Query 017487
Match_columns 370
No_of_seqs 156 out of 1542
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 15:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ozl_B PDHE1-B, pyruvate dehyd 100.0 1.8E-68 6.2E-73 519.6 29.5 329 33-361 11-340 (341)
2 1w85_B Pyruvate dehydrogenase 100.0 6.8E-68 2.3E-72 512.8 30.8 322 36-361 2-323 (324)
3 1umd_B E1-beta, 2-OXO acid deh 100.0 3.4E-67 1.2E-71 507.9 30.6 322 35-361 2-323 (324)
4 2bfd_B 2-oxoisovalerate dehydr 100.0 1.1E-65 3.8E-70 500.5 29.5 329 25-361 10-341 (342)
5 1ik6_A Pyruvate dehydrogenase; 100.0 1.2E-65 4.2E-70 504.2 27.7 319 35-361 49-368 (369)
6 1qs0_B 2-oxoisovalerate dehydr 100.0 1.3E-63 4.4E-68 485.5 28.6 321 35-361 3-337 (338)
7 3mos_A Transketolase, TK; thia 100.0 7.8E-56 2.7E-60 460.6 30.7 304 26-357 303-615 (616)
8 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 3.1E-55 1.1E-59 458.2 30.1 299 36-362 321-624 (629)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 5.3E-55 1.8E-59 455.9 31.8 299 35-361 317-620 (621)
10 3rim_A Transketolase, TK; TPP, 100.0 1.6E-51 5.6E-56 430.9 21.2 323 7-361 340-699 (700)
11 3m49_A Transketolase; alpha-be 100.0 4E-51 1.4E-55 428.2 22.1 301 27-360 370-690 (690)
12 3l84_A Transketolase; TKT, str 100.0 5.4E-50 1.8E-54 416.4 23.9 285 34-358 335-631 (632)
13 3uk1_A Transketolase; structur 100.0 4.3E-50 1.5E-54 421.2 23.1 294 34-360 392-710 (711)
14 2r8o_A Transketolase 1, TK 1; 100.0 3.3E-50 1.1E-54 422.3 16.9 296 34-362 352-665 (669)
15 3kom_A Transketolase; rossmann 100.0 8.7E-49 3E-53 409.6 22.9 294 34-359 352-662 (663)
16 1gpu_A Transketolase; transfer 100.0 6.5E-49 2.2E-53 412.9 22.0 302 27-364 346-668 (680)
17 1itz_A Transketolase; calvin c 100.0 1.4E-48 4.9E-53 410.0 24.5 299 27-358 356-674 (675)
18 1r9j_A Transketolase; domains, 100.0 5.1E-49 1.7E-53 413.1 18.7 297 27-363 345-658 (673)
19 2e6k_A Transketolase; structur 100.0 6.9E-49 2.4E-53 411.1 18.0 290 34-359 346-650 (651)
20 2jgd_A 2-oxoglutarate dehydrog 100.0 2.2E-45 7.5E-50 393.9 21.9 309 36-357 590-930 (933)
21 2yic_A 2-oxoglutarate decarbox 100.0 7.6E-45 2.6E-49 387.8 18.5 286 42-337 520-848 (868)
22 2xt6_A 2-oxoglutarate decarbox 100.0 5.4E-44 1.8E-48 389.7 19.3 282 46-337 771-1093(1113)
23 2qtc_A Pyruvate dehydrogenase 100.0 6.2E-42 2.1E-46 366.0 23.2 309 34-367 489-863 (886)
24 3ahc_A Phosphoketolase, xylulo 100.0 3E-38 1E-42 332.5 20.2 305 36-361 428-786 (845)
25 1yd7_A 2-keto acid:ferredoxin 100.0 5.6E-29 1.9E-33 246.3 10.4 287 36-360 22-394 (395)
26 2c42_A Pyruvate-ferredoxin oxi 99.9 4.1E-20 1.4E-24 204.3 27.2 257 81-362 51-384 (1231)
27 3ju3_A Probable 2-oxoacid ferr 99.7 5.1E-17 1.7E-21 133.9 10.4 106 237-361 12-117 (118)
28 2nxw_A Phenyl-3-pyruvate decar 94.4 0.83 2.9E-05 46.3 15.6 158 35-211 19-189 (565)
29 2uz1_A Benzaldehyde lyase; thi 94.4 0.46 1.6E-05 48.2 13.5 152 37-208 4-164 (563)
30 1v5e_A Pyruvate oxidase; oxido 94.2 0.098 3.4E-06 53.6 8.2 113 85-209 45-165 (590)
31 2iht_A Carboxyethylarginine sy 93.6 0.34 1.2E-05 49.3 10.7 114 84-209 49-172 (573)
32 1ozh_A ALS, acetolactate synth 93.5 0.23 8E-06 50.5 9.3 153 37-209 11-171 (566)
33 1ybh_A Acetolactate synthase, 93.1 0.28 9.6E-06 50.1 9.2 113 85-208 52-172 (590)
34 2pan_A Glyoxylate carboligase; 92.4 1 3.6E-05 46.1 12.4 151 37-208 27-188 (616)
35 3eya_A Pyruvate dehydrogenase 92.3 0.45 1.5E-05 48.1 9.3 112 85-208 43-162 (549)
36 2wvg_A PDC, pyruvate decarboxy 92.2 2.1 7E-05 43.4 14.2 113 85-209 43-170 (568)
37 1t9b_A Acetolactate synthase, 91.8 0.56 1.9E-05 48.9 9.5 112 85-208 122-242 (677)
38 2vbi_A Pyruvate decarboxylase; 91.4 2.1 7E-05 43.3 13.1 153 37-209 3-170 (566)
39 1q6z_A BFD, BFDC, benzoylforma 91.2 0.29 9.9E-06 49.2 6.5 114 85-209 40-162 (528)
40 2pgn_A Cyclohexane-1,2-dione h 89.8 0.52 1.8E-05 48.1 7.0 111 85-208 45-165 (589)
41 3hww_A 2-succinyl-5-enolpyruvy 89.2 3.4 0.00012 41.6 12.5 112 85-207 48-170 (556)
42 2c31_A Oxalyl-COA decarboxylas 89.0 0.7 2.4E-05 46.9 7.2 153 36-209 9-172 (568)
43 2q28_A Oxalyl-COA decarboxylas 88.9 0.95 3.3E-05 45.8 8.1 153 36-209 7-170 (564)
44 2vk8_A Pyruvate decarboxylase 87.5 2.2 7.6E-05 43.1 9.8 113 85-209 44-171 (563)
45 4feg_A Pyruvate oxidase; carba 87.0 1.8 6E-05 44.3 8.8 154 36-208 10-171 (603)
46 2x7j_A 2-succinyl-5-enolpyruvy 85.4 3.6 0.00012 41.9 10.2 114 84-208 70-198 (604)
47 1ovm_A Indole-3-pyruvate decar 85.2 6 0.00021 39.7 11.6 152 37-209 5-171 (552)
48 3lq1_A 2-succinyl-5-enolpyruvy 84.5 5.7 0.00019 40.2 11.1 113 85-207 51-177 (578)
49 1t9b_A Acetolactate synthase, 84.3 1.9 6.4E-05 44.9 7.4 149 41-204 464-632 (677)
50 2vbf_A Branched-chain alpha-ke 84.1 5.5 0.00019 40.2 10.7 151 37-208 25-190 (570)
51 2lqo_A Putative glutaredoxin R 83.2 2.1 7.1E-05 32.5 5.5 73 239-316 4-82 (92)
52 3zyw_A Glutaredoxin-3; metal b 78.4 4.6 0.00016 31.4 6.2 65 238-307 15-87 (111)
53 1aba_A Glutaredoxin; electron 78.3 3.6 0.00012 30.1 5.3 60 249-308 13-82 (87)
54 3fni_A Putative diflavin flavo 75.9 31 0.0011 28.2 11.9 84 246-334 15-99 (159)
55 3ipz_A Monothiol glutaredoxin- 75.2 3.5 0.00012 31.9 4.6 69 238-308 17-90 (109)
56 2wci_A Glutaredoxin-4; redox-a 74.4 4.4 0.00015 33.0 5.2 67 239-307 35-106 (135)
57 4feg_A Pyruvate oxidase; carba 71.5 5.6 0.00019 40.5 6.3 111 83-204 410-541 (603)
58 3m49_A Transketolase; alpha-be 71.0 16 0.00055 38.0 9.6 38 167-205 228-269 (690)
59 4dik_A Flavoprotein; TM0755, e 69.8 27 0.00093 33.7 10.5 88 242-330 268-360 (410)
60 2c31_A Oxalyl-COA decarboxylas 69.6 7.7 0.00026 39.1 6.8 111 83-204 416-542 (568)
61 3hww_A 2-succinyl-5-enolpyruvy 68.4 8.9 0.0003 38.5 6.9 97 97-204 422-534 (556)
62 3rpe_A MDAB, modulator of drug 68.2 26 0.0009 30.7 9.2 61 251-314 47-107 (218)
63 3uk1_A Transketolase; structur 67.8 12 0.00042 39.0 8.0 85 109-205 188-283 (711)
64 2q62_A ARSH; alpha/beta, flavo 67.4 16 0.00054 32.8 7.7 65 249-314 50-122 (247)
65 2vzf_A NADH-dependent FMN redu 67.3 12 0.00041 31.9 6.7 67 247-314 16-93 (197)
66 2wem_A Glutaredoxin-related pr 67.2 11 0.00038 29.7 5.9 65 238-307 19-92 (118)
67 1v5e_A Pyruvate oxidase; oxido 67.1 14 0.00048 37.4 8.2 110 83-204 403-534 (590)
68 3hly_A Flavodoxin-like domain; 65.5 54 0.0019 26.7 12.2 83 246-334 11-94 (161)
69 3l84_A Transketolase; TKT, str 64.2 19 0.00064 37.1 8.4 98 96-205 119-238 (632)
70 5nul_A Flavodoxin; electron tr 64.1 10 0.00036 30.0 5.3 45 246-297 9-53 (138)
71 3gx1_A LIN1832 protein; APC633 63.6 55 0.0019 26.1 10.1 113 240-362 6-125 (130)
72 1wik_A Thioredoxin-like protei 63.2 8.2 0.00028 29.5 4.4 65 238-307 14-86 (109)
73 3eya_A Pyruvate dehydrogenase 63.1 9.8 0.00034 38.1 6.0 111 83-204 396-524 (549)
74 2a5l_A Trp repressor binding p 62.6 15 0.0005 31.0 6.3 68 246-315 16-96 (200)
75 1sqs_A Conserved hypothetical 61.9 20 0.00069 31.5 7.3 68 247-315 15-104 (242)
76 2uz1_A Benzaldehyde lyase; thi 61.7 16 0.00054 36.7 7.3 111 82-204 408-541 (563)
77 2o1s_A 1-deoxy-D-xylulose-5-ph 61.5 26 0.00088 35.8 8.9 31 175-205 247-280 (621)
78 3gx8_A Monothiol glutaredoxin- 60.3 15 0.00051 28.9 5.5 65 238-308 15-91 (121)
79 3lq1_A 2-succinyl-5-enolpyruvy 60.2 19 0.00064 36.3 7.6 97 96-204 441-555 (578)
80 3u7r_A NADPH-dependent FMN red 60.1 20 0.00067 30.8 6.6 65 248-313 16-90 (190)
81 1q6z_A BFD, BFDC, benzoylforma 59.5 5.9 0.0002 39.5 3.6 111 83-204 392-520 (528)
82 2e6k_A Transketolase; structur 59.4 35 0.0012 35.1 9.5 63 142-205 177-246 (651)
83 1r9j_A Transketolase; domains, 58.9 50 0.0017 34.1 10.6 62 142-205 175-246 (673)
84 3kom_A Transketolase; rossmann 58.6 28 0.00094 36.0 8.6 86 109-205 149-245 (663)
85 3l78_A Regulatory protein SPX; 58.6 19 0.00066 28.2 5.9 42 248-290 8-49 (120)
86 3fz4_A Putative arsenate reduc 58.1 18 0.00061 28.5 5.6 43 248-291 11-53 (120)
87 3qhp_A Type 1 capsular polysac 57.6 56 0.0019 25.8 8.9 104 240-363 34-141 (166)
88 2amj_A Modulator of drug activ 56.9 29 0.00099 29.8 7.3 60 252-314 35-94 (204)
89 2o1x_A 1-deoxy-D-xylulose-5-ph 56.8 28 0.00097 35.5 8.3 31 175-205 252-285 (629)
90 1ozh_A ALS, acetolactate synth 56.4 12 0.00041 37.7 5.3 111 83-204 410-538 (566)
91 2fzv_A Putative arsenical resi 56.0 21 0.00071 32.7 6.4 65 249-314 74-147 (279)
92 1t0i_A YLR011WP; FMN binding p 55.2 31 0.0011 28.8 7.1 68 247-315 14-109 (191)
93 2fz5_A Flavodoxin; alpha/beta 53.9 21 0.00072 27.8 5.5 61 247-315 11-73 (137)
94 3f2v_A General stress protein 53.6 35 0.0012 29.2 7.2 62 253-315 19-83 (192)
95 1rw1_A Conserved hypothetical 53.3 16 0.00053 28.4 4.5 43 248-291 8-50 (114)
96 3gkx_A Putative ARSC family re 53.1 16 0.00055 28.8 4.5 44 247-291 11-54 (120)
97 3f6r_A Flavodoxin; FMN binding 52.8 21 0.00073 28.4 5.4 80 246-332 12-95 (148)
98 1ybh_A Acetolactate synthase, 52.1 45 0.0015 33.6 8.8 111 83-204 416-553 (590)
99 1t1v_A SH3BGRL3, SH3 domain-bi 52.1 18 0.00061 26.6 4.5 52 254-307 22-76 (93)
100 1itz_A Transketolase; calvin c 52.1 55 0.0019 33.7 9.6 86 109-205 160-257 (675)
101 2q28_A Oxalyl-COA decarboxylas 51.5 17 0.00058 36.5 5.5 111 83-204 411-539 (564)
102 3gdw_A Sigma-54 interaction do 51.4 94 0.0032 25.0 10.2 108 240-357 6-122 (139)
103 3rdw_A Putative arsenate reduc 50.5 18 0.00063 28.5 4.5 43 248-291 13-55 (121)
104 2ab1_A Hypothetical protein; H 49.2 4.7 0.00016 32.3 0.7 39 235-273 58-98 (122)
105 2pan_A Glyoxylate carboligase; 49.1 21 0.00072 36.2 5.8 111 83-204 432-575 (616)
106 3l4e_A Uncharacterized peptida 48.5 28 0.00094 30.2 5.7 55 238-295 27-85 (206)
107 1ydg_A Trp repressor binding p 48.1 22 0.00075 30.3 5.0 75 240-315 8-103 (211)
108 2x7j_A 2-succinyl-5-enolpyruvy 47.9 8.8 0.0003 39.0 2.7 99 95-204 459-575 (604)
109 3kkj_A Amine oxidase, flavin-c 47.9 15 0.0005 31.0 3.8 31 239-272 3-33 (336)
110 2kok_A Arsenate reductase; bru 47.7 24 0.00083 27.5 4.8 49 241-291 7-55 (120)
111 2zki_A 199AA long hypothetical 47.6 36 0.0012 28.5 6.3 68 246-315 14-95 (199)
112 1z3e_A Regulatory protein SPX; 47.6 43 0.0015 26.6 6.4 43 247-290 8-50 (132)
113 1w85_A Pyruvate dehydrogenase 47.1 21 0.00073 34.0 5.1 33 172-205 227-263 (368)
114 3rhb_A ATGRXC5, glutaredoxin-C 47.0 28 0.00097 26.3 5.0 67 239-308 19-90 (113)
115 1ovm_A Indole-3-pyruvate decar 46.9 32 0.0011 34.2 6.7 111 83-204 398-527 (552)
116 2iht_A Carboxyethylarginine sy 46.5 17 0.00057 36.6 4.5 111 83-204 426-556 (573)
117 1cfz_A Hydrogenase 2 maturatio 46.3 33 0.0011 28.5 5.6 56 240-299 2-64 (162)
118 1f4p_A Flavodoxin; electron tr 46.0 30 0.001 27.4 5.3 61 247-314 12-75 (147)
119 2fi9_A Outer membrane protein; 45.8 7 0.00024 31.5 1.3 36 238-273 68-104 (128)
120 2fvt_A Conserved hypothetical 45.2 6.8 0.00023 32.0 1.1 36 238-273 67-103 (135)
121 2q9u_A A-type flavoprotein; fl 44.5 1.1E+02 0.0039 28.6 10.0 65 247-315 268-332 (414)
122 3h8q_A Thioredoxin reductase 3 44.1 65 0.0022 24.5 6.8 66 239-308 17-87 (114)
123 2gm2_A Conserved hypothetical 44.1 6.8 0.00023 31.8 0.9 37 237-273 63-100 (132)
124 3q2o_A Phosphoribosylaminoimid 43.9 83 0.0028 29.5 8.8 72 237-316 13-97 (389)
125 3noy_A 4-hydroxy-3-methylbut-2 43.8 68 0.0023 30.4 7.9 109 236-361 57-170 (366)
126 3f0i_A Arsenate reductase; str 43.8 16 0.00056 28.7 3.2 43 248-291 12-54 (119)
127 2ark_A Flavodoxin; FMN, struct 43.5 44 0.0015 27.9 6.2 60 247-314 16-76 (188)
128 2wvg_A PDC, pyruvate decarboxy 43.3 32 0.0011 34.5 6.0 28 177-204 508-536 (568)
129 3hh1_A Tetrapyrrole methylase 43.2 12 0.00043 29.1 2.4 35 236-270 77-114 (117)
130 3nzn_A Glutaredoxin; structura 43.2 27 0.00092 26.1 4.3 68 239-307 22-94 (103)
131 2yan_A Glutaredoxin-3; oxidore 43.2 33 0.0011 25.7 4.8 67 239-307 17-88 (105)
132 3ic4_A Glutaredoxin (GRX-1); s 43.0 28 0.00095 25.1 4.2 66 240-307 13-83 (92)
133 3b6i_A Flavoprotein WRBA; flav 42.9 48 0.0016 27.5 6.3 66 246-314 12-92 (198)
134 2pgn_A Cyclohexane-1,2-dione h 42.7 12 0.00042 37.8 2.8 111 83-204 414-542 (589)
135 2e85_A Hydrogenase 3 maturatio 41.7 67 0.0023 26.5 6.9 58 240-299 5-67 (159)
136 2vbi_A Pyruvate decarboxylase; 41.0 23 0.0008 35.4 4.6 111 83-204 399-528 (566)
137 1id1_A Putative potassium chan 40.7 81 0.0028 25.0 7.2 32 239-273 4-35 (153)
138 1gpu_A Transketolase; transfer 40.6 69 0.0023 33.1 8.1 62 142-205 175-246 (680)
139 2r8o_A Transketolase 1, TK 1; 39.9 84 0.0029 32.3 8.6 62 142-205 173-243 (669)
140 3lyu_A Putative hydrogenase; t 39.8 34 0.0012 27.5 4.6 48 238-285 18-66 (142)
141 1rtt_A Conserved hypothetical 39.7 20 0.0007 30.1 3.4 63 251-315 24-97 (193)
142 3g8r_A Probable spore coat pol 39.7 1.2E+02 0.004 28.7 8.9 61 241-301 137-204 (350)
143 2c42_A Pyruvate-ferredoxin oxi 39.6 1.2E+02 0.004 33.8 10.1 33 172-204 1032-1065(1231)
144 1u6t_A SH3 domain-binding glut 39.3 59 0.002 25.7 5.8 52 252-308 18-81 (121)
145 2wqp_A Polysialic acid capsule 39.1 1.3E+02 0.0046 28.3 9.2 71 241-313 150-227 (349)
146 2bfd_A 2-oxoisovalerate dehydr 39.1 29 0.00099 33.4 4.7 62 142-205 211-283 (400)
147 3rim_A Transketolase, TK; TPP, 39.0 59 0.002 33.8 7.3 63 142-205 195-265 (700)
148 2ohh_A Type A flavoprotein FPR 38.9 59 0.002 30.4 6.9 64 247-314 268-331 (404)
149 3llv_A Exopolyphosphatase-rela 38.5 88 0.003 24.3 7.0 32 238-272 6-37 (141)
150 3okp_A GDP-mannose-dependent a 38.2 76 0.0026 28.9 7.4 78 274-362 257-344 (394)
151 2ct6_A SH3 domain-binding glut 37.9 47 0.0016 25.3 5.0 62 240-307 9-88 (111)
152 3cpk_A Uncharacterized protein 37.7 12 0.00039 31.2 1.4 36 238-273 88-124 (150)
153 1ycg_A Nitric oxide reductase; 37.2 55 0.0019 30.6 6.4 70 241-314 253-326 (398)
154 1t5b_A Acyl carrier protein ph 37.2 96 0.0033 25.6 7.4 68 247-315 16-111 (201)
155 2vbf_A Branched-chain alpha-ke 36.6 57 0.002 32.6 6.7 111 83-204 415-546 (570)
156 1e5d_A Rubredoxin\:oxygen oxid 36.4 95 0.0032 28.9 7.9 70 242-315 255-328 (402)
157 1ijb_A VON willebrand factor; 36.2 52 0.0018 27.7 5.5 57 241-299 119-181 (202)
158 1s3c_A Arsenate reductase; ARS 35.5 34 0.0012 27.7 4.0 42 248-290 10-51 (141)
159 1vli_A Spore coat polysacchari 35.4 1.4E+02 0.0049 28.5 8.8 72 241-313 160-239 (385)
160 2x5n_A SPRPN10, 26S proteasome 35.3 82 0.0028 26.7 6.6 49 250-300 121-174 (192)
161 3fwz_A Inner membrane protein 34.3 44 0.0015 26.4 4.5 32 239-273 8-39 (140)
162 3tem_A Ribosyldihydronicotinam 33.5 67 0.0023 28.0 5.9 66 249-315 17-117 (228)
163 3qmx_A Glutaredoxin A, glutare 33.4 36 0.0012 25.5 3.6 66 239-307 16-83 (99)
164 2hpv_A FMN-dependent NADH-azor 33.2 92 0.0032 26.1 6.7 66 249-315 19-119 (208)
165 1ykg_A SIR-FP, sulfite reducta 32.9 50 0.0017 27.0 4.7 60 247-313 21-80 (167)
166 3mos_A Transketolase, TK; thia 32.6 1E+02 0.0034 31.4 7.7 97 96-205 126-238 (616)
167 1v95_A Nuclear receptor coacti 32.5 1.3E+02 0.0043 24.2 6.8 58 240-298 10-69 (130)
168 1qs0_A 2-oxoisovalerate dehydr 32.3 65 0.0022 31.0 6.0 33 172-205 267-303 (407)
169 3hr4_A Nitric oxide synthase, 32.1 48 0.0016 29.1 4.6 88 239-333 40-133 (219)
170 3fvw_A Putative NAD(P)H-depend 31.6 73 0.0025 26.8 5.6 64 250-315 19-92 (192)
171 2bmv_A Flavodoxin; electron tr 31.4 70 0.0024 25.9 5.4 64 242-313 4-68 (164)
172 1fov_A Glutaredoxin 3, GRX3; a 31.2 1.1E+02 0.0037 20.9 5.8 70 241-314 3-73 (82)
173 3pu6_A Uncharacterized protein 30.8 91 0.0031 25.6 5.9 56 240-299 4-65 (157)
174 4hs4_A Chromate reductase; tri 30.2 70 0.0024 27.2 5.3 60 253-314 26-97 (199)
175 3l9w_A Glutathione-regulated p 29.7 97 0.0033 29.7 6.8 55 238-295 4-74 (413)
176 2nxw_A Phenyl-3-pyruvate decar 28.5 32 0.0011 34.5 3.2 144 41-203 377-536 (565)
177 3orq_A N5-carboxyaminoimidazol 28.1 1.6E+02 0.0054 27.5 7.9 58 237-298 11-81 (377)
178 3r6w_A FMN-dependent NADH-azor 27.9 1.8E+02 0.0062 24.4 7.6 65 249-314 18-111 (212)
179 3l4n_A Monothiol glutaredoxin- 27.7 1.7E+02 0.0059 22.8 6.9 67 239-309 14-88 (127)
180 3od1_A ATP phosphoribosyltrans 27.6 1.2E+02 0.0041 28.9 7.0 56 240-301 338-394 (400)
181 4bby_A Alkyldihydroxyacetoneph 26.7 48 0.0016 34.1 4.1 34 170-204 202-235 (658)
182 2wul_A Glutaredoxin related pr 26.6 85 0.0029 24.6 4.8 64 238-307 19-92 (118)
183 2ywl_A Thioredoxin reductase r 26.3 67 0.0023 26.0 4.4 31 240-273 3-33 (180)
184 3lrx_A Putative hydrogenase; a 26.3 67 0.0023 26.1 4.3 49 237-285 22-71 (158)
185 4gi5_A Quinone reductase; prot 26.2 83 0.0028 28.6 5.3 64 251-315 40-137 (280)
186 1edz_A 5,10-methylenetetrahydr 26.0 85 0.0029 29.2 5.4 56 238-295 177-251 (320)
187 2cwd_A Low molecular weight ph 25.8 1.4E+02 0.0047 24.5 6.2 38 255-300 57-94 (161)
188 3nnk_A Ureidoglycine-glyoxylat 25.2 1.6E+02 0.0053 27.0 7.2 23 278-300 155-177 (411)
189 1n3y_A Integrin alpha-X; alpha 24.7 1E+02 0.0035 25.3 5.4 61 254-314 130-194 (198)
190 2ywx_A Phosphoribosylaminoimid 24.5 2.7E+02 0.0092 23.0 7.6 66 242-310 3-70 (157)
191 3ipr_A PTS system, IIA compone 23.9 2.8E+02 0.0097 22.3 10.8 119 240-360 3-126 (150)
192 2vsy_A XCC0866; transferase, g 23.9 4.4E+02 0.015 25.3 10.6 108 238-362 406-522 (568)
193 4gcm_A TRXR, thioredoxin reduc 23.7 71 0.0024 28.5 4.4 31 239-272 7-37 (312)
194 4ei7_A Plasmid replication pro 23.6 1.5E+02 0.005 28.4 6.7 60 237-299 110-186 (389)
195 3tnl_A Shikimate dehydrogenase 23.5 1.2E+02 0.004 28.1 5.8 34 237-273 153-187 (315)
196 4a5l_A Thioredoxin reductase; 23.5 1.4E+02 0.0047 26.3 6.3 46 237-285 151-196 (314)
197 4hqf_A Thrombospondin-related 23.3 1.2E+02 0.004 26.9 5.8 57 241-299 132-195 (281)
198 2h31_A Multifunctional protein 22.9 3.9E+02 0.014 25.7 9.5 71 239-312 266-342 (425)
199 2aef_A Calcium-gated potassium 22.8 58 0.002 28.0 3.4 55 238-296 9-78 (234)
200 1nh9_A MJA10B, DNA-binding pro 22.8 1.3E+02 0.0045 22.2 4.9 40 237-276 25-67 (87)
201 4e4t_A Phosphoribosylaminoimid 22.3 1.4E+02 0.0047 28.5 6.3 58 237-298 34-104 (419)
202 2g1u_A Hypothetical protein TM 22.2 85 0.0029 25.0 4.1 33 237-272 18-50 (155)
203 2l69_A Rossmann 2X3 fold prote 22.2 1.9E+02 0.0064 21.8 5.6 109 241-362 3-123 (134)
204 3oz2_A Digeranylgeranylglycero 22.1 62 0.0021 29.5 3.7 31 239-272 5-35 (397)
205 3kgw_A Alanine-glyoxylate amin 22.1 1.8E+02 0.0061 26.3 6.9 22 279-300 166-187 (393)
206 3c85_A Putative glutathione-re 21.7 85 0.0029 25.7 4.2 32 238-272 39-71 (183)
207 3le1_A Phosphotransferase syst 21.7 92 0.0031 22.9 3.8 30 236-265 56-85 (88)
208 3mcu_A Dipicolinate synthase, 21.5 55 0.0019 28.5 2.9 37 238-274 5-43 (207)
209 3nhv_A BH2092 protein; alpha-b 21.5 52 0.0018 26.4 2.6 33 238-270 72-104 (144)
210 1pdo_A Mannose permease; phosp 21.2 3E+02 0.01 21.5 10.2 113 240-360 3-121 (135)
211 1rli_A Trp repressor binding p 21.0 2.3E+02 0.008 22.7 6.8 60 253-314 19-95 (184)
212 1d1q_A Tyrosine phosphatase (E 21.0 92 0.0031 25.5 4.1 38 255-300 61-98 (161)
213 3ngx_A Bifunctional protein fo 20.9 85 0.0029 28.6 4.1 51 237-295 149-199 (276)
214 3en0_A Cyanophycinase; serine 20.9 90 0.0031 28.6 4.4 57 239-295 57-116 (291)
215 3msz_A Glutaredoxin 1; alpha-b 20.9 1.2E+02 0.004 21.1 4.3 70 241-313 6-82 (89)
216 3ndc_A Precorrin-4 C(11)-methy 20.9 43 0.0015 30.1 2.2 24 181-204 59-82 (264)
217 1d4a_A DT-diaphorase, quinone 20.5 1.7E+02 0.0058 26.0 6.2 66 249-315 18-118 (273)
No 1
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=1.8e-68 Score=519.60 Aligned_cols=329 Identities=61% Similarity=1.021 Sum_probs=298.2
Q ss_pred ccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEE
Q 017487 33 AVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV 112 (370)
Q Consensus 33 ~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~ 112 (370)
+.++++++++|+++|.+++++|++|+++++|++.++|+++.+.+|+++|+|+||||+||+|++|+++|+|+|++|+|||+
T Consensus 11 ~~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~ 90 (341)
T 2ozl_B 11 GSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPIC 90 (341)
T ss_dssp -CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CcccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEE
Confidence 45678999999999999999999999999999876777777788999998999999999999999999999999999999
Q ss_pred EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 017487 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLK 192 (370)
Q Consensus 113 ~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~ 192 (370)
++++++|++|++|||++++|+++||++|++++||+++.+.|..+++|+||+|.++++|+++|||+|++|+|++|++.+++
T Consensus 91 ~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~~~ea~l~~iP~l~V~~Psd~~e~~~~l~ 170 (341)
T 2ozl_B 91 EFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIK 170 (341)
T ss_dssp ECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHH
T ss_pred EeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCcCCCCCCcchhhHHHHHhccCCCCEEEEeCCHHHHHHHHH
Confidence 95456899999999999999999999999999999998767677799999887779999999999999999999999999
Q ss_pred HHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017487 193 AAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 193 ~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
+|+++++|++||+++.+|+...++.+.+++.++.+++|+++++++|.|++||+||+++..|++|++.|+++|++++|||+
T Consensus 171 ~a~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~ 250 (341)
T 2ozl_B 171 SAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINM 250 (341)
T ss_dssp HHHHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEEee
Confidence 99999999999999887653211111224456678899999999999999999999999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHh-hccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHH
Q 017487 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVED 351 (370)
Q Consensus 273 ~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~-~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~ 351 (370)
++++|||.+.|+++++++++++++||+...|||+++|++.+.+ +++..++.|+.++|++|.|++++..+++.+++|+++
T Consensus 251 ~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~Gg~g~~v~~~l~~~~~~~~l~~~v~~ig~~d~~~~~g~~l~~~~g~~~~~ 330 (341)
T 2ozl_B 251 RTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKD 330 (341)
T ss_dssp CEEETCCHHHHHHHHHHHSCEEEECSSCSTTCHHHHHHHHHHHSTTGGGCSSCCEEECCCSSCCCSSHHHHHTTSCCHHH
T ss_pred eeecCCCHHHHHHHHhcCCeEEEEecCcccCcHHHHHHHHHHhhhcccccCCCEEEEecCCcCCCCcHHHHHHhCcCHHH
Confidence 9999999999999999999999999999899999999999998 776556789999999999999877888999999999
Q ss_pred HHHHHHHHHh
Q 017487 352 IVRAAKRACY 361 (370)
Q Consensus 352 I~~~i~~~l~ 361 (370)
|+++|+++++
T Consensus 331 I~~~i~~~l~ 340 (341)
T 2ozl_B 331 IIFAIKKTLN 340 (341)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 2
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=6.8e-68 Score=512.79 Aligned_cols=322 Identities=41% Similarity=0.684 Sum_probs=294.7
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017487 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~ 115 (370)
++++|++|+++|.+++++|++++++++|++.++|+++.+.+|+++|+|+||||+||+|++|+++|+|+|++|+|||++++
T Consensus 2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t 81 (324)
T 1w85_B 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ 81 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEec
Confidence 35799999999999999999999999999977888887889999998999999999999999999999999999999843
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH
Q 017487 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI 195 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~ 195 (370)
++.|++|++|||++++|+++||++|++++|+|++.+.|..+++|+||++.++++++++|||+|++|+|++|++.++++|+
T Consensus 82 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a~ 161 (324)
T 1w85_B 82 FFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAI 161 (324)
T ss_dssp SGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHHH
Confidence 45888999999999999999999999999999997545566678899888889999999999999999999999999999
Q ss_pred hCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccc
Q 017487 196 RDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI 275 (370)
Q Consensus 196 ~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l 275 (370)
++++|++||+|+.+++.. .+.++++++.+++||++++++|.|++|||||++++.|++|++.|+++|++++|||++++
T Consensus 162 ~~~~Pv~i~~p~~l~r~~---~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~l 238 (324)
T 1w85_B 162 RDNDPVIFLEHLKLYRSF---RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 238 (324)
T ss_dssp HSSSCEEEEEETTTSSSC---CEECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSEE
T ss_pred HcCCCEEEEechHhcCCC---CCCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 999999999998887642 12344456678899999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHH
Q 017487 276 RPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 355 (370)
Q Consensus 276 ~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~ 355 (370)
+|||.+.|+++++++++++++|||+..|||+++|++.+.++++..++.|+.++|.+|.|++++. |++++|+|+++|+++
T Consensus 239 ~P~d~~~i~~~~~~~~~vvvvEe~~~~Gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~~-l~~~~gl~~~~I~~~ 317 (324)
T 1w85_B 239 QPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPFAQ-AESVWLPNFKDVIET 317 (324)
T ss_dssp ESCCHHHHHHHHHHHSCEEEEEEEETTSSSHHHHHHHHHHHHGGGCSSCCEEEEECSSSSCCGG-GHHHHSCCHHHHHHH
T ss_pred cCCCHHHHHHHHhhCCcEEEEeCCCcCChHHHHHHHHHHhhCccccCCCeEEEecCCcCCCcHH-HHHHhCcCHHHHHHH
Confidence 9999999999999999999999999889999999999998876556689999999999999877 889999999999999
Q ss_pred HHHHHh
Q 017487 356 AKRACY 361 (370)
Q Consensus 356 i~~~l~ 361 (370)
|+++++
T Consensus 318 i~~~l~ 323 (324)
T 1w85_B 318 AKKVMN 323 (324)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 999874
No 3
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=3.4e-67 Score=507.91 Aligned_cols=322 Identities=43% Similarity=0.699 Sum_probs=294.4
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017487 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t 114 (370)
+.++||++++++|.+++++|++|+++++|++.++|+++.+.+|+++|+|+||||+||+|++|+++|+|+|++|+|||+++
T Consensus 2 ~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~ 81 (324)
T 1umd_B 2 ALMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEI 81 (324)
T ss_dssp CEECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999999999999999999987788887788999999899999999999999999999999999999984
Q ss_pred ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHH
Q 017487 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAA 194 (370)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 194 (370)
+++.|++|++|||++++|+++|+++|++++|+|++.+.|..+++|+||++.++++|+++|||+|++|+|++|++.+++++
T Consensus 82 t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 161 (324)
T 1umd_B 82 QFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAA 161 (324)
T ss_dssp SSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEEECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEcCCCCCCCCCccchhHHHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence 34588899999999999999999999999999999854555667899988888999999999999999999999999999
Q ss_pred HhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecc
Q 017487 195 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS 274 (370)
Q Consensus 195 ~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~ 274 (370)
+++++|+++|+|+.+++.. .+.++++++.+++||++++++|.|++||++|++++.|++|++.|+++|++++|||+++
T Consensus 162 ~~~~~Pv~i~~p~~l~~~~---~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 238 (324)
T 1umd_B 162 IRDEDPVVFLEPKRLYRSV---KEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRT 238 (324)
T ss_dssp HHCSSCEEEEEEGGGSSSC---CEECCSSCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCE
T ss_pred HhcCCCEEEEechHhcCCC---CCCcCCCCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEece
Confidence 9999999999999887642 1234555667889999999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHH
Q 017487 275 IRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVR 354 (370)
Q Consensus 275 l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~ 354 (370)
++|||.+.|+++++++++++++|||...|||+++|++.+.++++..++.|+.++|.+|.|+++. |++++++|+++|++
T Consensus 239 l~P~d~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~--l~~~~g~~~~~I~~ 316 (324)
T 1umd_B 239 LMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYA--QDKLYLPTVTRILN 316 (324)
T ss_dssp EETCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST--THHHHSCCHHHHHH
T ss_pred ecCCCHHHHHHHHhcCCeEEEEecCCcCCCHHHHHHHHHHHhCccccCCCeEEEeCCCCCCCHH--HHHHhCcCHHHHHH
Confidence 9999999999999999999999999989999999999999887655678999999999999887 88889999999999
Q ss_pred HHHHHHh
Q 017487 355 AAKRACY 361 (370)
Q Consensus 355 ~i~~~l~ 361 (370)
+|+++++
T Consensus 317 ~i~~~l~ 323 (324)
T 1umd_B 317 AAKRALD 323 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999874
No 4
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=1.1e-65 Score=500.46 Aligned_cols=329 Identities=35% Similarity=0.596 Sum_probs=292.3
Q ss_pred cCCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHh
Q 017487 25 SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAA 104 (370)
Q Consensus 25 ~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA 104 (370)
.+++.|.. .++++||++++++|.+++++|++++++++|++ .+|+++.+.+|+++|+|+||||+||+|++|+++|+|+|
T Consensus 10 ~~~~~~~~-~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~-~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A 87 (342)
T 2bfd_B 10 PEPREYGQ-TQKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIA 87 (342)
T ss_dssp ----CCSC-EEEECHHHHHHHHHHHHHHHCTTCEEEETTTT-TTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHH
T ss_pred CCCCCCCc-cCCccHHHHHHHHHHHHHhcCCCEEEEcCccC-CCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHHHH
Confidence 45677754 67789999999999999999999999999998 56778778899999999999999999999999999999
Q ss_pred ccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCccc-CEEEEeCCCCCCCCCCcc-hHHHHHHHccCCCcEEEeeC
Q 017487 105 YYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISV-PIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLKVLSPY 182 (370)
Q Consensus 105 ~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~-pvv~~~~~G~~~~~G~tH-s~~~~a~~~~iP~~~V~~P~ 182 (370)
++|+|||+++++..|++|++|||++++|+++||++|+.++ ||+++.+.|.. ++|++| ++.|+++|+++|||+|++|+
T Consensus 88 ~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~th~~~~d~~~l~~iP~l~V~~Ps 166 (342)
T 2bfd_B 88 VTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGALYHSQSPEAFFAHCPGIKVVIPR 166 (342)
T ss_dssp HTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGGGSSCCCHHHHHTSTTCEEECCS
T ss_pred HCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcchhhHhHHHHHhcCCCcEEEeeC
Confidence 9999999984345889999999999999999999999999 99999753322 456665 78889999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHh
Q 017487 183 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAK 262 (370)
Q Consensus 183 d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~ 262 (370)
|++|++.++++|+++++|++||+|+.+++... +.++.+++.+++|+++++++|.|++|||+|++++.|++|++.|++
T Consensus 167 d~~e~~~~l~~a~~~~~Pv~i~~p~~l~r~~~---~~~~~~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~L~~ 243 (342)
T 2bfd_B 167 SPFQAKGLLLSCIEDKNPCIFFEPKILYRAAA---EEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKE 243 (342)
T ss_dssp SHHHHHHHHHHHHHSSSCEEEEEEGGGTTSCC---EEEESSCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcEEEEecchhcCCCC---CCCCCcccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988876432 234445667889999999999999999999999999999999999
Q ss_pred c-CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHH
Q 017487 263 E-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANL 341 (370)
Q Consensus 263 ~-Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l 341 (370)
+ |++++|||+++++|||.+.|++++++++++|++|||...|||+++|++.+.++++..++.|+.++|++|.|+++. |
T Consensus 244 ~~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~~~~l~~~v~~vg~~d~~~~~~--l 321 (342)
T 2bfd_B 244 KLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPHI--F 321 (342)
T ss_dssp HHCCCEEEEECCEEESCCHHHHHHHHHHHSCEEEEEEEESTTCHHHHHHHHHHHHHGGGCSSCCEEEEECSSCCCST--T
T ss_pred hcCCCEEEEeeeecCCCCHHHHHHHHhcCCEEEEEEeCccCCcHHHHHHHHHHhhCccccCCCeEEEecCCCCChHH--H
Confidence 9 999999999999999999999999999999999999889999999999999887655567899999999888875 8
Q ss_pred HHHhCCCHHHHHHHHHHHHh
Q 017487 342 ERMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 342 ~~~~gl~~~~I~~~i~~~l~ 361 (370)
++++|+|+++|+++|+++++
T Consensus 322 ~~~~gl~~~~I~~~i~~~l~ 341 (342)
T 2bfd_B 322 EPFYIPDKWKCYDALRKMIN 341 (342)
T ss_dssp HHHHSCCHHHHHHHHHHHHT
T ss_pred HHHHCcCHHHHHHHHHHHhc
Confidence 88899999999999999874
No 5
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=1.2e-65 Score=504.20 Aligned_cols=319 Identities=40% Similarity=0.656 Sum_probs=254.9
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017487 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t 114 (370)
+++++|++|+++|.+++++|++|+++++|++.++|+++.+.+|+++|+|+||||+||+|++|+++|+|||++|+|||+++
T Consensus 49 ~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~ 128 (369)
T 1ik6_A 49 MMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEI 128 (369)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEe
Confidence 45789999999999999999999999999987778777788999999899999999999999999999999999999984
Q ss_pred ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017487 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
++..|++|++|||++++|+++|+++|+.++||+++.+ +|.. ++|+||++.++++|+++|||+|++|+|++|++.++++
T Consensus 129 tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~-g~g~~hs~~~~a~l~~iPnl~V~~Psd~~e~~~ll~~ 207 (369)
T 1ik6_A 129 QFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGT-RGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKA 207 (369)
T ss_dssp CCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC------------HHHHHHTCTTCEEECCCSHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCC-CCCccccccHHHHHcCCCCcEEEecCCHHHHHHHHHH
Confidence 3447899999999999999999999999999999985 4533 4789998888999999999999999999999999999
Q ss_pred HHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017487 194 AIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 194 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
|++.++|++||+|+.+++.. .+.++.+++.+++|+++++++|.|++|||+|+++..|++|++.|+ | +++|||++
T Consensus 208 A~~~~~Pv~i~~p~~l~r~~---~~~v~~~~~~~~~G~~~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~ 281 (369)
T 1ik6_A 208 AIRGDDPVVFLEPKILYRAP---REEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQ 281 (369)
T ss_dssp HHHSSSCEEEEEEGGGSSCC---CEEEECSSCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECC
T ss_pred HHhCCCCEEEEEehhhhccC---CCCcCCCcccccCCceEEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeee
Confidence 99999999999999887642 123444566788999999999999999999999999999999996 8 99999999
Q ss_pred cccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHH
Q 017487 274 SIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV 353 (370)
Q Consensus 274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~ 353 (370)
|++|||.+.|++++++++++|++||+...|||+++|++.+.++++..++.|+.++|++|.|++++. |++.++||+++|+
T Consensus 282 ~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GG~g~~v~~~l~~~~~~~l~~pv~~vg~~d~~~~~~~-l~~~~gl~~~~I~ 360 (369)
T 1ik6_A 282 TLNPLDFDTVLKSVSKTGRLIIAHDSPKTGGLGAEVRALVAEKALDRLTAPVIRLAGPDVPQSPIA-ADAAYAPTVERII 360 (369)
T ss_dssp EEETTCHHHHHHHHHHHCCEEEEEEEESTTSHHHHHHHHHHHHSGGGCSSCCEEEEECCCC-------------CHHHHH
T ss_pred ecCCCCHHHHHHHHhccCeEEEEecCCcCCcHHHHHHHHHHhhCccccCCCeEEEcCCCcCCCCHH-HHHHhCcCHHHHH
Confidence 999999999999999999999999999899999999999998876556789999999999998877 8899999999999
Q ss_pred HHHHHHHh
Q 017487 354 RAAKRACY 361 (370)
Q Consensus 354 ~~i~~~l~ 361 (370)
++|+++++
T Consensus 361 ~~i~~~l~ 368 (369)
T 1ik6_A 361 KAIEYVMR 368 (369)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99999874
No 6
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=1.3e-63 Score=485.53 Aligned_cols=321 Identities=39% Similarity=0.612 Sum_probs=286.1
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017487 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t 114 (370)
++++||++|+++|.+++++|++++++++|++.++|+++.+.+|+++|+|+||||+||+|++|+++|+|+|++|+|||+++
T Consensus 3 ~~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~ 82 (338)
T 1qs0_B 3 TTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEI 82 (338)
T ss_dssp EECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred CcchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEe
Confidence 45789999999999999999999999999987788888788999999999999999999999999999999999999984
Q ss_pred ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017487 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
+++.|++|++|||++++|+++|+++|+.++||+++.+.|. +++|++| ++.|+++|+++|||+|++|+|++|+++++++
T Consensus 83 t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~ 161 (338)
T 1qs0_B 83 QFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIA 161 (338)
T ss_dssp SCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHH
T ss_pred ccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 3458889999999999999999999999999999985332 3566555 7888999999999999999999999999999
Q ss_pred HHhCCCCEEEEecccccCCCCC---Ccc----------cccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHH
Q 017487 194 AIRDPDPVVFLENELLYGESFP---VSA----------EVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL 260 (370)
Q Consensus 194 a~~~~~Pv~i~~~~~l~~~~~~---~~~----------~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L 260 (370)
|+++++|++||+|+.+++...+ ..+ .++..++.+++|+++++++|.|++|||+|++++.|++|++.
T Consensus 162 A~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~- 240 (338)
T 1qs0_B 162 SIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEE- 240 (338)
T ss_dssp HHHSSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHHH-
T ss_pred HHhcCCcEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHHH-
Confidence 9999999999999877765322 000 34444566789999999999999999999999999999997
Q ss_pred HhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHH
Q 017487 261 AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAAN 340 (370)
Q Consensus 261 ~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~ 340 (370)
+|++++|||++|++|||.+.|+++++++++++++|||...|||+++|++.+.++++..++.++.++|.+|.|.++.
T Consensus 241 --~Gi~v~vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~gG~g~~V~~~l~~~~~~~l~~~v~~ig~~d~~~~~~-- 316 (338)
T 1qs0_B 241 --SGVDAEVIDLRSLWPLDLDTIVESVKKTGRCVVVHEATRTCGFGAELVSLVQEHCFHHLEAPIERVTGWDTPYPHA-- 316 (338)
T ss_dssp --HCCCCEEEECSEEESCCHHHHHHHHHHHSCEEEEESSCSTTSTHHHHHHHHHHHSSSSCCSCCEEEECCSSCCCST--
T ss_pred --cCCCEEEEeecccCCCCHHHHHHHHhcCCEEEEEecCCcCCcHHHHHHHHHHHhcccccCCCeEEEecCCcCCcHH--
Confidence 6999999999999999999999999999999999999989999999999999887655667899999999988876
Q ss_pred HHHHhCCCHHHHHHHHHHHHh
Q 017487 341 LERMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 341 l~~~~gl~~~~I~~~i~~~l~ 361 (370)
|++.+++|+++|+++|+++++
T Consensus 317 l~~~~g~~~~~I~~~i~~~l~ 337 (338)
T 1qs0_B 317 QEWAYFPGPSRVGAALKKVME 337 (338)
T ss_dssp THHHHSCCHHHHHHHHHHSSC
T ss_pred HHHHHCCCHHHHHHHHHHHhc
Confidence 888899999999999998763
No 7
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=7.8e-56 Score=460.58 Aligned_cols=304 Identities=24% Similarity=0.317 Sum_probs=266.0
Q ss_pred CCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhc
Q 017487 26 NLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY 105 (370)
Q Consensus 26 ~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~ 105 (370)
.++.|.. ++++++|++|+++|.+++++||+++++++|++. +++ +..|+++| |+||||+||+|++|+++|+|||+
T Consensus 303 ~~~~~~~-~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~--~~~--~~~~~~~~-p~R~~d~gIaE~~~v~~a~G~A~ 376 (616)
T 3mos_A 303 SLPSYKV-GDKIATRKAYGQALAKLGHASDRIIALDGDTKN--STF--SEIFKKEH-PDRFIECYIAEQNMVSIAVGCAT 376 (616)
T ss_dssp SCCCCCT-TCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHH--HHS--HHHHHHHC-GGGEEECCSCHHHHHHHHHHHHG
T ss_pred CCccccc-ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCC--Ccc--hhhHHHhC-CCCeEEcCccHHHHHHHHHHHHH
Confidence 4678865 567899999999999999999999999999973 332 57899999 99999999999999999999999
Q ss_pred cCC-eeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC-CCCCCCcc-hHHHHHHHccCCCcEEEee
Q 017487 106 YGL-KPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSP 181 (370)
Q Consensus 106 ~G~-rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P 181 (370)
+|+ +|++.+|+ .|++|++|||++. ++ +++||+++. ++|. .|.+|+|| ++.++++|+++|||+|++|
T Consensus 377 ~G~~~~~~~~f~-~Fl~~a~dqi~~~-a~--------~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P 446 (616)
T 3mos_A 377 RNRTVPFCSTFA-AFFTRAFDQIRMA-AI--------SESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYP 446 (616)
T ss_dssp GGCCEEEEEEEG-GGGGGGHHHHHHH-HH--------TTCCEEEEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECC
T ss_pred cCCCCEEEEehH-HHHHHHHHHHHHH-HH--------hCCCeEEEEECCCccccCCCCcccCHHHHHHhcCCCCCEEEec
Confidence 997 79998876 7889999999986 42 678988887 4676 56689888 6778899999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCc--EEEEEechhHHHHHHHHHH
Q 017487 182 YSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKD--VTITAFSKIVGLSLKAAEI 259 (370)
Q Consensus 182 ~d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~d--v~Iia~G~~~~~al~Aa~~ 259 (370)
+|++|+..+++++++.++|+++|.+|. ..| .+...+..+++|+++++++|.| ++||++|++++.|++|++.
T Consensus 447 ~d~~e~~~~l~~a~~~~gp~~ir~~r~----~~p---~~~~~~~~~~~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~~ 519 (616)
T 3mos_A 447 SDGVATEKAVELAANTKGICFIRTSRP----ENA---IIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAEL 519 (616)
T ss_dssp CSHHHHHHHHHHHHTCCSEEEEECCSS----CCB---CCSCTTCCCCTTCCEEEECCSSEEEEEECCTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEEeCC----CCC---ccCCCcccccCCeEEEEEeCCCCCEEEEEeCHHHHHHHHHHHH
Confidence 999999999999999999999987653 111 2233445678999999999876 9999999999999999999
Q ss_pred HHhcCCceeEEEeccccCCCHHHHHHHHhcC-CeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC-
Q 017487 260 LAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY- 337 (370)
Q Consensus 260 L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~-~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~- 337 (370)
|+++||+++|||+++++|||.++|.++++++ ++|||+|||+..||+|++|++.+.+++ +.++.++|+++ |..+
T Consensus 520 L~~~Gi~v~Vidlr~l~PlD~e~i~~~~~~~~~~vvvvEe~~~~GG~G~~v~~~l~~~~----~~~v~~~g~~~-f~~~g 594 (616)
T 3mos_A 520 LKKEKINIRVLDPFTIKPLDRKLILDSARATKGRILTVEDHYYEGGIGEAVSSAVVGEP----GITVTHLAVNR-VPRSG 594 (616)
T ss_dssp HHTTTCEEEEEECSEEESCCHHHHHHHHHHTTTEEEEEEEEESTTSHHHHHHHHHTTCT----TCEEEEEEECS-CCCCS
T ss_pred HHhcCCCEEEEEeCccCCCCHHHHHHHHHhcCCEEEEEcCCCCCcCHHHHHHHHHHhcC----CCCEEEEeCCC-CCCCC
Confidence 9999999999999999999999999999999 899999999999999999999998754 46899999996 4443
Q ss_pred -HHHHHHHhCCCHHHHHHHHH
Q 017487 338 -AANLERMAVPQVEDIVRAAK 357 (370)
Q Consensus 338 -~~~l~~~~gl~~~~I~~~i~ 357 (370)
.++|++.+|||+++|+++|+
T Consensus 595 ~~~~l~~~~gl~~~~I~~~i~ 615 (616)
T 3mos_A 595 KPAELLKMFGIDRDAIAQAVR 615 (616)
T ss_dssp CHHHHHHHTTCSHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHh
Confidence 46788889999999999886
No 8
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=3.1e-55 Score=458.19 Aligned_cols=299 Identities=24% Similarity=0.289 Sum_probs=267.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017487 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~ 115 (370)
..+|+++|+++|.+++++|++++++++|+....| +.+|+++| |+||||+||+|++|+++|+|||++|+|||+++|
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~----~~~f~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~~ 395 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSG----LVEFSRVH-PHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIY 395 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTT----CHHHHHHC-GGGEEECCSCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcC----hHHHHHhc-CcceEeccccHHHHHHHHHHHHHcCCEEEEEec
Confidence 5789999999999999999999999999974322 46899999 999999999999999999999999999999996
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017487 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
+ .|++|++|||++++|+ +++||+++.. +|..+++|+||++ .++++||++|||+|++|+|++|++.++++
T Consensus 396 ~-~F~~~a~dqi~~~~a~--------~~~pvv~~~~~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~ 466 (629)
T 2o1x_A 396 S-TFLQRAYDQVLHDVAI--------EHLNVTFCIDRAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKY 466 (629)
T ss_dssp H-HHHGGGHHHHHHTTTT--------TTCCCEEEEESBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhh--------cCCCEEEEEECCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence 5 7899999999999984 7899999985 5667779999965 45799999999999999999999999999
Q ss_pred HHhCCCCEEEEecccccCCCCCCccccc-CCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017487 194 AIRDPDPVVFLENELLYGESFPVSAEVL-DSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 194 a~~~~~Pv~i~~~~~l~~~~~~~~~~~~-~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
|++.++|++||++|..++. ++ ++.+.+++|+++++++|.|++||++|+++..|++|++.|+ +++|||+
T Consensus 467 a~~~~~Pv~i~~~r~~~~~-------~~~~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~ 535 (629)
T 2o1x_A 467 AQTHDGPFAIRYPRGNTAQ-------VPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNA 535 (629)
T ss_dssp HHHSSSCEEEECCSSBCCC-------CCTTCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEEC
T ss_pred HHhCCCCEEEEecCCCCCC-------CcccccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEee
Confidence 9999999999988764321 11 2345678999999999999999999999999999999996 8999999
Q ss_pred ccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHH
Q 017487 273 RSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVE 350 (370)
Q Consensus 273 ~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~ 350 (370)
+|++|||.+.+.+++++++++||+||++..||+|++|++.+.+++ ++.|+.++|++|.|+++ .++|++++|+|++
T Consensus 536 ~~~~Pld~~~i~~~~~~~~~vv~vEe~~~~gG~g~~v~~~l~~~~---~~~~v~~ig~~d~f~~~g~~~~l~~~~gl~~~ 612 (629)
T 2o1x_A 536 RFVKPLDEEMLREVGGRARALITVEDNTVVGGFGGAVLEALNSMN---LHPTVRVLGIPDEFQEHATAESVHARAGIDAP 612 (629)
T ss_dssp CEEESCCHHHHHHHHHHCSEEEEEEEEESSSSHHHHHHHHHHHTT---CCCEEEEEEECSSCCCSCCHHHHHHHHTCSHH
T ss_pred CCCCCCcHHHHHHHHhhCCcEEEEecCCCCCCHHHHHHHHHHHhC---CCCCeEEEeeCCcCCCCCCHHHHHHHHCcCHH
Confidence 999999999999999999999999999999999999999999876 35789999999999875 4678999999999
Q ss_pred HHHHHHHHHHhc
Q 017487 351 DIVRAAKRACYR 362 (370)
Q Consensus 351 ~I~~~i~~~l~~ 362 (370)
+|+++|++++..
T Consensus 613 ~I~~~i~~~~~~ 624 (629)
T 2o1x_A 613 AIRTVLAELGVD 624 (629)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHhh
Confidence 999999988743
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.3e-55 Score=455.94 Aligned_cols=299 Identities=21% Similarity=0.301 Sum_probs=266.0
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhccCCeeEEEc
Q 017487 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEF 114 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t 114 (370)
...+|+++|+++|.+++++|++|+++++|+.... + +.+|+++| |+||||+||+|++|+++|+|||++|+|||+++
T Consensus 317 ~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~---~-~~~~~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~ 391 (621)
T 2o1s_A 317 GLPSYSKIFGDWLCETAAKDNKLMAITPAMREGS---G-MVEFSRKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAI 391 (621)
T ss_dssp -CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTT---T-CHHHHHHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred chHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCc---C-hHHHHHhC-CCceEecCcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3578999999999999999999999999997432 2 46899999 99999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCCCCCCCcchH-HHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 017487 115 MTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAAAGVGAQHSH-CYAAWYASVPGLKVLSPYSSEDARGLLK 192 (370)
Q Consensus 115 ~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~~~~G~tHs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~ 192 (370)
|+ .|++|++||+++++|+ +++||+++.+ +|..+++|+||++ .++++|+++|||+|++|+|++|++.+++
T Consensus 392 ~~-~F~~~a~dqi~~~~a~--------~~~pvv~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l~ 462 (621)
T 2o1s_A 392 YS-TFLQRAYDQVLHDVAI--------QKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQMLY 462 (621)
T ss_dssp ET-TGGGGGHHHHHHTTTT--------TTCCCEEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHHH
T ss_pred hH-hHHHHHHHHHHHHHHh--------cCCCEEEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHHH
Confidence 65 7889999999999884 7899999985 5666679999966 4579999999999999999999999999
Q ss_pred HHHhC-CCCEEEEecccccCCCCCCcccccCCCcccccCceEEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEE
Q 017487 193 AAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVIN 271 (370)
Q Consensus 193 ~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~~~~Gk~~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~ 271 (370)
+|++. ++|++||++|..++.. ..++. +.+++|+++++++|.|++|||+|++++.|++| ++|++++|||
T Consensus 463 ~a~~~~~~Pv~i~~~r~~~~~~-----~~~~~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~ 531 (621)
T 2o1s_A 463 TGYHYNDGPSAVRYPRGNAVGV-----ELTPL-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVD 531 (621)
T ss_dssp HHHHCCSSCEEEECCSSBCCCC-----CCCCC-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEE
T ss_pred HHHHcCCCCEEEEeCCCCCCCC-----CCCcc-ccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEe
Confidence 99998 8999999987654321 11222 56789999999999999999999999999999 5699999999
Q ss_pred eccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCH
Q 017487 272 LRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQV 349 (370)
Q Consensus 272 ~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~ 349 (370)
++|++|||.+.|.+++++++++|+|||+...|||+++|++.+.+++ ++.|+.++|++|.|+++ .++|++++|+|+
T Consensus 532 ~~~~~P~d~~~i~~~~~~~~~vv~vEe~~~~gg~g~~v~~~l~~~~---~~~~v~~ig~~d~f~~~g~~~~l~~~~g~~~ 608 (621)
T 2o1s_A 532 MRFVKPLDEALILEMAASHEALVTVEENAIMGGAGSGVNEVLMAHR---KPVPVLNIGLPDFFIPQGTQEEMRAELGLDA 608 (621)
T ss_dssp CCEEESCCHHHHHHHHHHCSEEEEEEEEESTTSHHHHHHHHHHHTT---CCCCEEEEEECSSCCCCSCHHHHHHHTTCSH
T ss_pred cCccCCCCHHHHHHHHccCCeEEEEECCCCCCCHHHHHHHHHHhcC---CCCCeEEEecCCcCCCCCCHHHHHHHHCcCH
Confidence 9999999999999999999999999999999999999999999876 35799999999999875 467999999999
Q ss_pred HHHHHHHHHHHh
Q 017487 350 EDIVRAAKRACY 361 (370)
Q Consensus 350 ~~I~~~i~~~l~ 361 (370)
++|+++|+++++
T Consensus 609 ~~I~~~i~~~l~ 620 (621)
T 2o1s_A 609 AGMEAKIKAWLA 620 (621)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999873
No 10
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.6e-51 Score=430.94 Aligned_cols=323 Identities=16% Similarity=0.114 Sum_probs=261.9
Q ss_pred hhcccCCCCcccccCCCC-----cCCcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHH
Q 017487 7 QKVAAGGGSPVARIRPVV-----SNLRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEK 80 (370)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~ 80 (370)
+.+|+.+.++.++..+.. ...+.|....+++++|++++++|.+++++||++|++++|++.+++++ +.+.+|+++
T Consensus 340 ~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~ 419 (700)
T 3rim_A 340 RREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPP 419 (700)
T ss_dssp HHCHHHHHHHHHHHTTCCCTTTTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCG
T ss_pred hhChHHHHHHHHHhccCCCcchhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhccc
Confidence 345555555555554322 23467766567899999999999999999999999999998666652 335678888
Q ss_pred h-----CC----CcEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe
Q 017487 81 Y-----GP----ERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG 150 (370)
Q Consensus 81 ~-----~p----~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~ 150 (370)
| +| +||||+||+||+|+++|+|||++ |+|||++||+ .|+.++.+|||. .|+ +++||+++.
T Consensus 420 ~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~~gG~~Pv~~tF~-~F~d~~~~~ir~-~al--------~~lpvv~v~ 489 (700)
T 3rim_A 420 SISTKEYTAHWYGRTLHFGVREHAMGAILSGIVLHGPTRAYGGTFL-QFSDYMRPAVRL-AAL--------MDIDTIYVW 489 (700)
T ss_dssp GGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEG-GGGGGGHHHHHH-HHH--------HTCCCEEEE
T ss_pred ccccccCCcccCCceeecCccHHHHHHHHHHHHHcCCCEEEEEecH-HHHHHHHHHHHH-hcC--------CCCCEEEEE
Confidence 7 36 69999999999999999999999 9999999976 788888899986 663 789999998
Q ss_pred C-CCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCC---CCEEEEecccccCCCCCCcccccCC-
Q 017487 151 P-NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDP---DPVVFLENELLYGESFPVSAEVLDS- 223 (370)
Q Consensus 151 ~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~---~Pv~i~~~~~l~~~~~~~~~~~~~~- 223 (370)
. +|. .|.+|+|| +.+++++||++|||+|++|+|++|++.++++|++++ +|++||++|...+ .++.+
T Consensus 490 thdg~gvG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r~~~~-------~~~~~~ 562 (700)
T 3rim_A 490 THDSIGLGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTRQGVP-------VLDGTD 562 (700)
T ss_dssp ECCSGGGCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCSSEEC-------CCTTCC
T ss_pred eCCCcccCCCCCccCChhHHHHHhcCCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEeccccCC-------CcCccc
Confidence 4 554 56799998 567789999999999999999999999999999985 5999998765322 12223
Q ss_pred CcccccCceEEeeeCC--------cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHH--HHHHHHhc--CC
Q 017487 224 SFCLPIGKAKIEREGK--------DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS--TINASVRK--TN 291 (370)
Q Consensus 224 ~~~~~~Gk~~vl~~g~--------dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~--~i~~~~~~--~~ 291 (370)
.+.+++|+ +++++|. |++||++|++++.|++|++.|+++||+++|||++|++|||.+ .+++++.+ ++
T Consensus 563 ~~~~~~G~-~vlr~g~~~~~~~~~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~i~p~D~~~~~~~~~v~~~~~~ 641 (700)
T 3rim_A 563 AEGVARGG-YVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPCLEWFEAQPYEYRDAVLPPTVS 641 (700)
T ss_dssp HHHHHHSC-EEEECCSCCCTTCCCSEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCTTCC
T ss_pred ccccCCCc-EEEecCCccccCCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEEeccccccCcccHHHHHHHhcccce
Confidence 35678898 7899986 999999999999999999999999999999999999999994 45555543 67
Q ss_pred eEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHh
Q 017487 292 RLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 292 ~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~ 361 (370)
++|++|++...|+ .+++.++ -.++|+ |.|+.+ .++|.+++|+|+++|+++|+++++
T Consensus 642 ~~vtvEe~~~~G~-----~~~~~~~--------~~~igi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l~ 699 (700)
T 3rim_A 642 ARVAVEAGVAQCW-----HQLVGDT--------GEIVSI-EHYGESADHKTLFREYGFTAEAVAAAAERALD 699 (700)
T ss_dssp CEEEECSSCSGGG-----HHHHCTT--------CEEECC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHC
T ss_pred EEEEEeCCCchhH-----HHHHhcC--------CcEEcc-CcCcCcCCHHHHHHHhCcCHHHHHHHHHHHhh
Confidence 8999999987654 3444432 267888 888865 578889999999999999999874
No 11
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=4e-51 Score=428.20 Aligned_cols=301 Identities=18% Similarity=0.168 Sum_probs=247.3
Q ss_pred CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHHhCCCcEeechhhHHHHHHHHHHHhc
Q 017487 27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAY 105 (370)
Q Consensus 27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~ 105 (370)
.+.|.. ++++++|++++++|.++++++|+++++++|++.+++++ +.+.+|+++|+|+||||+||+||+|+++|+|||+
T Consensus 370 ~~~~~~-~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R~~d~GIaE~~mv~~A~GlA~ 448 (690)
T 3m49_A 370 LPTYEL-GSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGKNIWYGVREFAMGAAMNGIAL 448 (690)
T ss_dssp CCCCCT-TCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCCEEECCSCHHHHHHHHHHHHH
T ss_pred cccccc-ccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCceEEcCchHHHHHHHHHHHHH
Confidence 466665 57889999999999999999999999999998766653 5567888887799999999999999999999999
Q ss_pred c-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCCCcEEEee
Q 017487 106 Y-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSP 181 (370)
Q Consensus 106 ~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P 181 (370)
+ |+|||++||+ .|+.++..|||+ .| .+++||+++.. +|. .|.+|+|| ++.++++||++|||+|++|
T Consensus 449 ~gG~~P~~~tf~-~Fs~f~~~air~-~a--------l~~lpVv~v~~~~gigvG~dG~THq~ied~a~lr~iPnl~V~~P 518 (690)
T 3m49_A 449 HGGLKTYGGTFF-VFSDYLRPAIRL-AA--------LMQLPVTYVFTHDSIAVGEDGPTHEPIEQLAALRAMPNVSVIRP 518 (690)
T ss_dssp HSSCEEEEEEEG-GGGGGGHHHHHH-HH--------HHTCCCEEEEECCSGGGCTTCGGGCCSSHHHHHHTSTTCEEECC
T ss_pred cCCCEEEEEecH-HHHHHHHHHHHH-HH--------hcCCCcEEEEECCCcCCCCCCCccCCHHHHHHHhcCCCCEEEee
Confidence 9 9999999875 444444456775 56 37899999985 565 56799998 4577899999999999999
Q ss_pred CCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCC----CcccccCceEEeeeCC----cEEEEEechhHHH
Q 017487 182 YSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDS----SFCLPIGKAKIEREGK----DVTITAFSKIVGL 252 (370)
Q Consensus 182 ~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~----~~~~~~Gk~~vl~~g~----dv~Iia~G~~~~~ 252 (370)
+|++|++.++++|+++ ++|++||++|...+ .++.+ .+.++.|+ +++++|. |++||++|++++.
T Consensus 519 ad~~E~~~~l~~Ai~~~~~Pv~ir~~R~~~p-------~~~~~~~~~~~~~~~G~-~vlr~g~~g~~dvtiia~G~~v~~ 590 (690)
T 3m49_A 519 ADGNESVAAWRLALESTNKPTALVLTRQDLP-------TLEGAKDDTYEKVAKGA-YVVSASKKETADVILLATGSEVSL 590 (690)
T ss_dssp SSHHHHHHHHHHHHHCSSSCEEEECCSSEEE-------CCHHHHTTHHHHHHTSC-EEEECCSSSSCSEEEEECTTHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEEeecccCC-------CCCccccccccccCCCe-EEEEecCCCCCCEEEEEechHHHH
Confidence 9999999999999998 79999998764222 11111 14567887 6888875 9999999999999
Q ss_pred HHHHHHHHHhcCCceeEEEeccccCCCH--HHHHHHHh--cCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEE
Q 017487 253 SLKAAEILAKEGISAEVINLRSIRPLDR--STINASVR--KTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERI 328 (370)
Q Consensus 253 al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~--~~i~~~~~--~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~i 328 (370)
|++|++.|+++||+++|||++|++|||. +.+++++. +++++|++|++...| +. +++... ...+
T Consensus 591 Al~Aa~~L~~~GI~~~Vid~~~i~p~D~~d~~~~~~v~~~~~~~~v~vEe~~~~G-~~----~~~~~~--------~~~i 657 (690)
T 3m49_A 591 AVEAQKALAVDGVDASVVSMPSMDRFEAQTAEYKESVLPKAVTKRFAIEMGATFG-WH----RYVGLE--------GDVL 657 (690)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCCTT-TH----HHHTTT--------CEEE
T ss_pred HHHHHHHHHhcCCCeEEEecccCCcCccccHHHHHHHhhccCCeEEEEECCchhh-HH----HHhccC--------CCEE
Confidence 9999999999999999999999999986 45555554 577899999998765 32 444332 2467
Q ss_pred ecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017487 329 AGADVPMPY--AANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 329 g~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
|+ |.|+.+ .++|.+.+|+|+++|+++|++++
T Consensus 658 gi-d~Fg~sg~~~~l~~~~Glt~e~I~~~i~~~l 690 (690)
T 3m49_A 658 GI-DTFGASAPGEKIMEEYGFTVENVVRKVKEML 690 (690)
T ss_dssp CC-CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHC
T ss_pred cc-CcCcCcCCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 87 888864 57888999999999999999864
No 12
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=5.4e-50 Score=416.37 Aligned_cols=285 Identities=13% Similarity=0.102 Sum_probs=238.4
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEE
Q 017487 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV 112 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~ 112 (370)
+.++.+|++++++|.++++.+|+++++++|++.++++. -.+.++|+|+||||+||+||+|+++|+|||++ |+|||+
T Consensus 335 ~~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~~~~---~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~ 411 (632)
T 3l84_A 335 GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTE---LHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFS 411 (632)
T ss_dssp TCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCC---CTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEE
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEecccCCccCcc---hhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEE
Confidence 35788999999999999999999999999997544431 11235677999999999999999999999999 999999
Q ss_pred EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHHHH
Q 017487 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDARG 189 (370)
Q Consensus 113 ~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~ 189 (370)
+||+ .|++|+++||++ .|+ +++||+++. .+|. .|.+|+|| +++++++||++|||+|++|+|++|++.
T Consensus 412 ~~f~-~F~~~~~~~ir~-~a~--------~~~pv~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~ 481 (632)
T 3l84_A 412 ATFF-IFSEYLKPAARI-AAL--------MKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVK 481 (632)
T ss_dssp EEEG-GGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHH
T ss_pred EecH-HHHHHHHHHHHH-Hhc--------cCCCEEEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHH
Confidence 9975 789999999985 663 789999997 3554 56699998 567799999999999999999999999
Q ss_pred HHHHHHhCCCCEEEEecccccCCCCCCcccccCC-CcccccCce-EEeee--CCcEEEEEechhHHHHHHHHHHHHhcCC
Q 017487 190 LLKAAIRDPDPVVFLENELLYGESFPVSAEVLDS-SFCLPIGKA-KIERE--GKDVTITAFSKIVGLSLKAAEILAKEGI 265 (370)
Q Consensus 190 ~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~-~~~~~~Gk~-~vl~~--g~dv~Iia~G~~~~~al~Aa~~L~~~Gi 265 (370)
++++|++.++|++||++|... ++.+ .+..++++. +++++ |.|++||++|++++.|++|++.|+++||
T Consensus 482 ~l~~A~~~~~Pv~ir~~r~~~---------~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi 552 (632)
T 3l84_A 482 AWQIALNADIPSAFVLSRQKL---------KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGF 552 (632)
T ss_dssp HHHHHHHCSSCEEEECCSSCB---------CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCEEEEEcCCCC---------CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCC
Confidence 999999999999999875421 1111 223455554 78888 8999999999999999999999999999
Q ss_pred ceeEEEeccccCCCHHH--HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--HHHH
Q 017487 266 SAEVINLRSIRPLDRST--INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--AANL 341 (370)
Q Consensus 266 ~v~Vi~~~~l~P~d~~~--i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~~~l 341 (370)
+++|||++|++|||.+. +++++.+ ++||++|+|.. .||++ .+ . .++|+ |.|+.+ .++|
T Consensus 553 ~~~Vi~~~~i~PlD~~~~~~~~sv~~-~~vv~vE~~~~-~g~~~------------~~--~-~~iGi-d~Fg~sg~~~~l 614 (632)
T 3l84_A 553 ACNVVSMPCFELFEKQDKAYQERLLK-GEVIGVEAAHS-NELYK------------FC--H-KVYGI-ESFGESGKDKDV 614 (632)
T ss_dssp CEEEEECSBHHHHHTSCHHHHHHHCC-SEEEEECSSCC-GGGGG------------TC--S-EEECC-CSCCCSSCHHHH
T ss_pred CeEEEecCcCCCcchhHHHHHHHhcC-CCEEEEeCChh-hhHHH------------Hh--C-eEEEc-CCCcccCCHHHH
Confidence 99999999999999975 6677777 78999999975 45532 11 2 77998 899875 5788
Q ss_pred HHHhCCCHHHHHHHHHH
Q 017487 342 ERMAVPQVEDIVRAAKR 358 (370)
Q Consensus 342 ~~~~gl~~~~I~~~i~~ 358 (370)
.+++|+|+++|+++|++
T Consensus 615 ~~~~Glt~~~I~~~i~~ 631 (632)
T 3l84_A 615 FERFGFSVSKLVNFILS 631 (632)
T ss_dssp HHHTTCSHHHHHHHHTT
T ss_pred HHHhCcCHHHHHHHHhh
Confidence 89999999999998863
No 13
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=4.3e-50 Score=421.23 Aligned_cols=294 Identities=20% Similarity=0.176 Sum_probs=247.7
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHH---hCC---CcEeechhhHHHHHHHHHHHhcc
Q 017487 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEK---YGP---ERVLDTPITEAGFTGIGVGAAYY 106 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~---~~p---~r~~~~GIaE~~~v~~A~GlA~~ 106 (370)
++++++|++++++|.++++++|++|++++|++.+++++ +.+.+|+++ | | +||||+||+||+|+++|+|||++
T Consensus 392 ~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~-p~~~~R~~d~GIaE~~mv~~AaGlA~~ 470 (711)
T 3uk1_A 392 GETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADGP-GVQWGNHINYGVREFGMSAAINGLVLH 470 (711)
T ss_dssp CCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSSS-SEECCSEEECCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhccC-CCCCCcEEEeCccHHHHHHHHHHHHHc
Confidence 56789999999999999999999999999998655543 334578888 8 8 99999999999999999999995
Q ss_pred -CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeC
Q 017487 107 -GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPY 182 (370)
Q Consensus 107 -G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~ 182 (370)
|+|||+++|+ .|++|+++||++ .|+ +++||+++.. +|. .+++|+|| ++.++++||++|||+|++|+
T Consensus 471 ~G~~Pv~~~f~-~F~~~~~~~ir~-~a~--------~~lpv~~v~thdg~gvG~dG~THq~~ed~a~lr~iPnl~V~~Pa 540 (711)
T 3uk1_A 471 GGYKPFGGTFL-TFSDYSRNALRV-AAL--------MKVPSIFVFTHDSIGLGEDGPTHQSVEHVASLRLIPNLDVWRPA 540 (711)
T ss_dssp SSCEEEEEEEG-GGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCS
T ss_pred CCCEEEEEEhH-HHHHHHHHHHHH-hhh--------cCCCEEEEEECCCcCcCCCCCccCChhHHHHHhcCCCCEEEecC
Confidence 9999999975 899999999986 563 7899999974 454 56699988 56778999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEecccccCCCCCCcccccCCC---cccccCceEEeee--C----CcEEEEEechhHHHH
Q 017487 183 SSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIERE--G----KDVTITAFSKIVGLS 253 (370)
Q Consensus 183 d~~e~~~~l~~a~~~~~Pv~i~~~~~l~~~~~~~~~~~~~~~---~~~~~Gk~~vl~~--g----~dv~Iia~G~~~~~a 253 (370)
|++|++.++++|++.++|+|||++|...+ .++.++ +.++.|++ ++++ | .|++||++|++++.|
T Consensus 541 d~~E~~~~l~~Ai~~~~Pv~ir~~r~~~p-------~~~~~~~~~~~i~~G~~-vl~~~~G~~~~~dvtiia~G~~v~~a 612 (711)
T 3uk1_A 541 DTVETAVAWTYAVAHQHPSCLIFSRQNLA-------FNARTDAQLANVEKGGY-VLRDWDEEIVARKIILIATGSEVELA 612 (711)
T ss_dssp SHHHHHHHHHHHHHSSSCEEEECCSSEEC-------CCCCCHHHHHHGGGSSE-EEECCCSSCCSEEEEEEECTTHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeeCCCCC-------CCCCccccccccCCCeE-EEEecCCCCCCCCEEEEEecHHHHHH
Confidence 99999999999999999999998764322 122222 45678874 6764 7 799999999999999
Q ss_pred HHHHHHHHhcCCceeEEEeccccCCCHHH--HHHHHhcCC-eEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEec
Q 017487 254 LKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTN-RLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAG 330 (370)
Q Consensus 254 l~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~~-~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~ 330 (370)
++|++.|+++||+++|||++|++|||.+. +++++.++. .+|++|++.. +||++.+ . .+..++|+
T Consensus 613 l~Aa~~L~~~GI~~~Vid~~si~plD~~~~~~~~sv~~~~~~~V~vE~~~~-~g~~~~~----g--------~~~~~iGi 679 (711)
T 3uk1_A 613 MKAVEPLAQQGIAARVVSMPSSDVFDRQDAEYRERVLPHGVRRVAIEAGVT-DFWRKYV----G--------LEGGVVGI 679 (711)
T ss_dssp HHHHHHHHHTTEEEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCS-GGGHHHH----T--------TTSEEECC
T ss_pred HHHHHHHHHcCCCeEEEecCcCCccchhHHHHHHHhhccCCeEEEEeCCcc-ccHHHHh----C--------CCceEEEe
Confidence 99999999999999999999999999986 567777776 4899999875 6676433 1 13367998
Q ss_pred CCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Q 017487 331 ADVPMPY--AANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 331 ~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
|.|+.+ .++|.+++|+|+++|++++++++
T Consensus 680 -d~Fg~sg~~~~L~~~~Glt~e~Iv~~~~~~l 710 (711)
T 3uk1_A 680 -DTFGESAPAGVLFKHFGFTVEHVIETAKAVL 710 (711)
T ss_dssp -CSCCCSSCHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred -CCCcCcCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 888875 57899999999999999999876
No 14
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=3.3e-50 Score=422.32 Aligned_cols=296 Identities=18% Similarity=0.146 Sum_probs=247.8
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeE
Q 017487 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPV 111 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~ 111 (370)
++++++|++++++|.++++.+|+++++++|++.+++++ +.+..|+++| |+||||+||+||+|+++|+|||++ |+|||
T Consensus 352 ~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P~ 430 (669)
T 2r8o_A 352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLPY 430 (669)
T ss_dssp CCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred CccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccC-CCCeeecchhHHHHHHHHHHHHHcCCCeEE
Confidence 56789999999999999999999999999998766654 3356788899 999999999999999999999999 89999
Q ss_pred EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcch-HHHHHHHccCCCcEEEeeCCHHHHH
Q 017487 112 VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDAR 188 (370)
Q Consensus 112 ~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~ 188 (370)
+++|+ .|+.++++||++ +|+ +++||+++.+ +|. .+++|+||+ ..++++||++||++|++|+|++|++
T Consensus 431 ~~tf~-~F~~~~~~~ir~-~a~--------~~lpvv~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~ 500 (669)
T 2r8o_A 431 TSTFL-MFVEYARNAVRM-AAL--------MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESA 500 (669)
T ss_dssp EEEEG-GGGGTTHHHHHH-HHH--------TTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred EeehH-HHHHHHHHHHHH-HHh--------cCCCEEEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHH
Confidence 99976 677799999997 563 7899999985 454 356999993 4567999999999999999999999
Q ss_pred HHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCc---ccccCceEEeee--C-CcEEEEEechhHHHHHHHHHHHH
Q 017487 189 GLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF---CLPIGKAKIERE--G-KDVTITAFSKIVGLSLKAAEILA 261 (370)
Q Consensus 189 ~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~---~~~~Gk~~vl~~--g-~dv~Iia~G~~~~~al~Aa~~L~ 261 (370)
.++++|++. ++|++||++|..++. ++..++ .+++|+ +++++ | .|++||++|+++..|++|++.|+
T Consensus 501 ~~l~~a~~~~~~Pv~i~~~r~~~~~-------~~~~~~~~~~~~~G~-~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~ 572 (669)
T 2r8o_A 501 VAWKYGVERQDGPTALILSRQNLAQ-------QERTEEQLANIARGG-YVLKDCAGQPELIFIATGSEVELAVAAYEKLT 572 (669)
T ss_dssp HHHHHHHHCSSSCEEEECCSSEECC-------CCCCHHHHHHGGGSC-EEEECCSSSCSEEEEECGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCC-------CCCccchhhhccCCC-EEEeccCCCCCEEEEEECHHHHHHHHHHHHHH
Confidence 999999997 899999988765431 222222 266785 77888 7 99999999999999999999999
Q ss_pred hcCCceeEEEeccccCCCHHH---HHHHHhcC-CeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC
Q 017487 262 KEGISAEVINLRSIRPLDRST---INASVRKT-NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY 337 (370)
Q Consensus 262 ~~Gi~v~Vi~~~~l~P~d~~~---i~~~~~~~-~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~ 337 (370)
++||+++|||++|++|||.+. +.+++++. +++|++|++.. +||++ ++.+++ .++|+ |.|+.+
T Consensus 573 ~~Gi~~~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~g~~~----~~~~~~--------~~ig~-d~fg~s 638 (669)
T 2r8o_A 573 AEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIA-DYWYK----YVGLNG--------AIVGM-TTFGES 638 (669)
T ss_dssp HHTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEEEEEEG-GGGHH----HHTTSS--------EEEEE-CSCCCS
T ss_pred hcCCCeEEEEeccCCccccchHHHHHHhccccCceEEEEeCCch-hhHHH----HhcCCC--------eEEEc-CCCCCc
Confidence 999999999999999999885 55555442 68999999986 78875 343321 55787 678764
Q ss_pred --HHHHHHHhCCCHHHHHHHHHHHHhc
Q 017487 338 --AANLERMAVPQVEDIVRAAKRACYR 362 (370)
Q Consensus 338 --~~~l~~~~gl~~~~I~~~i~~~l~~ 362 (370)
.++|.+++|+|+++|+++|++++..
T Consensus 639 g~~~~l~~~~Gl~~~~I~~~~~~~~~~ 665 (669)
T 2r8o_A 639 APAELLFEEFGFTVDNVVAKAKELLHH 665 (669)
T ss_dssp SCHHHHHHHTTCSHHHHHHHHHHHC--
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999853
No 15
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=8.7e-49 Score=409.59 Aligned_cols=294 Identities=20% Similarity=0.158 Sum_probs=241.5
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCc-cccchhHH-HHhCCCcEeechhhHHHHHHHHHHHhcc-CCee
Q 017487 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGA-YKISKGLL-EKYGPERVLDTPITEAGFTGIGVGAAYY-GLKP 110 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~-~~~~~~~~-~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp 110 (370)
++++++|+|++++|.++++++|+++++++|++.++++ ++.+.+|+ ++| |+||||+||+||+|+++|+|||++ |+||
T Consensus 352 ~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~v~~a~GlA~~gG~~P 430 (663)
T 3kom_A 352 PVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQE-GANYLSYGVREFGMAAIMNGLSLYGGIKP 430 (663)
T ss_dssp CCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCST-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred CcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccC-CCCeEecCccHHHHHHHHHHHHHcCCCEE
Confidence 5678999999999999999999999999999877665 45556784 889 999999999999999999999999 9999
Q ss_pred EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC-CCCCCCcc-hHHHHHHHccCCCcEEEeeCCHHHH
Q 017487 111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA-AAGVGAQH-SHCYAAWYASVPGLKVLSPYSSEDA 187 (370)
Q Consensus 111 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~-~~~~G~tH-s~~~~a~~~~iP~~~V~~P~d~~e~ 187 (370)
|++||+ .|++++++||++ .| .+++||+++. .+|. .+.+|+|| ++.++++||++|||+|++|+|++|+
T Consensus 431 ~~~tf~-~F~~~~~~~ir~-~a--------~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~e~ 500 (663)
T 3kom_A 431 YGGTFL-VFSDYSRNAIRM-SA--------LMKQPVVHVMSHDSIGLGEDGPTHQPIEHVPSLRLIPNLSVWRPADTIET 500 (663)
T ss_dssp EEEEEG-GGHHHHHHHHHH-HH--------HTTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCCSHHHH
T ss_pred EEEehH-HHHHHHHHHHHH-HH--------hcCCCEEEEEeCCccccCCCCCCcCCHHHHHHHhcCCCcEEEeeCCHHHH
Confidence 999965 789999999986 56 3789999996 3454 56689988 5677899999999999999999999
Q ss_pred HHHHHHHHh-CCCCEEEEecccccCCCCCCcccccCCC---cccccCceEEeee--CCcEEEEEechhHHHHHHHHHHHH
Q 017487 188 RGLLKAAIR-DPDPVVFLENELLYGESFPVSAEVLDSS---FCLPIGKAKIERE--GKDVTITAFSKIVGLSLKAAEILA 261 (370)
Q Consensus 188 ~~~l~~a~~-~~~Pv~i~~~~~l~~~~~~~~~~~~~~~---~~~~~Gk~~vl~~--g~dv~Iia~G~~~~~al~Aa~~L~ 261 (370)
+.++++|++ .++|++||++|...+ .++..+ +.++.|+ +++++ |.|++||++|++++.|++|++.|+
T Consensus 501 ~~~l~~A~~~~~~Pv~ir~~r~~~p-------~~~~~~~~~~~~~~G~-~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~ 572 (663)
T 3kom_A 501 MIAWKEAVKSKDTPSVMVLTRQNLM-------PVVQTQHQVANIARGG-YLVKDNPDAKLTIVATGSEVELAVKVANEFE 572 (663)
T ss_dssp HHHHHHHHHCSSCCEEEECCSSEEC-------CCCCCHHHHHHHTTTC-EEEECCTTCSCEEEECTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEEccCccCC-------CcCccccchhcccCce-EEEEecCCCCEEEEEecHHHHHHHHHHHHHH
Confidence 999999999 699999997754221 122222 2456674 67777 799999999999999999999999
Q ss_pred hcCCceeEEEeccccCCCHHH--HHHHHhcC-CeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC-
Q 017487 262 KEGISAEVINLRSIRPLDRST--INASVRKT-NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY- 337 (370)
Q Consensus 262 ~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~-~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~- 337 (370)
++||+++|||++|++|||.+. +++++.++ ..+|++|++.. .||.+.+ . +..-..+|+ |.|+.+
T Consensus 573 ~~Gi~~~Vi~~~si~p~D~~~~~~~~~vl~~~~~~v~vE~~~~-~g~~~~~----g-------G~~~~~igi-d~Fg~sg 639 (663)
T 3kom_A 573 KKGIKLNVASIPCVEVFATQAHEYKKTVIKDDIPAVFVEMAQP-DMWYKYM----P-------KAGGEVKGI-YSFGESA 639 (663)
T ss_dssp HTTCCCEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-GGGGGGC----C-------TTCEEEECC-CSCCCSS
T ss_pred hcCCCeEEEEcCcCCcccccHHHHHHHhcCCCCeEEEEecCCc-ccHHHHh----c-------ccCCcEEEe-cCCcCCC
Confidence 999999999999999999987 55555554 46899998764 4554321 0 123467888 888764
Q ss_pred -HHHHHHHhCCCHHHHHHHHHHH
Q 017487 338 -AANLERMAVPQVEDIVRAAKRA 359 (370)
Q Consensus 338 -~~~l~~~~gl~~~~I~~~i~~~ 359 (370)
.++|.+++|+|+++|+++++++
T Consensus 640 ~~~~l~~~~Glt~e~I~~~~~~~ 662 (663)
T 3kom_A 640 PAEDLFKRFGFTVENISNIVAKY 662 (663)
T ss_dssp CHHHHHHHHTCSHHHHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHhh
Confidence 5788899999999999999764
No 16
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=6.5e-49 Score=412.93 Aligned_cols=302 Identities=18% Similarity=0.193 Sum_probs=246.7
Q ss_pred CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCcc-ccchhHHH------HhCCCcEeechhhHHHHHHH
Q 017487 27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAY-KISKGLLE------KYGPERVLDTPITEAGFTGI 99 (370)
Q Consensus 27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~-~~~~~~~~------~~~p~r~~~~GIaE~~~v~~ 99 (370)
++.|...++++++|++++++|.++++++|+++++++|++.+++++ +.+..|++ +| |+||||+||+||+|+++
T Consensus 346 ~~~~~~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~~-p~R~~d~gIaE~~~vg~ 424 (680)
T 1gpu_A 346 LPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGNY-SGRYIRYGIREHAMGAI 424 (680)
T ss_dssp SCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEET-TCCEEECCSCHHHHHHH
T ss_pred chhhccCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccCC-CCceecCCccHHHHHHH
Confidence 355532366789999999999999999999999999998666553 11234777 88 99999999999999999
Q ss_pred HHHHhccC-Ce-eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCC
Q 017487 100 GVGAAYYG-LK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVP 174 (370)
Q Consensus 100 A~GlA~~G-~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP 174 (370)
|+|||++| +| ||+++|+ .|+.++++|||+ .| .+++||+++.. +|. .+++|+|| +..++++||++|
T Consensus 425 a~GlA~~Gg~~~P~~~~f~-~F~~~~~~air~-~a--------~~~lpvv~v~t~~g~g~G~dG~tHq~~edla~lr~iP 494 (680)
T 1gpu_A 425 MNGISAFGANYKPYGGTFL-NFVSYAAGAVRL-SA--------LSGHPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLP 494 (680)
T ss_dssp HHHHHHHCTTCEEEEEEEH-HHHGGGHHHHHH-HH--------HHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSS
T ss_pred HHHHHhcCCCceEEEeehH-HHHHHHHHHHHH-HH--------hcCCCEEEEEeCCccccCCCCCccCCHHHHHHhcCCC
Confidence 99999998 99 9999976 777899999987 66 37899999974 554 35699998 346679999999
Q ss_pred CcEEEeeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCcc-cccCceEEeeeC--CcEEEEEechhH
Q 017487 175 GLKVLSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSFC-LPIGKAKIEREG--KDVTITAFSKIV 250 (370)
Q Consensus 175 ~~~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~~-~~~Gk~~vl~~g--~dv~Iia~G~~~ 250 (370)
|++|++|+|++|++.++++|+++ ++|++||++|...+ .++.+++. +++|+ +++++| .|++||++|+++
T Consensus 495 ~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r~~~~-------~~~~~~~~~~~~G~-~vl~~g~~~dvtiva~G~~v 566 (680)
T 1gpu_A 495 NIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLP-------QLEGSSIESASKGG-YVLQDVANPDIILVATGSEV 566 (680)
T ss_dssp SCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCSSCBC-------CCTTCCHHHHTTSC-EEEECCSSCSEEEEECTHHH
T ss_pred CCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecCCCCC-------CCCCcchhhccCCC-EEEecCCCCCEEEEEEcHHH
Confidence 99999999999999999999997 89999998764322 22223344 67784 788887 899999999999
Q ss_pred HHHHHHHHHHHhcCCceeEEEeccccCCCHHH--HHHHHhcCC-eEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEE
Q 017487 251 GLSLKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKTN-RLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVER 327 (370)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~~-~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ 327 (370)
+.|++|++.|+++||+++|||++|++|||.+. +++++.+++ ++|++|++.. +||++.+ . . +
T Consensus 567 ~~al~Aa~~L~~~Gi~~~Vvd~~~l~pld~~~~~~~~sv~~~~~~~v~vE~~~~-~g~~~~v------------~--~-~ 630 (680)
T 1gpu_A 567 SLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIMSVEVLAT-TCWGKYA------------H--Q-S 630 (680)
T ss_dssp HHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEEEECSSCS-TTGGGTC------------S--E-E
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCcchhhhHHHHHHHhccCCceEEEeCCcc-ccHHHhc------------C--c-c
Confidence 99999999999999999999999999999985 555666654 5599999987 7876432 1 1 2
Q ss_pred EecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhccc
Q 017487 328 IAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSV 364 (370)
Q Consensus 328 ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~ 364 (370)
+++ |.|+.+ .++|++++|+|+++|+++|+++++..+
T Consensus 631 ~gv-~~f~~~g~~~~l~~~~gl~~~~I~~~i~~~l~~~~ 668 (680)
T 1gpu_A 631 FGI-DRFGASGKAPEVFKFFGFTPEGVAERAQKTIAFYK 668 (680)
T ss_dssp ECC-CSCCCCSCHHHHHHHTTCSHHHHHHHHHHHHHHHT
T ss_pred eee-CcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHhhc
Confidence 676 566543 467889999999999999999986444
No 17
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=1.4e-48 Score=410.05 Aligned_cols=299 Identities=18% Similarity=0.197 Sum_probs=247.1
Q ss_pred CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc-cchhHHH-HhCCCcEeechhhHHHHHHHHHHHh
Q 017487 27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLLE-KYGPERVLDTPITEAGFTGIGVGAA 104 (370)
Q Consensus 27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~-~~~~~~~-~~~p~r~~~~GIaE~~~v~~A~GlA 104 (370)
.+.|...++++++|++++++|.++++++|+++++++|++.++++.. .+..|++ +| |+||||+||+|++|+++|+|||
T Consensus 356 ~~~~~~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~-~~R~id~gIaE~~~v~~a~GlA 434 (675)
T 1itz_A 356 LPKYTPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERNVRFGVREHGMGAICNGIA 434 (675)
T ss_dssp SCCCCTTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCBCCCCSCHHHHHHHHHHHH
T ss_pred hhhhccCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCC-CCCeEeecccHHHHHHHHHHHH
Confidence 3455333678899999999999999999999999999986555421 1234776 88 9999999999999999999999
Q ss_pred ccC--CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCCC-CCCCCcc-hHHHHHHHccCCCcEEE
Q 017487 105 YYG--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGAA-AGVGAQH-SHCYAAWYASVPGLKVL 179 (370)
Q Consensus 105 ~~G--~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~~-~~~G~tH-s~~~~a~~~~iP~~~V~ 179 (370)
++| +|||++||+ .|+.++++||++ +|+ +++||+++.. +|.. +++|+|| +..++++||++||++|+
T Consensus 435 ~~G~~~~P~~~t~~-~F~~~~~~~ir~-~a~--------~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~ 504 (675)
T 1itz_A 435 LHSPGFVPYCATFF-VFTDYMRGAMRI-SAL--------SEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILML 504 (675)
T ss_dssp TTCTTCEEEEEEEG-GGHHHHHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHSSSSCEEE
T ss_pred hcCCCCEEEEEEHH-HHHHHHHHHHHH-HHh--------cCCCEEEEEECCccccCCCCCCcCcHHHHHHhccCCCeEEE
Confidence 999 999999976 677899999986 563 7899999983 5544 5699999 34557999999999999
Q ss_pred eeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCc-ccccCceEEeee---C--CcEEEEEechhHHH
Q 017487 180 SPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIERE---G--KDVTITAFSKIVGL 252 (370)
Q Consensus 180 ~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~-~~~~Gk~~vl~~---g--~dv~Iia~G~~~~~ 252 (370)
+|+|++|++.++++|++. ++|++||++|...+ .++.+.+ .+++| ++++++ | .|++||++|++++.
T Consensus 505 ~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~p-------~~~~~~~~~~~~G-a~vl~~~~~G~~~dv~iva~G~~v~~ 576 (675)
T 1itz_A 505 RPADGNETAGAYKVAVLNRKRPSILALSRQKLP-------HLPGTSIEGVEKG-GYTISDNSTGNKPDLIVMGTGSELEI 576 (675)
T ss_dssp CCCSHHHHHHHHHHHHHCTTSCEEEEECSSCBC-------CCTTCCHHHHTTS-SEEEEECCSTTCCSEEEEECGGGHHH
T ss_pred ECCCHHHHHHHHHHHHHhCCCcEEEEecCCCCC-------CCCCccccccccC-CEEEecccCCCCCCEEEEEECHHHHH
Confidence 999999999999999997 89999998864222 1222333 47788 578888 7 89999999999999
Q ss_pred HHHHHHHHHhcCCceeEEEeccccCCCHHH--HHHHHhcC--CeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEE
Q 017487 253 SLKAAEILAKEGISAEVINLRSIRPLDRST--INASVRKT--NRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERI 328 (370)
Q Consensus 253 al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~--i~~~~~~~--~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~i 328 (370)
|++|++.|+++||+++|||++|++|||.+. +++++.++ +++|++|++.. +||++. + ..+..++
T Consensus 577 al~Aa~~L~~~Gi~v~Vv~~~~~~pld~~~~~~~~~v~~~~~~~vv~vE~~~~-~G~~~~----~--------~~~~~~i 643 (675)
T 1itz_A 577 AAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESVLPAAVTARISIEAGST-LGWQKY----V--------GAQGKAI 643 (675)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCHHHHHTSCHHHHHHHSCTTCCCEEEECSSCC-TTTHHH----H--------CSSCEEE
T ss_pred HHHHHHHHHhcCCcEEEEEeccCcccccchHHHHHHHhccCCceEEEEECCcc-ccHHHh----c--------CCCceEE
Confidence 999999999999999999999999999986 44555554 68999999987 788862 2 1355789
Q ss_pred ecCCCCCCC--HHHHHHHhCCCHHHHHHHHHH
Q 017487 329 AGADVPMPY--AANLERMAVPQVEDIVRAAKR 358 (370)
Q Consensus 329 g~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~ 358 (370)
|+ |.|+.+ .++|++++|+|+++|+++|++
T Consensus 644 g~-d~fg~sg~~~~l~~~~gl~~~~I~~~i~~ 674 (675)
T 1itz_A 644 GI-DKFGASAPAGTIYKEYGITVESIIAAAKS 674 (675)
T ss_dssp CC-CSCCCSSCHHHHHHHHTCSHHHHHHHHTT
T ss_pred Ee-CCCCCCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 99 888764 467899999999999999864
No 18
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=5.1e-49 Score=413.09 Aligned_cols=297 Identities=18% Similarity=0.150 Sum_probs=250.0
Q ss_pred CcccccccccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc-c--chhHHH-HhCCCcEeechhhHHHHHHHHHH
Q 017487 27 LRNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-I--SKGLLE-KYGPERVLDTPITEAGFTGIGVG 102 (370)
Q Consensus 27 ~~~~~~~~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~-~--~~~~~~-~~~p~r~~~~GIaE~~~v~~A~G 102 (370)
.+.| ++++++|++++++|.++++++|+++++++|++.+++++. . +..|++ +| |+||||+||+|++|+++|+|
T Consensus 345 ~p~~---~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~-~~R~id~GIaE~~~~~~a~G 420 (673)
T 1r9j_A 345 LPTN---SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK-EGRYIRFGVREHAMCAILNG 420 (673)
T ss_dssp SCCC---CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT-TCCEEECCSCHHHHHHHHHH
T ss_pred cccc---ccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC-CCCeEecCccHHHHHHHHHH
Confidence 3555 567899999999999999999999999999986666541 0 233776 89 99999999999999999999
Q ss_pred Hhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeC-CCC-CCCCCCcc-hHHHHHHHccCCCcEE
Q 017487 103 AAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGP-NGA-AAGVGAQH-SHCYAAWYASVPGLKV 178 (370)
Q Consensus 103 lA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~G~-~~~~G~tH-s~~~~a~~~~iP~~~V 178 (370)
||++ |++||+++|+ .|+.++++||++ +|+ +++||+++.. +|. .+++|+|| +..++++++++||++|
T Consensus 421 lA~~GG~~P~~~~~~-~F~~~~~~~ir~-~a~--------~~~pvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V 490 (673)
T 1r9j_A 421 LDAHDGIIPFGGTFL-NFIGYALGAVRL-AAI--------SHHRVIYVATHDSIGVGEDGPTHQPVELVAALRAMPNLQV 490 (673)
T ss_dssp HHHHSSCEEEEEEEG-GGGGGGHHHHHH-HHH--------HTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHHSTTCEE
T ss_pred HHhcCCCEEEEEehH-HHHHHHHHHHHH-HHh--------cCCCEEEEEECCccCcCCCCcccCCHHHHHHHcCCCCCEE
Confidence 9999 6999999976 677899999987 663 7899999974 554 45699999 3455799999999999
Q ss_pred EeeCCHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCc-ccccCceEEeeeC--CcEEEEEechhHHHHH
Q 017487 179 LSPYSSEDARGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREG--KDVTITAFSKIVGLSL 254 (370)
Q Consensus 179 ~~P~d~~e~~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~-~~~~Gk~~vl~~g--~dv~Iia~G~~~~~al 254 (370)
++|+|++|+..++++|++. ++|++||++|...+ .++.+.+ .+++| ++++++| .|++||++|+++..|+
T Consensus 491 ~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r~~~~-------~~~~~~~~~~~~G-a~vl~~g~~~dv~lia~G~~v~~al 562 (673)
T 1r9j_A 491 IRPSDQTETSGAWAVALSSIHTPTVLCLSRQNTE-------PQSGSSIEGVRHG-AYSVVDVPDLQLVIVASGSEVSLAV 562 (673)
T ss_dssp ECCSSHHHHHHHHHHHHHCTTCCEEEECCSSEEC-------CCTTCCHHHHHTS-CEEEECCTTCSEEEEECGGGHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCC-------CCCCcccccccCC-CEEEeeCCCCCEEEEEechhHHHHH
Confidence 9999999999999999997 89999998865332 1222333 47788 5788888 8999999999999999
Q ss_pred HHHHHHHhcCCceeEEEeccccCCCHHH---HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecC
Q 017487 255 KAAEILAKEGISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGA 331 (370)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~---i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~ 331 (370)
+|++.|+++ |+++|||++|++|||.+. +.+++++++++|++|++.. +||++.+ ++. +|+
T Consensus 563 ~Aa~~L~~~-i~~~Vv~~~sl~pld~~~~~~i~~~~~~~~~vv~vE~~~~-~g~~~~v--------------~~~-~g~- 624 (673)
T 1r9j_A 563 DAAKALSGE-LRVRVVSMPCQELFDAQPDTYRQAVLPAGVPVVSVEAYVS-FGWEKYS--------------HAH-VGM- 624 (673)
T ss_dssp HHHHHHTTT-CCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC--------------SEE-ESC-
T ss_pred HHHHHHHhc-CCEEEEeCCCCchhhcccHHHHHHHhccCCeEEEEeCCCc-cchHHhc--------------Cce-EEe-
Confidence 999999999 999999999999999985 8888989889999999987 7776422 233 888
Q ss_pred CCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhcc
Q 017487 332 DVPMPY--AANLERMAVPQVEDIVRAAKRACYRS 363 (370)
Q Consensus 332 d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~ 363 (370)
|.|+.+ .++|++++|+|+++|+++|++++++.
T Consensus 625 d~f~~sg~~~~L~~~~g~~~~~I~~~i~~~l~~~ 658 (673)
T 1r9j_A 625 SGFGASAPAGVLYKKFGITVEEVVRTGRELAKRF 658 (673)
T ss_dssp SSCCCSSCHHHHHHHTTCSHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 888764 47899999999999999999998543
No 19
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=6.9e-49 Score=411.15 Aligned_cols=290 Identities=18% Similarity=0.103 Sum_probs=242.1
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccc-cchhHHH-HhCCCcEeechhhHHHHHHHHHHHhccC-Cee
Q 017487 34 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYK-ISKGLLE-KYGPERVLDTPITEAGFTGIGVGAAYYG-LKP 110 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~-~~~~~~~-~~~p~r~~~~GIaE~~~v~~A~GlA~~G-~rp 110 (370)
++++++|++++++|.++++++|+++++++|++.+++++. .+.+|++ +| |+||||+||+|++|+++|+|||++| +||
T Consensus 346 ~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P 424 (651)
T 2e6k_A 346 DKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANP-LGRYLHFGVREHAMGAILNGLNLHGGYRA 424 (651)
T ss_dssp CSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred CccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEE
Confidence 457899999999999999999999999999986555432 3456887 89 9999999999999999999999998 999
Q ss_pred EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe-CCCC-CCCCCCcch-HHHHHHHccCCCcEEEeeCCHHHH
Q 017487 111 VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNGA-AAGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDA 187 (370)
Q Consensus 111 ~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~-~~~~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~ 187 (370)
|++||+ .|+.++++||+. .| .+++||+++. .+|. .+++|+||+ ..++++||++|||+|++|+|++|+
T Consensus 425 ~~~t~~-~F~~~~~~air~-~a--------~~~lpvv~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~ 494 (651)
T 2e6k_A 425 YGGTFL-VFSDYMRPAIRL-AA--------LMGVPTVFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYET 494 (651)
T ss_dssp EEEEEG-GGGGGSHHHHHH-HH--------HHTCCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHH
T ss_pred EEEeHH-HHHHHHHHHHHH-HH--------hcCCCEEEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHH
Confidence 999986 566788899876 56 3789999996 4554 456999993 355799999999999999999999
Q ss_pred HHHHHHHHhC-CCCEEEEecccccCCCCCCcccccCCCc-ccccCceEEeeeC--CcEEEEEechhHHHHHHHHHHHHhc
Q 017487 188 RGLLKAAIRD-PDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREG--KDVTITAFSKIVGLSLKAAEILAKE 263 (370)
Q Consensus 188 ~~~l~~a~~~-~~Pv~i~~~~~l~~~~~~~~~~~~~~~~-~~~~Gk~~vl~~g--~dv~Iia~G~~~~~al~Aa~~L~~~ 263 (370)
+.++++|++. ++|++||++|..++. ++.+++ .++.| .+++++| .|++||++|+++..|++|++.|+++
T Consensus 495 ~~~l~~A~~~~~~Pv~i~~~r~~~~~-------~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~ 566 (651)
T 2e6k_A 495 FYAWLVALRRKEGPTALVLTRQAVPL-------LSPEKARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREK 566 (651)
T ss_dssp HHHHHHHHHCCSSCEEEECCSSCBCC-------CCHHHHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCEEEEEeCCCCCC-------CCcchhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhc
Confidence 9999999997 899999988754331 221122 36677 4788887 8999999999999999999999999
Q ss_pred CCceeEEEeccccCCCHHH---HHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCC--H
Q 017487 264 GISAEVINLRSIRPLDRST---INASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPY--A 338 (370)
Q Consensus 264 Gi~v~Vi~~~~l~P~d~~~---i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~--~ 338 (370)
||+++|||++|++|||.+. +.+++++++++|++|++.. +||++.+ + .++|+ |.|+.+ .
T Consensus 567 Gi~~~Vv~~~~~~p~d~~~~~~~~~v~~~~~~vv~vE~~~~-~G~~~~v--------------~-~~ig~-d~f~~sg~~ 629 (651)
T 2e6k_A 567 GVRVRVVSLPSFELFAAQPEAYRKEVLPPGLPVVAVEAGAS-LGWERYA--------------H-KVVAL-DRFGASAPY 629 (651)
T ss_dssp TCCEEEEECSCHHHHHTSCHHHHHHHSCTTSCEEEECSSCC-TTGGGTC--------------S-EEECC-CSCCCSCCT
T ss_pred CCcEEEEecCcCCccccccHHHHHHHhCcCCeEEEEeCCcc-CchHHhC--------------C-CEEEe-CCCCCCCCH
Confidence 9999999999999999995 5444444578999999987 7876422 3 78999 888764 3
Q ss_pred HHHHHHhCCCHHHHHHHHHHH
Q 017487 339 ANLERMAVPQVEDIVRAAKRA 359 (370)
Q Consensus 339 ~~l~~~~gl~~~~I~~~i~~~ 359 (370)
++|++++|+|+++|+++|+++
T Consensus 630 ~~l~~~~gl~~~~I~~~i~~~ 650 (651)
T 2e6k_A 630 PEVYERLGFTPERVAEAFLSL 650 (651)
T ss_dssp THHHHHTTCCHHHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 688899999999999999865
No 20
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=2.2e-45 Score=393.93 Aligned_cols=309 Identities=19% Similarity=0.196 Sum_probs=254.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCC--------------CCCccccchhHHHHhCCCcEeechhhHHHHHHHHH
Q 017487 36 QMMVREALNSALDEEMSADPKVFLMGEEVGE--------------YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGV 101 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~--------------~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~ 101 (370)
..+|..+++.+|.+++++|++|+++++|++. .+|.|..+.+|.++|+|+||||+||+|++++|+|+
T Consensus 590 ~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~ 669 (933)
T 2jgd_A 590 LFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEY 669 (933)
T ss_dssp CBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHH
Confidence 5789999999999999999999999999985 34556678889999999999999999999999999
Q ss_pred HHhccCCe--eEEEcccchHHH---HHHHHHHHHh-hhccccCCCCcccCEEEEeCCCCCCCCCCcchH-HHHHHHc--c
Q 017487 102 GAAYYGLK--PVVEFMTFNFSM---QAIDHIINSA-AKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSH-CYAAWYA--S 172 (370)
Q Consensus 102 GlA~~G~r--p~~~t~~~~f~~---ra~dqi~~~~-a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~-~~~a~~~--~ 172 (370)
|+|++|.+ |+++.++++|++ |++|||+++. +++. +++|||++.+.|.. +.|++||+ .+++++. +
T Consensus 670 G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~------~~~~vv~~l~~G~~-g~G~~Hss~~~E~~l~~~~ 742 (933)
T 2jgd_A 670 GYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWG------RMCGLVMLLPHGYE-GQGPEHSSARLERYLQLCA 742 (933)
T ss_dssp HHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHC------CCCCCEEEEECCCS-SSCTTSSCCCHHHHHHTCC
T ss_pred HHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHc------cCCCEEEEEeCCCC-CCCcccccchHHHHHHHhC
Confidence 99999998 999866778886 9999999988 7763 68899999986654 44777744 4677775 5
Q ss_pred CCCcEEEeeCCHHHHHHHHHHHH-hC-CCCEEEEecccccCCCCCCc--ccccCCCcccccCceEEeeeCCcE--EEEEe
Q 017487 173 VPGLKVLSPYSSEDARGLLKAAI-RD-PDPVVFLENELLYGESFPVS--AEVLDSSFCLPIGKAKIEREGKDV--TITAF 246 (370)
Q Consensus 173 iP~~~V~~P~d~~e~~~~l~~a~-~~-~~Pv~i~~~~~l~~~~~~~~--~~~~~~~~~~~~Gk~~vl~~g~dv--~Iia~ 246 (370)
+|||+|++|+|+.|++.++++++ +. ++|++|++||.+++.+.... .++++..+.+++|++.+++ |.|+ +|+++
T Consensus 743 ~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~ 821 (933)
T 2jgd_A 743 EQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCS 821 (933)
T ss_dssp TTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEEC
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEc
Confidence 69999999999999999999985 64 89999999999887532221 1222345667889888777 8899 77788
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC---eEEEEecCCCCCChHHHHHHHHHhhccCCCCC
Q 017487 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN---RLVTVEEGFPQHGVGAEICASVIEESFGYLDA 323 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~---~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~ 323 (370)
|.++..+++|++.|+++ +++|||+++|+|||.+.|.+++++++ +||++||+..+||+|+.|+..+.+.++. +.
T Consensus 822 G~v~~~l~aa~~~l~~~--~v~VIdl~~l~Pld~e~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~~~~~~--~~ 897 (933)
T 2jgd_A 822 GKVYYDLLEQRRKNNQH--DVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPF--GA 897 (933)
T ss_dssp TTHHHHHHHHHHHTTCC--SEEEEEECEEESCCHHHHHHHHGGGTTCCEEEEEEEEETTSTTHHHHHHHHHTTSCT--TC
T ss_pred hHHHHHHHHHHHHcccC--CeEEEEeeccCCCCHHHHHHHHHhCCCCceEEEEecCCCcCCHHHHHHHHHHHhccc--CC
Confidence 88877777777888765 89999999999999999999999998 8999999999999999999999886531 36
Q ss_pred CEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 017487 324 PVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 357 (370)
Q Consensus 324 ~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~ 357 (370)
++.++|.+|.+.|... +++.+....+.|++++.
T Consensus 898 ~v~~vg~~d~~~pa~g-~~~~h~~~~~~i~~~a~ 930 (933)
T 2jgd_A 898 SLRYAGRPASASPAVG-HMSVHQKQQQDLVNDAL 930 (933)
T ss_dssp EEEEEEECCCSSSSCS-CHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCcCCCCcC-CHHHHHHHHHHHHHHHh
Confidence 8999999999887432 23344556777777665
No 21
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=7.6e-45 Score=387.78 Aligned_cols=286 Identities=18% Similarity=0.203 Sum_probs=235.8
Q ss_pred HHHHHH--HHHHhcCCCeEEecCCCCCC--------------CCccccchhH------HHHhCCCcEeechhhHHHHHHH
Q 017487 42 ALNSAL--DEEMSADPKVFLMGEEVGEY--------------QGAYKISKGL------LEKYGPERVLDTPITEAGFTGI 99 (370)
Q Consensus 42 a~~~~L--~~l~~~~~~ivvi~~Dl~~~--------------~g~~~~~~~~------~~~~~p~r~~~~GIaE~~~v~~ 99 (370)
+++++| .++++++++|+++++|++.+ +|+|..+.+| .++++|+||||+||+|++++|+
T Consensus 520 a~~e~la~~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~ 599 (868)
T 2yic_A 520 AFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGF 599 (868)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHH
Confidence 444443 36799999999999999863 6677888899 7766699999999999999999
Q ss_pred HHHHhccC--CeeEEEcccchHHHHH---HHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHH-HHHHH--c
Q 017487 100 GVGAAYYG--LKPVVEFMTFNFSMQA---IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWY--A 171 (370)
Q Consensus 100 A~GlA~~G--~rp~~~t~~~~f~~ra---~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~-~~a~~--~ 171 (370)
|+|+|+.| .+|+++.++++|++++ +||++++.. ++|+ +++|||++.+.|.. ++|++||+. +++++ +
T Consensus 600 a~G~A~~G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~---~k~~--~~~~vvi~~p~G~~-G~Gp~Hs~~~~E~~l~l~ 673 (868)
T 2yic_A 600 EYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGE---AKWG--QLSDVVLLLPHGHE-GQGPDHTSGRIERFLQLW 673 (868)
T ss_dssp HHHHHHHCTTSEEEEECSSGGGGGGGHHHHHHTTTTHH---HHHC--CCCCCEEEEECCCS-SSCTTSSCCCHHHHHHHC
T ss_pred HHHHHccCCCCceEEEEehHHHHhhHHHHHHHHHHHHH---HHhC--CCCCEEEEecCCCC-CCChhhcCCcHHHHHhcC
Confidence 99999999 5678888889999888 999988763 2232 48899999986654 599999876 56666 9
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHhCC--CCEEEEecccccCCCCCCcc--cccCCCcccccCceEE---eeeCCcE--E
Q 017487 172 SVPGLKVLSPYSSEDARGLLKAAIRDP--DPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKI---EREGKDV--T 242 (370)
Q Consensus 172 ~iP~~~V~~P~d~~e~~~~l~~a~~~~--~Pv~i~~~~~l~~~~~~~~~--~~~~~~~~~~~Gk~~v---l~~g~dv--~ 242 (370)
++|||+|++|+|+.|++.++++++..+ +|+||++||.+|+.+.+... ++.+..+..++|++.+ +++|+|+ +
T Consensus 674 ~~pnm~V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~ 753 (868)
T 2yic_A 674 AEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRL 753 (868)
T ss_dssp CTTSCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEE
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEE
Confidence 999999999999999999999988764 99999999999886432211 1111234347898887 7889999 9
Q ss_pred EEEechhHHHHHHHHHHHHhcC-CceeEEEeccccCCCHHHHHHHHhcCCe---EEEEecCCCCCChHHHHHHHHHhhcc
Q 017487 243 ITAFSKIVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNR---LVTVEEGFPQHGVGAEICASVIEESF 318 (370)
Q Consensus 243 Iia~G~~~~~al~Aa~~L~~~G-i~v~Vi~~~~l~P~d~~~i~~~~~~~~~---vvvvEe~~~~GGlg~~i~~~l~~~~~ 318 (370)
|||+|.+ ..++++++ +++| ++++|||+++|+|||.++|.++++++++ ||++||+..+||+++.|+..+.+. +
T Consensus 754 Ii~~G~~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~g~~v~~~l~e~-~ 829 (868)
T 2yic_A 754 LLTSGKI-YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-L 829 (868)
T ss_dssp EEECSTH-HHHHHHHH--HHHTCTTEEEEEECEEESCCHHHHHHHHHTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-C
T ss_pred EEEecHH-HHHHHHHH--HhCCCCCEEEEEeeecCCCCHHHHHHHHHhcCCCceEEEEEeCCCCCCcHHHHHHHHHHH-h
Confidence 9999998 66666665 6679 9999999999999999999999999987 899999999999999999999873 2
Q ss_pred CCCCCCEEEEecCCCCCCC
Q 017487 319 GYLDAPVERIAGADVPMPY 337 (370)
Q Consensus 319 ~~l~~~~~~ig~~d~~~~~ 337 (370)
..++.|+.++|.+|.+.|.
T Consensus 830 ~~l~~~v~~vg~~d~~~p~ 848 (868)
T 2yic_A 830 PDHFTGLKRISRRAMSAPS 848 (868)
T ss_dssp HHHHTTCEEEEECCCSSSS
T ss_pred hhcCCCeEEeccCCcCCCC
Confidence 2234689999999998874
No 22
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.4e-44 Score=389.66 Aligned_cols=282 Identities=18% Similarity=0.205 Sum_probs=235.3
Q ss_pred HHHHHHhcCCCeEEecCCCCCC--------------CCccccchhH------HHHhCCCcEeechhhHHHHHHHHHHHhc
Q 017487 46 ALDEEMSADPKVFLMGEEVGEY--------------QGAYKISKGL------LEKYGPERVLDTPITEAGFTGIGVGAAY 105 (370)
Q Consensus 46 ~L~~l~~~~~~ivvi~~Dl~~~--------------~g~~~~~~~~------~~~~~p~r~~~~GIaE~~~v~~A~GlA~ 105 (370)
+..++++++++|+++++|++.. +|+|..+.+| .++++|+||||+||+|++++|+|+|+|+
T Consensus 771 a~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~ 850 (1113)
T 2xt6_A 771 ALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSV 850 (1113)
T ss_dssp HHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHh
Confidence 3445699999999999999852 5667778899 7766699999999999999999999999
Q ss_pred cC--CeeEEEcccchHHHHH---HHHHHHHhhhccccCCCCcccCEEEEeCCCCCCCCCCcchHH-HHHHH--ccCCCcE
Q 017487 106 YG--LKPVVEFMTFNFSMQA---IDHIINSAAKSNYMSSGQISVPIVFRGPNGAAAGVGAQHSHC-YAAWY--ASVPGLK 177 (370)
Q Consensus 106 ~G--~rp~~~t~~~~f~~ra---~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~~~G~tHs~~-~~a~~--~~iP~~~ 177 (370)
.| .+|+++.++++|++++ +||++++.. ++|+ +++|||++.+.|.. |+|++||+. +++++ +++|||+
T Consensus 851 ~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~---~k~~--~~~~vv~~lp~G~~-G~G~~Hs~~~~E~~l~l~~~pnm~ 924 (1113)
T 2xt6_A 851 GNPDAMVLWEAQFGDFVNGAQSIIDEFISSGE---AKWG--QLSDVVLLLPHGHE-GQGPDHTSGRIERFLQLWAEGSMT 924 (1113)
T ss_dssp HCTTSEEEEECSSGGGGGGGHHHHHHTTTTHH---HHHC--CCCCCEEEEECCCS-SSCTTSSCCCHHHHHHHCCTTSCE
T ss_pred cCCCCceEEEEEEHHHHhhhHHHHHHHHHHHH---HHhC--CCCCEEEEeCCCCC-CCChhhhcccHHHHHhcCCCCCcE
Confidence 99 6678898899999887 999998763 2332 48999999986654 599999886 67777 9999999
Q ss_pred EEeeCCHHHHHHHHHHHHhCC--CCEEEEecccccCCCCCCcc--cccCCCcccccCceEE---eeeCCcE--EEEEech
Q 017487 178 VLSPYSSEDARGLLKAAIRDP--DPVVFLENELLYGESFPVSA--EVLDSSFCLPIGKAKI---EREGKDV--TITAFSK 248 (370)
Q Consensus 178 V~~P~d~~e~~~~l~~a~~~~--~Pv~i~~~~~l~~~~~~~~~--~~~~~~~~~~~Gk~~v---l~~g~dv--~Iia~G~ 248 (370)
|++|+|+.|++.+++.++..+ +|++|++||.||+.+.+... ++.+..+..++|++.+ +++|+|+ +|||+|.
T Consensus 925 V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G~ 1004 (1113)
T 2xt6_A 925 IAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGK 1004 (1113)
T ss_dssp EECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECST
T ss_pred EEecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEECH
Confidence 999999999999999988764 99999999999986532211 1111234347898887 7889999 9999999
Q ss_pred hHHHHHHHHHHHHhcC-CceeEEEeccccCCCHHHHHHHHhcCCe---EEEEecCCCCCChHHHHHHHHHhhccCCCCCC
Q 017487 249 IVGLSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNR---LVTVEEGFPQHGVGAEICASVIEESFGYLDAP 324 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~G-i~v~Vi~~~~l~P~d~~~i~~~~~~~~~---vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~ 324 (370)
+ ..++++++ +++| ++++|||+++|+|||.++|.++++++++ +|++||+..+||+++.|+..+.+. +..++.|
T Consensus 1005 ~-~~~l~aa~--~~~g~i~v~VIdl~~l~Pld~~~i~~~~~k~~~~~~vv~veE~~~~gG~gs~v~~~l~e~-~~~l~~~ 1080 (1113)
T 2xt6_A 1005 I-YYELAARK--AKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAWPSFGLTLPEI-LPDHFTG 1080 (1113)
T ss_dssp H-HHHHHHHH--HHHTCTTEEEEEESEEESCCHHHHHHHHTTCTTCCEEEEEEEEETTSTTHHHHHHHHHHH-SHHHHTT
T ss_pred H-HHHHHHHH--HhCCCCCEEEEEeeeecCCCHHHHHHHHHhCCCCceEEEEecCCCCCCcHHHHHHHHHHH-hhhcCCC
Confidence 8 66776666 5679 9999999999999999999999999988 899999999999999999999873 3223468
Q ss_pred EEEEecCCCCCCC
Q 017487 325 VERIAGADVPMPY 337 (370)
Q Consensus 325 ~~~ig~~d~~~~~ 337 (370)
+.++|.+|.+.|.
T Consensus 1081 ~~~vg~~d~~~p~ 1093 (1113)
T 2xt6_A 1081 LKRISRRAMSAPS 1093 (1113)
T ss_dssp CEEEEECCCSSSS
T ss_pred eEEEccCCcCCCC
Confidence 9999999998874
No 23
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=6.2e-42 Score=366.01 Aligned_cols=309 Identities=15% Similarity=0.134 Sum_probs=242.2
Q ss_pred cccccHHHHHHHHHHHHHhcC---CCeEEecCCCCCCCCc------ccc----chhHH-----------HHhCCCcEeec
Q 017487 34 VKQMMVREALNSALDEEMSAD---PKVFLMGEEVGEYQGA------YKI----SKGLL-----------EKYGPERVLDT 89 (370)
Q Consensus 34 ~~~~~~r~a~~~~L~~l~~~~---~~ivvi~~Dl~~~~g~------~~~----~~~~~-----------~~~~p~r~~~~ 89 (370)
++..++|++|+++|.++++++ ++||++++|+....|+ .++ ...|. +.| |+||||+
T Consensus 489 ~~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~-~~R~~d~ 567 (886)
T 2qtc_A 489 SKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDE-KGQILQE 567 (886)
T ss_dssp SSCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBT-TCCBEEC
T ss_pred CCcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcC-CCceeee
Confidence 467899999999999999998 9999999996521121 110 12343 566 9999999
Q ss_pred hhhHHHH-H---HHHHHHhccC--CeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCC--CCCCCCCc
Q 017487 90 PITEAGF-T---GIGVGAAYYG--LKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNG--AAAGVGAQ 161 (370)
Q Consensus 90 GIaE~~~-v---~~A~GlA~~G--~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G--~~~~~G~t 161 (370)
||+|++| + ++|+|+|++| ++||+.+|+.|.++|++||+++++++ ++.++++....+ ..+++|+|
T Consensus 568 GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~--------~~~~v~l~~~~~~~~~g~dG~t 639 (886)
T 2qtc_A 568 GINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQ--------QARGFLIGGTSGRTTLNGEGLQ 639 (886)
T ss_dssp CSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHT--------TCCCEEEEESCSTTTSTTTCTT
T ss_pred ccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHH--------hcCCEEEEEecCcccCCCCCCc
Confidence 9999995 5 6999999999 89999888754489999999999984 567888876533 34679999
Q ss_pred chH-HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC-CCC----EEEEecccccCCCCCCcccccCCC-cccccCceEE
Q 017487 162 HSH-CYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD-PDP----VVFLENELLYGESFPVSAEVLDSS-FCLPIGKAKI 234 (370)
Q Consensus 162 Hs~-~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~-~~P----v~i~~~~~l~~~~~~~~~~~~~~~-~~~~~Gk~~v 234 (370)
|++ .++++++++||++|++|+|+.|+..+++++++. ++| +++++++.. ++... +.++... ..+ +|++++
T Consensus 640 Hq~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~--~~~~~-p~~~~~~~~~~-~gga~v 715 (886)
T 2qtc_A 640 HEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLN--ENYHM-PAMPEGAEEGI-RKGIYK 715 (886)
T ss_dssp TCCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCS--CCBCC-CCCCTTCHHHH-HHTCEE
T ss_pred cCCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc--cccCC-CCCCcchhhhc-cCceEE
Confidence 965 778999999999999999999999999999996 679 999987642 00100 1222221 234 788999
Q ss_pred eeeC----CcEEEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHH-------------------HHHHHhcC
Q 017487 235 EREG----KDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRST-------------------INASVRKT 290 (370)
Q Consensus 235 l~~g----~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~-------------------i~~~~~~~ 290 (370)
+++| .|++||++|+++..|++|++.|+++ ||+++|||++|++|||.+. +.+.+..
T Consensus 716 lr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~sl~pLD~e~i~~~kt~rl~p~~~~~~~~~e~~l~~- 794 (886)
T 2qtc_A 716 LETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMND- 794 (886)
T ss_dssp EEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSCHHHHHHHHHHHHHHHHHCTTSCCCCCHHHHHCCS-
T ss_pred EEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCcCcccchHHHHHhhhcccCccccccHHHHHHhcCC-
Confidence 9987 7999999999999999999999999 9999999999999999985 3444444
Q ss_pred CeEEEEecCCCCCChHHHHHHHHHhhccCCCC-CCEEEEecCCCCCCC--HHHHHHHhCCCHHHHHHHHHHHHhcccccc
Q 017487 291 NRLVTVEEGFPQHGVGAEICASVIEESFGYLD-APVERIAGADVPMPY--AANLERMAVPQVEDIVRAAKRACYRSVPMA 367 (370)
Q Consensus 291 ~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~-~~~~~ig~~d~~~~~--~~~l~~~~gl~~~~I~~~i~~~l~~~~~~~ 367 (370)
+.+|++|++.. |+++.+..++ + .++..+|+ |.|+.+ .++|.+++|+|+++|++++++++.+...+.
T Consensus 795 ~~vVa~ed~~~--g~~~~~~~~~--------~~~~~~~lG~-D~Fg~sg~~~~L~~~~Gld~e~Iv~~a~~~L~~~g~~~ 863 (886)
T 2qtc_A 795 APAVASTDYMK--LFAEQVRTYV--------PADDYRVLGT-DGFGRSDSRENLRHHFEVDASYVVVAALGELAKRGEID 863 (886)
T ss_dssp SCEEEECSSCT--HHHHTTGGGC--------CSSCEEEECC-CSCCCCCCHHHHHHHTTCSHHHHHHHHHHHHHHHTSSC
T ss_pred CCEEEEEeccc--chHHHHHHHc--------CCCCeEEEEe-CCCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHhcCCCC
Confidence 56788887765 5665443332 3 57889999 888764 578999999999999999999997655543
No 24
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=3e-38 Score=332.49 Aligned_cols=305 Identities=10% Similarity=0.076 Sum_probs=238.1
Q ss_pred cccHHHHHHHHHHHHHhcCCC-eEEecCCCCCCCCccccchhHHHH--------hC--C--------CcEeechhhHHHH
Q 017487 36 QMMVREALNSALDEEMSADPK-VFLMGEEVGEYQGAYKISKGLLEK--------YG--P--------ERVLDTPITEAGF 96 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~-ivvi~~Dl~~~~g~~~~~~~~~~~--------~~--p--------~r~~~~GIaE~~~ 96 (370)
+...+.+++++|.++++++|+ ++++++|+..++.+ ..|.+. |. | +|||+ ||+||+|
T Consensus 428 ~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn~t----~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M 502 (845)
T 3ahc_A 428 QVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRL----NATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQC 502 (845)
T ss_dssp EECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTTTC----GGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHH
T ss_pred chhHHHHHHHHHHHHHHhCCCcEEEEecCCCccccH----HHHHhhcccccccccccCCcccccCCCCcEee-eecHHHH
Confidence 445677888999999999999 99999999865553 333333 23 5 89999 9999999
Q ss_pred HHHHHHHhccCCeeEEEcccchHH--HHHHHH----HHHHhhhccccCCCCccc-CEEEEeC-CCC-CCCCCCcchHH--
Q 017487 97 TGIGVGAAYYGLKPVVEFMTFNFS--MQAIDH----IINSAAKSNYMSSGQISV-PIVFRGP-NGA-AAGVGAQHSHC-- 165 (370)
Q Consensus 97 v~~A~GlA~~G~rp~~~t~~~~f~--~ra~dq----i~~~~a~~~~~~~g~~~~-pvv~~~~-~G~-~~~~G~tHs~~-- 165 (370)
++++.|+|+.|..||+.+|++|+. .|+++| ||++++.+.|+. ++ +|.++.. +|. .+.+|+|| |+
T Consensus 503 ~gia~Glal~G~~~f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~----~~~~v~~v~Th~si~~GeDGpTH-Q~~e 577 (845)
T 3ahc_A 503 EGFLEAYLLTGRHGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRK----PISSVNLLVSSHVWRQDHNGFSH-QDPG 577 (845)
T ss_dssp HHHHHHHHHTTCEEEEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSC----CCBCEEEEEESCGGGCTTTCGGG-CCCT
T ss_pred HHHHHHHHhcCCCCceecchhhhchhhhHHHHHHHHHHhhHHhhhhcc----cCCceEEEEeCCceeecCCCCCC-CCcH
Confidence 999999999999999999875554 899999 999855443322 33 4666664 454 46799999 43
Q ss_pred HH--HHHc---cCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEEe-cccccCCCCCCcccccCCCc---ccccCceEEe-
Q 017487 166 YA--AWYA---SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLE-NELLYGESFPVSAEVLDSSF---CLPIGKAKIE- 235 (370)
Q Consensus 166 ~~--a~~~---~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~~-~~~l~~~~~~~~~~~~~~~~---~~~~Gk~~vl- 235 (370)
++ ..++ .+||++|+.|+|++|+..+++.|++..+|++++. +|. +. +.+.+.+. .+..|++.+.
T Consensus 578 ~~d~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~v~sRq----~~---p~~~~~~~a~~~~~~G~~v~~~ 650 (845)
T 3ahc_A 578 VTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQ----PA---PTWVTLDEARAELEAGAAEWKW 650 (845)
T ss_dssp HHHHHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEEECCCS----CE---EECSCHHHHHHHHHHSEEECTT
T ss_pred HHHHHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEEEecCC----CC---CccCCchhhhhhhcCCeEEEEe
Confidence 33 3333 6799999999999999999999999988888775 442 11 22332232 3567877666
Q ss_pred --ee--C--CcEEEEEechh-HHHHHHHHHHHHhcCCceeEEEeccc---cCCCHHHHHHHHhcCCeEEEEecCCC--CC
Q 017487 236 --RE--G--KDVTITAFSKI-VGLSLKAAEILAKEGISAEVINLRSI---RPLDRSTINASVRKTNRLVTVEEGFP--QH 303 (370)
Q Consensus 236 --~~--g--~dv~Iia~G~~-~~~al~Aa~~L~~~Gi~v~Vi~~~~l---~P~d~~~i~~~~~~~~~vvvvEe~~~--~G 303 (370)
++ | .|++||++|+. +.+|++|++.|+++||+++|||+.+| +|.+++.+....++++.|+++|+|.+ .|
T Consensus 651 as~d~~g~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~lf~lqp~~~~~~~ls~~~~~~l~T~e~h~i~~~g 730 (845)
T 3ahc_A 651 ASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADKPVLFAYH 730 (845)
T ss_dssp TCCCSSTTTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECBGGGGSCTTTCTTSCCHHHHHHHHCSSSCEEEEES
T ss_pred ecccccCCCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccCHHHhCcEeecCCcceeeec
Confidence 35 5 89999999966 55599999999999999999999999 67665544334456678899999987 69
Q ss_pred ChHHHHHHHHHhhccCCCCCCEEEEecCCCCCC--CHHHHHHHhCCCHHHHHHHHHHHHh
Q 017487 304 GVGAEICASVIEESFGYLDAPVERIAGADVPMP--YAANLERMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 304 Glg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~--~~~~l~~~~gl~~~~I~~~i~~~l~ 361 (370)
|+++.|++.+.++. ...++.++|.+| ++. .+.+|..++|+|.++|++++++++.
T Consensus 731 GlgsaV~ell~~r~---~~~~l~v~G~~d-~G~tgtp~eLl~~~gld~~~Iv~~a~~~l~ 786 (845)
T 3ahc_A 731 SYAQDVRGLIYDRP---NHDNFHVVGYKE-QGSTTTPFDMVRVNDMDRYALQAAALKLID 786 (845)
T ss_dssp SCHHHHHHHTTTST---TGGGEEEECCCS-CCCSCCHHHHHHTTTCSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhCC---CCceEEEEeccC-CCCCCCHHHHHHHhCcCHHHHHHHHHHHcc
Confidence 99999999998862 134789999998 654 4678899999999999999999886
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.95 E-value=5.6e-29 Score=246.26 Aligned_cols=287 Identities=20% Similarity=0.207 Sum_probs=100.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHH---HhCCCcEeechhhHHHHHHHHHHHhccCCeeEE
Q 017487 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLE---KYGPERVLDTPITEAGFTGIGVGAAYYGLKPVV 112 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~---~~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~ 112 (370)
.++-.+|++.++.. ...+++..-+-.. +..+...|.+ ++ .-+|+.+. +|++++++|.|+|++|.||++
T Consensus 22 ~~~GneAva~~~~~---ag~~~v~~yPgtP----~t~i~~~l~~~~~~~-g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~ 92 (395)
T 1yd7_A 22 FIQGDEAIARAAIL---AGCRFYAGYPITP----ASEIFEAMALYMPLV-DGVVIQME-DEIASIAAAIGASWAGAKAMT 92 (395)
T ss_dssp EEEHHHHHHHHHHH---HTCCEEEECCBTT----TBCHHHHHHHHGGGG-TCEEEECS-CHHHHHHHHHHHHHTTCCEEE
T ss_pred EeEHHHHHHHHHHH---cCCCEEEEEECcc----hHHHHHHHHHhhhhc-CcEEEEeC-CHHHHHHHHHHHHHhCCcEEE
Confidence 45667888877764 3455665544332 1122344444 45 46899988 999999999999999999999
Q ss_pred EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC--CCCCCCCC--cchHHHHHHHccCC--CcEEEeeCCHHH
Q 017487 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN--GAAAGVGA--QHSHCYAAWYASVP--GLKVLSPYSSED 186 (370)
Q Consensus 113 ~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~--G~~~~~G~--tHs~~~~a~~~~iP--~~~V~~P~d~~e 186 (370)
++++++| .+++|||.+. + +.++|+|++... |...+.+. .|++...+++.+.| ++.+++|+|++|
T Consensus 93 ~ts~~G~-~~~~d~l~~a-a--------~~~~P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~qe 162 (395)
T 1yd7_A 93 ATSGPGF-SLMQENIGYA-V--------MTETPVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQE 162 (395)
T ss_dssp EEETTHH-HHHTTTCC-------------CCCCEEEEEEC--------------------------CCCCEEECCCSHHH
T ss_pred EeCchHH-HHHHHHHHHH-H--------hcCCCEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHHH
Confidence 9988655 4589998753 3 378999998743 33323222 34333345667755 999999999999
Q ss_pred HHHHHHHHH----hCCCCEEEEecccccCCCC----CCcccc----------cC---CCccc--cc--------Cc----
Q 017487 187 ARGLLKAAI----RDPDPVVFLENELLYGESF----PVSAEV----------LD---SSFCL--PI--------GK---- 231 (370)
Q Consensus 187 ~~~~l~~a~----~~~~Pv~i~~~~~l~~~~~----~~~~~~----------~~---~~~~~--~~--------Gk---- 231 (370)
+++++.+|+ +.+.||++++++.++.... +....+ +. .+|.. +. |.
T Consensus 163 a~~l~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~~ 242 (395)
T 1yd7_A 163 AFDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYRT 242 (395)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC--------------------------------
T ss_pred HHHHHHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCcee
Confidence 999999999 4579999998753321100 000000 00 00100 00 00
Q ss_pred -----------------------------------------e-EEeeeCCcEEEEEechhHHHHHHHHHHHHhcCCceeE
Q 017487 232 -----------------------------------------A-KIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEV 269 (370)
Q Consensus 232 -----------------------------------------~-~vl~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~V 269 (370)
. .+.++|+|++||+||+++..+++|++.|+++|++++|
T Consensus 243 ~~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~v 322 (395)
T 1yd7_A 243 YVTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAGL 322 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceEE
Confidence 0 1124678999999999999999999999999999999
Q ss_pred EEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCH
Q 017487 270 INLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQV 349 (370)
Q Consensus 270 i~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~ 349 (370)
||+++++|||.+.|.++++++++|+|+||+. ||++++|++.+.+. .++.+++..+ ..-+++
T Consensus 323 i~~r~~~Pld~~~i~~~~~~~~~vvvvEe~~--G~l~~~v~~~~~~~------~~~~~~gk~~-----------g~~~~~ 383 (395)
T 1yd7_A 323 LKIETIWPFDFELIERIAERVDKLYVPEMNL--GQLYHLIKEGANGK------AEVKLISKIG-----------GEVHTP 383 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeCeecCCCHHHHHHHHhcCCEEEEEeCCc--hHHHHHHHHHhcCC------CCeEEEeccC-----------CCcCCH
Confidence 9999999999999999999999999999996 99999999888641 2344444332 124788
Q ss_pred HHHHHHHHHHH
Q 017487 350 EDIVRAAKRAC 360 (370)
Q Consensus 350 ~~I~~~i~~~l 360 (370)
++|.+++++++
T Consensus 384 ~ei~~~i~~~~ 394 (395)
T 1yd7_A 384 MEIFEFIRREF 394 (395)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 99998888765
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.86 E-value=4.1e-20 Score=204.26 Aligned_cols=257 Identities=14% Similarity=0.140 Sum_probs=177.9
Q ss_pred hCCCcEeechhhHHHHHHHHHHHhccCCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCCC
Q 017487 81 YGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAGV 158 (370)
Q Consensus 81 ~~p~r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~~ 158 (370)
|+..+.+....+|.++++++.|+|.+|.|++++|.++.|+ .+.+.+.. ++. .++|+|++. ++|++.+.
T Consensus 51 ~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t~Ts~~Gl~-lm~e~l~~-~ag--------~~~P~Vi~va~R~g~~~gl 120 (1231)
T 2c42_A 51 FGQTLTIREMQSEAGAAGAVHGALAAGALTTTFTASQGLL-LMIPNMYK-ISG--------ELLPGVFHVTARAIAAHAL 120 (1231)
T ss_dssp TSCCCEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHH-HHHHHHHH-HHH--------TTCCCEEEEEECCCCSSSB
T ss_pred cCCceEEEecCChHHHHHHHHHHHHcCChHhhhccHHHHH-HHHHHHHH-HhC--------CCCCEEEEECCCCccCCCC
Confidence 5566899999999999999999999999999999775554 44576643 331 478999987 34554442
Q ss_pred --CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH----hCCCCEEEEecccccCC---CCCCcc--c---c----
Q 017487 159 --GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI----RDPDPVVFLENELLYGE---SFPVSA--E---V---- 220 (370)
Q Consensus 159 --G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~----~~~~Pv~i~~~~~l~~~---~~~~~~--~---~---- 220 (370)
.+.|++ .+..+.+|+.|++|+|++|+++++..|+ +++.||+++.+..++.. ++.+.. . +
T Consensus 121 si~~~hsd---~~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~~~ 197 (1231)
T 2c42_A 121 SIFGDHQD---IYAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVNQK 197 (1231)
T ss_dssp CCSCCSHH---HHTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSCHH
T ss_pred cCCCchhh---HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcChh
Confidence 344533 3567889999999999999999999985 46899999987543221 000000 0 0
Q ss_pred ---------cCCCccccc--------------------------------------Cc----eE-EeeeCCcEEEEEech
Q 017487 221 ---------LDSSFCLPI--------------------------------------GK----AK-IEREGKDVTITAFSK 248 (370)
Q Consensus 221 ---------~~~~~~~~~--------------------------------------Gk----~~-vl~~g~dv~Iia~G~ 248 (370)
.+++...+. |+ .+ .-.+++|++||+||+
T Consensus 198 ~~~~~~~~~~~p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~Gs 277 (1231)
T 2c42_A 198 ALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSMGS 277 (1231)
T ss_dssp HHHHHHHHSCCTTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEECST
T ss_pred hhhhccccccCCCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEeCH
Confidence 000000111 11 12 124679999999999
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHH-hcCCeEEEEecCCCCC----ChHHHHHHHHHhhccCCCCC
Q 017487 249 IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASV-RKTNRLVTVEEGFPQH----GVGAEICASVIEESFGYLDA 323 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~-~~~~~vvvvEe~~~~G----Glg~~i~~~l~~~~~~~l~~ 323 (370)
++..+++|++.|+++|++++||++++++|||.+.|.+++ +++++|+|+|+....| .+..++...+.... ...
T Consensus 278 ~~~~~~eAv~~L~~~G~kvgvl~lr~~rPfp~~~i~~~l~~~~k~i~VvE~~~~~g~~G~pl~~dv~~al~~~~---~~~ 354 (1231)
T 2c42_A 278 SCETIEEVINHLAAKGEKIGLIKVRLYRPFVSEAFFAALPASAKVITVLDRTKEPGAPGDPLYLDVCSAFVERG---EAM 354 (1231)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEESEEESCCHHHHHHTSCTTCCEEEEEESSCCTTCSSCHHHHHHHHHHHHHC---SCC
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEEEeCCCCHHHHHHHHHhcCCEEEEEECCCCCCCCcccHHHHHHHHHhhcc---CCC
Confidence 999999999999999999999999999999999999998 6779999999984332 24456666665421 011
Q ss_pred CEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhc
Q 017487 324 PVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 362 (370)
Q Consensus 324 ~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~~ 362 (370)
++...+..... ...++++.|.+.+.++.+.
T Consensus 355 ~~~~~gr~gl~---------g~~~tp~~i~~~~~~l~~~ 384 (1231)
T 2c42_A 355 PKILAGRYGLG---------SKEFSPAMVKSVYDNMSGA 384 (1231)
T ss_dssp CEEEEEECCGG---------GCCCCHHHHHHHHHHHHTT
T ss_pred CeEEEEEECCC---------CCCCCHHHHHHHHHHhhcC
Confidence 33332321100 0137899999888887653
No 27
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=99.70 E-value=5.1e-17 Score=133.87 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=87.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhh
Q 017487 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE 316 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~ 316 (370)
+|+|++||+||+++..|++|++.|+++|++++|+++++++|||.+.|.++++++++|+|+|++. .||+++.|...+..
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~~P~d~~~l~~~~~~~~~vvvvE~~~-~G~l~~~i~~~~~~- 89 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMFSPFPTEFVKNVLSSANLVIDVESNY-TAQAAQMIKLYTGI- 89 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSSCSCCHHHHHHHHTTCSCCCCCCCCC-CCCHHHHHHHHHCC-
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeEecCCHHHHHHHHcCCCEEEEEECCC-CCcHHHHHHHHcCC-
Confidence 6789999999999999999999999999999999999999999999999999999999999975 69999988765421
Q ss_pred ccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh
Q 017487 317 SFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 361 (370)
Q Consensus 317 ~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~ 361 (370)
.++..+...+ ..-+++++|.+.++++++
T Consensus 90 ------~~~~~i~~~~-----------G~~~~~~ei~~~i~~~~~ 117 (118)
T 3ju3_A 90 ------DIKNKILKYN-----------GRHMTEDEILKSAKEILN 117 (118)
T ss_dssp ------CCCCCCCCBT-----------TBCCCHHHHHHHHHHHHH
T ss_pred ------CceeEEeeeC-----------CeeCCHHHHHHHHHHHhh
Confidence 1111111110 124899999999999873
No 28
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=94.42 E-value=0.83 Score=46.32 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=85.8
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEE
Q 017487 35 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVE 113 (370)
Q Consensus 35 ~~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~ 113 (370)
.+++..+++.+.|.+..- +.|+..+.- ....+.+.+.+ . +.+.+=....|+++..+|.|.|+. |...++.
T Consensus 19 ~~~~~a~~lv~~L~~~GV---~~vfg~PG~----~~~~l~~al~~-~-~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~ 89 (565)
T 2nxw_A 19 SHMKLAEALLRALKDRGA---QAMFGIPGD----FALPFFKVAEE-T-QILPLHTLSHEPAVGFAADAAARYSSTLGVAA 89 (565)
T ss_dssp CCCBHHHHHHHHHHHTTC---CCEEECCCG----GGHHHHHHHHH-H-CSSCEEECSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCcCHHHHHHHHHHHcCC---CEEEECCCc----chHHHHHHHHh-C-CCcEEEecCcHHHHHHHHHHHHHHhCCCeEEE
Confidence 346777888777765432 223333211 12233444443 2 444445567999999999999998 5433333
Q ss_pred cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCC--cch-HH---HHHHHccCCCcEEEeeCCHH
Q 017487 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGA--QHS-HC---YAAWYASVPGLKVLSPYSSE 185 (370)
Q Consensus 114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~--tHs-~~---~~a~~~~iP~~~V~~P~d~~ 185 (370)
+.+......++.-+.+. + ..++||+++... .. ..+.+. +|+ |. ...+++.+-.+.. ...+++
T Consensus 90 ~TsGpG~~N~~~gv~~A--~-------~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~-~v~~~~ 159 (565)
T 2nxw_A 90 VTYGAGAFNMVNAVAGA--Y-------AEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQA-RLDDPA 159 (565)
T ss_dssp ECTTHHHHTTHHHHHHH--H-------HTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEE-ECCCTT
T ss_pred ECCCCCHHHHHHHHHHH--H-------hhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEE-EeCCHH
Confidence 33334455555655432 2 268999988621 11 112222 342 22 2478888766543 344555
Q ss_pred HHHHHHHHHH----hCCCCEEEEecccccC
Q 017487 186 DARGLLKAAI----RDPDPVVFLENELLYG 211 (370)
Q Consensus 186 e~~~~l~~a~----~~~~Pv~i~~~~~l~~ 211 (370)
++...++.|+ ..++||+|-.|+....
T Consensus 160 ~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~ 189 (565)
T 2nxw_A 160 KAPAEIARVLGAARAQSRPVYLEIPRNMVN 189 (565)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEEEGGGTT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECChhhhc
Confidence 5555555444 3479999988865433
No 29
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=94.36 E-value=0.46 Score=48.15 Aligned_cols=152 Identities=18% Similarity=0.061 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcc
Q 017487 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM 115 (370)
Q Consensus 37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~ 115 (370)
++..+++.+.|.+..- +.++.+-.+ ....+.+.+.+. +=|++.+ ..|++++.+|.|.|+. |...++.+.
T Consensus 4 ~~~a~~l~~~L~~~GV--~~vfg~PG~-----~~~~l~~al~~~--~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~T 73 (563)
T 2uz1_A 4 ITGGELVVRTLIKAGV--EHLFGLHGA-----HIDTIFQACLDH--DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVT 73 (563)
T ss_dssp EEHHHHHHHHHHHHTC--CCEEECCCG-----GGHHHHHHHHHH--TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred cCHHHHHHHHHHHCCC--CEEEECCCC-----chHHHHHHHHhc--CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 4566777777765432 233333211 112333444432 3467765 6999999999999998 543333333
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCCcch-HHHHHHHccCCCcEEEeeCCHHHHHHHHH
Q 017487 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGAQHS-HCYAAWYASVPGLKVLSPYSSEDARGLLK 192 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~tHs-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~ 192 (370)
+......++.-+.+ |+ ..++||+++... .. .-+.|..|. .+..++++.+-.+ .....+++++...++
T Consensus 74 sGpG~~N~~~~l~~--A~-------~~~~Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~ 143 (563)
T 2uz1_A 74 AGGGFTNAVTPIAN--AW-------LDRTPVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVM 143 (563)
T ss_dssp TTHHHHTTHHHHHH--HH-------HHTCCEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHH
T ss_pred cCccHHHHHHHHHH--HH-------hcCCCEEEEeCCCCcccCCchhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHH
Confidence 33455556666654 22 268999988621 11 112233333 2235899988765 556677888877777
Q ss_pred HHHh-----CCCCEEEEeccc
Q 017487 193 AAIR-----DPDPVVFLENEL 208 (370)
Q Consensus 193 ~a~~-----~~~Pv~i~~~~~ 208 (370)
.|++ .++||+|-.|..
T Consensus 144 ~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 144 QAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHhcCCCCceEEEEeCHH
Confidence 7775 259999987765
No 30
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=94.25 E-value=0.098 Score=53.59 Aligned_cols=113 Identities=14% Similarity=-0.014 Sum_probs=73.1
Q ss_pred cEeechhhHHHHHHHHHHHhccCCee-EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCCc
Q 017487 85 RVLDTPITEAGFTGIGVGAAYYGLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGAQ 161 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~rp-~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~t 161 (370)
|++- ...|++++.+|.|.|+...|| ++.+.+......++.-|.+ |+ ..++||+++... .. .-+.+..
T Consensus 45 ~~i~-~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~~--A~-------~~~vPll~Itg~~p~~~~g~~~~ 114 (590)
T 1v5e_A 45 KFLQ-VKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLYD--AA-------MDNIPVVAILGSRPQRELNMDAF 114 (590)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHHH--HH-------HHTCCEEEEEEECCGGGTTTTCT
T ss_pred eEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHHH--HH-------hcCCCEEEEcCCCCcccCCCCcc
Confidence 4444 579999999999999995443 3333333455556666654 22 268999988621 11 1122222
Q ss_pred chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017487 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
+..+...+++.+-.+ .+.+.+++++...++.|++ . ++||+| .|...
T Consensus 115 Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 115 QELNQNPMYDHIAVY-NRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp TCCCCHHHHHTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred cccCHHHHHHhhccE-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 211225789988766 6777888888888887775 3 489999 88654
No 31
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=93.56 E-value=0.34 Score=49.29 Aligned_cols=114 Identities=11% Similarity=-0.042 Sum_probs=73.8
Q ss_pred CcEeechhhHHHHHHHHHHHhccCCee-E-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCC-
Q 017487 84 ERVLDTPITEAGFTGIGVGAAYYGLKP-V-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGV- 158 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~G~rp-~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~- 158 (370)
=|++. ...|+++..+|-|.|+...|| + +.|.. .....++.-+.+.. ..++||+++...-. .-+.
T Consensus 49 i~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsG-pG~~N~~~~v~~A~---------~~~~Pll~itg~~~~~~~~~~ 117 (573)
T 2iht_A 49 IDFVL-TRHEFTAGVAADVLARITGRPQACWATLG-PGMTNLSTGIATSV---------LDRSPVIALAAQSESHDIFPN 117 (573)
T ss_dssp CEEEE-CSSHHHHHHHHHHHHHHHCSCEEEEECTT-HHHHHHHHHHHHHH---------HHTCCEEEEEEESCGGGCCTT
T ss_pred CeEEe-eCCHHHHHHHHHHHHHHHCCCEEEEEccC-chHHHHHHHHHHHH---------hhCCCEEEEcccCcccccCCc
Confidence 35665 469999999999999984444 3 34444 45556667665432 26899998862211 1123
Q ss_pred CCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017487 159 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 159 G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
+..|..+..++++.+-.+ .....+++++...++.|++ . ++||+|-.|...
T Consensus 118 ~~~Q~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 118 DTHQCLDSVAIVAPMSKY-AVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDL 172 (573)
T ss_dssp TSTTCCCHHHHHGGGSSE-EEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred CccccCCHHHHHHhHhhE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 334433335899988765 4555677777777777775 2 589999877654
No 32
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.47 E-value=0.23 Score=50.46 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcc
Q 017487 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM 115 (370)
Q Consensus 37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~ 115 (370)
++..+++.+.|.+..- +.|+..+.- ....+.+.+.+ - .=|++.+ ..|+++..+|.|.|+. |...++.+.
T Consensus 11 ~~~a~~l~~~L~~~GV---~~vfg~PG~----~~~~l~~al~~-~-~i~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~T 80 (566)
T 1ozh_A 11 AHGADLVVSQLEAQGV---RQVFGIPGA----KIDKVFDSLLD-S-SIRIIPV-RHEANAAFMAAAVGRITGKAGVALVT 80 (566)
T ss_dssp SCHHHHHHHHHHHHTC---CEEEEECCT----TTHHHHHHGGG-S-SSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEEC
T ss_pred CcHHHHHHHHHHHCCC---CEEEEcCCC----chHHHHHHHHh-C-CCcEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 4556777777765432 333333211 11222333332 1 2366665 7999999999999997 543343333
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHH
Q 017487 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKA 193 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~ 193 (370)
+......++.-+.+. + ..++||+++...-.. -+.+..|..+..++++.+..+ .+...+++++...++.
T Consensus 81 sGpG~~N~~~~l~~A--~-------~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~ 150 (566)
T 1ozh_A 81 SGPGCSNLITGMATA--N-------SEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKY-AIEVTAPDALAEVVSN 150 (566)
T ss_dssp STHHHHTTHHHHHHH--H-------HHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSE-EEECCSGGGHHHHHHH
T ss_pred cChHHHHHHHHHHHH--H-------hcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhhe-EEEcCCHHHHHHHHHH
Confidence 334455556665432 2 268999988622111 122333322335899988765 4556677777777777
Q ss_pred HHh----C-CCCEEEEecccc
Q 017487 194 AIR----D-PDPVVFLENELL 209 (370)
Q Consensus 194 a~~----~-~~Pv~i~~~~~l 209 (370)
|++ . ++||+|-.|..+
T Consensus 151 A~~~A~~~r~GPV~l~iP~dv 171 (566)
T 1ozh_A 151 AFRAAEQGRPGSAFVSLPQDV 171 (566)
T ss_dssp HHHHHHSSSCCEEEEEEEHHH
T ss_pred HHHHHhcCCCCeEEEEeChhh
Confidence 664 3 599999877553
No 33
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.11 E-value=0.28 Score=50.11 Aligned_cols=113 Identities=18% Similarity=0.066 Sum_probs=73.3
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCCCCc
Q 017487 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVGAQ 161 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~G~t 161 (370)
|++. ...|++++.+|.|.|+. |...++.+-+......++.-+.+. + ..++||+++...-. .-+.|..
T Consensus 52 ~~i~-~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv~~A--~-------~~~vPll~itg~~~~~~~g~~~~ 121 (590)
T 1ybh_A 52 RNVL-PRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADA--L-------LDSVPLVAITGQVPRRMIGTDAF 121 (590)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHH--H-------HHTCCEEEEEEECCGGGTTTTCT
T ss_pred cEEe-eCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHHHHH--H-------hhCCCEEEEeCcCCccccCCCcc
Confidence 4554 45999999999999998 544333333334455556665432 2 26899998852111 1123333
Q ss_pred chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccc
Q 017487 162 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL 208 (370)
Q Consensus 162 Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~ 208 (370)
+..+..++++.+-.+ .+...+++++..+++.|++ .++||+|-.|..
T Consensus 122 Q~~d~~~~~~~~~k~-~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 122 QETPIVEVTRSITKH-NYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp TCCCHHHHHGGGSSE-EEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cccCHHHHHHHHhCe-EEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 322335899988776 5666788889888888886 258999987754
No 34
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=92.39 E-value=1 Score=46.09 Aligned_cols=151 Identities=14% Similarity=0.014 Sum_probs=88.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCC-CcEeechhhHHHHHHHHHHHhcc-CCeeEE--
Q 017487 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGP-ERVLDTPITEAGFTGIGVGAAYY-GLKPVV-- 112 (370)
Q Consensus 37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p-~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-- 112 (370)
++..+++.+.|.+. .=+.++..+.- ....+.+.+.+ . + =|++ ....|++++.+|.|.|+. |.+|.+
T Consensus 27 ~~~a~~l~~~L~~~---GV~~vfg~PG~----~~~~l~~al~~-~-~~i~~i-~~~~E~~Aa~~A~GyAr~tgg~~~v~~ 96 (616)
T 2pan_A 27 MRAVDAAMYVLEKE---GITTAFGVPGA----AINPFYSAMRK-H-GGIRHI-LARHVEGASHMAEGYTRATAGNIGVCL 96 (616)
T ss_dssp EEHHHHHHHHHHHT---TCCEEEECCCG----GGHHHHHHHHH-H-CCCEEE-ECSSHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred CcHHHHHHHHHHHC---CCCEEEECCCC----ccHHHHHHHHh-c-CCCcEE-eeCCHHHHHHHHHHHHHhcCCCceEEE
Confidence 34556666665432 23444443311 12233344433 2 3 2455 457999999999999998 556543
Q ss_pred EcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-C-CCCCCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHH
Q 017487 113 EFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-G-AAAGVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGL 190 (370)
Q Consensus 113 ~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G-~~~~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~ 190 (370)
.|.. .....++.-|.+.. ..++||+++... . ...+.|..+..+...+++.+-.+.. ...+++++..+
T Consensus 97 ~TsG-pG~~N~~~~l~~A~---------~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~ 165 (616)
T 2pan_A 97 GTSG-PAGTDMITALYSAS---------ADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAV-TVREAALVPRV 165 (616)
T ss_dssp ECST-HHHHTSHHHHHHHH---------HTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEE-ECCSGGGHHHH
T ss_pred eCCC-chHHHHHHHHHHHH---------hcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhc-ccCCHHHHHHH
Confidence 4544 44445566665422 268999988621 1 1112233232222578888876644 55667888888
Q ss_pred HHHHHhC-----CCCEEEEeccc
Q 017487 191 LKAAIRD-----PDPVVFLENEL 208 (370)
Q Consensus 191 l~~a~~~-----~~Pv~i~~~~~ 208 (370)
++.|++. ++||+|-.|..
T Consensus 166 l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 166 LQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp HHHHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHHHHhcCCCceEEEEcchh
Confidence 8888762 58999977654
No 35
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=92.27 E-value=0.45 Score=48.11 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=70.1
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeE-EEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCCCC
Q 017487 85 RVLDTPITEAGFTGIGVGAAYY-GLKPV-VEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~-~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~G~ 160 (370)
|++.+ ..|+++.-+|-|.|+. |...+ +.|.. .....++.-|.+. + ..++||+++...-. .-+.|.
T Consensus 43 ~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~TsG-pG~~N~~~gi~~A--~-------~~~vPvl~itg~~~~~~~~~~~ 111 (549)
T 3eya_A 43 EWMST-RHEEVAAFAAGAEAQLSGELAVCAGSCG-PGNLHLINGLFDC--H-------RNHVPVLAIAAHIPSSEIGSGY 111 (549)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTT-HHHHTTHHHHHHH--H-------HTTCCEEEEEEESCGGGTTSCC
T ss_pred eEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCCC-CcHhhhHHHHHHH--H-------hhCCCEEEEeCCCchhhcCCCC
Confidence 56654 5999999999999998 54333 33544 4445555665542 2 26899998862211 112333
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEeccc
Q 017487 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENEL 208 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~ 208 (370)
.|..+...+++.+-.+ .....+++++...++.|++ .++||+|-.|..
T Consensus 112 ~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 112 FQETHPQELFRECSHY-CELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp TTCCCHHHHTSTTCSE-EEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred CCccCHHHHHhhhhhe-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 3323335788888765 4445566666666666654 579999987754
No 36
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=92.23 E-value=2.1 Score=43.37 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=70.7
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCC--
Q 017487 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVG-- 159 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G-- 159 (370)
|++.+ ..|++++.+|.|.|+. |.-.++.|..| ....++.-+.+ |+ ..++||+++... .. ..+.+
T Consensus 43 ~~i~~-~~E~~Aa~~A~Gyar~tg~~v~~~TsGp-G~~N~~~gia~--A~-------~~~vPll~itg~~~~~~~~~~~~ 111 (568)
T 2wvg_A 43 EQVYC-CNELNCGFSAEGYARAKGAAAAVVTYSV-GALSAFDAIGG--AY-------AENLPVILISGAPNNNDHAAGHV 111 (568)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHSCEEEEECTTT-THHHHHHHHHH--HH-------HTTCCEEEEEEECCGGGTTTTCB
T ss_pred eEecc-CcHHHHHHHHHHHHHhhCCeEEEEeCCC-CHHHHHHHHHH--Hh-------hhCCCEEEEeCCCChhHhccCcc
Confidence 66665 7999999999999977 83334455444 44456666654 23 268999988621 11 11112
Q ss_pred Ccch----H--HHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEecccc
Q 017487 160 AQHS----H--CYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLENELL 209 (370)
Q Consensus 160 ~tHs----~--~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~~~~l 209 (370)
.+|. + +...+++.+-.+ .+...+++++...++.|++ .++||+|-.|...
T Consensus 112 ~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 112 LHHALGKTDYHYQLEMAKNITAA-AEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp CTTSCSSSCCCHHHHHHTTSCSC-EEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred eeeeccccchHHHHHHHHhhEeE-EEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 1231 1 225899988766 4555666666666666554 4699999877653
No 37
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=91.76 E-value=0.56 Score=48.86 Aligned_cols=112 Identities=17% Similarity=0.099 Sum_probs=72.4
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCe-eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCCCC
Q 017487 85 RVLDTPITEAGFTGIGVGAAYY-GLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~G~ 160 (370)
|++. ...|+++..+|-|.|+. |.. .++.|.. .....++.-|.+.. ..++||+++...-. .-+.+.
T Consensus 122 ~~v~-~~hE~~Aa~aAdGyAr~tGkpgvv~~TsG-pG~~N~~~gia~A~---------~d~vPllvItG~~~~~~~g~~a 190 (677)
T 1t9b_A 122 NFVL-PKHEQGAGHMAEGYARASGKPGVVLVTSG-PGATNVVTPMADAF---------ADGIPMVVFTGQVPTSAIGTDA 190 (677)
T ss_dssp EEEC-CSSHHHHHHHHHHHHHHHSSCEEEEECST-HHHHTTHHHHHHHH---------HHTCCEEEEEEECCTTTTTSCC
T ss_pred eEEE-eCChHHHHHHHHHHHHHHCCCEEEEECCC-hHHHHHHHHHHHHH---------HcCCCEEEEeCCCChhhcCCCC
Confidence 5554 47999999999999998 543 3344444 45555666665432 26899998852111 112233
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh-----CCCCEEEEeccc
Q 017487 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR-----DPDPVVFLENEL 208 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~-----~~~Pv~i~~~~~ 208 (370)
.+..+..++++.+-.+. +...+++++...++.|++ .++||+|-.|..
T Consensus 191 ~Q~~Dq~~i~~~~tk~~-~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~D 242 (677)
T 1t9b_A 191 FQEADVVGISRSCTKWN-VMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKD 242 (677)
T ss_dssp TTCCCHHHHTGGGSSEE-EECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred ccccCHHHHhhhheeEE-EEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCHH
Confidence 33223357888877664 445678888888888876 368999987754
No 38
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=91.38 E-value=2.1 Score=43.35 Aligned_cols=153 Identities=15% Similarity=0.061 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcc
Q 017487 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM 115 (370)
Q Consensus 37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~ 115 (370)
++..+++.+.|.+.. =+.|+..+.- ....+.+.+.+.- .=|++. ...|++++.+|.|.|+. | ..++.+.
T Consensus 3 ~~~a~~l~~~L~~~G---V~~vfg~PG~----~~~~l~~al~~~~-~i~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~T 72 (566)
T 2vbi_A 3 YTVGMYLAERLVQIG---LKHHFAVAGD----YNLVLLDQLLLNK-DMKQIY-CCNELNCGFSAEGYARSNG-AAAAVVT 72 (566)
T ss_dssp CBHHHHHHHHHHHHT---CSEEEECCCT----TTHHHHHHHHTCT-TSEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEC
T ss_pred cCHHHHHHHHHHHcC---CCEEEeCCCC----ccHHHHHHHhcCC-CCeEEe-eCcHHHHHHHHHHHHhhcC-CeEEEEe
Confidence 455666666665543 2334443311 1122233333221 135555 56999999999999987 8 4444333
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCC-CC-CCCCCC--cch----H-HH-HHHHccCCCcEEEeeCCHH
Q 017487 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPN-GA-AAGVGA--QHS----H-CY-AAWYASVPGLKVLSPYSSE 185 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~-G~-~~~~G~--tHs----~-~~-~a~~~~iP~~~V~~P~d~~ 185 (370)
+......++.-|.+ |+ ..++||+++... .. ..+.+. +|. + .+ ..+++.+-.+ .+.+.+++
T Consensus 73 sGpG~~N~~~gia~--A~-------~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~-~~~v~~~~ 142 (566)
T 2vbi_A 73 FSVGAISAMNALGG--AY-------AENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCA-AESITDAH 142 (566)
T ss_dssp TTTTHHHHHHHHHH--HH-------HTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSE-EEEECSSS
T ss_pred CCCCHHHHHHHHHH--HH-------hhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeE-EEEeCCHH
Confidence 33444556666654 22 268999988621 11 112221 231 1 13 5888887655 34445555
Q ss_pred HHHHHHHHHH----hCCCCEEEEecccc
Q 017487 186 DARGLLKAAI----RDPDPVVFLENELL 209 (370)
Q Consensus 186 e~~~~l~~a~----~~~~Pv~i~~~~~l 209 (370)
++...++.|+ ..++||+|-.|...
T Consensus 143 ~~~~~l~~A~~~a~~~~GPV~l~iP~d~ 170 (566)
T 2vbi_A 143 SAPAKIDHVIRTALRERKPAYLDIACNI 170 (566)
T ss_dssp SHHHHHHHHHHHHHHHTCCEEEEEETTT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 5555555554 34699999877543
No 39
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=91.25 E-value=0.29 Score=49.25 Aligned_cols=114 Identities=18% Similarity=0.126 Sum_probs=70.4
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCCc
Q 017487 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQ 161 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~t 161 (370)
|++. ...|++++.+|.|.|+. |...++.+.+......++.-+.+ |+ ..++||+++...-.. -+.+..
T Consensus 40 ~~i~-~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~~--A~-------~~~~Pll~itg~~~~~~~~~~~~ 109 (528)
T 1q6z_A 40 RYIL-ALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSN--AW-------NSHSPLIVTAGQQTRAMIGVEAL 109 (528)
T ss_dssp EEEE-CSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHH--HH-------HTTCCEEEEEEECCHHHHTTTCT
T ss_pred cEEE-ECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHHH--Hh-------hcCCCEEEEeCCCcccccCCCcc
Confidence 4554 56999999999999998 65555534343445566676654 22 268999988521111 122222
Q ss_pred ch-HHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEecccc
Q 017487 162 HS-HCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENELL 209 (370)
Q Consensus 162 Hs-~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~l 209 (370)
+. .+..++++.+-.+ ...+.+++++...+..|++ . ++||+|-.|...
T Consensus 110 q~~~d~~~~~~~~~k~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 110 LTNVDAANLPRPLVKW-SYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp TCCTTGGGSSTTSCSC-EECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred cccccHHHHHHHhhHh-hhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 21 1224788887766 4555666666666666664 3 589999877653
No 40
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=89.76 E-value=0.52 Score=48.10 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=70.0
Q ss_pred cEeechhhHHHHHHHHHHHhccCCe--eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCC--CCCCC-
Q 017487 85 RVLDTPITEAGFTGIGVGAAYYGLK--PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGA--AAGVG- 159 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~G~r--p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~--~~~~G- 159 (370)
|++.+ ..|+++..+|-|.|+..-| .++.|..| ....++.-|.+. + ..++||+++...-. .-+.+
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGp-G~~N~~~gv~~A--~-------~~~vPll~itg~~~~~~~~~~~ 113 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCV-GNLLLHAAMQEA--R-------TGRIPAVHIGLNSDGRLAGRSE 113 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGG-GGGGCHHHHHHH--H-------HTTCCEEEEEEESCGGGTTCTT
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCc-hHHHHHHHHHHH--H-------hcCCCEEEEecCCcccccCCCC
Confidence 56655 7999999999999998433 34445444 444455655432 2 26899998852111 12234
Q ss_pred CcchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----C-CCCEEEEeccc
Q 017487 160 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----D-PDPVVFLENEL 208 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~-~~Pv~i~~~~~ 208 (370)
..|..+..+ ++.+-.+ .....+++++...++.|++ . ++||+|-.|..
T Consensus 114 ~~Q~~d~~~-~~~~tk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 114 AAQQVPWQS-FTPIARS-TQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp CSSCCCGGG-GTTTSSE-EEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred cccccChhh-ccccEEE-EeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 344322247 8887765 4555677777777777765 2 48999987754
No 41
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=89.16 E-value=3.4 Score=41.64 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=70.2
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCee-EEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCC
Q 017487 85 RVLDTPITEAGFTGIGVGAAYY-GLKP-VVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGA 160 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp-~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~ 160 (370)
|++- ...|+++.-+|-|.|+. |... ++.|.. .....++.-|.+. + ..++||+++...-.. -+.|.
T Consensus 48 ~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsG-pG~~N~~~gia~A--~-------~d~vPll~itG~~~~~~~g~~~ 116 (556)
T 3hww_A 48 IHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSG-TAVANLYPALIEA--G-------LTGEKLILLTADRPPELIDCGA 116 (556)
T ss_dssp EEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSS-HHHHTTHHHHHHH--H-------HHCCCEEEEEEECCGGGSSSSC
T ss_pred eEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCC-cHHHhhhHHHHHH--H-------HhCCCeEEEeCCCCHHHhccCC
Confidence 5665 45899999999999987 6433 344544 4555556655432 2 268999988521111 12233
Q ss_pred cchHHHHHHHccCCCcEEEee--CC---HHHHHHHHHHHHhC--CCCEEEEecc
Q 017487 161 QHSHCYAAWYASVPGLKVLSP--YS---SEDARGLLKAAIRD--PDPVVFLENE 207 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P--~d---~~e~~~~l~~a~~~--~~Pv~i~~~~ 207 (370)
.|..+..++++.+-.+....+ .+ ++++..+++.|+.. ++||+|-.|.
T Consensus 117 ~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~ 170 (556)
T 3hww_A 117 NQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPF 170 (556)
T ss_dssp TTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEEC
T ss_pred CccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCc
Confidence 332222478887776655443 32 35688899999864 5899998775
No 42
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=89.01 E-value=0.7 Score=46.86 Aligned_cols=153 Identities=11% Similarity=-0.018 Sum_probs=87.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCe-eEEE
Q 017487 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLK-PVVE 113 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~ 113 (370)
.++..+++.+.|.+.. =+.|+..+-- ....+.+.+.+ . .=|++.+ ..|+++.-+|-|.|+. |.. .++.
T Consensus 9 ~~~~a~~l~~~L~~~G---V~~vfg~PG~----~~~~l~~al~~-~-~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~ 78 (568)
T 2c31_A 9 LTDGFHVLIDALKMND---IDTMYGVVGI----PITNLARMWQD-D-GQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLT 78 (568)
T ss_dssp EEEHHHHHHHHHHHTT---CCEEEECCCT----TTHHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred cccHHHHHHHHHHHcC---CCEEEEeCCC----ccHHHHHHHHh-C-CCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4566777777766542 2334333211 12223333432 2 2466665 7999999999999998 543 3344
Q ss_pred cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CC--CCCcchHHHHHHHccCCCcEEEeeCCHHHHHH
Q 017487 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AG--VGAQHSHCYAAWYASVPGLKVLSPYSSEDARG 189 (370)
Q Consensus 114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~--~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~ 189 (370)
|.. .....++.-|.+. + ..++||+++...-.. -+ .|..+..+...+++.+-.+. +...+++++..
T Consensus 79 TsG-pG~~N~~~~i~~A--~-------~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~-~~v~~~~~~~~ 147 (568)
T 2c31_A 79 VSA-PGFLNGVTSLAHA--T-------TNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKAS-FRINSIKDIPI 147 (568)
T ss_dssp CSH-HHHHHHHHHHHHH--H-------HHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEE-EECCSGGGHHH
T ss_pred cCC-ccHHHHHHHHHHH--H-------hcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhhee-eecCCHHHHHH
Confidence 443 4555666666543 2 268999988521111 01 23333222257888877653 44456666666
Q ss_pred HHHHHHh-----CCCCEEEEecccc
Q 017487 190 LLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 190 ~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
.+..|++ .++||+|-.|..+
T Consensus 148 ~i~~A~~~A~~~~~GPV~l~iP~dv 172 (568)
T 2c31_A 148 GIARAVRTAVSGRPGGVYVDLPAKL 172 (568)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEETHH
T ss_pred HHHHHHHHhcCCCCceEEEeCCHHH
Confidence 6666654 4699999877654
No 43
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=88.87 E-value=0.95 Score=45.79 Aligned_cols=153 Identities=10% Similarity=-0.005 Sum_probs=87.1
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCe-eEEE
Q 017487 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLK-PVVE 113 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~ 113 (370)
.++..+++.+.|.+.. =+.|+..+-- ....+.+.+.+ - .=|++.+ ..|+++.-+|-|.|+. |.- .++.
T Consensus 7 ~~~~a~~l~~~L~~~G---V~~vfg~PG~----~~~~l~~al~~-~-~i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~ 76 (564)
T 2q28_A 7 MTDGMHIIVEALKQNN---IDTIYGVVGI----PVTDMARHAQA-E-GIRYIGF-RHEQSAGYAAAASGFLTQKPGICLT 76 (564)
T ss_dssp EEEHHHHHHHHHHHTT---CCEEEECCCT----TTHHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred cCcHHHHHHHHHHHcC---CCEEEECCCc----chHHHHHHHHh-C-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3566677766665442 2334443211 12223333432 2 2467666 7999999999999999 543 3334
Q ss_pred cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--C--CCCcchHHHHHHHccCCCcEEEeeCCHHHHHH
Q 017487 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--G--VGAQHSHCYAAWYASVPGLKVLSPYSSEDARG 189 (370)
Q Consensus 114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~--~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~ 189 (370)
|.. .....++.-|.+. + ..++||+++...-... + .|..+..+...+++.+-.+. +...+++++..
T Consensus 77 TsG-pG~~N~~~gi~~A--~-------~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~-~~v~~~~~~~~ 145 (564)
T 2q28_A 77 VSA-PGFLNGLTALANA--T-------VNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAA-FRVNQPQDLGI 145 (564)
T ss_dssp CSH-HHHHHHHHHHHHH--H-------HHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEE-EECCSGGGHHH
T ss_pred ccC-chHHHHHHHHHHH--H-------hcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhhee-eecCCHHHHHH
Confidence 443 4555566666542 2 2689999885211111 1 23333222257888877664 44455666666
Q ss_pred HHHHHHh-----CCCCEEEEecccc
Q 017487 190 LLKAAIR-----DPDPVVFLENELL 209 (370)
Q Consensus 190 ~l~~a~~-----~~~Pv~i~~~~~l 209 (370)
.++.|++ .++||+|-.|..+
T Consensus 146 ~i~~A~~~A~~~~~GPV~l~iP~dv 170 (564)
T 2q28_A 146 ALARAIRVSVSGRPGGVYLDLPANV 170 (564)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEEHHH
T ss_pred HHHHHHHHHhcCCCceEEEEcCHHH
Confidence 6666654 4699999877653
No 44
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=87.54 E-value=2.2 Score=43.05 Aligned_cols=113 Identities=12% Similarity=-0.010 Sum_probs=66.5
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC----CCCC
Q 017487 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA----AGVG 159 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~----~~~G 159 (370)
|++. ...|++++.+|.|.|+. | .+++.+.+......++.-+.+. + ..++||+++...-.. .+..
T Consensus 44 ~~v~-~~~E~~Aa~~A~Gyar~tg-~~v~~~TsGpG~~N~~~gia~A--~-------~~~~Pll~itg~~~~~~~~~~~~ 112 (563)
T 2vk8_A 44 RWAG-NANELNAAYAADGYARIKG-MSCIITTFGVGELSALNGIAGS--Y-------AEHVGVLHVVGVPSISAQAKQLL 112 (563)
T ss_dssp EECC-CSSHHHHHHHHHHHHHHHS-CEEEEEETTHHHHHHHHHHHHH--H-------HHTCCEEEEEEECCHHHHHTTCC
T ss_pred eEEc-cCchHHHHHHHHHHHHhhC-CcEEEEcCCCcHHHHHHHHHHH--H-------hhCCCEEEEECCCChHHhhcccc
Confidence 5555 57999999999999987 7 4444433334444566666542 2 268999988521111 0001
Q ss_pred Ccc------hHHHHHHHccCCCcEEEeeCCHH----HHHHHHHHHHhCCCCEEEEecccc
Q 017487 160 AQH------SHCYAAWYASVPGLKVLSPYSSE----DARGLLKAAIRDPDPVVFLENELL 209 (370)
Q Consensus 160 ~tH------s~~~~a~~~~iP~~~V~~P~d~~----e~~~~l~~a~~~~~Pv~i~~~~~l 209 (370)
.+| .|+...+++.+-.+. ....+++ .+..+++.|...++||+|-.|...
T Consensus 113 ~~~~~g~~~~q~~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d~ 171 (563)
T 2vk8_A 113 LHHTLGNGDFTVFHRMSANISETT-AMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANL 171 (563)
T ss_dssp CTTSCSSSCSSHHHHHHHTTCSEE-EECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTG
T ss_pred cccccCCcchHHHHHHhhhhEEEE-EEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 111 122357888877654 3444544 444455555545699999877654
No 45
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=86.99 E-value=1.8 Score=44.29 Aligned_cols=154 Identities=11% Similarity=0.007 Sum_probs=83.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEE-E
Q 017487 36 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVV-E 113 (370)
Q Consensus 36 ~~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~-~ 113 (370)
+++..+++.+.|.+.. =+.|+..+-- ....+.+.+.+.-..=|++.+ ..|+++.-+|-|.|+. |...++ .
T Consensus 10 ~~~~a~~l~~~L~~~G---V~~vfg~PG~----~~~~l~dal~~~~~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~~ 81 (603)
T 4feg_A 10 NILAGAAVIKVLEAWG---VDHLYGIPGG----SINSIMDALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCFG 81 (603)
T ss_dssp EEEHHHHHHHHHHHTT---CCEEEECCCG----GGHHHHHHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred eeeHHHHHHHHHHHCC---CCEEEEeCCC----chHHHHHHHHhccCCCeEEEe-cChHHHHHHHHHHHHHhCCceEEEe
Confidence 4566676666665433 2334433210 112334444432101366654 5999999999999988 543333 3
Q ss_pred cccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCCC--CCCCcchHHHHHHHccCCCcEEEeeCCHHHHHHHH
Q 017487 114 FMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAAA--GVGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLL 191 (370)
Q Consensus 114 t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~~--~~G~tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l 191 (370)
|.. .....++.-|.+. + ..++||+++...-... +.+..+..+...+++.+-.+.. ...+++++...+
T Consensus 82 TsG-pG~~N~~~gia~A--~-------~~~vPvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i 150 (603)
T 4feg_A 82 SAG-PGGTHLMNGLYDA--R-------EDHVPVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNV-TAVNAATLPHVI 150 (603)
T ss_dssp CTT-HHHHTTHHHHHHH--H-------HTTCCEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEE-ECCCSTTHHHHH
T ss_pred cCC-chHHHHHHHHHHH--H-------HcCCCEEEEecCCcccccCCCccccccHHHHhhhhceEEE-EcCCHHHHHHHH
Confidence 444 4455555655432 2 2689999885211111 2222221111468887765533 344555555555
Q ss_pred HHHH----hCCCCEEEEeccc
Q 017487 192 KAAI----RDPDPVVFLENEL 208 (370)
Q Consensus 192 ~~a~----~~~~Pv~i~~~~~ 208 (370)
..|+ ..++||+|-.|..
T Consensus 151 ~~A~~~A~~~~GPV~l~iP~d 171 (603)
T 4feg_A 151 DEAIRRAYAHQGVAVVQIPVD 171 (603)
T ss_dssp HHHHHHHHHHTSEEEEEEETT
T ss_pred HHHHHHHhcCCCCEEEEeChh
Confidence 5444 4579999987754
No 46
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=85.36 E-value=3.6 Score=41.90 Aligned_cols=114 Identities=15% Similarity=0.030 Sum_probs=65.0
Q ss_pred CcEeechhhHHHHHHHHHHHhcc-CCe-eEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCC
Q 017487 84 ERVLDTPITEAGFTGIGVGAAYY-GLK-PVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVG 159 (370)
Q Consensus 84 ~r~~~~GIaE~~~v~~A~GlA~~-G~r-p~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G 159 (370)
=|++.+ ..|+++.-+|-|.|+. |.. .++.|.. .....++.-|.+. + ..++||+++...-.. -+.|
T Consensus 70 i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsG-pG~~N~~~gia~A--~-------~~~vPlv~ItG~~~~~~~g~~ 138 (604)
T 2x7j_A 70 ISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSG-TAAANFYPAVVEA--H-------YSRVPIIVLTADRPHELREVG 138 (604)
T ss_dssp CEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSS-HHHHTTHHHHHHH--H-------HHTCCEEEEEEECCGGGSSSC
T ss_pred ceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECCh-hHHHHHHHHHHHH--h-------hcCCCEEEEeCCCCHHHhCCC
Confidence 366666 6999999999999998 533 3344444 4455555655432 2 268999988621111 1222
Q ss_pred CcchHHHHHHHccCCCcEEEe--eCC--------HHHHHHHHHHHHh-CCCCEEEEeccc
Q 017487 160 AQHSHCYAAWYASVPGLKVLS--PYS--------SEDARGLLKAAIR-DPDPVVFLENEL 208 (370)
Q Consensus 160 ~tHs~~~~a~~~~iP~~~V~~--P~d--------~~e~~~~l~~a~~-~~~Pv~i~~~~~ 208 (370)
..+..+...+++.+-.+.... |.+ +..+..+++.|.. .++||+|-.|..
T Consensus 139 ~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 139 APQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp CTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred CCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 222111146777766554333 343 2234444444444 469999987754
No 47
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=85.19 E-value=6 Score=39.65 Aligned_cols=152 Identities=11% Similarity=0.022 Sum_probs=81.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCC-cEeechhhHHHHHHHHHHHhccCCeeEEEcc
Q 017487 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPE-RVLDTPITEAGFTGIGVGAAYYGLKPVVEFM 115 (370)
Q Consensus 37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~-r~~~~GIaE~~~v~~A~GlA~~G~rp~~~t~ 115 (370)
++..+++.+.|.+. .=+.++..+.- ....+.+.+.+ . ++ |++ ....|++++.+|.|.|+....+++.+.
T Consensus 5 ~~~a~~l~~~L~~~---GV~~vfg~PG~----~~~~l~~al~~-~-~~i~~i-~~~~E~~A~~~A~Gyar~tg~~v~~~t 74 (552)
T 1ovm_A 5 YCVADYLLDRLTDC---GADHLFGVPGD----YNLQFLDHVID-S-PDICWV-GCANELNASYAADGYARCKGFAALLTT 74 (552)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEECCCG----GGHHHHHHHHH-C-SSCEEE-ECSSHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred cCHHHHHHHHHHHc---CCCEEEECCCh----hHHHHHHHHhc-C-CCceEE-eeCcHHHHHHHHHHHHHhhCCcEEEEc
Confidence 45666666666543 22344443311 11223333432 2 22 444 466999999999999988335544433
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC----CC------CCCcchHHHHHHHccCCCcEEEeeCCHH
Q 017487 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA----AG------VGAQHSHCYAAWYASVPGLKVLSPYSSE 185 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~----~~------~G~tHs~~~~a~~~~iP~~~V~~P~d~~ 185 (370)
+......++.-+.+. + ..++||+++...-+. .+ .|..-.|+...+++.+-.+....+. +
T Consensus 75 sGpG~~N~~~gv~~A--~-------~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~--~ 143 (552)
T 1ovm_A 75 FGVGELSAMNGIAGS--Y-------AEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTE--Q 143 (552)
T ss_dssp TTHHHHHTHHHHHHH--H-------HTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCT--T
T ss_pred cCCcHHHHHHHHHHH--h-------hhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEcc--c
Confidence 334445556666532 2 268999988521110 00 1110012234788887766555544 4
Q ss_pred HHHHHHHH----HHhCCCCEEEEecccc
Q 017487 186 DARGLLKA----AIRDPDPVVFLENELL 209 (370)
Q Consensus 186 e~~~~l~~----a~~~~~Pv~i~~~~~l 209 (370)
++...++. |...++||+|-.|...
T Consensus 144 ~~~~~i~~A~~~a~~~~GPV~l~iP~d~ 171 (552)
T 1ovm_A 144 NACYEIDRVLTTMLRERRPGYLMLPADV 171 (552)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEEEHHH
T ss_pred cHHHHHHHHHHHHHhCCCCEEEEeehhh
Confidence 44444444 4444699999877643
No 48
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=84.47 E-value=5.7 Score=40.23 Aligned_cols=113 Identities=15% Similarity=0.079 Sum_probs=64.5
Q ss_pred cEeechhhHHHHHHHHHHHhcc-CCeeEEEcccchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC--CCCCCc
Q 017487 85 RVLDTPITEAGFTGIGVGAAYY-GLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA--AGVGAQ 161 (370)
Q Consensus 85 r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~--~~~G~t 161 (370)
|++.+ ..|+++.-+|-|.|+. |...++.+.+......++.-|.+. + ..++||+++...-.. -+.|..
T Consensus 51 ~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~~gia~A--~-------~d~vPll~itG~~p~~~~g~~~~ 120 (578)
T 3lq1_A 51 KIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEA--N-------LSQIPLIVLTADRPHELRNVGAP 120 (578)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTHHHHHHH--H-------HTTCCEEEEEEECCGGGTTSSCT
T ss_pred eEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhhHHHHHH--H-------hcCCCeEEEeCCCCHHhhcCCCC
Confidence 66665 4999999999999988 543333333334455555655432 2 368999988521111 122333
Q ss_pred chHHHHHHHccCCCcEEE--eeCCHHH----HHHHHHHHH----hC-CCCEEEEecc
Q 017487 162 HSHCYAAWYASVPGLKVL--SPYSSED----ARGLLKAAI----RD-PDPVVFLENE 207 (370)
Q Consensus 162 Hs~~~~a~~~~iP~~~V~--~P~d~~e----~~~~l~~a~----~~-~~Pv~i~~~~ 207 (370)
|..+...+++.+-.+... .|.+..+ +...++.|+ .. ++||+|-.|.
T Consensus 121 Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 121 QAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp TCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred CCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 321224677776554433 4555333 223444444 33 7999998775
No 49
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=84.25 E-value=1.9 Score=44.89 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhc-CCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh--hHHHHHHHHHHHhccC-CeeEEEccc
Q 017487 41 EALNSALDEEMSA-DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMT 116 (370)
Q Consensus 41 ~a~~~~L~~l~~~-~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~ 116 (370)
..+.+.|.+.+.. .++++ ++.|++.. ..+ ...+..-..|.+|+..|. +=-..+++|.|++++. -+++++...
T Consensus 464 ~~v~~~L~~~l~~~~~~~i-v~~~vg~~-~~~--~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~G 539 (677)
T 1t9b_A 464 QTVIKKLSKVANDTGRHVI-VTTGVGQH-QMW--AAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDG 539 (677)
T ss_dssp HHHHHHHHHHHHTTCSCEE-EEECSSHH-HHH--HHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEE
T ss_pred HHHHHHHHHHhhcCCCCEE-EEeCCchH-HHH--HHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEe
Confidence 3456667666654 33444 45565411 011 011111112778888764 1222677888888763 355555544
Q ss_pred chHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCC----------CC--CCCc-chHHHHHHHccCCCcEEEe
Q 017487 117 FNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA----------AG--VGAQ-HSHCYAAWYASVPGLKVLS 180 (370)
Q Consensus 117 ~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~----------~~--~G~t-Hs~~~~a~~~~iP~~~V~~ 180 (370)
+.. +..+..+ ..++ ..++|++++. .+|.. .. .+.. +..++..+.+.. |+..+.
T Consensus 540 -DGsf~~~~~eL-~ta~--------~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~ 608 (677)
T 1t9b_A 540 -DASFNMTLTEL-SSAV--------QAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLR 608 (677)
T ss_dssp -HHHHHHHGGGH-HHHH--------HHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEE
T ss_pred -ehHHhccHHHH-HHHH--------HhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHc-CCeEEE
Confidence 443 2223332 2333 3567765554 33321 01 1111 222334455554 677778
Q ss_pred eCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 181 PYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 181 P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
..+.+|+...++++++.++|++|-
T Consensus 609 v~~~~el~~al~~a~~~~gp~lIe 632 (677)
T 1t9b_A 609 VKKQEELDAKLKEFVSTKGPVLLE 632 (677)
T ss_dssp ECSHHHHHHHHHHHHHCSSCEEEE
T ss_pred ECCHHHHHHHHHHHHHCCCcEEEE
Confidence 899999999999999989999884
No 50
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=84.07 E-value=5.5 Score=40.17 Aligned_cols=151 Identities=13% Similarity=0.033 Sum_probs=81.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechhhHHHHHHHHHHHhcc-CCeeEEEcc
Q 017487 37 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYY-GLKPVVEFM 115 (370)
Q Consensus 37 ~~~r~a~~~~L~~l~~~~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GIaE~~~v~~A~GlA~~-G~rp~~~t~ 115 (370)
++..+++.+.|.+. .=+.++..+.- ....+.+.+.+. ..=|++. ...|++++.+|.|.|+. | ..++.+.
T Consensus 25 ~~~a~~l~~~L~~~---GV~~vfg~PG~----~~~~l~~al~~~-~~i~~i~-~~~E~~A~~~A~GyAr~tG-~~v~~~t 94 (570)
T 2vbf_A 25 YTVGDYLLDRLHEL---GIEEIFGVPGD----YNLQFLDQIISR-EDMKWIG-NANELNASYMADGYARTKK-AAAFLTT 94 (570)
T ss_dssp CBHHHHHHHHHHHT---TCCEEEECCCG----GGHHHHHHHHHC-SSCEEEE-CSSHHHHHHHHHHHHHHHS-CEEEEEE
T ss_pred CCHHHHHHHHHHHc---CCCEEEECCCc----chHHHHHHHhcC-CCCeEEC-cCcHHHHHHHHHHHHHHhC-CeEEEEc
Confidence 45666666666543 22344443311 112223333322 1124444 56999999999999965 8 4444333
Q ss_pred cchHHHHHHHHHHHHhhhccccCCCCcccCEEEEeCCCCC---CCCCC-cch------HHHHHHHccCCCcEEEeeCCHH
Q 017487 116 TFNFSMQAIDHIINSAAKSNYMSSGQISVPIVFRGPNGAA---AGVGA-QHS------HCYAAWYASVPGLKVLSPYSSE 185 (370)
Q Consensus 116 ~~~f~~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~~~G~~---~~~G~-tHs------~~~~a~~~~iP~~~V~~P~d~~ 185 (370)
+......++.-+.+. + ..++||+++...-.. +.+.. +|. +....+++.+..+....+ + +
T Consensus 95 sGpG~~N~~~gi~~A--~-------~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~-~-~ 163 (570)
T 2vbf_A 95 FGVGELSAINGLAGS--Y-------AENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLT-A-E 163 (570)
T ss_dssp TTHHHHHHHHHHHHH--H-------HTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECC-T-T
T ss_pred CCCCHHHHHHHHHHH--h-------hhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEEC-c-c
Confidence 434555566666532 2 268999988521111 00111 120 112478888876655444 3 6
Q ss_pred HHHHHHHHHHh----CCCCEEEEeccc
Q 017487 186 DARGLLKAAIR----DPDPVVFLENEL 208 (370)
Q Consensus 186 e~~~~l~~a~~----~~~Pv~i~~~~~ 208 (370)
++...++.|++ .++||+|-.|..
T Consensus 164 ~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 164 NATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp THHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred cHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 66556655554 469999987754
No 51
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=83.23 E-value=2.1 Score=32.49 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=48.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-----CCeEEEEecCCCCCCh-HHHHHHH
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGV-GAEICAS 312 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-----~~~vvvvEe~~~~GGl-g~~i~~~ 312 (370)
++|+|.+. +....|..|.+.|+++||..+.+|+.. |.+...+..+. +=+.|++.++...+|+ .++|.+.
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~~----d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~ 78 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIEH----NRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPSADEVKAK 78 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETTT----CHHHHHHHHHHSSSSSCSCEEEETTSCEEESCCHHHHHHH
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcCC----CHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCCHHHHHHH
Confidence 35666664 566778888899999999999999874 45544333332 2256777665554554 3567777
Q ss_pred HHhh
Q 017487 313 VIEE 316 (370)
Q Consensus 313 l~~~ 316 (370)
|.+.
T Consensus 79 L~el 82 (92)
T 2lqo_A 79 LVKI 82 (92)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
No 52
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=78.38 E-value=4.6 Score=31.44 Aligned_cols=65 Identities=20% Similarity=0.174 Sum_probs=44.7
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHH---HHHHHh-cCCeEEEEecCCCCCChHH
Q 017487 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST---INASVR-KTNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 238 g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~---i~~~~~-~~~~vvvvEe~~~~GGlg~ 307 (370)
...|+|++-| +..+.|.+|.+.|++.|++.+.+|+.. |.+. +.+... .+=+.|+++.. ..||+..
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~----d~~~~~~l~~~~g~~tvP~ifi~g~-~iGG~d~ 87 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFS----DEEVRQGLKAYSSWPTYPQLYVSGE-LIGGLDI 87 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGG----CHHHHHHHHHHHTCCSSCEEEETTE-EEECHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcC----CHHHHHHHHHHHCCCCCCEEEECCE-EEecHHH
Confidence 3568888876 567889999999999999999999875 3332 322222 22356777765 4588764
No 53
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=78.34 E-value=3.6 Score=30.09 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEeccccC-CCHH---HHHHHHhcC------CeEEEEecCCCCCChHHH
Q 017487 249 IVGLSLKAAEILAKEGISAEVINLRSIRP-LDRS---TINASVRKT------NRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P-~d~~---~i~~~~~~~------~~vvvvEe~~~~GGlg~~ 308 (370)
....+.+|.+.|++.|++.+.+|+..... -+.+ .+.+..... =+.|+++++...||+...
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d~l 82 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQL 82 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHHH
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHHHH
Confidence 56778889999999999999999975321 2333 244333322 256777445556887653
No 54
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=75.89 E-value=31 Score=28.25 Aligned_cols=84 Identities=12% Similarity=0.123 Sum_probs=46.0
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChH-HHHHHHHHhhccCCCCCC
Q 017487 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVG-AEICASVIEESFGYLDAP 324 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg-~~i~~~l~~~~~~~l~~~ 324 (370)
+|++-..|...++.|++.|++++++|+... .|.+.+...+.+++.||+.= ....|.+. ..+...+....+ .+.+
T Consensus 15 ~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~~~d~ii~Gs-pty~g~~p~~~~l~~l~~~~~--~~k~ 89 (159)
T 3fni_A 15 YGYSDRLAQAIINGITKTGVGVDVVDLGAA--VDLQELRELVGRCTGLVIGM-SPAASAASIQGALSTILGSVN--EKQA 89 (159)
T ss_dssp STTHHHHHHHHHHHHHHTTCEEEEEESSSC--CCHHHHHHHHHTEEEEEEEC-CBTTSHHHHHHHHHHHHHHCC--TTSE
T ss_pred ChHHHHHHHHHHHHHHHCCCeEEEEECcCc--CCHHHHHHHHHhCCEEEEEc-CcCCCCccHHHHHHHHHhhcc--cCCE
Confidence 455556666677778888999999887642 15565655666776665543 33334443 122222322221 1345
Q ss_pred EEEEecCCCC
Q 017487 325 VERIAGADVP 334 (370)
Q Consensus 325 ~~~ig~~d~~ 334 (370)
+..+|..+.+
T Consensus 90 va~fgs~g~~ 99 (159)
T 3fni_A 90 VGIFETGGGD 99 (159)
T ss_dssp EEEECCSSSC
T ss_pred EEEEEcCCCC
Confidence 5666654433
No 55
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=75.19 E-value=3.5 Score=31.94 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=45.3
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHHH
Q 017487 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 238 g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~~ 308 (370)
..+++|++.+ .....+.+|.+.|++.|++.+.+|+..- |--.+.+.+.... +=+.|+++.. ..||+...
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi~g~-~iGG~d~l 90 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYIGGE-FFGGCDIT 90 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEETTE-EEECHHHH
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEECCE-EEeCHHHH
Confidence 3568899888 3788899999999999999999998641 1111223332221 2245667654 45887653
No 56
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=74.36 E-value=4.4 Score=32.96 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=44.2
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHH
Q 017487 239 KDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 239 ~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~ 307 (370)
.+++|.++| .....|.+|.+.|++.|++.+.+|+..= |--.+.+.+.... +=+.|+++.. ..||+..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d-~~~~~~L~~~~G~~tvP~VfI~G~-~iGG~d~ 106 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQN-PDIRAELPKYANWPTFPQLWVDGE-LVGGCDI 106 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEETTE-EEESHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCC-HHHHHHHHHHHCCCCcCEEEECCE-EEEChHH
Confidence 468888887 6778899999999999999999998751 1111223332221 2256677654 4588754
No 57
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=71.48 E-value=5.6 Score=40.54 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=64.0
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017487 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA- 155 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~- 155 (370)
|.+|+..+. +=-..+++|.|++++. -+++++... +.. +..+..+ +.++ ..++|++++. . .+..
T Consensus 410 ~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~G-DG~~~~~~~~l-~~a~--------~~~lp~~~vv~nN~~~~~ 479 (603)
T 4feg_A 410 SNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAG-DGGASMTMQDL-ATQV--------QYHLPVINVVFTNCQYGF 479 (603)
T ss_dssp TCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEE-HHHHHHHGGGH-HHHH--------HTTCCCEEEEEECSBCHH
T ss_pred CCceecCcccccccchhHHHhhHHHhCCCCcEEEEec-cHHHhhhHHHH-HHHH--------HHCcCeEEEEEECCchHH
Confidence 667776432 1123677888888875 456665544 443 2233333 2333 3578877665 2 2221
Q ss_pred ----------C-CCCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHH--hCCCCEEEE
Q 017487 156 ----------A-GVGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAI--RDPDPVVFL 204 (370)
Q Consensus 156 ----------~-~~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~--~~~~Pv~i~ 204 (370)
. ..+.. +..++..+.... |+..+.+.+..|+...++.+. +.++|++|-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~~gP~lIe 541 (603)
T 4feg_A 480 IKDEQEDTNQNDFIGVEFNDIDFSKIADGV-HMQAFRVNKIEQLPDVFEQAKAIAQHEPVLID 541 (603)
T ss_dssp HHHHHHHHCSSCCCSSBCCCCCHHHHHHHT-TCEEEEECBGGGHHHHHHHHHHHTTTSCEEEE
T ss_pred HHHHHHHhcCCCcccCcCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 11211 222233344432 566777789999999999999 788999984
No 58
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=70.96 E-value=16 Score=37.98 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=31.0
Q ss_pred HHHHccCCCcEEEee---CCHHHHHHHHHHHHh-CCCCEEEEe
Q 017487 167 AAWYASVPGLKVLSP---YSSEDARGLLKAAIR-DPDPVVFLE 205 (370)
Q Consensus 167 ~a~~~~iP~~~V~~P---~d~~e~~~~l~~a~~-~~~Pv~i~~ 205 (370)
...+++. ||.++.+ .|..++..+++.+.+ .++|++|..
T Consensus 228 ~~~~~a~-G~~~~~v~DG~d~~~l~~Al~~a~~~~~~P~lI~v 269 (690)
T 3m49_A 228 EDRYKAY-GWQVIRVEDGNDIEAIAKAIEEAKADEKRPTLIEV 269 (690)
T ss_dssp HHHHHHH-TCEEEEESCTTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred HHHHHHc-CCcEEEEecCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4566665 8999988 789999999999988 689999854
No 59
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=69.78 E-value=27 Score=33.70 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=57.6
Q ss_pred EEEEechh----HHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhh-
Q 017487 242 TITAFSKI----VGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEE- 316 (370)
Q Consensus 242 ~Iia~G~~----~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~- 316 (370)
++|.|+|| -..|...++.|+++|+++.++++..+..-|...+.+.+.+++.+++-= .+..|++-..+...+.+-
T Consensus 268 v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGs-pT~~~~~~p~~~~~l~~l~ 346 (410)
T 4dik_A 268 VTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGV-STYEAEIHPLMRFTLLEII 346 (410)
T ss_dssp EEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEE-CCTTSSSCHHHHHHHHHHH
T ss_pred eeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEe-CCcCCcCCHHHHHHHHHHH
Confidence 44455555 455666777788999999999999888888888888788888766544 445677766665555431
Q ss_pred ccCCCCCCEEEEec
Q 017487 317 SFGYLDAPVERIAG 330 (370)
Q Consensus 317 ~~~~l~~~~~~ig~ 330 (370)
.....+.++..+|.
T Consensus 347 ~~~~~~K~~~~FGS 360 (410)
T 4dik_A 347 DKANYEKPVLVFGV 360 (410)
T ss_dssp HHCCCCCEEEEEEE
T ss_pred hcccCCCEEEEEEC
Confidence 11112345555554
No 60
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=69.59 E-value=7.7 Score=39.06 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCcEeechhh--HHHHHHHHHHHhccCCeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCC
Q 017487 83 PERVLDTPIT--EAGFTGIGVGAAYYGLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAG 157 (370)
Q Consensus 83 p~r~~~~GIa--E~~~v~~A~GlA~~G~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~ 157 (370)
|.++++.|.. =-..+++|.|++++.-++++.... +... ..+..+ ..+. ..++|++++. .+|....
T Consensus 416 p~~~~~~g~~g~~G~~l~~AiGaala~~~~vv~i~G-DGsf~~~~~el-~ta~--------~~~l~~~ivv~NN~~~~~~ 485 (568)
T 2c31_A 416 PRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAVEG-DSAFGFSGMEL-ETIC--------RYNLPVTVIIMNNGGIYKG 485 (568)
T ss_dssp TTCEEESTTTTCSSCHHHHHHHHHHHHCSCEEEEEE-HHHHHTTGGGH-HHHH--------HTTCCEEEEEEESSBSSCS
T ss_pred CCeEEcCCCCccccccHHHHHHHHhCCCCcEEEEEc-chHhhccHHHH-HHHH--------HhCCCeEEEEEeCchhHHH
Confidence 7778775431 223477788888764456666544 4442 112222 2233 3578877665 3342111
Q ss_pred C------CC-----cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 158 V------GA-----QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 158 ~------G~-----tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
. +. .|..++..+.+. -|+.-+...+.+|+...++++++.++|++|-
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~~a~a-~G~~~~~v~~~~el~~al~~a~~~~~p~lie 542 (568)
T 2c31_A 486 NEADPQPGVISCTRLTRGRYDMMMEA-FGGKGYVANTPAELKAALEEAVASGKPCLIN 542 (568)
T ss_dssp CCCCSBTTBCCTTBCCCCCHHHHHHT-TTCEEEEESSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHhhcCCcccCcCCCCCHHHHHHH-cCCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 00 222233344444 3777888899999999999999888999884
No 61
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=68.36 E-value=8.9 Score=38.55 Aligned_cols=97 Identities=19% Similarity=0.207 Sum_probs=55.6
Q ss_pred HHHHHHHhccCCeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCC--CCCC-----------CC
Q 017487 97 TGIGVGAAYYGLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGA--AAGV-----------GA 160 (370)
Q Consensus 97 v~~A~GlA~~G~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~--~~~~-----------G~ 160 (370)
++.|.|++++--+++++... +... ..+..+ ..+. ..++|++++. . +|. .+.. +.
T Consensus 422 l~~A~Gaa~a~~~~vv~i~G-DGsf~~~~~eL-~ta~--------~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~ 491 (556)
T 3hww_A 422 LSTAAGVQRASGKPTLAIVG-DLSALYDLNAL-ALLR--------QVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLM 491 (556)
T ss_dssp HHHHHHHHHHHCCCEEEEEE-HHHHHHTGGGH-HHHT--------TCSSCEEEEEEESCC-----------------CCC
T ss_pred HHHHHHHHhcCCCcEEEEEc-cHHhhhcchhh-Hhhc--------ccCCCcEEEEEECCCCCcccCCCCcchhHHHhccC
Confidence 77888888764456666644 4442 111222 1222 4678877765 2 221 1110 01
Q ss_pred cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 161 QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 161 tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.|..++..+.+.. |+.-+...+++|+...++.+++.++|++|-
T Consensus 492 ~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 534 (556)
T 3hww_A 492 PQNVHFEHAAAMF-ELKYHRPQNWQELETAFADAWRTPTTTVIE 534 (556)
T ss_dssp CCCCCSHHHHHHT-TCEEECCSSHHHHHHHHHHHTTSSSEEEEE
T ss_pred CCCCCHHHHHHHc-CCcEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1111222333332 677788899999999999999989999884
No 62
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=68.15 E-value=26 Score=30.75 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017487 251 GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
..+..+++.|++.|.+++++|+.. .+|.+...+.+...+.||+.=- ...+++...+..++-
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~--~~Dv~~~~~~l~~aD~iv~~~P-~y~~~~p~~lK~~iD 107 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQ--GYDIESEIENYLWADTIIYQMP-AWWMGEPWILKKYID 107 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGG--CCCHHHHHHHHHHCSEEEEEEE-CBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCC--ccCHHHHHHHHHhCCEEEEECC-hHhccCCHHHHHHHH
Confidence 334456777888899999999985 7888888888888887766543 335777776666553
No 63
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=67.84 E-value=12 Score=39.01 Aligned_cols=85 Identities=12% Similarity=0.118 Sum_probs=50.5
Q ss_pred eeEEEcccchHHH---HHHHHHHHHhhhccccCCCCcccC-EEEEeC-CCCCCCCCCcc---hHHHHHHHccCCCcEEEe
Q 017487 109 KPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVP-IVFRGP-NGAAAGVGAQH---SHCYAAWYASVPGLKVLS 180 (370)
Q Consensus 109 rp~~~t~~~~f~~---ra~dqi~~~~a~~~~~~~g~~~~p-vv~~~~-~G~~~~~G~tH---s~~~~a~~~~iP~~~V~~ 180 (370)
+.+++... +... ..++.+. .++ ..++| ++++.. .+.+ -++.++ ..++...+++. ||.++.
T Consensus 188 ~~vv~i~G-DG~l~eG~~~Eal~-~A~--------~~~L~~livI~dnN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~ 255 (711)
T 3uk1_A 188 HHTYVFLG-DGCLMEGISHEACS-LAG--------TLKLNKLIALYDDNGIS-IDGDVVNWFHDDTPKRFEAY-GWNVIP 255 (711)
T ss_dssp CCEEEEEC-HHHHHSHHHHHHHH-HHH--------HTTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHT-TCEEEE
T ss_pred CeEEEEEC-CcchhhccHHHHHH-HHH--------HhCCCcEEEEEECCCcc-cccchhhhcCCCHHHHHHHc-CCcEEE
Confidence 34555544 5543 3555553 344 36787 555553 3321 112222 22334667665 788776
Q ss_pred e---CCHHHHHHHHHHHHhCCCCEEEEe
Q 017487 181 P---YSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 181 P---~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
| .|..++...++.|.+.++|++|..
T Consensus 256 ~vdG~d~~~l~~Al~~A~~~~~P~lI~v 283 (711)
T 3uk1_A 256 NVNGHDVDAIDAAIAKAKRSDKPSLICC 283 (711)
T ss_dssp EEETTCHHHHHHHHHHHTTCSSCEEEEE
T ss_pred EeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 5 488999999999988889999854
No 64
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=67.35 E-value=16 Score=32.76 Aligned_cols=65 Identities=14% Similarity=0.025 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEeccccCCC--------HHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017487 249 IVGLSLKAAEILAKEGISAEVINLRSIRPLD--------RSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d--------~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
....+..+++.+++.|++++++|+..+..++ .+.+.+.+...+.||++=-- ..+++...+..++-
T Consensus 50 t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~-Yn~sipa~LKn~iD 122 (247)
T 2q62_A 50 SRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPE-RHGAMTGIMKAQID 122 (247)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEEC-SSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCC-CCCCccHHHHHHHH
Confidence 3345555677788889999999998753221 34566777778776554433 35888888887774
No 65
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=67.31 E-value=12 Score=31.87 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=44.2
Q ss_pred chhHHHHHHHHHH-HHhcCCceeEEEeccccC--------C--CHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017487 247 SKIVGLSLKAAEI-LAKEGISAEVINLRSIRP--------L--DRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 247 G~~~~~al~Aa~~-L~~~Gi~v~Vi~~~~l~P--------~--d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
|+....+..+++. |+++|.+++++|+..+.. . +.+.+.+.+..++.||+.=--+ .|++...+..++.
T Consensus 16 g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y-~~~~p~~lK~~ld 93 (197)
T 2vzf_A 16 STTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIY-KASYTGLLKAFLD 93 (197)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECB-TTBCCHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCcc-CCCCCHHHHHHHH
Confidence 4455666667788 888899999999876521 1 2334556677777765544333 5788887777764
No 66
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=67.25 E-value=11 Score=29.68 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=44.5
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCc-eeEEEeccccCCCHHH---HHHHHh-cCCeEEEEecCCCCCChHH
Q 017487 238 GKDVTITAFS----KIVGLSLKAAEILAKEGIS-AEVINLRSIRPLDRST---INASVR-KTNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 238 g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~-v~Vi~~~~l~P~d~~~---i~~~~~-~~~~vvvvEe~~~~GGlg~ 307 (370)
..+|+|++.+ .....|.+|.+.|++.|+. .+.+|+.. |.+. +.+... .+=+.|+++... .||+..
T Consensus 19 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~----d~~~~~~l~~~tg~~tvP~vfI~g~~-IGG~d~ 92 (118)
T 2wem_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD----DPELRQGIKDYSNWPTIPQVYLNGEF-VGGCDI 92 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSS----CHHHHHHHHHHHTCCSSCEEEETTEE-EESHHH
T ss_pred cCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCC----CHHHHHHHHHHhCCCCcCeEEECCEE-EeChHH
Confidence 3579999988 4788899999999999995 99999863 3332 222212 222567777644 588765
No 67
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=67.13 E-value=14 Score=37.42 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=62.5
Q ss_pred CCcEeec---hhhHHHHHHHHHHHhccC-CeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCC-
Q 017487 83 PERVLDT---PITEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGA- 154 (370)
Q Consensus 83 p~r~~~~---GIaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~- 154 (370)
|.+|+.. |.- -..+++|.|++++- -+++++... +.. +..+..+ ..++ ..++|++++. .+|.
T Consensus 403 ~~~~~~~~~~g~m-G~~l~~AiGaala~~~~~vv~i~G-DG~~~~~~~~L-~ta~--------~~~l~~~ivv~NN~~~~ 471 (590)
T 1v5e_A 403 KNMWRTSPLFATM-GIAIPGGLGAKNTYPDRQVWNIIG-DGAFSMTYPDV-VTNV--------RYNMPVINVVFSNTEYA 471 (590)
T ss_dssp TSEEECCCSSCCT-TCHHHHHHHHHHHCTTSCEEEEEE-HHHHHHHGGGH-HHHH--------HTTCCCEEEEEECSSCT
T ss_pred CCeEEcCCCCCcc-cChHHHHHHHHHhCCCCeEEEEEe-chHHhchHHHH-HHHH--------HhCCCCEEEEEECCchH
Confidence 6777742 221 34567777877662 355665544 443 2233333 2333 3567866654 2222
Q ss_pred -CCC-C--------CC-cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhC---CCCEEEE
Q 017487 155 -AAG-V--------GA-QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRD---PDPVVFL 204 (370)
Q Consensus 155 -~~~-~--------G~-tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~---~~Pv~i~ 204 (370)
... . |. .|..++..+.+.. |+..+...+++|+...++++++. ++|++|-
T Consensus 472 ~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~gp~lie 534 (590)
T 1v5e_A 472 FIKNKYEDTNKNLFGVDFTDVDYAKIAEAQ-GAKGFTVSRIEDMDRVMAEAVAANKAGHTVVID 534 (590)
T ss_dssp TGGGTTSSSCCSCCCCCCCCCCHHHHHHHT-TSEEEEECBHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcCCCccccCCCCCHHHHHHHc-CCEEEEECCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 111 0 11 1222334455554 67777788999999999999987 8999884
No 68
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=65.51 E-value=54 Score=26.71 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=46.7
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHH-HHHHHHHhhccCCCCCC
Q 017487 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGA-EICASVIEESFGYLDAP 324 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~-~i~~~l~~~~~~~l~~~ 324 (370)
+|++-..|...++.|+++|++++++|+.. .+.+.+.+.+.+++.|++.=-.+ .|.+.. .+.+.+....+ .+.+
T Consensus 11 tGnT~~~A~~ia~~l~~~g~~v~~~~~~~---~~~~~~~~~~~~~d~ii~Gspty-~g~~p~~~fl~~l~~~~l--~gk~ 84 (161)
T 3hly_A 11 YGYSDRLSQAIGRGLVKTGVAVEMVDLRA---VDPQELIEAVSSARGIVLGTPPS-QPSEAVATALSTIFAAAH--NKQA 84 (161)
T ss_dssp STTHHHHHHHHHHHHHHTTCCEEEEETTT---CCHHHHHHHHHHCSEEEEECCBS-SCCHHHHHHHHHHHHHCC--TTSE
T ss_pred ChHHHHHHHHHHHHHHhCCCeEEEEECCC---CCHHHHHHHHHhCCEEEEEcCCc-CCchhHHHHHHHHHhhhh--CCCE
Confidence 35555666667777888899999998764 35555655566777766654333 344432 22222322112 1345
Q ss_pred EEEEecCCCC
Q 017487 325 VERIAGADVP 334 (370)
Q Consensus 325 ~~~ig~~d~~ 334 (370)
+..+|..+.+
T Consensus 85 v~~fgs~g~~ 94 (161)
T 3hly_A 85 IGLFDSYGGD 94 (161)
T ss_dssp EEEECCCCSS
T ss_pred EEEEEcCCCC
Confidence 6666655443
No 69
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=64.23 E-value=19 Score=37.05 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=56.1
Q ss_pred HHHHHHHHhccC------------CeeEEEcccchHHH---HHHHHHHHHhhhccccCCCCcccC-EEEEeC-CCC--CC
Q 017487 96 FTGIGVGAAYYG------------LKPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVP-IVFRGP-NGA--AA 156 (370)
Q Consensus 96 ~v~~A~GlA~~G------------~rp~~~t~~~~f~~---ra~dqi~~~~a~~~~~~~g~~~~p-vv~~~~-~G~--~~ 156 (370)
.++.|.|+|++- -+.+++... +... .+++.+. .++ ..++| ++++.. .+. .+
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~G-DG~~~eG~~~Eal~-~A~--------~~~L~~livi~nnN~~~i~~ 188 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCG-DGDLQEGISYEACS-LAG--------LHKLDNFILIYDSNNISIEG 188 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEE-HHHHHSHHHHHHHH-HHH--------HTTCTTEEEEEEECSEETTE
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEEEC-CcchhhccHHHHHH-HHH--------HcCCCcEEEEEECCCccccc
Confidence 355666666542 244444544 5443 4556553 344 25676 555543 332 21
Q ss_pred CCCCcchHHHHHHHccCCCcEEEeeC---CHHHHHHHHHHHHhCCCCEEEEe
Q 017487 157 GVGAQHSHCYAAWYASVPGLKVLSPY---SSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 157 ~~G~tHs~~~~a~~~~iP~~~V~~P~---d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
..+.....++...+++. ||.++ +. |..++...++.|.+.++|++|..
T Consensus 189 ~~~~~~~~d~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~~~~P~lI~v 238 (632)
T 3l84_A 189 DVGLAFNENVKMRFEAQ-GFEVL-SINGHDYEEINKALEQAKKSTKPCLIIA 238 (632)
T ss_dssp EGGGTCCCCHHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHHTCSSCEEEEE
T ss_pred chhhhcChhHHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 11111122334677776 88887 44 78999999999988889999854
No 70
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=64.07 E-value=10 Score=29.95 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=31.3
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEe
Q 017487 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVE 297 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvE 297 (370)
+|++-..|...++.|+++|++++++|+....+ + .+.+++.|++.=
T Consensus 9 tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~---~----~l~~~d~iiig~ 53 (138)
T 5nul_A 9 TGNTEKMAELIAKGIIESGKDVNTINVSDVNI---D----ELLNEDILILGC 53 (138)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH---H----HHTTCSEEEEEE
T ss_pred CchHHHHHHHHHHHHHHCCCeEEEEEhhhCCH---H----HHhhCCEEEEEc
Confidence 46666777777778888899999999876532 2 245667666554
No 71
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=63.59 E-value=55 Score=26.10 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=65.3
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCceeEEEeccccCCCH--HHHHHHHhcC---C-eEEEEecCCCCCChHHHHHHH
Q 017487 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDR--STINASVRKT---N-RLVTVEEGFPQHGVGAEICAS 312 (370)
Q Consensus 240 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~--~~i~~~~~~~---~-~vvvvEe~~~~GGlg~~i~~~ 312 (370)
.++|++-|. ......++++.+-.+ -.+..+|+.-=...+. +.+++.+++. + -++.+|- |... .++..
T Consensus 6 giiivsHG~~~A~~l~~~a~~i~G~-~~~~aid~~~~~~~~~~~~~i~~~i~~~d~~~GVLiL~Dm----GSp~-n~a~~ 79 (130)
T 3gx1_A 6 EVIVMMHGRSTATSMVETVQELLSI-ESGIALDMPLTVEVKAMYEKLKQTVVKLNPVKGVLILSDM----GSLT-SFGNI 79 (130)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEECTTSCHHHHHHHHHHHHHTSCCTTCEEEEECS----GGGG-THHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHcCc-cCEEEEEecCCCCHHHHHHHHHHHHHhhCCCCCEEEEEeC----CCHH-HHHHH
Confidence 488999999 888888999987655 5777887653221111 3355566653 2 3565664 3332 23444
Q ss_pred HHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhc
Q 017487 313 VIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 362 (370)
Q Consensus 313 l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~~ 362 (370)
+.++. +.++..+...+.|.--........+-+-++|++.+.++.+.
T Consensus 80 l~~~~----~~~v~vI~gvnlpmllea~~~~~~~~~l~el~~~~~~~~~~ 125 (130)
T 3gx1_A 80 LTEEL----GIRTKTVTMVSTPVVLEAMRKASLGRGLEDIYQSCEQLFEN 125 (130)
T ss_dssp HHHHH----CCCEEEECSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHhc----CCCEEEEeCCCHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 44331 23566676655432111111223455899999999888753
No 72
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=63.22 E-value=8.2 Score=29.55 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=44.2
Q ss_pred CCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHH---HHHHHHh-cCCeEEEEecCCCCCChHH
Q 017487 238 GKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS---TINASVR-KTNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 238 g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~---~i~~~~~-~~~~vvvvEe~~~~GGlg~ 307 (370)
..+++|.+.| .....|.+|.+.|++.|++...+|+.. |.+ .+.+... .+=+.|+++.. ..||+..
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~----~~~~~~~l~~~~g~~~vP~ifi~g~-~igG~d~ 86 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILE----DEEVRQGLKTFSNWPTYPQLYVRGD-LVGGLDI 86 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSS----CHHHHHHHHHHHSCCSSCEEECSSS-EEECHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCC----CHHHHHHHHHHhCCCCCCEEEECCE-EEcCHHH
Confidence 3468899888 677788899999999999999999875 333 2333222 12245666654 4688754
No 73
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=63.11 E-value=9.8 Score=38.13 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=62.8
Q ss_pred CCcEeech-h-hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe--CCCC--
Q 017487 83 PERVLDTP-I-TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGA-- 154 (370)
Q Consensus 83 p~r~~~~G-I-aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~-- 154 (370)
|.+|+..+ . +=-..+++|.|++++. -++++.... +... ..+..+ ..++ ..++|++++. .+|.
T Consensus 396 ~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~G-DGs~~~~~~~L-~ta~--------~~~l~~~ivv~nN~~~g~ 465 (549)
T 3eya_A 396 KRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCG-DGGFSMLMGDF-LSVV--------QMKLPVKIVVFNNSVLGF 465 (549)
T ss_dssp SCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEE-HHHHHHTGGGH-HHHH--------HTTCCCEEEEEECSBCCC
T ss_pred CCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEc-cchhhccHHHH-HHHH--------HhCCCeEEEEEeCCccHH
Confidence 66777531 0 1113678888888874 466666654 4432 222322 2333 2567765554 2222
Q ss_pred CCC---------CCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 155 AAG---------VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 155 ~~~---------~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
... .+.+ |..++..+.+.. |+..+...+++|+...++.+++.++|++|-
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 524 (549)
T 3eya_A 466 VAMEMKAGGYLTDGTELHDTNFARIAEAC-GITGIRVEKASEVDEALQRAFSIDGPVLVD 524 (549)
T ss_dssp C------------CCBCCCCCHHHHHHHT-TSEEEEECSGGGHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHhcCCCCcCCcCCCCCHHHHHHHc-CCcEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 110 0111 212233444443 677778899999999999999999999884
No 74
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=62.59 E-value=15 Score=30.95 Aligned_cols=68 Identities=7% Similarity=0.043 Sum_probs=43.3
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHH-------------HHHHHHhcCCeEEEEecCCCCCChHHHHHHH
Q 017487 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS-------------TINASVRKTNRLVTVEEGFPQHGVGAEICAS 312 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~-------------~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~ 312 (370)
+|++-..|...++.|++.|++++++|+... +.+.- ...+.+.+++.||+.=-- ..|++...+..+
T Consensus 16 ~g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~-y~~~~~~~lk~~ 93 (200)
T 2a5l_A 16 HGATAEMARQIARGVEQGGFEARVRTVPAV-STECEAVAPDIPAEGALYATLEDLKNCAGLALGSPT-RFGNMASPLKYF 93 (200)
T ss_dssp SSHHHHHHHHHHHHHHHTTCEEEEEBCCCE-EC-------------CCBCCHHHHHTCSEEEEEEEC-BTTBCCHHHHHH
T ss_pred CChHHHHHHHHHHHHhhCCCEEEEEEhhhc-cchhhhhccccccccCchhhHHHHHHCCEEEEEcCh-hccCccHHHHHH
Confidence 355666677777888888999999998875 21110 113446667766554433 357888877777
Q ss_pred HHh
Q 017487 313 VIE 315 (370)
Q Consensus 313 l~~ 315 (370)
+..
T Consensus 94 ld~ 96 (200)
T 2a5l_A 94 LDG 96 (200)
T ss_dssp HHT
T ss_pred HHH
Confidence 654
No 75
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=61.88 E-value=20 Score=31.48 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHHHhc-CCceeEEEeccccC---------------------CCHHHHHHHHhcCCeEEEEecCCCCCC
Q 017487 247 SKIVGLSLKAAEILAKE-GISAEVINLRSIRP---------------------LDRSTINASVRKTNRLVTVEEGFPQHG 304 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P---------------------~d~~~i~~~~~~~~~vvvvEe~~~~GG 304 (370)
|.+...+..+++.|++. |.+++++|+..+.+ -|.+.+.+.+...+.||+.=- ...++
T Consensus 15 s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP-~y~~~ 93 (242)
T 1sqs_A 15 SKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSP-VYLQN 93 (242)
T ss_dssp CHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEE-ECSSS
T ss_pred ChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEcc-ccccC
Confidence 34455566677888887 99999999876421 234456666777877655433 34588
Q ss_pred hHHHHHHHHHh
Q 017487 305 VGAEICASVIE 315 (370)
Q Consensus 305 lg~~i~~~l~~ 315 (370)
+...+..++..
T Consensus 94 ~p~~lK~~iDr 104 (242)
T 1sqs_A 94 VSVDTKNFIER 104 (242)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 88888777653
No 76
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=61.71 E-value=16 Score=36.67 Aligned_cols=111 Identities=16% Similarity=0.130 Sum_probs=64.4
Q ss_pred CCCcEeec---hhhHHHHHHHHHHHhccC---CeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe--CC
Q 017487 82 GPERVLDT---PITEAGFTGIGVGAAYYG---LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG--PN 152 (370)
Q Consensus 82 ~p~r~~~~---GIaE~~~v~~A~GlA~~G---~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~ 152 (370)
.|.+|+.. |.- -..+++|.|++++- -+++++... +.. +..+..+ +.++ ..++|++++. .+
T Consensus 408 ~~~~~~~~~g~g~~-G~~l~~AiGaa~a~~~~~~~vv~i~G-DG~~~~~~~~L-~ta~--------~~~l~~~ivv~nN~ 476 (563)
T 2uz1_A 408 KPGGFLCHGYLGSM-GVGFGTALGAQVADLEAGRRTILVTG-DGSVGYSIGEF-DTLV--------RKQLPLIVIIMNNQ 476 (563)
T ss_dssp CCSEEECCCTTCCT-TTHHHHHHHHHHHHHHHTCEEEEEEE-HHHHGGGTTHH-HHHH--------HHTCCCEEEEEECS
T ss_pred CCCeEECCCCCccc-cChHHHHHHHHHHhhCCCCeEEEEEc-cHHHhCCHHHH-HHHH--------HhCCCeEEEEEeCC
Confidence 37788872 222 25667888887653 456665544 443 2223333 2233 2567766554 22
Q ss_pred CCC--C-------C----CCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 153 GAA--A-------G----VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 153 G~~--~-------~----~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
|.. . + .+.. |..++..+.... |+..+...+.+|+...++.+++.++|++|-
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 541 (563)
T 2uz1_A 477 SWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAF-GADGYHVDSVESFSAALAQALAHNRPACIN 541 (563)
T ss_dssp BCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHT-TCEEEEECSHHHHHHHHHHHHHSSSCEEEE
T ss_pred cchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCCEEEE
Confidence 221 1 0 1111 222333455554 677788899999999999999988999884
No 77
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=61.46 E-value=26 Score=35.79 Aligned_cols=31 Identities=13% Similarity=0.015 Sum_probs=24.2
Q ss_pred CcEEE---eeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017487 175 GLKVL---SPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 175 ~~~V~---~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
|+..+ ...|..++...++.+.+.++|++|-.
T Consensus 247 G~~~~g~vdG~d~~~l~~al~~A~~~~gP~lI~v 280 (621)
T 2o1s_A 247 GFNYIGPVDGHDVLGLITTLKNMRDLKGPQFLHI 280 (621)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHHHSCSEEEEEE
T ss_pred CCeEeeeeCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 44444 44689999999999998899998853
No 78
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=60.35 E-value=15 Score=28.91 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=44.5
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhcCCc---eeEEEeccccCCCHHHHHHHHh-----cCCeEEEEecCCCCCCh
Q 017487 238 GKDVTITAFSK----IVGLSLKAAEILAKEGIS---AEVINLRSIRPLDRSTINASVR-----KTNRLVTVEEGFPQHGV 305 (370)
Q Consensus 238 g~dv~Iia~G~----~~~~al~Aa~~L~~~Gi~---v~Vi~~~~l~P~d~~~i~~~~~-----~~~~vvvvEe~~~~GGl 305 (370)
..+|+|++.|+ ....|..|.+.|++.|+. .+.+|+.. |.+ +++.+. .+=+.|++... ..||+
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~----~~~-~~~~l~~~sg~~tvP~vfI~g~-~iGG~ 88 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLE----DPE-LREGIKEFSEWPTIPQLYVNKE-FIGGC 88 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTT----CHH-HHHHHHHHHTCCSSCEEEETTE-EEESH
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecC----CHH-HHHHHHHHhCCCCCCeEEECCE-EEecH
Confidence 45689999883 788899999999999998 88888753 333 333332 12256777754 45887
Q ss_pred HHH
Q 017487 306 GAE 308 (370)
Q Consensus 306 g~~ 308 (370)
...
T Consensus 89 d~l 91 (121)
T 3gx8_A 89 DVI 91 (121)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 79
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=60.22 E-value=19 Score=36.33 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=54.5
Q ss_pred HHHHHHHHhccCCeeEEEcccchHHHH-HHHHHHHHhhhccccCCCCcccCEEEEe-CCCCCCCCCC--c----------
Q 017487 96 FTGIGVGAAYYGLKPVVEFMTFNFSMQ-AIDHIINSAAKSNYMSSGQISVPIVFRG-PNGAAAGVGA--Q---------- 161 (370)
Q Consensus 96 ~v~~A~GlA~~G~rp~~~t~~~~f~~r-a~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G~~~~~G~--t---------- 161 (370)
.++.|.|+|..+ +++++... +.... .+..+ ..++ ..++|++++. ..+..+-... .
T Consensus 441 ~l~~AiGaa~~~-~~vv~i~G-DGsf~~~~~eL-~ta~--------~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~ 509 (578)
T 3lq1_A 441 VVSSALGASVVF-QPMFLLIG-DLSFYHDMNGL-LMAK--------KYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESL 509 (578)
T ss_dssp HHHHHHHHTTTS-SSEEEEEE-HHHHHHTGGGG-HHHH--------HTTCCEEEEEECCC--------------------
T ss_pred HHHHHHHHhcCC-CCEEEEEc-hHHHHhhHHHH-Hhhc--------cCCCCeEEEEEECCcCccccccccccccchhhhh
Confidence 378899998764 55555544 44421 12212 2222 3678887765 3221110000 0
Q ss_pred ----chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 162 ----HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 162 ----Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
|..++..+.+.. |+.-+...+++|+...++.+++.++|++|-
T Consensus 510 ~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 555 (578)
T 3lq1_A 510 FGTSTELDFRFAAAFY-DADYHEAKSVDELEEAIDKASYHKGLDIIE 555 (578)
T ss_dssp -----CCCTHHHHHHT-TCEEEECCSHHHHHHHHHHHTTSSSEEEEE
T ss_pred ccCCCCCCHHHHHHHc-CCceEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 101112233332 667788899999999999999989999884
No 80
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=60.07 E-value=20 Score=30.77 Aligned_cols=65 Identities=6% Similarity=0.173 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHH----------HHHHHHhcCCeEEEEecCCCCCChHHHHHHHH
Q 017487 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS----------TINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~----------~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
+......+++..+.++|.+++++|+.-|-.|+.+ .+++.+...+.+|++=-- .+|++...+.+.+
T Consensus 16 S~~~~la~~~~~~~~~~~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPe-Yn~s~pg~LKn~i 90 (190)
T 3u7r_A 16 SLNHKLMKVLQKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPE-YNRSYPGMIKNAI 90 (190)
T ss_dssp CHHHHHHHHHHHHHTTTEEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCC-BTTBCCHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechh-hcccCCHHHHHHH
Confidence 3344444555556677999999999876444432 466778888876555433 3477777776655
No 81
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=59.49 E-value=5.9 Score=39.53 Aligned_cols=111 Identities=18% Similarity=0.173 Sum_probs=62.7
Q ss_pred CCcEeech-hhHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC--
Q 017487 83 PERVLDTP-ITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA-- 155 (370)
Q Consensus 83 p~r~~~~G-IaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~-- 155 (370)
|.+|+..+ -+=-..++.|.|++++- -+++++... +... ..++.+. .++ ..++|++++. . +|..
T Consensus 392 ~~~~~~~~gg~~G~~l~~A~G~a~a~~~~~vv~~~G-DG~~~~~~~~l~-~a~--------~~~l~~~ivv~nN~~~~~~ 461 (528)
T 1q6z_A 392 PGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAVIG-DGSANYSISALW-TAA--------QYNIPTIFVIMNNGTYGAL 461 (528)
T ss_dssp SSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEEEE-HHHHTTTGGGHH-HHH--------HHTCCCEEEEEECSBCHHH
T ss_pred CCcEECCCCccccchHHHHHHHHHhCCCCcEEEEEC-CcHHHhhHHHHH-HHH--------HhCCCeEEEEEeCCcchHh
Confidence 56777632 12224567778887763 356666544 4432 2233332 233 2567776654 2 2221
Q ss_pred CC----------CCCc-chHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 156 AG----------VGAQ-HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 ~~----------~G~t-Hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.. .+.. |..++..+.+.. |+..+...+.+|+...++++++.++|++|-
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 520 (528)
T 1q6z_A 462 RWFAGVLEAENVPGLDVPGIDFRALAKGY-GVQALKADNLEQLKGSLQEALSAKGPVLIE 520 (528)
T ss_dssp HHHHHHHTCCSCCSCBCCCCCHHHHHHHH-TCEEEEESSHHHHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCcEEEE
Confidence 10 0111 222333444443 667778889999999999999989999884
No 82
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=59.41 E-value=35 Score=35.07 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=39.1
Q ss_pred cccC-EEEEeC-CCC--CCCCCCcchHHHHHHHccCCCcEEEeeC---CHHHHHHHHHHHHhCCCCEEEEe
Q 017487 142 ISVP-IVFRGP-NGA--AAGVGAQHSHCYAAWYASVPGLKVLSPY---SSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 142 ~~~p-vv~~~~-~G~--~~~~G~tHs~~~~a~~~~iP~~~V~~P~---d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
.++| ++++.. .+. ++..+.....+....++.. ||.++-+. |..++...++.|.+.++|++|..
T Consensus 177 ~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~ 246 (651)
T 2e6k_A 177 WGLSKLIVFWDDNRISIDGPTDLAFTEDVLARYRAY-GWQTLRVEDVNDLEALRKAIKLAKLDERPTLIAV 246 (651)
T ss_dssp TTCTTEEEEEEECCEETTEEGGGTCCSCHHHHHHHT-TCEEEEESCTTCHHHHHHHHHHHHHSSSCEEEEE
T ss_pred cCCCeEEEEEECCCcccccccccccCccHHHHHHhC-CCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 5777 666653 332 2211111122334566665 88888343 79999999999988889998853
No 83
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=58.88 E-value=50 Score=34.06 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=39.7
Q ss_pred cccC-EEEEeC-CCCCCCCCCcc---hHHHHHHHccCCCcEEE-ee---CCHHHHHHHHHHHHh-CCCCEEEEe
Q 017487 142 ISVP-IVFRGP-NGAAAGVGAQH---SHCYAAWYASVPGLKVL-SP---YSSEDARGLLKAAIR-DPDPVVFLE 205 (370)
Q Consensus 142 ~~~p-vv~~~~-~G~~~~~G~tH---s~~~~a~~~~iP~~~V~-~P---~d~~e~~~~l~~a~~-~~~Pv~i~~ 205 (370)
.++| ++++.. .+.+ -+|++. ..+....+++. ||.++ .- .|..++...++.|.+ .++|++|..
T Consensus 175 ~~L~~li~i~d~N~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~l~~Al~~A~~~~~~P~lI~~ 246 (673)
T 1r9j_A 175 LALEKLIVIYDSNYIS-IDGSTSLSFTEQCHQKYVAM-GFHVIEVKNGDTDYEGLRKALAEAKATKGKPKMIVQ 246 (673)
T ss_dssp HTCTTEEEEEEECSBC-SSSBGGGTCCCCHHHHHHHT-TCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred hCCCcEEEEEECCCCc-cccchhhccCHhHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5676 666653 3332 122222 22334567764 89888 44 688999999999987 679998854
No 84
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=58.63 E-value=28 Score=35.99 Aligned_cols=86 Identities=10% Similarity=0.072 Sum_probs=48.9
Q ss_pred eeEEEcccchHHH---HHHHHHHHHhhhccccCCCCcccC-EEEEeC-CCC--CCCCCCcchHHHHHHHccCCCcEEEee
Q 017487 109 KPVVEFMTFNFSM---QAIDHIINSAAKSNYMSSGQISVP-IVFRGP-NGA--AAGVGAQHSHCYAAWYASVPGLKVLSP 181 (370)
Q Consensus 109 rp~~~t~~~~f~~---ra~dqi~~~~a~~~~~~~g~~~~p-vv~~~~-~G~--~~~~G~tHs~~~~a~~~~iP~~~V~~P 181 (370)
+.+++... +... ..++.+. .++ ..++| ++++.. .+. .+..+.....++...+++. ||.++-+
T Consensus 149 ~~v~~i~G-DG~l~eG~~~Eal~-~A~--------~~~L~~livi~dnN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~ 217 (663)
T 3kom_A 149 HHTYVFLG-DGCLMEGVSHEACS-LAG--------TLGLNKLVAFWDDNNISIDGDTKGWFSDNTPERFRAY-GWHVIEN 217 (663)
T ss_dssp CCEEEEEC-HHHHHSHHHHHHHH-HHH--------HHTCTTEEEEEEECC-----CGGGTCCCCHHHHHHHT-TCEEEEE
T ss_pred CeEEEEEC-chhhhhchHHHHHH-HHH--------HhCCCeEEEEEECCCcccccchhhhcchhHHHHHHHC-CCeEEEE
Confidence 44555544 5543 3455543 344 35777 555443 332 2221112223334667765 8888733
Q ss_pred ---CCHHHHHHHHHHHHh-CCCCEEEEe
Q 017487 182 ---YSSEDARGLLKAAIR-DPDPVVFLE 205 (370)
Q Consensus 182 ---~d~~e~~~~l~~a~~-~~~Pv~i~~ 205 (370)
.|..++...++.|.+ .++|++|..
T Consensus 218 vdG~d~~~l~~al~~A~~~~~~P~lI~~ 245 (663)
T 3kom_A 218 VDGHDFVAIEKAINEAHSQQQKPTLICC 245 (663)
T ss_dssp EETTCHHHHHHHHHHHHHCSSSCEEEEE
T ss_pred EcCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 378999999999988 589999854
No 85
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=58.61 E-value=19 Score=28.22 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC
Q 017487 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~ 290 (370)
+....+.+|.+.|+++|+..+++|+.. .|.+.+.+.+.+++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~el~~~l~~~ 49 (120)
T 3l78_A 8 PSCTSCRKARAWLNRHDVVFQEHNIMT-SPLSRDELLKILSYT 49 (120)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEeccc-CCCcHHHHHHHHhhc
Confidence 556788899999999999999999875 688999998888754
No 86
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=58.07 E-value=18 Score=28.53 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017487 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
.....+.+|.+.|+++|+..+++|+.. .|.+.+.|.+.+++.+
T Consensus 11 ~~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 53 (120)
T 3fz4_A 11 PKCSTCRRAKAELDDLAWDYDAIDIKK-NPPAASLIRNWLENSG 53 (120)
T ss_dssp SSCHHHHHHHHHHHHHTCCEEEEETTT-SCCCHHHHHHHHHHSC
T ss_pred CCChHHHHHHHHHHHcCCceEEEEecc-CchhHHHHHHHHHHcC
Confidence 556788899999999999999999875 7999999998888764
No 87
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=57.63 E-value=56 Score=25.83 Aligned_cols=104 Identities=8% Similarity=-0.036 Sum_probs=58.6
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHhhccC
Q 017487 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFG 319 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~~~~~ 319 (370)
.++|++.|.......+.++ +.|+ ++.. ..++.+.+.+.+...+ +++.-.. .-|++-.+.+.++-
T Consensus 34 ~l~i~G~g~~~~~~~~~~~---~~~~-----~v~~-g~~~~~~~~~~~~~ad-v~v~ps~--~e~~~~~~~Eama~---- 97 (166)
T 3qhp_A 34 VLLLKGKGPDEKKIKLLAQ---KLGV-----KAEF-GFVNSNELLEILKTCT-LYVHAAN--VESEAIACLEAISV---- 97 (166)
T ss_dssp EEEEECCSTTHHHHHHHHH---HHTC-----EEEC-CCCCHHHHHHHHTTCS-EEEECCC--SCCCCHHHHHHHHT----
T ss_pred EEEEEeCCccHHHHHHHHH---HcCC-----eEEE-eecCHHHHHHHHHhCC-EEEECCc--ccCccHHHHHHHhc----
Confidence 4667777766554444333 3355 3334 5667888888888876 4554433 35677777887763
Q ss_pred CCCC-CEEEEe---cCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhcc
Q 017487 320 YLDA-PVERIA---GADVPMPYAANLERMAVPQVEDIVRAAKRACYRS 363 (370)
Q Consensus 320 ~l~~-~~~~ig---~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l~~~ 363 (370)
+. |+.... ...........+ ...-|++++++++.+++...
T Consensus 98 --G~vPvi~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~i~~l~~~~ 141 (166)
T 3qhp_A 98 --GIVPVIANSPLSATRQFALDERSL--FEPNNAKDLSAKIDWWLENK 141 (166)
T ss_dssp --TCCEEEECCTTCGGGGGCSSGGGE--ECTTCHHHHHHHHHHHHHCH
T ss_pred --CCCcEEeeCCCCchhhhccCCceE--EcCCCHHHHHHHHHHHHhCH
Confidence 44 664411 111111111110 01238899999999988643
No 88
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=56.94 E-value=29 Score=29.79 Aligned_cols=60 Identities=12% Similarity=-0.047 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017487 252 LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 252 ~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
.+..+++.+++.|.+++++|+.. +.|.+.+.+.+...+.||+.=- ...+++...+..++-
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~--~~d~~~~~~~l~~AD~iV~~~P-~y~~s~pa~LK~~iD 94 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS--DYDVKAEVQNFLWADVVIWQMP-GWWMGAPWTVKKYID 94 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS--CCCHHHHHHHHHHCSEEEEEEE-CBTTBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc--cccHHHHHHHHHhCCEEEEECC-ccccCCCHHHHHHHH
Confidence 34456667777799999999874 6788888888888887655443 335888887777664
No 89
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=56.77 E-value=28 Score=35.55 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=24.2
Q ss_pred CcEEE---eeCCHHHHHHHHHHHHhCCCCEEEEe
Q 017487 175 GLKVL---SPYSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 175 ~~~V~---~P~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
|+..+ ...|..++...++.+.+.++|++|-.
T Consensus 252 G~~~~g~vdG~d~~~l~~al~~A~~~~~P~lI~v 285 (629)
T 2o1x_A 252 GVRYVGPVDGHNVQELVWLLERLVDLDGPTILHI 285 (629)
T ss_dssp TCEEEEEEESSCHHHHHHHHHHHTTSSSEEEEEE
T ss_pred CCeEEeeECCcCHHHHHHHHHHHHhcCCCEEEEE
Confidence 45544 44589999999999988889998853
No 90
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=56.37 E-value=12 Score=37.66 Aligned_cols=111 Identities=21% Similarity=0.160 Sum_probs=64.1
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017487 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA- 155 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~- 155 (370)
|.+|+..+- +=-..++.|.|++++- -+++++... +.. +..+..+ ..++ ..++|++++. . +|..
T Consensus 410 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~G-DG~~~~~~~~L-~ta~--------~~~l~~~ivv~nN~~~~~ 479 (566)
T 1ozh_A 410 ARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSG-DGGFLQSSMEL-ETAV--------RLKANVLHLIWVDNGYNM 479 (566)
T ss_dssp CSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEE-HHHHHHHTTHH-HHHH--------HHTCCEEEEEEECSBCHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEc-ChHHhccHHHH-HHHH--------HhCCCcEEEEEECCchhH
Confidence 678876331 1123567778887763 355665544 443 2233333 2333 3578876665 2 2221
Q ss_pred -C---------CCCC-cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 156 -A---------GVGA-QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 -~---------~~G~-tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+ ..+. .+..++..+.+.. |+..+...+.+|+...++++++.++|++|-
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 538 (566)
T 1ozh_A 480 VAIQEEKKYQRLSGVEFGPMDFKAYAESF-GAKGFAVESAEALEPTLRAAMDVDGPAVVA 538 (566)
T ss_dssp HHHHHHHHHSSCCSCBCCCCCHHHHHHTT-TSEEEECCSGGGHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHHhcCCCccCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0 0111 1222333455554 777888899999999999999989999884
No 91
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=55.99 E-value=21 Score=32.72 Aligned_cols=65 Identities=11% Similarity=-0.022 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEeccccCC-------C--HHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017487 249 IVGLSLKAAEILAKEGISAEVINLRSIRPL-------D--RSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~-------d--~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
....+..+++.+++.|++++++|+..+..+ + ...+.+.+...+.||++=- ..+|++...+..++-
T Consensus 74 T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP-~Yn~sipg~LKn~ID 147 (279)
T 2fzv_A 74 SRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSP-ERHGQITSVMKAQID 147 (279)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEE-EETTEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcC-ccccCcCHHHHHHHH
Confidence 344566677788888999999999886422 2 2346667777776655432 235888888777764
No 92
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=55.20 E-value=31 Score=28.79 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHHHHhc------CCceeEEEecc--ccCCCH--------------------HHHHHHHhcCCeEEEEec
Q 017487 247 SKIVGLSLKAAEILAKE------GISAEVINLRS--IRPLDR--------------------STINASVRKTNRLVTVEE 298 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~------Gi~v~Vi~~~~--l~P~d~--------------------~~i~~~~~~~~~vvvvEe 298 (370)
|.....+...++.|++. |.+++++|+.. +.|++. +.+.+.+..++.||+.=-
T Consensus 14 ~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP 93 (191)
T 1t0i_A 14 RVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTP 93 (191)
T ss_dssp CSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEE
T ss_pred CchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEec
Confidence 44455566667777765 78999999886 433322 245566777776655433
Q ss_pred CCCCCChHHHHHHHHHh
Q 017487 299 GFPQHGVGAEICASVIE 315 (370)
Q Consensus 299 ~~~~GGlg~~i~~~l~~ 315 (370)
...+++...+..++..
T Consensus 94 -~y~~~~p~~lK~~iD~ 109 (191)
T 1t0i_A 94 -QYNWGYPAALKNAIDR 109 (191)
T ss_dssp -CBTTBCCHHHHHHHHT
T ss_pred -eECCCCCHHHHHHHHH
Confidence 2357777777777643
No 93
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=53.85 E-value=21 Score=27.80 Aligned_cols=61 Identities=5% Similarity=0.049 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHH--HHHHHHh
Q 017487 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAE--ICASVIE 315 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~--i~~~l~~ 315 (370)
|+.-..|...++.|++.|++++++++... |.+ .+.+++.+++.=-- ..+|.... +..++..
T Consensus 11 GnT~~~a~~i~~~l~~~g~~v~~~~~~~~---~~~----~l~~~d~vi~g~p~-y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 11 GNTEAMANEIEAAVKAAGADVESVRFEDT---NVD----DVASKDVILLGCPA-MGSEELEDSVVEPFFTD 73 (137)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEETTSC---CHH----HHHTCSEEEEECCC-BTTTBCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCeEEEEEcccC---CHH----HHhcCCEEEEEccc-cCCCCCCHHHHHHHHHH
Confidence 55555666667777788999999986653 333 24567776665433 33555444 5555543
No 94
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=53.64 E-value=35 Score=29.21 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCceeEEEeccccC---CCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHh
Q 017487 253 SLKAAEILAKEGISAEVINLRSIRP---LDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 253 al~Aa~~L~~~Gi~v~Vi~~~~l~P---~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~ 315 (370)
+...++.+++.|.+++++|+..+.| .|.+.+.+.+...+.||+.= -...+++.+.+..++-.
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~-P~y~~~~pa~lK~~iDr 83 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQF-PIYWFNCPPLLKQWLDE 83 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEE-ECBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEc-ChhhcCCCHHHHHHHHH
Confidence 4445566777799999999998765 56666777788888776553 33458888888877754
No 95
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=53.27 E-value=16 Score=28.41 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017487 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
+....+.+|.+.|+++|+..+++|+.. .|++.+.+.+.+++.+
T Consensus 8 ~~C~~C~kak~~L~~~gi~~~~~di~~-~~~~~~~l~~~~~~~g 50 (114)
T 1rw1_A 8 KACDTMKKARTWLDEHKVAYDFHDYKA-VGIDREHLRRWCAEHG 50 (114)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEEHHH-HCCCHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHCCCceEEEeecC-CCCCHHHHHHHHHhCC
Confidence 566788899999999999999999874 6888898888776554
No 96
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=53.09 E-value=16 Score=28.80 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=37.0
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017487 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
-.....+.+|.+.|+++|+..+++|+.. .|...+.|.+.+++.+
T Consensus 11 ~p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 54 (120)
T 3gkx_A 11 YPACSTCQKAKKWLIENNIEYTNRLIVD-DNPTVEELKAWIPLSG 54 (120)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCEEEETTT-TCCCHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHcCCceEEEeccc-CcCCHHHHHHHHHHcC
Confidence 3566788899999999999999999875 7889999988887554
No 97
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=52.76 E-value=21 Score=28.42 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=47.3
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-cCCeEEEEecCCCC--CChHHHHHHHHHhhc-cCCC
Q 017487 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-KTNRLVTVEEGFPQ--HGVGAEICASVIEES-FGYL 321 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-~~~~vvvvEe~~~~--GGlg~~i~~~l~~~~-~~~l 321 (370)
+|++-..|...++.|++.|++++++++....+-+ +. +++.+++.=-.+-. |.+...+..++..-. ....
T Consensus 12 tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~-------l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~ 84 (148)
T 3f6r_A 12 TGNTESIAQKLEELIAAGGHEVTLLNAADASAEN-------LADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLA 84 (148)
T ss_dssp SSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCTT-------TTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCT
T ss_pred CchHHHHHHHHHHHHHhCCCeEEEEehhhCCHhH-------hcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCC
Confidence 4566666777777788889999999987654322 23 56666655433333 566767777765421 0111
Q ss_pred CCCEEEEecCC
Q 017487 322 DAPVERIAGAD 332 (370)
Q Consensus 322 ~~~~~~ig~~d 332 (370)
+.++.-+|.-|
T Consensus 85 ~k~~~vfg~G~ 95 (148)
T 3f6r_A 85 GRKVAAFASGD 95 (148)
T ss_dssp TCEEEEEEEEC
T ss_pred CCEEEEEEeCC
Confidence 34555665533
No 98
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=52.10 E-value=45 Score=33.55 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=64.4
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC-
Q 017487 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA- 155 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~- 155 (370)
|.+|++.|- +=-..+++|.|++++. -+++++... +... ..+..+ +.++ ..++|++++. . .|..
T Consensus 416 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~G-DGs~~~~~~~L-~ta~--------~~~l~~~ivv~NN~~~~~ 485 (590)
T 1ybh_A 416 PRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDG-DGSFIMNVQEL-ATIR--------VENLPVKVLLLNNQHLGM 485 (590)
T ss_dssp TTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEE-HHHHHHTTTHH-HHHH--------HTTCCEEEEEEECSBCHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEc-cchhhccHHHH-HHHH--------HhCCCcEEEEEECCcchH
Confidence 788998753 2233678888888763 356666644 4432 233332 2333 3578866654 2 2221
Q ss_pred ---------CC------CCCcc-----hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 156 ---------AG------VGAQH-----SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 ---------~~------~G~tH-----s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
++ .+..| ..++..+.+.. |+..+...+.+|+...++.+++.++|++|-
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 553 (590)
T 1ybh_A 486 VMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAAC-GIPAARVTKKADLREAIQTMLDTPGPYLLD 553 (590)
T ss_dssp HHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHT-TCCEEEECBHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHHhcCCccccccccccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 00 01100 12333444443 455566789999999999999989999884
No 99
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=52.10 E-value=18 Score=26.60 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh--c-CCeEEEEecCCCCCChHH
Q 017487 254 LKAAEILAKEGISAEVINLRSIRPLDRSTINASVR--K-TNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 254 l~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~--~-~~~vvvvEe~~~~GGlg~ 307 (370)
.+|.+.|+++|+..+.+|+..- |-..+.+.+... . +=+.|++++.. .||+..
T Consensus 22 ~~ak~~L~~~~i~~~~~di~~~-~~~~~~l~~~~g~~~~~vP~ifi~g~~-igG~d~ 76 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLVDISQD-NALRDEMRTLAGNPKATPPQIVNGNHY-CGDYEL 76 (93)
T ss_dssp HHHHHHHHHTTCCCEEEETTSC-HHHHHHHHHHTTCTTCCSCEEEETTEE-EEEHHH
T ss_pred HHHHHHHHHCCCceEEEECCCC-HHHHHHHHHHhCCCCCCCCEEEECCEE-EeCHHH
Confidence 6788889999999999998742 211223433332 1 22567777654 588765
No 100
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=52.09 E-value=55 Score=33.74 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=49.0
Q ss_pred eeEEEcccchHH-H--HHHHHHHHHhhhccccCCCCccc-CEEEEeC-CCC--CCCCCCcchHHHHHHHccCCCcEEEee
Q 017487 109 KPVVEFMTFNFS-M--QAIDHIINSAAKSNYMSSGQISV-PIVFRGP-NGA--AAGVGAQHSHCYAAWYASVPGLKVLSP 181 (370)
Q Consensus 109 rp~~~t~~~~f~-~--ra~dqi~~~~a~~~~~~~g~~~~-pvv~~~~-~G~--~~~~G~tHs~~~~a~~~~iP~~~V~~P 181 (370)
+.+++... +.. + ..++.+. .++ ..++ +++++.. .+. .+..+.....+....+++. ||.++.+
T Consensus 160 ~~v~~i~G-DG~~~eG~~~Eal~-~A~--------~~~L~~li~i~~nN~~~i~~~~~~~~~~d~~~~~~a~-G~~~~~~ 228 (675)
T 1itz_A 160 HYTYVILG-DGCQMEGIANEACS-LAG--------HWGLGKLIAFYDDNHISIDGDTEIAFTEDVSTRFEAL-GWHTIWV 228 (675)
T ss_dssp CCEEEEEC-HHHHHSHHHHHHHH-HHH--------HTTCTTEEEEEEECSEETTEEGGGTCCSCHHHHHHHT-TCEEEEE
T ss_pred CEEEEEEC-HhHhchhHHHHHHH-HHH--------HhCCCcEEEEEECCCccCCCChhhhcChhHHHHHHhC-CCEEEEE
Confidence 34444444 543 3 3556553 344 2566 5666653 332 2211111222334566665 8888844
Q ss_pred -C---CHHHHHHHHHHHHh-CCCCEEEEe
Q 017487 182 -Y---SSEDARGLLKAAIR-DPDPVVFLE 205 (370)
Q Consensus 182 -~---d~~e~~~~l~~a~~-~~~Pv~i~~ 205 (370)
. |..++..+++.|.+ .++|++|..
T Consensus 229 vdG~~d~~~l~~al~~a~~~~~~P~lI~~ 257 (675)
T 1itz_A 229 KNGNTGYDDIRAAIKEAKAVTDKPTLIKV 257 (675)
T ss_dssp SCTTTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred ecCCCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 3 78899999999987 589998854
No 101
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=51.55 E-value=17 Score=36.46 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=63.9
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccCCeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCCCC
Q 017487 83 PERVLDTPI--TEAGFTGIGVGAAYYGLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAAAG 157 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~~~ 157 (370)
|.++++.|. +=-..++.|.|++++.-++++.... +... ..+..+ ..+. ..++|++++. .+|....
T Consensus 411 p~~~~~~g~~g~~G~~l~~AiGaa~a~~~~vv~i~G-DGsf~~~~~el-~ta~--------~~~l~~~ivv~NN~~~~~~ 480 (564)
T 2q28_A 411 PRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEG-DSAFGFSGMEI-ETIC--------RYNLPVTIVIFNNGGIYRG 480 (564)
T ss_dssp SSCEEESTTTTCTTCHHHHHHHHHHHHCSCEEEEEE-HHHHHTTGGGH-HHHH--------HTTCCEEEEEEECSBSSCS
T ss_pred CCeEecCCCCCcccchHHHHHHHhhcCCCcEEEEEc-chHhhccHHHH-HHHH--------HhCCCeEEEEEeCchhHHH
Confidence 778887543 1223577888888774456665544 4432 122222 2333 3578877665 3342111
Q ss_pred C-------C---C---cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 158 V-------G---A---QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 158 ~-------G---~---tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
. + . .|..++..+.+.. |+.-+...+++|+...++++++.++|++|-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lie 539 (564)
T 2q28_A 481 DGVDLSGAGAPSPTDLLHHARYDKLMDAF-RGVGYNVTTTDELRHALTTGIQSRKPTIIN 539 (564)
T ss_dssp CCCCTTSSCCCCTTBCCTTCCGGGGGGGG-TCEEEEECSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHhccCCccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1 1 0 1111222333333 677778899999999999999888999884
No 102
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=51.43 E-value=94 Score=25.02 Aligned_cols=108 Identities=14% Similarity=0.106 Sum_probs=62.1
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCceeEEEeccccCCC--HHHHHHHHhc-----C-CeEEEEecCCCCCChHHHHH
Q 017487 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLD--RSTINASVRK-----T-NRLVTVEEGFPQHGVGAEIC 310 (370)
Q Consensus 240 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d--~~~i~~~~~~-----~-~~vvvvEe~~~~GGlg~~i~ 310 (370)
.++|++.|. ......++++.+-.+ -.+..+|+.-=...+ .+.+.+.+++ . +-++.+|- |... .++
T Consensus 6 giiIvtHG~s~A~~l~~~a~~i~G~-~~~~aid~~~~~~~~~~~~~i~~~i~~~~~d~g~GVLiL~Dm----GSp~-n~a 79 (139)
T 3gdw_A 6 GVFVLMHGDSTASSMLKTAQELLGT-SIGTAMNMPLTMEVQTMYEQLRNQVITQKESLNNGILLLTDM----GSLN-SFG 79 (139)
T ss_dssp EEEEEEESSSHHHHHHHHHHHHHTC-CCCEEEEECTTSCHHHHHHHHHHHHHTSTGGGTTCEEEEECS----GGGG-GHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHHcCc-ccEEEEEccCCCCHHHHHHHHHHHHHhhcCCCCCCEEEEEeC----CCHH-HHH
Confidence 488999999 888888999987654 567777765322222 2345666654 2 24566664 4332 234
Q ss_pred HHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 017487 311 ASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 357 (370)
Q Consensus 311 ~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~ 357 (370)
..+.++. +.++..+...+.|.--........+.+-++|++.+.
T Consensus 80 ~~l~~~~----~~~v~vI~gvnlpmllea~~~~~~~~~L~el~~~~~ 122 (139)
T 3gdw_A 80 NMLFEET----GIRTKAITMTSTMIVLEAIRMASVGRSLEDIYQNIQ 122 (139)
T ss_dssp HHHHHHH----CCCEEEECSCCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhh----CCCEEEEeCCCHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 4444331 235666766554321111112235778999998883
No 103
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=50.49 E-value=18 Score=28.48 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017487 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
.....+.+|.+.|+++|+..+++|+.. .|.+.+.|.+.+++.+
T Consensus 13 p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~~~~eL~~~l~~~g 55 (121)
T 3rdw_A 13 PRCSKSRETLALVEQQGITPQVVLYLE-TPPSVDKLKELLQQLG 55 (121)
T ss_dssp TTCHHHHHHHHHHHTTTCCCEEECTTT-SCCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeecc-CCCcHHHHHHHHHhcC
Confidence 566788899999999999999999876 7999999988888765
No 104
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=49.25 E-value=4.7 Score=32.31 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=29.4
Q ss_pred eeeCCcEEEEEechhHH--HHHHHHHHHHhcCCceeEEEec
Q 017487 235 EREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 235 l~~g~dv~Iia~G~~~~--~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
+.++.|++||++|.... .--+..+.|+++||.+++.|-.
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~ 98 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTE 98 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHH
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHH
Confidence 44567999999996554 3445667899999999998744
No 105
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=49.15 E-value=21 Score=36.21 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=64.7
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCC-
Q 017487 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA- 155 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~- 155 (370)
|.+|++.|- .--..+++|.|+|++- -+++++... +... ..+..+ +.++ ..++|++++. .+|..
T Consensus 432 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~G-DGs~~~~~~~L-~ta~--------~~~l~~~ivv~NN~~~~~ 501 (616)
T 2pan_A 432 DRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISG-DFDFQFLIEEL-AVGA--------QFNIPYIHVLVNNAYLGL 501 (616)
T ss_dssp TTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEE-HHHHHHTGGGH-HHHH--------HTTCCCEEEEEECSBCHH
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEc-chhhhCCHHHH-HHHH--------HhCCCeEEEEEECCcchH
Confidence 678999754 1233778888888763 356666654 4442 223332 2233 3567875554 22221
Q ss_pred --------CC--------CCC---cc---hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEE
Q 017487 156 --------AG--------VGA---QH---SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFL 204 (370)
Q Consensus 156 --------~~--------~G~---tH---s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~ 204 (370)
.+ .+. .| ..++..+.+.. |+..+...+..|+...++.+++ .++|++|-
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lIe 575 (616)
T 2pan_A 502 IRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVE 575 (616)
T ss_dssp HHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHT-TCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHc-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEEE
Confidence 00 011 11 12233455554 6677777899999999999998 78999884
No 106
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=48.54 E-value=28 Score=30.22 Aligned_cols=55 Identities=20% Similarity=0.246 Sum_probs=37.3
Q ss_pred CCcEEEEEechhH----HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEE
Q 017487 238 GKDVTITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT 295 (370)
Q Consensus 238 g~dv~Iia~G~~~----~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvv 295 (370)
+..+++|.|++.. .......+.|++-|+++.++++.. -+.+.+.+.+.+.+.|++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~---~~~~~~~~~l~~ad~I~l 85 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT---ESLGEITTKLRKNDFIYV 85 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT---SCHHHHHHHHHHSSEEEE
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC---CChHHHHHHHHhCCEEEE
Confidence 5789999988752 233345555666699988887665 355666677778877654
No 107
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=48.14 E-value=22 Score=30.30 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=47.0
Q ss_pred cEEEEE---echhHHHHHHHHHHHHhcCCceeEEEeccccCC-----------------CH-HHHHHHHhcCCeEEEEec
Q 017487 240 DVTITA---FSKIVGLSLKAAEILAKEGISAEVINLRSIRPL-----------------DR-STINASVRKTNRLVTVEE 298 (370)
Q Consensus 240 dv~Iia---~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~-----------------d~-~~i~~~~~~~~~vvvvEe 298 (370)
+++||. +|++-..|..+++.|++.|.+++++|+....|. |. +.+.+.+..++.||+.=-
T Consensus 8 kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gsP 87 (211)
T 1ydg_A 8 KLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSSP 87 (211)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEEE
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEcC
Confidence 344443 355666677778888888999999998775110 11 123345666776655433
Q ss_pred CCCCCChHHHHHHHHHh
Q 017487 299 GFPQHGVGAEICASVIE 315 (370)
Q Consensus 299 ~~~~GGlg~~i~~~l~~ 315 (370)
...|++...+..++..
T Consensus 88 -~y~~~~~~~lk~~ld~ 103 (211)
T 1ydg_A 88 -TRFGGATSQMRAFIDT 103 (211)
T ss_dssp -EETTEECHHHHHHHHT
T ss_pred -ccccCccHHHHHHHHH
Confidence 3457888888777754
No 108
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=47.90 E-value=8.8 Score=39.03 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=55.9
Q ss_pred HHHHHHHHHhccCCeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe-C-CCCC--CCC-CC--------
Q 017487 95 GFTGIGVGAAYYGLKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG-P-NGAA--AGV-GA-------- 160 (370)
Q Consensus 95 ~~v~~A~GlA~~G~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~-~G~~--~~~-G~-------- 160 (370)
..++.|.|++++--+++++... +... ..+..+ ..++ ..++|++++. . +|.. ... +.
T Consensus 459 ~~l~~AiGaala~~~~vv~i~G-DGsf~~~~~eL-~ta~--------~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~ 528 (604)
T 2x7j_A 459 GVVSSAMGVCEGTKAPVTLVIG-DLSFYHDLNGL-LAAK--------KLGIPLTVILVNNDGGGIFSFLPQASEKTHFED 528 (604)
T ss_dssp SHHHHHHHHHHHHTSCEEEEEE-HHHHHHTGGGG-HHHH--------HHCCCEEEEEEECSSCGGGGGSGGGSCHHHHHH
T ss_pred cHHHHHHHHHhcCCCcEEEEEc-cHHHHhHHHHH-HHhh--------hcCCCeEEEEEeCCCCcccccCCCCccchhhHh
Confidence 4677888888774466666544 4432 222222 2233 3678877665 2 2321 100 00
Q ss_pred ----cchHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 161 ----QHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 161 ----tHs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.|..++..+.+.. |+..+...+.+|+...++++++.++|++|-
T Consensus 529 ~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 575 (604)
T 2x7j_A 529 LFGTPTGLDFKHAAALY-GGTYSCPASWDEFKTAYAPQADKPGLHLIE 575 (604)
T ss_dssp HTTCCCCCCTHHHHHHT-TCEEECCSSHHHHHHHCCCCCSSCCEEEEE
T ss_pred hccCCCCCCHHHHHHHc-CCeEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 0111122333333 678888899999999998888778898873
No 109
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=47.87 E-value=15 Score=30.96 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=24.3
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
.||+||+-|..= +.+|-.|.+.|++|.|++-
T Consensus 3 ~dV~IIGaGpaG---L~aA~~La~~G~~V~v~Ek 33 (336)
T 3kkj_A 3 VPIAIIGTGIAG---LSAAQALTAAGHQVHLFDK 33 (336)
T ss_dssp CCEEEECCSHHH---HHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHH---HHHHHHHHHCCCCEEEEEC
Confidence 489999999543 2356678889999999984
No 110
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=47.69 E-value=24 Score=27.53 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=38.8
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017487 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
++|.+. +....|.+|.+.|+++|+..+++|+.. .|.+.+.+.+.+++.+
T Consensus 7 i~iY~~-~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~~l~~~~~~~g 55 (120)
T 2kok_A 7 VTIYGI-KNCDTMKKARIWLEDHGIDYTFHDYKK-EGLDAETLDRFLKTVP 55 (120)
T ss_dssp EEEEEC-SSCHHHHHHHHHHHHHTCCEEEEEHHH-HCCCHHHHHHHHHHSC
T ss_pred EEEEEC-CCChHHHHHHHHHHHcCCcEEEEeeeC-CCCCHHHHHHHHHHcC
Confidence 455443 555788899999999999999999874 5888898988887765
No 111
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=47.63 E-value=36 Score=28.48 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=44.0
Q ss_pred echhHHHHHHHHHHHHhcCCceeEEEeccccCC----------C----HHHHHHHHhcCCeEEEEecCCCCCChHHHHHH
Q 017487 246 FSKIVGLSLKAAEILAKEGISAEVINLRSIRPL----------D----RSTINASVRKTNRLVTVEEGFPQHGVGAEICA 311 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~----------d----~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~ 311 (370)
+|++-..|..+++.|++.|++++++|+....|. | .+. .+.+.+++.||+.=- ...|++...+..
T Consensus 14 ~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gsP-~y~~~~~~~lk~ 91 (199)
T 2zki_A 14 YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGSP-TRYGNMAGGLKT 91 (199)
T ss_dssp SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEEE-CBTTBCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEECC-ccccCccHHHHH
Confidence 466666677778888888999999999775111 1 111 334556776655443 335888888877
Q ss_pred HHHh
Q 017487 312 SVIE 315 (370)
Q Consensus 312 ~l~~ 315 (370)
++..
T Consensus 92 ~ld~ 95 (199)
T 2zki_A 92 FLDT 95 (199)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7754
No 112
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=47.61 E-value=43 Score=26.56 Aligned_cols=43 Identities=28% Similarity=0.195 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC
Q 017487 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~ 290 (370)
-+....|.+|.+.|++.|+..+++|+.. .|.+.+.+.+.+++.
T Consensus 8 ~~~C~~C~ka~~~L~~~gi~y~~~di~~-~~~~~~el~~~l~~~ 50 (132)
T 1z3e_A 8 SPSCTSCRKARAWLEEHEIPFVERNIFS-EPLSIDEIKQILRMT 50 (132)
T ss_dssp CTTCHHHHHHHHHHHHTTCCEEEEETTT-SCCCHHHHHHHHHTC
T ss_pred CCCChHHHHHHHHHHHcCCceEEEEccC-CCccHHHHHHHHHHc
Confidence 3666888899999999999999999874 688888888887654
No 113
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=47.11 E-value=21 Score=33.97 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=24.6
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEe
Q 017487 172 SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (370)
Q Consensus 172 ~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~ 205 (370)
.+|++.| .-.|+.++...++.|++ .++|++|-.
T Consensus 227 G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe~ 263 (368)
T 1w85_A 227 GIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIET 263 (368)
T ss_dssp TCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4665543 44589999999999986 578999853
No 114
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=46.98 E-value=28 Score=26.34 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=42.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh---c--CCeEEEEecCCCCCChHHH
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR---K--TNRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~---~--~~~vvvvEe~~~~GGlg~~ 308 (370)
.++++++. +..+.|..+.+.|++.|+....+|+....|- .+.+.+.+. . +=+.++++.. ..||+...
T Consensus 19 ~~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~-~~~~~~~l~~~~g~~tvP~ifi~g~-~igG~~~~ 90 (113)
T 3rhb_A 19 NTVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQ-GPQLQKVLERLTGQHTVPNVFVCGK-HIGGCTDT 90 (113)
T ss_dssp SSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTH-HHHHHHHHHHHHSCCSSCEEEETTE-EEESHHHH
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEeecCCCC-hHHHHHHHHHHhCCCCcCEEEECCE-EEcCcHHH
Confidence 34666554 6678888999999999999999998765332 223333232 1 2245666544 46887654
No 115
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=46.89 E-value=32 Score=34.23 Aligned_cols=111 Identities=9% Similarity=-0.022 Sum_probs=59.9
Q ss_pred CCcEeech--hhHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCC-
Q 017487 83 PERVLDTP--ITEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA- 155 (370)
Q Consensus 83 p~r~~~~G--IaE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~- 155 (370)
|.+|+..+ -+=-..+++|.|++++. -+++++... +... ..+..+. .++ ..++|++++. .+|..
T Consensus 398 ~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~G-DG~~~~~~~el~-ta~--------~~~l~~~ivv~nN~~~~~ 467 (552)
T 1ovm_A 398 DVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTG-DGAAQLTIQELG-SML--------RDKQHPIILVLNNEGYTV 467 (552)
T ss_dssp SCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEE-HHHHHHHTTHHH-HHH--------HTTCCCEEEEEESSSCHH
T ss_pred CCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEEC-chHHHhHHHHHH-HHH--------HhCCCCEEEEEECCCCeE
Confidence 45676522 11224567778877763 355555544 4442 2233332 233 2567866654 23321
Q ss_pred -----CCCC---CcchHHHHHHHccCCCc----EEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 156 -----AGVG---AQHSHCYAAWYASVPGL----KVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 -----~~~G---~tHs~~~~a~~~~iP~~----~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+... ..|..++..+.+. -|+ ..+...+.+|+...++.+++.++|++|-
T Consensus 468 ~~~~~~~~~~~~~~~~~d~~~~a~a-~G~~~~~~~~~v~~~~~l~~al~~a~~~~gp~lie 527 (552)
T 1ovm_A 468 ERAIHGAEQRYNDIALWNWTHIPQA-LSLDPQSECWRVSEAEQLADVLEKVAHHERLSLIE 527 (552)
T ss_dssp HHHHSCTTCGGGCCCCCCGGGSTTT-SCSSCCEEEEEECBHHHHHHHHHHHTTCSSEEEEE
T ss_pred EEeeccCCCCcccCCCCCHHHHHHH-hCCCcCCCEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 1100 0111122223333 366 7777889999999999998888998873
No 116
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=46.45 E-value=17 Score=36.60 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=62.8
Q ss_pred CCcEeech-hh-HHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCC-
Q 017487 83 PERVLDTP-IT-EAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA- 155 (370)
Q Consensus 83 p~r~~~~G-Ia-E~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~- 155 (370)
|.+|+..+ .. =-..++.|.|++++. -+++++... +... ..+..+ +.++ ..++|++++. .+|..
T Consensus 426 ~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~G-DG~~~~~~~~L-~~a~--------~~~l~~~ivv~NN~~~~~ 495 (573)
T 2iht_A 426 PFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAG-DGGFHSNSSDL-ETIA--------RLNLPIVTVVVNNDTNGL 495 (573)
T ss_dssp TTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEE-HHHHHHTGGGH-HHHH--------HHTCCCEEEEEECSBCHH
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEc-cHHHHhHHHHH-HHHH--------HhCCCeEEEEEECCcchh
Confidence 67788642 11 123567888888763 355665544 4432 223222 2233 3567765554 22221
Q ss_pred -CC---------CC--Ccc-hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 156 -AG---------VG--AQH-SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 -~~---------~G--~tH-s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+. .+ ... ..++..+.... |+..+...+.+|+...++.+.+.++|++|-
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~lie 556 (573)
T 2iht_A 496 IELYQNIGHHRSHDPAVKFGGVDFVALAEAN-GVDATRATNREELLAALRKGAELGRPFLIE 556 (573)
T ss_dssp HHHHHHHHHSSCCGGGTBCCCCCHHHHHHHT-TCEEEECCSHHHHHHHHHHHHTSSSCEEEE
T ss_pred hHHHHHHhcCCCcCccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEEE
Confidence 10 01 000 11233455554 677778899999999999999888999884
No 117
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=46.31 E-value=33 Score=28.52 Aligned_cols=56 Identities=9% Similarity=0.189 Sum_probs=39.5
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhc-C--CceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC
Q 017487 240 DVTITAFSKIV----GLSLKAAEILAKE-G--ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (370)
Q Consensus 240 dv~Iia~G~~~----~~al~Aa~~L~~~-G--i~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~ 299 (370)
+++|+++|+.. ..-..+++.|+++ . -+++++|.-+.- .+ +...+.+++++|+||--
T Consensus 2 ~ilVlGiGN~l~gDDG~G~~v~~~L~~~~~~p~~v~vid~gt~~---~~-l~~~l~~~d~lIiVDA~ 64 (162)
T 1cfz_A 2 RILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAG---ME-LLGDMANRDHLIIADAI 64 (162)
T ss_dssp CEEEEEESCTTBGGGGHHHHHHHHHHHHEECCTTEEEEEEETCC---GG-GHHHHSSCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCCCCCCeEEEECCCCH---HH-HHHHHhCCCEEEEEEeh
Confidence 47899999774 2355678888764 2 368999999863 22 33456778999999964
No 118
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=46.01 E-value=30 Score=27.40 Aligned_cols=61 Identities=8% Similarity=0.000 Sum_probs=36.1
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCC--hHHHHHHHHH
Q 017487 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHG--VGAEICASVI 314 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GG--lg~~i~~~l~ 314 (370)
|+.-..|...++.|++.|++++++++....+-+ +.+ ++.++++=-.+-.|- +...+..++.
T Consensus 12 Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~-------l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~ 75 (147)
T 1f4p_A 12 GNTEYTAETIARELADAGYEVDSRDAASVEAGG-------LFEGFDLVLLGCSTWGDDSIELQDDFIPLFD 75 (147)
T ss_dssp SHHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTT-------TTTTCSEEEEEECEECSSSCEECTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCeeEEEehhhCCHHH-------hcCcCCEEEEEeCCCCCCCcCCChhHHHHHH
Confidence 455555666666777789999999987764322 445 666665533222233 3445555554
No 119
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=45.82 E-value=7 Score=31.51 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=26.9
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHHhcCCceeEEEec
Q 017487 238 GKDVTITAFSKIVGL-SLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 238 g~dv~Iia~G~~~~~-al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
..|++||++|..... --+..+.|+++||.+++.|-.
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 368999999965422 234567789999999999754
No 120
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=45.21 E-value=6.8 Score=31.97 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=26.6
Q ss_pred CCcEEEEEechhHHH-HHHHHHHHHhcCCceeEEEec
Q 017487 238 GKDVTITAFSKIVGL-SLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 238 g~dv~Iia~G~~~~~-al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
.-|++||++|..... --+..+.|+++||.+++.|-.
T Consensus 67 ~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 67 AIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp SCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 368999999954432 234567788999999999754
No 121
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=44.47 E-value=1.1e+02 Score=28.64 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=41.8
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHh
Q 017487 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~ 315 (370)
|++-..|...++.|+++|++++++++... +.+.+.+.+.+++.|++.=- ...|++...+..++..
T Consensus 268 GnT~~la~~i~~~l~~~g~~v~~~~l~~~---~~~~~~~~l~~~D~iiigsP-~y~~~~~~~~k~fld~ 332 (414)
T 2q9u_A 268 GTTHRMALALLDGARSTGCETVLLEMTSS---DITKVALHTYDSGAVAFASP-TLNNTMMPSVAAALNY 332 (414)
T ss_dssp SHHHHHHHHHHHHHHHTTCEEEEEEGGGC---CHHHHHHHHHTCSEEEEECC-CBTTBCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCeEEEEEcCcC---CHHHHHHHHHhCCEEEEEcC-ccCcCchHHHHHHHHH
Confidence 44455666667777778999999987653 44555556677776655533 3356666666665543
No 122
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=44.12 E-value=65 Score=24.49 Aligned_cols=66 Identities=18% Similarity=0.264 Sum_probs=41.9
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHH----h-cCCeEEEEecCCCCCChHHH
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASV----R-KTNRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~----~-~~~~vvvvEe~~~~GGlg~~ 308 (370)
.+++|++. +..+.|..|.+.|++.|++.+++|+.... +.+.+.+.+ . .+=+.+++.. ...||+...
T Consensus 17 ~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~--~~~~~~~~l~~~~g~~tvP~vfi~g-~~igG~d~l 87 (114)
T 3h8q_A 17 SRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELDQVD--DGARVQEVLSEITNQKTVPNIFVNK-VHVGGCDQT 87 (114)
T ss_dssp CSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETTTST--THHHHHHHHHHHHSCCSSCEEEETT-EEEESHHHH
T ss_pred CCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEecCCC--ChHHHHHHHHHHhCCCccCEEEECC-EEEeCHHHH
Confidence 45766554 66788888999999999999999876531 223333322 2 1224566654 456887653
No 123
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=44.08 E-value=6.8 Score=31.80 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=27.5
Q ss_pred eCCcEEEEEechhHH-HHHHHHHHHHhcCCceeEEEec
Q 017487 237 EGKDVTITAFSKIVG-LSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~-~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
.+.|++||++|.... .--+..+.|+++||.+++.|-.
T Consensus 63 ~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 100 (132)
T 2gm2_A 63 LNPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTNA 100 (132)
T ss_dssp HCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECHH
T ss_pred cCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 457999999996543 2334566788999999999754
No 124
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=43.85 E-value=83 Score=29.47 Aligned_cols=72 Identities=15% Similarity=0.028 Sum_probs=45.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccc-------------cCCCHHHHHHHHhcCCeEEEEecCCCCC
Q 017487 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSI-------------RPLDRSTINASVRKTNRLVTVEEGFPQH 303 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l-------------~P~d~~~i~~~~~~~~~vvvvEe~~~~G 303 (370)
.|+.+.|++.|.... ..++.+++.|+++-++|...- ...|.+.+.+.+++.+ +|+.|-...
T Consensus 13 ~~k~IlIlG~G~~g~---~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~d-vI~~~~e~~-- 86 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGR---MMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISD-VVTYEFENI-- 86 (389)
T ss_dssp TTSEEEEECCSHHHH---HHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCS-EEEESCCCC--
T ss_pred CCCEEEEECCCHHHH---HHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCC-Eeeeccccc--
Confidence 456799999997544 445556667999999986421 3356677888887765 566664332
Q ss_pred ChHHHHHHHHHhh
Q 017487 304 GVGAEICASVIEE 316 (370)
Q Consensus 304 Glg~~i~~~l~~~ 316 (370)
...+++.+.+.
T Consensus 87 --~~~~~~~l~~~ 97 (389)
T 3q2o_A 87 --DYRCLQWLEKH 97 (389)
T ss_dssp --CHHHHHHHHHH
T ss_pred --cHHHHHHHHhh
Confidence 23445555544
No 125
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=43.81 E-value=68 Score=30.42 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=61.2
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCCcee-EEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChH--HHHHH
Q 017487 236 REGKDVTITAFSKIVGLSLKAAEILAKEGISAE-VINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVG--AEICA 311 (370)
Q Consensus 236 ~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~-Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg--~~i~~ 311 (370)
+.|.|++=++.-. ..+-+|...++++ +++= |.|++ ||....++.++. .++ +-+.-++. |.-. .++.+
T Consensus 57 ~aG~diVRvavp~--~~~a~al~~I~~~-~~vPlvaDiH----f~~~lal~a~e~G~dk-lRINPGNi-g~~~~~~~vv~ 127 (366)
T 3noy_A 57 EAGCEIVRVAVPH--KEDVEALEEIVKK-SPMPVIADIH----FAPSYAFLSMEKGVHG-IRINPGNI-GKEEIVREIVE 127 (366)
T ss_dssp HTTCCEEEEECCS--HHHHHHHHHHHHH-CSSCEEEECC----SCHHHHHHHHHTTCSE-EEECHHHH-SCHHHHHHHHH
T ss_pred HcCCCEEEeCCCC--hHHHHHHHHHHhc-CCCCEEEeCC----CCHHHHHHHHHhCCCe-EEECCccc-CchhHHHHHHH
Confidence 3577777777654 3334566666554 3332 34433 566766666654 555 44444432 3210 24444
Q ss_pred HHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhC-CCHHHHHHHHHHHHh
Q 017487 312 SVIEESFGYLDAPVERIAGADVPMPYAANLERMAV-PQVEDIVRAAKRACY 361 (370)
Q Consensus 312 ~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~g-l~~~~I~~~i~~~l~ 361 (370)
...+++ ...|||++. ++....+.++|+ .+++.+++.+.+..+
T Consensus 128 ~ak~~~------~piRIGvN~--GSL~~~ll~~yg~~~~eamVeSAl~~~~ 170 (366)
T 3noy_A 128 EAKRRG------VAVRIGVNS--GSLEKDLLEKYGYPSAEALAESALRWSE 170 (366)
T ss_dssp HHHHHT------CEEEEEEEG--GGCCHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHcC------CCEEEecCC--cCCCHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 555543 356898753 333345555555 899999999888764
No 126
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=43.78 E-value=16 Score=28.70 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC
Q 017487 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN 291 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~ 291 (370)
.....+.+|.+.|+++|+..+++|+.. .|.+.+.|.+.+++.+
T Consensus 12 p~C~~c~ka~~~L~~~gi~~~~~di~~-~~~t~~eL~~~l~~~g 54 (119)
T 3f0i_A 12 PKCSKSRETLALLENQGIAPQVIKYLE-TSPSVEELKRLYQQLG 54 (119)
T ss_dssp TTCHHHHHHHHHHHHTTCCCEEECHHH-HCCCHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHcCCceEEEEecc-CcCcHHHHHHHHHHcC
Confidence 556788899999999999999999876 7899998888877654
No 127
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=43.49 E-value=44 Score=27.89 Aligned_cols=60 Identities=12% Similarity=-0.024 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHHHh-cCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017487 247 SKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~-~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
|++-..|...++.|++ .|++++++|+... +.+ .+.+++.||+.=--+ .|++...+..++.
T Consensus 16 GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~---~~~----~l~~aD~ii~gsP~y-~g~~~~~lk~fld 76 (188)
T 2ark_A 16 GNTKKMAELVAEGARSLEGTEVRLKHVDEA---TKE----DVLWADGLAVGSPTN-MGLVSWKMKRFFD 76 (188)
T ss_dssp SHHHHHHHHHHHHHHTSTTEEEEEEETTTC---CHH----HHHHCSEEEEEEECB-TTBCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEEhhhC---CHH----HHHhCCEEEEEeCcc-CCcCCHHHHHHHH
Confidence 4555566667777877 8999999987654 222 223344443332222 4555555555554
No 128
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=43.33 E-value=32 Score=34.47 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=23.9
Q ss_pred EEEeeCCHHHHHHHHHHHHhC-CCCEEEE
Q 017487 177 KVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (370)
Q Consensus 177 ~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~ 204 (370)
..+...+.+|+...++.+++. ++|++|-
T Consensus 508 ~~~~v~~~~el~~al~~a~~~~~gp~lie 536 (568)
T 2wvg_A 508 KGLKAKTGGELAEAIKVALANTDGPTLIE 536 (568)
T ss_dssp EEEEESBHHHHHHHHHHHHHCCSSCEEEE
T ss_pred ceEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 555668999999999999987 8999883
No 129
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=43.23 E-value=12 Score=29.14 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=26.5
Q ss_pred eeCCcEEEEE-ec--hhHHHHHHHHHHHHhcCCceeEE
Q 017487 236 REGKDVTITA-FS--KIVGLSLKAAEILAKEGISAEVI 270 (370)
Q Consensus 236 ~~g~dv~Iia-~G--~~~~~al~Aa~~L~~~Gi~v~Vi 270 (370)
++|.++++++ .| .++....+.++.++++|+++++|
T Consensus 77 ~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~vi 114 (117)
T 3hh1_A 77 EEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPV 114 (117)
T ss_dssp HTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEE
T ss_pred HCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEe
Confidence 5688999999 68 34455566677777889999887
No 130
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=43.22 E-value=27 Score=26.10 Aligned_cols=68 Identities=10% Similarity=0.117 Sum_probs=41.4
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh-----cCCeEEEEecCCCCCChHH
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR-----KTNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~-----~~~~vvvvEe~~~~GGlg~ 307 (370)
.+++|.+ -+..+.|..|...|++.|+..+.+++....+-+.+.+.+.+. .+=+.+++++....||+..
T Consensus 22 ~~v~ly~-~~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~ 94 (103)
T 3nzn_A 22 GKVIMYG-LSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKE 94 (103)
T ss_dssp SCEEEEE-CSSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCH
T ss_pred CeEEEEc-CCCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCH
Confidence 3455543 456678888888999999999999987653322223332222 1125666665244577654
No 131
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=43.19 E-value=33 Score=25.67 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=41.8
Q ss_pred CcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-CCeEEEEecCCCCCChHH
Q 017487 239 KDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-TNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 239 ~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-~~~vvvvEe~~~~GGlg~ 307 (370)
..++|.+.| ...+.|..|...|++.|++...+|+..- |--.+.+.+.... +=+.++++ +...||+..
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~-~~~~~~l~~~~g~~~vP~v~i~-g~~igg~d~ 88 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED-EEVRQGLKAYSNWPTYPQLYVK-GELVGGLDI 88 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEET-TEEEECHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCC-HHHHHHHHHHHCCCCCCeEEEC-CEEEeChHH
Confidence 357787776 5667788888899999999999998751 1111223332222 22455555 445688764
No 132
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=43.02 E-value=28 Score=25.08 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=38.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCH----HHHHHHHh-cCCeEEEEecCCCCCChHH
Q 017487 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDR----STINASVR-KTNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~----~~i~~~~~-~~~~vvvvEe~~~~GGlg~ 307 (370)
+++|.+ ......|.++...|++.|+..+.+|+....+-+. +.+.+... .+=++++++. ...||+..
T Consensus 13 ~v~ly~-~~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g-~~i~G~~~ 83 (92)
T 3ic4_A 13 EVLMYG-LSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGD-KHVLGYNE 83 (92)
T ss_dssp SSEEEE-CTTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETT-EEEESCCH
T ss_pred eEEEEE-CCCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECC-EEEeCCCH
Confidence 355543 3456777888888988899999999876543222 22322222 1224565543 44567643
No 133
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=42.90 E-value=48 Score=27.55 Aligned_cols=66 Identities=11% Similarity=0.108 Sum_probs=40.4
Q ss_pred echhHHHHHHHHHHHHh-cCCceeEEEeccccCCCHHHH--------------HHHHhcCCeEEEEecCCCCCChHHHHH
Q 017487 246 FSKIVGLSLKAAEILAK-EGISAEVINLRSIRPLDRSTI--------------NASVRKTNRLVTVEEGFPQHGVGAEIC 310 (370)
Q Consensus 246 ~G~~~~~al~Aa~~L~~-~Gi~v~Vi~~~~l~P~d~~~i--------------~~~~~~~~~vvvvEe~~~~GGlg~~i~ 310 (370)
+|+.-..|...++.|++ .|++++++|+....| .... .+.+.+++.||+.=- ...|++...+.
T Consensus 12 ~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP-~y~~~~~~~lk 88 (198)
T 3b6i_A 12 YGHIETMARAVAEGASKVDGAEVVVKRVPETMP--PQLFEKAGGKTQTAPVATPQELADYDAIIFGTP-TRFGNMSGQMR 88 (198)
T ss_dssp SSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSC--HHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEE-EETTEECHHHH
T ss_pred CcHHHHHHHHHHHHHhhcCCCEEEEEEccccCc--hhhhhhcccccccCchhhHHHHHHCCEEEEEeC-hhcCCchHHHH
Confidence 35666677777888887 899999999986522 1110 233455665544332 23567766666
Q ss_pred HHHH
Q 017487 311 ASVI 314 (370)
Q Consensus 311 ~~l~ 314 (370)
.++.
T Consensus 89 ~~ld 92 (198)
T 3b6i_A 89 TFLD 92 (198)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
No 134
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=42.74 E-value=12 Score=37.82 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=61.1
Q ss_pred CCcEeec-hhh-HHHHHHHHHHHhccC-CeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe-CCC-CC-
Q 017487 83 PERVLDT-PIT-EAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG-PNG-AA- 155 (370)
Q Consensus 83 p~r~~~~-GIa-E~~~v~~A~GlA~~G-~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~-~~G-~~- 155 (370)
|.+|+.. |.. =-..++.|.|++++. -+++++... +.. +..++.+ ..++ ..++|++++. ..+ ..
T Consensus 414 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~G-DG~~~~~~~~L-~ta~--------~~~l~~~ivv~nN~~~~~ 483 (589)
T 2pgn_A 414 PRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTG-DGALYYHFNEF-RVAV--------EHKLPVITMVFTNESYGA 483 (589)
T ss_dssp TTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEE-HHHHHHHGGGH-HHHH--------HTTCCCEEEEEECSBCHH
T ss_pred CCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEe-eHHHHhhHHHH-HHHH--------HhCCCeEEEEEECCCccc
Confidence 6678874 211 123567888888763 355665544 443 2233332 2333 3567866654 222 21
Q ss_pred -CC------CCC--cc--hHHHHHHHccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 156 -AG------VGA--QH--SHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 156 -~~------~G~--tH--s~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
+. .+. +. ..++..+.+.. |+..+...+.+|+...++++++.++|++|-
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lie 542 (589)
T 2pgn_A 484 NWTLMNHQFGQNNWTEFMNPDWVGIAKAF-GAYGESVRETGDIAGALQRAIDSGKPALIE 542 (589)
T ss_dssp HHHHHHHHHSSCCSCBCCCCCHHHHHHHH-TCEEEECTTTCCHHHHHHHHHHHCSCEEEE
T ss_pred chHHHHhhcCCCccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEEE
Confidence 10 000 11 11222333433 566777789999999999999888999884
No 135
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=41.66 E-value=67 Score=26.48 Aligned_cols=58 Identities=19% Similarity=0.045 Sum_probs=36.7
Q ss_pred cEEEEEechhHH----HHHHHHHHHHhcC-CceeEEEeccccCCCHHHHHHHHhcCCeEEEEecC
Q 017487 240 DVTITAFSKIVG----LSLKAAEILAKEG-ISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEG 299 (370)
Q Consensus 240 dv~Iia~G~~~~----~al~Aa~~L~~~G-i~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~ 299 (370)
+++|+++|+... .-..+++.|+++. -+++++|.-+.-+--...|.+. +.+++|+||--
T Consensus 5 ~~lVlGiGN~l~gDDG~G~~v~~~L~~~~~~~v~vid~gt~~~~l~~~l~~~--~~d~lIiVDA~ 67 (159)
T 2e85_A 5 TDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIREL--RPTRLLIVDAT 67 (159)
T ss_dssp CEEEEEECCGGGGGGGHHHHHHHHHHHSCCTTCEEEECTTCSGGGHHHHHHH--CCSEEEEEEEC
T ss_pred CEEEEEECCcccccccHHHHHHHHHhhhCCCCeEEEECCCCHHHHHHHHhcC--CCCEEEEEEeC
Confidence 468899997752 3556778887652 2588999888643222222211 46888888863
No 136
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=41.05 E-value=23 Score=35.45 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=58.4
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHH-HHHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCC-
Q 017487 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFS-MQAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA- 155 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~-~ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~- 155 (370)
|.+|+..+- +=-..+++|.|++++- -+++++... +.. +..+..+ +.++ ..++|++++. .+|..
T Consensus 399 ~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~G-DG~~~~~~~eL-~ta~--------~~~l~~~ivv~nN~~~~~ 468 (566)
T 2vbi_A 399 GARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVG-DGSFQLTAQEV-AQMV--------RYELPVIIFLINNRGYVI 468 (566)
T ss_dssp TCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEE-HHHHHHHGGGH-HHHH--------HTTCCCEEEEEECSSCHH
T ss_pred CCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEc-chHHHhhHHHH-HHHH--------HhCCCcEEEEEECCcceE
Confidence 456774221 1234567788888763 355555544 443 2223322 2333 2567766554 23321
Q ss_pred -CC--C---CCcchHHHHHHHccCCCc-----EEEeeCCHHHHHHHHHHHHhC-CCCEEEE
Q 017487 156 -AG--V---GAQHSHCYAAWYASVPGL-----KVLSPYSSEDARGLLKAAIRD-PDPVVFL 204 (370)
Q Consensus 156 -~~--~---G~tHs~~~~a~~~~iP~~-----~V~~P~d~~e~~~~l~~a~~~-~~Pv~i~ 204 (370)
.. . +..+..++..+.+.. |+ ..+...+..|+...++.+++. ++|++|-
T Consensus 469 ~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~lie 528 (566)
T 2vbi_A 469 EIAIHDGPYNYIKNWDYAGLMEVF-NAGEGHGLGLKATTPKELTEAIARAKANTRGPTLIE 528 (566)
T ss_dssp HHTTSCCGGGCCCCCCTTTHHHHH-HTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEEE
T ss_pred EEeeccCCccCCCCCCHHHHHHHc-CCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence 11 0 011111222222221 23 566678999999999999987 8999884
No 137
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=40.72 E-value=81 Score=25.02 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=24.2
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
..++|+++|..-.. .++.|.+.|.++.+++..
T Consensus 4 ~~vlI~G~G~vG~~---la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 4 DHFIVCGHSILAIN---TILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHTTCCEEEEECC
T ss_pred CcEEEECCCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 46888888866643 556777889999999874
No 138
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=40.56 E-value=69 Score=33.05 Aligned_cols=62 Identities=16% Similarity=0.106 Sum_probs=37.8
Q ss_pred cccC-EEEEeC-CCCCCCCCCcc---hHHHHHHHccCCCcEEEee-C---CHHHHHHHHHHHHh-CCCCEEEEe
Q 017487 142 ISVP-IVFRGP-NGAAAGVGAQH---SHCYAAWYASVPGLKVLSP-Y---SSEDARGLLKAAIR-DPDPVVFLE 205 (370)
Q Consensus 142 ~~~p-vv~~~~-~G~~~~~G~tH---s~~~~a~~~~iP~~~V~~P-~---d~~e~~~~l~~a~~-~~~Pv~i~~ 205 (370)
.++| ++++.. .+.+ -++++. +.+....++.. ||.++.+ . |..++...++.|.+ .++|++|..
T Consensus 175 ~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~~ 246 (680)
T 1gpu_A 175 LKLGNLIAIYDDNKIT-IDGATSISFDEDVAKRYEAY-GWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKM 246 (680)
T ss_dssp TTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHH-TCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred hCCCcEEEEEECCCce-EecccccccCccHHHHHHhc-CCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEEE
Confidence 5777 666653 3321 111221 12233556654 7888733 3 78999999999988 589998853
No 139
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=39.87 E-value=84 Score=32.31 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=38.1
Q ss_pred cccC-EEEEeC-CCCCCCCCCcc---hHHHHHHHccCCCcEEE-ee--CCHHHHHHHHHHHHh-CCCCEEEEe
Q 017487 142 ISVP-IVFRGP-NGAAAGVGAQH---SHCYAAWYASVPGLKVL-SP--YSSEDARGLLKAAIR-DPDPVVFLE 205 (370)
Q Consensus 142 ~~~p-vv~~~~-~G~~~~~G~tH---s~~~~a~~~~iP~~~V~-~P--~d~~e~~~~l~~a~~-~~~Pv~i~~ 205 (370)
.++| ++++.. .+.+ -++++. ..+....++.. ||.++ .- .|..++...++.+.+ .++|++|..
T Consensus 173 ~~L~~li~i~~nN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 243 (669)
T 2r8o_A 173 LKLGKLIAFYDDNGIS-IDGHVEGWFTDDTAMRFEAY-GWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMC 243 (669)
T ss_dssp TTCTTEEEEEEECSEE-TTEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred cCCCcEEEEEECCCcE-eccccccccCccHHHHHHHC-CCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5677 666553 3321 112221 22334566664 78777 33 379999999999988 589998853
No 140
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=39.80 E-value=34 Score=27.47 Aligned_cols=48 Identities=4% Similarity=-0.091 Sum_probs=35.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCC-CHHHHHH
Q 017487 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPL-DRSTINA 285 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~-d~~~i~~ 285 (370)
..++++||-|+..--.+..++.|.+.|.++.++-.|+-.-+ -.+.|.+
T Consensus 18 ~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~g~R~~~~~~~~~el~~ 66 (142)
T 3lyu_A 18 FGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEK 66 (142)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEGGGCCSHHHHHT
T ss_pred CCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHH
Confidence 45799999999999988888888888888888844554322 2344543
No 141
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=39.67 E-value=20 Score=30.11 Aligned_cols=63 Identities=11% Similarity=0.133 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCceeEEEeccccCCC-----------HHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHh
Q 017487 251 GLSLKAAEILAKEGISAEVINLRSIRPLD-----------RSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d-----------~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~ 315 (370)
..+..+++.++ .|.+++++|+..+..++ .+.+.+.+..++.||+.= ....+++...+..++..
T Consensus 24 ~la~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~s-P~y~~~~p~~lK~~iD~ 97 (193)
T 1rtt_A 24 AALQEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFAT-PEYNYSMAGVLKNAIDW 97 (193)
T ss_dssp HHHHHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEEC-CEETTEECHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEc-cccccCcCHHHHHHHHH
Confidence 33444444454 58899999988753332 233555677777766543 33457777777766643
No 142
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=39.66 E-value=1.2e+02 Score=28.71 Aligned_cols=61 Identities=7% Similarity=-0.017 Sum_probs=42.8
Q ss_pred EEEEEec-hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHH-----HHHHHHhcC-CeEEEEecCCC
Q 017487 241 VTITAFS-KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS-----TINASVRKT-NRLVTVEEGFP 301 (370)
Q Consensus 241 v~Iia~G-~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~-----~i~~~~~~~-~~vvvvEe~~~ 301 (370)
=+|+++| +...+.++|++.+++.|-++.++++.+-+|-+.+ .|..+-+.+ +..|-.-+|..
T Consensus 137 PviLstGmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt~ 204 (350)
T 3g8r_A 137 PVVASTAGARREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHED 204 (350)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECCC
T ss_pred cEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCCC
Confidence 3467888 7888999999999888888888877777775554 343333346 44456667864
No 143
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=39.62 E-value=1.2e+02 Score=33.78 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=27.7
Q ss_pred cCCCcEEEee-CCHHHHHHHHHHHHhCCCCEEEE
Q 017487 172 SVPGLKVLSP-YSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 172 ~iP~~~V~~P-~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
.++++....+ .+++|+...++.|+++++|++|-
T Consensus 1032 G~~~va~~~v~~~~~~l~~al~eAl~~~GP~lI~ 1065 (1231)
T 2c42_A 1032 GYVYVATVSMGYSKQQFLKVLKEAESFPGPSLVI 1065 (1231)
T ss_dssp SSSEEEEECTTTCHHHHHHHHHHHHHSSSCEEEE
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3566666678 59999999999999999999985
No 144
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=39.26 E-value=59 Score=25.73 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC------------CeEEEEecCCCCCChHHH
Q 017487 252 LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT------------NRLVTVEEGFPQHGVGAE 308 (370)
Q Consensus 252 ~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~------------~~vvvvEe~~~~GGlg~~ 308 (370)
.+..|...|+.+||..+.+|+.. |.+.-.+..+++ -+.|++++.+ .||+-+.
T Consensus 18 ~c~~aK~lL~~kgV~feEidI~~----d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~-iGG~Dd~ 81 (121)
T 1u6t_A 18 KQQDVLGFLEANKIGFEEKDIAA----NEENRKWMRENVPENSRPATGYPLPPQIFNESQY-RGDYDAF 81 (121)
T ss_dssp HHHHHHHHHHHTTCCEEEEECTT----CHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEE-EEEHHHH
T ss_pred HHHHHHHHHHHCCCceEEEECCC----CHHHHHHHHHhccccccccCCCcCCCEEEECCEE-EechHHH
Confidence 35778888999999999999975 444333333232 2567778765 5998764
No 145
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=39.09 E-value=1.3e+02 Score=28.26 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=46.7
Q ss_pred EEEEEec-hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHH-----HHHHHHhcC-CeEEEEecCCCCCChHHHHHHHH
Q 017487 241 VTITAFS-KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRS-----TINASVRKT-NRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 241 v~Iia~G-~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~-----~i~~~~~~~-~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
=+|+++| +...+.++|++.+++.|-++.+.++.+-+|-+.+ .+...-+.+ +..|..-+|.. |..-.++...
T Consensus 150 PviLstGmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~--G~~~~~AAvA 227 (349)
T 2wqp_A 150 PIILSTGMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTL--DNYACLGAVA 227 (349)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSS--SSHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCC--cHHHHHHHHH
Confidence 4577888 6788899999999988888877776666765444 343333345 44456677763 4555555443
No 146
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=39.06 E-value=29 Score=33.42 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=34.6
Q ss_pred cccCEEEEeC-CCCCCCCCCcc---hHHHH-HHHccCCCcEEEe--eCCHHHHHHHHHHHHh----CCCCEEEEe
Q 017487 142 ISVPIVFRGP-NGAAAGVGAQH---SHCYA-AWYASVPGLKVLS--PYSSEDARGLLKAAIR----DPDPVVFLE 205 (370)
Q Consensus 142 ~~~pvv~~~~-~G~~~~~G~tH---s~~~~-a~~~~iP~~~V~~--P~d~~e~~~~l~~a~~----~~~Pv~i~~ 205 (370)
.++|+++++. .+.. -.++++ +..+. ..... -|+.++. -.|+.++...++.|.+ .++|++|-.
T Consensus 211 ~~lpvi~vv~NN~~~-i~~~~~~~~~~~d~~~~a~a-~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 211 LECPIIFFCRNNGYA-ISTPTSEQYRGDGIAARGPG-YGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp TTCCEEEEEEECSEE-TTEEGGGTCSSSTTGGGTGG-GTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HCcCEEEEEECCcee-eeecccccCCCCCHHHHHHH-cCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 5689988873 3321 111111 11222 22222 2444443 3478899999988886 579998853
No 147
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=39.00 E-value=59 Score=33.76 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=39.4
Q ss_pred cccC-EEEEeC-CCC--CCCCCCcchHHHHHHHccCCCcEEEee---CCHHHHHHHHHHHHh-CCCCEEEEe
Q 017487 142 ISVP-IVFRGP-NGA--AAGVGAQHSHCYAAWYASVPGLKVLSP---YSSEDARGLLKAAIR-DPDPVVFLE 205 (370)
Q Consensus 142 ~~~p-vv~~~~-~G~--~~~~G~tHs~~~~a~~~~iP~~~V~~P---~d~~e~~~~l~~a~~-~~~Pv~i~~ 205 (370)
.++| ++++.. .+. ++.-+..+..+....+++. ||.++.. .|..++...++.|.+ .++|++|..
T Consensus 195 ~~L~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~-G~~~~~V~DG~D~~al~~Al~~A~~~~~~P~lI~~ 265 (700)
T 3rim_A 195 QQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAY-GWHVQEVEGGENVVGIEEAIANAQAVTDRPSFIAL 265 (700)
T ss_dssp TTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHH-TCEEEEEECTTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred cCCCcEEEEEECCCcccccchhhccchhHHHHHHHc-CCeEEEECCCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 6786 666653 332 2211112222333566654 7777765 588999999999987 579999864
No 148
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=38.94 E-value=59 Score=30.44 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017487 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
|++-..|..+++.|++.|++++++++. ..+.+.+.+.+.+++.|++.=- ...|++...+..++.
T Consensus 268 gnT~~la~~i~~~l~~~g~~v~~~~~~---~~~~~~~~~~l~~~d~iiigsP-~y~~~~~~~~k~~ld 331 (404)
T 2ohh_A 268 GSTRKMAHAIAEGAMSEGVDVRVYCLH---EDDRSEIVKDILESGAIALGAP-TIYDEPYPSVGDLLM 331 (404)
T ss_dssp SHHHHHHHHHHHHHHTTTCEEEEEETT---TSCHHHHHHHHHTCSEEEEECC-EETTEECTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCeEEEEECC---CCCHHHHHHHHHHCCEEEEECc-cccccchHHHHHHHH
Confidence 344556666777777789999998765 4566667777888887665532 334666666666553
No 149
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=38.46 E-value=88 Score=24.26 Aligned_cols=32 Identities=6% Similarity=-0.045 Sum_probs=23.8
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017487 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
...++|+++|..-. ..++.|.++|.++.++|.
T Consensus 6 ~~~v~I~G~G~iG~---~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 6 RYEYIVIGSEAAGV---GLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp CCSEEEECCSHHHH---HHHHHHHHTTCCEEEEES
T ss_pred CCEEEEECCCHHHH---HHHHHHHHCCCeEEEEEC
Confidence 35688999887433 456678888999999885
No 150
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=38.24 E-value=76 Score=28.90 Aligned_cols=78 Identities=8% Similarity=0.009 Sum_probs=43.2
Q ss_pred cccCCCHHHHHHHHhcCCeEEEEecCC-----CCCChHHHHHHHHHhhccCCCCCCEEEEecCCCCCCCHHHHHHHhC--
Q 017487 274 SIRPLDRSTINASVRKTNRLVTVEEGF-----PQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAV-- 346 (370)
Q Consensus 274 ~l~P~d~~~i~~~~~~~~~vvvvEe~~-----~~GGlg~~i~~~l~~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~g-- 346 (370)
.+-+++.+.+.+.+...+- +++-... ...|++..+.+.++- +.|+..- +... ..+.+....|
T Consensus 257 ~~g~~~~~~~~~~~~~ad~-~v~ps~~~~~~~~~e~~~~~~~Ea~a~------G~PvI~~---~~~~-~~e~i~~~~g~~ 325 (394)
T 3okp_A 257 FLGRLEYQDMINTLAAADI-FAMPARTRGGGLDVEGLGIVYLEAQAC------GVPVIAG---TSGG-APETVTPATGLV 325 (394)
T ss_dssp EEESCCHHHHHHHHHHCSE-EEECCCCBGGGTBCCSSCHHHHHHHHT------TCCEEEC---SSTT-GGGGCCTTTEEE
T ss_pred EcCCCCHHHHHHHHHhCCE-EEecCccccccccccccCcHHHHHHHc------CCCEEEe---CCCC-hHHHHhcCCceE
Confidence 4456777888888888864 4443322 014667777777763 4566432 1111 1111111011
Q ss_pred ---CCHHHHHHHHHHHHhc
Q 017487 347 ---PQVEDIVRAAKRACYR 362 (370)
Q Consensus 347 ---l~~~~I~~~i~~~l~~ 362 (370)
-|++++++++.+++..
T Consensus 326 ~~~~d~~~l~~~i~~l~~~ 344 (394)
T 3okp_A 326 VEGSDVDKLSELLIELLDD 344 (394)
T ss_dssp CCTTCHHHHHHHHHHHHTC
T ss_pred eCCCCHHHHHHHHHHHHhC
Confidence 2788888888888754
No 151
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.86 E-value=47 Score=25.33 Aligned_cols=62 Identities=6% Similarity=0.065 Sum_probs=38.3
Q ss_pred cEEEEEechhHHHHH------HHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC------------CeEEEEecCCC
Q 017487 240 DVTITAFSKIVGLSL------KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT------------NRLVTVEEGFP 301 (370)
Q Consensus 240 dv~Iia~G~~~~~al------~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~------------~~vvvvEe~~~ 301 (370)
.++|.+. +..+.+. +|.+.|+++|+..+.+|+.. |.+...+..... =+.|++++..
T Consensus 9 ~V~vy~~-~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~----~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~- 82 (111)
T 2ct6_A 9 VIRVFIA-SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITM----SEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRY- 82 (111)
T ss_dssp CEEEEEC-SSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTT----CHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEE-
T ss_pred EEEEEEc-CCCCCcccchhHHHHHHHHHHcCCCEEEEECCC----CHHHHHHHHHHhcccccccCCCCCCCEEEECCEE-
Confidence 4556554 3333444 68888999999999999875 334333333331 2567777654
Q ss_pred CCChHH
Q 017487 302 QHGVGA 307 (370)
Q Consensus 302 ~GGlg~ 307 (370)
.||+..
T Consensus 83 iGG~d~ 88 (111)
T 2ct6_A 83 CGDYDS 88 (111)
T ss_dssp EEEHHH
T ss_pred EeCHHH
Confidence 588764
No 152
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=37.74 E-value=12 Score=31.20 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=27.1
Q ss_pred CCcEEEEEechhHH-HHHHHHHHHHhcCCceeEEEec
Q 017487 238 GKDVTITAFSKIVG-LSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 238 g~dv~Iia~G~~~~-~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
+-|++||++|.... ..-+..+.|++.||.+++.|-.
T Consensus 88 ~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T~ 124 (150)
T 3cpk_A 88 APEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQ 124 (150)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 46899999996543 2345567889999999999744
No 153
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=37.24 E-value=55 Score=30.56 Aligned_cols=70 Identities=9% Similarity=0.128 Sum_probs=42.6
Q ss_pred EEEEEechhH----HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017487 241 VTITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 241 v~Iia~G~~~----~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
-++|.++|+. ..|...++.|+++|++++++++. ..+...+.+.+.+++.+++.--. ..++....+.+++.
T Consensus 253 ~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~d~ii~g~p~-y~~~~~~~~~~~l~ 326 (398)
T 1ycg_A 253 KAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLS---VSDRNDVIKEILDARAVLVGSPT-INNDILPVVSPLLD 326 (398)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGG---GSCHHHHHHHHHHCSEEEEECCC-BTTBCCGGGHHHHH
T ss_pred eEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECC---CCCHHHHHHHHHHCCEEEEECCc-cCccchHHHHHHHH
Confidence 3445565544 45556666777789999999865 44566666667778777665432 33554444444443
No 154
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=37.23 E-value=96 Score=25.60 Aligned_cols=68 Identities=13% Similarity=0.034 Sum_probs=43.3
Q ss_pred chhHHHHHHHHHHHHhcC--CceeEEEeccc--cCCCH------------------------HHHHHHHhcCCeEEEEec
Q 017487 247 SKIVGLSLKAAEILAKEG--ISAEVINLRSI--RPLDR------------------------STINASVRKTNRLVTVEE 298 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~G--i~v~Vi~~~~l--~P~d~------------------------~~i~~~~~~~~~vvvvEe 298 (370)
|..-..+...++.|++.| .+++++|+... .+++. +.+.+.+..++.||+.=
T Consensus 16 s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~- 94 (201)
T 1t5b_A 16 SQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAA- 94 (201)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEEC-
T ss_pred ChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEe-
Confidence 334445556677787766 89999998763 22321 23445677787766554
Q ss_pred CCCCCChHHHHHHHHHh
Q 017487 299 GFPQHGVGAEICASVIE 315 (370)
Q Consensus 299 ~~~~GGlg~~i~~~l~~ 315 (370)
....+++.+.+..++-.
T Consensus 95 P~y~~~~p~~lK~~iD~ 111 (201)
T 1t5b_A 95 PMYNFNIPTQLKNYFDL 111 (201)
T ss_dssp CCBTTBCCHHHHHHHHH
T ss_pred CcccCcCCHHHHHHHHH
Confidence 34468888888777643
No 155
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=36.56 E-value=57 Score=32.55 Aligned_cols=111 Identities=10% Similarity=0.054 Sum_probs=57.1
Q ss_pred CCcEeechh--hHHHHHHHHHHHhccC-CeeEEEcccchHHH-HHHHHHHHHhhhccccCCCCcccCEEEEe--CCCCC-
Q 017487 83 PERVLDTPI--TEAGFTGIGVGAAYYG-LKPVVEFMTFNFSM-QAIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA- 155 (370)
Q Consensus 83 p~r~~~~GI--aE~~~v~~A~GlA~~G-~rp~~~t~~~~f~~-ra~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~- 155 (370)
|.+|+..+- +=-..+.+|.|++++- -++++.... +... ..+..+ ..++ ..++|++++. .+|..
T Consensus 415 ~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~G-DG~~~~~~~eL-~ta~--------~~~l~~~ivv~nN~~~~~ 484 (570)
T 2vbf_A 415 NSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIG-DGSLQLTVQEL-GLSI--------REKLNPICFIINNDGYTV 484 (570)
T ss_dssp TCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEE-HHHHHHHGGGH-HHHH--------HTTCCCEEEEEESSSCHH
T ss_pred CCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEc-chhhhcCHHHH-HHHH--------HcCCCCEEEEEECCchHH
Confidence 456763221 1224567777877763 255665544 4432 223322 2233 3567766554 33321
Q ss_pred -C---CCC----CcchHHHHHHHccCCCcE-----EEeeCCHHHHHHHHHHH-HhCCCCEEEE
Q 017487 156 -A---GVG----AQHSHCYAAWYASVPGLK-----VLSPYSSEDARGLLKAA-IRDPDPVVFL 204 (370)
Q Consensus 156 -~---~~G----~tHs~~~~a~~~~iP~~~-----V~~P~d~~e~~~~l~~a-~~~~~Pv~i~ 204 (370)
. +.. ..|..++..+.+.. |+. .+...+.+|+...++++ .+.++|++|-
T Consensus 485 ~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~~v~~~~el~~al~~a~~~~~~p~lie 546 (570)
T 2vbf_A 485 EREIHGPTQSYNDIPMWNYSKLPETF-GATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWIE 546 (570)
T ss_dssp HHHHSCTTCGGGCCCCCCGGGHHHHT-TCCTTTEEEEEECBHHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHhccCCCccCCCCCCHHHHHHHc-CCCcCCcceEEecCHHHHHHHHHHHHhcCCCcEEEE
Confidence 1 000 01211222333332 443 55668999999999984 6678899884
No 156
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=36.43 E-value=95 Score=28.94 Aligned_cols=70 Identities=10% Similarity=0.177 Sum_probs=42.7
Q ss_pred EEEEechhH----HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHh
Q 017487 242 TITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 242 ~Iia~G~~~----~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~ 315 (370)
++|.++|+. ..|...++.|+++|+.++++++. ..+.+.+.+.+.+++.+++.- ....++....+.+++..
T Consensus 255 v~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~d~ii~gs-p~~~~~~~~~~~~~l~~ 328 (402)
T 1e5d_A 255 VVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCK---ACHHSQIMSEISDAGAVIVGS-PTHNNGILPYVAGTLQY 328 (402)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETT---TSCHHHHHHHHHTCSEEEEEC-CCBTTBCCHHHHHHHHH
T ss_pred EEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECC---CCCHHHHHHHHHHCCEEEEEC-CccCCCchHHHHHHHHH
Confidence 344555544 44555566677789988888765 456666666677787666544 33346555556655543
No 157
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=36.22 E-value=52 Score=27.72 Aligned_cols=57 Identities=9% Similarity=0.028 Sum_probs=36.7
Q ss_pred EEEEEechhH----HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc--CCeEEEEecC
Q 017487 241 VTITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK--TNRLVTVEEG 299 (370)
Q Consensus 241 v~Iia~G~~~----~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~--~~~vvvvEe~ 299 (370)
++|++-|..- ....++++.|++.|+.+-.|-+-. ..|.+.|.+.... .++++.+++-
T Consensus 119 iillTDG~~~~~~~~~~~~~a~~l~~~gi~i~~igvG~--~~~~~~L~~iA~~~~~~~~~~~~~~ 181 (202)
T 1ijb_A 119 ALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGP--HANLKQIRLIEKQAPENKAFVLSSV 181 (202)
T ss_dssp EEEEECCCCCGGGCTTHHHHHHHHHHTTEEEEEEEEST--TSCHHHHHHHHHHCTTCCCEEESSG
T ss_pred EEEEccCCCCccchHHHHHHHHHHHHCCCEEEEEecCC--cCCHHHHHHHhCCCCcccEEEeCCH
Confidence 4445555321 246678888999998877776543 4788888777653 3467777653
No 158
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=35.48 E-value=34 Score=27.71 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC
Q 017487 248 KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT 290 (370)
Q Consensus 248 ~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~ 290 (370)
..+..+.+|.+.|+++|+..+++|+.. .|...+.+.+.+++.
T Consensus 10 p~C~~crkak~~L~~~gi~~~~idi~~-~~~~~~eL~~~~~~~ 51 (141)
T 1s3c_A 10 PASGTSRNTLEMIRNSGTEPTIILYLE-NPPSRDELVKLIADM 51 (141)
T ss_dssp TTCHHHHHHHHHHHHTTCCCEEECTTT-SCCCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHcCCCEEEEECCC-CCccHHHHHHHhccc
Confidence 667788899999999999999999874 688888888777654
No 159
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=35.45 E-value=1.4e+02 Score=28.49 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=48.0
Q ss_pred EEEEEec-hhHHHHHHHHHHHHhcCC-ceeEEEeccccCCCHH-----HHHHHHhcC-CeEEEEecCCCCCChHHHHHHH
Q 017487 241 VTITAFS-KIVGLSLKAAEILAKEGI-SAEVINLRSIRPLDRS-----TINASVRKT-NRLVTVEEGFPQHGVGAEICAS 312 (370)
Q Consensus 241 v~Iia~G-~~~~~al~Aa~~L~~~Gi-~v~Vi~~~~l~P~d~~-----~i~~~~~~~-~~vvvvEe~~~~GGlg~~i~~~ 312 (370)
=+|+++| +...+.++|++.+++.|- ++.+.++.+-+|-+.+ .|..+-+.+ +..|..-+|.. |-..-.++..
T Consensus 160 PViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG~SdHt~-G~~~~~~AAv 238 (385)
T 1vli_A 160 PMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSE-HPTEAPCAAV 238 (385)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECCS-SSSHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEEeCCCCC-CchHHHHHHH
Confidence 4578888 678899999999998886 8888887777876544 343333345 44456677863 3155445544
Q ss_pred H
Q 017487 313 V 313 (370)
Q Consensus 313 l 313 (370)
.
T Consensus 239 A 239 (385)
T 1vli_A 239 R 239 (385)
T ss_dssp H
T ss_pred H
Confidence 3
No 160
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=35.25 E-value=82 Score=26.66 Aligned_cols=49 Identities=10% Similarity=0.259 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhc-----CCeEEEEecCC
Q 017487 250 VGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGF 300 (370)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~-----~~~vvvvEe~~ 300 (370)
-....++++.++++||++.+|.+-+-.. +.+ +.+.+++ ...++++.+..
T Consensus 121 ~~~~~~~a~~lk~~gi~v~~Ig~G~~~~-~~~-l~~la~~~n~~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 121 EKNLIRLAKRMKKNNVAIDIIHIGELQN-ESA-LQHFIDAANSSDSCHLVSIPPSP 174 (192)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEESCC----CH-HHHHHHHHCSTTCCEEEEECCCS
T ss_pred chhHHHHHHHHHHCCCEEEEEEeCCCCc-cHH-HHHHHHhccCCCceEEEEecCcc
Confidence 4567788999999999999999877543 223 4444443 23677777664
No 161
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=34.33 E-value=44 Score=26.35 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=24.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
..++|+++|.+-.. .++.|.+.|+++.++|..
T Consensus 8 ~~viIiG~G~~G~~---la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSL---LGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHH---HHHHHHHTTCCEEEEESC
T ss_pred CCEEEECcCHHHHH---HHHHHHHCCCCEEEEECC
Confidence 46899999986654 456787889999999853
No 162
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=33.53 E-value=67 Score=28.04 Aligned_cols=66 Identities=17% Similarity=0.100 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEecccc--CC-------------------------------CHH--HHHHHHhcCCeE
Q 017487 249 IVGLSLKAAEILAKEGISAEVINLRSIR--PL-------------------------------DRS--TINASVRKTNRL 293 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~--P~-------------------------------d~~--~i~~~~~~~~~v 293 (370)
....+..+++.|+++|.+++++|+.... |. +.+ .+.+.+...+.|
T Consensus 17 t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~dd~~~~~~~l~~aD~i 96 (228)
T 3tem_A 17 NGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLV 96 (228)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcHHHHHHHHHHHhCCEE
Confidence 3455666777888889999999997643 32 122 234557777776
Q ss_pred EEEecCCCCCChHHHHHHHHHh
Q 017487 294 VTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 294 vvvEe~~~~GGlg~~i~~~l~~ 315 (370)
|+.=-- ..+++...+..++-.
T Consensus 97 v~~~P~-y~~~~p~~lK~~iD~ 117 (228)
T 3tem_A 97 IFQFPL-YWFSVPAILKGWMDR 117 (228)
T ss_dssp EEEEEC-BTTBCCHHHHHHHHH
T ss_pred EEECCh-hhcccCHHHHHHHHH
Confidence 554332 358888888777643
No 163
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=33.44 E-value=36 Score=25.46 Aligned_cols=66 Identities=12% Similarity=0.234 Sum_probs=40.2
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHH-hc-CCeEEEEecCCCCCChHH
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASV-RK-TNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~-~~-~~~vvvvEe~~~~GGlg~ 307 (370)
.+++|.+. .....|.+|.+.|++.|+..+.+|+..-... .+.+.+.. .. +=+.++++. ...||+..
T Consensus 16 ~~v~vy~~-~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~-~~~l~~~~~g~~~vP~ifi~g-~~igG~d~ 83 (99)
T 3qmx_A 16 AKIEIYTW-STCPFCMRALALLKRKGVEFQEYCIDGDNEA-REAMAARANGKRSLPQIFIDD-QHIGGCDD 83 (99)
T ss_dssp CCEEEEEC-TTCHHHHHHHHHHHHHTCCCEEEECTTCHHH-HHHHHHHTTTCCCSCEEEETT-EEEESHHH
T ss_pred CCEEEEEc-CCChhHHHHHHHHHHCCCCCEEEEcCCCHHH-HHHHHHHhCCCCCCCEEEECC-EEEeChHH
Confidence 35666553 5567888899999999999999998752111 12232222 21 124566654 45688765
No 164
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=33.20 E-value=92 Score=26.11 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHhcC--CceeEEEec--cc--cCCCHH-----------------------------HHHHHHhcCCeE
Q 017487 249 IVGLSLKAAEILAKEG--ISAEVINLR--SI--RPLDRS-----------------------------TINASVRKTNRL 293 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~G--i~v~Vi~~~--~l--~P~d~~-----------------------------~i~~~~~~~~~v 293 (370)
....+...++.|++.| .+++++|+. .. .+++.+ .+.+.+...+.|
T Consensus 19 t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~i 98 (208)
T 2hpv_A 19 SVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKV 98 (208)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEE
Confidence 3444556677788877 999999998 64 344322 244556677776
Q ss_pred EEEecCCCCCChHHHHHHHHHh
Q 017487 294 VTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 294 vvvEe~~~~GGlg~~i~~~l~~ 315 (370)
|+.== ...+++.+.+..++-.
T Consensus 99 v~~~P-~y~~~~pa~lK~~iD~ 119 (208)
T 2hpv_A 99 VIANP-MWNLNVPTRLKAWVDT 119 (208)
T ss_dssp EEEEE-CBTTBCCHHHHHHHHH
T ss_pred EEEec-cccCCCCHHHHHHHHH
Confidence 55443 3458888888877754
No 165
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=32.85 E-value=50 Score=27.05 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHH
Q 017487 247 SKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 247 G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
|++-..|...++.|++.|+++.++++....+ +. +.+++.|++.=-.+-.|.+-..+..++
T Consensus 21 GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~---~~----l~~~d~ii~g~pt~g~G~~p~~~~~f~ 80 (167)
T 1ykg_A 21 GNARRVAEALRDDLLAAKLNVKLVNAGDYKF---KQ----IASEKLLIVVTSTQGEGEPPEEAVALH 80 (167)
T ss_dssp SHHHHHHHHHHHHHHHHTCCCEEEEGGGCCG---GG----GGGCSEEEEEEECBGGGBCCGGGHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCceEEeehhhCCH---HH----hccCCeEEEEEcccCCCcCChhHHHHH
Confidence 4444555555666667799999998765432 21 345666655543332344444333343
No 166
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=32.56 E-value=1e+02 Score=31.41 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=51.1
Q ss_pred HHHHHHHHhccC------CeeEEEcccchHH-H--HHHHHHHHHhhhccccCCCCcccC-EEEEe-CCC--CCCCCCCcc
Q 017487 96 FTGIGVGAAYYG------LKPVVEFMTFNFS-M--QAIDHIINSAAKSNYMSSGQISVP-IVFRG-PNG--AAAGVGAQH 162 (370)
Q Consensus 96 ~v~~A~GlA~~G------~rp~~~t~~~~f~-~--ra~dqi~~~~a~~~~~~~g~~~~p-vv~~~-~~G--~~~~~G~tH 162 (370)
.+++|.|+|++. -+.+++... +.. + ..++.+. .++ ..++| ++++. ..+ .++.....+
T Consensus 126 gl~~A~G~AlA~~~~~~~~~~vv~v~G-DG~~~eG~~~Eal~-~A~--------~~~l~~livi~nnN~~~i~~~~~~~~ 195 (616)
T 3mos_A 126 GLGAACGMAYTGKYFDKASYRVYCLLG-DGELSEGSVWEAMA-FAS--------IYKLDNLVAILDINRLGQSDPAPLQH 195 (616)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCEEEEEE-TGGGGSHHHHHHHH-HHH--------HTTCTTEEEEEEECSBCSSSBCTTTT
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEEEC-ccccccCcHHHHHH-HHH--------HcCCCcEEEEEECCCCCCcCCccccc
Confidence 456666666652 144555544 433 2 4556553 344 25676 44343 333 222222222
Q ss_pred hHHH-HHHHccCCCcEEEee--CCHHHHHHHHHHHHhCCCCEEEEe
Q 017487 163 SHCY-AAWYASVPGLKVLSP--YSSEDARGLLKAAIRDPDPVVFLE 205 (370)
Q Consensus 163 s~~~-~a~~~~iP~~~V~~P--~d~~e~~~~l~~a~~~~~Pv~i~~ 205 (370)
...+ ...++.. ||.++.- .|..++...++.+ .++|++|-.
T Consensus 196 ~~~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~~--~~~P~lI~v 238 (616)
T 3mos_A 196 QMDIYQKRCEAF-GWHAIIVDGHSVEELCKAFGQA--KHQPTAIIA 238 (616)
T ss_dssp CHHHHHHHHHHT-TCEEEEEETTCHHHHHHHHHSC--CSSCEEEEE
T ss_pred ChHHHHHHHHHc-CCeEEEEcCCCHHHHHHHHHhc--CCCCEEEEE
Confidence 2333 4566665 7877633 3677877777654 578998853
No 167
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=32.47 E-value=1.3e+02 Score=24.16 Aligned_cols=58 Identities=9% Similarity=0.170 Sum_probs=39.1
Q ss_pred cEEEEEec-hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHH-HhcCCeEEEEec
Q 017487 240 DVTITAFS-KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINAS-VRKTNRLVTVEE 298 (370)
Q Consensus 240 dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~-~~~~~~vvvvEe 298 (370)
++.|+..+ .....|.+..+.|++.|+.+++.+.++=.++.. .|+++ ..+...+++|-+
T Consensus 10 Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~-kIR~a~~~kvPy~lVVG~ 69 (130)
T 1v95_A 10 DCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQ-ALEDVSRGGSPFAIVITQ 69 (130)
T ss_dssp TEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHH-HHHHHHHHTCSEEEEECH
T ss_pred eEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHH-HHHHHHHcCCCEEEEEec
Confidence 56666665 556779999999999999999866532233433 35543 456777777765
No 168
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=32.26 E-value=65 Score=31.02 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=22.9
Q ss_pred cCCCcEEEeeCCHHHHHHHHHHHHh----CCCCEEEEe
Q 017487 172 SVPGLKVLSPYSSEDARGLLKAAIR----DPDPVVFLE 205 (370)
Q Consensus 172 ~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~ 205 (370)
.+|++.| .-.|+.++...++.|++ .++|++|-.
T Consensus 267 G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 303 (407)
T 1qs0_A 267 GIASLRV-DGNDFVAVYAASRWAAERARRGLGPSLIEW 303 (407)
T ss_dssp TCEEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred CCeEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4554432 34478899999988885 478998853
No 169
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=32.14 E-value=48 Score=29.08 Aligned_cols=88 Identities=13% Similarity=0.007 Sum_probs=50.0
Q ss_pred CcEEEEEechhHHHHHHHHHHHHh---cCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHH---HHHHH
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAK---EGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGA---EICAS 312 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~---~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~---~i~~~ 312 (370)
..-++|-|||+.+.+.+.|+.|.+ +|+++.|+++... |.+. +.+.+.+|++=-.+-.|-+-. .+.+.
T Consensus 40 ~~kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~~~---~~~~----l~~~~~vI~~tsTyG~Ge~Pdna~~F~~~ 112 (219)
T 3hr4_A 40 RVRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKY---RLSC----LEEERLLLVVTSTFGNGDCPGNGEKLKKS 112 (219)
T ss_dssp SCEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGC---CGGG----GGTCSEEEEEEECBTTTBCCGGGHHHHHH
T ss_pred CCcEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcccC---CHhH----hccCCeEEEEEeccCCCcCCHHHHHHHHH
Confidence 345667799999888888887753 4888888887654 3222 335666666655543443322 33444
Q ss_pred HHhhccCCCCCCEEEEecCCC
Q 017487 313 VIEESFGYLDAPVERIAGADV 333 (370)
Q Consensus 313 l~~~~~~~l~~~~~~ig~~d~ 333 (370)
|.......-+.++--+|.-|.
T Consensus 113 L~~~~~~l~~~~~aVfGlGds 133 (219)
T 3hr4_A 113 LFMLKELNNKFRYAVFGLGSS 133 (219)
T ss_dssp HHHCCCCSSCCEEEEEEEECT
T ss_pred HHhcchhhcCCEEEEEeCCCc
Confidence 443210001235566776553
No 170
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=31.59 E-value=73 Score=26.79 Aligned_cols=64 Identities=8% Similarity=0.089 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCCceeEEEeccccCCCH----------HHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHh
Q 017487 250 VGLSLKAAEILAKEGISAEVINLRSIRPLDR----------STINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 250 ~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~----------~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~ 315 (370)
...+..+++.++ .|.+++++|+..+-.++. +.+.+.+...+.||+.= -...+++...+..++-.
T Consensus 19 ~~la~~~~~~~~-~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~s-P~y~~~~p~~lK~~iD~ 92 (192)
T 3fvw_A 19 RQLAKKAETIIG-DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFS-PVYNYAIPGPVKNLLDW 92 (192)
T ss_dssp HHHHHHHHHHHT-TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEEC-CCBTTBCCHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEEEC-cccccCCCHHHHHHHHH
Confidence 334555566665 689999999987532332 34667788888776654 33468888877776643
No 171
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=31.41 E-value=70 Score=25.86 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=36.9
Q ss_pred EEEEechhHHHHHHHHHHHHhc-CCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHH
Q 017487 242 TITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 242 ~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
++|.|+|..+...+.|+.+.+. |. ++++++.. .+.+. +.+++.|++.=-.+-.|-+...+..++
T Consensus 4 ~~I~Y~S~tGnT~~~A~~ia~~lg~-~~~~~~~~---~~~~~----l~~~d~ii~g~pt~~~g~~p~~~~~f~ 68 (164)
T 2bmv_A 4 IGIFFGTDSGNAEAIAEKISKAIGN-AEVVDVAK---ASKEQ----FNSFTKVILVAPTAGAGDLQTDWEDFL 68 (164)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHCS-EEEEEGGG---CCHHH----HTTCSEEEEEEEEETTTEECHHHHHHH
T ss_pred EEEEEECCCchHHHHHHHHHHHcCC-cEEEeccc---CCHhH----HhhCCEEEEEECCcCCCcCcHHHHHHH
Confidence 3566888888888888887654 66 77776653 33332 445666665432222233444455554
No 172
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=31.19 E-value=1.1e+02 Score=20.90 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=39.2
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC-CeEEEEecCCCCCChHHHHHHHHH
Q 017487 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-NRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~-~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
+++.+ -.....+.++...|++.|++...+|+.. .|-..+.+.+..... =++++++ +...||+. .|.+++.
T Consensus 3 i~~y~-~~~C~~C~~~~~~l~~~~i~~~~~~i~~-~~~~~~~~~~~~~~~~vP~l~~~-g~~i~g~~-~i~~~~~ 73 (82)
T 1fov_A 3 VEIYT-KETCPYCHRAKALLSSKGVSFQELPIDG-NAAKREEMIKRSGRTTVPQIFID-AQHIGGYD-DLYALDA 73 (82)
T ss_dssp EEEEE-CSSCHHHHHHHHHHHHHTCCCEEEECTT-CSHHHHHHHHHHSSCCSCEEEET-TEEEESHH-HHHHHHH
T ss_pred EEEEE-CCCChhHHHHHHHHHHCCCCcEEEECCC-CHHHHHHHHHHhCCCCcCEEEEC-CEEEeCHH-HHHHHHH
Confidence 44443 2445677778888888899999999864 111112233322221 2455554 44567764 4555554
No 173
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=30.77 E-value=91 Score=25.65 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=36.1
Q ss_pred cEEEEEechhH----HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh--cCCeEEEEecC
Q 017487 240 DVTITAFSKIV----GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR--KTNRLVTVEEG 299 (370)
Q Consensus 240 dv~Iia~G~~~----~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~--~~~~vvvvEe~ 299 (370)
+++|+++|+.. ..-..+++.|++.==+++++|.-+ .|++.- ..+. +++++|+||--
T Consensus 4 ~ilVlGiGN~L~gDDG~G~~v~~~L~~~~p~v~vid~Gt-~~~~l~---~~l~~~~~d~lIiVDA~ 65 (157)
T 3pu6_A 4 KKVLLCVGNELRGDDGVAIALGRLVEEQMPEWSVFFGYD-TPESEF---GKLRELAPDVIVVADAM 65 (157)
T ss_dssp CEEEEEECCTTBGGGGHHHHHHHHHHHHCTTEEEEEEET-CGGGGH---HHHHHHCCSEEEEEEEE
T ss_pred CEEEEEECCcccccccHHHHHHHHHHhhCCCeEEEECCC-CHHHHH---HHHHhcCCCEEEEEEec
Confidence 57899999765 234566777763312799999886 444322 3333 47889988853
No 174
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=30.16 E-value=70 Score=27.24 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCcee-EEEeccccCCCH-----------HHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017487 253 SLKAAEILAKEGISAE-VINLRSIRPLDR-----------STINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 253 al~Aa~~L~~~Gi~v~-Vi~~~~l~P~d~-----------~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
+..+++.+ ++|.+++ ++|+.-+-.++. +.+.+.+...+.+|++=-- ..+++...+..++-
T Consensus 26 a~~~~~~~-~~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~-Y~~s~p~~LK~~iD 97 (199)
T 4hs4_A 26 ARALPEIA-PEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPE-YNYSVPGVLKNAID 97 (199)
T ss_dssp HHHHHHHC-CTTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECC-BTTBCCHHHHHHHH
T ss_pred HHHHHHHc-cCCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCc-cCCCcCHHHHHHHH
Confidence 33344444 4688999 999977633332 2456667778776655433 35777777766653
No 175
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=29.67 E-value=97 Score=29.71 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=37.4
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec---------------cccCCCHHHHHHH-HhcCCeEEE
Q 017487 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR---------------SIRPLDRSTINAS-VRKTNRLVT 295 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~---------------~l~P~d~~~i~~~-~~~~~~vvv 295 (370)
+..++|+++|..-.. .++.|.++|+++.|||.. .-.+-+.+.|.++ +.+.+.||+
T Consensus 4 ~~~viIiG~Gr~G~~---va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQI---TGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp CCSEEEECCSHHHHH---HHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEE
T ss_pred CCeEEEECCCHHHHH---HHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEE
Confidence 356999999986654 566788899999999953 1134466666654 556665544
No 176
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=28.55 E-value=32 Score=34.50 Aligned_cols=144 Identities=10% Similarity=0.125 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhc-CCCeEEecCCCCCCCCccccchhHHHHhCCCcEeechh--hHHHHHHHHHHHhcc-CCeeEEEccc
Q 017487 41 EALNSALDEEMSA-DPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPI--TEAGFTGIGVGAAYY-GLKPVVEFMT 116 (370)
Q Consensus 41 ~a~~~~L~~l~~~-~~~ivvi~~Dl~~~~g~~~~~~~~~~~~~p~r~~~~GI--aE~~~v~~A~GlA~~-G~rp~~~t~~ 116 (370)
..+.+.|.+.+.. ++.++ +..|++.+ .+.. ..+ .|.+|+..+- +=-..+..|.|+|++ .-++++....
T Consensus 377 ~~v~~~l~~~l~~~~~~iv-~~~d~G~~--~~~~-~~~----~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~G 448 (565)
T 2nxw_A 377 MDIARAVNDRVRAGQEPLL-IAADMGDC--LFTA-MDM----IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVG 448 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCE-EEECSSHH--HHHH-TTS----CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HHHHHHHHHhcccccCCEE-EEecchHH--HHHH-HhC----CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEe
Confidence 3455666666654 13344 23466522 1110 111 3677775321 111256678888765 2355555544
Q ss_pred chHHHH-HHHHHHHHhhhccccCCCCcccCEEEEe--CCCCC--C---CCCC---cchHHHHHHHccCCCcEEEeeCCHH
Q 017487 117 FNFSMQ-AIDHIINSAAKSNYMSSGQISVPIVFRG--PNGAA--A---GVGA---QHSHCYAAWYASVPGLKVLSPYSSE 185 (370)
Q Consensus 117 ~~f~~r-a~dqi~~~~a~~~~~~~g~~~~pvv~~~--~~G~~--~---~~G~---tHs~~~~a~~~~iP~~~V~~P~d~~ 185 (370)
+.... .+..+ ..++ ..++|++++. .+|.. . ..+. .|..++..+.+.. |+..+...+.+
T Consensus 449 -DG~~~~~~~~l-~ta~--------~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~ 517 (565)
T 2nxw_A 449 -DGAFQMTGWEL-GNCR--------RLGIDPIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRA 517 (565)
T ss_dssp -HHHHHHHGGGG-GGHH--------HHTCCCEEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHTGGG-TSEEEEECBHH
T ss_pred -chHHHhhHHHH-HHHH--------HhCCCCEEEEEECCCCcEEeeecccCCCCcCCCCCHHHHHHHc-CCCEEEeCCHH
Confidence 55432 11111 1122 3567866554 23321 0 1111 1212233444443 67778889999
Q ss_pred HHHHHHHHHHhCCCCE-EE
Q 017487 186 DARGLLKAAIRDPDPV-VF 203 (370)
Q Consensus 186 e~~~~l~~a~~~~~Pv-~i 203 (370)
|+...++++++.++|+ +|
T Consensus 518 el~~al~~a~~~~gp~~li 536 (565)
T 2nxw_A 518 ELKAALDKAFATRGRFQLI 536 (565)
T ss_dssp HHHHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHHhcCCCeEEE
Confidence 9999999999988888 54
No 177
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=28.11 E-value=1.6e+02 Score=27.46 Aligned_cols=58 Identities=17% Similarity=0.130 Sum_probs=39.3
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecccc-------------CCCHHHHHHHHhcCCeEEEEec
Q 017487 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR-------------PLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~-------------P~d~~~i~~~~~~~~~vvvvEe 298 (370)
.+..+.|++.|.......++ +++.|+++-++|..--. ..|.+.+.+.+++.+ +|+.|-
T Consensus 11 ~~~~IlIlG~G~lg~~la~a---a~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~d-vi~~~~ 81 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQS---AQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCD-VITYEF 81 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHH---HHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCS-EEEESS
T ss_pred CCCEEEEECCCHHHHHHHHH---HHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCC-cceecc
Confidence 45679999999775554444 44559999999864222 246677888887775 566664
No 178
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=27.88 E-value=1.8e+02 Score=24.44 Aligned_cols=65 Identities=8% Similarity=0.000 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhc--CCceeEEEeccc--cCCCH-------------------------HHHHHHHhcCCeEEEEecC
Q 017487 249 IVGLSLKAAEILAKE--GISAEVINLRSI--RPLDR-------------------------STINASVRKTNRLVTVEEG 299 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~--Gi~v~Vi~~~~l--~P~d~-------------------------~~i~~~~~~~~~vvvvEe~ 299 (370)
....+..+++.|+++ |.+++++|+... .+++. +.+.+.+...+.||+.==
T Consensus 18 t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P- 96 (212)
T 3r6w_A 18 SRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTP- 96 (212)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEE-
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcC-
Confidence 334556677788877 999999999653 23332 223455667776655432
Q ss_pred CCCCChHHHHHHHHH
Q 017487 300 FPQHGVGAEICASVI 314 (370)
Q Consensus 300 ~~~GGlg~~i~~~l~ 314 (370)
...+++...+..++-
T Consensus 97 ~y~~~~pa~lK~~iD 111 (212)
T 3r6w_A 97 MYNFSVPSGLKAWID 111 (212)
T ss_dssp CBTTBCCHHHHHHHH
T ss_pred cccccCCHHHHHHHH
Confidence 335888888877764
No 179
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=27.72 E-value=1.7e+02 Score=22.85 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=42.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhc---CCceeEEEeccccCCCHHHHHHHHh-----cCCeEEEEecCCCCCChHHHH
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKE---GISAEVINLRSIRPLDRSTINASVR-----KTNRLVTVEEGFPQHGVGAEI 309 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~---Gi~v~Vi~~~~l~P~d~~~i~~~~~-----~~~~vvvvEe~~~~GGlg~~i 309 (370)
..|+|.+. +....|.+|.+.|+++ |+..+++++... -|.+.+.+.++ .+=+.|++... ..||+....
T Consensus 14 ~~Vvvysk-~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~--~d~~~~~~~l~~~~G~~tVP~IfI~G~-~IGG~ddl~ 88 (127)
T 3l4n_A 14 SPIIIFSK-STCSYSKGMKELLENEYQFIPNYYIIELDKH--GHGEELQEYIKLVTGRGTVPNLLVNGV-SRGGNEEIK 88 (127)
T ss_dssp CSEEEEEC-TTCHHHHHHHHHHHHHEEEESCCEEEEGGGS--TTHHHHHHHHHHHHSCCSSCEEEETTE-ECCCHHHHH
T ss_pred CCEEEEEc-CCCccHHHHHHHHHHhcccCCCcEEEEecCC--CCHHHHHHHHHHHcCCCCcceEEECCE-EEcCHHHHH
Confidence 35777665 6677888888888875 688899988753 13344444443 12256777654 458876543
No 180
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=27.65 E-value=1.2e+02 Score=28.93 Aligned_cols=56 Identities=11% Similarity=0.043 Sum_probs=38.3
Q ss_pred cEEEEEech-hHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCC
Q 017487 240 DVTITAFSK-IVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFP 301 (370)
Q Consensus 240 dv~Iia~G~-~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~ 301 (370)
++. |.+|. ....|++.++.|+++|+++++...... .+. ...-++.+.|+.+.+...
T Consensus 338 ~v~-v~~~~~~~~~a~~~a~~LR~~G~~v~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~ 394 (400)
T 3od1_A 338 QTC-ILFSNERRFEAIELARKKRANGEAVVLQDLAGV----TDV-DAMSSNYQDVIYCIGTAG 394 (400)
T ss_dssp CEE-EEECGGGHHHHHHHHHHHHTTTCCEEEEEGGGC----SCH-HHHHTTSSEEEEECSCC-
T ss_pred eEE-EEECcHHHHHHHHHHHHHHHCCCEEEEEecCCh----hHH-HHHHcCCCEEEEEecCCC
Confidence 455 45774 467789999999999999999877653 222 223345678888877543
No 181
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.69 E-value=48 Score=34.07 Aligned_cols=34 Identities=18% Similarity=0.298 Sum_probs=29.1
Q ss_pred HccCCCcEEEeeCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 170 YASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 170 ~~~iP~~~V~~P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
++.+|. .|+.|.|.+|+..++++|-+++-|++.+
T Consensus 202 ~~~~P~-aVV~P~s~eeV~~iv~~A~~~~ipVvpr 235 (658)
T 4bby_A 202 FERIPD-IVLWPTCHDDVVKIVNLACKYNLCIIPI 235 (658)
T ss_dssp CSCCCS-EEEECCSHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcC-EEEeeCCHHHHHHHHHHHHHCCCeEEEE
Confidence 456886 5999999999999999999988887776
No 182
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=26.63 E-value=85 Score=24.59 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=41.5
Q ss_pred CCcEEEEEech----hHHHHHHHHHHHHhcCC-ceeEEEeccccCCCHHHHHHHHhc-----CCeEEEEecCCCCCChHH
Q 017487 238 GKDVTITAFSK----IVGLSLKAAEILAKEGI-SAEVINLRSIRPLDRSTINASVRK-----TNRLVTVEEGFPQHGVGA 307 (370)
Q Consensus 238 g~dv~Iia~G~----~~~~al~Aa~~L~~~Gi-~v~Vi~~~~l~P~d~~~i~~~~~~-----~~~vvvvEe~~~~GGlg~ 307 (370)
..+|+|++-|+ ....+.+|.+.|.+.|+ ....+|+.. ...+++.+.+ |=+-|+|.... .||...
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~-----~~~~r~~l~~~sg~~TvPqIFI~g~~-IGG~Dd 92 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLD-----DPELRQGIKDYSNWPTIPQVYLNGEF-VGGCDI 92 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTS-----CHHHHHHHHHHHTCCSSCEEEETTEE-EECHHH
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccC-----CHHHHHHHHHhccCCCCCeEeECCEE-ECCHHH
Confidence 35688888884 57788889999999998 588888743 2334444332 21335566544 488654
No 183
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=26.30 E-value=67 Score=26.04 Aligned_cols=31 Identities=29% Similarity=0.324 Sum_probs=24.7
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEec
Q 017487 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLR 273 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~ 273 (370)
|++||+-|. ..++++..|.+.|.++.+|+-.
T Consensus 3 ~vvIIGgG~---~Gl~~A~~l~~~g~~v~lie~~ 33 (180)
T 2ywl_A 3 DVIVVGGGP---SGLSAALFLARAGLKVLVLDGG 33 (180)
T ss_dssp EEEEECCSH---HHHHHHHHHHHTTCCEEEEECS
T ss_pred eEEEECCCH---HHHHHHHHHHHCCCcEEEEeCC
Confidence 688999885 3456777788889999999864
No 184
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=26.27 E-value=67 Score=26.14 Aligned_cols=49 Identities=4% Similarity=-0.074 Sum_probs=35.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccC-CCHHHHHH
Q 017487 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRP-LDRSTINA 285 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P-~d~~~i~~ 285 (370)
.+.++++||-|+..--.+..++.|.+.|-++.++..|+-.- +-.+.|.+
T Consensus 22 ~~~~~llIaGG~GItPl~sm~~~l~~~~~~v~l~g~r~~~d~~~~~el~~ 71 (158)
T 3lrx_A 22 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTLHVTFEPMVILKEELEK 71 (158)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHHTCEEEEEEECBGGGCCSHHHHHH
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhcCCcEEEEEeCCHHHhhHHHHHHH
Confidence 34689999999999888888888877787888885555432 23445554
No 185
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=26.21 E-value=83 Score=28.59 Aligned_cols=64 Identities=13% Similarity=0.001 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCceeEEEeccccC--------------------------------CC--HHHHHHHHhcCCeEEEE
Q 017487 251 GLSLKAAEILAKEGISAEVINLRSIRP--------------------------------LD--RSTINASVRKTNRLVTV 296 (370)
Q Consensus 251 ~~al~Aa~~L~~~Gi~v~Vi~~~~l~P--------------------------------~d--~~~i~~~~~~~~~vvvv 296 (370)
..+..+++.|+++|.+|+++|+.-.++ ++ .....+.+...+.||++
T Consensus 40 aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~aD~iv~~ 119 (280)
T 4gi5_A 40 ALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSADIVAEQEKLLWADTVIFQ 119 (280)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcHHHHHHHHHHHhCCEEEEE
Confidence 345567788999999999999965432 11 22334556677776554
Q ss_pred ecCCCCCChHHHHHHHHHh
Q 017487 297 EEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 297 Ee~~~~GGlg~~i~~~l~~ 315 (370)
=- ...+++-..+..++-.
T Consensus 120 ~P-~~w~~~Pa~lK~~iDr 137 (280)
T 4gi5_A 120 FP-LWWFSMPAIMKGWIDR 137 (280)
T ss_dssp EE-CBTTBCCHHHHHHHHH
T ss_pred ec-cccccCcHHHHHHHHH
Confidence 43 3457777777777644
No 186
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=26.03 E-value=85 Score=29.21 Aligned_cols=56 Identities=20% Similarity=0.369 Sum_probs=38.1
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec----------------cccC---CCHHHHHHHHhcCCeEEE
Q 017487 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR----------------SIRP---LDRSTINASVRKTNRLVT 295 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~----------------~l~P---~d~~~i~~~~~~~~~vvv 295 (370)
|+.++||+.|.++..- ++..|...|-++.|.|.. +..+ .+.+.+.+.+.+.+-||+
T Consensus 177 gk~vvVIG~G~iVG~~--~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs 251 (320)
T 1edz_A 177 GKKCIVINRSEIVGRP--LAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 251 (320)
T ss_dssp TCEEEEECCCTTTHHH--HHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCEEEEECCCcchHHH--HHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence 5679999999887764 556677788888887542 1111 334678888888875543
No 187
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=25.79 E-value=1.4e+02 Score=24.47 Aligned_cols=38 Identities=18% Similarity=0.319 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCC
Q 017487 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
.|.+.|++.||+++ ..-++++.+.+ ...+.||++++..
T Consensus 57 ~a~~~l~e~Gid~s----~~ar~l~~~~~----~~~DlIi~M~~~~ 94 (161)
T 2cwd_A 57 RARRVLEEEGAYFP----HVARRLTREDV----LAYDHILVMDREN 94 (161)
T ss_dssp HHHHHHHHHTCCCC----CCCCBCCHHHH----HHCSEEEESSHHH
T ss_pred HHHHHHHHcCcCcc----ccccCCCHhHh----ccCCEEEECChHH
Confidence 45666777899876 34566776655 3578999998754
No 188
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=25.21 E-value=1.6e+02 Score=27.03 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=14.6
Q ss_pred CCHHHHHHHHhcCCeEEEEecCC
Q 017487 278 LDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 278 ~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
.|.+.|.+.+++++.++++|+..
T Consensus 155 ~~l~~i~~l~~~~~~~li~Dea~ 177 (411)
T 3nnk_A 155 QPLAELGEICRRYDALFYTDATA 177 (411)
T ss_dssp CCCTTHHHHHHHHTCEEEEECTT
T ss_pred ccHHHHHHHHHHcCCEEEEECCc
Confidence 44556777777666666666654
No 189
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=24.74 E-value=1e+02 Score=25.28 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCceeEEEecccc--CCCHHHHHHHHhcCC--eEEEEecCCCCCChHHHHHHHHH
Q 017487 254 LKAAEILAKEGISAEVINLRSIR--PLDRSTINASVRKTN--RLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 254 l~Aa~~L~~~Gi~v~Vi~~~~l~--P~d~~~i~~~~~~~~--~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
.++++.|++.|+.+-+|-+-.-. +.|.+.|.+.+..++ .+..+++....-.+-..|.+.++
T Consensus 130 ~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~~ic 194 (198)
T 1n3y_A 130 KDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIF 194 (198)
T ss_dssp HHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHHHHHHHHHHHHhhee
Confidence 45677888889988888776533 346787877766543 45666654333444455555444
No 190
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=24.53 E-value=2.7e+02 Score=23.03 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=35.9
Q ss_pred EEEEec-hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCC-eEEEEecCCCCCChHHHHH
Q 017487 242 TITAFS-KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTN-RLVTVEEGFPQHGVGAEIC 310 (370)
Q Consensus 242 ~Iia~G-~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~-~vvvvEe~~~~GGlg~~i~ 310 (370)
.||+-| +-...+.+|++.|++-|+..++ .+.+..-.+.+ +.+.+++.. +++++=-+. .+.|.+-++
T Consensus 3 ~Iimgs~SD~~v~~~a~~~l~~~gi~~dv-~V~saHR~p~~-~~~~~~~a~~~ViIa~AG~-aa~Lpgvva 70 (157)
T 2ywx_A 3 CIIMGSESDLKIAEKAVNILKEFGVEFEV-RVASAHRTPEL-VEEIVKNSKADVFIAIAGL-AAHLPGVVA 70 (157)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTTCCEEE-EECCTTTCHHH-HHHHHHHCCCSEEEEEEES-SCCHHHHHH
T ss_pred EEEEccHHHHHHHHHHHHHHHHcCCCeEE-EEEcccCCHHH-HHHHHHhcCCCEEEEEcCc-hhhhHHHHH
Confidence 344433 6778899999999988986432 23334444444 445555321 444433332 355555444
No 191
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=23.91 E-value=2.8e+02 Score=22.26 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=63.0
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCC--HHHHHHHHhc---CCeEEEEecCCCCCChHHHHHHHHH
Q 017487 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLD--RSTINASVRK---TNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d--~~~i~~~~~~---~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
.++|+|.|....-.+++++.+-.+--++..+++..=...+ .+.+.+.+++ .+.|+++=+ ..||--..++..+.
T Consensus 3 giii~sHg~~A~gl~~~~~~i~G~~~~i~av~~~~~~~~~~~~~~i~~~i~~~~~~~gvlvLtD--l~GGSp~n~a~~~~ 80 (150)
T 3ipr_A 3 GIVIATHGALSDGAKDAATVIMGATENIETVNLNSGDDVQALGGQIKTAIENVQQGDGVLVMVD--LLSASPYNQAVLVI 80 (150)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHSCCCSEEEEEECTTCCHHHHHHHHHHHHHHHCSSSCEEEEES--STTSHHHHHHHHHH
T ss_pred EEEEEECcHHHHHHHHHHHHHcCCCCCEEEEEecCCCCHHHHHHHHHHHHHhcCCCCCEEEEEe--CCCCCHHHHHHHHH
Confidence 4789999998888999999875443567778765222111 1234455543 234555544 34776555655554
Q ss_pred hhccCCCCCCEEEEecCCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 017487 315 EESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRAC 360 (370)
Q Consensus 315 ~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~gl~~~~I~~~i~~~l 360 (370)
.+.-.....++.-++.-+.|.--.-...+..+.+.+++++.+.+.-
T Consensus 81 ~~~~~~~~~~v~vI~GvNLpmlle~~~~r~~~~~l~el~~~~~~~g 126 (150)
T 3ipr_A 81 NELEPALQKKIFVVSGTNLPMVLEAINHQLLGTPIAEAAQAIVAQG 126 (150)
T ss_dssp TTSCHHHHTTEEEEESCCHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HhhhhccCCCEEEEeCCCHHHHHHHHHhhhcCCCHHHHHHHHHHHh
Confidence 3200000135666766554321111112222456777776665543
No 192
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=23.87 E-value=4.4e+02 Score=25.35 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=58.9
Q ss_pred CCcEEEEE-echhHHHHHHHHHHHHhcCCc-eeEEEeccccCCCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHHh
Q 017487 238 GKDVTITA-FSKIVGLSLKAAEILAKEGIS-AEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 238 g~dv~Iia-~G~~~~~al~Aa~~L~~~Gi~-v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~~ 315 (370)
+..++|++ .|.......+ ..++.|++ -.|+ ++-..+.+.+.+.+...+ +++.-. .. |+|-.+.+.++-
T Consensus 406 ~~~l~i~G~~g~~~~~l~~---~~~~~~l~~~~v~---~~g~~~~~~~~~~~~~ad-v~v~ps--~~-~~g~~~lEAma~ 475 (568)
T 2vsy_A 406 DSVLWLLSGPGEADARLRA---FAHAQGVDAQRLV---FMPKLPHPQYLARYRHAD-LFLDTH--PY-NAHTTASDALWT 475 (568)
T ss_dssp TCEEEEECCSTTHHHHHHH---HHHHTTCCGGGEE---EECCCCHHHHHHHGGGCS-EEECCS--SS-CCSHHHHHHHHT
T ss_pred CcEEEEecCCHHHHHHHHH---HHHHcCCChhHEE---eeCCCCHHHHHHHHhcCC-EEeeCC--CC-CCcHHHHHHHhC
Confidence 34566666 5554433333 33455775 3343 445567677888888776 444333 33 677777887763
Q ss_pred hccCCCCCCEEEEecCCCCCC-CHHHHHHHhCC------CHHHHHHHHHHHHhc
Q 017487 316 ESFGYLDAPVERIAGADVPMP-YAANLERMAVP------QVEDIVRAAKRACYR 362 (370)
Q Consensus 316 ~~~~~l~~~~~~ig~~d~~~~-~~~~l~~~~gl------~~~~I~~~i~~~l~~ 362 (370)
+.|+..+-.. .+.. .+..+....|+ |++++++++.+++..
T Consensus 476 ------G~Pvv~~~g~-~~~s~~~~~~l~~~g~~e~v~~~~~~la~~i~~l~~~ 522 (568)
T 2vsy_A 476 ------GCPVLTTPGE-TFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASD 522 (568)
T ss_dssp ------TCCEEBCCCS-SGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHC
T ss_pred ------CCCEEeccCC-CchHHHHHHHHHHCCChhhhcCCHHHHHHHHHHHhcC
Confidence 4577542111 1111 11111222233 889999999888854
No 193
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=23.73 E-value=71 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=23.7
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
-|++||+.|..- +.||..|++.|.++.||+-
T Consensus 7 yDvvIIG~GpAG---l~aA~~l~~~g~~V~liE~ 37 (312)
T 4gcm_A 7 FDIAIIGAGPAG---MTAAVYASRANLKTVMIER 37 (312)
T ss_dssp EEEEEECCSHHH---HHHHHHHHHTTCCEEEEES
T ss_pred CCEEEECCCHHH---HHHHHHHHHCCCCEEEEec
Confidence 489999999543 3456667778999999973
No 194
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=23.58 E-value=1.5e+02 Score=28.36 Aligned_cols=60 Identities=20% Similarity=0.261 Sum_probs=38.7
Q ss_pred eCCcEEEEEec----hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHH----------HHHHH---hcCCeEEEEecC
Q 017487 237 EGKDVTITAFS----KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRST----------INASV---RKTNRLVTVEEG 299 (370)
Q Consensus 237 ~g~dv~Iia~G----~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~----------i~~~~---~~~~~vvvvEe~ 299 (370)
++.|.++|+.| .....+--.++.+++.|+.+-.| ..+||..|- |.++. +..+.+|++++.
T Consensus 110 ~~~d~vfi~ag~GGGTGtGa~pvia~~~ke~~~~~~~v---vt~Pf~~Eg~~~~~~A~~~i~~l~~~~~~vd~~ividN~ 186 (389)
T 4ei7_A 110 EDRDFIWITCGLGGGTGTGALLKAIEMLYEHDYNFGLL---LTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNA 186 (389)
T ss_dssp TTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCCEEEE---EEECCGGGHHHHHHHHHHHHHHHHHTGGGSSEEEEEEHH
T ss_pred CCccEEEEEecCCCCCccccHHHHHHHHHHcCCCEEEE---EEeCCCcCchHHHHHHHHHHHHHHHHhccCCeEEEeccH
Confidence 47899999876 34555555677788877654443 246988761 22221 335678999975
No 195
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=23.54 E-value=1.2e+02 Score=28.10 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=23.9
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCC-ceeEEEec
Q 017487 237 EGKDVTITAFSKIVGLSLKAAEILAKEGI-SAEVINLR 273 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi-~v~Vi~~~ 273 (370)
+|+.++|++.| ..+..++..|.+.|. ++.|++-.
T Consensus 153 ~gk~~lVlGaG---G~g~aia~~L~~~Ga~~V~i~nR~ 187 (315)
T 3tnl_A 153 IGKKMTICGAG---GAATAICIQAALDGVKEISIFNRK 187 (315)
T ss_dssp TTSEEEEECCS---HHHHHHHHHHHHTTCSEEEEEECS
T ss_pred cCCEEEEECCC---hHHHHHHHHHHHCCCCEEEEEECC
Confidence 35678888888 334456667778898 78887643
No 196
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=23.49 E-value=1.4e+02 Score=26.32 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=32.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHH
Q 017487 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINA 285 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~ 285 (370)
.+.+++||+-|. .++|.+..|.+.|.+|.++.-..-...+.+...+
T Consensus 151 ~~~~vvViGgG~---ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~ 196 (314)
T 4a5l_A 151 RNKVLMVVGGGD---AAMEEALHLTKYGSKVIILHRRDAFRASKTMQER 196 (314)
T ss_dssp TTSEEEEECSSH---HHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHH
T ss_pred CCCeEEEECCCh---HHHHHHHHHHHhCCeeeeecccccccccchhhhh
Confidence 356799999886 4667888898889999999755444444443333
No 197
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=23.33 E-value=1.2e+02 Score=26.93 Aligned_cols=57 Identities=18% Similarity=0.053 Sum_probs=38.4
Q ss_pred EEEEEechhH--HHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcC-----CeEEEEecC
Q 017487 241 VTITAFSKIV--GLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKT-----NRLVTVEEG 299 (370)
Q Consensus 241 v~Iia~G~~~--~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~-----~~vvvvEe~ 299 (370)
++|++-|..- ....++++.|+++|+.+-.|-+-. ..|.+.|+++.... ..++.+++-
T Consensus 132 iillTDG~~~d~~~~~~~~~~l~~~gv~i~~igiG~--~~~~~~L~~iA~~~~~~g~~~~~~~~~~ 195 (281)
T 4hqf_A 132 VVILTDGIPDSIQDSLKESRKLSDRGVKIAVFGIGQ--GINVAFNRFLVGCHPSDGKCNLYADSAW 195 (281)
T ss_dssp EEEEESSCCSCHHHHHHHHHHHHHTTCEEEEEEESS--SCCHHHHHHHTTSCSSSSCCTTEEEECG
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHCCCEEEEEeCCC--ccCHHHHHhhhCCCCCCCCCceEEecch
Confidence 5566666432 367788889999998888777654 46788777665442 256776654
No 198
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=22.86 E-value=3.9e+02 Score=25.75 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=43.3
Q ss_pred CcEEEEEec-hhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHh---c--CCeEEEEecCCCCCChHHHHHHH
Q 017487 239 KDVTITAFS-KIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVR---K--TNRLVTVEEGFPQHGVGAEICAS 312 (370)
Q Consensus 239 ~dv~Iia~G-~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~---~--~~~vvvvEe~~~~GGlg~~i~~~ 312 (370)
..|.||+-| |-...+.+|++.|++-|+..+ +.+.++.-.+... .+.++ + .+.|+++=-+. .+.|.+-++..
T Consensus 266 ~~V~Ii~gs~SD~~~~~~a~~~l~~~gi~~~-v~V~saHR~p~~~-~~~~~~~~~~g~~~viIa~AG~-~a~Lpgvva~~ 342 (425)
T 2h31_A 266 CRVVVLMGSTSDLGHCEKIKKACGNFGIPCE-LRVTSAHKGPDET-LRIKAEYEGDGIPTVFVAVAGR-SNGLGPVMSGN 342 (425)
T ss_dssp CEEEEEESCGGGHHHHHHHHHHHHHTTCCEE-EEECCTTTCHHHH-HHHHHHHHTTCCCEEEEEECCS-SCCHHHHHHHH
T ss_pred CeEEEEecCcccHHHHHHHHHHHHHcCCceE-EeeeeccCCHHHH-HHHHHHHHHCCCCeEEEEEcCc-ccchHhHHhcc
Confidence 356666655 777889999999999898644 3334454445443 33333 2 22366555554 47788766644
No 199
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=22.85 E-value=58 Score=28.02 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=33.6
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEecc--------------ccCCCHHHHHHH-HhcCCeEEEE
Q 017487 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRS--------------IRPLDRSTINAS-VRKTNRLVTV 296 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~--------------l~P~d~~~i~~~-~~~~~~vvvv 296 (370)
...++|+++|... ...++.|.++|. +.+++-.. -.+.|.+.+.+. +.+.+.+++.
T Consensus 9 ~~~viI~G~G~~G---~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (234)
T 2aef_A 9 SRHVVICGWSEST---LECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVD 78 (234)
T ss_dssp -CEEEEESCCHHH---HHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEEC
T ss_pred CCEEEEECCChHH---HHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEc
Confidence 3468899888544 345667777788 88886421 134455666554 5566665553
No 200
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=22.80 E-value=1.3e+02 Score=22.18 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=32.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhc---CCceeEEEecccc
Q 017487 237 EGKDVTITAFSKIVGLSLKAAEILAKE---GISAEVINLRSIR 276 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~---Gi~v~Vi~~~~l~ 276 (370)
+|.++.|=|.|.....|...++.|++. |+++.-+++.+-.
T Consensus 25 ~g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~ 67 (87)
T 1nh9_A 25 SNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDK 67 (87)
T ss_dssp HCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC
T ss_pred CCCEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEE
Confidence 457899999999999999999999866 4677777777654
No 201
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=22.31 E-value=1.4e+02 Score=28.53 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=37.5
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEec-------------cccCCCHHHHHHHHhcCCeEEEEec
Q 017487 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLR-------------SIRPLDRSTINASVRKTNRLVTVEE 298 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~-------------~l~P~d~~~i~~~~~~~~~vvvvEe 298 (370)
+++.+.|++-|........+ +++.|+++-++|.. .....|.+.+.+.+.+.+. |+.|-
T Consensus 34 ~~~~IlIlG~G~lg~~~~~a---a~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~-V~~~~ 104 (419)
T 4e4t_A 34 PGAWLGMVGGGQLGRMFCFA---AQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEA-VSTEF 104 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHH---HHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSE-EEECC
T ss_pred CCCEEEEECCCHHHHHHHHH---HHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCE-EEEcc
Confidence 56679999988765544444 44559999998853 1122466778887776654 44553
No 202
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=22.21 E-value=85 Score=25.01 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=24.7
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017487 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
.+..++|+++|.+-.. .+..|.+.|.++.+++.
T Consensus 18 ~~~~v~IiG~G~iG~~---la~~L~~~g~~V~vid~ 50 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSL---IANLASSSGHSVVVVDK 50 (155)
T ss_dssp CCCEEEEECCSHHHHH---HHHHHHHTTCEEEEEES
T ss_pred CCCcEEEECCCHHHHH---HHHHHHhCCCeEEEEEC
Confidence 3457999999876654 45567778999999875
No 203
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.16 E-value=1.9e+02 Score=21.83 Aligned_cols=109 Identities=22% Similarity=0.252 Sum_probs=58.1
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCe-E--EEEecCCCCCChHHHHHHHHHhhc
Q 017487 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNR-L--VTVEEGFPQHGVGAEICASVIEES 317 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~-v--vvvEe~~~~GGlg~~i~~~l~~~~ 317 (370)
++|+.+..--....+-.+.++++|.+++-+.-++ -+ .+.|.+.++++.. + +++++ --|++....++..
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspq--el-kdsieelvkkynativvvvvdd----kewaekairfvks-- 73 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQ--EL-KDSIEELVKKYNATIVVVVVDD----KEWAEKAIRFVKS-- 73 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHH--HH-HHHHHHHTTCCCCEEEEEECSS----HHHHHHHHHHHHH--
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHH--HH-HHHHHHHHHHhCCeEEEEEEcc----HHHHHHHHHHHHh--
Confidence 4556666555666667778889999988764322 22 3457788888863 2 33333 2355554444433
Q ss_pred cCCCCCCEEEEecCCCCCC----CHHHHHH-Hh----CCCHHHHHHHHHHHHhc
Q 017487 318 FGYLDAPVERIAGADVPMP----YAANLER-MA----VPQVEDIVRAAKRACYR 362 (370)
Q Consensus 318 ~~~l~~~~~~ig~~d~~~~----~~~~l~~-~~----gl~~~~I~~~i~~~l~~ 362 (370)
++++++-+ +.|.--. +..+..+ .+ .-+|++..+...+++.+
T Consensus 74 ---lgaqvlii-iydqdqnrleefsrevrrrgfevrtvtspddfkkslerlire 123 (134)
T 2l69_A 74 ---LGAQVLII-IYDQDQNRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIRE 123 (134)
T ss_dssp ---HCCCCEEE-EECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHH
T ss_pred ---cCCeEEEE-EEeCchhHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHH
Confidence 34555433 2232110 1111111 11 24678877777777654
No 204
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=22.06 E-value=62 Score=29.52 Aligned_cols=31 Identities=26% Similarity=0.147 Sum_probs=23.8
Q ss_pred CcEEEEEechhHHHHHHHHHHHHhcCCceeEEEe
Q 017487 239 KDVTITAFSKIVGLSLKAAEILAKEGISAEVINL 272 (370)
Q Consensus 239 ~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~ 272 (370)
-||+||+-|..=. .+|-.|.++|++|.|++-
T Consensus 5 yDViIVGaGpaGl---~~A~~La~~G~~V~v~Er 35 (397)
T 3oz2_A 5 YDVLVVGGGPGGS---TAARYAAKYGLKTLMIEK 35 (397)
T ss_dssp EEEEEECCSHHHH---HHHHHHHHTTCCEEEECS
T ss_pred CCEEEECcCHHHH---HHHHHHHHCCCcEEEEeC
Confidence 3899999885432 355678889999999984
No 205
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=22.06 E-value=1.8e+02 Score=26.30 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=13.1
Q ss_pred CHHHHHHHHhcCCeEEEEecCC
Q 017487 279 DRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 279 d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
|.+.|.+.+++++.++++||-.
T Consensus 166 ~l~~i~~l~~~~~~~li~De~~ 187 (393)
T 3kgw_A 166 PLDGFGELCHRYQCLLLVDSVA 187 (393)
T ss_dssp CCTTHHHHHHHTTCEEEEECTT
T ss_pred cHHHHHHHHHHcCCEEEEECCc
Confidence 4455666666666666666643
No 206
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.75 E-value=85 Score=25.67 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=24.3
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhc-CCceeEEEe
Q 017487 238 GKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINL 272 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~-Gi~v~Vi~~ 272 (370)
+.+++|+++|.+-.. .++.|.+. |.++.++|.
T Consensus 39 ~~~v~IiG~G~~G~~---~a~~L~~~~g~~V~vid~ 71 (183)
T 3c85_A 39 HAQVLILGMGRIGTG---AYDELRARYGKISLGIEI 71 (183)
T ss_dssp TCSEEEECCSHHHHH---HHHHHHHHHCSCEEEEES
T ss_pred CCcEEEECCCHHHHH---HHHHHHhccCCeEEEEEC
Confidence 457999999876654 45567777 999999875
No 207
>3le1_A Phosphotransferase system, HPR-related proteins; HPR PTS phosphotransfer, kinase; 1.51A {Thermoanaerobacter tengcongensis} SCOP: d.94.1.0 PDB: 3le3_A 3lnw_A 3lfg_A 3le5_A
Probab=21.73 E-value=92 Score=22.95 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=25.4
Q ss_pred eeCCcEEEEEechhHHHHHHHHHHHHhcCC
Q 017487 236 REGKDVTITAFSKIVGLSLKAAEILAKEGI 265 (370)
Q Consensus 236 ~~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi 265 (370)
+.|..++|.+.|.-...|+++...|-+.|+
T Consensus 56 ~~G~~i~i~a~G~De~~A~~~l~~l~~~~f 85 (88)
T 3le1_A 56 SQGNVVKLSAEGDDEEEAIKALVDLIESKF 85 (88)
T ss_dssp CTTCEEEEEEESTTHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEEEEeCCCHHHHHHHHHHHHHhcc
Confidence 567889999999999999999888866654
No 208
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=21.55 E-value=55 Score=28.47 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=25.8
Q ss_pred CCcEEEEEechhHHH--HHHHHHHHHhcCCceeEEEecc
Q 017487 238 GKDVTITAFSKIVGL--SLKAAEILAKEGISAEVINLRS 274 (370)
Q Consensus 238 g~dv~Iia~G~~~~~--al~Aa~~L~~~Gi~v~Vi~~~~ 274 (370)
+.++++.-+|+.... +.+.++.|+++|.++.||=-++
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~~~g~eV~vv~T~~ 43 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLIAEGAEVRPVVSYT 43 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHHHTTCEEEEEECC-
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHHhCCCEEEEEEehH
Confidence 456777777865543 6778888888898888774433
No 209
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=21.46 E-value=52 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=20.0
Q ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCceeEE
Q 017487 238 GKDVTITAFSKIVGLSLKAAEILAKEGISAEVI 270 (370)
Q Consensus 238 g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi 270 (370)
+..+++.+.+.....+..|+..|++.|+++.++
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l 104 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKEL 104 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEE
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEe
Confidence 344555554432135667888899889864444
No 210
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=21.24 E-value=3e+02 Score=21.52 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=62.5
Q ss_pred cEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCC--HHHHHHHHhcC---CeEEEEecCCCCCChHHHHHHHHH
Q 017487 240 DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLD--RSTINASVRKT---NRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 240 dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d--~~~i~~~~~~~---~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
.++|++-|.......++++.+-.+--++..+++..=...+ .+.+++.+++. +.++++=| ..||--..++..+.
T Consensus 3 ~iii~sHG~~A~gl~~~~~~i~G~~~~v~ai~~~~~~~~~~~~~~i~~~i~~~~~~~gvliLtD--l~GGSp~n~a~~~~ 80 (135)
T 1pdo_A 3 AIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVD--TWGGSPFNAASRIV 80 (135)
T ss_dssp EEEEECSBTHHHHHHHHHHHHHCCCSSEEEECBCTTCCHHHHHHHHHHHHTTSCCTTCEEEEES--STTSHHHHHHHHHH
T ss_pred eEEEEeChHHHHHHHHHHHHHcCCcCCEEEEEeeCCCCHHHHHHHHHHHHHhcCCCCCEEEEEE--CCCCCHHHHHHHHH
Confidence 4789999998888889999875333467777654221111 23456667654 24555544 23665444454444
Q ss_pred hhccCCCCCCEEEEecCCCCCCCHHHHHHHh-CCCHHHHHHHHHHHH
Q 017487 315 EESFGYLDAPVERIAGADVPMPYAANLERMA-VPQVEDIVRAAKRAC 360 (370)
Q Consensus 315 ~~~~~~l~~~~~~ig~~d~~~~~~~~l~~~~-gl~~~~I~~~i~~~l 360 (370)
.+ ..++.-++.-+.|.-- +.+.... +.+.+++++.+.+.-
T Consensus 81 ~~-----~~~v~vi~GvNlpmll-e~~~~~~~~~~l~el~~~~~~~g 121 (135)
T 1pdo_A 81 VD-----KEHYEVIAGVNIPMLV-ETLMARDDDPSFDELVALAVETG 121 (135)
T ss_dssp TT-----CTTEEEEESCCHHHHH-HHHHHHTTCCCHHHHHHHHHHHH
T ss_pred hc-----cCCEEEEeCCCHHHHH-HHHHhcccCCCHHHHHHHHHHHh
Confidence 32 1356667655443210 1111122 567777777766544
No 211
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=21.02 E-value=2.3e+02 Score=22.75 Aligned_cols=60 Identities=18% Similarity=0.122 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCceeEEEeccccC-----------------CCHHHHHHHHhcCCeEEEEecCCCCCChHHHHHHHHH
Q 017487 253 SLKAAEILAKEGISAEVINLRSIRP-----------------LDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVI 314 (370)
Q Consensus 253 al~Aa~~L~~~Gi~v~Vi~~~~l~P-----------------~d~~~i~~~~~~~~~vvvvEe~~~~GGlg~~i~~~l~ 314 (370)
....++.+. +|++++++|+..... -|.+.+.+.+..++.||+.=- ...+++...+..++.
T Consensus 19 t~~la~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P-~y~~~~p~~lK~~iD 95 (184)
T 1rli_A 19 TDVLAEKAV-QGFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATP-IYWFGMSGTLKLFID 95 (184)
T ss_dssp HHHHHHHHH-TTTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEE-CBTTBCCHHHHHHHH
T ss_pred HHHHHHHHH-cCCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeC-ccccCCcHHHHHHHH
Confidence 344455443 467888888876421 133456666778887665443 345888877776664
No 212
>1d1q_A Tyrosine phosphatase (E.C.3.1.3.48); beta-alpha-beta, hydrolase; HET: 4NP; 1.70A {Saccharomyces cerevisiae} SCOP: c.44.1.1 PDB: 1d2a_A* 1d1p_A*
Probab=20.96 E-value=92 Score=25.55 Aligned_cols=38 Identities=8% Similarity=0.236 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEEEecCC
Q 017487 255 KAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGF 300 (370)
Q Consensus 255 ~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvvvEe~~ 300 (370)
.|.+.|++.||+++ . .-++++.+.+ ...+.||++++.+
T Consensus 61 ~a~~~l~~~Gid~s-~---~ar~l~~~~~----~~~DlIl~M~~~~ 98 (161)
T 1d1q_A 61 RTVSICKQHGVKIN-H---KGKQIKTKHF----DEYDYIIGMDESN 98 (161)
T ss_dssp HHHHHHHHTTCCCC-C---CBCBCCGGGG----GTCSEEEESSHHH
T ss_pred HHHHHHHHcCcCCC-c---eEeECCHHHH----hhCCEEEEeCHHH
Confidence 35667778899987 3 3455555533 4578899998743
No 213
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=20.91 E-value=85 Score=28.62 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=35.4
Q ss_pred eCCcEEEEEechhHHHHHHHHHHHHhcCCceeEEEeccccCCCHHHHHHHHhcCCeEEE
Q 017487 237 EGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVT 295 (370)
Q Consensus 237 ~g~dv~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvv 295 (370)
+|++++||+.|..+... ++..|..+|-.+.+.+-++ +.+.+.+++.+-||+
T Consensus 149 ~Gk~vvVvG~s~iVG~p--lA~lL~~~gAtVtv~~~~t------~~L~~~~~~ADIVI~ 199 (276)
T 3ngx_A 149 HENTVTIVNRSPVVGRP--LSMMLLNRNYTVSVCHSKT------KDIGSMTRSSKIVVV 199 (276)
T ss_dssp CSCEEEEECCCTTTHHH--HHHHHHHTTCEEEEECTTC------SCHHHHHHHSSEEEE
T ss_pred CCCEEEEEcCChHHHHH--HHHHHHHCCCeEEEEeCCc------ccHHHhhccCCEEEE
Confidence 68899999999877765 3456777788888887443 335566777764443
No 214
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=20.89 E-value=90 Score=28.57 Aligned_cols=57 Identities=14% Similarity=0.141 Sum_probs=34.9
Q ss_pred CcEEEEEechhH--HHHHHHHHHHHhcCC-ceeEEEeccccCCCHHHHHHHHhcCCeEEE
Q 017487 239 KDVTITAFSKIV--GLSLKAAEILAKEGI-SAEVINLRSIRPLDRSTINASVRKTNRLVT 295 (370)
Q Consensus 239 ~dv~Iia~G~~~--~~al~Aa~~L~~~Gi-~v~Vi~~~~l~P~d~~~i~~~~~~~~~vvv 295 (370)
.++++|.+-+.. ....+..+.+++.|+ ++++++++.-.-.+.+.+.+.+.+.+.|++
T Consensus 57 ~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v 116 (291)
T 3en0_A 57 AIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFM 116 (291)
T ss_dssp CEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEE
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEE
Confidence 578888654322 223334445666699 789998876542344456677888876554
No 215
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=20.85 E-value=1.2e+02 Score=21.09 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=38.9
Q ss_pred EEEEEechhHHHHHHHHHHHHhcCCceeEEEecccc-CCCHHHHHHHHhc------CCeEEEEecCCCCCChHHHHHHHH
Q 017487 241 VTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIR-PLDRSTINASVRK------TNRLVTVEEGFPQHGVGAEICASV 313 (370)
Q Consensus 241 v~Iia~G~~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~-P~d~~~i~~~~~~------~~~vvvvEe~~~~GGlg~~i~~~l 313 (370)
++|.+ -...+.+.+|...|++.|++.+++++.... |...+.+.+.... +=++++++. ...||+.. +.+++
T Consensus 6 v~ly~-~~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i~g-~~i~g~~~-i~~~~ 82 (89)
T 3msz_A 6 VKIYT-RNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDD-EHIGGFTE-LKANA 82 (89)
T ss_dssp EEEEE-CTTCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEETT-EEEESHHH-HHHTH
T ss_pred EEEEE-cCCChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEECC-EEEeChHH-HHHHH
Confidence 44443 245677888888899999999888754321 1111234333322 224566644 45688664 34343
No 216
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=20.85 E-value=43 Score=30.08 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=15.8
Q ss_pred eCCHHHHHHHHHHHHhCCCCEEEE
Q 017487 181 PYSSEDARGLLKAAIRDPDPVVFL 204 (370)
Q Consensus 181 P~d~~e~~~~l~~a~~~~~Pv~i~ 204 (370)
|.+.++....+....+....|.++
T Consensus 59 ~~~~~~~~~~i~~~~~~G~~Va~L 82 (264)
T 3ndc_A 59 PMSLDAIIDTIAEAHAAGQDVARL 82 (264)
T ss_dssp TSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEE
Confidence 455666666666666667777775
No 217
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=20.45 E-value=1.7e+02 Score=26.03 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEecccc--C-------------------------------C--CHHHHHHHHhcCCeE
Q 017487 249 IVGLSLKAAEILAKEGISAEVINLRSIR--P-------------------------------L--DRSTINASVRKTNRL 293 (370)
Q Consensus 249 ~~~~al~Aa~~L~~~Gi~v~Vi~~~~l~--P-------------------------------~--d~~~i~~~~~~~~~v 293 (370)
....+..+++.|++.|.+++++|+.... | + |...+.+.+...+.|
T Consensus 18 t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~l~~AD~I 97 (273)
T 1d4a_A 18 NYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLV 97 (273)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHHHHHHHHHHHhCCEE
Confidence 3445556677788889999999998654 1 1 112233447777766
Q ss_pred EEEecCCCCCChHHHHHHHHHh
Q 017487 294 VTVEEGFPQHGVGAEICASVIE 315 (370)
Q Consensus 294 vvvEe~~~~GGlg~~i~~~l~~ 315 (370)
|+.= -...+++.+.+..++-.
T Consensus 98 V~~~-P~y~~s~Pa~LK~~iDr 118 (273)
T 1d4a_A 98 IFQF-PLQWFGVPAILKGWFER 118 (273)
T ss_dssp EEEE-ECBTTBCCHHHHHHHHH
T ss_pred EEEC-chhhccCCHHHHHHHHH
Confidence 5443 23458888888777653
Done!