BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017487
(370 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|D Chain D, Human Pyruvate Dehydrogenase S264e Variant
Length = 341
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 201/325 (61%), Positives = 253/325 (77%), Gaps = 1/325 (0%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
Q+ VR+A+N +DEE+ D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 14 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 73
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
F GI VGAA GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G VPIVFRGPNGA+
Sbjct: 74 FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 133
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
AGV AQHS C+AAWY PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG F
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 193
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
E F +PIGKAKIER+G +T+ + S+ VG L+AA +L+KEG+ EVIN+R+I
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 253
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVP 334
RP+D TI ASV KTN LVTVE G+PQ GVGAEICA ++E +F +LDAP R+ GADVP
Sbjct: 254 RPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVP 313
Query: 335 MPYAANLERMAVPQVEDIVRAAKRA 359
MPYA LE ++PQV+DI+ A K+
Sbjct: 314 MPYAKILEDNSIPQVKDIIFAIKKT 338
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|J Chain J, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|L Chain L, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|N Chain N, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|P Chain P, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|R Chain R, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|T Chain T, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|V Chain V, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|X Chain X, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Z Chain Z, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|2 Chain 2, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|4 Chain 4, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|6 Chain 6, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|D Chain D, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|F Chain F, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|H Chain H, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXI|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 329
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 201/325 (61%), Positives = 253/325 (77%), Gaps = 1/325 (0%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
Q+ VR+A+N +DEE+ D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 2 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMG 61
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
F GI VGAA GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G VPIVFRGPNGA+
Sbjct: 62 FAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGAS 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
AGV AQHS C+AAWY PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG F
Sbjct: 122 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFE 181
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
E F +PIGKAKIER+G +T+ + S+ VG L+AA +L+KEG+ EVIN+R+I
Sbjct: 182 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 241
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVP 334
RP+D TI ASV KTN LVTVE G+PQ GVGAEICA ++E +F +LDAP R+ GADVP
Sbjct: 242 RPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVP 301
Query: 335 MPYAANLERMAVPQVEDIVRAAKRA 359
MPYA LE ++PQV+DI+ A K+
Sbjct: 302 MPYAKILEDNSIPQVKDIIFAIKKT 326
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase
pdb|1NI4|D Chain D, Human Pyruvate Dehydrogenase
Length = 341
Score = 386 bits (992), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/325 (60%), Positives = 244/325 (75%), Gaps = 1/325 (0%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
Q+ VR+A+N DEE+ D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E G
Sbjct: 14 QVTVRDAINQGXDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEXG 73
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
F GI VGAA GL+P+ EF TFNFS QAID +INSAAK+ Y S G VPIVFRGPNGA+
Sbjct: 74 FAGIAVGAAXAGLRPICEFXTFNFSXQAIDQVINSAAKTYYXSGGLQPVPIVFRGPNGAS 133
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
AGV AQHS C+AAWY PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL YG F
Sbjct: 134 AGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELXYGVPFE 193
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
E F +PIGKAKIER+G +T+ + S+ VG L+AA +L+KEG+ EVIN R+I
Sbjct: 194 FPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINXRTI 253
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVP 334
RP D TI ASV KTN LVTVE G+PQ GVGAEICA + E +F +LDAP R+ GADVP
Sbjct: 254 RPXDXETIEASVXKTNHLVTVEGGWPQFGVGAEICARIXEGPAFNFLDAPAVRVTGADVP 313
Query: 335 MPYAANLERMAVPQVEDIVRAAKRA 359
PYA LE ++PQV+DI+ A K+
Sbjct: 314 XPYAKILEDNSIPQVKDIIFAIKKT 338
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|D Chain D, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|B Chain B, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|D Chain D, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 324
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 140/325 (43%), Positives = 203/325 (62%), Gaps = 7/325 (2%)
Query: 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGF 96
M + +ALN ALDEEM+ DP+V ++GE+VG+ G + +++GLL+KYGP+RV+DTP++EA
Sbjct: 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 97 TGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA 156
G +G A +GL+PV E ++ D +++ AK Y S GQ + P+V R P+G
Sbjct: 64 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGV 123
Query: 157 GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPV 216
G HS A + GLKV++ + DA+GLLKAAIRD DPVVFLE + LY V
Sbjct: 124 RGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRS---V 180
Query: 217 SAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR 276
EV + + LPIGKA + REGKD+T+ + ++ L+AA LAK G+SAEV++LR++
Sbjct: 181 KEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRTLM 240
Query: 277 PLDRSTINASVRKTNRLVTVEEGFPQHG-VGAEICASVIEESFGYLDAPVERIAGADVPM 335
P D + SV KT R+V V + P+H +E+ A++ E+ L AP R+ G D P
Sbjct: 241 PWDYEAVMNSVAKTGRVVLVSDA-PRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPY 299
Query: 336 PYAANLERMAVPQVEDIVRAAKRAC 360
PYA + ++ +P V I+ AAKRA
Sbjct: 300 PYAQD--KLYLPTVTRILNAAKRAL 322
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|D Chain D, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|F Chain F, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|H Chain H, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 324
Score = 247 bits (630), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 192/323 (59%), Gaps = 4/323 (1%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
QM + +A+ AL E+ DP V + GE+VG G ++ ++GL ++G +RV DTP+ E+G
Sbjct: 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 61
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
G+ +G A G +PV E F F + +D I A+ Y + G+ +PI R P G
Sbjct: 62 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 121
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
HS A PGLKV+ P + DA+GLL +AIRD DPV+FLE+ LY SF
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY-RSF- 179
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
EV + + +PIGKA I+REGKD+TI A+ +V SLKAA L KEGISAEV++LR++
Sbjct: 180 -RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 238
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM 335
+PLD TI SV KT R + V+E Q G+ A + A + E + L+APV R+A D
Sbjct: 239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVY 298
Query: 336 PYAANLERMAVPQVEDIVRAAKR 358
P+ A E + +P +D++ AK+
Sbjct: 299 PF-AQAESVWLPNFKDVIETAKK 320
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|D Chain D, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|F Chain F, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|H Chain H, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 325
Score = 247 bits (630), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 135/323 (41%), Positives = 192/323 (59%), Gaps = 4/323 (1%)
Query: 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAG 95
QM + +A+ AL E+ DP V + GE+VG G ++ ++GL ++G +RV DTP+ E+G
Sbjct: 3 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESG 62
Query: 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA 155
G+ +G A G +PV E F F + +D I A+ Y + G+ +PI R P G
Sbjct: 63 IGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGG 122
Query: 156 AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFP 215
HS A PGLKV+ P + DA+GLL +AIRD DPV+FLE+ LY SF
Sbjct: 123 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY-RSF- 180
Query: 216 VSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275
EV + + +PIGKA I+REGKD+TI A+ +V SLKAA L KEGISAEV++LR++
Sbjct: 181 -RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 239
Query: 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM 335
+PLD TI SV KT R + V+E Q G+ A + A + E + L+APV R+A D
Sbjct: 240 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVY 299
Query: 336 PYAANLERMAVPQVEDIVRAAKR 358
P+ A E + +P +D++ AK+
Sbjct: 300 PF-AQAESVWLPNFKDVIETAKK 321
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate
Dehydrogenase From The Archeon Pyrobaculum Aerophilum
Length = 369
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 188/316 (59%), Gaps = 9/316 (2%)
Query: 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
+A+N AL EEM D +V ++GE+VG+ G + +++GL E++GPERV+DTP+ E G G
Sbjct: 55 KAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFA 114
Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
+G A GLKPV E +F D ++N AK Y S G P+V R P G+ G
Sbjct: 115 MGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGL 174
Query: 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEV 220
HS+ A + PGL V+ P + +A+GLLKAAIR DPVVFLE ++LY EV
Sbjct: 175 YHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILYRAP---REEV 231
Query: 221 LDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR 280
+ + + IGKA++ REG DVT+ + +V +L+AAE + S EV++L+++ PLD
Sbjct: 232 PEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAE---RVKASVEVVDLQTLNPLDF 288
Query: 281 STINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPM-PYAA 339
T+ SV KT RL+ + G+GAE+ A V E++ L APV R+AG DVP P AA
Sbjct: 289 DTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIAA 348
Query: 340 NLERMAVPQVEDIVRA 355
+ P VE I++A
Sbjct: 349 DAAY--APTVERIIKA 362
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|D Chain D, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|F Chain F, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|H Chain H, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 339
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 177/319 (55%), Gaps = 16/319 (5%)
Query: 33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPIT 92
A M + +AL SA+D + D V + G++VG + G ++ ++GL KYG RV D PI+
Sbjct: 2 ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 61
Query: 93 EAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN 152
E+G G VG YGL+PVVE ++ A D I++ A+ Y S+G+ P+ R P
Sbjct: 62 ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC 121
Query: 153 GAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGE 212
G G HS A + V GL+ + P + DA+GLL A+I DPV+FLE + LY
Sbjct: 122 GGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNG 181
Query: 213 SF------PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEI 259
F PV+ + V D + +P+ KA I R G DV++ + V ++ AAE
Sbjct: 182 PFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE- 240
Query: 260 LAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFG 319
+ G+ AEVI+LRS+ PLD TI SV+KT R V V E G GAE+ + V E F
Sbjct: 241 --ESGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFH 298
Query: 320 YLDAPVERIAGADVPMPYA 338
+L+AP+ER+ G D P P+A
Sbjct: 299 HLEAPIERVTGWDTPYPHA 317
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 338
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 122/311 (39%), Positives = 173/311 (55%), Gaps = 16/311 (5%)
Query: 41 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIG 100
+AL SA D + D V + G++VG + G ++ ++GL KYG RV D PI+E+G G
Sbjct: 9 QALRSAXDVXLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTA 68
Query: 101 VGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGA 160
VG YGL+PVVE ++ A D I++ A+ Y S+G+ P+ R P G G
Sbjct: 69 VGXGAYGLRPVVEIQFADYFYPASDQIVSEXARLRYRSAGEFIAPLTLRXPCGGGIYGGQ 128
Query: 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF------ 214
HS A + V GL+ + P + DA+GLL A+I DPV+FLE + LY F
Sbjct: 129 THSQSPEAXFTQVCGLRTVXPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDR 188
Query: 215 PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISA 267
PV+ + V D + +P+ KA I R G DV++ + V ++ AAE + G+ A
Sbjct: 189 PVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAE---ESGVDA 245
Query: 268 EVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVER 327
EVI+LRS+ PLD TI SV+KT R V V E G GAE+ + V E F +L+AP+ER
Sbjct: 246 EVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIER 305
Query: 328 IAGADVPMPYA 338
+ G D P P+A
Sbjct: 306 VTGWDTPYPHA 316
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLU|B Chain B, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V11|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V16|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1M|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1V1R|B Chain B, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
pdb|1U5B|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7W|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7X|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Y|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1X7Z|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1X80|B Chain B, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|B Chain B, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFB|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFC|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFD|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFE|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BFF|B Chain B, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 342
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 172/313 (54%), Gaps = 9/313 (2%)
Query: 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
R Y ++M + +++ SALD ++ DP + GE+V + G ++ + GL +KYG +RV
Sbjct: 13 REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70
Query: 88 DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
+TP+ E G G G+G A G + E ++ A D I+N AAK Y S + +
Sbjct: 71 NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130
Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
R P G HS A++A PG+KV+ P S A+GLL + I D +P +F E
Sbjct: 131 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190
Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
++LY + + EV + +P+ +A++ +EG DVT+ A+ V + + A +AKE G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246
Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAP 324
+S EVI+LR+I P D TI SV KT RL+ E G +EI ++V EE F L+AP
Sbjct: 247 VSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAP 306
Query: 325 VERIAGADVPMPY 337
+ R+ G D P P+
Sbjct: 307 ISRVCGYDTPFPH 319
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|D Chain D, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 350
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 112/313 (35%), Positives = 172/313 (54%), Gaps = 9/313 (2%)
Query: 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
R Y ++M + +++ SALD ++ DP + GE+V + G ++ + GL +KYG +RV
Sbjct: 13 REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70
Query: 88 DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
+TP+ E G G G+G A G + E ++ A D I+N AAK Y S + +
Sbjct: 71 NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130
Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
R P G HS A++A PG+KV+ P S A+GLL + I D +P +F E
Sbjct: 131 TIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190
Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
++LY + + EV + +P+ +A++ +EG DVT+ A+ V + + A +AKE G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246
Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAP 324
+S EVI+LR+I P D TI SV KT RL+ E G +EI ++V EE F L+AP
Sbjct: 247 VSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAP 306
Query: 325 VERIAGADVPMPY 337
+ R+ G D P P+
Sbjct: 307 ISRVCGYDTPFPH 319
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
Length = 342
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 171/313 (54%), Gaps = 9/313 (2%)
Query: 28 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVL 87
R Y ++M + +++ SALD ++ DP + GE+V + G ++ + GL +KYG +RV
Sbjct: 13 REYGQT-QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVF 70
Query: 88 DTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PI 146
+TP+ E G G G+G A G + E ++ A D I+N AAK Y S + +
Sbjct: 71 NTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSL 130
Query: 147 VFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLEN 206
R P G S A++A PG+KV+ P S A+GLL + I D +P +F E
Sbjct: 131 TIRSPWGCVGHGALYASQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEP 190
Query: 207 ELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--G 264
++LY + + EV + +P+ +A++ +EG DVT+ A+ V + + A +AKE G
Sbjct: 191 KILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLG 246
Query: 265 ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAP 324
+S EVI+LR+I P D TI SV KT RL+ E G +EI ++V EE F L+AP
Sbjct: 247 VSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAP 306
Query: 325 VERIAGADVPMPY 337
+ R+ G D P P+
Sbjct: 307 ISRVCGYDTPFPH 319
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 121/276 (43%), Gaps = 30/276 (10%)
Query: 42 ALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGV 101
A A+ E DP+ F++ + E G + S+ P R LD I E
Sbjct: 327 AFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSR-----VHPHRYLDVGIAEEVAVTTAA 381
Query: 102 GAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQ 161
G A G++PVV + F +A D +++ A + ++ I G GA GA
Sbjct: 382 GMALQGMRPVVAIYS-TFLQRAYDQVLHDVAIEHL----NVTFCIDRAGIVGAD---GAT 433
Query: 162 HSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPV--SA 218
H+ + ++ S+PG+++ P + + RG+LK A P + +P +A
Sbjct: 434 HNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYAQTHDGP---------FAIRYPRGNTA 484
Query: 219 EVLDSSF-CLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP 277
+V ++ L G+ + + G DV I A K + +LKAAE L G V+N R ++P
Sbjct: 485 QVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLPGVG----VVNARFVKP 540
Query: 278 LDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313
LD + + L+TVE+ G G + ++
Sbjct: 541 LDEEMLREVGGRARALITVEDNTVVGGFGGAVLEAL 576
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 22/246 (8%)
Query: 77 LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN-FSMQAIDHIINSA-AKS 134
+ +K P+R ++ I E I VG A + V TF F +A D I +A ++S
Sbjct: 346 IFKKEHPDRFIECYIAEQNMVSIAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISES 404
Query: 135 NYMSSG-QISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193
N G V I GP +Q + A + SVP V P ++
Sbjct: 405 NINLCGSHCGVSIGEDGP--------SQMALEDLAMFRSVPTSTVFYPSDGVATEKAVEL 456
Query: 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGL- 252
A + + F+ S P +A + +++ +G+AK+ + KD +T V L
Sbjct: 457 AA-NTKGICFIRT------SRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLH 509
Query: 253 -SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEIC 310
+L AAE+L KE I+ V++ +I+PLDR I S R T R++TVE+ + + G+G +
Sbjct: 510 EALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS 569
Query: 311 ASVIEE 316
++V+ E
Sbjct: 570 SAVVGE 575
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 115/246 (46%), Gaps = 22/246 (8%)
Query: 77 LLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFN-FSMQAIDHIINSA-AKS 134
+ +K P+R ++ I E I VG A + V TF F +A D I +A ++S
Sbjct: 348 IFKKEHPDRFIECYIAEQNMVSIAVGCATRN-RTVPFCSTFAAFFTRAFDQIRMAAISES 406
Query: 135 NYMSSG-QISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193
N G V I GP +Q + A + SVP V P ++
Sbjct: 407 NINLCGSHCGVSIGEDGP--------SQMALEDLAMFRSVPTSTVFYPSDGVATEKAVEL 458
Query: 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGL- 252
A + + F+ S P +A + +++ +G+AK+ + KD +T V L
Sbjct: 459 AA-NTKGICFIRT------SRPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLH 511
Query: 253 -SLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEIC 310
+L AAE+L KE I+ V++ +I+PLDR I S R T R++TVE+ + + G+G +
Sbjct: 512 EALAAAELLKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVS 571
Query: 311 ASVIEE 316
++V+ E
Sbjct: 572 SAVVGE 577
>pdb|2O1S|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
pdb|2O1S|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From
Escherichia Coli
Length = 621
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 27/232 (11%)
Query: 83 PERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI 142
P+R D I E G A G KP+V + F +A D +++ A
Sbjct: 360 PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYS-TFLQRAYDQVLHDVAIQK------- 411
Query: 143 SVPIVFRGPNGAAAGVGAQ-HSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIR---D 197
+P++F G Q H + Y +P + +P + R L
Sbjct: 412 -LPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEXVIXTPSDENECRQXLYTGYHYNDG 470
Query: 198 PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAA 257
P V + + E P+ LPIGK ++R G+ + I F + + K A
Sbjct: 471 PSAVRYPRGNAVGVELTPLEK--------LPIGKGIVKRRGEKLAILNFGTLXPEAAKVA 522
Query: 258 EILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 309
E L +A +++ R ++PLD + I LVTVEE G G+ +
Sbjct: 523 ESL-----NATLVDXRFVKPLDEALILEXAASHEALVTVEENAIXGGAGSGV 569
>pdb|3VSR|A Chain A, Arthrobacter Sp. K-1 Beta-Fructofuranosidase
pdb|3VSS|A Chain A, Arthrobacter Sp. K-1 Beta-Fructofuranosidase Complexed
With Fructose
Length = 496
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 202 VFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILA 261
+F + Y S + + D L +GK K ++G VT+T F+K+ L L+A
Sbjct: 177 LFFTDVAFYRNSDGTNIKPYDPRIALSVGKVKANKKG--VTLTGFNKVTDL-LQADGTYY 233
Query: 262 KEGISAEVINLRS 274
+ G E N R
Sbjct: 234 QTGAQNEFFNFRD 246
>pdb|3JU3|A Chain A, Crystal Structure Of Alpha Chain Of Probable 2-Oxoacid
Ferredoxin Oxidoreductase From Thermoplasma Acidophilum
Length = 118
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLV 294
E+E D+T + G L E L +EGISA ++ L+ P + + N ++
Sbjct: 11 EKEA-DITFVTWGSQKGPILDVIEDLKEEGISANLLYLKXFSPFPTEFVKNVLSSANLVI 69
Query: 295 TVEEGF 300
VE +
Sbjct: 70 DVESNY 75
>pdb|1YD7|A Chain A, Conserved Hypothetical Protein Pfu-1647980-001 From
Pyrococcus Furiosus
Length = 395
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 235 EREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLV 294
E E ++ + A + +L+A + L +EGI A ++ + +I P D I + ++L
Sbjct: 288 ELEDAEIGVVATGIVARSALRAVKXLREEGIKAGLLKIETIWPFDFELIERIAERVDKLY 347
Query: 295 TVEEGFPQ 302
E Q
Sbjct: 348 VPEXNLGQ 355
>pdb|3UPT|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
pdb|3UPT|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Pseudomallei Bound To Tpp, Calcium And
Ribose-5-Phosphate
Length = 711
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR 280
+ + + A V L++KA E LA++GI+A V+++ S DR
Sbjct: 598 RKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDR 639
>pdb|3UK1|A Chain A, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
pdb|3UK1|B Chain B, Crystal Structure Of A Transketolase From Burkholderia
Thailandensis With An Oxidized Cysteinesulfonic Acid In
The Active Site
Length = 711
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR 280
+ + + A V L++KA E LA++GI+A V+++ S DR
Sbjct: 598 RKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPSSDVFDR 639
>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
Length = 272
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 174 PGLKVLSPYSSEDARGLLKAAIRDPD-PVVFLENELLYGESFPV--SAEVLDSSFCLPIG 230
PGL + P D + RDPD VV + E G++F S E++D + G
Sbjct: 32 PGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGE---GKAFSSGGSFELIDETIGDYEG 88
Query: 231 KAKIEREGKDVTIT 244
+ +I RE +D+ +
Sbjct: 89 RIRIMREARDLVLN 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,442,327
Number of Sequences: 62578
Number of extensions: 428807
Number of successful extensions: 1349
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 30
length of query: 370
length of database: 14,973,337
effective HSP length: 100
effective length of query: 270
effective length of database: 8,715,537
effective search space: 2353194990
effective search space used: 2353194990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)