHHHHHHHHHHHhccccc-
Confidence 456888888888888887777776 33445555432110010 11 11122455555556656543332110
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~ 229 (370)
+.. .+...+++|+++ +++|+||||++.+||..++..|++|+++|+|++++.....+..
T Consensus 90 ------~~i---------~~~~~~~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~------ 147 (297)
T 1j8m_F 90 ------PKV---------IPDKIPYVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQ------ 147 (297)
T ss_dssp ------CCC---------SCSSSSEEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHH------
T ss_pred ------ccc---------ccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHH------
Confidence 000 011125688887 7999999999999999999999999999999998754321110
Q ss_pred cCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hH-HHH-----Hhh
Q 017486 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DI-QLT-----LCQ 301 (370)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~-~l~-----~~~ 301 (370)
.....++++++.+.. ......+.+.++.++++.||||||||||... .. .+. +..
T Consensus 148 ---------~~~~~~v~v~~~~~~---------~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~ 209 (297)
T 1j8m_F 148 ---------LGQQIGVPVYGEPGE---------KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYE 209 (297)
T ss_dssp ---------HHHHHTCCEECCTTC---------CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHH
T ss_pred ---------HhccCCeEEEecCCC---------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHH
Confidence 011236777764321 1122233445554444789999999999766 21 121 123
Q ss_pred HhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 302 VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 302 ~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
...+|.+++|+.+.. . .+..+..+.+.+ ..++.|+|+|+++...
T Consensus 210 ~~~~d~vllVvda~~-g-~~~~~~~~~~~~-~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 210 AIKPDEVTLVIDASI-G-QKAYDLASKFNQ-ASKIGTIIITKMDGTA 253 (297)
T ss_dssp HHCCSEEEEEEEGGG-G-GGHHHHHHHHHH-TCTTEEEEEECGGGCT
T ss_pred HhcCCEEEEEeeCCc-h-HHHHHHHHHHHh-hCCCCEEEEeCCCCCc
Confidence 456799999988764 2 333344455554 5778999999998753
No 39
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.58 E-value=6.4e-17 Score=159.17 Aligned_cols=223 Identities=18% Similarity=0.163 Sum_probs=137.3
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...+++++.+.|++++...+..|| +...+++.+.....+..+ .....| .+.+.+.+.+.|....+.....
T Consensus 20 ~~~~e~~~~~~l~e~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~------~~~~~~-~~~~~~~v~~~L~~~~~~~~~~ 92 (425)
T 2ffh_A 20 GRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEALGKQV------LESLTP-AEVILATVYEALKEALGGEARL 92 (425)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTG------GGCSCH-HHHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHccccc------cccCCc-HHHHHHHHHHHHHHHhCCCccc
Confidence 457899999999999988887777 335566655432110111 111122 5566666776665543321100
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~ 229 (370)
+ .+. .+++|+++ +++|+||||++.+||.+++..|++|+++|+|++++.....+..
T Consensus 93 i-----------------~l~-~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~------ 147 (425)
T 2ffh_A 93 P-----------------VLK-DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL------ 147 (425)
T ss_dssp C-----------------CCC-SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH------
T ss_pred c-----------------cCC-CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH------
Confidence 1 112 34688888 7899999999999999999999999999999998765322110
Q ss_pred cCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-HH-H----HHhhHh
Q 017486 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-IQ-L----TLCQVV 303 (370)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-~~-l----~~~~~~ 303 (370)
.....|+++++.+...+. ...+.+.++.++++.||+|||||||.... .. + .+....
T Consensus 148 ---------~~~~~gv~v~~~~~~~~p---------~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~ 209 (425)
T 2ffh_A 148 ---------LGEKVGVPVLEVMDGESP---------ESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (425)
T ss_dssp ---------HHHHHTCCEEECCTTCCH---------HHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred ---------hcccCCccEEecCCCCCH---------HHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhcc
Confidence 012247888876542211 12223444443237899999999997642 11 1 112233
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..|.+++|+.+.. . .++....+.+.. .+++.|+|+|+++...
T Consensus 210 ~pd~vlLVvDa~t-g-q~av~~a~~f~~-~l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 210 GPDEVLLVLDAMT-G-QEALSVARAFDE-KVGVTGLVLTKLDGDA 251 (425)
T ss_dssp CCSEEEEEEEGGG-T-THHHHHHHHHHH-HTCCCEEEEESGGGCS
T ss_pred CCceEEEEEeccc-h-HHHHHHHHHHHh-cCCceEEEEeCcCCcc
Confidence 5689999988653 2 333344444443 4667899999998754
No 40
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.56 E-value=1.6e-14 Score=137.57 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=95.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g 251 (370)
.+++|+|++. +|+||||++.+||..++..|++|+++|+|++++.....+. .+.. .....++.++|.+
T Consensus 104 ~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~---~~~~---------~~~~~~l~vip~~ 170 (320)
T 1zu4_A 104 RLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLE---EWIK---------TRLNNKVDLVKAN 170 (320)
T ss_dssp SCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHH---HHHT---------TTSCTTEEEECCS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH---HHHh---------ccccCCceEEeCC
Confidence 3579999965 9999999999999999999999999999998753210000 0000 0013578888654
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH--HHHH----hhH------hCCCeEEEEecCCcchH
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI--QLTL----CQV------VPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~--~l~~----~~~------~~~d~viiV~~p~~~s~ 319 (370)
....... ....+.+.... .+.||||||||||..... .+.. ... ...|.+++|+.+.. ..
T Consensus 171 ~~~~~p~-------~~~~~~l~~~~-~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~-~~ 241 (320)
T 1zu4_A 171 KLNADPA-------SVVFDAIKKAK-EQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT-GQ 241 (320)
T ss_dssp STTCCHH-------HHHHHHHHHHH-HTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG-TH
T ss_pred CCCCCHH-------HHHHHHHHHHH-hcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC-cH
Confidence 3221111 11223332222 278999999999976532 1110 001 12688899987773 34
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..+.++. .+.+ ..++.|+|+|+++...
T Consensus 242 ~~l~~~~-~~~~-~~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 242 NGVIQAE-EFSK-VADVSGIILTKMDSTS 268 (320)
T ss_dssp HHHHHHH-HHTT-TSCCCEEEEECGGGCS
T ss_pred HHHHHHH-HHhh-cCCCcEEEEeCCCCCC
Confidence 4444443 3332 3678999999998754
No 41
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.52 E-value=1.1e-15 Score=150.59 Aligned_cols=224 Identities=12% Similarity=0.108 Sum_probs=132.7
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...+++++.+.|+++++..+..|| +...|+++++....+..+ ..+....+.+.+.+.+.|..+.+....
T Consensus 21 ~~l~e~~~~~~l~ei~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v-------~~~~~~~~~v~~~l~~eL~~~L~~~~~- 92 (443)
T 3dm5_A 21 SSVDEALIKELVRDIQRALIQADVNVRLVLQLTREIQRRALEEKP-------PAGISKKEHIIKIVYEELTKFLGTEAK- 92 (443)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC-------CTTCCHHHHHHHHHHHHHHHHTTSSCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhccc-------cccCCcHHHHHHHHHHHHHHHhcCccc-
Confidence 456899999999999998887776 334455544321100100 112222566777777777654332110
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~ 229 (370)
. ......+++|+++ +.+|+||||++.+||.+|++.|+||+++|+|++++.....+.
T Consensus 93 --------~--------~~~~~~p~vIliv-G~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~------- 148 (443)
T 3dm5_A 93 --------P--------IEIKEKPTILLMV-GIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLR------- 148 (443)
T ss_dssp --------C--------CCCCSSSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHH-------
T ss_pred --------c--------cccCCCCeEEEEE-CcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHH-------
Confidence 0 0111235688888 559999999999999999999999999999998864311110
Q ss_pred cCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hH-HH----HHhhHh
Q 017486 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DI-QL----TLCQVV 303 (370)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~-~l----~~~~~~ 303 (370)
......++.+.+.+... .....+.+.++...++.||+||||||+... +. .+ .+....
T Consensus 149 --------~~~~~~gvpv~~~~~~~---------dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~ 211 (443)
T 3dm5_A 149 --------QLLDRYHIEVFGNPQEK---------DAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVI 211 (443)
T ss_dssp --------HHHGGGTCEEECCTTCC---------CHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred --------HHHHhcCCcEEecCCCC---------CHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhh
Confidence 00112245555432221 122233344444433679999999998543 11 11 112233
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..|.+++|+.+... .++....+.+.+ ..++.|+|+|+++...
T Consensus 212 ~pd~vlLVvDA~~g--q~a~~~a~~f~~-~~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 212 HPHEVILVIDGTIG--QQAYNQALAFKE-ATPIGSIIVTKLDGSA 253 (443)
T ss_dssp CCSEEEEEEEGGGG--GGHHHHHHHHHH-SCTTEEEEEECCSSCS
T ss_pred cCceEEEEEeCCCc--hhHHHHHHHHHh-hCCCeEEEEECCCCcc
Confidence 56889999887652 233334455543 4467899999998754
No 42
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.52 E-value=2.3e-14 Score=134.90 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=96.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g 251 (370)
.+++|+++ +++|+||||++.+||..++..|++|+++|+|++++.....++. .....++++++.+
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~---------------~~~~~~l~~~~~~ 160 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL---------------LGEKVGVPVLEVM 160 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHH---------------HHHHHTCCEEECC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHH---------------hcccCCeEEEEcC
Confidence 45799998 8999999999999999999999999999999987644321110 0122467888765
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--HHHH----HhhHhCCCeEEEEecCCcchHHHHHHH
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQLT----LCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~l~----~~~~~~~d~viiV~~p~~~s~~~~~~~ 325 (370)
....+. ...+..++.+...+||+|||||||..+. ..+. .......|.+++|+.+.. . .+..+.
T Consensus 161 ~~~~p~---------~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~~~~~~ 229 (295)
T 1ls1_A 161 DGESPE---------SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALSV 229 (295)
T ss_dssp TTCCHH---------HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-HHHHHH
T ss_pred CCCCHH---------HHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-HHHHHH
Confidence 422111 1123333333225799999999986542 1111 111234688888887663 3 333333
Q ss_pred HHHHHcCCCCeEEEEEcCCccCC
Q 017486 326 VRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.+.+.. ..++.|+|+|+++...
T Consensus 230 ~~~~~~-~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 230 ARAFDE-KVGVTGLVLTKLDGDA 251 (295)
T ss_dssp HHHHHH-HTCCCEEEEECGGGCS
T ss_pred HHHHhh-cCCCCEEEEECCCCCc
Confidence 444443 3667899999998754
No 43
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.50 E-value=1.9e-15 Score=151.80 Aligned_cols=225 Identities=12% Similarity=0.091 Sum_probs=131.0
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...+++++.++|++++...+..|| +...+++.+.....+.. +. .+....+.+.+.+.+.|..+.+....
T Consensus 21 ~~~~e~~~~~~l~el~~~Ll~adv~~~~~~~~~~~v~~~~~~~~------~~-~~~~~~~~~~~~v~~eL~~ll~~~~~- 92 (504)
T 2j37_W 21 TIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEE------MA-SGLNKRKMIQHAVFKELVKLVDPGVK- 92 (504)
T ss_dssp SSCCHHHHHHHHHHHHHHHCCTTTSSSTTHHHHHHHHHHHTTCC------CC-SSSCHHHHHHHHHHHHHHHHHCCCCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcCc------cc-ccCChHHHHHHHHHHHHHHHhccccc-
Confidence 456888888888888887777666 33445555432111011 11 11122456777777777665432111
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~ 229 (370)
++.. ..+.+++|+|+ +.+|+||||++.+||.++++.|+||++||+|++++.....+...
T Consensus 93 -------~~~~--------~~~~~~vI~iv-G~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~----- 151 (504)
T 2j37_W 93 -------AWTP--------TKGKQNVIMFV-GLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQN----- 151 (504)
T ss_dssp -------CCCC--------CSS--EEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHH-----
T ss_pred -------hhcc--------ccCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHH-----
Confidence 1100 01235688888 67999999999999999999999999999999886542211100
Q ss_pred cCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh--HHH----HHhhHh
Q 017486 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD--IQL----TLCQVV 303 (370)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~--~~l----~~~~~~ 303 (370)
....++.+++.+...+. ...+.+.+..+.+..||+||||||+.... ... ......
T Consensus 152 ----------~~~~~i~v~~~~~~~dp---------~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i 212 (504)
T 2j37_W 152 ----------ATKARIPFYGSYTEMDP---------VIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAI 212 (504)
T ss_dssp ----------HHHHTCCEEECCCCSCH---------HHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred ----------hhccCceEEccCCCCCH---------HHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhh
Confidence 01124555553322111 12223333333347899999999986642 111 111123
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.+|.+++|+.+.... . ..+..+.+.+. +++.++|+|+++...
T Consensus 213 ~pd~vllVvDa~~g~-~-~~~~a~~~~~~-~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 213 QPDNIVYVMDASIGQ-A-CEAQAKAFKDK-VDVASVIVTKLDGHA 254 (504)
T ss_dssp CCSEEEEEEETTCCT-T-HHHHHHHHHHH-HCCCCEEEECTTSCC
T ss_pred cCceEEEEEeccccc-c-HHHHHHHHHhh-cCceEEEEeCCcccc
Confidence 579999998876531 1 22333444432 566789999998764
No 44
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.44 E-value=4.3e-15 Score=146.39 Aligned_cols=225 Identities=16% Similarity=0.153 Sum_probs=134.5
Q ss_pred CcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCcceeE
Q 017486 73 TGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKVN 149 (370)
Q Consensus 73 ~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v~ 149 (370)
...+++++.++|+++++..+..|| +...+++++.....+..+ ..+....+.+.+.+.+.|..+.+....
T Consensus 17 ~~l~e~~~~~~l~el~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~v~~~v~~eL~~~L~~~~~- 88 (433)
T 3kl4_A 17 STPYEKAVDEFIKDLQKSLISSDVNVKLVFSLTAKIKERLNKEKP-------PSVLERKEWFISIVYDELSKLFGGDKE- 88 (433)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCC-------CTTCCHHHHHHHHHHHHHHHHHCSSSC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhcccc-------cccCChHHHHHHHHHHHHHHhcCcccc-
Confidence 457899999999999999888887 445566555432100111 112223667777777777654332110
Q ss_pred EEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccc
Q 017486 150 VTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLE 229 (370)
Q Consensus 150 V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~ 229 (370)
.. ......+++|+++ |.+|+||||++.+||.+++..|++|+++|+|.+++.....+.
T Consensus 89 -------~~--------~~~~~~~~vI~lv-G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~------- 145 (433)
T 3kl4_A 89 -------PN--------VNPTKLPFIIMLV-GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLL------- 145 (433)
T ss_dssp -------CC--------CSCCSSSEEEEEC-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHH-------
T ss_pred -------cc--------ccccCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHH-------
Confidence 00 0112235678777 889999999999999999999999999999987754211000
Q ss_pred cCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC---hHH-----HHHhh
Q 017486 230 MNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG---DIQ-----LTLCQ 301 (370)
Q Consensus 230 ~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~---~~~-----l~~~~ 301 (370)
......++.+.+..... .........+..+.+..||+||||||+... +.. ..+..
T Consensus 146 --------~~~~~~gv~~~~~~~~~---------dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~ 208 (433)
T 3kl4_A 146 --------QLGNQIGVQVYGEPNNQ---------NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYD 208 (433)
T ss_dssp --------HHHHTTTCCEECCTTCS---------CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHH
T ss_pred --------HHHHhcCCceeeccccC---------CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHH
Confidence 00011234444322111 122334455555556799999999997533 111 11222
Q ss_pred HhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 302 VVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 302 ~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
....+.+++|+.+... .++....+.+.+ ..++.|+|+|+.+...
T Consensus 209 ~~~pd~vlLVlDa~~g--q~a~~~a~~f~~-~~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 209 VLKPDDVILVIDASIG--QKAYDLASRFHQ-ASPIGSVIITKMDGTA 252 (433)
T ss_dssp HHCCSEEEEEEEGGGG--GGGHHHHHHHHH-HCSSEEEEEECGGGCS
T ss_pred hhCCcceEEEEeCccc--hHHHHHHHHHhc-ccCCcEEEEecccccc
Confidence 3345888888876542 233344455543 2355899999998754
No 45
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.42 E-value=1.4e-12 Score=128.94 Aligned_cols=146 Identities=17% Similarity=0.199 Sum_probs=94.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecC-
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG- 251 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g- 251 (370)
+++|+|++ .+|+||||++.+||..+++.|+||+++|+|++++.....+.. .....|+.+++.+
T Consensus 99 ~~vI~ivG-~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~---------------~~~~~gv~v~~~~~ 162 (432)
T 2v3c_C 99 QNVILLVG-IQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQ---------------LAEKIHVPIYGDET 162 (432)
T ss_dssp CCCEEEEC-CSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHH---------------HHHHSSCCEECCSS
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHH---------------hhhccCcceEecCC
Confidence 45888884 699999999999999999999999999999998765332210 0112467777754
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChH-HH-H----HhhHhCCCeEEEEecCCcchHHHHHHH
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDI-QL-T----LCQVVPLTAAVIVTTPQKLAFIDVAKG 325 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~-~l-~----~~~~~~~d~viiV~~p~~~s~~~~~~~ 325 (370)
...+...+ +.+.+..+ ..||+||||||+..... .+ . ......+|.+++|+.+.... +....
T Consensus 163 ~~~dp~~i---------~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~ 229 (432)
T 2v3c_C 163 RTKSPVDI---------VKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQ 229 (432)
T ss_dssp SCCSSSTT---------HHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHH
T ss_pred CCCCHHHH---------HHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHH
Confidence 21111111 23334333 68999999999876421 11 1 11122468888888764432 33334
Q ss_pred HHHHHcCCC-CeEEEEEcCCccCC
Q 017486 326 VRMFSKLKV-PCIAVVENMCHFDA 348 (370)
Q Consensus 326 ~~~l~~~~~-~~~gvV~N~v~~~~ 348 (370)
.+.+.. .. ++.|+|+|+++...
T Consensus 230 ~~~~~~-~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 230 AKAFKE-AVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp HHHHHT-TSCSCEEEEEECSSSCS
T ss_pred HHHHhh-cccCCeEEEEeCCCCcc
Confidence 444543 35 77999999998754
No 46
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.40 E-value=2.1e-13 Score=125.22 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=41.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP 218 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~ 218 (370)
+...+.+.++|||+||||++.+||.+++ .|+||++||+|++...+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~ 57 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELP 57 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccC
Confidence 4468889999999999999999999999 999999999999987654
No 47
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.37 E-value=2.2e-12 Score=116.94 Aligned_cols=166 Identities=11% Similarity=0.090 Sum_probs=101.1
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc------ccccCCCCCceeecccCCe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR------LLEMNPEKRTIIPTEYLGV 245 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~------~~~~~~~~~~i~~~~~~~l 245 (370)
.++.|.|++...|+|||+++++|+.+|+++|+||..+= |-.......... ........ .+....+.
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K-----Pv~~g~~~~~~~~~~~D~~~~~~~~~---~~~~~~~~ 74 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK-----PVASGQSQFSELCEDVESILNAYKHK---FTAAEINL 74 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC-----SEEESBCSSSSSBHHHHHHHHHTTTS---SCHHHHCS
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec-----ceeecCccCCCCCChHHHHHHhcCCC---CChhhEEE
Confidence 35799999999999999999999999999999999843 111100000000 00000000 00011122
Q ss_pred eEEecCCCCccccccCC-chHHHHHHHHHHh-cCCCCCcEEEEcCCCCCCh------HHHHHhhHhCCCeEEEEecCCcc
Q 017486 246 KLVSFGFSGQGRAIMRG-PMVSGVINQLLTT-TEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKL 317 (370)
Q Consensus 246 ~vl~~g~~~~~~~~~~~-~~~~~~l~~ll~~-~~~~~yD~VIIDtpp~~~~------~~l~~~~~~~~d~viiV~~p~~~ 317 (370)
..+.............+ ......+.+.++. +. ++||+||||+++|+.+ ....++... ...+++|+.+...
T Consensus 75 ~~~~~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~l-~~pviLV~~~~~~ 152 (228)
T 3of5_A 75 ISFNQAVAPHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKAL-QIPVLLVSAIKVG 152 (228)
T ss_dssp EEESSSSCHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHHH-TCCEEEEEECSTT
T ss_pred EEECCCCCHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHHc-CCCEEEEEcCCcc
Confidence 33322211111111111 1122345555555 44 7899999999987532 112222222 2568999999999
Q ss_pred hHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 318 AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 318 s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
++..+...++.+++.++++.|+|+|+++.+
T Consensus 153 ~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~ 182 (228)
T 3of5_A 153 CINHTLLTINELNRHNIKLAGWIANCNDSN 182 (228)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEECCTT
T ss_pred hHHHHHHHHHHHHhCCCcEEEEEEECcCCc
Confidence 999999999999999999999999998764
No 48
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.31 E-value=2.3e-11 Score=111.07 Aligned_cols=179 Identities=11% Similarity=0.070 Sum_probs=102.6
Q ss_pred cccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccc--cc-cc-CCCCCceee
Q 017486 164 QLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENR--LL-EM-NPEKRTIIP 239 (370)
Q Consensus 164 ~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~--~~-~~-~~~~~~i~~ 239 (370)
..+.+++.|++.|.|++...|+|||++++.|+.+|+++|+||..+-- ........-+...+ .. .. ......+.+
T Consensus 12 ~~~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP--v~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~ 89 (242)
T 3qxc_A 12 SGRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKP--IETGVNDAINHSSDAHLFLQDNRLLDRSLTL 89 (242)
T ss_dssp -------CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECC--EECSCCTTTCCCSHHHHHHHHHHTTCTTCCH
T ss_pred chhhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEee--eecCCcccCCCCchHHHHHHHHHHHhCCCCh
Confidence 34577889999999999999999999999999999999999999741 11000000000000 00 00 000000000
Q ss_pred cccCCeeEEecCCCCccccccCC---chHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh------HHHHHhhHhCCCeEEE
Q 017486 240 TEYLGVKLVSFGFSGQGRAIMRG---PMVSGVINQLLTTTEWGELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVI 310 (370)
Q Consensus 240 ~~~~~l~vl~~g~~~~~~~~~~~---~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~------~~l~~~~~~~~d~vii 310 (370)
..-+...+..+..........+ +...+.+.+.++.+. +.||+||||.++|+.+ ....++... ..-+|+
T Consensus 90 -~~~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~l-~~pVIL 166 (242)
T 3qxc_A 90 -KDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALKL-KAKMLL 166 (242)
T ss_dssp -HHHCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHHH-TCEEEE
T ss_pred -HHeeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHHc-CCCEEE
Confidence 0001112211110000000011 112234555555554 7899999999987742 112222222 256899
Q ss_pred EecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 311 VTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 311 V~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
|+.++..++..+...++.+++.+++ .|+|+|+++.+.
T Consensus 167 V~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~ 203 (242)
T 3qxc_A 167 ISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNT 203 (242)
T ss_dssp EECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCC
T ss_pred EEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Confidence 9999999999999999999999999 999999998753
No 49
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.28 E-value=1.6e-11 Score=115.96 Aligned_cols=149 Identities=17% Similarity=0.200 Sum_probs=90.1
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g 251 (370)
.+++|++++. +|+||||++.+||..++..|++|+++|+|.+++.... .+. ......++.+++..
T Consensus 103 ~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~e------qL~---------~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 103 PPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIE------QLK---------IWGERVGATVISHS 166 (306)
T ss_dssp SCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHH------HHH---------HHHHHHTCEEECCS
T ss_pred CCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHH------HHH---------HHHHHcCCcEEecC
Confidence 4579999965 9999999999999999999999999999997643210 000 00011255666533
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH-H-----HHhhH------hCCCeEEEEecCCcchH
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ-L-----TLCQV------VPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~-l-----~~~~~------~~~d~viiV~~p~~~s~ 319 (370)
...+...+ ....+... . ..+||+||||+|+...... + ..... ...+.+++|+... +..
T Consensus 167 s~~~~~~v-----~~~al~~a---~-~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~-t~~ 236 (306)
T 1vma_A 167 EGADPAAV-----AFDAVAHA---L-ARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT-TGQ 236 (306)
T ss_dssp TTCCHHHH-----HHHHHHHH---H-HTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG-GHH
T ss_pred CccCHHHH-----HHHHHHHH---H-hcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC-CCH
Confidence 22111111 11122222 2 2789999999998543211 1 00111 1257888888765 344
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..+..+ +.+.+ ..++.|+|+|+++...
T Consensus 237 ~~l~~a-~~~~~-~~~i~gvVlTk~D~~~ 263 (306)
T 1vma_A 237 NGLVQA-KIFKE-AVNVTGIILTKLDGTA 263 (306)
T ss_dssp HHHHHH-HHHHH-HSCCCEEEEECGGGCS
T ss_pred HHHHHH-HHHHh-cCCCCEEEEeCCCCcc
Confidence 444444 33433 3667899999998754
No 50
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=99.24 E-value=1.8e-12 Score=105.31 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=64.8
Q ss_pred ccHHHHHHHhccCCCCCCCCCccccCCeeEEEEe-----cCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhc-CCCccee
Q 017486 75 TAENDVLKALSQIIDPDFGTDIVSCGFVKDMQIN-----EALGEVSFRLELTTPACPIKDMFEQRANEVVLA-IPWVNKV 148 (370)
Q Consensus 75 ~~~~~v~~~L~~V~dPel~~div~lGlV~~v~v~-----~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~-l~gv~~v 148 (370)
..+++|+++|+.|+|||+|.++++||+|+++.+. ++++.|.|.|++|.++||++..|...++.+|.. +|+.-++
T Consensus 8 ~~~~eI~d~L~~I~DPEiPvtl~dLGvV~~v~I~v~~~~~~~~~V~V~~TPT~p~Cp~a~~I~l~Ir~kL~~~lp~~~kV 87 (130)
T 3ux2_A 8 EKALEVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKL 87 (130)
T ss_dssp HHHHHHHHHHTTCBCSSSSSBTTTTTSCCGGGEEEEEEETTEEEEEECCCCCCCSSCHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred ccHHHHHHHHhcCCCCCCCCCHHHCCeeeecceEeecccCCCCeEEEEEEeCCCCCCchHHHHHHHHHHHHHhCCCceEE
Confidence 4688999999999999999999999999997663 233679999999999999999999999999965 6665444
Q ss_pred EEE
Q 017486 149 NVT 151 (370)
Q Consensus 149 ~V~ 151 (370)
.+.
T Consensus 88 ~v~ 90 (130)
T 3ux2_A 88 EIY 90 (130)
T ss_dssp CCC
T ss_pred EEE
Confidence 433
No 51
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.21 E-value=6.1e-11 Score=108.79 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=101.2
Q ss_pred cCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEe
Q 017486 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVS 249 (370)
Q Consensus 170 ~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~ 249 (370)
.+.++.|.|++...|+|||++++.|+.+|+++|+||..+=-=..+ .... +.+........... . ..+...+.
T Consensus 23 ~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g-~~~~--~~D~~~~~~~~g~~---~--~~~~~~~~ 94 (251)
T 3fgn_A 23 QSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTG-TARG--DDDLAEVGRLAGVT---Q--LAGLARYP 94 (251)
T ss_dssp CSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECC-GGGT--CCHHHHHHHHHCCC---E--EEEEEECS
T ss_pred ccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecC-CCCC--CHHHHHHHHHcCCC---C--CCCCeeEC
Confidence 445789999999999999999999999999999999986310000 0000 00000000000000 0 01111111
Q ss_pred cCCCCccccccCC--chHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-------HHHHHhhHhCCCeEEEEecCCcchHH
Q 017486 250 FGFSGQGRAIMRG--PMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFI 320 (370)
Q Consensus 250 ~g~~~~~~~~~~~--~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-------~~l~~~~~~~~d~viiV~~p~~~s~~ 320 (370)
............+ ....+.+.+.++.+. ++||+||||.++|+.+ ....++.. ...-+|+|+.++..++.
T Consensus 95 ~p~sP~~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~~-l~~pVILV~~~~~g~i~ 172 (251)
T 3fgn_A 95 QPMAPAAAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAVD-VAAAALVVVTADLGTLN 172 (251)
T ss_dssp SSSCHHHHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHHH-TTCEEEEEECSSTTHHH
T ss_pred CCCChHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHHH-cCCCEEEEEcCCCccHH
Confidence 1111000000111 112334666666554 7899999999988732 11222222 23678999999999999
Q ss_pred HHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 321 DVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 321 ~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
.+...++.+++.++++.|+|+|++..
T Consensus 173 ~~~lt~~~l~~~g~~i~GvIlN~v~~ 198 (251)
T 3fgn_A 173 HTKLTLEALAAQQVSCAGLVIGSWPD 198 (251)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEECS
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCC
Confidence 99999999999999999999999864
No 52
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.12 E-value=1.7e-10 Score=108.56 Aligned_cols=142 Identities=17% Similarity=0.160 Sum_probs=85.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g 251 (370)
+++|+|++ .+|+||||++.+||..++. .|++|+++|+|++++.....+.. +. ...++.+...
T Consensus 105 g~vi~lvG-~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~---~~------------~~~gl~~~~~- 167 (296)
T 2px0_A 105 SKYIVLFG-STGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKT---YA------------ELLQAPLEVC- 167 (296)
T ss_dssp SSEEEEEE-STTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHH---HH------------TTTTCCCCBC-
T ss_pred CcEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHH---HH------------HhcCCCeEec-
Confidence 46899985 5899999999999999995 89999999999986443111100 00 0012221110
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHH--H-HHhhHh---CCCeEEEEecCCcchHHHHHHH
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQ--L-TLCQVV---PLTAAVIVTTPQKLAFIDVAKG 325 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~--l-~~~~~~---~~d~viiV~~p~~~s~~~~~~~ 325 (370)
..+ ..+...+..+ .+||+||||||+...... + .+.... ..+.+++|+... ....++.++
T Consensus 168 ---------~~~---~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at-~~~~~~~~~ 232 (296)
T 2px0_A 168 ---------YTK---EEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT-AKYEDMKHI 232 (296)
T ss_dssp ---------SSH---HHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT-BCHHHHHHH
T ss_pred ---------CCH---HHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC-CCHHHHHHH
Confidence 000 1133333333 679999999997553211 1 111222 246667776443 345566666
Q ss_pred HHHHHcCCCCeEEEEEcCCccCC
Q 017486 326 VRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 326 ~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.+.+.. +++.|+|+|+++...
T Consensus 233 ~~~~~~--l~~~giVltk~D~~~ 253 (296)
T 2px0_A 233 VKRFSS--VPVNQYIFTKIDETT 253 (296)
T ss_dssp TTTTSS--SCCCEEEEECTTTCS
T ss_pred HHHHhc--CCCCEEEEeCCCccc
Confidence 666653 456899999998654
No 53
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.08 E-value=2e-10 Score=110.68 Aligned_cols=152 Identities=18% Similarity=0.141 Sum_probs=83.0
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcC-CCCcccccccCCCCCceeecccCCeeEEec
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTM-VSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~-l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
...+|+++ |++|+||||++.+|+..++..|+||+++|+|++.+..... ++..... ......+++.+.+.
T Consensus 78 ~~~~I~i~-G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~---------~~~~~~~~~~i~~~ 147 (355)
T 3p32_A 78 NAHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRM---------ARLAVHPNAYIRPS 147 (355)
T ss_dssp CSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------C---------HHHHTCTTEEEECC
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhH---------HhhccCCCeeEEEC
Confidence 34577776 7899999999999999999999999999999987642211 1100000 00012346666654
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHH
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 330 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~ 330 (370)
+..... ........+.+..+.+..||++|||||+ .......+ ...+|.+++|+.++..... ..+...+
T Consensus 148 ~~~~~~------~~~~~~t~d~i~~~~~~~~~~iiiDTpG-i~~~~~~~--~~~aD~vl~V~d~~~~~~~--~~l~~~~- 215 (355)
T 3p32_A 148 PTSGTL------GGVTRATRETVVLLEAAGFDVILIETVG-VGQSEVAV--ANMVDTFVLLTLARTGDQL--QGIKKGV- 215 (355)
T ss_dssp C--CCH------HHHHHHHHHHHHHHHHTTCCEEEEEECS-CSSHHHHH--HTTCSEEEEEEESSTTCTT--TTCCTTS-
T ss_pred CCCccc------cchhHHHHHHHHHHhhCCCCEEEEeCCC-CCcHHHHH--HHhCCEEEEEECCCCCccH--HHHHHhH-
Confidence 433111 0111222222233334789999999985 54433333 3457999999987654211 1111111
Q ss_pred cCCCCeEEEEEcCCccC
Q 017486 331 KLKVPCIAVVENMCHFD 347 (370)
Q Consensus 331 ~~~~~~~gvV~N~v~~~ 347 (370)
.+.+ ..+|+||++..
T Consensus 216 -~~~p-~ivVlNK~Dl~ 230 (355)
T 3p32_A 216 -LELA-DIVVVNKADGE 230 (355)
T ss_dssp -GGGC-SEEEEECCCGG
T ss_pred -hhcC-CEEEEECCCCc
Confidence 1234 35899999853
No 54
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.73 E-value=3.4e-08 Score=94.55 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=78.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCc-CCCCcccccccCCCCCceeecccCCeeEEec
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPT-MVSPENRLLEMNPEKRTIIPTEYLGVKLVSF 250 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~-~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~ 250 (370)
...+|+++ |++|+||||+..+|+..+...|.+|.++|.|++.+.... +++........ ...++..+.+.
T Consensus 55 ~~~~i~i~-G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~---------~~~~~~~i~~~ 124 (341)
T 2p67_A 55 NTLRLGVT-GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDL---------ARAEAAFIRPV 124 (341)
T ss_dssp CSEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTT---------TTCTTEEEEEE
T ss_pred CCEEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhh---------ccCCCceeecC
Confidence 45688887 699999999999999999999999999999998754322 12211100000 00112222221
Q ss_pred CCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHH
Q 017486 251 GFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFS 330 (370)
Q Consensus 251 g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~ 330 (370)
.... ..+......++.+. .+.+..|+++|||||+ ..+....+ ...+|.+++|+.+.... .... +.. .
T Consensus 125 ~~~~-----~l~g~~~~~~~~~~-~~~~~~~~i~liDTpG-~~~~~~~~--~~~aD~vl~Vvd~~~~~--~~~~-l~~-~ 191 (341)
T 2p67_A 125 PSSG-----HLGGASQRARELML-LCEAAGYDVVIVETVG-VGQSETEV--ARMVDCFISLQIAGGGD--DLQG-IKK-G 191 (341)
T ss_dssp CC----------CHHHHHHHHHH-HHHHTTCSEEEEEEEC-CTTHHHHH--HTTCSEEEEEECC--------CC-CCH-H
T ss_pred cccc-----ccchhHHHHHHHHH-HhhccCCCEEEEeCCC-ccchHHHH--HHhCCEEEEEEeCCccH--HHHH-HHH-h
Confidence 1100 11111222233322 2224789999999986 43332222 35679999999876431 1110 100 0
Q ss_pred cCCCCeEEEEEcCCccC
Q 017486 331 KLKVPCIAVVENMCHFD 347 (370)
Q Consensus 331 ~~~~~~~gvV~N~v~~~ 347 (370)
..+.+. .+|+||++..
T Consensus 192 ~~~~p~-ivv~NK~Dl~ 207 (341)
T 2p67_A 192 LMEVAD-LIVINKDDGD 207 (341)
T ss_dssp HHHHCS-EEEECCCCTT
T ss_pred hhcccC-EEEEECCCCC
Confidence 113343 4899999864
No 55
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.65 E-value=6.7e-09 Score=98.87 Aligned_cols=230 Identities=17% Similarity=0.169 Sum_probs=128.0
Q ss_pred CCcccHHHHHHHhccCCCCCCCCCc---cccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHHHHHHHHHHhhcCCCccee
Q 017486 72 STGTAENDVLKALSQIIDPDFGTDI---VSCGFVKDMQINEALGEVSFRLELTTPACPIKDMFEQRANEVVLAIPWVNKV 148 (370)
Q Consensus 72 ~~~~~~~~v~~~L~~V~dPel~~di---v~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~i~~~i~e~L~~l~gv~~v 148 (370)
....+++++.+.|+++++..+..|| +...++++++....+.++.-.. ...+.+.+.+++.|..+.+...
T Consensus 44 ~~~~~~~~~~~~~~~~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~l~~~~- 115 (328)
T 3e70_C 44 TVEIKEKDVDKALDELEIDLLEADVALEVVDALREKIKQKLVGKKVRIGT-------DKGKIIEEAVKEAVSEILETSR- 115 (328)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC----------CHHHHHHHHHHHHHHSCCSS-
T ss_pred hccCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCcc-------CHHHHHHHHHHHHHHHHhCCcc-
Confidence 4678999999999999998888777 3355666655332112221111 1145666667777665432111
Q ss_pred EEEeecCCCCchhcccccccccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCccccc
Q 017486 149 NVTMSAQPARPIFAEQLPEGLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLL 228 (370)
Q Consensus 149 ~V~l~~~p~~~~~~~~~~~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~ 228 (370)
.+++. .. ......+.+|++. |..|+||||+...||..+...|.+|++++.|.++.+....+.
T Consensus 116 ~~~~~------~~-----~~~~~~g~vi~lv-G~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~------ 177 (328)
T 3e70_C 116 RIDLI------EE-----IRKAEKPYVIMFV-GFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLE------ 177 (328)
T ss_dssp CCCHH------HH-----HHSSCSSEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHH------
T ss_pred ccchh------hh-----cccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHH------
Confidence 01110 00 0011235688888 779999999999999999999999999999987643210000
Q ss_pred ccCCCCCceeecccCCeeEEecCCCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC--hHH---H-HHhhH
Q 017486 229 EMNPEKRTIIPTEYLGVKLVSFGFSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG--DIQ---L-TLCQV 302 (370)
Q Consensus 229 ~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~--~~~---l-~~~~~ 302 (370)
.....-++.+++......+. ....+.+.... ...||++++|+++... ... + .....
T Consensus 178 ---------~~~~~~gv~~v~q~~~~~p~-----~~v~e~l~~~~----~~~~d~vliDtaG~~~~~~~l~~eL~~i~ra 239 (328)
T 3e70_C 178 ---------EHAKRIGVKVIKHSYGADPA-----AVAYDAIQHAK----ARGIDVVLIDTAGRSETNRNLMDEMKKIARV 239 (328)
T ss_dssp ---------HHHHHTTCEEECCCTTCCHH-----HHHHHHHHHHH----HHTCSEEEEEECCSCCTTTCHHHHHHHHHHH
T ss_pred ---------HHHHHcCceEEeccccCCHH-----HHHHHHHHHHH----hccchhhHHhhccchhHHHHHHHHHHHHHHH
Confidence 00011234444322111111 01122222222 2579999999997543 111 1 12223
Q ss_pred hCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 303 VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 303 ~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
...|..+++.++... .++.+.++.+.+ ..++.++|+|+.+...
T Consensus 240 l~~de~llvLDa~t~--~~~~~~~~~~~~-~~~it~iilTKlD~~a 282 (328)
T 3e70_C 240 TKPNLVIFVGDALAG--NAIVEQARQFNE-AVKIDGIILTKLDADA 282 (328)
T ss_dssp HCCSEEEEEEEGGGT--THHHHHHHHHHH-HSCCCEEEEECGGGCS
T ss_pred hcCCCCEEEEecHHH--HHHHHHHHHHHH-hcCCCEEEEeCcCCcc
Confidence 456888888875443 344444444442 2344678999988643
No 56
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.56 E-value=8.9e-08 Score=85.86 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=40.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~s 216 (370)
++...|.++|||+||||++.++|..++++|++|+++|+|+++..
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 46778888999999999999999999999999999999998643
No 57
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.33 E-value=2e-06 Score=85.57 Aligned_cols=149 Identities=14% Similarity=0.136 Sum_probs=82.3
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g 251 (370)
.+.+|+|. |.+|+||||+...||..+...|.+|++.+.|..+..... .+.. .....++.+++..
T Consensus 292 ~GeVI~LV-GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~e------QL~~---------~~~r~~I~vV~Q~ 355 (503)
T 2yhs_A 292 APFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVE------QLQV---------WGQRNNIPVIAQH 355 (503)
T ss_dssp TTEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHH------HHHH---------HHHHHTCCEECCS
T ss_pred CCeEEEEE-CCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHH------HHHH---------HHHhcCceEEecc
Confidence 35688888 779999999999999999988899999999976421000 0000 0001134444322
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC-hHHHH-----HhhH------hCCCeEEEEecCCcchH
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG-DIQLT-----LCQV------VPLTAAVIVTTPQKLAF 319 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~-~~~l~-----~~~~------~~~d~viiV~~p~~~s~ 319 (370)
.... ........+.... ...||+|||||++... +..+. +... ...+.+++|..+... .
T Consensus 356 ~~~~-----p~~tV~e~l~~a~----~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG-q 425 (503)
T 2yhs_A 356 TGAD-----SASVIFDAIQAAK----ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG-Q 425 (503)
T ss_dssp TTCC-----HHHHHHHHHHHHH----HTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT-H
T ss_pred cCcC-----HHHHHHHHHHHHH----hcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc-H
Confidence 1110 0011122233222 2689999999997643 22111 1101 113577888775543 2
Q ss_pred HHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 320 IDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..+ ..++.|.+ ...+.|+|+++.+...
T Consensus 426 ~al-~~ak~f~~-~~~itgvIlTKLD~ta 452 (503)
T 2yhs_A 426 NAV-SQAKLFHE-AVGLTGITLTKLDGTA 452 (503)
T ss_dssp HHH-HHHHHHHH-HTCCSEEEEECGGGCS
T ss_pred HHH-HHHHHHHh-hcCCCEEEEEcCCCcc
Confidence 223 33334432 2335689999988643
No 58
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=98.29 E-value=4.5e-07 Score=88.73 Aligned_cols=51 Identities=29% Similarity=0.408 Sum_probs=47.7
Q ss_pred CCeEEEEEeCCC---CChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcc
Q 017486 172 ISNIVAVSSCKG---GVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPEN 225 (370)
Q Consensus 172 ~~kvI~v~S~kG---GvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~ 225 (370)
..|+|+|||..+ |+||||+++|||..||+.|+||+++ +++|+++..||.+.
T Consensus 56 ~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi---LR~Psl~~~FGikg 109 (557)
T 3pzx_A 56 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIKG 109 (557)
T ss_dssp CCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSHHHHHTCC
T ss_pred CCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE---eCCCCccccCCCCC
Confidence 468999999999 9999999999999999999999999 99999999988764
No 59
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.95 E-value=6e-05 Score=70.73 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=38.4
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~ 215 (370)
.+.+|+++ |.+|+||||+...||..+...+.+|++.+.|.++.
T Consensus 101 ~g~vi~lv-G~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~ 143 (304)
T 1rj9_A 101 KGRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA 143 (304)
T ss_dssp SSSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCCh
Confidence 35699999 77999999999999999998899999999998764
No 60
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.85 E-value=0.0003 Score=67.23 Aligned_cols=150 Identities=14% Similarity=0.116 Sum_probs=72.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCC-cCCCCcccccccCCCCCceeecccCCeeEEecC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLP-TMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFG 251 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~-~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g 251 (370)
..+|+++ |.+|+||||+.-.|+..+...+.+|.++..|++..... .+++-...+..... .+...+-+.+
T Consensus 74 ~~~v~lv-G~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~---------~~~~~v~~~~ 143 (349)
T 2www_A 74 AFRVGLS-GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSR---------DMNAYIRPSP 143 (349)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTT---------CTTEEEECC-
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcC---------CCCEEEEecC
Confidence 4578888 99999999999999999988899999999999865421 12221111100000 0111111111
Q ss_pred CCCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHc
Q 017486 252 FSGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSK 331 (370)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~ 331 (370)
.... .--........+..+ . ...+|++|+|||+ +......+ ...+|.+++|+.+.... ........+
T Consensus 144 ~~~~--lgg~tr~~~~~~~~~-~---~~~~~~iliDT~G-i~~~~~~l--~~~~d~vl~V~d~~~~~--~~~~i~~~i-- 210 (349)
T 2www_A 144 TRGT--LGGVTRTTNEAILLC-E---GAGYDIILIETVG-VGQSEFAV--ADMVDMFVLLLPPAGGD--ELQGIKRGI-- 210 (349)
T ss_dssp ----------CTTHHHHHHHH-H---HTTCSEEEEECCC-C--CHHHH--HTTCSEEEEEECCC----------------
T ss_pred Cccc--cccchHHHHHHHHhh-c---cCCCCEEEEECCC-cchhhhhH--HhhCCEEEEEEcCCcch--hHHHhHHHH--
Confidence 0000 000001111222211 1 2689999999986 43223333 33569999998876431 111111111
Q ss_pred CCCCeEEEEEcCCcc
Q 017486 332 LKVPCIAVVENMCHF 346 (370)
Q Consensus 332 ~~~~~~gvV~N~v~~ 346 (370)
...+. -+|+||++.
T Consensus 211 l~~~~-ivVlNK~Dl 224 (349)
T 2www_A 211 IEMAD-LVAVTKSDG 224 (349)
T ss_dssp CCSCS-EEEECCCSG
T ss_pred HhcCC-EEEEeeecC
Confidence 23343 478899985
No 61
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.73 E-value=0.00011 Score=70.41 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=37.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+.+|++. |..|+||||+...||..+...+.+|++.+.|.++
T Consensus 157 g~vi~lv-G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 157 PAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CeEEEEE-cCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 4689988 7899999999999999999888999999999865
No 62
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=97.68 E-value=0.00079 Score=64.00 Aligned_cols=141 Identities=18% Similarity=0.204 Sum_probs=94.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
.+.|.+++.-..+||||++..|..++.++|.++..+=.-. ... +... ..++ ++
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgq-----tg~------~~~~-----~gi~-----~D------ 204 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQ-----TGV------MLEG-----DGVA-----LD------ 204 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSH-----HHH------HHHS-----CSCC-----GG------
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccc-----hhh------hhhc-----CCcc-----hh------
Confidence 6789999999999999999999999999999998732111 000 0000 0000 00
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCC----hHHHHHhhHhCCCeEEEEecCCcchH---------
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTG----DIQLTLCQVVPLTAAVIVTTPQKLAF--------- 319 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~----~~~l~~~~~~~~d~viiV~~p~~~s~--------- 319 (370)
..........++++...+. ++||+|||--..++- ...+.+......|.+|++..|....+
T Consensus 205 ------av~~df~aG~ve~~~~~~~-~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p 277 (349)
T 2obn_A 205 ------AVRVDFAAGAVEQMVMRYG-KNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIP 277 (349)
T ss_dssp ------GSBHHHHHHHHHHHHHHHT-TTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCC
T ss_pred ------HHHHHHHhhhHHHHHHHhc-cCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCC
Confidence 0111122335556655543 689999999887653 22233444445688999999888766
Q ss_pred --HHHHHHHHHHHc-----CCCCeEEEEEcCCccC
Q 017486 320 --IDVAKGVRMFSK-----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 320 --~~~~~~~~~l~~-----~~~~~~gvV~N~v~~~ 347 (370)
.....+++.+.+ .+.++.|+++|..+..
T Consensus 278 ~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~ 312 (349)
T 2obn_A 278 PLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLD 312 (349)
T ss_dssp CHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSC
T ss_pred CHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCC
Confidence 777888888765 6789999999987753
No 63
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=97.68 E-value=0.00024 Score=75.52 Aligned_cols=66 Identities=11% Similarity=0.023 Sum_probs=48.2
Q ss_pred CCcEEEEcCCCCCCh------HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTGD------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~------~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
.+|++||....|+.. ....++.... --+|+|+....-++..+.-.++.+...++++.|+|+|++..
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~-~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~ 272 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFR-LPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGL 272 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGC-CCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSS
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCch
Confidence 799999998765421 1222222322 34788888888888888888898988899999999998764
No 64
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.58 E-value=0.00022 Score=66.72 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=36.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+.++++. |..|+||||+...||..+...+.+|++.+.|..+
T Consensus 100 g~vi~lv-G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 100 PAVIMIV-GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4688888 7799999999999999999888999999999765
No 65
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.55 E-value=0.00018 Score=72.54 Aligned_cols=69 Identities=13% Similarity=0.006 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..+.+.|+|||+-..........+..+|.+++|+.+...........+..+...++++ -+|+||++...
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~Dl~~ 148 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDRDI 148 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTSCC
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCcCCcc
Confidence 5788999999963221222233355689999999887655556677778887788885 48999998643
No 66
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.49 E-value=0.00038 Score=72.67 Aligned_cols=68 Identities=21% Similarity=0.020 Sum_probs=49.6
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..|++.|||||+-..........+..+|.+++|+.+...........+..+...+++++ +|+||++..
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~~ 147 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDRM 147 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCcc
Confidence 56999999999643322223333456799999999887655666777777877888876 889999864
No 67
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.37 E-value=0.00025 Score=68.02 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
++++.++ +++|+||||+|.++|..+++.|.+|++||++.
T Consensus 63 G~ii~I~-G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3466666 89999999999999999999999999999975
No 68
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.35 E-value=0.00075 Score=58.96 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=31.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.++.++ ++| .||||.|..+|...+.+|+||+++=..-
T Consensus 30 ~i~v~t-G~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 30 IIIVFT-GNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CEEEEE-SSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEC-CCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 344444 777 9999999999999999999999997765
No 69
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.21 E-value=0.0023 Score=62.20 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=50.5
Q ss_pred CCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+||| |..+. ......+..+|.+++|+.+.........+.+..+...+++.+-+|+||++..
T Consensus 73 ~~~~~~iiDtp-G~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~ 141 (405)
T 2c78_A 73 AKRHYSHVDCP-GHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV 141 (405)
T ss_dssp SSCEEEEEECC-CSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECC-ChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence 56889999997 45443 2333334567999999988766566777788888888988556899999864
No 70
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.18 E-value=0.00087 Score=64.42 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=34.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.++.|+ +.+|+||||++.++|..+++.|.+|++||++.
T Consensus 75 ~li~I~-G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 75 RITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEE-cCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 466665 89999999999999999999999999999986
No 71
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.17 E-value=0.0038 Score=59.20 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=37.0
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+.+++++ |..|+||||+.-.|+..+...+.+|.++..|+..
T Consensus 54 ~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 35688888 9999999999999999998888899999999864
No 72
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.14 E-value=0.003 Score=59.01 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=44.6
Q ss_pred CCcEEEEcCCCCCChH----------HHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDI----------QLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~----------~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.+.++|+|||.-.... ......+..+|.+++|+.+... +..+....++.+.+.+.+++ +|+|+++..
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvi-lV~NK~Dl~ 135 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVI-VVINKIDKI 135 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEE-EEEECGGGS
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEE-EEEECccCC
Confidence 6789999999642211 1112223457999999987754 44444433788888788866 899999864
No 73
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.02 E-value=0.00093 Score=57.04 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=35.6
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
++++|+|++ ..|+||||++..|+..|..+|++|.+|..|+..
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 356888885 669999999999999999999999999999864
No 74
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.98 E-value=0.0039 Score=59.89 Aligned_cols=66 Identities=6% Similarity=-0.068 Sum_probs=49.4
Q ss_pred CCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEc-CCcc
Q 017486 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVEN-MCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N-~v~~ 346 (370)
..+.+.|+|||. ..+. ......+..+|.+++|+. ......++++.+..+...+++.+-+++| |++.
T Consensus 58 ~~~~i~iiDtPG-h~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 58 EGRNMVFVDAHS-YPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSSEEEEEECTT-TTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCeEEEEEECCC-hHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 567899999985 4332 223333456799999999 6666677888888888889998668888 9886
No 75
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.97 E-value=0.0047 Score=57.57 Aligned_cols=68 Identities=21% Similarity=0.166 Sum_probs=43.5
Q ss_pred CCCcEEEEcCCCCCCh--------HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~--------~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
+.+.++|+|||+-... .......+..+|.+++|+.....--.....+++.+.+. +.+++ +|+|+++..
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~i-lV~NK~Dl~ 130 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL-LVGNKLDAA 130 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEE-EEEECGGGC
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEE-EEEECcccC
Confidence 4578999999964321 11222224467999999887643222335566777776 77765 899999864
No 76
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.92 E-value=0.0036 Score=65.12 Aligned_cols=68 Identities=21% Similarity=0.012 Sum_probs=47.6
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||+-..........+..+|.+++|+.+...........+..+.+.+.+++ +|+||++..
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl~ 140 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDKL 140 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTST
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCcc
Confidence 56889999999643222222233445799999998876544555666777778888876 889999864
No 77
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.91 E-value=0.0016 Score=62.08 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=34.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
++++.++ +.+|+||||++.+++..+++.|.+|+++|++.
T Consensus 61 G~iv~I~-G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIY-GPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3567776 88999999999999999999999999999985
No 78
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.90 E-value=0.00031 Score=70.86 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=50.7
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+..+.+.|+|||+-..........+..+|.+++|+.+...........+..+...+++++ +|+||++..
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPii-vviNK~Dl~ 147 (528)
T 3tr5_A 79 YKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIM-TFINKMDRD 147 (528)
T ss_dssp ETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEE-EEEECTTSC
T ss_pred eCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCCc
Confidence 357889999999633222233333556799999999887656667778888888899866 899999864
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.89 E-value=0.012 Score=49.75 Aligned_cols=68 Identities=9% Similarity=-0.016 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc----hHHHHHHHHHHHHc-----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL----AFIDVAKGVRMFSK-----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~----s~~~~~~~~~~l~~-----~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+......+....+..+|.+++|...... .......+.+++.+ .+.+++ +|.|+++..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pii-lv~NK~Dl~ 148 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIV-IQVNKRDLP 148 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEE-EEEECTTST
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEE-EEEEchhcc
Confidence 456799999996433222322334567999999988743 22233333344433 355554 899999864
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.88 E-value=0.0085 Score=50.80 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
..+++.|+|+|+......+....+..+|.+++|..... .++..+...++.+.. .+.+++ +|.|+++..
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-lv~nK~Dl~ 139 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV-LVGNKCDLP 139 (190)
T ss_dssp EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE-EEEECTTCS
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEE-EEEECCcCC
Confidence 34789999998643212222222335688888876553 455666665555543 356655 999999864
No 81
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.87 E-value=0.0036 Score=60.68 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||. ..+.. .....+..+|.+++|+.+......+..+.+..+...+++.+-+++||++..
T Consensus 64 ~~~~~~iiDtpG-~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 64 AARHYAHTDCPG-HADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV 132 (397)
T ss_dssp SSCEEEEEECSS-HHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred CCeEEEEEECCC-hHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence 568899999984 43322 222223457999999998776556667777788888998666899999864
No 82
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.86 E-value=0.0044 Score=64.46 Aligned_cols=69 Identities=19% Similarity=0.073 Sum_probs=49.3
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
..+.+.|+|||+-..........+..+|.+++|+.+...........+..+.+.+++++ +|+||++...
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~~ 143 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDKTG 143 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTSTT
T ss_pred CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCccc
Confidence 56899999999643322233333455799999998877555556667777778888876 8899998643
No 83
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.83 E-value=0.011 Score=48.32 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=42.1
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
..+++.|+|+|+...........+..+|.+++|..... .+...+...++.+.+. +.+++ +|.|+++..
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~i-iv~nK~Dl~ 121 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV-LVGNKSDLA 121 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEE-EEEECTTCS
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEEchhhh
Confidence 35778999999743222222222345688888887653 3455556555555432 56655 999999864
No 84
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.82 E-value=0.0056 Score=52.08 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=43.3
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|............+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++..
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 140 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQ-VILVGNKCDLE 140 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccc
Confidence 35678999998633211122222445799999887644 4566666666666653 445 45899999863
No 85
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=96.82 E-value=0.0058 Score=61.82 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=54.6
Q ss_pred CCCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|++|-+=|||||. ..|. .-....+..+|++|+|+.+..--..+++..++.+.+.++|++ +++|+.+..
T Consensus 97 ~~~~~iNlIDTPG-HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~ 165 (548)
T 3vqt_A 97 YRDRVVNLLDTPG-HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDRE 165 (548)
T ss_dssp ETTEEEEEECCCC-GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSC
T ss_pred ECCEEEEEEeCCC-cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccch
Confidence 6788999999996 3322 222233567899999999988888899999999999999987 899999964
No 86
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.81 E-value=0.0058 Score=54.48 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=30.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
.|.+..|-.|.||||.+..++..++.+|++|+++-
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 34444599999999999999999999999999993
No 87
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.79 E-value=0.0051 Score=50.70 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=40.7
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHc--CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK--LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~--~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|...... ++..+...+..+.. .+.+++ +|.|+++..
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pii-lv~nK~Dl~ 122 (168)
T 1z2a_A 53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA-LVQNKIDLL 122 (168)
T ss_dssp EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEE-EEEECGGGG
T ss_pred EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE-EEEECcccC
Confidence 46899999986321111111223457999998876543 45555555555543 256654 899999863
No 88
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=96.78 E-value=0.0091 Score=56.74 Aligned_cols=137 Identities=20% Similarity=0.216 Sum_probs=84.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCcccccccCCCCCceeecccCCeeEEecCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGF 252 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~~~~~~~~~~~~~i~~~~~~~l~vl~~g~ 252 (370)
.+.|.+++.-.++||||++..|...+.++|+++..+=.-..+ .+.+.. .- ++..
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg----~li~~~-----------~g----------v~~D- 222 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTG----ILIGAD-----------AG----------YVID- 222 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHH----HHTTCS-----------EE----------CCGG-
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCcee----eeeccC-----------CC----------CCCC-
Confidence 678999999999999999999999999999999874422110 111100 00 0000
Q ss_pred CCccccccCCchHHHHHHHHHHhcCCCCCcEEEEcCCCCCCh-----HHHHHhhHhCCCeEEEEecCC-----------c
Q 017486 253 SGQGRAIMRGPMVSGVINQLLTTTEWGELDYLVIDMPPGTGD-----IQLTLCQVVPLTAAVIVTTPQ-----------K 316 (370)
Q Consensus 253 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~yD~VIIDtpp~~~~-----~~l~~~~~~~~d~viiV~~p~-----------~ 316 (370)
....+.....++.++.....++||++||--..++.. ..+.+..-...|.+|+...|. .
T Consensus 223 ------~~~~~~~ag~~e~~i~~~~~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~ 296 (350)
T 2g0t_A 223 ------AVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPK 296 (350)
T ss_dssp ------GSBGGGHHHHHHHHHHHHHHTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSC
T ss_pred ------ceecchhhHHHHhhHHHhhhcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccC
Confidence 011111222333333333137899999999987632 123333344568888877654 2
Q ss_pred -chHHHHHHHHHHHHcCCCCeEEEE-EcC
Q 017486 317 -LAFIDVAKGVRMFSKLKVPCIAVV-ENM 343 (370)
Q Consensus 317 -~s~~~~~~~~~~l~~~~~~~~gvV-~N~ 343 (370)
.+++...++++.|. +.+++|++ +|.
T Consensus 297 ~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 297 KPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp CCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred CcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 45666666666665 78999999 997
No 89
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.70 E-value=0.0018 Score=55.49 Aligned_cols=40 Identities=35% Similarity=0.403 Sum_probs=34.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+++|.++ |..|+||||++..||..+...|.+|.++|.|..
T Consensus 13 ~~~i~l~-G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWLT-GLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4566666 999999999999999999999999999998754
No 90
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.67 E-value=0.011 Score=48.36 Aligned_cols=67 Identities=7% Similarity=-0.045 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCCCCh-------HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~-------~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
...+.|+|+|+.... ..........+|.+++|.+.............+.+.+.+.+++ +|.|+++..
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 121 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI-LVATKVDDP 121 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEE-EEEECCCSG
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEE-EEEECcccc
Confidence 346889999864320 1111122345788998887765322222445566666677754 899999864
No 91
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.67 E-value=0.0053 Score=51.28 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
...+.|+|+|.......+.......+|.+++|...+..........++.+...+.+++ +|.|+++...
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~i-lv~nK~Dl~~ 121 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPII-VAINKMDKPE 121 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEE-EEEETTTSSC
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEE-EEEECccCCc
Confidence 3457788888532211111111234688898887665444455556666666677754 8999998643
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.63 E-value=0.029 Score=47.59 Aligned_cols=68 Identities=10% Similarity=0.060 Sum_probs=42.9
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|.......+....+..+|.+++|..... .++..+...+..+.+ .+.+++ +|.|+++..
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~ 137 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL-VLGNKRDLP 137 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE-EEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEE-EEEECCCCc
Confidence 46789999998532111112222345799999987654 466776666555543 456654 899999864
No 93
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.61 E-value=0.01 Score=51.17 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=42.3
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~v~~~~ 348 (370)
.+.+.|+|+|..-....+....+..+|.+++|...+. .++..+ ...++.+.+. +.+++ +|.|+++...
T Consensus 72 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~ 143 (201)
T 2gco_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-LVGNKKDLRQ 143 (201)
T ss_dssp EEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGGTT
T ss_pred EEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEecHHhhc
Confidence 4678999998632211121222335799998876554 456666 4556666554 66655 9999998743
No 94
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.60 E-value=0.0062 Score=51.92 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=43.5
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHc---CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+.-....+....+..+|.+++|.... ..++..+...++.+.+ .+.+ +-+|.|+++..
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 141 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQ-VILVGNKCDME 141 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 4577999999852211122223344679999988765 4556666777777765 3455 44899999863
No 95
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.59 E-value=0.014 Score=48.71 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++..
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 130 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDLL 130 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 4679999998632211222222445799999987654 4556677777666654 333 45899999864
No 96
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.54 E-value=0.018 Score=48.91 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHcC-----------CCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKL-----------KVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~-----------~~~~~gvV~N~v~~ 346 (370)
..+.+.|+|+|.......+....+..+|.+++|...... ++..+...+..+.+. +.+++ +|.|+++.
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl 139 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL-FFANKMDA 139 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE-EEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEE-EEEECcCC
Confidence 567899999986322222222223457999998877654 577776666665543 66655 89999986
Q ss_pred CC
Q 017486 347 DA 348 (370)
Q Consensus 347 ~~ 348 (370)
..
T Consensus 140 ~~ 141 (199)
T 4bas_A 140 AG 141 (199)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 97
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.53 E-value=0.0044 Score=59.22 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=34.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+.++.|+ +-.|+||||++.++|..++..|.+|++||....
T Consensus 61 G~i~~I~-GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 61 GRIVEIF-GQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 4577777 779999999999999999999999999998753
No 98
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.53 E-value=0.013 Score=49.66 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=29.3
Q ss_pred CCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 305 LTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 305 ~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+|.+++|+..............+.+...+.+++ +|.|+++..
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~ 146 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFT-IVLTKMDKV 146 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGGS
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEE-EEEEChhcC
Confidence 377888887665433444566677777788865 889999864
No 99
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.53 E-value=0.093 Score=42.78 Aligned_cols=69 Identities=9% Similarity=0.001 Sum_probs=43.4
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~~ 348 (370)
..+.+.|+|+|.......+.......+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++...
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 115 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLPN 115 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe-EEEEEECcCCcC
Confidence 45789999998543222222222445799999887654 4566666666555432 455 458999998643
No 100
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.52 E-value=0.01 Score=53.78 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCCCCChHH----------HHHhhH--hCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDIQ----------LTLCQV--VPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~----------l~~~~~--~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
...++.|+|||+...... +....+ ..+|.+++|+.... ......+...+.+.+.|++ +|+||++.
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvi-lv~NK~Dl 122 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVV-VALNMMDI 122 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEE-EEEECHHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 345789999986322110 111112 45799999988766 4555667777878888866 89999985
No 101
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.51 E-value=0.012 Score=49.97 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=43.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc------CCCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~------~~~~~~gvV~N~v~~~~ 348 (370)
..+.+.|+|+|.......+....+..+|.+++|..... .++..+...+..+.+ .+.+++ +|.|+++...
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~ 140 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL-FFANKMDLRD 140 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE-EEEECTTSTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE-EEEeCcCccc
Confidence 35789999999643322222222445799999988665 456666666555543 355655 8999998743
No 102
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.50 E-value=0.033 Score=46.85 Aligned_cols=67 Identities=9% Similarity=0.062 Sum_probs=43.3
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...++.+.. .+.+++ +|.|+++..
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 140 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV-LCGNKSDLE 140 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE-EEEECTTCG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccc
Confidence 5789999998643222233333445799999987654 456666666666554 355654 899999864
No 103
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.49 E-value=0.021 Score=47.41 Aligned_cols=68 Identities=9% Similarity=0.051 Sum_probs=42.1
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+.-.........+..+|.+++|..... .+...+...+..+.. .+.+ +-+|.|+++..
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 133 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLE 133 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 34678999998632222222233446799999887654 345556665555554 3444 45899999863
No 104
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.45 E-value=0.037 Score=45.13 Aligned_cols=67 Identities=15% Similarity=0.114 Sum_probs=40.6
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+.......+|.+++|..... .+...+...+..+.+ .+.+++ +|.|+++..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 121 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI-LVGNKVDLE 121 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE-EEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECCccc
Confidence 4568999998643322222222345688888877554 355555555444432 356654 999999853
No 105
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.43 E-value=0.019 Score=47.29 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=39.6
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+......+.......+|.+++|..... .++..+...++.+.+ .+.++ -+|.|+++..
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~ 124 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICL-CIVGNKIDLE 124 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEE-EEEEECGGGG
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEECcccc
Confidence 34678999998632212222222335688888887654 455666666655544 34454 4899999864
No 106
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.43 E-value=0.014 Score=47.89 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=40.8
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+......+.......+|.+++|..... .++..+...+..+.+ .+.+++ +|.|+++..
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 122 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLE 122 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEE-EEEECGGGG
T ss_pred EEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECcccc
Confidence 34689999999643222222222345699988887654 445555555544443 256655 999999863
No 107
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.42 E-value=0.0032 Score=57.21 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=34.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
++.|.++ |-.|+||||++..|+..|...|..++++|.|..
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4566666 889999999999999999989999998888753
No 108
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.42 E-value=0.0043 Score=61.22 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=42.2
Q ss_pred CCCCcEEEEcCCCCCC-----hH---HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTG-----DI---QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~-----~~---~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|....+.|+|||.-.. .. ......+..+|.+++|++....-...-..+.+.+++.+.+++ +|.|+++..
T Consensus 68 ~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvi-lV~NK~D~~ 144 (456)
T 4dcu_A 68 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDNT 144 (456)
T ss_dssp TCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEE-EEEECC---
T ss_pred ECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEE-EEEECccch
Confidence 3567899999986211 11 111222335799999988665333444567788888888866 899999864
No 109
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.41 E-value=0.023 Score=48.79 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|..-....+....+..+|.+++|.... ..++..+...+..+.+. +.+++ +|.|+++..
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 142 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV-LVGNKADLS 142 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEE-EEEECTTCG
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccCc
Confidence 4678899999863221112222234579888888765 44566777777776554 55654 899999853
No 110
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.02 Score=48.77 Aligned_cols=68 Identities=22% Similarity=0.213 Sum_probs=43.3
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|............+..+|.+++|..... .+...+...+..+.+. +.+ +-+|.|+++..
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~ 141 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDLS 141 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccc
Confidence 45679999998632212222222445799998887644 4566677777666654 444 45899999864
No 111
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.33 E-value=0.036 Score=46.07 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=37.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc-------CCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~v~~ 346 (370)
..+.+.|+|+|+...........+..+|.+++|..... .++..+...++.+.. .+.+++ +|.|+++.
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl 130 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV-ILGNKIDA 130 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEE-EEEECTTS
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEE-EEEECCcc
Confidence 35678999998632222222222335799999887654 345555555554432 355554 89999986
No 112
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.014 Score=48.05 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=42.4
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC-----CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+......+....+..+|.+++|..... .+...+...++.+.+. +.+++ +|.|+++..
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii-~v~nK~Dl~ 122 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIM-LVGNKCDES 122 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEE-EEEECGGGG
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEE-EEEEccccc
Confidence 34679999999644322332223445799998887654 3455555555555442 56654 899999863
No 113
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.31 E-value=0.019 Score=48.08 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+....+..+|.+++|..... .++..+...+..+.+ .+.+++ +|.|+++..
T Consensus 65 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 136 (187)
T 2a9k_A 65 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLE 136 (187)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEE-EEEECGGGG
T ss_pred EEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccc
Confidence 4689999999643322232222445799998887654 345555555444433 356655 899999863
No 114
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.31 E-value=0.053 Score=45.81 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=41.3
Q ss_pred CcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHc-CCCCeEEEEEcCCc
Q 017486 281 LDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK-LKVPCIAVVENMCH 345 (370)
Q Consensus 281 yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~-~~~~~~gvV~N~v~ 345 (370)
+.+.|+|+|+...........+..+|.+++|...... +...+...+..+.+ .+ ..+-+|+|+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC
Confidence 7899999996321111222224457999999887654 45666666666654 45 44559999999
No 115
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.27 E-value=0.024 Score=46.90 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=40.7
Q ss_pred CCcEEEEcCCCCCC--hHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC----CCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPGTG--DIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~~~--~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~~ 348 (370)
.+.+.++|+|.... ...+.......+|.+++|...+ ..++..+...+..+.+. +.+++ +|.|+++...
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pii-lv~NK~Dl~~ 125 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPII-LVGNKADLAR 125 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEE-EEEECTTCTT
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEE-EEEEChhhcc
Confidence 45789999985322 1122222233468888887654 45667777777666654 56655 8999998743
No 116
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.27 E-value=0.014 Score=48.13 Aligned_cols=66 Identities=9% Similarity=0.101 Sum_probs=39.9
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~ 346 (370)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.+. +.+ +-+|.|+++.
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl 120 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDM 120 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred EEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECccC
Confidence 4678999998632111111112334688888887654 3556666666665543 444 4589999986
No 117
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.24 E-value=0.029 Score=47.99 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .++..+...+..+.. .+.++ -+|.|+++..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl~ 126 (203)
T 1zbd_A 56 RIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV-LLVGNKCDME 126 (203)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEE-EEEEECTTCT
T ss_pred EEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECcccC
Confidence 4678999998533222232333445799999888654 456666666666655 24554 4899999864
No 118
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.23 E-value=0.027 Score=48.76 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=31.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
++++.++ |.-|.||||.+..+|..+..+|++|+++-
T Consensus 8 g~i~v~~-G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIV-GPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3555555 88899999999999999999999999985
No 119
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.20 E-value=0.024 Score=55.55 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=47.7
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchH-------HHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
..+.+.|+|||. ..+.. .....+..+|.+++|+.+..... .+..+.+..+...+++.+-+|+|+++.
T Consensus 93 ~~~~~~iiDTPG-h~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPG-HKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCC-hHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 567899999985 44322 22233445799999998876543 356677777778899856689999996
No 120
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.18 E-value=0.035 Score=47.37 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=42.0
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .++..+...+..+.+ .+.+++ +|.|+++..
T Consensus 61 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 132 (206)
T 2bov_A 61 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL-LVGNKSDLE 132 (206)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE-EEEECTTCG
T ss_pred EEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEeccCcc
Confidence 4678999999643322232222345688888887654 455566555555543 256655 999999864
No 121
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.14 E-value=0.019 Score=48.71 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+....+..+|.+++|..... .++..+...+..+.+. +.++ -+|.|+++..
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ilv~nK~Dl~ 134 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK-LLVGNKCDLT 134 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTCT
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECcccc
Confidence 3678999999632211222222445799999887654 4455666666666543 4454 4899999864
No 122
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.13 E-value=0.046 Score=46.53 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=41.8
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.++|+|.......+.......+|.+++|...... ++..+...+..+.+ .+.++ -+|.|+++..
T Consensus 66 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl~ 137 (190)
T 1m2o_B 66 NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF-VILGNKIDAP 137 (190)
T ss_dssp TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE-EEEEECTTST
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCE-EEEEECCCCc
Confidence 46789999985322111111223357999998876554 57777766655543 35665 4899999864
No 123
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.12 E-value=0.0044 Score=52.74 Aligned_cols=37 Identities=32% Similarity=0.331 Sum_probs=32.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+.|.|. |-.|+||||++..|+..+...|+++..++.|
T Consensus 2 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVT-GIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 466666 8899999999999999999889999999754
No 124
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.08 E-value=0.022 Score=49.25 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=42.3
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+.......+|.+++|...+. .++..+ ...++.+.+. +.+++ +|.|+++..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 142 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII-LVANKKDLR 142 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEchhhh
Confidence 4678999998642211222222345799998887654 456666 4556666554 66655 999999864
No 125
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.07 E-value=0.028 Score=55.01 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=49.5
Q ss_pred CCCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHH-------HHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 278 WGELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~-------~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+..+.+.|+|||. ..+. ......+..+|.+++|+.....+++ ++++.+..+...+++.+-+++|+++...
T Consensus 81 ~~~~~~~iiDtpG-~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 81 TKKYFFTIIDAPG-HRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp CSSCEEEECCCSS-STTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred cCCeEEEEEECCC-cHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 4678899999985 4433 2333334468999999998876554 5566677777778765568999998643
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.03 E-value=0.013 Score=57.45 Aligned_cols=69 Identities=12% Similarity=0.096 Sum_probs=39.3
Q ss_pred CCCCcEEEEcCCCCCC-------h-HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTG-------D-IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~-------~-~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|...++.|+|||+... . .......+..+|.+++|++....-...-..+.+.+++.+.+++ +|.|+++..
T Consensus 48 ~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvi-lv~NK~D~~ 124 (436)
T 2hjg_A 48 WLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVV-LAVNKLDNT 124 (436)
T ss_dssp TCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEE-EEEECCCC-
T ss_pred ECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccCc
Confidence 3566899999986321 0 1112222345799999887654211222456677777788765 899999964
No 127
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.03 E-value=0.0095 Score=50.90 Aligned_cols=42 Identities=24% Similarity=0.352 Sum_probs=36.1
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
|+++++|+ +..|+||||+...|...+...|++|..+..|+..
T Consensus 5 ~~~~i~i~-G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred cceEEEEE-eCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 45678777 6889999999999999999999999999988754
No 128
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.03 E-value=0.0075 Score=53.49 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=34.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.++.++ +.+|+||||++.++|..++..|.+|++++.+..
T Consensus 24 ~~~~i~-G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 24 NVVLLS-GGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 466666 889999999999999999999999999999864
No 129
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.98 E-value=0.036 Score=47.56 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=42.7
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~~ 348 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++...
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (206)
T 2bcg_Y 56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVL-KLLVGNKCDLKD 127 (206)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 4679999998633211122222445799999988654 4566666666666543 344 458999998743
No 130
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.98 E-value=0.022 Score=52.93 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=25.6
Q ss_pred CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 304 PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 304 ~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.+|.+++|......+ .....+++.+.+.+.|++ +|+|+++..
T Consensus 88 ~~D~vl~Vvd~~~~~-~~~~~i~~~l~~~~~P~i-lvlNK~D~~ 129 (301)
T 1ega_A 88 DVELVIFVVEGTRWT-PDDEMVLNKLREGKAPVI-LAVNKVDNV 129 (301)
T ss_dssp CEEEEEEEEETTCCC-HHHHHHHHHHHSSSSCEE-EEEESTTTC
T ss_pred cCCEEEEEEeCCCCC-HHHHHHHHHHHhcCCCEE-EEEECcccC
Confidence 357777777654432 223455666666677765 677888764
No 131
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.96 E-value=0.079 Score=45.08 Aligned_cols=69 Identities=10% Similarity=0.018 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~~ 348 (370)
..+.+.|+|+|.......+....+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++...
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~ 144 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV-LLVFANKQDMPN 144 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCe-EEEEEECCCCCC
Confidence 45789999998632211111122445799999887654 4567776666555432 455 458999998643
No 132
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.95 E-value=0.025 Score=56.13 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=47.1
Q ss_pred CCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcch-------HHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||. ..+. ......+..+|.+++|+...... .......+..+...+++.+-+|+|+++..
T Consensus 109 ~~~~~~iiDTPG-~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~ 184 (483)
T 3p26_A 109 HRANFTIVDAPG-HRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 184 (483)
T ss_dssp SSCEEEEECCCC-CGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred CCceEEEEECCC-cHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence 568899999984 4432 23333355689999999887642 24566667777777877566999999864
No 133
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.059 Score=45.85 Aligned_cols=67 Identities=15% Similarity=0.077 Sum_probs=42.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|.... ..........+|.+++|..... .++..+...+..+.+ .+.+++ +|.|+++..
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~ 145 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI-LVGNKADLD 145 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE-EEEECGGGG
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE-EEEECcccc
Confidence 346789999986443 2222222445699999887654 455666555555543 356655 999999864
No 134
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.031 Score=47.46 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=41.4
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc-----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~-----~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+......+....+..+|.+++|...+. .++..+...++.+.+ .+.++ -+|.|+++..
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi-ilv~nK~Dl~ 127 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV-MLVGNKCDET 127 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE-EEEEECTTCS
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccCC
Confidence 34678999998633222222222345699998887654 355555555554443 25564 4899999864
No 135
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.93 E-value=0.024 Score=47.47 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHH----cCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS----KLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~----~~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+.......+|.+++|..... .++..+...+..+. ..+.+++ +|.|+++..
T Consensus 53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 124 (181)
T 3t5g_A 53 EYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIM-LVGNKKDLH 124 (181)
T ss_dssp EEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEE-EEEECTTCT
T ss_pred EEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccch
Confidence 4678999998632211111112334688888876654 45555555554443 2356655 899999863
No 136
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.91 E-value=0.047 Score=44.64 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=41.4
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+......+.......+|.+++|..... .++..+...++.+.+ .+.+++ +|.|+++..
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 121 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI-LVGNKCDLE 121 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEE-EEEECTTCG
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEE-EEEECcccc
Confidence 45678999998643222222222344688888886554 455555555554443 366655 899999863
No 137
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.91 E-value=0.0096 Score=51.68 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=35.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+.+|+++ |..|+||||++..|+..+...|.+|.+++.|...
T Consensus 22 ~~~i~i~-G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 22 RLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 3577777 8899999999999999998888899999888654
No 138
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.90 E-value=0.064 Score=55.88 Aligned_cols=68 Identities=22% Similarity=0.048 Sum_probs=51.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.|-+=|||||.-.+...-....+..+|++|+|+.+..--..+++..++.+.+.+++.+ +++||.+..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i-~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRI-VYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEE-EEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeE-EEEcccccc
Confidence 35667799999533322222333556799999999888777889999999999999976 889999963
No 139
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.12 Score=43.39 Aligned_cols=67 Identities=7% Similarity=-0.019 Sum_probs=42.1
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+.......+|.+++|...... ++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 130 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVK 130 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCE-EEEEEECTTST
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCe-EEEEEECCCCc
Confidence 46789999986422111222224457999999876554 57777777666654 2455 45899999864
No 140
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.88 E-value=0.038 Score=47.30 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .+...+...++.+.+. +.+++ +|.|+++..
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pii-lv~NK~Dl~ 146 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIM-LVGNKADIR 146 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEE-EEEECGGGH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEE-EEEECcccc
Confidence 4678999998643322232222445799999987653 4556666666666543 56654 899999863
No 141
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.86 E-value=0.0089 Score=52.21 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=33.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.++|+|+ |.+|+||||+..+|+..+... +++.+|+.|+.
T Consensus 30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 30 TVAVNIM-GAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 3577777 799999999999999988655 89999999985
No 142
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.83 E-value=0.067 Score=43.84 Aligned_cols=68 Identities=21% Similarity=0.155 Sum_probs=42.0
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcCCC--CeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLKV--PCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~~--~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...++.+.+.+. ..+-+|.|+++..
T Consensus 54 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1z0j_A 54 LHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT 124 (170)
T ss_dssp EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred EEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence 4678999998532211222222345798888887654 456666667666665422 2355788999864
No 143
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.82 E-value=0.042 Score=47.19 Aligned_cols=67 Identities=7% Similarity=0.124 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+++.++|+|+......+.......+|.+++|..... .++..+...+..+.+ .+.|++ +|.|+++..
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~ 139 (198)
T 1f6b_A 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPIL-ILGNKIDRP 139 (198)
T ss_dssp TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEE-EEEECTTST
T ss_pred CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE-EEEECCCcc
Confidence 4678999998632211111122335799999887654 467777666665543 356654 899999864
No 144
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.81 E-value=0.0098 Score=61.28 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=53.5
Q ss_pred CCCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 278 WGELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 278 ~~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
|++|.+=|||||.-.+...-....+..+|++++|+.+..--..+++..++.+.+.+++++ +++||.+..
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~ 132 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQN 132 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSS
T ss_pred ECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccc
Confidence 678889999999533322333344667899999999877666778999999999999986 789999864
No 145
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.81 E-value=0.078 Score=44.71 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCCCChHH--HHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQ--LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~--l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|. ..... +....+..+|.+++|..... .++..+...++.+.+ .+.+++ +|.|+++..
T Consensus 68 ~~~~~l~Dt~G-~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 140 (189)
T 1z06_A 68 RIKIQLWDTAG-QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDLR 140 (189)
T ss_dssp EEEEEEEECCC-SHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEE-EEEECTTCG
T ss_pred EEEEEEEECCC-chhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccc
Confidence 46799999985 32221 11222345799999987654 345555555544432 356654 899999863
No 146
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.80 E-value=0.058 Score=49.23 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=42.5
Q ss_pred CCCcEEEEcCCCCCChH----------HH--HHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDI----------QL--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~----------~l--~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
..+.+.|+|||+..... .+ .......+|.+++|+.... ..........+.+.+.|++ +|+||++.
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~i-vv~NK~Dl 124 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCI-VALNMLDI 124 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEE-EEEECHHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEE-EEEECccc
Confidence 45678999998632211 11 1111236799999988765 4455566677777788866 89999985
No 147
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.79 E-value=0.081 Score=43.44 Aligned_cols=68 Identities=15% Similarity=0.045 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~~ 348 (370)
.+.+.|+|+|............+..+|.+++|..... .++......+..+.+ .+.+ +-+|.|+++...
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 122 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI-LVVFANKQDMEQ 122 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCE-EEEEEECCCCcC
Confidence 4678999998532211222222335799999887654 356666665555443 3555 459999998643
No 148
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.79 E-value=0.095 Score=44.06 Aligned_cols=69 Identities=10% Similarity=0.024 Sum_probs=42.6
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHH-c---CCCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFS-K---LKVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~-~---~~~~~~gvV~N~v~~~~ 348 (370)
..+.+.++|+|...............+|.+++|..... .++..+...+..+. . .+.+++ +|.|+++...
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~NK~Dl~~ 131 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL-IFANKQDLLT 131 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEE-EEEECTTSTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEE-EEEECcCccc
Confidence 35678999998532222222222446799999887654 46666666555442 2 355654 8999998643
No 149
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.76 E-value=0.031 Score=47.44 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|..-....+....+..+|.+++|..... .+...+...+..+.+. +.+ +-+|.|+++..
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 139 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLE 139 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECcccC
Confidence 4678999998632111111122345799999887654 4566666666666543 444 44899999863
No 150
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.74 E-value=0.072 Score=43.57 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=41.8
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.+. +.+ +-+|.|+++..
T Consensus 51 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 121 (170)
T 1ek0_A 51 TVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKIDXL 121 (170)
T ss_dssp EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcc
Confidence 4578999998633222222222445799999887654 3566666666555532 344 45899999864
No 151
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.73 E-value=0.042 Score=57.10 Aligned_cols=65 Identities=14% Similarity=0.054 Sum_probs=41.6
Q ss_pred CcEEEEcCCCCCCh----HHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGD----IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~----~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+++.|||||+ ..+ .......+..+|.+++|+.++.. +..+...+.+.+...+.+ +-+|+|+++..
T Consensus 174 ~~l~LiDTPG-l~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPG-LNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCC-HHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGGG
T ss_pred CCeEEEECCC-CCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECcccc
Confidence 6899999985 322 12222334457999999987543 444444444556666777 55899999853
No 152
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.71 E-value=0.048 Score=45.60 Aligned_cols=67 Identities=15% Similarity=0.039 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHH----cCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFS----KLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~----~~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+....+..+|.+++|...... ++..+...+..+. ..+.+++ +|.|+++..
T Consensus 65 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 136 (183)
T 3kkq_A 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI-LVANKVDLM 136 (183)
T ss_dssp EEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEE-EEEECTTCS
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECCCch
Confidence 34567799986321111111123346999988876543 4555555554443 3466655 899999864
No 153
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.69 E-value=0.047 Score=55.66 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=44.6
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..|.+.|+|||. ..+.. .....+..+|.+++|+........+....+..+...+++++ +|+|+++..
T Consensus 71 ~~~~inliDTPG-h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiI-vviNKiDl~ 138 (600)
T 2ywe_A 71 NTYKLHLIDTPG-HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVII-PVINKIDLP 138 (600)
T ss_dssp CEEEEEEECCCC-SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEE-EEEECTTST
T ss_pred CeEEEEEEECCC-cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEE-EEEeccCcc
Confidence 347888999985 44332 22233556899999998766433344455555556788854 899999964
No 154
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.68 E-value=0.03 Score=48.18 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~ 346 (370)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl 137 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQ-LLLVGNKSDM 137 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSE-EEEEEECTTC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 3679999998632111111122345799999888654 3555666666655543 444 4589999986
No 155
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.66 E-value=0.034 Score=47.38 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .+...+...++.+... +.+ +-+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~ 144 (192)
T 2il1_A 74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAE-LLLVGNKLDCE 144 (192)
T ss_dssp EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 4679999998643222222222445799999987654 4566666666666543 444 45899999864
No 156
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.66 E-value=0.055 Score=52.90 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCCh---------HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGD---------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~---------~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
....+.|+|||+-... .......+..+|.+++|++....-...-..+.+++++.+.+++ +|.|+++.
T Consensus 47 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~i-lv~NK~D~ 122 (439)
T 1mky_A 47 YGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTI-LVANKAEN 122 (439)
T ss_dssp TTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEE-EEEESCCS
T ss_pred CCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEeCCCC
Confidence 4456889999863210 1122223456899999987643211122345566666677765 89999985
No 157
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.64 E-value=0.018 Score=51.80 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=36.8
Q ss_pred CCCcEEEEcCCCCCCh-----H------HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcC-----CCCeEEEEEc
Q 017486 279 GELDYLVIDMPPGTGD-----I------QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL-----KVPCIAVVEN 342 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~-----~------~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~-----~~~~~gvV~N 342 (370)
..++++|+|||+-... . ......+..+|.+++|.......- .....++.+.+. +.+.+-+|-|
T Consensus 69 ~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~i~vv~n 147 (260)
T 2xtp_A 69 GNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTS-QDQQAAQRVKEIFGEDAMGHTIVLFTH 147 (260)
T ss_dssp TTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCH-HHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred CCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCH-HHHHHHHHHHHHhCchhhccEEEEEEc
Confidence 4568999999962210 0 011112234799999998875221 223333444433 4555544545
Q ss_pred CCccC
Q 017486 343 MCHFD 347 (370)
Q Consensus 343 ~v~~~ 347 (370)
+++..
T Consensus 148 K~Dl~ 152 (260)
T 2xtp_A 148 KEDLN 152 (260)
T ss_dssp GGGGT
T ss_pred ccccC
Confidence 98864
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.63 E-value=0.013 Score=51.25 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+.+++++ |..|+||||++..++..++..|.+|++++.+..
T Consensus 23 G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 23 GFFIALT-GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp TCEEEEE-CSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 3477776 999999999999999988888889999998763
No 159
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.62 E-value=0.0056 Score=56.72 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=32.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
..+|+++ |-.|+||||+|..|+..+...|.++.+||+|-..
T Consensus 5 ~~iIgIt-G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3578888 8899999999999999998778899999999754
No 160
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.62 E-value=0.04 Score=47.72 Aligned_cols=67 Identities=7% Similarity=0.017 Sum_probs=37.1
Q ss_pred CCcEEEEcCCCCCChH-HHHHhhHhC----CCeEEEEecCC--cchHHHHHHHHHHH-Hc------CCCCeEEEEEcCCc
Q 017486 280 ELDYLVIDMPPGTGDI-QLTLCQVVP----LTAAVIVTTPQ--KLAFIDVAKGVRMF-SK------LKVPCIAVVENMCH 345 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~-~l~~~~~~~----~d~viiV~~p~--~~s~~~~~~~~~~l-~~------~~~~~~gvV~N~v~ 345 (370)
.+++.|+|+|+ .... ......+.. +|.+++|.... ..++..+.+.+..+ .. .+.+++ +|.|+++
T Consensus 54 ~~~~~l~Dt~G-~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D 131 (218)
T 1nrj_B 54 GSGVTLVDFPG-HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL-IACNKSE 131 (218)
T ss_dssp GSSCEEEECCC-CGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEE-EEEECTT
T ss_pred CceEEEEECCC-cHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEE-EEEEchH
Confidence 46799999985 3322 111111111 58888887765 23444444433333 21 356654 8999998
Q ss_pred cCC
Q 017486 346 FDA 348 (370)
Q Consensus 346 ~~~ 348 (370)
...
T Consensus 132 l~~ 134 (218)
T 1nrj_B 132 LFT 134 (218)
T ss_dssp STT
T ss_pred hcc
Confidence 643
No 161
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.59 E-value=0.094 Score=43.80 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+....+..+|.+++|..... .++..+...+..+.+ .+.+++ +|.|+++..
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~ 122 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV-LVGNKCDLP 122 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEE-EEEECTTSS
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE-EEEECccCc
Confidence 3567889998632211111122334688888876654 455566666555544 356654 899999864
No 162
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.57 E-value=0.032 Score=57.74 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=47.5
Q ss_pred CCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||. ..+. ......+..+|.+++|..+...-.....+.+..+.+.+++++ +|+|+++..
T Consensus 72 ~~~~~nliDTpG-~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~~ 139 (665)
T 2dy1_A 72 RGHRVFLLDAPG-YGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDKG 139 (665)
T ss_dssp TTEEEEEEECCC-SGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGGC
T ss_pred CCEEEEEEeCCC-ccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCchh
Confidence 457789999985 4332 222333445799999988766555566777888888888877 789999864
No 163
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.56 E-value=0.019 Score=53.91 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=31.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC--CCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~--G~rVllID~D~~ 213 (370)
++.+. +-.|+||||++.+++..+++. |.+|+.||+.-.
T Consensus 30 iteI~-G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 30 LLILA-GPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEE-ESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 44444 889999999999999999876 889999998653
No 164
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.55 E-value=0.012 Score=51.20 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=30.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+++++ +.+|+||||++.++|. ..|.+|+++|.+.
T Consensus 21 ~~~~i~-G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVY-GPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred EEEEEE-CCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 466666 9999999999999998 5688999999986
No 165
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=95.54 E-value=0.043 Score=55.20 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=39.8
Q ss_pred CCeEEEEE-eCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 172 ISNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 172 ~~kvI~v~-S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
|+|.|.|+ +.-.++||+++++.|+..|.++|+||..+=.||+-
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~py~ 54 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYV 54 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSS
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeeccccc
Confidence 67899999 88889999999999999999999999999998764
No 166
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.53 E-value=0.015 Score=54.38 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=34.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.++.++ +.+|+||||++.++|..++..|.+|+++.+...
T Consensus 69 ~l~li~-G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s 107 (315)
T 3bh0_A 69 NFVLIA-ARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 107 (315)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 355555 999999999999999999999999999999853
No 167
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.53 E-value=0.089 Score=43.50 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc-------CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+..............+|.+++|..... .+...+...++.+.. .+.+++ +|.|+++..
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~ 129 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV-ILGNKIDIS 129 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEE-EEEECTTCS
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEE-EEEECCccc
Confidence 3679999998633222222222345788888876554 345555555544432 355654 899999864
No 168
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.50 E-value=0.0098 Score=53.59 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-----CCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-----MGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~-----~G~rVllID~D~~~ 214 (370)
+.+|+++ |-.|+||||+|..||..|.. .+++|.++|+|-..
T Consensus 22 ~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 4578877 99999999999999987753 36789999998543
No 169
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.032 Score=47.16 Aligned_cols=68 Identities=10% Similarity=0.062 Sum_probs=42.6
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|.......+....+..+|.+++|..... .+...+...+..+.+. +.+ +-+|.|+++..
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~ 134 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIV-NMLVGNKIDKE 134 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCE-EEEEEECTTSS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEEECCcCc
Confidence 34679999998632211122222445799999887654 4556666666666653 333 45899999863
No 170
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.47 E-value=0.015 Score=49.15 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
++.|+++ |-.|+||||++..|+..+...|.+++.+|.|.-.
T Consensus 5 g~~i~l~-G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH
Confidence 4577777 9999999999999999998789999999977544
No 171
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.47 E-value=0.037 Score=47.33 Aligned_cols=68 Identities=13% Similarity=0.063 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc-------CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK-------LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+......+....+..+|.+++|..... .++..+...+..+.. .+.+++ +|.|+++..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 130 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV-VLGNKIDLE 130 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEE-EEEECTTSS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEE-EEEECCCCc
Confidence 34679999998632111111122335799999987654 445555555544432 255554 899999864
No 172
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.47 E-value=0.09 Score=46.06 Aligned_cols=68 Identities=9% Similarity=-0.019 Sum_probs=39.9
Q ss_pred CCCcEEEEcCCCCCC----hH----HHHHhh-HhCCCeEEEEecCCcc---hHHHHHHHHHHHHcC--CCCeEEEEEcCC
Q 017486 279 GELDYLVIDMPPGTG----DI----QLTLCQ-VVPLTAAVIVTTPQKL---AFIDVAKGVRMFSKL--KVPCIAVVENMC 344 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~----~~----~l~~~~-~~~~d~viiV~~p~~~---s~~~~~~~~~~l~~~--~~~~~gvV~N~v 344 (370)
..+.+.|+|||+... +. ...... ...+|.+++|...... ........+..+... +.+++ +|.|++
T Consensus 74 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pii-lv~nK~ 152 (228)
T 2qu8_A 74 KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIV-IGFNKI 152 (228)
T ss_dssp TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEE-EEEECG
T ss_pred CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEE-EEEeCc
Confidence 346789999986421 10 111111 2345788888776542 233445566666665 66654 899999
Q ss_pred ccC
Q 017486 345 HFD 347 (370)
Q Consensus 345 ~~~ 347 (370)
+..
T Consensus 153 Dl~ 155 (228)
T 2qu8_A 153 DKC 155 (228)
T ss_dssp GGC
T ss_pred ccC
Confidence 864
No 173
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.46 E-value=0.09 Score=44.05 Aligned_cols=68 Identities=7% Similarity=-0.019 Sum_probs=42.6
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|.......+....+..+|.+++|..... .++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 135 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDVK 135 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCcc
Confidence 34679999998632211122222445799999887654 367777666655543 3444 45899999864
No 174
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.46 E-value=0.054 Score=44.31 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcCC--CCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~~--~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+..............+|.+++|..... .++..+...+..+.+.. ...+-+|.|+++..
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~ 124 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 35679999998632222222222445799999887654 45666666666665432 12344778999863
No 175
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.40 E-value=0.067 Score=45.19 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=26.4
Q ss_pred CeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 306 TAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 306 d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
|.+++|.......-..-..+++.+...+.+++ +|.|+++...
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i-~v~nK~Dl~~ 148 (195)
T 1svi_A 107 KAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVI-VIATKADKIP 148 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCEE-EEEECGGGSC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECcccCC
Confidence 77787776554222222345666666777755 8999988643
No 176
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.35 E-value=0.096 Score=43.76 Aligned_cols=67 Identities=10% Similarity=0.003 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+...........+..+|.+++|..... .+...+...+..+.. .+.+ +-+|.|+++..
T Consensus 58 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 128 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIV-IILCGNKKDLD 128 (186)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 3578999998633222222222345799999887654 355555555555543 3444 45899999863
No 177
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.04 Score=46.62 Aligned_cols=67 Identities=7% Similarity=0.019 Sum_probs=37.2
Q ss_pred CCcEEEEcCCCCCC---hHHHHHhh-HhCCCeEEEEecCC--cchHHHHHHHHHHHHc-------CCCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTG---DIQLTLCQ-VVPLTAAVIVTTPQ--KLAFIDVAKGVRMFSK-------LKVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~---~~~l~~~~-~~~~d~viiV~~p~--~~s~~~~~~~~~~l~~-------~~~~~~gvV~N~v~~ 346 (370)
.+.+.|+|+|+... .....+.. ...+|.+++|.... ..++..+...+..+.. .+.+++ +|.|+++.
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl 168 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL-IACNKSEL 168 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEE-EEEECTTS
T ss_pred CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEE-EEEEchHh
Confidence 56788999985321 11111111 11258888888775 3445554444333321 356654 89999986
Q ss_pred C
Q 017486 347 D 347 (370)
Q Consensus 347 ~ 347 (370)
.
T Consensus 169 ~ 169 (193)
T 2ged_A 169 F 169 (193)
T ss_dssp T
T ss_pred c
Confidence 4
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.31 E-value=0.019 Score=49.64 Aligned_cols=42 Identities=31% Similarity=0.293 Sum_probs=35.3
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+.+|+++ |..|+||||++..||..+...|..+..+|.|...
T Consensus 24 ~g~~i~l~-G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 24 KGCVIWVT-GLSGSGKSTLACALNQMLYQKGKLCYILDGDNVR 65 (200)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEecCchhh
Confidence 45678877 9999999999999999998778877888987544
No 179
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.30 E-value=0.099 Score=43.24 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=39.6
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHH----HcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMF----SKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l----~~~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .++..+...+..+ ...+.+++ +|.|+++..
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 127 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV-LVGNKADLE 127 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE-EEEECGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECcccc
Confidence 3678899998632211111111334688888887655 3555555554444 23466655 999999863
No 180
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.30 E-value=0.072 Score=47.77 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=38.2
Q ss_pred CCCcEEEEcCCCCCChH---------HHHHh---hHhCCCeEEEEecCCcchHHHHHHHHHHHHcC------CCCeEEEE
Q 017486 279 GELDYLVIDMPPGTGDI---------QLTLC---QVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKL------KVPCIAVV 340 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~---------~l~~~---~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~------~~~~~gvV 340 (370)
....++|+|||+-.... .+..+ ....+|.+++|+..+.... ....+++.+.+. +.+ +-+|
T Consensus 68 ~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~-iilv 145 (247)
T 3lxw_A 68 DKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWM-VIVF 145 (247)
T ss_dssp TTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGE-EEEE
T ss_pred CCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccE-EEEE
Confidence 45679999999632110 01000 1145789999998775433 233444444432 344 4588
Q ss_pred EcCCccC
Q 017486 341 ENMCHFD 347 (370)
Q Consensus 341 ~N~v~~~ 347 (370)
.|+.+..
T Consensus 146 ~nK~Dl~ 152 (247)
T 3lxw_A 146 TRKEDLA 152 (247)
T ss_dssp ECGGGGT
T ss_pred EchHhcC
Confidence 9998864
No 181
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.29 E-value=0.075 Score=47.06 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLA 195 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA 195 (370)
..|++. |..|+||||+.-.|.
T Consensus 30 ~~i~lv-G~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLV-GKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHc
Confidence 467777 999999999986664
No 182
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.075 Score=46.38 Aligned_cols=67 Identities=12% Similarity=0.101 Sum_probs=40.5
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|..-....+....+..+|.+++|..... .++..+...+..+... +.+ +-+|.|+++..
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 131 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDLA 131 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECcccc
Confidence 3678999998632211122222345788998887654 4566666666666543 444 45899999863
No 183
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=95.25 E-value=0.018 Score=57.92 Aligned_cols=43 Identities=30% Similarity=0.383 Sum_probs=39.1
Q ss_pred CeEEEEE-eCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCC
Q 017486 173 SNIVAVS-SCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (370)
Q Consensus 173 ~kvI~v~-S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~ 215 (370)
+|.|.|+ +.-.++|||++++.|+..|+++|+||..+=+||+-+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~n 46 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYIN 46 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSC
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeecccccc
Confidence 4789999 888999999999999999999999999999987653
No 184
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.25 E-value=0.035 Score=46.13 Aligned_cols=67 Identities=12% Similarity=0.048 Sum_probs=40.5
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+.-.........+..+|.+++|..... .+...+...+..+.+. +.+ +-+|.|+++..
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 126 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVC-RILVGNKNDDP 126 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSE-EEEEEECTTCG
T ss_pred EEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC-EEEEEECCCCc
Confidence 3678999998632111111122345688888887654 4566666666666543 344 44899999853
No 185
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.24 E-value=0.019 Score=56.54 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=34.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
..+.++ +.+|+||||++.++|...+..|.+|+++.+....
T Consensus 198 ~liiIa-G~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 198 NFVLIA-ARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp CEEEEE-ECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred cEEEEE-eCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 355554 9999999999999999999989999999998754
No 186
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.23 E-value=0.019 Score=54.37 Aligned_cols=39 Identities=15% Similarity=0.397 Sum_probs=34.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
..+.++ +.+|+||||++.++|..++..|.+|+++.+...
T Consensus 47 ~LiiIa-G~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 47 SLVIIG-ARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS 85 (338)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 355554 999999999999999999999999999999864
No 187
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.21 E-value=0.097 Score=44.27 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHc------CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK------LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~------~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|.......+. ..+..+|.+++|...+ ..++..+...+..+.+ .+.+++ +|.|+++..
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii-lv~nK~Dl~ 140 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNCE-RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL-LLGNKLDMA 140 (187)
T ss_dssp EEEEEEEEECCC---CCCTH-HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EEEECGGGG
T ss_pred EEEEEEEEECCCCCcchhHH-HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEE-EEEECcchh
Confidence 34678899998632111111 1234568888887765 4466777666666654 366655 999999863
No 188
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.19 E-value=0.051 Score=44.99 Aligned_cols=67 Identities=18% Similarity=0.094 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+...........+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 132 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI-IMLVGNKTDLS 132 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 4678999998632211121222345799999887754 455566666555543 2455 44899999863
No 189
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.18 E-value=0.017 Score=50.47 Aligned_cols=41 Identities=24% Similarity=0.186 Sum_probs=34.7
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~ 213 (370)
.+++|.+. |-.|+||||++..|+..+. ..|.++..+|.|..
T Consensus 24 ~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34677777 8999999999999999998 77999999997653
No 190
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.16 E-value=0.058 Score=44.32 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=39.2
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
..+.+.++|+|+...... +.......+|.+++|...+. .++..+...+..+.+. +.+++ +|.|+++..
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 122 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDLA 122 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTCG
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEE-EEeeCcchh
Confidence 346788999986432111 11111234688888877654 4555666665555442 56655 899999863
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.14 E-value=0.023 Score=48.98 Aligned_cols=37 Identities=22% Similarity=0.120 Sum_probs=31.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+.+.++ |..|+||||++..++..+...|.+++.+++.
T Consensus 55 ~~~~l~-G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLH-GSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 356666 8999999999999999999889999988764
No 192
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=95.13 E-value=0.21 Score=46.79 Aligned_cols=68 Identities=9% Similarity=0.031 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHH-HcC---CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMF-SKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l-~~~---~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||..-....+....+..+|.+++|.... ..++..+...+..+ ... +++ +-+|.|+++..
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~ 279 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV-LLVFANKQDLP 279 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe-EEEEEECccCC
Confidence 4578999999963221111112233568888888764 45566666554444 332 455 44899999964
No 193
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.13 E-value=0.11 Score=44.83 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|..-....+....+..+|.+++|..... .++..+...++.+.+. +.+ +-+|.|+++..
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~ 144 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKIDLA 144 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 4678999998633222222233445799999887654 4555566666666543 344 44899999863
No 194
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.06 E-value=0.042 Score=45.92 Aligned_cols=68 Identities=13% Similarity=0.059 Sum_probs=41.4
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+......+.......+|.+++|..... .++..+. ..+..+.+. +.+++ +|.|+++..
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 122 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLR 122 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEE-EEEECHHHH
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEE-EEeEccccc
Confidence 34678899998532211121122335799998887654 4566665 455666543 66654 899999863
No 195
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.03 E-value=0.057 Score=45.46 Aligned_cols=68 Identities=9% Similarity=-0.006 Sum_probs=40.2
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|.......+.......+|.+++|..... .++..+ ...++.+.+. +.+ +-+|.|+++..
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 124 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 124 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEEcchhh
Confidence 34678999998532111111122345788888887654 455555 4455555542 455 45899999864
No 196
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.02 E-value=0.11 Score=47.15 Aligned_cols=65 Identities=17% Similarity=0.089 Sum_probs=39.2
Q ss_pred CCCcEEEEcCCCCCCh--------HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCC-CCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGD--------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK-VPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~--------~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~-~~~~gvV~N~v~~ 346 (370)
..+.+.|+|+|+.... ..........+|.+++|+..... .........+.+.+ .+++ +|+||++-
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 121 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNII-LVLNKFDL 121 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEE-EEEECHHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEE-EEEEChhc
Confidence 4567999999963221 11111111247999999877653 33444444555566 7755 89999984
No 197
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.01 E-value=0.4 Score=45.27 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=41.9
Q ss_pred CCcEEEEcCCCCCCh-------------HHHHHhhHhCCCeEEEEecCCc--chHHHHHHHHHHHHcCCCCeEEEEEcCC
Q 017486 280 ELDYLVIDMPPGTGD-------------IQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENMC 344 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~-------------~~l~~~~~~~~d~viiV~~p~~--~s~~~~~~~~~~l~~~~~~~~gvV~N~v 344 (370)
..++.|+|||+-... ..+....+..+|.+++|+++.. ....+..++++.+...+.+++ +|+|++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i-~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTF-GVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEE-EEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEE-EEEeCC
Confidence 568999999963221 2233333446788888776532 223445566666666677766 788999
Q ss_pred ccC
Q 017486 345 HFD 347 (370)
Q Consensus 345 ~~~ 347 (370)
+..
T Consensus 214 Dl~ 216 (360)
T 3t34_A 214 DLM 216 (360)
T ss_dssp GGC
T ss_pred ccC
Confidence 864
No 198
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.98 E-value=0.053 Score=47.19 Aligned_cols=68 Identities=4% Similarity=-0.086 Sum_probs=42.3
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHH-HHHHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFID-VAKGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~-~~~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|.......+....+..+|.+++|..... .++.. +...++.+.+. +.++ -+|.|+++..
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl~ 144 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDLR 144 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEE-EEEEECGGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhc
Confidence 45778999998632211122222345799999887654 45555 46666666654 4554 4889999864
No 199
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=94.96 E-value=0.048 Score=59.45 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||. ..+.. .....+..+|.+|+|+........++.+.+..+...+++.+-+|+|+++..
T Consensus 357 ~~~kI~IIDTPG-HedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 357 PTRHYAHVDCPG-HADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp SSCEEEEEECCC-HHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence 567899999984 44332 222223457999999987765445566666777777888666899999864
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.95 E-value=0.022 Score=49.78 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=32.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
..+|+|+ |.+|+||||+..+|+..+... +++..|+.|+.
T Consensus 38 ~~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 3577777 779999999999999887655 78999999975
No 201
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.95 E-value=0.086 Score=47.66 Aligned_cols=65 Identities=8% Similarity=-0.068 Sum_probs=41.7
Q ss_pred CCCcEEEEcCCCCCChH------H--HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDI------Q--LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~------~--l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
..+.+.|+|+|+..... . ........+|.+++|+..... .........+.+.+.|++ +|+||++.
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvi-lv~NK~Dl 122 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVI-LAMTAIDE 122 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEE-EEEECHHH
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEE-EEEECcCC
Confidence 35689999999632211 1 111111357999999887654 333445666677788865 89999985
No 202
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.95 E-value=0.19 Score=49.75 Aligned_cols=68 Identities=7% Similarity=-0.045 Sum_probs=43.3
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
+.+.+.|+|||..-....+....+..+|.+|+|..... .++..+...+..+.+ .+.++ -+|.||++-.
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 436 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDLP 436 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEE-EEEEECCSSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcE-EEEEECCCCC
Confidence 45789999999632222222223445799999987654 456776666555543 25554 4899999864
No 203
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.91 E-value=0.02 Score=48.63 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=31.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
|+++++|++ ..|+||||++..|+..+...|+++..|-.|..
T Consensus 1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 1 MSLILSIVG-TSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp --CEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 456899994 88999999999999999988888777766643
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.88 E-value=0.018 Score=48.79 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=29.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDA 210 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~ 210 (370)
+.+.++ |..|+||||++..++..+. ..|.+++.+++
T Consensus 39 ~~~~l~-G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 39 KGLTFV-GSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CEEEEC-CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 466666 9999999999999999997 77877776543
No 205
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.87 E-value=0.034 Score=47.13 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=28.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+|+++ |-.|+||||++..|+..+...|..++-.|
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFE-GIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56666 88999999999999999988888877554
No 206
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=94.83 E-value=0.028 Score=56.12 Aligned_cols=68 Identities=12% Similarity=0.068 Sum_probs=43.9
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||.-.....+....+..+|.+++|+..+.....+....+..+...++|+ -+++|+++..
T Consensus 49 ~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPi-IVviNKiDl~ 116 (501)
T 1zo1_I 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPV-VVAVNKIDKP 116 (501)
T ss_dssp TSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCE-EEEEECSSSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceE-EEEEEecccc
Confidence 3456889999963221112122233579999998876544445556667777788985 4999999864
No 207
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.81 E-value=0.22 Score=43.70 Aligned_cols=87 Identities=16% Similarity=0.051 Sum_probs=51.3
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecC-CcchHHHHHHHHHHHHcC---CCCeEEEEEcCCccCCCCcccc
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL---KVPCIAVVENMCHFDADGKRYY 354 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~~~~~~~~ 354 (370)
..+.+-|+||+..-....+.-.....++.+++|... +..++..+...++.+.+. +++ +-+|.|+++.... .
T Consensus 60 ~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~~~----r 134 (216)
T 4dkx_A 60 RTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI-IMLVGNKTDLADK----R 134 (216)
T ss_dssp CEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSE-EEEEEECTTCGGG----C
T ss_pred eEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCe-EEEEeeccchHhc----C
Confidence 456788999985332222222224456888887654 445677777777766543 344 4588999986321 1
Q ss_pred ccCCChHHHHHhHcCC
Q 017486 355 PFGRGSGSQVCTLSNY 370 (370)
Q Consensus 355 ~~g~~~~~~~a~~~~~ 370 (370)
......+.++|+++|+
T Consensus 135 ~V~~~e~~~~a~~~~~ 150 (216)
T 4dkx_A 135 QVSIEEGERKAKELNV 150 (216)
T ss_dssp CSCHHHHHHHHHHHTC
T ss_pred cccHHHHhhHHHHhCC
Confidence 1223446677777653
No 208
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=94.81 E-value=0.029 Score=56.48 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|||.--....+....+..+|.+++|+..+..........+..+...++|++ +++|+++..
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiI-VViNKiDl~ 117 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIV-LAINKCDKA 117 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEE-ECCBSGGGT
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEE-EEEeccccc
Confidence 3457889998522211121112334799999998887767777888888888899854 899999864
No 209
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.80 E-value=0.052 Score=45.80 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=41.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCccCC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDA 348 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~~ 348 (370)
..+.+.|+|+|...............+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++...
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 137 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDLPD 137 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTT
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcC
Confidence 34678999998632111111111335699999887654 3566666655554332 445 458999998643
No 210
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.76 E-value=0.044 Score=47.03 Aligned_cols=67 Identities=10% Similarity=0.022 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+.-....+....+..+|.+++|..... .++..+...+..+.. .+.+ +-+|.|+++..
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 143 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIV-VILCGNKKDLD 143 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCE-EEEEEECGGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCCcc
Confidence 3678999998521100011112345799999887654 455556666555543 2444 45899999863
No 211
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.74 E-value=0.038 Score=50.77 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=33.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~ 212 (370)
+.+++++ |..|+||||++.++|..++.. |.+|++++.+.
T Consensus 35 G~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 35 GEVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TCEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CeEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 3467776 999999999999999999876 88999998875
No 212
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=94.74 E-value=0.068 Score=53.05 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=46.8
Q ss_pred CCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||. ..+. ......+..+|.+++|+........+..+.+..++..+++. -+|+|+++..
T Consensus 71 ~~~~i~iiDtPG-h~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~ 138 (482)
T 1wb1_A 71 ENYRITLVDAPG-HADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNA 138 (482)
T ss_dssp TTEEEEECCCSS-HHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSS
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcc
Confidence 346899999985 4332 22223344579999999887644455666667777889998 5999999864
No 213
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.69 E-value=0.019 Score=48.63 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=29.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+.|.|+ |-.|+||||++..||..+...|.+.-.+|.|
T Consensus 4 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 356666 9999999999999999998888655666643
No 214
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.64 E-value=0.19 Score=42.02 Aligned_cols=68 Identities=6% Similarity=-0.015 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~~ 348 (370)
.+.+.|+|+|+..............+|.+++|..... .++..+.+.+..+.+. +.+ +-+|.|+++...
T Consensus 61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 133 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT-LLIFANKQDLPG 133 (186)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCc-EEEEEeCccCCC
Confidence 4678999998532111111122335799999887654 4577776666555432 455 459999998643
No 215
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.63 E-value=0.075 Score=45.71 Aligned_cols=68 Identities=13% Similarity=0.025 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|..-....+....+..+|.+++|..... .++..+. ..+..+.+. +.+++ +|.|+++..
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 147 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII-LVGTKLDLR 147 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEE-EEEECHHHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEechhhc
Confidence 44667799998532211122222345799998887654 4555654 556666654 56654 899999864
No 216
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.63 E-value=0.019 Score=49.60 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=28.4
Q ss_pred ccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 169 LQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 169 ~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+..++++|+++ |-.|+||||++..|+..+ | ..++|.|.
T Consensus 14 m~~~~~~I~l~-G~~GsGKSTla~~L~~~l---g--~~~i~~d~ 51 (202)
T 3t61_A 14 VRRFPGSIVVM-GVSGSGKSSVGEAIAEAC---G--YPFIEGDA 51 (202)
T ss_dssp -CCCSSCEEEE-CSTTSCHHHHHHHHHHHH---T--CCEEEGGG
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CEEEeCCc
Confidence 34456677777 999999999999999887 4 34666664
No 217
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=94.62 E-value=0.1 Score=50.41 Aligned_cols=67 Identities=12% Similarity=0.116 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcch-HHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 281 LDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 281 yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+.+.|+|||. ..+.. .....+..+|.+++|+...... ..+..+.+..+...+.+.+-+|+|+++...
T Consensus 83 ~~i~iiDtPG-h~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 83 RRVSFIDAPG-HEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEEEEEECSS-HHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred cEEEEEECCC-hHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC
Confidence 5799999985 43322 1222233569999999877532 445555555666667665668899998643
No 218
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.60 E-value=0.029 Score=56.65 Aligned_cols=40 Identities=35% Similarity=0.341 Sum_probs=35.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.+|.++ |..|+||||++..|+..|...|+++.++|.|.
T Consensus 371 ~~~~I~l~-G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 371 QGFCVWLT-GLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred cceEEEcc-CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 34567776 89999999999999999999999999999885
No 219
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.59 E-value=0.044 Score=46.65 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=29.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
.|+++ |-.|+||||++..|+..|...|.+|+..+.
T Consensus 2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 46666 889999999999999999989999976654
No 220
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.57 E-value=0.047 Score=61.78 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=36.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
++++.|+ +.+|+||||++.++|...++.|.+|++||++...
T Consensus 383 G~lilI~-G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 4566666 9999999999999999999999999999998754
No 221
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.53 E-value=0.082 Score=45.71 Aligned_cols=68 Identities=9% Similarity=-0.006 Sum_probs=40.5
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|.......+....+..+|.+++|..... .++..+ ...++.+.+. +.+ +-+|.|+++..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~ 145 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 145 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhhc
Confidence 34678999998632111111122345788888887654 455555 4555555543 444 45899999974
No 222
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.52 E-value=0.045 Score=47.88 Aligned_cols=38 Identities=5% Similarity=-0.027 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.+.++ |..|+||||++..++..+...|.++..++++.
T Consensus 53 ~~~ll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 53 QAIYLW-GPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 456666 88999999999999999999999999999854
No 223
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.48 E-value=0.046 Score=53.72 Aligned_cols=39 Identities=28% Similarity=0.522 Sum_probs=33.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~ 213 (370)
.++.++ +.+|+||||++.++|..++. .|.+|++++++..
T Consensus 204 ~liiI~-G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s 243 (454)
T 2r6a_A 204 DLIIVA-ARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS 243 (454)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 456665 99999999999999999986 6899999998864
No 224
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.48 E-value=0.04 Score=48.68 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=31.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADVY 213 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~~ 213 (370)
+.+..+.+|+|||+++.++|...+ +.|++|++++++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 444459999999999999988754 56889999998864
No 225
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.45 E-value=0.62 Score=38.16 Aligned_cols=64 Identities=9% Similarity=-0.004 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCCChH------HH--HHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTGDI------QL--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~------~l--~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
.+.+.|+|||+..... .+ .......+|.+++|...... ......+..+.+.+.+++ +|.|+++.
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~~~p~i-lv~nK~Dl 120 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLL-LALNKMDL 120 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHTTCCEE-EEEECHHH
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhcCCCEE-EEEEchHh
Confidence 3568899998633210 11 11111257888988887653 334445556666677765 89999885
No 226
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.39 E-value=0.041 Score=45.48 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.+.+.++ |..|+||||++..++..+...|++++.++..
T Consensus 36 g~~~~l~-G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVW-GEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CSEEEEE-SSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 3467776 9999999999999999998888889888765
No 227
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.32 E-value=0.37 Score=43.86 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=39.8
Q ss_pred CCcEEEEcCCCCCChH------HHHHhhHh--CCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTGDI------QLTLCQVV--PLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~------~l~~~~~~--~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
.+++.|+|+|+..... .+....+. .+|.+++|..... ..........+.+.+.+++ +|+||++.
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~i-lv~NK~Dl 119 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGIPVT-IALNMIDV 119 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEE-EEEECHHH
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEE-EEEEChhh
Confidence 4678999998632211 12111122 4788888887654 3444455566666788865 89999885
No 228
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.30 E-value=0.054 Score=46.77 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+++|.++ |-.|+||||++..|+..+...|.+|..++
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 9 GALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 3567777 88999999999999999998899886554
No 229
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.24 E-value=0.059 Score=61.01 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+.++.++ +.+|+||||++.++|..+++.|.+|+++++....
T Consensus 732 G~lVlI~-G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 732 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 772 (1706)
T ss_dssp TSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CceEEEE-CCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 3466666 9999999999999999999999999999998743
No 230
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.23 E-value=0.83 Score=37.95 Aligned_cols=65 Identities=9% Similarity=0.002 Sum_probs=40.9
Q ss_pred CCCcEEEEcCCCCCChH------HH--HHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCcc
Q 017486 279 GELDYLVIDMPPGTGDI------QL--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHF 346 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~------~l--~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~ 346 (370)
..+.+.|+|||...... .+ .......+|.+++|.... +.......+..+.+.+.+++ +|.|+++.
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~pii-lv~nK~Dl 124 (188)
T 2wjg_A 52 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT--ALERNLYLTLQLMEMGANLL-LALNKMDL 124 (188)
T ss_dssp TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGG--GHHHHHHHHHHHHTTTCCEE-EEEECHHH
T ss_pred CCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecch--hHHHHHHHHHHHHhcCCCEE-EEEEhhhc
Confidence 34678899998633210 11 111112368888887765 35566667777777777765 88999885
No 231
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.14 E-value=0.046 Score=46.85 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=29.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+++.++ |-.|+||||++..++..+..+|++|+++-
T Consensus 4 ~i~vi~-G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVIT-GPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEE-ESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 355555 88899999999999999999999999874
No 232
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.14 E-value=0.035 Score=55.33 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=33.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~~ 213 (370)
.++ +..+.+|+||||++.++|..++.. |.+|++++++..
T Consensus 243 ~l~-li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s 282 (503)
T 1q57_A 243 EVI-MVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES 282 (503)
T ss_dssp CEE-EEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred eEE-EEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence 355 445999999999999999999987 999999999874
No 233
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.12 E-value=0.051 Score=53.27 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=33.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~ 213 (370)
.++.++ +.+|+||||++.++|...+. .|.+|+++++...
T Consensus 201 ~l~ii~-G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 201 SLNIIA-ARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred cEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 455555 99999999999999999997 5899999999753
No 234
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.10 E-value=0.025 Score=47.84 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=25.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+++.|.++ |-.|+||||++..||..+ |.. ++|.|.
T Consensus 4 ~~~~i~l~-G~~GsGKst~a~~La~~l---~~~--~i~~d~ 38 (185)
T 3trf_A 4 NLTNIYLI-GLMGAGKTSVGSQLAKLT---KRI--LYDSDK 38 (185)
T ss_dssp -CCEEEEE-CSTTSSHHHHHHHHHHHH---CCC--EEEHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 34567766 889999999999999877 443 456553
No 235
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.10 E-value=0.068 Score=61.36 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+.++.++ +.+|+||||++.++|..+++.|.+|++||+....
T Consensus 383 G~lilI~-G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCH
Confidence 3466666 9999999999999999999999999999998743
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.10 E-value=0.029 Score=47.10 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
++|.+ +|-.|+||||++..||..+ +...+.+|.|
T Consensus 4 ~~i~l-~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIIL-NGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CEEEE-ECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 45554 5999999999999988766 4456666666
No 237
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.48 Score=41.25 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=38.9
Q ss_pred CCcEEEEcCCCCCCh-H-HHHHhhHhCCCeEEEEecC-CcchHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGD-I-QLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~-~-~l~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
.+.++++|++. ... . .+.......+|.+++|..- +..++..+......+.+. +++++ +|.||++..
T Consensus 86 ~~~l~~~Dt~g-~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pii-lVgNK~DL~ 158 (211)
T 2g3y_A 86 SATIILLDMWE-NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII-LVGNKSDLV 158 (211)
T ss_dssp EEEEEEECCTT-TTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEE-EEEECTTCG
T ss_pred eeEEEEeecCC-CcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEE-EEEEChHHh
Confidence 35678889874 332 1 1111111235777777654 455677777666666543 56654 899999863
No 238
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.05 E-value=0.065 Score=46.19 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+++|+++ |-.|+||||++..|+..+...+.++.++.
T Consensus 10 ~~~I~l~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFE-GLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp SCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4577777 88999999999999999988888885544
No 239
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.99 E-value=0.047 Score=45.66 Aligned_cols=35 Identities=23% Similarity=0.135 Sum_probs=25.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+++|.+. |-.|+||||++..|+.. ......||.|.
T Consensus 2 ~~~I~i~-G~~GsGKST~a~~L~~~----~~~~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILTI-GCPGSGKSTWAREFIAK----NPGFYNINRDD 36 (181)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH----STTEEEECHHH
T ss_pred CeEEEEe-cCCCCCHHHHHHHHHhh----cCCcEEecHHH
Confidence 3455555 99999999999998872 23466777764
No 240
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=93.92 E-value=0.011 Score=60.40 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=35.5
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcch-------HHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||. ..+.. .....+..+|.+|+|+...... .......+..+...+++.+-+|+|+++..
T Consensus 253 ~~~~i~iiDTPG-h~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 253 DKKIYEIGDAPG-HRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp ------CCEEES-SSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred CCeEEEEEECCC-hHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 567899999985 33211 1111133468888888765421 34456666777788887566899999864
No 241
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.83 E-value=0.085 Score=45.77 Aligned_cols=39 Identities=33% Similarity=0.389 Sum_probs=32.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.+|+|. |..|+||||++..|+..+...|.++..|..|-
T Consensus 22 g~~v~I~-G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 22 RQLVALS-GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CEEEEEE-CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 3578888 99999999999999999986677777777764
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.71 E-value=0.045 Score=51.23 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=33.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC------CCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~------G~rVllID~D~~ 213 (370)
+.++.++ +..|+||||++.++|...+.. |.+|++||++..
T Consensus 107 G~i~~i~-G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTEFF-GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEE-CCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3466666 889999999999999987655 789999999863
No 243
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.62 E-value=0.49 Score=40.51 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=37.6
Q ss_pred CCcEEEEcCCCCCChHH--HHHhhHhCCCeEEEEecCCcc--hHHHHHHH-HHHHHc-----CCCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPGTGDIQ--LTLCQVVPLTAAVIVTTPQKL--AFIDVAKG-VRMFSK-----LKVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~--l~~~~~~~~d~viiV~~p~~~--s~~~~~~~-~~~l~~-----~~~~~~gvV~N~v~~~~ 348 (370)
.+.+.|+|+|. ..... +.......+|.+++|...... +.....+. .+.+.. .+.+ +-+|.|+++...
T Consensus 53 ~~~~~i~Dt~G-~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 129 (214)
T 2fh5_B 53 GNSLTLIDLPG-HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPS-LLIACNKQDIAM 129 (214)
T ss_dssp CCEEEEEECCC-CHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCE-EEEEEECTTSTT
T ss_pred ccEEEEEECCC-ChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCC-EEEEEECCCCCC
Confidence 57899999985 43222 111113346888999887652 22333322 222221 2445 459999999643
No 244
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.61 E-value=0.063 Score=54.97 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=36.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYGP 215 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~~ 215 (370)
.+++|.|+ |-.|+||||++..|+..|.+.|.+++.+|.|.-..
T Consensus 51 ~g~lIvLt-GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~ 93 (630)
T 1x6v_B 51 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 93 (630)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTT
T ss_pred CCCEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhh
Confidence 34566666 99999999999999999998999999999876443
No 245
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.59 E-value=0.93 Score=37.95 Aligned_cols=61 Identities=18% Similarity=0.202 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC----CCCeEEEEEcCCcc
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL----KVPCIAVVENMCHF 346 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~ 346 (370)
.+.+.|+|+|.. .... . ...+|.+++|..... .++..+...+..+.+. +.+++ +|.|+++.
T Consensus 66 ~~~l~i~Dt~G~-~~~~--~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl 131 (184)
T 3ihw_A 66 SYLLLIRDEGGP-PELQ--F--AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV-LVGTQDAI 131 (184)
T ss_dssp EEEEEEEECSSS-CCHH--H--HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEE-EEEECTTC
T ss_pred EEEEEEEECCCC-hhhh--e--ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEECccc
Confidence 456788999853 3322 1 234588888876544 4567777777777654 45554 89999886
No 246
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.56 E-value=0.15 Score=50.08 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=44.4
Q ss_pred CCcEEEEcCCCC---------CChHH-H-HHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPG---------TGDIQ-L-TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~---------~~~~~-l-~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
...+.|+|||.- ..... + .......+|.+++|.+..........+.++.+.+.+.+++ +|.|+++...
T Consensus 242 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~i-lv~NK~Dl~~ 320 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV-IVVNKWDAVD 320 (456)
T ss_dssp TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSC
T ss_pred CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEEChhcCC
Confidence 447889999852 22211 1 1112345799999988776545566677777777777755 8999998643
No 247
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.52 E-value=0.054 Score=47.17 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=29.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHH-----hCC-CcEEEeeCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLA-----GMG-ARVGIFDAD 211 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA-----~~G-~rVllID~D 211 (370)
|+.++.++ |..|+|||+.|..++..++ +.| ++|.+..+|
T Consensus 4 ~~mi~l~t-G~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 4 MAEICLIT-GTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred ceeEEEEE-eCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 45566666 9999999999998877765 567 666666655
No 248
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.51 E-value=0.068 Score=53.57 Aligned_cols=40 Identities=15% Similarity=0.251 Sum_probs=33.7
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
++.+|.+ .|-.|+||||++..||..|...+.++.+++.|-
T Consensus 34 ~~~lIvl-vGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVM-VGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEE-ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 3345555 499999999999999999998899999998885
No 249
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.47 E-value=0.047 Score=45.47 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=26.4
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
|+++|.++ |-.|+||||++..||..| |. -++|+|
T Consensus 1 m~~~I~l~-G~~GsGKsT~a~~La~~l---g~--~~id~d 34 (173)
T 1e6c_A 1 MTEPIFMV-GARGCGMTTVGRELARAL---GY--EFVDTD 34 (173)
T ss_dssp CCCCEEEE-SCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHh---CC--cEEccc
Confidence 35677777 889999999999998877 44 356766
No 250
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.45 E-value=0.073 Score=49.45 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=32.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH--hCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA--GMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA--~~G~rVllID~D~~ 213 (370)
+.+|+++ |..|+||||++..|+..+. -.+.+|.+|++|-.
T Consensus 80 g~iigI~-G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 80 PYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 4688888 8899999999999998886 34557999988854
No 251
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=93.43 E-value=0.11 Score=50.89 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=40.2
Q ss_pred CCeEEEEEeCC---CCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCCCCcCCCCc
Q 017486 172 ISNIVAVSSCK---GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPSLPTMVSPE 224 (370)
Q Consensus 172 ~~kvI~v~S~k---GGvGKTTla~nLA~~LA~~G~rVllID~D~~~~sl~~~l~~~ 224 (370)
.+|.|.||+-. -|+||||++..|+.+|.+.|+++.+. ++.||+.-.||..
T Consensus 42 ~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~---lRePSlGP~FGiK 94 (543)
T 3do6_A 42 DGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT---LREPSLGPTLGLK 94 (543)
T ss_dssp CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCHHHHHHSC
T ss_pred CCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE---EecCCCCCcCCcc
Confidence 46788877654 49999999999999999999999764 6777876666554
No 252
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.42 E-value=0.91 Score=43.01 Aligned_cols=35 Identities=23% Similarity=0.224 Sum_probs=28.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEee
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFD 209 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID 209 (370)
.+|+|+ |..|+||||+...++..+... |.+++.++
T Consensus 124 g~i~I~-GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 124 GLVLVT-GPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp EEEEEE-CSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 467777 999999999999999988764 66666555
No 253
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=93.42 E-value=0.2 Score=50.21 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=41.9
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCC--CCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLK--VPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~--~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+.-....+....+..+|.+++|.+... .......++.+.+.+ .+++ +|.||++..
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~--~~~~~~~~~~l~~~~~~~pvi-lV~NK~Dl~ 163 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT--DSNKHYWLRHIEKYGGKSPVI-VVMNKIDEN 163 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG--GGGHHHHHHHHHHHSSSCCEE-EEECCTTTC
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC--chhHHHHHHHHHHhCCCCCEE-EEEECCCcc
Confidence 46889999999632211111111335688888887644 355666666676644 6655 999999864
No 254
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.35 E-value=0.075 Score=50.22 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh------CCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~------~G~rVllID~D~~ 213 (370)
+.++.|+ |..|+||||++.++|...+. .|.+|++||++..
T Consensus 122 G~i~~I~-G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 122 MAITEAF-GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SEEEEEE-CCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3455555 99999999999999987654 5789999999863
No 255
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.32 E-value=0.088 Score=48.95 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=32.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D 211 (370)
.+-+.++ |..|+|||+++..+|..+. +.|++|+.+.+.
T Consensus 152 ~~~lll~-G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLY-GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 3456666 8999999999999999999 999999988764
No 256
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.31 E-value=0.064 Score=54.44 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=34.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCC-CcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G-~rVllID~D~ 212 (370)
.+.+|.|+ |-.|+||||+|..|+..|..+| +++.++|.|.
T Consensus 395 ~~~~I~l~-GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEee-cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 34567776 9999999999999999999878 8999999885
No 257
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.30 E-value=0.1 Score=43.41 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=27.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHh-------CCCcEEEeeC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDA 210 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~-------~G~rVllID~ 210 (370)
+.+.++ |..|+|||+++..++..+.. .+.++..+++
T Consensus 44 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 44 NNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CEEEEE-CCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 355555 99999999999999999876 3455555544
No 258
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.24 E-value=0.095 Score=45.00 Aligned_cols=34 Identities=24% Similarity=0.150 Sum_probs=27.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+.|+|. |-.|+||||++..||..+...| +|+..+
T Consensus 5 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g-~~~~~~ 38 (213)
T 2plr_A 5 VLIAFE-GIDGSGKSSQATLLKDWIELKR-DVYLTE 38 (213)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence 456666 9999999999999999997777 675544
No 259
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.24 E-value=0.096 Score=47.67 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC----------CCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM----------GARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~----------G~rVllID~D~ 212 (370)
+.+++++ +.+|+||||++.+++..++.. +.+|++++...
T Consensus 30 G~i~~i~-G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALV-SPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 3477777 999999999999999977642 35677776653
No 260
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.17 E-value=0.082 Score=44.76 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+.|.++ |-.|+||||++..|+..+
T Consensus 6 ~~I~l~-G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVT-GHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHc
Confidence 455555 999999999999999877
No 261
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.17 E-value=0.098 Score=49.08 Aligned_cols=40 Identities=25% Similarity=0.294 Sum_probs=33.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh--CCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG--MGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~--~G~rVllID~D~~ 213 (370)
+.+|+++ |-.|+||||++..|+..+.. .+.+|.++..|-.
T Consensus 92 p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 92 PYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4577877 99999999999999998874 3568999999864
No 262
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=93.15 E-value=0.17 Score=47.78 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=42.1
Q ss_pred CcEEEEcCCCCC-------ChHHHHHhhHhCCCeEEEEecCC----cchHHHHHHHHHHHHcC-----CCCeEEEEEcCC
Q 017486 281 LDYLVIDMPPGT-------GDIQLTLCQVVPLTAAVIVTTPQ----KLAFIDVAKGVRMFSKL-----KVPCIAVVENMC 344 (370)
Q Consensus 281 yD~VIIDtpp~~-------~~~~l~~~~~~~~d~viiV~~p~----~~s~~~~~~~~~~l~~~-----~~~~~gvV~N~v 344 (370)
..++|+|+|.-. +-....+..+..+|.+++|++.. ..++.++..+.+.+... +.+++ +|+|++
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i-lV~NK~ 284 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI-IVANKM 284 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC-BEEECT
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE-EEEECc
Confidence 578999998511 00011112233468999998875 45777777777777764 45544 899999
Q ss_pred ccC
Q 017486 345 HFD 347 (370)
Q Consensus 345 ~~~ 347 (370)
+..
T Consensus 285 Dl~ 287 (342)
T 1lnz_A 285 DMP 287 (342)
T ss_dssp TST
T ss_pred cCC
Confidence 864
No 263
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.09 E-value=1.1 Score=42.22 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=38.5
Q ss_pred CCcEEEEcCCCCCCh-------H--HHHHhhHhCCCeEEEEecCCcc---hHHHHHHHHHHHHc-C-CCCeEEEEEcCCc
Q 017486 280 ELDYLVIDMPPGTGD-------I--QLTLCQVVPLTAAVIVTTPQKL---AFIDVAKGVRMFSK-L-KVPCIAVVENMCH 345 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~-------~--~l~~~~~~~~d~viiV~~p~~~---s~~~~~~~~~~l~~-~-~~~~~gvV~N~v~ 345 (370)
.+++.++|||+.... . .........+|.+++|.+.+.. +.....+.+..+.. . +.+++ +|.|+.+
T Consensus 213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pii-lV~NK~D 291 (357)
T 2e87_A 213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL-VVINKID 291 (357)
T ss_dssp TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEE-EEECCTT
T ss_pred CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEE-EEEECcc
Confidence 456888898864221 0 1111112236888888875543 45555566655544 2 55654 8899988
Q ss_pred cC
Q 017486 346 FD 347 (370)
Q Consensus 346 ~~ 347 (370)
..
T Consensus 292 l~ 293 (357)
T 2e87_A 292 VA 293 (357)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 264
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.08 E-value=0.078 Score=46.64 Aligned_cols=38 Identities=18% Similarity=0.110 Sum_probs=31.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHh------CCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~------~G~rVllID~D~ 212 (370)
.+++++ +..|+||||++..+|...+. .+.+|+.+|.+.
T Consensus 25 ~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 477777 89999999999999986443 367899999875
No 265
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.96 E-value=0.069 Score=45.75 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=27.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
++.|+++ |-.|+||||++..||..+ .|.+++.++.
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l--~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI--PANTIKYLNF 38 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence 3577777 889999999999998877 4677877664
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.87 E-value=0.084 Score=47.56 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=25.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
++|+++ |..|+||||+|..||..+ |. .+|+.|-
T Consensus 2 ~li~I~-G~~GSGKSTla~~La~~~---~~--~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIY-GPTCSGKTDMAIQIAQET---GW--PVVALDR 34 (253)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred eEEEEE-CCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence 456555 999999999999998876 33 4567765
No 267
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.86 E-value=0.091 Score=49.67 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
++|+|+ |-.|+||||+|..||..+ .+.+|++|-.
T Consensus 8 ~lI~I~-GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIV-GPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred ceEEEE-CCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 466666 889999999999998876 2788999964
No 268
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.85 E-value=0.083 Score=44.58 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=26.0
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
|+++|+++ |-.|+||||++..|+..+ | ...+|+|
T Consensus 5 ~~~~I~l~-G~~GsGKsT~~~~L~~~l---~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVL-GGPGSGKGTQCANIVRDF---G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred cCcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence 45677777 889999999999998876 4 3456664
No 269
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.73 E-value=0.095 Score=52.32 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=33.6
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh-C-CCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAG-M-GARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~-~-G~rVllID~D~ 212 (370)
.+.+|.++ |-.|+||||++..||..|.. . |+.+-++|.|.
T Consensus 394 ~~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 34566666 88999999999999999986 5 57888999997
No 270
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.73 E-value=0.11 Score=43.29 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=26.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+++|+++ |..|+||||++..|+..+ | ..++|.|.
T Consensus 8 g~~i~l~-G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLM-GVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 4577777 999999999999998876 4 35677764
No 271
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.68 E-value=0.063 Score=45.33 Aligned_cols=34 Identities=35% Similarity=0.474 Sum_probs=26.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+++|+++ |-.|+||||++..||..+ |.. ++|.|.
T Consensus 2 ~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~D~ 35 (184)
T 2iyv_A 2 APKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTDV 35 (184)
T ss_dssp CCSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence 3467776 999999999999998876 444 567764
No 272
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.63 E-value=0.082 Score=49.61 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=27.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
|.++|.++ |-.|+||||++..||..+ ...+||+|-.
T Consensus 4 m~~~i~i~-GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLM-GPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 44566665 899999999999998765 3678888853
No 273
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.62 E-value=0.12 Score=45.03 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=29.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
|++-|+|= |--|+||||.+..|+..|. .|++|++.-
T Consensus 1 M~kFI~~E-G~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 1 MSAFITFE-GPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp -CEEEEEE-CCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 45667776 8889999999999999996 588888763
No 274
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.57 E-value=1.3 Score=42.18 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=30.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDA 210 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~ 210 (370)
+.+++|+ |..|+||||+...|+..+... ..+|+.++-
T Consensus 136 g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~ 173 (372)
T 2ewv_A 136 MGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED 173 (372)
T ss_dssp SEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence 4577777 889999999999999988764 457777774
No 275
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.57 E-value=0.038 Score=47.80 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=29.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
+|+|. |-.|+||||++..|+..+...|.+|.++.-
T Consensus 2 ~I~i~-G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEE-EEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 56665 888999999999999999888888887753
No 276
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.52 E-value=0.12 Score=44.72 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=30.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
+.+|+++ |..|+||||++..|+..+.. ++.+++.|...
T Consensus 6 ~~~i~i~-G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~ 43 (211)
T 3asz_A 6 PFVIGIA-GGTASGKTTLAQALARTLGE---RVALLPMDHYY 43 (211)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCB
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHhCC---CeEEEecCccc
Confidence 4588888 77899999999999887742 68899988653
No 277
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.50 E-value=0.071 Score=44.71 Aligned_cols=34 Identities=32% Similarity=0.338 Sum_probs=25.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
|+.|.++ |-.|+||||++..||..+ | ..++|.|.
T Consensus 4 m~~i~i~-G~~GsGKsTla~~La~~l---~--~~~~d~d~ 37 (175)
T 1via_A 4 AKNIVFI-GFMGSGKSTLARALAKDL---D--LVFLDSDF 37 (175)
T ss_dssp -CCEEEE-CCTTSCHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---C--CCEEcccH
Confidence 4466666 999999999999999876 3 34667664
No 278
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.46 E-value=0.082 Score=48.83 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=30.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCC--CcEEEe-eCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG--ARVGIF-DADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G--~rVllI-D~D~~ 213 (370)
+.+|+|+ |..|+||||++..|+..+...| .++..+ ..|..
T Consensus 31 ~~ii~I~-G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 31 PLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 3578887 9999999999999999998654 444444 77753
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.42 E-value=0.092 Score=43.45 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=25.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
++|.++ |-.|+||||++..||..+ |.. ++|.|.
T Consensus 2 ~~i~l~-G~~GsGKsT~~~~L~~~l---~~~--~i~~d~ 34 (173)
T 3kb2_A 2 TLIILE-GPDCCFKSTVAAKLSKEL---KYP--IIKGSS 34 (173)
T ss_dssp CEEEEE-CSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence 356665 999999999999998776 443 567774
No 280
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.42 E-value=0.073 Score=45.74 Aligned_cols=32 Identities=41% Similarity=0.477 Sum_probs=24.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
++|+++ |..|+||||++..||. + |. -++|+|-
T Consensus 2 ~~i~i~-G~~GsGKSTl~~~L~~-~---g~--~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLT-GNIGCGKSTVAQMFRE-L---GA--YVLDADK 33 (204)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHH-T---TC--EEEEHHH
T ss_pred eEEEEE-CCCCcCHHHHHHHHHH-C---CC--EEEEccH
Confidence 478887 8899999999988887 4 54 4556553
No 281
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.39 E-value=0.12 Score=43.05 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHh
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAG 200 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~ 200 (370)
+.+.++ |..|+|||+++..++..+..
T Consensus 44 ~~vll~-G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 44 NNPILL-GDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CEEEEE-SCGGGCHHHHHHHHHHHHHT
T ss_pred CceEEE-CCCCCCHHHHHHHHHHHHHh
Confidence 345554 99999999999999999876
No 282
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.30 E-value=0.14 Score=43.99 Aligned_cols=34 Identities=32% Similarity=0.286 Sum_probs=25.4
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.++.|.++ |-.|+||||++..||..+ |..+ +|+|
T Consensus 19 ~~~~I~l~-G~~GsGKST~a~~La~~l---~~~~--i~~d 52 (201)
T 2cdn_A 19 SHMRVLLL-GPPGAGKGTQAVKLAEKL---GIPQ--ISTG 52 (201)
T ss_dssp SCCEEEEE-CCTTSSHHHHHHHHHHHH---TCCE--EEHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCcE--Eehh
Confidence 34467666 999999999999999877 5554 5543
No 283
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.29 E-value=0.068 Score=46.17 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=28.0
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.+.+|+++ |..|+||||++..|+..+. .+.++|.|..
T Consensus 20 ~~~~i~i~-G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 20 KTFIIGIS-GVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 35688888 8889999999888765431 5888898853
No 284
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.24 E-value=0.063 Score=46.09 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=25.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
++|+++ |-.|+||||++..||..+ | +-++|.|.
T Consensus 3 ~~i~i~-G~~GsGKst~~~~la~~l---g--~~~~d~d~ 35 (208)
T 3ake_A 3 GIVTID-GPSASGKSSVARRVAAAL---G--VPYLSSGL 35 (208)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence 477777 889999999999998876 3 45567663
No 285
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.19 E-value=0.23 Score=43.67 Aligned_cols=36 Identities=14% Similarity=-0.027 Sum_probs=31.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+++..++ |.-|.||||.+..+|..+..+|+||+++-
T Consensus 28 G~l~vit-G~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GWIEVIC-GSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CEEEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4454444 88899999999999999999999999985
No 286
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.18 E-value=0.083 Score=47.47 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=28.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+|.++ |..|+||||++..|+..+ +..+.++|.|...
T Consensus 33 ~~i~l~-G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r 69 (253)
T 2p5t_B 33 IAILLG-GQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFR 69 (253)
T ss_dssp EEEEEE-SCGGGTTHHHHHHHHHHT---TTCCEEECGGGGG
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---CCCcEEEecHHHH
Confidence 455555 999999999999998765 3457788998654
No 287
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.15 E-value=0.16 Score=45.82 Aligned_cols=20 Identities=50% Similarity=0.604 Sum_probs=16.6
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLA 195 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA 195 (370)
.|++. |..|+||||+.-.|.
T Consensus 38 ~I~lv-G~~g~GKSSLin~l~ 57 (262)
T 3def_A 38 TVLVL-GKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEEE-ECTTSSHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHh
Confidence 56666 999999999987775
No 288
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.12 E-value=0.061 Score=52.53 Aligned_cols=68 Identities=9% Similarity=0.056 Sum_probs=40.1
Q ss_pred CCcEEEEcCCCC---------CChHHH--HHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPG---------TGDIQL--TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~---------~~~~~l--~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
...+.|+|||+- ...... .......+|.+++|.........+-.+.+..+...+.+++ +|+|+++...
T Consensus 222 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~ii-iv~NK~Dl~~ 300 (436)
T 2hjg_A 222 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVV-IVVNKWDAVD 300 (436)
T ss_dssp TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEE-EEEECGGGSC
T ss_pred CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEE-EEEECccCCC
Confidence 345888898852 121111 1112334688998887665322233356666666676655 8999998643
No 289
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=92.11 E-value=0.35 Score=47.54 Aligned_cols=68 Identities=16% Similarity=0.097 Sum_probs=47.9
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHH-------HHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFI-------DVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~-------~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||. ..+.. .....+..+|.+++|+........ +..+.+..+...+++.+-+|+|+++..
T Consensus 83 ~~~~~~iiDtPG-h~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPG-HRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCC-CTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCC-cHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 567899999985 54332 223334468999999998765433 556666677778888666899999864
No 290
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.04 E-value=1.5 Score=39.50 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=15.9
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNL 194 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nL 194 (370)
.|+++ |..|+||||+.-.|
T Consensus 10 ~I~vv-G~~g~GKSTLin~L 28 (274)
T 3t5d_A 10 TLMVV-GESGLGKSTLINSL 28 (274)
T ss_dssp EEEEE-ECTTSSHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHH
Confidence 57777 89999999998665
No 291
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.00 E-value=0.14 Score=42.54 Aligned_cols=34 Identities=26% Similarity=0.362 Sum_probs=25.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.+|.++ |-.|+||||++..||..| |.+ ++|+|.
T Consensus 7 ~~~i~l~-G~~GsGKSTva~~La~~l---g~~--~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLI-GFMGSGKSSLAQELGLAL---KLE--VLDTDM 40 (168)
T ss_dssp -CEEEEE-SCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence 4577777 899999999999998876 554 456654
No 292
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.97 E-value=0.081 Score=44.03 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=26.4
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
|+++|+++ |..|+||||++..||..+ | ..++|.|.
T Consensus 3 ~~~~i~l~-G~~GsGKSTl~~~La~~l---~--~~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLV-GPMGAGKSTIGRQLAQQL---N--MEFYDSDQ 37 (173)
T ss_dssp CCCCEEEE-CCTTSCHHHHHHHHHHHT---T--CEEEEHHH
T ss_pred CCCeEEEE-CCCCCCHHHHHHHHHHHh---C--CCEEeccH
Confidence 34578887 899999999999888765 3 35667663
No 293
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.94 E-value=0.11 Score=44.93 Aligned_cols=34 Identities=32% Similarity=0.408 Sum_probs=26.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.+|+++ |..|+||||++..|+..+ | .-+||+|-.
T Consensus 13 ~iIglt-G~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVT-GKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 378888 889999999999888764 5 456788753
No 294
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.93 E-value=0.21 Score=43.81 Aligned_cols=35 Identities=31% Similarity=0.268 Sum_probs=30.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+.|+|. |-.|+||||++..|+..|...|++|.+..
T Consensus 7 ~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLE-GPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 456665 99999999999999999999999997664
No 295
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.87 E-value=0.14 Score=44.06 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=25.9
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
|+.+|+++ |..|+||||++..||. .|.. ++|+|.
T Consensus 1 m~~~i~l~-G~~GsGKST~~~~La~----lg~~--~id~d~ 34 (206)
T 1jjv_A 1 MTYIVGLT-GGIGSGKTTIANLFTD----LGVP--LVDADV 34 (206)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence 34678888 8999999999988875 4654 467764
No 296
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.87 E-value=0.12 Score=42.52 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=22.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+|+++ |..|+||||++..| .+.|..++-+|
T Consensus 3 ~I~l~-G~~GsGKsT~a~~L----~~~g~~~i~~~ 32 (179)
T 3lw7_A 3 VILIT-GMPGSGKSEFAKLL----KERGAKVIVMS 32 (179)
T ss_dssp EEEEE-CCTTSCHHHHHHHH----HHTTCEEEEHH
T ss_pred EEEEE-CCCCCCHHHHHHHH----HHCCCcEEEHh
Confidence 56665 99999999999888 45677765443
No 297
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.85 E-value=0.19 Score=44.25 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=31.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH-hCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA-GMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA-~~G~rVllID~D~ 212 (370)
+.++++. |..|+||||+...++.... ..+.++++++.+.
T Consensus 30 G~~~~l~-GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLT-GGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEE-CCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 4578887 9999999999999996555 6677888888764
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.84 E-value=0.14 Score=44.02 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=26.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+++|+++ |..|+||||++..|+..+ | ...+|.|.
T Consensus 29 g~~i~l~-G~~GsGKSTl~~~L~~~~---g--~~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVM-GVSGSGKTTIAHGVADET---G--LEFAEADA 62 (200)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence 3577777 999999999999999877 4 35677764
No 299
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.81 E-value=0.15 Score=43.77 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=25.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
++.|.++ |-.|+||||++..||..+ |.. .+|.|
T Consensus 25 ~~~i~l~-G~~GsGKsTl~~~La~~l---~~~--~i~~d 57 (199)
T 3vaa_A 25 MVRIFLT-GYMGAGKTTLGKAFARKL---NVP--FIDLD 57 (199)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence 4567776 999999999999999887 444 34554
No 300
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=91.75 E-value=0.35 Score=47.05 Aligned_cols=68 Identities=13% Similarity=0.143 Sum_probs=48.7
Q ss_pred CCCcEEEEcCCCCCChH-HHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDI-QLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||. ..+. ......+..+|.+++|+...........+.+..+...+++.+-+|+|+++..
T Consensus 102 ~~~~~~iiDtpG-h~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AKRKFIIADTPG-HEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SSEEEEEEECCC-SGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCC-hHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 456799999985 5442 2222334568999999988765555666777777778887666899999864
No 301
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.70 E-value=0.46 Score=42.80 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=36.2
Q ss_pred CCCcEEEEcCCCCCCh------HHHHH-hh---HhCCCeEEEEecCCcchHHH-HHHHHHHHHcC-C----CCeEEEEEc
Q 017486 279 GELDYLVIDMPPGTGD------IQLTL-CQ---VVPLTAAVIVTTPQKLAFID-VAKGVRMFSKL-K----VPCIAVVEN 342 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~------~~l~~-~~---~~~~d~viiV~~p~~~s~~~-~~~~~~~l~~~-~----~~~~gvV~N 342 (370)
..+.+.|+|||+ ..+ ..... .. ...+|.+++|...+..++.. -.+.++.+.+. + .+ +-+|+|
T Consensus 85 ~~~~l~iiDTpG-~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~-iivV~n 162 (270)
T 1h65_A 85 AGFTLNIIDTPG-LIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK-AIVALT 162 (270)
T ss_dssp TTEEEEEEECCC-SEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGG-EEEEEE
T ss_pred CCeEEEEEECCC-CCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccC-EEEEEE
Confidence 456799999985 321 11111 10 11468899996554433322 22444555432 3 34 458999
Q ss_pred CCccC
Q 017486 343 MCHFD 347 (370)
Q Consensus 343 ~v~~~ 347 (370)
+++..
T Consensus 163 K~Dl~ 167 (270)
T 1h65_A 163 HAQFS 167 (270)
T ss_dssp CCSCC
T ss_pred CcccC
Confidence 99864
No 302
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=91.70 E-value=0.11 Score=51.49 Aligned_cols=66 Identities=6% Similarity=-0.064 Sum_probs=34.4
Q ss_pred CCCcEEEEcCCCCCChHH---------HHHhhHhCCCeEEEEecCCcch-HH---HHHHHHHHHHcCCCCeEEEEEcCCc
Q 017486 279 GELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKLA-FI---DVAKGVRMFSKLKVPCIAVVENMCH 345 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~---------l~~~~~~~~d~viiV~~p~~~s-~~---~~~~~~~~l~~~~~~~~gvV~N~v~ 345 (370)
..+.+.|+|||. ..+.. .+...+..+|.+++|....... .. ....+++.+. +.+ +-+|+||++
T Consensus 279 ~g~~l~liDT~G-~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~p-iIvV~NK~D 354 (476)
T 3gee_A 279 DKTMFRLTDTAG-LREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAK-FLTVANKLD 354 (476)
T ss_dssp TTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSE-EEEEEECTT
T ss_pred CCeEEEEEECCC-CCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCC-EEEEEECcC
Confidence 456799999985 32211 1111234579999998766532 22 3344444443 444 458999998
Q ss_pred cCC
Q 017486 346 FDA 348 (370)
Q Consensus 346 ~~~ 348 (370)
...
T Consensus 355 l~~ 357 (476)
T 3gee_A 355 RAA 357 (476)
T ss_dssp SCT
T ss_pred CCC
Confidence 643
No 303
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.59 E-value=0.22 Score=43.03 Aligned_cols=34 Identities=29% Similarity=0.240 Sum_probs=29.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
|+|= |--|+||||.+..|+..|...|++|++..-
T Consensus 3 I~~E-G~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 3 ITFE-GIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 4443 888999999999999999999999988753
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.54 E-value=0.13 Score=43.57 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=24.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+.|.++ |..|+||||++..||..+ .| .-++|+|
T Consensus 11 ~~I~l~-G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 11 INILIT-GTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp CEEEEE-CSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 467776 899999999999888752 24 5567776
No 305
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.53 E-value=0.7 Score=39.10 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=35.9
Q ss_pred CcEEEEcCCCCCC-hHHHHHhhHhCCCeEEEEecC-CcchHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTG-DIQLTLCQVVPLTAAVIVTTP-QKLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~-~~~l~~~~~~~~d~viiV~~p-~~~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
+.++++|++...+ ...+.......+|.+++|..- +..++..+......+.+ .+.+++ +|.|+++..
T Consensus 56 ~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pii-lV~NK~Dl~ 127 (192)
T 2cjw_A 56 ATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII-LVGNKSDLV 127 (192)
T ss_dssp EEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE-EEEECTTCG
T ss_pred EEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEE-EEEechhhh
Confidence 4567888864322 111111112235777777654 45566666666555543 255644 899999853
No 306
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.53 E-value=0.12 Score=47.97 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=30.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHH------------hCC----CcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLA------------GMG----ARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA------------~~G----~rVllID~D~~ 213 (370)
.++.|+ +..|+||||++.++|...+ ..| .+|++||++..
T Consensus 99 ~i~~i~-G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 99 SVTEFA-GVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 455555 8899999999999998643 235 79999999864
No 307
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.43 E-value=0.14 Score=43.78 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=26.5
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
..+++|+++ |-.|+||||++..|+..+ |. ..+|+|
T Consensus 13 ~~~~~I~l~-G~~GsGKsT~~~~L~~~~---g~--~~i~~d 47 (203)
T 1ukz_A 13 DQVSVIFVL-GGPGAGKGTQCEKLVKDY---SF--VHLSAG 47 (203)
T ss_dssp TTCEEEEEE-CSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence 345677777 999999999999998764 44 556665
No 308
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.43 E-value=0.13 Score=47.33 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=27.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+.+.+|-.|+||||++..|+..+ +.....||+|...
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~R 70 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTFK 70 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHhH
Confidence 556666999999999999997755 2346788887543
No 309
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.42 E-value=0.15 Score=43.10 Aligned_cols=35 Identities=40% Similarity=0.411 Sum_probs=26.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+|+++ |..|+||||++..|+.. .+...+.+|.|.
T Consensus 10 ~~i~l~-G~~GsGKSTl~~~La~~---~~~g~i~i~~d~ 44 (191)
T 1zp6_A 10 NILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSDD 44 (191)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTTH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHhc---cCCCeEEEcccc
Confidence 467666 99999999999888764 344566777663
No 310
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.30 E-value=0.27 Score=48.45 Aligned_cols=65 Identities=9% Similarity=0.017 Sum_probs=35.0
Q ss_pred CCCcEEEEcCCCCCChHH---------HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ---------LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~---------l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.+.|+|||. ..+.. .+...+..+|.+++|.............+++.+.. .+ +-+|.||++..
T Consensus 270 ~g~~v~liDT~G-~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~p-iivV~NK~Dl~ 343 (462)
T 3geh_A 270 GGIPVQVLDTAG-IRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RP-LILVMNKIDLV 343 (462)
T ss_dssp TTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SC-EEEEEECTTSS
T ss_pred CCEEEEEEECCc-cccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--Cc-EEEEEECCCCC
Confidence 556789999985 32111 01112334799999988765433333555555543 34 44899999864
No 311
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.23 E-value=0.2 Score=44.52 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC-----CCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-----GARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~-----G~rVllID~D~ 212 (370)
+.+|+++ |..|+||||++..|+..+... .+++.+++.|.
T Consensus 25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 4588998 999999999999999877321 24677888774
No 312
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.15 E-value=0.15 Score=43.43 Aligned_cols=36 Identities=36% Similarity=0.391 Sum_probs=26.4
Q ss_pred cCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 170 ~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.+++|+++ |..|+||||++..||.. |. .++|+|.
T Consensus 5 ~~~~~~I~i~-G~~GsGKST~~~~La~~----g~--~~id~d~ 40 (203)
T 1uf9_A 5 AKHPIIIGIT-GNIGSGKSTVAALLRSW----GY--PVLDLDA 40 (203)
T ss_dssp -CCCEEEEEE-ECTTSCHHHHHHHHHHT----TC--CEEEHHH
T ss_pred ccCceEEEEE-CCCCCCHHHHHHHHHHC----CC--EEEcccH
Confidence 3345678887 88999999999888763 54 4667774
No 313
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.08 E-value=0.25 Score=43.77 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+++.|+|. |-.|+||||++..|+..+.. |.+|+...
T Consensus 25 ~g~~i~i~-G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 25 MSAFITFE-GPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 34567666 99999999999999999988 88886553
No 314
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.07 E-value=0.24 Score=45.30 Aligned_cols=40 Identities=28% Similarity=0.207 Sum_probs=33.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
..+.++ |..|+||||+|..+|..+...+..+..+|+....
T Consensus 48 ~~~ll~-G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 48 GSFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp EEEEEE-SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred eEEEEE-CCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 356666 8999999999999999998878889999986543
No 315
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.86 E-value=0.14 Score=43.58 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=25.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+++|+++ |..|+||||++..||..+ | ...+|.|
T Consensus 12 ~~~I~l~-G~~GsGKsT~a~~L~~~l---~--~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFII-GGPGSGKGTQCEKLVEKY---G--FTHLSTG 44 (199)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence 4577777 899999999999999877 3 3456654
No 316
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.72 E-value=0.12 Score=42.19 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=28.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
|.++ |..|+|||++|..++....+.+...+ +++..
T Consensus 27 vll~-G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~ 61 (145)
T 3n70_A 27 VWLY-GAPGTGRMTGARYLHQFGRNAQGEFV-YRELT 61 (145)
T ss_dssp EEEE-SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred EEEE-CCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence 4555 99999999999999887777677777 88764
No 317
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.71 E-value=0.19 Score=43.86 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=20.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+.|.|. |..|+||||++..||..+
T Consensus 6 ~~I~l~-G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILI-GAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 456666 889999999999999887
No 318
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.63 E-value=0.091 Score=49.33 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+++.+ .|.+|+||||+|.++|.. .|.+|+.++++
T Consensus 124 sviLI-~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~ 157 (331)
T 2vhj_A 124 GMVIV-TGKGNSGKTPLVHALGEA---LGGKDKYATVR 157 (331)
T ss_dssp EEEEE-ECSCSSSHHHHHHHHHHH---HHTTSCCEEEE
T ss_pred cEEEE-EcCCCCCHHHHHHHHHHh---CCCCEEEEEec
Confidence 45544 599999999999999987 57889999983
No 319
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.49 E-value=0.24 Score=40.89 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=24.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.|.++ |-.|+||||++..|+..+ |.. ++|+|.
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~l---~~~--~i~~d~ 33 (168)
T 2pt5_A 2 RIYLI-GFMCSGKSTVGSLLSRSL---NIP--FYDVDE 33 (168)
T ss_dssp EEEEE-SCTTSCHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECcH
Confidence 46666 899999999999998877 444 456653
No 320
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.47 E-value=0.38 Score=42.85 Aligned_cols=38 Identities=13% Similarity=-0.036 Sum_probs=32.0
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
.++++..++ |.-|.||||.+..++..+..+|+||+++-
T Consensus 17 ~~g~l~v~~-G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 17 TRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp -CCEEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 355655555 88899999999999999999999999987
No 321
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.44 E-value=0.55 Score=40.41 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=42.6
Q ss_pred CCCcEEEEcCCCCCChH-----------HH--H-HhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCC
Q 017486 279 GELDYLVIDMPPGTGDI-----------QL--T-LCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMC 344 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~-----------~l--~-~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v 344 (370)
..+.+.|+|||+ ..+. .+ . +.....+|.+++|+.....-.......++.+.+.+.+++ +|+|++
T Consensus 77 ~~~~~~l~DtpG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i-~v~nK~ 154 (223)
T 4dhe_A 77 AEPVAHLVDLPG-YGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIH-SLLTKC 154 (223)
T ss_dssp TSCSEEEEECCC-CCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEE-EEEECG
T ss_pred CCCcEEEEcCCC-CCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEecc
Confidence 567899999985 3221 11 1 111112567888888765333445566778877788866 899999
Q ss_pred ccC
Q 017486 345 HFD 347 (370)
Q Consensus 345 ~~~ 347 (370)
+..
T Consensus 155 Dl~ 157 (223)
T 4dhe_A 155 DKL 157 (223)
T ss_dssp GGS
T ss_pred ccC
Confidence 864
No 322
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.41 E-value=0.67 Score=38.00 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=43.8
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC-----CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL-----KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~-----~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .++..+...++.+.+. +.+.+-+|.|+++..
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~ 128 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE 128 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence 3679999999643221222222446799999988764 3556666666666542 566566899999864
No 323
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.39 E-value=0.26 Score=45.61 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=31.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.+.++ |..|+||||++..++..+...|.+++.++++
T Consensus 39 ~lll~-G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 39 PIFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SEEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred eEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45566 8899999999999999998889999999875
No 324
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.38 E-value=0.19 Score=42.47 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=25.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+++|+++ |-.|+||||++..||..+ |.. .+|.|
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~La~~l---~~~--~i~~d 41 (196)
T 2c95_A 9 TNIIFVV-GGPGSGKGTQCEKIVQKY---GYT--HLSTG 41 (196)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh---CCe--EEcHH
Confidence 3567777 889999999999999877 443 55654
No 325
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.34 E-value=0.19 Score=44.49 Aligned_cols=40 Identities=23% Similarity=0.200 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID~D~~ 213 (370)
++.|.|. |-.|+||||++..|+..|.. .|++|.++--.|.
T Consensus 21 ~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 21 SMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 4566665 99999999999999999998 9999888444443
No 326
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.34 E-value=0.22 Score=43.96 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=25.6
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.++.|.|. |..|+||||++..||..+ |. ..+|+|
T Consensus 15 ~~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVLL-GPPGAGKGTQAPKLAKNF---CV--CHLATG 48 (233)
T ss_dssp CCCEEEEE-CCTTSSHHHHHHHHHHHH---TC--EEEEHH
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHh---CC--ceecHH
Confidence 34567776 899999999999999887 33 455553
No 327
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.32 E-value=0.33 Score=42.53 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCC-cEEEe
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 208 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~-rVllI 208 (370)
+.|+|. |-.|+||||.+..|+..|...|+ .|.+.
T Consensus 4 ~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 466666 88999999999999999999998 66544
No 328
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=90.13 E-value=0.93 Score=43.06 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=17.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLA 195 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA 195 (370)
++|++. |..|+||||+.-.|.
T Consensus 180 ~~V~lv-G~~naGKSTLln~L~ 200 (364)
T 2qtf_A 180 PSIGIV-GYTNSGKTSLFNSLT 200 (364)
T ss_dssp CEEEEE-CBTTSSHHHHHHHHH
T ss_pred cEEEEE-CCCCCCHHHHHHHHH
Confidence 467777 999999999987765
No 329
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.12 E-value=0.23 Score=41.84 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=24.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
++|+++ |-.|+||||++..||..+ |. ..||.|
T Consensus 4 ~~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 4 LVVFVL-GGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 466666 999999999999998876 44 346655
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.11 E-value=0.23 Score=41.74 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=24.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+.|.++ |-.|+||||++..||..+ |. ..+|+|
T Consensus 5 ~~I~l~-G~~GsGKST~~~~La~~l---~~--~~i~~d 36 (186)
T 3cm0_A 5 QAVIFL-GPPGAGKGTQASRLAQEL---GF--KKLSTG 36 (186)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence 466666 999999999999998876 43 456654
No 331
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.10 E-value=0.23 Score=43.27 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
++.|.+. |..|+||||++..||..+
T Consensus 4 ~~~I~l~-G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLI-GPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc
Confidence 3466666 899999999999999877
No 332
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.04 E-value=0.27 Score=42.59 Aligned_cols=39 Identities=26% Similarity=0.236 Sum_probs=30.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh------CCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~------~G~rVllID~D~ 212 (370)
+.++++. +..|+||||++..|+..+.. .+.+++.++.+.
T Consensus 25 G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3577777 99999999999999986654 356788888764
No 333
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.03 E-value=0.24 Score=46.68 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC--------CCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM--------GARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~--------G~rVllID~D 211 (370)
+.+.++ |.+|+||||++..++..+... +..++.+++.
T Consensus 46 ~~vll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 46 FSNLFL-GLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 456665 999999999999999998765 7888888864
No 334
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.98 E-value=0.2 Score=45.77 Aligned_cols=35 Identities=26% Similarity=0.149 Sum_probs=24.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+++|.++ |-.|+||||++..|+..+ .| ...||.|.
T Consensus 2 ~~~I~l~-G~~GsGKST~a~~L~~~~--~~--~~~i~~D~ 36 (301)
T 1ltq_A 2 KKIILTI-GCPGSGKSTWAREFIAKN--PG--FYNINRDD 36 (301)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHS--TT--EEEECHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhC--CC--cEEecccH
Confidence 3455555 999999999999888732 23 55666663
No 335
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.91 E-value=0.23 Score=45.59 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=27.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
+.+.++ |.+|+|||++|..+|..+ |.+++.+++
T Consensus 37 ~~lLl~-GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 37 LILGIW-GGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp SEEEEE-ECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 456666 999999999999999888 778888875
No 336
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=89.88 E-value=0.45 Score=45.75 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=47.8
Q ss_pred CcEEEEcCCCCCCh-HHHHHhhHhCCCeEEEEecCCcch-HHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 281 LDYLVIDMPPGTGD-IQLTLCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 281 yD~VIIDtpp~~~~-~~l~~~~~~~~d~viiV~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
+.+.|+|||. ..+ .......+..+|.+++|+...... ..++.+.+..++..+.+.+-+|+|+++..
T Consensus 75 ~~~~iiDtPG-h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 75 RRISFIDAPG-HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp EEEEEEECCC-CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ceEEEEECCC-cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 6799999985 433 223333345689999999887754 67777777888777775566999999864
No 337
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.81 E-value=0.28 Score=43.52 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=26.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC----CCcEEEee
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM----GARVGIFD 209 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~----G~rVllID 209 (370)
+.|+|. |-.|+||||++..|+..|... |++|.+.-
T Consensus 26 ~~I~~e-G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFE-GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEE-CCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 456665 999999999999999999988 99997654
No 338
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.71 E-value=0.34 Score=49.12 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=29.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEe
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllI 208 (370)
+.+.| .|-+|+||||++..++..+...|++|+++
T Consensus 205 ~~~~I-~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVL-TGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEE-ECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEE-EcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 34444 49999999999999999999999999987
No 339
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.63 E-value=0.34 Score=43.27 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=28.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCc-EEEe
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR-VGIF 208 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~r-VllI 208 (370)
+.|+|. |-.|+||||++..|+..|...|.+ |.+.
T Consensus 28 ~~i~~e-G~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 28 KFIVIE-GLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CEEEEE-ESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 466665 888999999999999999999999 6554
No 340
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.58 E-value=0.38 Score=43.94 Aligned_cols=37 Identities=27% Similarity=0.325 Sum_probs=29.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCC----cEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGA----RVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~----rVllID~D 211 (370)
..+.++ |..|+|||++|..+|..+...+. .++.+++.
T Consensus 68 ~~vll~-G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 68 LHMSFT-GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 456666 89999999999999999987654 67777654
No 341
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.57 E-value=0.27 Score=41.17 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+.|.++ |-.|+||||++..||..+
T Consensus 12 ~~i~i~-G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLT-GTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred CeEEEE-eCCCCCHHHHHHHHHHHh
Confidence 456665 999999999999998876
No 342
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.55 E-value=0.14 Score=42.95 Aligned_cols=30 Identities=30% Similarity=0.254 Sum_probs=18.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEE
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVl 206 (370)
+++|.++ |-.|+||||++..||..+ |..++
T Consensus 5 ~~~I~l~-G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 5 SPIIWIN-GPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp CCEEEEE-CCC----CHHHHHHHHHS---TTCEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCEE
Confidence 3466666 999999999999987755 55554
No 343
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.44 E-value=0.28 Score=42.58 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
.+|+++ |..|+||||++..|+..+
T Consensus 6 ~~i~i~-G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITID-GPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 478888 899999999999998766
No 344
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.28 E-value=1.2 Score=37.76 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=43.1
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+....+..+|.+++|..... .++..+...++.+.+ .+.++ -+|.|+++..
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~NK~Dl~ 147 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ-LLIGNKSDLS 147 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTCG
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCccc
Confidence 3679999998643222233333446799999988664 456666666666654 23444 4899999864
No 345
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=89.25 E-value=0.55 Score=47.92 Aligned_cols=69 Identities=10% Similarity=0.079 Sum_probs=48.3
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcch-------HHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLA-------FIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s-------~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.++|+|||+--.........+..+|.+++|+...... .......+..+...+++.+-+|+|+++..
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 5678999999853332333333344589999999887632 23566677777788888677999999864
No 346
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=89.23 E-value=0.35 Score=36.20 Aligned_cols=71 Identities=17% Similarity=0.283 Sum_probs=52.4
Q ss_pred cccHHHHHHHhccCCCCCCCCCccccCCeeEEEEecCCCeEEEEEEeCCCCCCcHHH-HHHHHHHHhh-cCCCcceeEE
Q 017486 74 GTAENDVLKALSQIIDPDFGTDIVSCGFVKDMQINEALGEVSFRLELTTPACPIKDM-FEQRANEVVL-AIPWVNKVNV 150 (370)
Q Consensus 74 ~~~~~~v~~~L~~V~dPel~~div~lGlV~~v~v~~~~~~v~v~l~lt~~~cP~~~~-i~~~i~e~L~-~l~gv~~v~V 150 (370)
....+.|.++|.+ ..|-+.. +-|=|+-+.+++ +.|.|.+.-.+.|||.+.. +...|+..|. .+|.++.+..
T Consensus 6 ~~~~~~I~~~L~~-IRP~L~~---dGGdvelv~v~~--g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~ 78 (88)
T 1xhj_A 6 PTMFDQVAEVIER-LRPFLLR---DGGDCTLVDVED--GIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQ 78 (88)
T ss_dssp SCHHHHHHHHHHH-HHHHHHH---HSCEEEEEECCS--SEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred HHHHHHHHHHHHH-hcHHHHh---cCCeEEEEEEEC--CEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEe
Confidence 3467889999988 5575532 345566666655 8999999999999998776 6668888885 5788877653
No 347
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.21 E-value=0.31 Score=46.04 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=31.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC------CCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~------G~rVllID~D~ 212 (370)
+.++.++ |..|+||||++..++..++.. |.+|+.||...
T Consensus 131 G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 131 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4577777 899999999999999887432 35889999864
No 348
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.14 E-value=0.07 Score=46.92 Aligned_cols=33 Identities=33% Similarity=0.401 Sum_probs=25.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+-.|++| |.-|+||||++..|+. .|. -+||+|.
T Consensus 9 ~~~iglT-GgigsGKStv~~~l~~----~g~--~vidaD~ 41 (210)
T 4i1u_A 9 MYAIGLT-GGIGSGKTTVADLFAA----RGA--SLVDTDL 41 (210)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHH----CCC--cEEECcH
Confidence 3478898 8889999999877654 565 4578886
No 349
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.10 E-value=0.78 Score=37.67 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc---CCCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK---LKVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~---~~~~~~gvV~N~v~~~~ 348 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .+...+...+..+.. .+.+ +-+|.|+++...
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 130 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVA-LMLLGNKVDSAH 130 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECCSTTS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECcccCc
Confidence 4678999998643222222222445799999887654 345556666665554 3455 448999999643
No 350
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.05 E-value=0.26 Score=46.17 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=30.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC---CCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM---GARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~---G~rVllID~D 211 (370)
+.+.++ |..|+||||++..++..+... +..++.+++.
T Consensus 46 ~~vli~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 46 NNIFIY-GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCEEEE-ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 456666 999999999999999988765 7788888874
No 351
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.97 E-value=0.29 Score=47.33 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=31.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh------CCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAG------MGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~------~G~rVllID~D~ 212 (370)
+.++.|+ +..|+||||++.+|+..... .+.+|++||...
T Consensus 178 Gei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4577777 99999999999999876653 467899999875
No 352
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.96 E-value=2.3 Score=37.36 Aligned_cols=36 Identities=17% Similarity=0.015 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+.+..++ +--|.||||....++..+..+|++|+++-
T Consensus 28 G~I~vit-G~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 28 GWIECIT-GSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 3455554 77899999999999999999999999984
No 353
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.88 E-value=0.4 Score=55.20 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=35.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
++.+.++ +-.|+|||++|.++|....++|.+|++||++-.
T Consensus 1427 g~~vll~-GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 4566666 999999999999999999999999999999853
No 354
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.80 E-value=0.3 Score=41.45 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~L 198 (370)
.|++. |-.|+||||++..||..|
T Consensus 2 ~I~i~-G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIF-GTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH
T ss_pred EEEEE-CCCccCHHHHHHHHHHhc
Confidence 46666 889999999999999887
No 355
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.66 E-value=0.38 Score=41.52 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~L 198 (370)
.|+++ |-.|+||||++..||..+
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLM-GLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh
Confidence 35565 999999999999998776
No 356
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.63 E-value=0.59 Score=38.70 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=37.2
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++..
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 126 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE-KMILGNKCDVN 126 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEEC--CC
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECccCC
Confidence 3678999998632211222222335799999887654 4566676666666543 444 45899999864
No 357
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.61 E-value=0.32 Score=45.83 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=27.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
++|.|+ |-.|+||||++..||..+ ..-+||+|-.+
T Consensus 41 ~lIvI~-GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLM-GATGTGKSRLSIDLAAHF-----PLEVINSDKMQ 75 (339)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHTTS-----CEEEEECCSST
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHC-----CCcEEcccccc
Confidence 455555 889999999999988754 46789999653
No 358
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.58 E-value=0.57 Score=43.52 Aligned_cols=40 Identities=35% Similarity=0.356 Sum_probs=32.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC-C-CcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-G-ARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~-G-~rVllID~D~~ 213 (370)
+.+|++. |..|+||||++..|+..+... | .+|.+|-.|..
T Consensus 90 g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 90 PFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 4588887 999999999999999988753 4 57888877653
No 359
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.51 E-value=0.34 Score=41.91 Aligned_cols=29 Identities=17% Similarity=-0.020 Sum_probs=22.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEE
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVll 207 (370)
.|.|+ |..|+||||++..||..+ |..++-
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~---g~~~i~ 30 (214)
T 1e4v_A 2 RIILL-GAPVAGKGTQAQFIMEKY---GIPQIS 30 (214)
T ss_dssp EEEEE-ESTTSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh---CCeEEe
Confidence 35555 889999999999999877 555543
No 360
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=88.41 E-value=0.3 Score=41.22 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAY 196 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~ 196 (370)
+.+|+++ |..|+||||++..|+.
T Consensus 2 g~ii~l~-G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIIT-GPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCcHHHHHHHHhc
Confidence 3466666 9999999999999975
No 361
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.18 E-value=0.39 Score=43.81 Aligned_cols=34 Identities=38% Similarity=0.446 Sum_probs=26.0
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+++|+|+ |-.|+||||++..|+. + |. -+||+|.
T Consensus 74 ~~~iI~I~-G~~GSGKSTva~~La~-l---g~--~~id~D~ 107 (281)
T 2f6r_A 74 GLYVLGLT-GISGSGKSSVAQRLKN-L---GA--YIIDSDH 107 (281)
T ss_dssp TCEEEEEE-ECTTSCHHHHHHHHHH-H---TC--EEEEHHH
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHH-C---CC--cEEehhH
Confidence 45678888 8899999999999983 3 65 4577764
No 362
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.17 E-value=0.41 Score=44.72 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=25.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.+.+.+|-.|+||||++..||..+ ..-+|++|-.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcc
Confidence 344555999999999999998765 3578888853
No 363
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=88.10 E-value=0.57 Score=44.00 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~ 212 (370)
.+.|+ |..|+||||++..++..+... +..++.+++..
T Consensus 46 ~~li~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEE-CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 56665 999999999999999988776 68888888754
No 364
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=87.98 E-value=0.44 Score=41.48 Aligned_cols=28 Identities=25% Similarity=0.151 Sum_probs=22.2
Q ss_pred cCCCeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 170 QKISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 170 ~~~~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
..++++|+|+ ||.|+||+|+|-.+...+
T Consensus 8 ~~~~~II~it-Gk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 8 GAPRLVLLFS-GKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCCSEEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEE-CCCCCChHHHHHHHHHHc
Confidence 3456688887 999999999998876655
No 365
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.98 E-value=0.39 Score=48.37 Aligned_cols=39 Identities=38% Similarity=0.458 Sum_probs=32.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCC-CcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMG-ARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G-~rVllID~D~ 212 (370)
+.+|+++ |..|+||||++..||..+...+ .++.++|.|.
T Consensus 369 G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 4577777 8899999999999999997654 5788899875
No 366
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.95 E-value=0.31 Score=43.63 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=30.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
-+.++ |..|+|||++|..++..+.+.+.+++.+++..
T Consensus 31 ~vll~-G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 31 PVLII-GERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CEEEE-CCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CEEEE-CCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 34555 99999999999999988877778899998864
No 367
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.91 E-value=0.33 Score=45.55 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=30.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC------CCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~------G~rVllID~D~ 212 (370)
+.+.++ |.+|+||||++..++..+... +..++.+++..
T Consensus 45 ~~vll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 45 SNALLY-GLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCEEEC-BCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 355555 999999999999999998764 67788888754
No 368
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.87 E-value=0.52 Score=41.91 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
++.|.++ |-.|+||||++..|+..+
T Consensus 29 ~~~I~l~-G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFL-GAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 3456665 999999999999998776
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.77 E-value=0.31 Score=42.42 Aligned_cols=25 Identities=20% Similarity=0.085 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
++.|.|. |-.|+||||++..||..+
T Consensus 5 ~~~I~l~-G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMIS-GAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEE-ESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 3456666 889999999999999877
No 370
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=87.58 E-value=0.54 Score=46.22 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=30.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
..+|.++ |-.|+||||++..||..+...+.++..++.|
T Consensus 39 ~~~Ivlv-GlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 39 PTLIVMV-GLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred cEEEEEE-CCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 3345554 9999999999999999998888787776644
No 371
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.46 E-value=0.61 Score=45.66 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCC-cEEEe
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIF 208 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~-rVllI 208 (370)
..+..|-.|+||||++..++..|.+.|+ +|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 4445599999999999999999998887 67776
No 372
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=87.44 E-value=0.93 Score=41.48 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=41.6
Q ss_pred CCCcEEEEcCCCCCC-------------hHHHHHhhHhCCCeEEEEecCCc--chHHHHHHHHHHHHcCCCCeEEEEEcC
Q 017486 279 GELDYLVIDMPPGTG-------------DIQLTLCQVVPLTAAVIVTTPQK--LAFIDVAKGVRMFSKLKVPCIAVVENM 343 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~-------------~~~l~~~~~~~~d~viiV~~p~~--~s~~~~~~~~~~l~~~~~~~~gvV~N~ 343 (370)
..++++|+|||+... ........+..+|.+++|+.+.. ....+...+++.+...+.+++ +|+|+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i-~v~NK 207 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTI-GVITK 207 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEE-EEEEC
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEE-EEEcC
Confidence 347899999996332 01112222345798888876522 111223466777777777765 88999
Q ss_pred CccCC
Q 017486 344 CHFDA 348 (370)
Q Consensus 344 v~~~~ 348 (370)
++...
T Consensus 208 ~Dl~~ 212 (315)
T 1jwy_B 208 LDLMD 212 (315)
T ss_dssp TTSSC
T ss_pred cccCC
Confidence 98643
No 373
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.43 E-value=0.86 Score=42.40 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=26.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+++|. .+|-.|+||||++..||..+ ..-+|.+|-.
T Consensus 10 ~~~i~-i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIF-LMGPTASGKTALAIELRKIL-----PVELISVDSA 44 (316)
T ss_dssp CEEEE-EECCTTSCHHHHHHHHHHHS-----CEEEEECCTT
T ss_pred CcEEE-EECCCccCHHHHHHHHHHhC-----CCcEEecccc
Confidence 34554 45999999999999998764 3567888853
No 374
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.40 E-value=0.29 Score=42.80 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+.|.|. |..|+||||++..||..+
T Consensus 8 ~~I~l~-G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIM-GAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHHHS
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHc
Confidence 466666 899999999999998765
No 375
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.35 E-value=0.63 Score=46.43 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=32.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+.+++++ |..|+||||++..++..+...|.+++.+...
T Consensus 281 G~i~~i~-G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 281 DSIILAT-GATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3467776 9999999999999999998889899888764
No 376
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.33 E-value=0.47 Score=41.48 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~L 198 (370)
.|.|. |-.|+||||++..||..+
T Consensus 2 ~I~l~-G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIF-GPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh
Confidence 35555 999999999999999877
No 377
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=87.22 E-value=0.4 Score=48.12 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=19.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAY 196 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~ 196 (370)
.++|+|+ |-||+||||+|..++.
T Consensus 152 ~~vv~I~-G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLH-GRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHH
Confidence 4688888 9999999999998875
No 378
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=87.18 E-value=0.24 Score=42.22 Aligned_cols=34 Identities=32% Similarity=0.334 Sum_probs=25.5
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCc--EEEeeC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGAR--VGIFDA 210 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~r--VllID~ 210 (370)
+.++ |..|+|||+++..++..+...+.+ .+-+++
T Consensus 41 ~ll~-G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 41 LLFS-GPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 5555 999999999999999998765544 444443
No 379
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.16 E-value=0.46 Score=42.12 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+.+|++. |..|+||||++..||..+
T Consensus 27 ~~~i~l~-G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVIL-GPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 4578777 999999999999999776
No 380
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=87.11 E-value=0.42 Score=46.51 Aligned_cols=42 Identities=17% Similarity=0.104 Sum_probs=26.3
Q ss_pred CCCeEEEEecCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 304 PLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 304 ~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.+|.+++|...... +..+ .++.+.+.+.+.+++ +|+|+++..
T Consensus 263 ~ad~vllv~d~~~~~~~~~-~~i~~~l~~~~~~~i-lv~NK~Dl~ 305 (439)
T 1mky_A 263 KADVVVIVLDATQGITRQD-QRMAGLMERRGRASV-VVFNKWDLV 305 (439)
T ss_dssp HCSEEEEEEETTTCCCHHH-HHHHHHHHHTTCEEE-EEEECGGGS
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHHHcCCCEE-EEEECccCC
Confidence 45778877765432 2222 455666666676654 889998864
No 381
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=87.09 E-value=0.41 Score=41.31 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=18.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~L 198 (370)
.|.++ |-.|+||||++..||..+
T Consensus 2 ~I~l~-G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLM-GLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHS
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh
Confidence 35565 999999999999987654
No 382
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=87.07 E-value=0.62 Score=47.76 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=30.8
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
+++..|-+|+|||++.+++...+.+.|.+||++--
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 66677999999999999999999999999998753
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.97 E-value=0.58 Score=40.46 Aligned_cols=32 Identities=47% Similarity=0.595 Sum_probs=24.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+|+++ |..|+||||++..|+. .|. -++|+|.
T Consensus 5 ~~I~i~-G~~GSGKST~~~~L~~----lg~--~~id~D~ 36 (218)
T 1vht_A 5 YIVALT-GGIGSGKSTVANAFAD----LGI--NVIDADI 36 (218)
T ss_dssp EEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEccH
Confidence 477777 9999999999988875 454 5677763
No 384
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.94 E-value=0.87 Score=40.26 Aligned_cols=35 Identities=14% Similarity=0.033 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+-+.++ |..|+|||++|..+|..+ +.+++.+++..
T Consensus 40 ~~vll~-G~~GtGKT~la~~la~~~---~~~~~~~~~~~ 74 (262)
T 2qz4_A 40 KGALLL-GPPGCGKTLLAKAVATEA---QVPFLAMAGAE 74 (262)
T ss_dssp CEEEEE-SCTTSSHHHHHHHHHHHH---TCCEEEEETTT
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEechHH
Confidence 356666 999999999999998866 66788887754
No 385
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=86.93 E-value=1.2 Score=37.58 Aligned_cols=68 Identities=12% Similarity=-0.031 Sum_probs=40.4
Q ss_pred CCCcEEEEcCCCCCChHHHH---HhhHhCCCeEEEEecCCcch---HHHHHHHHHHHH--cCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLT---LCQVVPLTAAVIVTTPQKLA---FIDVAKGVRMFS--KLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~---~~~~~~~d~viiV~~p~~~s---~~~~~~~~~~l~--~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|......... ...+..+|.+++|....... ...+...+..+. ..+.++ -+|.|+++-.
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~pi-ilv~nK~Dl~ 142 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNF-EVFIHKVDGL 142 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEE-EEEEECGGGS
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcE-EEEEeccccC
Confidence 46789999999643211111 12244579999998877743 334444444432 225554 4899999953
No 386
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=86.81 E-value=0.85 Score=44.31 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=44.0
Q ss_pred cEEEEcCCCCCCh-------HHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 282 DYLVIDMPPGTGD-------IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 282 D~VIIDtpp~~~~-------~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
.+.|+|||.-... .......+..+|.+++|+..+. .....+.++.+.+.+.+++ +|+|+++...
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~--~~~~~~~l~~l~~~~~piI-vV~NK~Dl~~ 154 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP--TPYEDDVVNLFKEMEIPFV-VVVNKIDVLG 154 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC--CHHHHHHHHHHHHTTCCEE-EECCCCTTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC--hHHHHHHHHHHHhcCCCEE-EEEeCcCCCC
Confidence 6899999863211 1112223445799999998733 3456778888888888866 9999998654
No 387
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.64 E-value=0.95 Score=39.11 Aligned_cols=42 Identities=14% Similarity=-0.002 Sum_probs=32.0
Q ss_pred cccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 168 ~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
....|+++..++ |.-|.||||...+.+..+..+|++|+++-.
T Consensus 15 ~~~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 15 GSKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp ----CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 344566666555 888899999999999988889999999973
No 388
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.48 E-value=0.96 Score=40.81 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=29.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC-CCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-GARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~-G~rVllID~D~ 212 (370)
+.+++|+ |..|+||||+...|+..+... ..++.+.+-+.
T Consensus 25 g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 25 MGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp SEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 4577777 889999999999999988654 45777666543
No 389
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.45 E-value=0.69 Score=41.94 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=29.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
+-+.++ |..|+|||+++..+|..+ +.+++.+++...
T Consensus 51 ~~vll~-G~~GtGKT~la~~la~~l---~~~~~~i~~~~~ 86 (310)
T 1ofh_A 51 KNILMI-GPTGVGKTEIARRLAKLA---NAPFIKVEATKF 86 (310)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEcchhc
Confidence 356666 999999999999999887 678888887543
No 390
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=86.44 E-value=0.58 Score=39.60 Aligned_cols=67 Identities=13% Similarity=0.149 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|..-....+....+..+|.+++|..... .++..+...+..+.+. +.+ +-+|.|+++..
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 151 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN-KLLVGNKCDLT 151 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE-EEEC-CCSSCC
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC-EEEEEECccCC
Confidence 3678999998632211111122345788888877554 4567777777777665 444 44889999864
No 391
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=86.31 E-value=0.64 Score=45.73 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=42.9
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchH-------HHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAF-------IDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|||. ..+.. .....+..+|.+++|+......+ ....+.+..+...+++.+-+++|+++..
T Consensus 119 ~~~~~~iiDtPG-h~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPG-HKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCC-cHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 456799999995 43321 22222345799999998776432 2455666667778888555899999964
No 392
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=86.08 E-value=0.66 Score=47.14 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=44.5
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|||.-.....+....+..+|.+++|+....--..+....+..+...++|++ +++|+++..
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiI-VViNKiDl~ 135 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFV-VAANKIDRI 135 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEE-EEEECGGGS
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEE-EEecccccc
Confidence 3469999999532211111112334799999998776433455666777778899865 999999974
No 393
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.07 E-value=0.65 Score=40.80 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+|+|.+. |-+|+||+|.|..||..+
T Consensus 29 ~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 4677777 899999999999999876
No 394
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.03 E-value=0.82 Score=45.58 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=27.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHH-HHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLA-YTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA-~~LA~~G~rVllID~D~ 212 (370)
+.++++. |..|+||||++..++ ..+...+...+.|+...
T Consensus 39 Ge~~~l~-G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 39 GRSTLVS-GTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 4588888 999999999999953 22333355678887654
No 395
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=85.81 E-value=0.57 Score=45.70 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=31.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM--GARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~--G~rVllID~D 211 (370)
.+.+.++ |..|+||||++..+|..+... +.+++.+++.
T Consensus 130 ~~~lll~-Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIY-GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEE-CSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3456666 899999999999999998765 8889988864
No 396
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=85.77 E-value=0.78 Score=46.65 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=43.0
Q ss_pred CCCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..|.+.|+|||. ..+.. .....+..+|.+++|+........+....+..+...+++++ +|+|+++..
T Consensus 69 ~~~~l~liDTPG-h~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiI-vViNKiDl~ 136 (599)
T 3cb4_D 69 ETYQLNFIDTPG-HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVV-PVLNKIDLP 136 (599)
T ss_dssp CEEEEEEEECCC-CGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEE-EEEECTTST
T ss_pred CeEEEEEEECCC-chHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EeeeccCcc
Confidence 357899999985 44332 22233445799999988755322333444445556688755 899999864
No 397
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.52 E-value=0.91 Score=43.25 Aligned_cols=35 Identities=34% Similarity=0.318 Sum_probs=30.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
++|+ |..|.||||+...++..+...|.+|+++|-+
T Consensus 38 ~~i~-G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 38 WTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp EEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEE-cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4454 8999999999999999888889999999865
No 398
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=85.44 E-value=0.51 Score=39.68 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=20.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+++++++ |..|+||||++..|+..+
T Consensus 5 g~~i~i~-GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLL-GAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 3567666 999999999999988765
No 399
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=85.32 E-value=0.63 Score=40.17 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=20.6
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
.+++|+++ |-.|+||||++..|+..+
T Consensus 7 ~g~~i~l~-GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLS-GPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEE-CCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 34577776 999999999998887654
No 400
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.23 E-value=0.64 Score=44.11 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=27.5
Q ss_pred eCCCCChHHHHHHHHHHHHHhC------CCcEEEeeCCC
Q 017486 180 SCKGGVGKSTVAVNLAYTLAGM------GARVGIFDADV 212 (370)
Q Consensus 180 S~kGGvGKTTla~nLA~~LA~~------G~rVllID~D~ 212 (370)
.|.+|+||||++..++..+... +..++.+++..
T Consensus 58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 5999999999999999988753 67788888753
No 401
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=85.10 E-value=0.84 Score=39.06 Aligned_cols=67 Identities=10% Similarity=0.082 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|............+..+|.+++|..... .++..+...++.+.. .+.+ +-+|.|+++..
T Consensus 83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl~ 154 (217)
T 2f7s_A 83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLP 154 (217)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTCG
T ss_pred eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCccc
Confidence 5779999998532212222233446799999987654 445555555555543 2334 55899999863
No 402
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.08 E-value=1.2 Score=39.52 Aligned_cols=33 Identities=18% Similarity=0.080 Sum_probs=25.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
-+.++ |..|+||||++..+|..+ +..++.+++.
T Consensus 47 ~vll~-G~~GtGKT~la~~la~~~---~~~~~~i~~~ 79 (257)
T 1lv7_A 47 GVLMV-GPPGTGKTLLAKAIAGEA---KVPFFTISGS 79 (257)
T ss_dssp EEEEE-CCTTSCHHHHHHHHHHHH---TCCEEEECSC
T ss_pred eEEEE-CcCCCCHHHHHHHHHHHc---CCCEEEEeHH
Confidence 46666 899999999999998876 5567767653
No 403
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=84.97 E-value=2.9 Score=33.53 Aligned_cols=68 Identities=24% Similarity=0.156 Sum_probs=37.2
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHcC----CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSKL----KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~~----~~~~~gvV~N~v~~~ 347 (370)
..+.+.++|+|.......+.......+|.+++|...+ ..++..+...+..+.+. +.+++ +|.|+++..
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 119 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII-LVGNKSDLV 119 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEE-EEEECTTCC
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEEeccccc
Confidence 3467889999863322222222234568888887654 44566677666666543 55654 899999864
No 404
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=84.89 E-value=0.63 Score=41.58 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
.+.+|+++ |-.|+||||++..||..|
T Consensus 26 ~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 34688888 889999999999998655
No 405
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.57 E-value=0.47 Score=40.74 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
++|.++ |..|+||||++..|+..+
T Consensus 13 ~~i~l~-G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVC-GPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 466665 899999999999998766
No 406
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=84.49 E-value=0.61 Score=43.34 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=29.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
++++++ |.-|+||||+...|.... .|+|+.+|.-|..
T Consensus 5 ~v~~i~-G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G 41 (318)
T 1nij_A 5 AVTLLT-GFLGAGKTTLLRHILNEQ--HGYKIAVIENEFG 41 (318)
T ss_dssp EEEEEE-ESSSSSCHHHHHHHHHSC--CCCCEEEECSSCC
T ss_pred cEEEEE-ecCCCCHHHHHHHHHhhc--CCCcEEEEEecCc
Confidence 466666 888999999988877653 6899999998864
No 407
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.48 E-value=0.67 Score=39.37 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+++|+++ |..|+||||++..|+..+
T Consensus 6 g~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 3477777 889999999998887765
No 408
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=84.42 E-value=0.74 Score=40.87 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=31.0
Q ss_pred cccCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 168 GLQKISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 168 ~~~~~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
....|+|++.||++-||.|+ .+|..|+++|.+|+++|-+..
T Consensus 17 ~~~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~ 57 (251)
T 3orf_A 17 RGSHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN 57 (251)
T ss_dssp -----CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred cccccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence 34567889999988888886 577888999999999997754
No 409
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.40 E-value=0.76 Score=39.35 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMG 202 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G 202 (370)
+++++ |..|+||||+...|+..+...|
T Consensus 3 ~i~i~-G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLT-GPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEE-SCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEE-CCCCChHHHHHHHHHhhcccCC
Confidence 67777 9999999999999999988666
No 410
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.40 E-value=4 Score=38.00 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=25.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEee
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFD 209 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID 209 (370)
+..++++ |..|+||||+...|+..+.... ..+.+|
T Consensus 171 g~~v~i~-G~~GsGKTTll~~l~g~~~~~~-g~i~i~ 205 (330)
T 2pt7_A 171 GKNVIVC-GGTGSGKTTYIKSIMEFIPKEE-RIISIE 205 (330)
T ss_dssp TCCEEEE-ESTTSCHHHHHHHGGGGSCTTS-CEEEEE
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCCCcCCC-cEEEEC
Confidence 3577777 7889999999988887765433 444554
No 411
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=84.39 E-value=0.97 Score=45.44 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=43.1
Q ss_pred cEEEEcCCCCCCh-----------HHHHHhhHhCCCeEEEEecCCcc-hHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 282 DYLVIDMPPGTGD-----------IQLTLCQVVPLTAAVIVTTPQKL-AFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 282 D~VIIDtpp~~~~-----------~~l~~~~~~~~d~viiV~~p~~~-s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
.++|||||+-... .......+..+|.+++|+.+... ........++.+.+.+.++ -+|+|+++..
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pv-ilVlNK~Dl~ 231 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKI-RVVLNKADMV 231 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGE-EEEEECGGGS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCE-EEEEECCCcc
Confidence 5899999963321 11222223457999999998763 3455667777777766664 4999999864
No 412
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=84.37 E-value=1.2 Score=37.45 Aligned_cols=67 Identities=9% Similarity=0.041 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHc------CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSK------LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~------~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|+......+....+..+|.+++|..... .++..+...+..+.+ .+.+ +-+|.|+++..
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~ 145 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR-AVLVANKTDLP 145 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCE-EEEEEECC---
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCc-EEEEEECcccc
Confidence 5679999998532111222222335799999887654 355667777766664 2444 45899999864
No 413
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=84.05 E-value=0.71 Score=39.19 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+.+|+++ |-.|+||||++..|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 3578887 899999999999988764
No 414
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.85 E-value=0.94 Score=45.03 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=28.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.+.++ |..|+||||+|..+|..+ |..++-+++..
T Consensus 78 ~~lLL~-GppGtGKTtla~~la~~l---~~~~i~in~s~ 112 (516)
T 1sxj_A 78 RAAMLY-GPPGIGKTTAAHLVAQEL---GYDILEQNASD 112 (516)
T ss_dssp SEEEEE-CSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEEeCCC
Confidence 466665 999999999999998877 78888887743
No 415
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.74 E-value=1.2 Score=41.33 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=28.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.+-|.++ |..|+|||++|..+|..+ .+..++.+++.
T Consensus 45 ~~~iLL~-GppGtGKT~la~ala~~~--~~~~~~~i~~~ 80 (322)
T 1xwi_A 45 WRGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISSS 80 (322)
T ss_dssp CSEEEEE-SSSSSCHHHHHHHHHHHT--TSCEEEEEECC
T ss_pred CceEEEE-CCCCccHHHHHHHHHHHc--CCCcEEEEEhH
Confidence 3567777 999999999999998876 35677777764
No 416
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.69 E-value=0.57 Score=39.97 Aligned_cols=32 Identities=22% Similarity=0.130 Sum_probs=26.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
|.|+ |-.|+||||+|..||.. |.+++.|+...
T Consensus 2 ilV~-Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVT-GGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEE-ECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEE-CCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 4555 78899999999998754 77899999875
No 417
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=83.64 E-value=0.95 Score=43.51 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=43.5
Q ss_pred CcEEEEcCCCCCChHHHH-HhhHhCCCeEEEEecCCcch-HHHHHHHHHHHHcCCCCeEEEEEcCCccCC
Q 017486 281 LDYLVIDMPPGTGDIQLT-LCQVVPLTAAVIVTTPQKLA-FIDVAKGVRMFSKLKVPCIAVVENMCHFDA 348 (370)
Q Consensus 281 yD~VIIDtpp~~~~~~l~-~~~~~~~d~viiV~~p~~~s-~~~~~~~~~~l~~~~~~~~gvV~N~v~~~~ 348 (370)
+.+.|+|||. ..+.... ...+..+|.+++|+...... ..+..+.+..++..+.+.+-+|+|+++...
T Consensus 81 ~~i~iiDtPG-h~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 81 RRVSFVDSPG-HETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVD 149 (408)
T ss_dssp EEEEEEECSS-HHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSC
T ss_pred cEEEEEECCC-HHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCC
Confidence 6799999985 4332211 12223469999999887532 445555566666777765669999999643
No 418
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=83.54 E-value=1.1 Score=45.56 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=26.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHh----CCCcEEEe
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIF 208 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~----~G~rVllI 208 (370)
+.+..|.+|+||||+...+...+.+ .|.+|+++
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 4455599999999999999888874 46678775
No 419
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.52 E-value=1.4 Score=36.82 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=42.8
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCccCC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFDA 348 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~~ 348 (370)
.+.+.|+|+|.......+.......+|.+++|..... .++..+. ..+..+.+. +.+++ +|.|+++...
T Consensus 65 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~ 136 (194)
T 2atx_A 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFL-LIGTQIDLRD 136 (194)
T ss_dssp EEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEE-EEEECTTSTT
T ss_pred EEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEEChhhcc
Confidence 4678999998633221222222335799999887654 4466665 556666654 66655 9999998643
No 420
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=83.50 E-value=1.3 Score=39.89 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=40.2
Q ss_pred CCeEEEEEeCC-CCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCC
Q 017486 172 ISNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (370)
Q Consensus 172 ~~kvI~v~S~k-GGvGKTTla~nLA~~LA~~G~rVllID~D~~~~s 216 (370)
.+|-|.|+++- .|.||-.+|+.|+..|..+|+||-.+=.||+-+-
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDPYlNv 67 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINI 67 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEECBCCC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCCceee
Confidence 46888888877 8999999999999999999999999999997643
No 421
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.38 E-value=1.2 Score=39.90 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=25.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
+.+.++ |..|+|||++|..+|..+ |.+.+.+++
T Consensus 65 ~~vLl~-G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 65 VSVLLE-GPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp EEEEEE-CSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred eEEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 456666 999999999999998874 567666654
No 422
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=83.23 E-value=0.99 Score=42.65 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=28.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
..|.++ |..|+|||++|..+|..+ |.+...+|+..
T Consensus 73 ~~ill~-Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILLI-GPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 356666 899999999999999877 67888888754
No 423
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=83.12 E-value=0.83 Score=39.52 Aligned_cols=32 Identities=25% Similarity=0.161 Sum_probs=20.0
Q ss_pred ccccCCCeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 167 EGLQKISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 167 ~~~~~~~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
.+++.+...+.+.+|..|+||||+...|+..+
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34444433344445999999999998887654
No 424
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.12 E-value=1.3 Score=40.10 Aligned_cols=35 Identities=20% Similarity=0.087 Sum_probs=27.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.+.+.++ |..|+||||++..+|..+ +....-+++.
T Consensus 54 ~~~vll~-Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 88 (297)
T 3b9p_A 54 AKGLLLF-GPPGNGKTLLARAVATEC---SATFLNISAA 88 (297)
T ss_dssp CSEEEEE-SSSSSCHHHHHHHHHHHT---TCEEEEEEST
T ss_pred CCeEEEE-CcCCCCHHHHHHHHHHHh---CCCeEEeeHH
Confidence 4567776 999999999999988765 5666667663
No 425
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=82.97 E-value=0.85 Score=40.90 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=30.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
|.|++.||++-+|.|+. +|..|++.|.+|+++|.|.
T Consensus 1 MnK~vlVTGas~GIG~a-----ia~~la~~Ga~V~~~~~~~ 36 (247)
T 3ged_A 1 MNRGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEecCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 45799999999999985 6788999999999999774
No 426
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=82.95 E-value=1.3 Score=47.02 Aligned_cols=68 Identities=13% Similarity=0.040 Sum_probs=45.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCcchHHHHHHHHHHHHcCCCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvV~N~v~~~ 347 (370)
..+.+.|||||.-..........+..+|.+++|+........+....+..+.+.+++++ +|+|+++..
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~i-lviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPV-VVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEE-EEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeE-EEEECCCcc
Confidence 46789999999643322223333556799999998776543444555666666788765 899999853
No 427
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=82.91 E-value=0.94 Score=38.28 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLA 199 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA 199 (370)
.++++ |..|+||||+...|+..+.
T Consensus 2 ~i~l~-G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIIT-GEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHG
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 46666 9999999999999998883
No 428
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=82.84 E-value=1.1 Score=38.40 Aligned_cols=27 Identities=33% Similarity=0.294 Sum_probs=22.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGM 201 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~ 201 (370)
+.+.++ |..|+||||++..++..+...
T Consensus 46 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFS-GTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEE-CSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHhcCC
Confidence 356666 999999999999999888643
No 429
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=82.65 E-value=0.96 Score=40.18 Aligned_cols=33 Identities=39% Similarity=0.530 Sum_probs=24.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+|+++ |-.|+||||++..||..+ | ...+|.|.
T Consensus 10 ~~i~i~-G~~GsGKsTla~~la~~l---g--~~~~d~g~ 42 (233)
T 3r20_A 10 LVVAVD-GPAGTGKSSVSRGLARAL---G--ARYLDTGA 42 (233)
T ss_dssp CEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHHH
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHHh---C--CCcccCCc
Confidence 467776 899999999999998877 3 34566553
No 430
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=82.61 E-value=0.61 Score=45.88 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=32.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCC-cEEEeeCCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGA-RVGIFDADVYG 214 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~-rVllID~D~~~ 214 (370)
+.++++. |..|+||||+...|+..+...+. +++.+|.|+++
T Consensus 138 Ge~v~Iv-GpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~ 179 (460)
T 2npi_A 138 GPRVVIV-GGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQ 179 (460)
T ss_dssp CCCEEEE-ESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHhCcccccCCceeEEEcCCccC
Confidence 4588888 88999999999999988765544 66778888754
No 431
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.49 E-value=0.82 Score=41.06 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=26.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+++|+++ |..|+||||++..||..+ |. -++|.|.
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~l---g~--~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSL---GY--TFFDCDT 81 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHH---TC--EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CC--cEEeCcH
Confidence 3577777 999999999999999877 33 4566653
No 432
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=82.21 E-value=1.4 Score=41.06 Aligned_cols=39 Identities=10% Similarity=-0.071 Sum_probs=29.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC-------CCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGM-------GARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~-------G~rVllID~D~ 212 (370)
+..+.++ |.+|+|||+++..++..|.+. +.+++-|+|-.
T Consensus 45 ~~~lli~-GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 45 NKLFYIT-NADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp CCEEEEE-CCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 3455554 999999999999999999753 24567777644
No 433
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=82.13 E-value=1.8 Score=41.67 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=29.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllI 208 (370)
..++|+|++. -||||++.-|+..|...|++|.++
T Consensus 48 ~~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~~g~~ 81 (422)
T 1w78_A 48 APFVFTVAGT---NGKGTTCRTLESILMAAGYKVGVY 81 (422)
T ss_dssp SSEEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEeCC---cChHHHHHHHHHHHHHCCCCEEEE
Confidence 3479999944 589999999999999999999864
No 434
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.06 E-value=1.4 Score=41.41 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=28.4
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
..+.|.++ |..|+|||++|..+|..+ +..++.+++.
T Consensus 116 ~~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~i~~~ 151 (357)
T 3d8b_A 116 PPKGILLF-GPPGTGKTLIGKCIASQS---GATFFSISAS 151 (357)
T ss_dssp CCSEEEEE-SSTTSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHc---CCeEEEEehH
Confidence 34567777 999999999999998754 7788888774
No 435
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=81.86 E-value=1.6 Score=35.81 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|..-....+.......+|.+++|..... .++..+. ..++.+.+. +.+++ +|.|+++..
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 125 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV-LVGTKLDLR 125 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE-EEEECHHHH
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEechhhh
Confidence 34667899998633222222222345799999988654 4566665 456666553 56655 899999863
No 436
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=81.67 E-value=1.2 Score=39.12 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=26.3
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.+|+++ |..|+||||++..||..| | ...+|+|.
T Consensus 16 ~~~i~i~-G~~gsGKst~~~~l~~~l---g--~~~~d~d~ 49 (236)
T 1q3t_A 16 TIQIAID-GPASSGKSTVAKIIAKDF---G--FTYLDTGA 49 (236)
T ss_dssp CCEEEEE-CSSCSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc---C--CceecCCC
Confidence 4578887 889999999999988766 4 35677764
No 437
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.67 E-value=1.4 Score=39.51 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=26.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+-+.++ |..|+|||+++..+|..+ +.++..+++.
T Consensus 52 ~~~ll~-G~~GtGKT~la~~la~~~---~~~~~~v~~~ 85 (285)
T 3h4m_A 52 KGILLY-GPPGTGKTLLAKAVATET---NATFIRVVGS 85 (285)
T ss_dssp SEEEEE-SSSSSSHHHHHHHHHHHT---TCEEEEEEGG
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEEehH
Confidence 356666 999999999999887764 6677777653
No 438
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=81.45 E-value=0.98 Score=45.32 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=27.7
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHH---Hh-CCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL---AG-MGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~L---A~-~G~rVllID~D~ 212 (370)
..++|+|+ |-||+||||+|..++... .. -...|.-++++.
T Consensus 146 ~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 146 EPGWVTIH-GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp SCEEEEEE-CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCceEEEE-cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 35677776 999999999999987643 22 223477777653
No 439
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=81.43 E-value=1.1 Score=38.84 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+|.+. |.+|+||+|.|..||..+
T Consensus 2 ~Iil~-GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFL-GPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHH
Confidence 45555 899999999999999876
No 440
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Probab=81.42 E-value=4.6 Score=35.93 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVY 213 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~ 213 (370)
.|++.||++-||.|+. +|..|+++|.+|.++|-+..
T Consensus 8 ~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~ 43 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRA-----IAERFVDEGSKVIDLSIHDP 43 (264)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEecCcc
Confidence 3689999999998875 67788889999999987643
No 441
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=81.41 E-value=2.1 Score=35.65 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHHHHHHHHHcC---CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVAKGVRMFSKL---KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~~~~~~l~~~---~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+......+....+..+|.+++|..... .++..+...+..+... +.+ +-+|.|+++..
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 143 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSDLS 143 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGGGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCCcc
Confidence 34678999998633221222222445798998887654 3455566666666543 344 45899999863
No 442
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.30 E-value=1.8 Score=36.22 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=40.5
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHH-HHHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDV-AKGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|+.-....+....+..+|.+++|..... .++..+ ...+..+.+. +.++ -+|.|+++..
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl~ 140 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-VLVGLKVDLR 140 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEE-EEEEECGGGC
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhhc
Confidence 34678999998632211122222345799998887654 445554 4455555543 4454 4899999964
No 443
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=81.15 E-value=1.3 Score=43.47 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=25.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-------CCCcEEEeeCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDAD 211 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~-------~G~rVllID~D 211 (370)
-+.++ |.+|+|||+++..+|..+.. .|.+++-+|+.
T Consensus 203 ~~LL~-G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 245 (468)
T 3pxg_A 203 NPVLI-GEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (468)
T ss_dssp EEEEE-SCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred CeEEE-CCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC
Confidence 44455 99999999999999999875 35555555554
No 444
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=81.09 E-value=0.76 Score=38.78 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=20.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLA 199 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA 199 (370)
++++++ |..|+||||+...|+..+.
T Consensus 2 ~ii~l~-GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVIS-GPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEE-SSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 356666 9999999999999988765
No 445
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=80.89 E-value=0.73 Score=42.50 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=30.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.|.++ |..|+|||++|..++....+.+...+.++|..
T Consensus 27 ~vLi~-Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 27 TVLIH-GDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp CEEEE-SCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred cEEEE-CCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 35555 99999999999999988777788888898864
No 446
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.79 E-value=1.3 Score=40.45 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
+.|.++ |..|+||||++..+|..+ +...+.+++
T Consensus 50 ~~vLL~-Gp~GtGKT~la~ala~~~---~~~~i~v~~ 82 (301)
T 3cf0_A 50 KGVLFY-GPPGCGKTLLAKAIANEC---QANFISIKG 82 (301)
T ss_dssp SEEEEE-CSSSSSHHHHHHHHHHHT---TCEEEEECH
T ss_pred ceEEEE-CCCCcCHHHHHHHHHHHh---CCCEEEEEh
Confidence 467777 999999999999998765 456666654
No 447
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=80.73 E-value=1 Score=39.41 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=27.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.+.+|+|. |..|+||||++..|+.. +.+|.+..-+
T Consensus 19 ~g~~i~i~-G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 19 QPFTVLIE-GNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp CCEEEEEE-CSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 35688888 99999999998888765 5678777654
No 448
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=80.71 E-value=5.6 Score=33.36 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=41.2
Q ss_pred CCcEEEEcCCCCCChHH-HHHhhHhCCCeEEEEecCC-cchHHHHHHHHHHHHc----CCCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQ-LTLCQVVPLTAAVIVTTPQ-KLAFIDVAKGVRMFSK----LKVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~-l~~~~~~~~d~viiV~~p~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|++....... +.......+|.+++|...+ ..++..+...+..+.+ .+.+++ +|.|+++..
T Consensus 71 ~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~ 143 (195)
T 3cbq_A 71 EVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI-LVGNKSDLA 143 (195)
T ss_dssp EEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEE-EEEECTTCT
T ss_pred EEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE-EEeechhcc
Confidence 46688999985332211 2222233468888887765 3456666666666654 256655 899999864
No 449
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=80.63 E-value=1.6 Score=44.49 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=27.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEee
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIFD 209 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllID 209 (370)
+.+..|-+|+||||+.+.++..+.+ .+.+|+++-
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a 231 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA 231 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4455588999999999999998887 678888753
No 450
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.55 E-value=0.92 Score=39.95 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLA 199 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA 199 (370)
+.|+|. |-.|+||||++..|+..|.
T Consensus 3 ~~i~~~-G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIE-GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEE-ECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEE-cCCCCCHHHHHHHHHHHcC
Confidence 467776 8899999999999998874
No 451
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=80.46 E-value=1.7 Score=41.93 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=29.1
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEe
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllI 208 (370)
.++|+|++. -||||++.-|+..|...|++|.++
T Consensus 39 ~~vI~VtGT---nGKtTT~~~l~~iL~~~G~~vg~~ 71 (428)
T 1jbw_A 39 GRYIHVTGT---NGKGSAANAIAHVLEASGLTVGLY 71 (428)
T ss_dssp SCEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECC---CChHHHHHHHHHHHHHCCCCEEEE
Confidence 469999944 589999999999999999999976
No 452
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.38 E-value=1.1 Score=38.85 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=22.9
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
++.|+|+ |..|+||||+|..|+ ++|. -+|..|
T Consensus 34 g~~ilI~-GpsGsGKStLA~~La----~~g~--~iIsdD 65 (205)
T 2qmh_A 34 GLGVLIT-GDSGVGKSETALELV----QRGH--RLIADD 65 (205)
T ss_dssp TEEEEEE-CCCTTTTHHHHHHHH----TTTC--EEEESS
T ss_pred CEEEEEE-CCCCCCHHHHHHHHH----HhCC--eEEecc
Confidence 4567777 899999999987765 4555 445555
No 453
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=80.32 E-value=1.8 Score=39.92 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=26.5
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
.+-|.++ |..|+|||++|..+|..+ +..++.+++
T Consensus 51 ~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 51 TSGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCEEEEE-CSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCeEEEE-CCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 3456666 899999999999998765 567777765
No 454
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=80.31 E-value=1.7 Score=40.33 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=27.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEE
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVl 206 (370)
.++|+|| |--||||++.-++..|...|+++.
T Consensus 108 ~~~IaVT---GTnGKTTTt~ll~~iL~~~g~~~~ 138 (326)
T 3eag_A 108 HWVLGVA---GTHGKTTTASMLAWVLEYAGLAPG 138 (326)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CCEEEEE---CCCCHHHHHHHHHHHHHHcCCCce
Confidence 4799999 456899999999999999999874
No 455
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=80.04 E-value=1.4 Score=41.43 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=27.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+.|.++ |-.|+|||++|..+|..+ |.+.+.+++-
T Consensus 52 ~~vll~-GppGtGKT~la~~ia~~~---~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLI-GPTGSGKTLLAETLARLL---DVPFTMADAT 85 (363)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred CeEEEE-CCCCCCHHHHHHHHHHHc---CCCEEEechH
Confidence 456666 889999999999999877 6777777764
No 456
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=80.03 E-value=1.6 Score=37.05 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 279 GELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 279 ~~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
..+.+.|+|+|..-....+....+..+|.+++|..... .++..+. ..+..+.+. +.+++ +|.|+++..
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 126 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-LVGTKLDLR 126 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE-EEEECHHHH
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEeCHHhh
Confidence 34678999998642211222222445799999887654 4566654 566666553 66655 999999853
No 457
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.98 E-value=1.7 Score=41.96 Aligned_cols=35 Identities=37% Similarity=0.431 Sum_probs=29.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
++|. |..|+|||++...+...+...|.+|+++|-.
T Consensus 56 ~~i~-G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 56 LLVN-GATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp EEEE-ECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4444 7789999999888888888889999999863
No 458
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=79.66 E-value=0.73 Score=44.56 Aligned_cols=33 Identities=24% Similarity=0.125 Sum_probs=23.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.+..|-.|+||||++..|+..+ ....||.|.
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 291 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDT 291 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccch
Confidence 444555999999999999887644 345666665
No 459
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=79.54 E-value=1.2 Score=38.20 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLA 199 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA 199 (370)
+.++++ |..|+||||+...|+..+.
T Consensus 5 ~~i~lv-GpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLS-GPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEE-CCCCCCHHHHHHHHHhhCc
Confidence 467777 8999999999999987663
No 460
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=79.33 E-value=1.8 Score=36.76 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=20.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCc
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGAR 204 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~r 204 (370)
++-++|+ +..|+||||+|..|.. +|++
T Consensus 16 G~gvli~-G~SGaGKStlal~L~~----rG~~ 42 (181)
T 3tqf_A 16 KMGVLIT-GEANIGKSELSLALID----RGHQ 42 (181)
T ss_dssp TEEEEEE-ESSSSSHHHHHHHHHH----TTCE
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHH----cCCe
Confidence 4567777 8899999999887654 6765
No 461
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=79.24 E-value=4 Score=36.69 Aligned_cols=67 Identities=19% Similarity=0.143 Sum_probs=38.6
Q ss_pred CCcEEEEcCCCCCC-------h-----H-HHHHhhHhCCCeEE-EEecCCc-chHHHHHHHHHHHHcCCCCeEEEEEcCC
Q 017486 280 ELDYLVIDMPPGTG-------D-----I-QLTLCQVVPLTAAV-IVTTPQK-LAFIDVAKGVRMFSKLKVPCIAVVENMC 344 (370)
Q Consensus 280 ~yD~VIIDtpp~~~-------~-----~-~l~~~~~~~~d~vi-iV~~p~~-~s~~~~~~~~~~l~~~~~~~~gvV~N~v 344 (370)
.+++.|+|||+-.. . . .+....+..++.++ +|+.... ....+..++++.+...+.+++ +|+|++
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i-~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTI-GVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEE-EEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEE-EEEEcc
Confidence 47999999996321 1 1 11111222456565 4555433 333344456677766677765 899999
Q ss_pred ccC
Q 017486 345 HFD 347 (370)
Q Consensus 345 ~~~ 347 (370)
+..
T Consensus 203 Dl~ 205 (299)
T 2aka_B 203 DLM 205 (299)
T ss_dssp GGS
T ss_pred ccC
Confidence 864
No 462
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=79.19 E-value=1.4 Score=38.97 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=29.3
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
|.|++.||++-+|.|+. +|..|+++|.+|.++|-+.
T Consensus 1 m~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~ 36 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence 45789999988888864 6788889999999998654
No 463
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.02 E-value=2.3 Score=41.18 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=30.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
...+|+|+ |..|+||||+...|+..+.....+|..++-+.
T Consensus 166 ~ggii~I~-GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i 205 (418)
T 1p9r_A 166 PHGIILVT-GPTGSGKSTTLYAGLQELNSSERNILTVEDPI 205 (418)
T ss_dssp SSEEEEEE-CSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC
T ss_pred cCCeEEEE-CCCCCCHHHHHHHHHhhcCCCCCEEEEecccc
Confidence 34577777 99999999999999888865556787776443
No 464
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=78.97 E-value=2.7 Score=40.73 Aligned_cols=34 Identities=32% Similarity=0.516 Sum_probs=29.5
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllI 208 (370)
..++|.|++ --||||++.-|+..|...|+||.++
T Consensus 51 ~~~vI~VtG---TNGKgSt~~~l~~iL~~~G~~vg~~ 84 (437)
T 3nrs_A 51 APKIFTVAG---TNGKGTTCCTLEAILLAAGLRVGVY 84 (437)
T ss_dssp SSEEEEEEC---SSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEEEC---CcChHHHHHHHHHHHHHCCCcEEEE
Confidence 457999994 4689999999999999999999875
No 465
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=78.91 E-value=2.1 Score=41.33 Aligned_cols=33 Identities=24% Similarity=0.511 Sum_probs=25.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
++|+| +|-.|+||||++..||..+. .-+|.+|-
T Consensus 3 ~~i~i-~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 3 KVIVI-AGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp EEEEE-EECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred cEEEE-ECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 35555 48889999999999998873 34688775
No 466
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.32 E-value=2.6 Score=43.92 Aligned_cols=39 Identities=26% Similarity=0.222 Sum_probs=33.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+.++ |-.|+|||++|..+|..+...+...+.||+....
T Consensus 523 ~~Ll~-Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFL-GPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEE-SCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 56666 8999999999999999998888899999986543
No 467
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=77.97 E-value=2.1 Score=45.03 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.4
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHh-CCCcEEEe
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAG-MGARVGIF 208 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~-~G~rVllI 208 (370)
+.+..|-+|+||||+...++..+.+ .+.+|+++
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4455699999999999999998886 67888875
No 468
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.96 E-value=1.7 Score=39.77 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=26.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+.++ |..|+|||++|..++..+ +.++..+++..
T Consensus 40 ~vll~-G~~GtGKT~la~~i~~~~---~~~~~~~~~~~ 73 (324)
T 1hqc_A 40 HLLLF-GPPGLGKTTLAHVIAHEL---GVNLRVTSGPA 73 (324)
T ss_dssp CCEEE-CCTTCCCHHHHHHHHHHH---TCCEEEECTTT
T ss_pred cEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeccc
Confidence 45555 999999999999998876 56777777654
No 469
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=77.79 E-value=2.7 Score=41.46 Aligned_cols=33 Identities=27% Similarity=0.292 Sum_probs=28.7
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEe
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllI 208 (370)
.++|+|| |--||||++.-|+..|...|++|.++
T Consensus 108 ~~vI~VT---GTnGKTTT~~ml~~iL~~~g~~~~~~ 140 (498)
T 1e8c_A 108 LRLVGVT---GTNGKTTTTQLLAQWSQLLGEISAVM 140 (498)
T ss_dssp SEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEe---CCcChHHHHHHHHHHHHhCCCCEEEE
Confidence 4699999 44689999999999999999998765
No 470
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=77.79 E-value=1.6 Score=38.98 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=21.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcE
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARV 205 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rV 205 (370)
++|+++ |+.|+||||++..|+.. .|.++
T Consensus 2 ~~i~lt-G~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 2 KLIFLS-GVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEEE-CCTTSSHHHHHHHHHHH---SCEEE
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHh---cCCeE
Confidence 588888 78999999998877553 46554
No 471
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=77.71 E-value=1.4 Score=38.30 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=29.3
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.+++.|+++.||.|+ .+|..|+++|.+|.+++-+.
T Consensus 4 ~~k~vlVtGasggiG~-----~~a~~l~~~G~~V~~~~r~~ 39 (234)
T 2ehd_A 4 MKGAVLITGASRGIGE-----ATARLLHAKGYRVGLMARDE 39 (234)
T ss_dssp CCCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 5678999988888886 56777888999999998653
No 472
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=77.40 E-value=3.1 Score=41.36 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=39.7
Q ss_pred CeEEEEEeCC-CCChHHHHHHHHHHHHHhCCCcEEEeeCCCCCCC
Q 017486 173 SNIVAVSSCK-GGVGKSTVAVNLAYTLAGMGARVGIFDADVYGPS 216 (370)
Q Consensus 173 ~kvI~v~S~k-GGvGKTTla~nLA~~LA~~G~rVllID~D~~~~s 216 (370)
+|-|.||++- .|.||-.+|+.|+..|..+|+||.++=.||+-+-
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpylnv 47 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPYINV 47 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECSSSS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcceee
Confidence 5788898866 8999999999999999999999999999998643
No 473
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=77.27 E-value=1.9 Score=37.90 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=25.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.+|+|+ +-.|+||||++..||..| |.+ ++|.|.
T Consensus 15 ~iI~i~-g~~gsGk~~i~~~la~~l---g~~--~~d~~~ 47 (223)
T 3hdt_A 15 LIITIE-REYGSGGRIVGKKLAEEL---GIH--FYDDDI 47 (223)
T ss_dssp EEEEEE-ECTTSCHHHHHHHHHHHH---TCE--EECHHH
T ss_pred eEEEEe-CCCCCCHHHHHHHHHHHc---CCc--EEcHHH
Confidence 466666 889999999999999887 544 477765
No 474
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=77.19 E-value=2.2 Score=39.16 Aligned_cols=35 Identities=20% Similarity=0.014 Sum_probs=26.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.+.|+ |..|+||||++..++..+ +.+++.+++..
T Consensus 31 ~~v~i~-G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVL-GLRRTGKSSIIKIGINEL---NLPYIYLDLRK 65 (357)
T ss_dssp SEEEEE-ESTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CcEEEE-CCCCCCHHHHHHHHHHhc---CCCEEEEEchh
Confidence 355555 999999999999988765 34688888764
No 475
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.16 E-value=1.4 Score=38.50 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHH
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~L 198 (370)
-|.++ |.+|+||||+|..||..+
T Consensus 60 ~ili~-GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFC-GPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEE-SCGGGCHHHHHHHHHHHH
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHh
Confidence 45555 999999999999999987
No 476
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=77.09 E-value=2.1 Score=40.31 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=26.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeC
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDA 210 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~ 210 (370)
+-|.++ |..|+|||++|..+|..+ +..++.+++
T Consensus 85 ~~iLL~-GppGtGKT~la~ala~~~---~~~~~~v~~ 117 (355)
T 2qp9_X 85 SGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS 117 (355)
T ss_dssp CCEEEE-CSTTSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred ceEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEeeH
Confidence 356666 899999999999999877 566777765
No 477
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=76.73 E-value=1.9 Score=39.61 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=26.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+.+.++..|+|||+++..+|..+ +.+++-+++.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~ 82 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV---NADMMFVNGS 82 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETT
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccc
Confidence 34555989999999999998766 6778877754
No 478
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=76.61 E-value=1.9 Score=38.58 Aligned_cols=36 Identities=17% Similarity=0.424 Sum_probs=30.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
+.|++.||++-+|.|+ .+|..|++.|.+|+++|-+.
T Consensus 15 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~ 50 (266)
T 3p19_A 15 MKKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARRV 50 (266)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence 4579999999998887 56788899999999998653
No 479
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=76.53 E-value=1.8 Score=47.03 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=29.9
Q ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHh----CCCcEEEeeCCC
Q 017486 171 KISNIVAVSSCKGGVGKSTVAVNLAYTLAG----MGARVGIFDADV 212 (370)
Q Consensus 171 ~~~kvI~v~S~kGGvGKTTla~nLA~~LA~----~G~rVllID~D~ 212 (370)
+..++|+|+ |-||+||||+|..++..... ....|..+++..
T Consensus 145 ~~~~~v~i~-G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~ 189 (1249)
T 3sfz_A 145 GEPGWVTIY-GMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK 189 (1249)
T ss_dssp TSCEEEEEE-CSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS
T ss_pred CCCCEEEEE-eCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECC
Confidence 345788888 99999999999988876432 234577777654
No 480
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=76.43 E-value=2.2 Score=35.28 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
+.++++. |..|+||||+...|+..+
T Consensus 33 Ge~v~L~-G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLN-GDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence 3578888 889999999999999987
No 481
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=76.41 E-value=1.9 Score=45.66 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=29.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-------CCCcEEEeeCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAG-------MGARVGIFDAD 211 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~-------~G~rVllID~D 211 (370)
-+.++ |..|+||||++..+|..+.. .|.+++.+|+.
T Consensus 193 ~vlL~-G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~ 235 (854)
T 1qvr_A 193 NPVLI-GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235 (854)
T ss_dssp CCEEE-ECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred ceEEE-cCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehH
Confidence 34555 89999999999999999976 47888888874
No 482
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=76.37 E-value=3.1 Score=41.50 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=29.2
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEe
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllI 208 (370)
..++|+|| |--||||++.-|+..|...|++|.++
T Consensus 145 ~~~vI~VT---GTnGKTTT~~ml~~iL~~~G~~~g~~ 178 (535)
T 2wtz_A 145 RLTVIGIT---GTSGKTTTTYLVEAGLRAAGRVAGLI 178 (535)
T ss_dssp SSEEEEEE---SSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cceEEEee---CCCChHHHHHHHHHHHHHCCCCEEEE
Confidence 35799999 44689999999999999999998874
No 483
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=76.35 E-value=2.4 Score=41.23 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=29.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEe
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllI 208 (370)
.++|+|++. -||||++.-|+..|...|++|.++
T Consensus 52 ~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~vg~~ 84 (442)
T 1o5z_A 52 YKTIHIGGT---NGKGSVANMVSNILVSQGYRVGSY 84 (442)
T ss_dssp SEEEEEECS---SSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCEEEEECC---cCHHHHHHHHHHHHHHCCCCEEEE
Confidence 469999944 589999999999999999999976
No 484
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=76.28 E-value=2.2 Score=46.27 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=29.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHH--HH-hCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYT--LA-GMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~--LA-~~G~rVllID~D~ 212 (370)
.++|+|+ |-||+||||+|..++.. .. .-...++.++.+.
T Consensus 150 ~RVV~Iv-GmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 150 AKNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp SCEEEEC-CSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CeEEEEE-cCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 4688877 99999999999998853 22 2345688888754
No 485
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=76.26 E-value=3 Score=34.94 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCCCChHHHHHhhHhCCCeEEEEecCCc-chHHHHH-HHHHHHHcC--CCCeEEEEEcCCccC
Q 017486 280 ELDYLVIDMPPGTGDIQLTLCQVVPLTAAVIVTTPQK-LAFIDVA-KGVRMFSKL--KVPCIAVVENMCHFD 347 (370)
Q Consensus 280 ~yD~VIIDtpp~~~~~~l~~~~~~~~d~viiV~~p~~-~s~~~~~-~~~~~l~~~--~~~~~gvV~N~v~~~ 347 (370)
.+.+.|+|+|.......+.......+|.+++|..... .++..+. ..++.+.+. +.+++ +|.|+++..
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-lv~nK~Dl~ 137 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII-LVGTQSDLR 137 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEE-EEEECGGGG
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE-EEEECHhhh
Confidence 3567899998532211111222345799999887654 4555654 455555543 56654 899999864
No 486
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=76.07 E-value=1.8 Score=40.27 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=20.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
..++++ |..|+||||++..+|..+
T Consensus 52 ~~~ll~-Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLA-GPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEE-SSTTSSHHHHHHHHHHHH
T ss_pred CeEEEE-CCCCCcHHHHHHHHHHHh
Confidence 356666 999999999999999887
No 487
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=75.88 E-value=2.3 Score=39.33 Aligned_cols=30 Identities=30% Similarity=0.208 Sum_probs=25.0
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEE
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVG 206 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVl 206 (370)
+.+++|+ |..|+||||+...|+..+ .| +|+
T Consensus 126 Ge~vaIv-GpsGsGKSTLl~lL~gl~--~G-~I~ 155 (305)
T 2v9p_A 126 KNCLAFI-GPPNTGKSMLCNSLIHFL--GG-SVL 155 (305)
T ss_dssp CSEEEEE-CSSSSSHHHHHHHHHHHH--TC-EEE
T ss_pred CCEEEEE-CCCCCcHHHHHHHHhhhc--Cc-eEE
Confidence 4588888 889999999999999988 45 553
No 488
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=75.70 E-value=1.8 Score=37.08 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=21.8
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLA 199 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA 199 (370)
+.++++. |..|+||||+...|+..+.
T Consensus 20 Gei~~l~-GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLS-GPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 3578887 9999999999999988763
No 489
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.62 E-value=1.4 Score=41.06 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=25.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 176 VAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 176 I~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
+.|+ |..|+||||++..+|..+...+.++.+++.+
T Consensus 49 ~ll~-Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~ 83 (340)
T 1sxj_C 49 LLFY-GPPGTGKTSTIVALAREIYGKNYSNMVLELN 83 (340)
T ss_dssp EEEE-CSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHcCCCccceEEEEc
Confidence 5555 9999999999999999987554444444444
No 490
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=75.62 E-value=1.7 Score=37.75 Aligned_cols=35 Identities=14% Similarity=0.273 Sum_probs=27.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
||++.||++-+|.|+ .+|..|+++|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDAEGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 468999988888886 46677889999999998764
No 491
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=75.51 E-value=0.72 Score=41.31 Aligned_cols=26 Identities=19% Similarity=0.075 Sum_probs=21.6
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHH
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTL 198 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~L 198 (370)
.++.|+|. |-.|+||||++..|+..|
T Consensus 23 ~~~~I~ie-G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIE-GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEE-CSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 34577777 999999999999988776
No 492
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=75.49 E-value=3.2 Score=40.38 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=26.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEE
Q 017486 174 NIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGI 207 (370)
Q Consensus 174 kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVll 207 (370)
++|+||+. -||||++.-++..|...|+++.+
T Consensus 113 ~~IaVTGT---nGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 113 QLIGITGS---NGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp EEEEEECS---SCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEECC---CCHHHHHHHHHHHHHhcCCCEEE
Confidence 79999944 46999999999999999988754
No 493
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=75.43 E-value=3.4 Score=40.68 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=28.6
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEe
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIF 208 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllI 208 (370)
.++|.|++. -||||++.-|+..|...|+||.++
T Consensus 64 ~~vI~VtGT---NGKtST~~~l~~iL~~~G~~vG~~ 96 (487)
T 2vos_A 64 YPSIHIAGT---NGKTSVARMVDALVTALHRRTGRT 96 (487)
T ss_dssp SCEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEeCC---CCcHHHHHHHHHHHHHcCCCeEEE
Confidence 469999944 489999999999999999999765
No 494
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=75.38 E-value=2.6 Score=44.61 Aligned_cols=39 Identities=28% Similarity=0.209 Sum_probs=33.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCCCC
Q 017486 175 IVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADVYG 214 (370)
Q Consensus 175 vI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~~~ 214 (370)
.+.|+ |..|+|||++|..||..+...+...+.||+....
T Consensus 590 ~vLl~-Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 590 SFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp EEEEB-SCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 56666 9999999999999999998888899999987543
No 495
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.14 E-value=3.4 Score=40.07 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=28.8
Q ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 172 ISNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 172 ~~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.++-|.++ |-+|+|||++|..+|..+ |...+.|++.
T Consensus 205 ~prGiLL~-GPPGtGKT~lakAiA~~~---~~~~~~v~~~ 240 (428)
T 4b4t_K 205 PPRGVLLY-GPPGTGKTMLVKAVANST---KAAFIRVNGS 240 (428)
T ss_dssp CCCEEEEE-SCTTTTHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCceEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEEecc
Confidence 34567777 999999999999998876 6677777764
No 496
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.12 E-value=1.3 Score=38.55 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=15.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHH-HHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLA-YTL 198 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA-~~L 198 (370)
+++|+++ |-.|+||||++..|+ ..+
T Consensus 27 G~ii~l~-Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLS-SPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEE-CSCC----CHHHHHHC---
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhcCC
Confidence 4588888 889999999999888 654
No 497
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=75.10 E-value=2.8 Score=40.75 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=27.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
.+-|.++ |..|+|||++|..+|..+ .+..++.+++.
T Consensus 167 ~~~vLL~-GppGtGKT~lA~aia~~~--~~~~~~~v~~~ 202 (444)
T 2zan_A 167 WRGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISSS 202 (444)
T ss_dssp CSEEEEE-CSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence 3567777 999999999999998876 35566666653
No 498
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=75.07 E-value=2.1 Score=37.43 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=29.2
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDADV 212 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D~ 212 (370)
.|++.||++.||.|+ .+|..|+++|.+|.+++-+.
T Consensus 2 ~k~vlVTGas~giG~-----~~a~~l~~~G~~V~~~~r~~ 36 (239)
T 2ekp_A 2 ERKALVTGGSRGIGR-----AIAEALVARGYRVAIASRNP 36 (239)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence 468999999888887 46778888999999998764
No 499
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=74.76 E-value=1.8 Score=36.01 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=16.9
Q ss_pred CeEEEEEeCCCCChHHHHHHH
Q 017486 173 SNIVAVSSCKGGVGKSTVAVN 193 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~n 193 (370)
+.++++. |..|+||||++..
T Consensus 9 gei~~l~-G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLI-GSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEE-CCTTSCHHHHHHH
T ss_pred CEEEEEE-CCCCCCHHHHHHH
Confidence 3577887 9999999999885
No 500
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=74.68 E-value=1.6 Score=37.93 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=25.4
Q ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCcEEEeeCC
Q 017486 173 SNIVAVSSCKGGVGKSTVAVNLAYTLAGMGARVGIFDAD 211 (370)
Q Consensus 173 ~kvI~v~S~kGGvGKTTla~nLA~~LA~~G~rVllID~D 211 (370)
++++++. |..|+||||+.-.|+..+ . | ++.+ ..+
T Consensus 23 G~~~~lv-GpsGsGKSTLl~~L~g~~-p-G-~i~~-g~~ 56 (218)
T 1z6g_A 23 IYPLVIC-GPSGVGKGTLIKKLLNEF-P-N-YFYF-SVS 56 (218)
T ss_dssp CCCEEEE-CSTTSSHHHHHHHHHHHS-T-T-TEEE-CCC
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC-C-C-cEEE-eec
Confidence 3578887 899999999999998876 3 5 4544 443
Done!