RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 017489
(370 letters)
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 775 bits (2002), Expect = 0.0
Identities = 318/370 (85%), Positives = 342/370 (92%), Gaps = 2/370 (0%)
Query: 1 MELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQAR 60
+ELKLPREGA+FC+QDCFKA+W+SHKSVH KAKLS+ G+NS +EGW YC+KKGQAR
Sbjct: 27 LELKLPREGASFCSQDCFKAAWSSHKSVHTKAKLSS--IGQNSDAPAEGWLYCLKKGQAR 84
Query: 61 TPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIE 120
T KLP FDWTG LRPYPIS + VP +I PDWALDGTPK+EPNSDLQH VEIKTP+QI+
Sbjct: 85 TSKLPDFDWTGPLRPYPISPRRVVPDHIPKPDWALDGTPKIEPNSDLQHSVEIKTPEQIQ 144
Query: 121 RMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSV 180
RMRETCRIAREVLDAAAR I+PGVTTDEIDRVVHEATI AGGYPSPLNYHFFPKSCCTSV
Sbjct: 145 RMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFFPKSCCTSV 204
Query: 181 NEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLE 240
NEVICHGIPD+RKLEDGDIVN+DVTVYYKG HGDLNET+FVGN DEASRQLV+CTYECLE
Sbjct: 205 NEVICHGIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFVGNVDEASRQLVKCTYECLE 264
Query: 241 KAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGV 300
KAI+IVKPGVR+RE+GEVINRHATMSG SVVKSYCGHGIGELFHCAPNIPHY+RNKAVGV
Sbjct: 265 KAIAIVKPGVRYREVGEVINRHATMSGLSVVKSYCGHGIGELFHCAPNIPHYARNKAVGV 324
Query: 301 MKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPS 360
MK GQ FTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPS
Sbjct: 325 MKAGQVFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPS 384
Query: 361 SPKVYPWLNA 370
SP V+PWL
Sbjct: 385 SPDVFPWLKP 394
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 410 bits (1057), Expect = e-145
Identities = 131/237 (55%), Positives = 158/237 (66%)
Query: 119 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 178
IE MRE RI EVLD A+ I+PGVTT E+D++ HE G YP+PL Y+ FPKS CT
Sbjct: 1 IEGMREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPKSICT 60
Query: 179 SVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYEC 238
SVNEV+CHGIPD R L+DGDIVNIDV V G HGD T+ VG E +++LV+ T E
Sbjct: 61 SVNEVVCHGIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIVGEVSEEAKKLVEVTEEA 120
Query: 239 LEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAV 298
L K I VKPG R +IG I ++A +G+SVV+ + GHGIG FH P IP+Y R
Sbjct: 121 LYKGIEAVKPGNRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKFHEEPQIPNYGRPGTG 180
Query: 299 GVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLT 355
+K G FTIEPMIN G + PDGWT VT DG SAQFEHT+L+TE G E+LT
Sbjct: 181 PKLKPGMVFTIEPMINLGTYEVVTLPDGWTVVTKDGSLSAQFEHTVLITEDGPEILT 237
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 391 bits (1006), Expect = e-137
Identities = 131/248 (52%), Positives = 160/248 (64%)
Query: 110 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 169
+ IKTP++IE+MR R+A EVLD ++PGVTT E+DR+ E G P+PL Y
Sbjct: 2 AITIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGY 61
Query: 170 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 229
H FPKS CTSVNEV+CHGIP + L++GDIVNIDVTV G HGD + T+ VG +
Sbjct: 62 HGFPKSICTSVNEVVCHGIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRTFGVGEISPEDK 121
Query: 230 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 289
+L + T E L I+ VKPG R +IG I ++A GFSVV+ YCGHGIG FH P I
Sbjct: 122 RLCEVTKEALYLGIAAVKPGARLGDIGHAIQKYAEAEGFSVVREYCGHGIGRKFHEEPQI 181
Query: 290 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTET 349
PHY V+K G FTIEPMINAG + DGWT VT DG SAQ+EHT+ VTE
Sbjct: 182 PHYGAPGDGPVLKEGMVFTIEPMINAGKREVKTLKDGWTVVTKDGSLSAQYEHTVAVTED 241
Query: 350 GVEVLTAR 357
G E+LT R
Sbjct: 242 GPEILTLR 249
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 351 bits (903), Expect = e-122
Identities = 117/253 (46%), Positives = 154/253 (60%), Gaps = 3/253 (1%)
Query: 110 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 169
++ IKTP++IE+MRE +IA + L A +++PGVTT E+D + E G YP+ L Y
Sbjct: 2 MISIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLGY 61
Query: 170 HFFPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-ADEA 227
FP C SVNEV+ HGIP D + L++GDIV IDV + G GD T+ VG +DE
Sbjct: 62 KGFPFPTCISVNEVVAHGIPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFVVGEVSDED 121
Query: 228 SRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAP 287
+++L++ T E L I VKPG R +IG I +A GFSVV++ GHGIG H P
Sbjct: 122 AKRLLEATKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNLTGHGIGRELHEEP 181
Query: 288 NIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP-DGWTAVTADGKRSAQFEHTLLV 346
+IP+Y ++ +K G F IEPMIN G P D WT VT DG SAQFEHT++V
Sbjct: 182 SIPNYGKDGTGVRLKEGMVFAIEPMINTGSGEVVEGPSDRWTLVTKDGSLSAQFEHTVIV 241
Query: 347 TETGVEVLTARLP 359
TE G E+LT R
Sbjct: 242 TEDGCEILTLRPE 254
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 332 bits (853), Expect = e-114
Identities = 121/247 (48%), Positives = 159/247 (64%)
Query: 111 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 170
+ +K+PD+IE++R+ R+A EVL+ R ++PGV+T E+DR+ + G P+ L Y+
Sbjct: 1 ISLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYY 60
Query: 171 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 230
FP S C SVNEV+ HGIPD + L+DGDIVNIDV V Y G HGD +T+ VG + +
Sbjct: 61 GFPGSVCISVNEVVIHGIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKTFLVGKISPEAEK 120
Query: 231 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIP 290
L++CT E L KAI KPG R EIG I ++A GFSVV+ YCGHGIG FH P IP
Sbjct: 121 LLECTEESLYKAIEEAKPGNRIGEIGAAIQKYAEAKGFSVVREYCGHGIGRKFHEEPQIP 180
Query: 291 HYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETG 350
+Y + +K G FTIEPM+N G DGWT T DG SAQFEHT+++T+ G
Sbjct: 181 NYGKKFTNVRLKEGMVFTIEPMVNTGTEEITTAADGWTVKTKDGSLSAQFEHTIVITDNG 240
Query: 351 VEVLTAR 357
E+LT R
Sbjct: 241 PEILTER 247
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 315 bits (810), Expect = e-107
Identities = 102/248 (41%), Positives = 139/248 (56%), Gaps = 1/248 (0%)
Query: 111 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 170
+EIK+P ++E+MR+ RI L + + PG+TT E+DR+ + G PSP Y+
Sbjct: 8 MEIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRLEEHGAIPSPEGYY 67
Query: 171 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 230
FP S C SVNE + HGIP R ++DGD+VNIDV+ Y G HGD T+ VG E + +
Sbjct: 68 GFPGSTCISVNEEVAHGIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAVGPVSEEAEK 127
Query: 231 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN-I 289
L + E L I VK G +IG I A +G+SVV+ GHG+G H P+ I
Sbjct: 128 LCRVAEEALWAGIKQVKAGRPLNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSLHEEPSVI 187
Query: 290 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTET 349
Y+ +++ G T +EP +N G DGWT VT D SAQFEHT++VT
Sbjct: 188 LTYTDPLPNRLLRPGMTLAVEPFLNLGAKDAETLDDGWTVVTPDKSLSAQFEHTVVVTRD 247
Query: 350 GVEVLTAR 357
G E+LT R
Sbjct: 248 GPEILTDR 255
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 258 bits (660), Expect = 1e-84
Identities = 115/251 (45%), Positives = 159/251 (63%), Gaps = 4/251 (1%)
Query: 108 QHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL 167
Q+ + IKTP+QIE++R+ C++ +LDA + GVTT+E+D + E P+PL
Sbjct: 38 QYDIIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSRELHKEYNAIPAPL 97
Query: 168 NYHF--FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD 225
NY FPK+ CTS+NEVICHGIP+ L++GDI+NIDV+ G +GD + +G
Sbjct: 98 NYGSPPFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGYYGDCSRMVMIGEVS 157
Query: 226 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHC 285
E +++ Q + ECL AI+I+KPG+ EIGEVI A GFSVV + GHG+G FH
Sbjct: 158 EIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYGFSVVDQFVGHGVGIKFHE 217
Query: 286 APNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWP-DGWTAVTADGKRSAQFEHTL 344
P +PH+ RN + + G FTIEPMIN G + P + W A T D + SAQ+EHT+
Sbjct: 218 NPYVPHH-RNSSKIPLAPGMIFTIEPMINVGKKEGVIDPINHWEARTCDNQPSAQWEHTI 276
Query: 345 LVTETGVEVLT 355
L+TETG E+LT
Sbjct: 277 LITETGYEILT 287
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 201 bits (514), Expect = 9e-64
Identities = 77/230 (33%), Positives = 99/230 (43%), Gaps = 23/230 (10%)
Query: 120 ERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTS 179
E MR+ RIA L+AA IRPGVT E+ + A + GG FP +
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGA----RGPAFPPIVASG 56
Query: 180 VNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECL 239
N + H IP R L+DGD+V IDV Y G H D+ T+ VG R+L + E
Sbjct: 57 PNAAVPHYIPSDRVLKDGDLVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEAVLEAQ 116
Query: 240 EKAISIVKPGVRFREIGEVINRHATMSGFS-VVKSYCGHGIGELFHCAPNIPHYSRNKAV 298
E AI+ VKPGV ++ G+ GHGIG H P+ SR
Sbjct: 117 EAAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGLGHGIGLDVH--DEGPYISRGGND 174
Query: 299 GVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 348
V++ G FTIEP I G + E T+LVTE
Sbjct: 175 RVLEPGMVFTIEPGI----------------YFIPGWGGVRIEDTVLVTE 208
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 165 bits (420), Expect = 3e-49
Identities = 85/246 (34%), Positives = 130/246 (52%)
Query: 110 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 169
++ IKT ++I+ M E+ ++ A++++PG+TT EI+ V G Y
Sbjct: 1 MITIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGY 60
Query: 170 HFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 229
+ +P + C SVN+ +CH P L +GDIV ID+ V G D TY VG + +
Sbjct: 61 NGYPYAICASVNDEMCHAFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRVGKVSDEAE 120
Query: 230 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNI 289
+L+ L K I G R +IG I + GFSV + + GHGIG+ H P I
Sbjct: 121 KLLLVAENALYKGIDQAVIGNRVGDIGYAIESYVANEGFSVARDFTGHGIGKEIHEEPAI 180
Query: 290 PHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTET 349
H+ + ++ G TIEP++N G+ ++ +GWTA T DGK SAQ+EHT+ +T+
Sbjct: 181 FHFGKQGQGPELQEGMVITIEPIVNVGMRYSKVDLNGWTARTMDGKLSAQYEHTIAITKD 240
Query: 350 GVEVLT 355
G +LT
Sbjct: 241 GPIILT 246
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 155 bits (394), Expect = 8e-46
Identities = 67/235 (28%), Positives = 98/235 (41%), Gaps = 32/235 (13%)
Query: 119 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 178
I R+R+ IA + AAA IRPGVT E+ + +A AGGYP+
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGGYPAG--------PTIV 52
Query: 179 SVNEV--ICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTY 236
+ H PD R+L++GD+V +D+ Y G H DL T+ +G + R+L +
Sbjct: 53 GSGARTALPHYRPDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVR 112
Query: 237 ECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK-SYCGHGIGELFHCAPNIPHYSRN 295
E E A++ ++PGV E+ G GHGIG H P +
Sbjct: 113 EAQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIGLEIHEPPVLKAGDD- 171
Query: 296 KAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETG 350
V++ G F +EP + G + E T+LVTE G
Sbjct: 172 ---TVLEPGMVFAVEPGLY-----------------LPGGGGVRIEDTVLVTEDG 206
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 149 bits (378), Expect = 1e-41
Identities = 77/249 (30%), Positives = 109/249 (43%), Gaps = 32/249 (12%)
Query: 113 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG-YPSPLNYHF 171
IK+P +I ++R+ IA L+AA IRPG+T EI + A G PS
Sbjct: 154 IKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAELEYALRKGGAEGPS------ 207
Query: 172 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQL 231
F + N + H P RKL DGD+V ID+ Y G D+ T+ +G + R++
Sbjct: 208 FDTIVASGENAALPHYTPSDRKLRDGDLVLIDLGGVYNGYCSDITRTFPIGKPSDEQREI 267
Query: 232 VQCTYECLEKAISIVKPGVRFREIGE----VINRHATMSGFSVVKSYCGHGIGELFHCAP 287
+ E E AI+ ++PGV E+ V+ + F + GHG+G
Sbjct: 268 YEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYF--LHGT-GHGVG-FVLDVH 323
Query: 288 NIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVT 347
P Y + ++ G F+IEP I P G G R E T+LVT
Sbjct: 324 EHPQYLSPGSDTTLEPGMVFSIEPGI--------YIPGGG------GVR---IEDTVLVT 366
Query: 348 ETGVEVLTA 356
E G EVLT
Sbjct: 367 EDGFEVLTR 375
>gnl|CDD|180918 PRK07281, PRK07281, methionine aminopeptidase; Reviewed.
Length = 286
Score = 126 bits (318), Expect = 6e-34
Identities = 72/280 (25%), Positives = 116/280 (41%), Gaps = 32/280 (11%)
Query: 110 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPL-- 167
++ +K+ +IE M + +I+PGV E++ V P +
Sbjct: 1 MITLKSAREIEAMDRAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENVLPLQIGV 60
Query: 168 --NYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDV--------------------- 204
+P + C +N+ + H P L++GD++ +D+
Sbjct: 61 DGAMMDYPYATCCGLNDEVAHAFPRHYILKEGDLLKVDMVLSEPLDKSIVDVSKLNFDNV 120
Query: 205 ------TVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEV 258
T Y+G D Y VG + + L+ T E + + I G R +IG
Sbjct: 121 EQMKKYTESYRGGLADSCWAYAVGTPSDEVKNLMDVTKEAMYRGIEQAVVGNRIGDIGAA 180
Query: 259 INRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVW 318
I +A G+ VV+ GHG+G H P +P+Y ++ G TIEPMIN G W
Sbjct: 181 IQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGTAGRGLRLREGMVLTIEPMINTGTW 240
Query: 319 R-DRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTAR 357
D GW T DG S Q+EH ++T+ G +LT++
Sbjct: 241 EIDTDMKTGWAHKTLDGGLSCQYEHQFVITKDGPVILTSQ 280
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 122 bits (310), Expect = 1e-32
Identities = 65/198 (32%), Positives = 96/198 (48%), Gaps = 18/198 (9%)
Query: 119 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 178
+E+ E +IA +V + AA++I+PG ++ V G P+ FP C
Sbjct: 2 LEKYLEAGKIASKVREEAAKLIKPGAKLLDVAEFVENRIRELGAKPA------FP--CNI 53
Query: 179 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 235
S+NEV H P D R +GD+V +D+ + G D T +G E LV+ +
Sbjct: 54 SINEVAAHYTPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKYE---DLVEAS 110
Query: 236 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIG--ELFHCAPNIPHYS 293
E LE AI +V+PGV EIG VI GF +++ GHG+ EL H P+IP+Y
Sbjct: 111 EEALEAAIEVVRPGVSVGEIGRVIEETIRSYGFKPIRNLTGHGLERYEL-HAGPSIPNY- 168
Query: 294 RNKAVGVMKVGQTFTIEP 311
++ G + IEP
Sbjct: 169 DEGGGVKLEEGDVYAIEP 186
Score = 38.6 bits (91), Expect = 0.003
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 338 AQFEHTLLVTETGVEVLTA 356
+Q EHT++VTE G EV T
Sbjct: 273 SQAEHTVIVTEDGCEVTTK 291
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 111 bits (280), Expect = 4e-29
Identities = 63/208 (30%), Positives = 90/208 (43%), Gaps = 34/208 (16%)
Query: 119 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY-PSPLNYHFFPKSCC 177
IE +R+ RIA + + I+PG+T E+ + G PS F
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEGPS------FDTIVA 54
Query: 178 TSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYE 237
+ N + HG+P RK+E+GD+V ID Y G D+ T VG + +++ + E
Sbjct: 55 SGPNSALPHGVPSDRKIEEGDLVLIDFGAIYDGYCSDITRTVAVGEPSDELKEIYEIVLE 114
Query: 238 CLEKAISIVKPGVRFREIG----EVINR--------HATMSGFSVVKSYCGHGIGELFHC 285
+ AI VKPGV +E+ +VI H T GHG+G H
Sbjct: 115 AQQAAIKAVKPGVTAKEVDKAARDVIEEAGYGEYFIHRT-----------GHGVGLEVHE 163
Query: 286 APNIPHYSRNKAVGVMKVGQTFTIEPMI 313
AP I S V++ G FTIEP I
Sbjct: 164 APYISPGSD----DVLEEGMVFTIEPGI 187
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 103 bits (260), Expect = 2e-25
Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 20/199 (10%)
Query: 119 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 178
+E+ RE I R+V A +I+PG+T EI V G P+ FP +
Sbjct: 1 LEKYREAGEIHRQVRKYAQSLIKPGMTLLEIAEFVENRIRELGAGPA------FPVNL-- 52
Query: 179 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVH--GDLNETYFVGNADEASRQLVQ 233
S+NE H P D L++GD+V +D G H G + ++ F + D L++
Sbjct: 53 SINECAAHYTPNAGDDTVLKEGDVVKLDF-----GAHVDGYIADSAFTVDFDPKYDDLLE 107
Query: 234 CTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGE-LFHCAPNIPHY 292
E L AI P VR EIGE I GF +++ GH I H +IP+
Sbjct: 108 AAKEALNAAIKEAGPDVRLGEIGEAIEEVIESYGFKPIRNLTGHSIERYRLHAGKSIPNV 167
Query: 293 SRNKAVGVMKVGQTFTIEP 311
+ ++ G + IEP
Sbjct: 168 -KGGEGTRLEEGDVYAIEP 185
Score = 39.5 bits (93), Expect = 0.002
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 333 DGKRSAQFEHTLLVTETGVEVLTA 356
G AQFEHT++V E G EV T
Sbjct: 268 SGGYVAQFEHTIIVREDGKEVTTR 291
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 101 bits (252), Expect = 2e-24
Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 16/203 (7%)
Query: 119 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 178
E+ E +I +V AA I PGV E+ V G P+ FP C
Sbjct: 5 AEKWIEAGKIHSKVRREAADRIVPGVKLLEVAEFVENRIRELGAEPA------FP--CNI 56
Query: 179 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 235
S+NE H P D +DGD+V +D+ + V G + +T + + LV+
Sbjct: 57 SINECAAHFTPKAGDKTVFKDGDVVKLDLGAH---VDGYIADTAITVDLGDQYDNLVKAA 113
Query: 236 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGE-LFHCAPNIPHYSR 294
+ L AI ++ GVR EIG+ I G + + GH + H +IP+
Sbjct: 114 KDALYTAIKEIRAGVRVGEIGKAIQEVIESYGVKPISNLTGHSMAPYRLHGGKSIPNVKE 173
Query: 295 NKAVGVMKVGQTFTIEPMINAGV 317
++ G IEP GV
Sbjct: 174 RDTT-KLEEGDVVAIEPFATDGV 195
Score = 32.1 bits (73), Expect = 0.36
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 334 GKRSAQFEHTLLVTETGVEVLT 355
G AQ+EHT+LV E G EV T
Sbjct: 273 GGYVAQWEHTILVEEHGKEVTT 294
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 72.6 bits (179), Expect = 9e-15
Identities = 65/262 (24%), Positives = 100/262 (38%), Gaps = 43/262 (16%)
Query: 119 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 178
IE MR+ C I+ E AA + RPG++ E++ E + G +Y
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEF-EYEFRSRGARLAYSYI-----VAA 54
Query: 179 SVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQLVQCTYE 237
N I H + + + L+DGD+V ID Y G D+ T+ V G + R+L +
Sbjct: 55 GSNAAILHYVHNDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114
Query: 238 CLEKAISIVKPGVRFREI----GEVINRH-----------ATMSGFSVVKSYCGHGIGEL 282
+ AI+ KPGV + +I V+ + + HG+G
Sbjct: 115 AQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVESGAYAKFFPHGLGHY 174
Query: 283 F----H-CAPNIPHYSRNKAVGVMKVGQTFTIEP---MINAGVWRDRMWPDGWTAVTADG 334
H + + R + ++ G TIEP I + + G G
Sbjct: 175 LGLDVHDVGGYLRYLRRAR---PLEPGMVITIEPGIYFIPDLLDVPEYFRGG-------G 224
Query: 335 KRSAQFEHTLLVTETGVEVLTA 356
R E +LVTE G E LT
Sbjct: 225 IR---IEDDVLVTEDGPENLTR 243
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 71.5 bits (175), Expect = 8e-14
Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 56/263 (21%)
Query: 112 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEI---------DRVVHEA---TIT 159
+IKTP+++E++R C IA + R I+ G++ EI + +A TI
Sbjct: 126 QIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELEWFMRQQGAEKASFDTIV 185
Query: 160 AGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETY 219
A G+ L HG + + G+ V +D Y+G D+ T
Sbjct: 186 ASGWRGALP-----------------HGKASDKIVAAGEFVTLDFGALYQGYCSDMTRTL 228
Query: 220 FVGNADEASRQ-----LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY 274
V ++ + Q + AIS ++PGVR +++ + R T +G+ +
Sbjct: 229 LVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGH 288
Query: 275 -CGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTAD 333
GH IG H P +S ++ G T+EP +
Sbjct: 289 NTGHAIGIEVHED---PRFSPRDTT-TLQPGMLLTVEP-----------------GIYLP 327
Query: 334 GKRSAQFEHTLLVTETGVEVLTA 356
G+ + E +LVT G EVL A
Sbjct: 328 GQGGVRIEDVVLVTPQGAEVLYA 350
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 62.0 bits (150), Expect = 1e-10
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 101 VEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA 160
V+ +S + IK+P +I+R+R++ I + A+++IR G T+ E+ A +
Sbjct: 166 VDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVM-- 223
Query: 161 GGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYF 220
S HF + + IP + K GD++ D V G D+ T+
Sbjct: 224 ----SKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFV 279
Query: 221 VGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGHGI 279
VG E +R++ Q E +S+V PGV+ +++ + SG + + + GHG
Sbjct: 280 VGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGN 339
Query: 280 G 280
G
Sbjct: 340 G 340
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 61.3 bits (148), Expect = 1e-10
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 101 VEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA 160
V+ +S + IK+P +I+R+R++ I + A+++IR G T+ E+ A +
Sbjct: 83 VDSSSIFNELRVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVM-- 140
Query: 161 GGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYF 220
S HF + + IP + K GD++ D V G D+ T+
Sbjct: 141 ----SKSETHFSRFHLISVGADFSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFV 196
Query: 221 VGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGF-SVVKSYCGHGI 279
VG E +R++ Q E +S+V PGV+ +++ + SG + + + GHG
Sbjct: 197 VGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVIKKSGLPNYNRGHLGHGN 256
Query: 280 G 280
G
Sbjct: 257 G 257
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 60.5 bits (147), Expect = 4e-10
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 113 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEID-RVVHEATITAGGYPSPLNYHF 171
K+P++I +R I+ A RPG+ +++ + HE YPS Y+
Sbjct: 173 FKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNRHGARYPS---YNT 229
Query: 172 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQ 230
S N I H + ++ DGD+V ID YKG GD+ T+ V G A R+
Sbjct: 230 IVGS---GENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQRE 286
Query: 231 LVQCTYECLEKAISIVKPGVRFREIGEVINR 261
+ E LE ++ + +PG RE+ + R
Sbjct: 287 IYDIVLESLETSLRLYRPGTSIREVTGEVVR 317
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 59.6 bits (144), Expect = 8e-10
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 40/267 (14%)
Query: 97 GTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEA 156
G V+ + + IK+P +IE +R++ I + +AA+ IR G T E+ A
Sbjct: 161 GLKLVDSTALFNEIRMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAA 220
Query: 157 TITAGGYPSPLNYHFFPKSCCTSVNEVICHG-------IPDSRKLEDGDIVNIDVTVYYK 209
++ FP++ + N +I G I D+ + GD++ D +
Sbjct: 221 VMS------------FPETNFSRFN-LISVGDNFSPKIIADTTPAKVGDLIKFDCGIDVA 267
Query: 210 GVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFS 269
G DL T+ +G D+ ++Q+ E +S+V PGV+ + + + SG
Sbjct: 268 GYGADLARTFVLGEPDKLTQQIYDTIRTGHEHMLSMVAPGVKLKAVFDSTMAVIKTSGLP 327
Query: 270 -VVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWT 328
+ + GHG G +F +P S +A G ++E T
Sbjct: 328 HYNRGHLGHGDG-VFLGLEEVPFVS-TQATETFCPGMVLSLE-----------------T 368
Query: 329 AVTADGKRSAQFEHTLLVTETGVEVLT 355
G S E +L+T++G E L+
Sbjct: 369 PYYGIGVGSIMLEDMILITDSGFEFLS 395
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 53.4 bits (128), Expect = 8e-08
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 172 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 227
FP C SVN + H P L++GD+V ID+ + G + T+ VG A E
Sbjct: 77 FPT--CISVNNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEE 134
Query: 228 S-----RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGH 277
++ + E A+ +VKPG ++ E IN+ A G + V+ H
Sbjct: 135 PVTGRKADVIAAAHLAAEAALRLVKPGNTNTQVTEAINKVAHSYGCTPVEGMLSH 189
Score = 28.3 bits (63), Expect = 7.3
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 129 AREVLDAAARMIRPGVT----TDEIDRVVH 154
A +AA R+++PG T T+ I++V H
Sbjct: 147 AHLAAEAALRLVKPGNTNTQVTEAINKVAH 176
>gnl|CDD|238523 cd01090, Creatinase, Creatine amidinohydrolase. E.C.3.5.3.3.
Hydrolyzes creatine to sarcosine and urea.
Length = 228
Score = 51.0 bits (122), Expect = 2e-07
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 29/179 (16%)
Query: 186 HGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISI 245
H +RK++ GDI++++ G + L T F+ +A ++ + E+ + +
Sbjct: 69 HNPVTNRKVQRGDILSLNCFPMIAGYYTALERTLFLDEVSDAHLKIWEANVAVHERGLEL 128
Query: 246 VKPGVRFREIGEVINRHATMSGFSVVKSY-CGHGIGELFHCAPNIPHYSRNKAV------ 298
+KPG R ++I +N +++ GH G L H +Y R +
Sbjct: 129 IKPGARCKDIAAELNEMYREHDLLRYRTFGYGHSFGVLSH------YYGREAGLELREDI 182
Query: 299 -GVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLV-TETGVEVLT 355
V++ G ++EPMI M P+G A G R EH +LV E G E +T
Sbjct: 183 DTVLEPGMVVSMEPMI--------MLPEGQPG--AGGYR----EHDILVINENGAENIT 227
>gnl|CDD|238522 cd01089, PA2G4-like, Related to aminopepdidase M, this family
contains proliferation-associated protein 2G4. Family
members have been implicated in cell cycle control.
Length = 228
Score = 50.4 bits (121), Expect = 3e-07
Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 52/259 (20%)
Query: 119 IERMRETCRIAREVLDAAARMIRPGVTTDEI----DRVVHEATITAGGYPSPLNYH---F 171
+ + + +IA +VL + PG ++ D+++ E Y
Sbjct: 1 VTKYKTAGQIANKVLKQVISLCVPGAKVVDLCEKGDKLILEEL--GKVYKKEKKLEKGIA 58
Query: 172 FPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGD-----LNETYFVG 222
FP C SVN +CH P + L+DGD+V ID+ G H D + T VG
Sbjct: 59 FPT--CISVNNCVCHFSPLKSDATYTLKDGDVVKIDL-----GCHIDGYIAVVAHTIVVG 111
Query: 223 NADEASR-----QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGH 277
E ++ + LE A+ +++PG + +I E I + G + V+ H
Sbjct: 112 AEAETPVTGKKADVIAAAHYALEAALRLLRPGNQNSDITEAIQKVIVDYGCTPVEGVLSH 171
Query: 278 GIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRS 337
+ + + K V +K G F + +G+
Sbjct: 172 QLKRVVSSGEG-----KAKLVECVKHGLLFPYPVLY-----------------EKEGEVV 209
Query: 338 AQFEHTLLVTETGVEVLTA 356
AQF+ T+L+T GV VLT
Sbjct: 210 AQFKLTVLLTPNGVTVLTG 228
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 45.9 bits (109), Expect = 2e-05
Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 35/215 (16%)
Query: 117 DQIERMRETCRIAREVLDAAARMIRPGVT----TDEIDRVVHEATITAGGYPSPLNYHFF 172
+Q + +R + R+V A +I+PGV + I+ E I A G F
Sbjct: 156 EQYQDLRRAAEVHRQVRRYAQSVIKPGVKLIDICERIESKSRE-LIEADGLKCGWA---F 211
Query: 173 PKSCCTSVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVH--GDLNETYFVGNADEA 227
P C S+N H P D L D+ +D G H G + + F +
Sbjct: 212 PTGC--SLNHCAAHYTPNTGDKTVLTYDDVCKLDF-----GTHVNGRIIDCAFTVAFNPK 264
Query: 228 SRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV-----------VKSYCG 276
L+Q T + I VR +IG I + + V +++ G
Sbjct: 265 YDPLLQATKDATNTGIKEAGIDVRLSDIGAAIQE--VIESYEVEIKGKTYPIKSIRNLNG 322
Query: 277 HGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIE 310
H IG + H ++P + M+ G+ F IE
Sbjct: 323 HSIGPYIIHGGKSVPIVKGGENT-RMEEGELFAIE 356
Score = 30.5 bits (69), Expect = 1.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 334 GKRSAQFEHTLLVTETGVEVLTA 356
G ++Q EHT+L+ T EVL+
Sbjct: 444 GSYTSQMEHTILLRPTCKEVLSR 466
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 41.8 bits (98), Expect = 4e-04
Identities = 56/254 (22%), Positives = 99/254 (38%), Gaps = 41/254 (16%)
Query: 113 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATIT-----AGGYPS-- 165
+K+P +I MR RI + I PG+ ++ +++A I G YP+
Sbjct: 158 VKSPTEIAYMRIAARIVENMHQRIFERIEPGMRKCDLVAEIYDAGIRGADGFGGDYPAIV 217
Query: 166 PLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD 225
PL P + + H D ++ G+ ++ YK H L+ T F+G
Sbjct: 218 PL----LP----SGADASAPHLTWDDSPMKKGEGTFFEIAGCYKRYHCPLSRTVFLGKPT 269
Query: 226 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVK-SYCGHGIGELFH 284
+A + E +E ++ KPG +I + + + K S G+ IG +
Sbjct: 270 QAFLDAEKAVLEGMEAGLAAAKPGNTCEDIANAF--FKVLKKYGIHKDSRTGYPIGLSY- 326
Query: 285 CAPNIPHYSRNKAVG---VMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFE 341
P+ + + G V++ G TF G+W + +
Sbjct: 327 -PPDWGERTMSLRPGDNTVLQPGMTFHFMT----GLWMEDW--------------GLEIT 367
Query: 342 HTLLVTETGVEVLT 355
++L+TETGVE L+
Sbjct: 368 ESILITETGVECLS 381
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 35.2 bits (82), Expect = 0.050
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 21/73 (28%)
Query: 115 TPDQIERMRETCRIAREVLDAAA------RMIRPG--VTTD-EIDRVVHEATITAGGYPS 165
T R+ R+ RE++ A R I PG V TD EID V E TA
Sbjct: 417 TEQDWREFRDAIRLTREIMAQPALDPYRGREISPGADVQTDEEIDAFVREHAETA----- 471
Query: 166 PLNYHFFPKSCCT 178
YH P CT
Sbjct: 472 ---YH--P--SCT 477
>gnl|CDD|176893 cd08884, RHO_alpha_C_GbcA-like, C-terminal catalytic domain of GbcA
(glycine betaine catabolism A) from Pseudomonas
aeruginosa PAO1 and related aromatic ring hydroxylating
dioxygenases. C-terminal catalytic domain of GbcA
(glycine betaine catabolism A) from Pseudomonas
aeruginosa PAO1 and related Rieske-type non-heme iron
aromatic ring-hydroxylating oxygenases (RHOs, also known
as aromatic ring hydroxylating dioxygenases). RHOs
utilize non-heme Fe(II) to catalyze the addition of
hydroxyl groups to the aromatic ring, an initial step in
the oxidative degradation of aromatic compounds. RHOs
are composed of either two or three protein components,
and are comprised of an electron transport chain (ETC)
and an oxygenase. The ETC transfers reducing equivalents
from the electron donor to the oxygenase component,
which in turn transfers electrons to the oxygen
molecules. The oxygenase components are oligomers,
either (alpha)n or (alpha)n(beta)n. The alpha subunits
are the catalytic components and have an N-terminal
domain, which binds a Rieske-like 2Fe-2S cluster, and a
C-terminal domain which binds the non-heme Fe(II). The
Fe(II) is co-ordinated by conserved His and Asp
residues. GbcA is involved in glycine betaine (GB)
catabolism in Pseudomonas aeruginosa; it may remove a
methyl group from GB via a dioxygenase mechanism,
producing dimethylglycine and formaldehyde. This
subfamily belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket.
Length = 205
Score = 32.2 bits (74), Expect = 0.25
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 281 ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRD-RM-WPDGWTAVTADGKRSA 338
E +HCA P +R+ + + +P +R R G + T DGK A
Sbjct: 31 ECYHCAGVHPELARS----LSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVA 86
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog;
Provisional.
Length = 606
Score = 32.8 bits (75), Expect = 0.33
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 1 MELKLPREGAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSS 44
++ KLP + C+ CF +W H+ +H +A A EN +
Sbjct: 81 VKAKLPVSKSYHCSPKCFSDAWRHHRVLHERA---ASAVRENGN 121
>gnl|CDD|224842 COG1931, COG1931, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 140
Score = 30.8 bits (70), Expect = 0.48
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 110 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG------GY 163
V E +T +ER+RE R + +LD A ++ G+T +E+ +++ G
Sbjct: 42 VGEGRTLKSLERLRELLR-KQRILDTARMVLEKGLTGNEVTFYLNKQAAYVGRVNFVEED 100
Query: 164 PSPL 167
SPL
Sbjct: 101 ESPL 104
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics].
Length = 132
Score = 30.2 bits (68), Expect = 0.69
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 147 DEIDRVVHEATITAGGYPSPLNYHFFPKS 175
+E+++++ + TI GG +N PKS
Sbjct: 93 EELNKLLGDVTIAQGGVLPNINPGLLPKS 121
>gnl|CDD|234956 PRK01490, tig, trigger factor; Provisional.
Length = 435
Score = 30.5 bits (70), Expect = 1.7
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 188 IPDSRKLEDGDIVNIDVTVYYKGV 211
+P R E+GD V ID G
Sbjct: 152 VPVERPAENGDRVTIDFVGSIDGE 175
>gnl|CDD|217823 pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes
2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is
required for propionate catabolism. It catalyzes the
third step of the 2-methylcitric acid cycle.
Length = 445
Score = 30.4 bits (69), Expect = 1.7
Identities = 13/47 (27%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 126 CRIAREVLDAAARMIRP-GVTTDEIDRVV---HEATITAGGYPSPLN 168
R A DAA + R G DEI+ + E I P
Sbjct: 267 ERHAHSAADAALALRREEGDRADEIESIEIETFEVAIRIINKRGPPA 313
>gnl|CDD|234035 TIGR02860, spore_IV_B, stage IV sporulation protein B. SpoIVB, the
stage IV sporulation protein B of endospore-forming
bacteria such as Bacillus subtilis, is a serine
proteinase, expressed in the spore (rather than mother
cell) compartment, that participates in a proteolytic
activation cascade for Sigma-K. It appears to be
universal among endospore-forming bacteria and occurs
nowhere else [Cellular processes, Sporulation and
germination].
Length = 402
Score = 30.0 bits (68), Expect = 2.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 186 HGI--PDSRK---LEDGDIVNIDVTVYYKGVHG 213
H I D+ K +E+G IVN +T KG G
Sbjct: 220 HVITDIDTGKPISVENGQIVNSSITSIEKGRRG 252
>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 29.7 bits (67), Expect = 2.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 196 DGDIVNIDVTVYYKGVHGDLNETYF-VGNADEASRQLVQ 233
D IV++D V Y+ D + + V NA+ A RQLVQ
Sbjct: 83 DNVIVSVDAVVQYRVT--DPQKAVYNVENAEAALRQLVQ 119
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 28.2 bits (64), Expect = 3.0
Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 240 EKAISIVKP-GVRFREIGEVINR 261
E+ + I+KP GV+ IGE+I+R
Sbjct: 1 ERTLVIIKPDGVQRGLIGEIISR 23
>gnl|CDD|227872 COG5585, COG5585, NAD+--asparagine ADP-ribosyltransferase [Signal
transduction mechanisms].
Length = 417
Score = 29.4 bits (66), Expect = 3.2
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 13/135 (9%)
Query: 127 RIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 186
+ A +VL A G I R +H T+ + C V +
Sbjct: 177 KYANQVLKA------IGAKLSGITRQLH-GTVAGVKEAEVGEFPPVHPGCRNGFGGVKEN 229
Query: 187 GIPDSRKLED-----GDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEK 241
+ D + L+ D+ D+ Y K D NE + ++L + L+
Sbjct: 230 FVKDPKSLDQNPNIHDDLGKKDLKNYTKDPRADENEKLRQTQDRDLGKKLRKTGMPALKN 289
Query: 242 AISIVKPG-VRFREI 255
++P VR R+
Sbjct: 290 GEGQIRPKEVRIRKK 304
>gnl|CDD|224978 COG2067, FadL, Long-chain fatty acid transport protein [Lipid
metabolism].
Length = 440
Score = 29.3 bits (66), Expect = 3.8
Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 23/107 (21%)
Query: 9 GAAFCTQDCFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFD 68
G A+ D + + V + K G S ++ G A
Sbjct: 225 GVAYEINDNNRIGLSYRSKVKMDFK------GGYESSLNLGMAGLPIGPLA--------- 269
Query: 69 WTGTLRPYPISSKLTVPAYIEL-------PDWALDGTPKVEPNSDLQ 108
G + P L++PA EL WA+ G+ K S
Sbjct: 270 -LGGVTPGSGKLTLSLPASAELSGQHKVADQWAIHGSVKWTDWSSFD 315
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase. This domain found
associated with pfam00732.
Length = 139
Score = 28.1 bits (63), Expect = 4.4
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 96 DGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHE 155
G P ++PN P + +R R+AR +L AA + PG
Sbjct: 15 LGLPVIDPNYL-------SDPADLAALRAALRLARRILAAALVELTPGPVEVVPGAAEAS 67
>gnl|CDD|227919 COG5632, COG5632, N-acetylmuramoyl-L-alanine amidase [Cell envelope
biogenesis, outer membrane].
Length = 302
Score = 28.6 bits (64), Expect = 5.3
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 65 PHFDWTGTLRPYPISSKLTVPAY 87
H DW+G L P K A
Sbjct: 139 KHKDWSGKLCPARYLDKGRWDAV 161
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 28.5 bits (64), Expect = 5.9
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 120 ERMRETCRIAREVLDAAARM----IRPGVTTDEIDR------VVHEATITAGGYPSPLNY 169
+R R +A+ AA + +RPG + R A + G Y P+N+
Sbjct: 9 DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNW 68
Query: 170 HFFP 173
HF P
Sbjct: 69 HFKP 72
>gnl|CDD|222530 pfam14082, DUF4263, Domain of unknown function (DUF4263). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, archaea,
eukaryotes and viruses. Proteins in this family are
typically between 244 and 403 amino acids in length.
Length = 162
Score = 27.7 bits (62), Expect = 6.9
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 101 VEPNSDLQHVVEIKTPDQ---IERMRETCRIAREVLDAAARMIR 141
+ +SD +VEIK P+ + R + E+ A ++++
Sbjct: 52 ADKDSDNLVLVEIKRPNTNLFTKTPRGNGAPSAELSGAISQILD 95
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 28.3 bits (64), Expect = 6.9
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 190 DSRKLEDGDIVNIDVTVYYKGV 211
+ R E GD V ID + G
Sbjct: 143 ERRAAEKGDRVTIDFEGFIDGE 164
>gnl|CDD|129632 TIGR00541, hisDCase_pyru, histidine decarboxylase, pyruvoyl type.
This enzyme converts histadine to histamine in a single
step by catalyzing the release of CO2. This type is
synthesized as an inactive single chain precursor, then
cleaved into two chains. The Ser at the new N-terminus
at the cleavage site is converted to a pyruvoyl group
essential for activity. This type of histidine
decarboxylase appears is known so far only in some
Gram-positive bacteria, where it may play a role in
amino acid catabolism. There is also a pyridoxal
phosphate type histidine decarboxylase, as found in
human, where histamine is a biologically active amine
[Energy metabolism, Amino acids and amines].
Length = 310
Score = 28.1 bits (62), Expect = 7.2
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 73 LRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM 122
+ P I + +T Y+ L A+ G + P+ D + + I P+ ++ M
Sbjct: 250 MEPGEIGNAITCAPYVSLAIDAIPGGSILTPDEDFEILENISLPEWLDDM 299
>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 867
Score = 28.5 bits (64), Expect = 7.3
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 26/68 (38%)
Query: 75 PYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLD 134
P I+ +LTVP + TP I+ +RE +
Sbjct: 338 PEQIAKELTVPERV--------------------------TPWNIDELREYVLNGPDSWP 371
Query: 135 AAARMIRP 142
A +IRP
Sbjct: 372 GANYVIRP 379
>gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like
receiver domain and an HD-GYP domain [Transcription /
Signal transduction mechanisms].
Length = 360
Score = 27.7 bits (62), Expect = 9.4
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 102 EPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHE 155
P+S L T ++ E M+ + E+L ++ R+++ EI R HE
Sbjct: 228 IPDSIL-LKPGKLTSEEFEIMKGHPILGAEILKSSERLMQVAA---EIARHHHE 277
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.427
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,887,135
Number of extensions: 1800745
Number of successful extensions: 1888
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1810
Number of HSP's successfully gapped: 60
Length of query: 370
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 272
Effective length of database: 6,590,910
Effective search space: 1792727520
Effective search space used: 1792727520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)