RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017489
(370 letters)
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 574 bits (1482), Expect = 0.0
Identities = 165/349 (47%), Positives = 224/349 (64%), Gaps = 11/349 (3%)
Query: 17 CFKASWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRPY 76
F+ H +K LS + W Y +F +TG +RP+
Sbjct: 15 YFQGEKEDHLKTIVKKHLSPE---NFDPTNRKYWVY-----DDHLKNFVNFKFTGDVRPW 66
Query: 77 PISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAA 136
P+S VP++IE PD+A+ P+ E + + + ++I+R+RE C + R+ LD A
Sbjct: 67 PLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILGRKTLDYA 126
Query: 137 ARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLED 196
++ PGVTTDEIDR VHE I YPS LNY+ FPKSCCTSVNE++CHGIPD R L+
Sbjct: 127 HTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYRPLKS 186
Query: 197 GDIVNIDVTVYYKGVHGDLNETYFVGNADEA---SRQLVQCTYECLEKAISIVKPGVRFR 253
GDI+NID++V+YKGVH DLNETYFVG+ ++ ++LV+ Y L +AI KPG+ ++
Sbjct: 187 GDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYK 246
Query: 254 EIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMI 313
IG +I+ + + FSVV+SY GHG+G+LFH P +PH+ +NKAVG+MK G FTIEPMI
Sbjct: 247 NIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMI 306
Query: 314 NAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSP 362
N G + D +WPD WT+ T+DGK SAQFEHTLL+T GVE+LT R SP
Sbjct: 307 NQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITNNGVEILTKRTQDSP 355
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 550 bits (1419), Expect = 0.0
Identities = 189/348 (54%), Positives = 232/348 (66%), Gaps = 25/348 (7%)
Query: 21 SWTSHKSVHLKAKLSAPGTGENSSLVSEGWRYCIKKGQARTPKLPHFDWTGTLRP-YPIS 79
+ H H + + +TG LRP YP+
Sbjct: 2 GSSHHHHHHSSGL----------------------VPRGSHMLEDPYRYTGKLRPHYPLM 39
Query: 80 SKLTVPAYIELPDWALD--GTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAA 137
VP+YI+ PD+A G + E +++ + + IE MR CR+AREVLD AA
Sbjct: 40 PTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAA 99
Query: 138 RMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDG 197
MI+PGVTT+EID VH A I YPSPLNY+ FPKSCCTSVNEVICHGIPD R L++G
Sbjct: 100 GMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEG 159
Query: 198 DIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGE 257
DIVN+D+T+Y G HGDLNET+FVG D+ +R+LVQ TYECL +AI VKPGVR+RE+G
Sbjct: 160 DIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGN 219
Query: 258 VINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGV 317
+I +HA +GFSVV+SYCGHGI +LFH APN+PHY++NKAVGVMK G FTIEPMI G
Sbjct: 220 IIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGG 279
Query: 318 WRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPKVY 365
W+D WPDGWTAVT DGKRSAQFEHTLLVT+TG E+LT RL S+ +
Sbjct: 280 WQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSARPHF 327
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 530 bits (1369), Expect = 0.0
Identities = 141/286 (49%), Positives = 176/286 (61%), Gaps = 6/286 (2%)
Query: 70 TGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIA 129
L P +S VP +I P++ G P + S+ ++TP+ IE+MR RIA
Sbjct: 4 RTALSPGVLSPTRPVPNWIARPEYV--GKPAAQEGSE----PWVQTPEVIEKMRVAGRIA 57
Query: 130 REVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIP 189
L A + + PGVTTDE+DR+ HE + G YPS L Y FPKSCCTS+NEVICHGIP
Sbjct: 58 AGALAEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIP 117
Query: 190 DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPG 249
DS + DGDIVNIDVT Y GVHGD N T+ G+ + R LV T E +AI+ VKPG
Sbjct: 118 DSTVITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLVDRTREATMRAINTVKPG 177
Query: 250 VRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTI 309
IG VI +A G++VV+ + GHGIG FH + HY + +M+ G TFTI
Sbjct: 178 RALSVIGRVIESYANRFGYNVVRDFTGHGIGTTFHNGLVVLHYDQPAVETIMQPGMTFTI 237
Query: 310 EPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLT 355
EPMIN G +W DGWT VT D K +AQFEHTLLVT+TGVE+LT
Sbjct: 238 EPMINLGALDYEIWDDGWTVVTKDRKWTAQFEHTLLVTDTGVEILT 283
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 435 bits (1121), Expect = e-155
Identities = 109/258 (42%), Positives = 155/258 (60%), Gaps = 2/258 (0%)
Query: 111 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 170
++I T +MR ++A E LD ++P VTT+ ++ + H + P+PLNY
Sbjct: 6 IKIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYK 65
Query: 171 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 230
FPKS CTS+N V+CHGIP+ + L++GDIVNIDVTV G +GD + Y+VG+ ++
Sbjct: 66 GFPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKR 125
Query: 231 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIP 290
L+Q TY+ + K I +V+PG + +IG I +A +SVV+ Y GHGIG +FH P+I
Sbjct: 126 LIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSIL 185
Query: 291 HYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMW-PDGWTAVTADGKRSAQFEHTLLVTET 349
+Y RN +K G FT+EPMINAG + + DGWT T D SAQFEHT+ VT+
Sbjct: 186 NYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKD 245
Query: 350 GVEVLTARLPSSPKVYPW 367
G E+ T P P+
Sbjct: 246 GFEIFTLS-PKKLDYPPY 262
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 435 bits (1121), Expect = e-155
Identities = 119/254 (46%), Positives = 159/254 (62%), Gaps = 2/254 (0%)
Query: 111 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITA-GGYPSPLNY 169
+ IKTP+ IE+MR R+A EVL+ ++PGV+T E+DR+ ++ + + L Y
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGY 61
Query: 170 HFFPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEAS 228
H +PKS C S+NEV+CHGIP D++ L+DGDIVNIDVTV G HGD ++ + VG
Sbjct: 62 HGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMG 121
Query: 229 RQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPN 288
+L + T E L A+ +VKPG+ REIG I + GFSVV+ YCGHGIG FH P
Sbjct: 122 ERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQ 181
Query: 289 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 348
+ HY + V+K G TFTIEPM+NAG R DGWT T D SAQ+EHT++VT+
Sbjct: 182 VLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTD 241
Query: 349 TGVEVLTARLPSSP 362
G E+LT R +
Sbjct: 242 NGCEILTLRKDDTI 255
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 393 bits (1012), Expect = e-138
Identities = 76/249 (30%), Positives = 126/249 (50%), Gaps = 2/249 (0%)
Query: 111 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 170
+ +KT ++++ ++E I +V + +PG+TT E+D + E G +P++
Sbjct: 1 MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDE 60
Query: 171 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGN-ADEASR 229
FP C SVNE + HGIP R + +GD+VNIDV+ G + D ++ VG D +
Sbjct: 61 NFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQ 120
Query: 230 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAP-N 288
++ E AI+ VKPG + IG+ ++ A + V+K+ GHG+G H AP +
Sbjct: 121 KVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAH 180
Query: 289 IPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTE 348
+ +Y K ++ G IEP I++ + W T+D AQ EHT++VT+
Sbjct: 181 VLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTK 240
Query: 349 TGVEVLTAR 357
G + T
Sbjct: 241 DGPILTTKI 249
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 368 bits (946), Expect = e-128
Identities = 88/247 (35%), Positives = 138/247 (55%)
Query: 111 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 170
+ +K+P +IE M E+ + +V I+PG+T+ +I+ V + + GG + + Y
Sbjct: 2 ITLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYE 61
Query: 171 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 230
+ + C S+N+ ICHG P + L+DGD++ +D+ V KG D +Y VG + +
Sbjct: 62 GYKYATCCSINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDR 121
Query: 231 LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGELFHCAPNIP 290
L++ T + L I + G R +IG I + G+ VV+ + GHGIG H +P IP
Sbjct: 122 LMEVTKKALYLGIEQAQVGNRIGDIGHAIQTYVEGEGYGVVRDFVGHGIGPTIHESPMIP 181
Query: 291 HYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETG 350
HY +K G TIEPM+N G WR +M P+GWTA T DG S Q+EH+L +T+ G
Sbjct: 182 HYGEAGKGLRLKEGMVITIEPMVNTGTWRMKMDPNGWTAYTEDGGLSCQYEHSLAITKEG 241
Query: 351 VEVLTAR 357
+LT++
Sbjct: 242 PRILTSQ 248
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 367 bits (944), Expect = e-128
Identities = 101/257 (39%), Positives = 149/257 (57%), Gaps = 1/257 (0%)
Query: 102 EPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG 161
+ + H++ IKTP +IE+M++ + L ++I PG T +++ +V E
Sbjct: 5 KIHHHHHHMIRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLR 64
Query: 162 GYPSPLNYHFFPKSCCTSVNEVICHGIPDSRK-LEDGDIVNIDVTVYYKGVHGDLNETYF 220
P+ Y + + C SVNE + HG+P K ++GDIV++DV Y+G++GD TY
Sbjct: 65 VKPAFKGYGGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYI 124
Query: 221 VGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIG 280
VG DE ++LV+ T E LEKAI ++KPG+R ++ I GF+V++ Y GHG+G
Sbjct: 125 VGETDERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVG 184
Query: 281 ELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQF 340
H P IP+Y V++ G T IEPM++ G WR + DGWTAVT DG R A F
Sbjct: 185 RELHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHF 244
Query: 341 EHTLLVTETGVEVLTAR 357
EHT+L+TE G E+LT
Sbjct: 245 EHTILITENGAEILTKE 261
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 350 bits (901), Expect = e-121
Identities = 92/254 (36%), Positives = 126/254 (49%), Gaps = 7/254 (2%)
Query: 111 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 170
VE +TP +++ M I L A + GV+T E+D+V AG PS L YH
Sbjct: 32 VEQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYH 91
Query: 171 FFPKSCCTSVNEVICHGIP-DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASR 229
FP S C+SVN+ + HGIP + L DGD+V+ID G HGD T+ VG +
Sbjct: 92 GFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDE 151
Query: 230 QLVQCTYECLEKAISIVKPGVRFREIGEVINRHA------TMSGFSVVKSYCGHGIGELF 283
L + T +E I+ + PG R ++ I F +V Y GHGIG
Sbjct: 152 ALSEATRLSMEAGIAAMIPGNRLTDVSHAIELGTRAAEKQFDRAFGIVDGYGGHGIGRSM 211
Query: 284 HCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHT 343
H P +P+ ++ VG IEPM+ G + R+ D WT VT DG R+A +EHT
Sbjct: 212 HLDPFLPNEGAPGKGPLLAVGSVLAIEPMLTLGTTQTRVLADDWTVVTTDGSRAAHWEHT 271
Query: 344 LLVTETGVEVLTAR 357
+ VTE G +LT R
Sbjct: 272 VAVTEAGPRILTMR 285
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 219 bits (561), Expect = 1e-69
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 15/221 (6%)
Query: 119 IERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCT 178
E++ + IA++V + A ++ RPG+ E+ + + + GG P+ FP
Sbjct: 3 TEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNL 54
Query: 179 SVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCT 235
S+NE+ H P D+ L++GD + IDV V+ G D T VG ++ +L++
Sbjct: 55 SINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEED---ELMEAA 111
Query: 236 YECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSYCGHGIGE-LFHCAPNIPHYSR 294
E L AIS+ + GV +E+G+ I GF + + GH I H +IP+ R
Sbjct: 112 KEALNAAISVARAGVEIKELGKAIENEIRKRGFKPIVNLSGHKIERYKLHAGISIPNIYR 171
Query: 295 NKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGK 335
V+K G F IEP G + P +
Sbjct: 172 PHDNYVLKEGDVFAIEPFATIGAGQVIEVPPTLIYMYVRDV 212
Score = 43.4 bits (103), Expect = 5e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 330 VTADGKRSAQFEHTLLVTETGVEVLT 355
AQFEHT++V + V V T
Sbjct: 269 KEIRNGIVAQFEHTIIVEKDSVIVTT 294
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 220 bits (561), Expect = 1e-68
Identities = 42/266 (15%), Positives = 89/266 (33%), Gaps = 18/266 (6%)
Query: 95 LDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVH 154
+ D Q I + + + IA VL + GV+ +
Sbjct: 1 MGHHHHHHSGEDEQQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGD 60
Query: 155 EATITAGG---YPSPLNYHFFPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVY 207
+ G SVN +CH P L++GD+V ID+ V+
Sbjct: 61 AMIMEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVH 120
Query: 208 YKGVHGDLNETYFVGNADEA-----SRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH 262
G ++ T+ V A +++ + C E A+ +VKPG + ++ E N+
Sbjct: 121 VDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKV 180
Query: 263 ATMSGFSVVKSYCGHGIGELFHCAPN------IPHYSRNKAVGVMKVGQTFTIEPMINAG 316
A + ++ H + + ++ +V + + ++ ++++G
Sbjct: 181 AHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSG 240
Query: 317 VWRDRMWPDGWTAVTADGKRSAQFEH 342
+ + T D + +
Sbjct: 241 EGKAKDAGQRTTIYKRDPSKQYGLKM 266
Score = 42.8 bits (101), Expect = 1e-04
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 330 VTADGKRSAQFEHTLLVTETGVEVLTARLPSSPKVY 365
+G+ AQF+ T+L+ G +T P P +Y
Sbjct: 316 YEKEGEFVAQFKFTVLLMPNGPMRIT-SGPFEPDLY 350
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 180 bits (457), Expect = 2e-52
Identities = 46/260 (17%), Positives = 80/260 (30%), Gaps = 30/260 (11%)
Query: 111 VEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYH 170
++ + + RE R+V I+PG+T EI + + +
Sbjct: 158 LDQASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGL 217
Query: 171 FFPKSCCTSVNEVICHGIP---DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEA 227
FP S+N H P D+ L+ DI ID + G D T
Sbjct: 218 AFP--TGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFN---PK 272
Query: 228 SRQLVQCTYECLEKAISIVKPGVRFREIGEVINRH---------ATMSGFSVVKSYCGHG 278
L++ + I VR ++GE I +++ GH
Sbjct: 273 YDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHS 332
Query: 279 IGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRS 337
IG+ H +P +A M+ G+ + IE + G D +
Sbjct: 333 IGQYRIHAGKTVPIVKGGEAT-RMEEGEVYAIETFGSTGKGVVHD--DMECSH------- 382
Query: 338 AQFEHTLLVTETGVEVLTAR 357
+ V + + +
Sbjct: 383 --YMKNFDVGHVPIRLPRTK 400
Score = 40.7 bits (95), Expect = 6e-04
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 330 VTADGKRSAQFEHTLLVTETGVEVLT 355
G +AQFEHT+L+ T EV++
Sbjct: 448 CDIKGSYTAQFEHTILLRPTCKEVVS 473
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 173 bits (439), Expect = 6e-51
Identities = 47/252 (18%), Positives = 76/252 (30%), Gaps = 32/252 (12%)
Query: 110 VVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNY 169
+ D ++ R R ++RPG+T EI R + ++T T
Sbjct: 38 IENFTESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGERNNGI 97
Query: 170 HFFPKSCCTSVNEVICHGIP----DSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNAD 225
FP S+N H L++ D++ ID + G D T
Sbjct: 98 G-FP--AGMSMNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAFKENL 154
Query: 226 EASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSV---------VKSYCG 276
E L+ E E I + VR +IG IN + + + G
Sbjct: 155 E---PLLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIGGRMWPIRPISDLHG 211
Query: 277 HGIGE-LFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGK 335
H I + H +IP N+ +K + +E G D
Sbjct: 212 HSISQFRIHGGISIPAV-NNRDTTRIKGDSFYAVETFATTG-----------KGSIDDRP 259
Query: 336 RSAQFEHTLLVT 347
+ F +
Sbjct: 260 PCSHFVLNTYKS 271
Score = 41.3 bits (97), Expect = 3e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 330 VTADGKRSAQFEHTLLVTETGVEVLT 355
DG + AQFEHT+ ++E G EVLT
Sbjct: 330 NDIDGCKVAQFEHTVYLSEHGKEVLT 355
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 141 bits (358), Expect = 9e-39
Identities = 57/288 (19%), Positives = 103/288 (35%), Gaps = 27/288 (9%)
Query: 82 LTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIR 141
+T+ ZL AL GT V+ + IK+ ++ + +RZ RI+ A A I
Sbjct: 127 VTLBHRRZLZK-ALPGTEFVDVGZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAIS 185
Query: 142 PGVTTDEIDRVVHEATITAGGY-PSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIV 200
GV E+ +A + + + +N H R +Z GDI+
Sbjct: 186 AGVPEYEVAIATTBAMVRZIARBFPYVELMDTWIWFQSGINTDGAHNPVTBRVVZRGDIL 245
Query: 201 NIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVIN 260
+++ G + L T F+ B+AS Z+ Z + + ++KPG R ++I +N
Sbjct: 246 SLNCFPMIFGYYTALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDIASELN 305
Query: 261 RHATMSGFSVVKSY----CGHGIGELFHCAPNIPHYS-RNKAVGVMKVGQTFTIEPMINA 315
Y GH G L H R V++ G ++EPM+
Sbjct: 306 BMYRZWDL---LRYRTFGYGHSFGVLBHYYGREAGVELREDIZTVLEPGMVVSMEPMV-- 360
Query: 316 GVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPK 363
P G R L++ E E +T P
Sbjct: 361 --MBPEGEPGAG------GYR---EHDILVIKENBTENIT----GFPF 393
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 138 bits (350), Expect = 1e-37
Identities = 56/268 (20%), Positives = 89/268 (33%), Gaps = 30/268 (11%)
Query: 106 DLQHVVE----IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAG 161
D+ IK+ ++ +R RIA A + V E+ +A + A
Sbjct: 146 DVAAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAI 205
Query: 162 GYPSPLNYHF-FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYF 220
+ +N H +RK+ GDI++++ G + L T F
Sbjct: 206 ADTFEDVELMDTWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLF 265
Query: 221 VGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKSY----CG 276
+ + + +L Q E E + ++KPG R +I +N Y G
Sbjct: 266 LDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVL---QYRTFGYG 322
Query: 277 HGIGELFHCAPNIPHYS-RNKAVGVMKVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGK 335
H G L H R V++ G ++EPMI P G
Sbjct: 323 HSFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMI----MLPEGLPGAG------GY 372
Query: 336 RSAQFEHTLLVTETGVEVLTARLPSSPK 363
R L+V E G E +T P
Sbjct: 373 R---EHDILIVNENGAENIT----KFPY 393
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 119 bits (301), Expect = 6e-31
Identities = 57/302 (18%), Positives = 109/302 (36%), Gaps = 64/302 (21%)
Query: 79 SSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAAR 138
++++ + + A + + +++ + +K +IE++++ I+ +
Sbjct: 100 EERVSLSLFRRISS-AFGDRKFIGIDDEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQ 158
Query: 139 MIRPGVTTDEIDRVVHEATITAGGY-PSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDG 197
IR G+T EI ++ G + F + + HG + +E G
Sbjct: 159 QIRAGMTEKEIAALLEYTMRKEGAEGVA------FDTIVASGCRSALPHGKASDKVVERG 212
Query: 198 DIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIG- 256
D++ ID Y+ D+ +G + +++ E E+A+ I K GV + +
Sbjct: 213 DVIVIDFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDS 272
Query: 257 ---EVINR--------HATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVGQ 305
E I H+ GHGIG H P I RN +
Sbjct: 273 VAREFIREKGYGEFFGHSL-----------GHGIGLEVHEGPAI--SFRND--SPLPENV 317
Query: 306 TFTIEPMI----NAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSS 361
FT+EP I G+ R+ E +++ E G E+LT +
Sbjct: 318 VFTVEPGIYLEGKFGI---RI------------------EEDVVLKEQGCEILT----TL 352
Query: 362 PK 363
P+
Sbjct: 353 PR 354
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 119 bits (300), Expect = 6e-31
Identities = 66/303 (21%), Positives = 118/303 (38%), Gaps = 64/303 (21%)
Query: 78 ISSKLTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAA 137
I S L EL + + + ++ + IK+ +I+ + + C IA + + AA
Sbjct: 93 IESSLPYGFIEELKK-KANIKEFKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAI 151
Query: 138 RMIRPGVTTDEIDRVVHEATITAGG-YPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLED 196
I G E+ V G P+ F + + HG+ +++E
Sbjct: 152 EEITEGKKEREVAAKVEYLMKMNGAEKPA------FDTIIASGYRSALPHGVASDKRIER 205
Query: 197 GDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIG 256
GD+V ID+ Y+ + D+ T VG+ +E +++ + E +KA+ KPG+ +E+
Sbjct: 206 GDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELD 265
Query: 257 ----EVINR--------HATMSGFSVVKSYCGHGIGELFHCAPNIPHYSRNKAVGVMKVG 304
+I H+ GHG+G H P + ++ V++ G
Sbjct: 266 SIARNIIAEYGYGEYFNHSL-----------GHGVGLEVHEWPRV--SQYDE--TVLREG 310
Query: 305 QTFTIEPMI----NAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPS 360
TIEP I GV R+ E T+L+T+ G + LT
Sbjct: 311 MVITIEPGIYIPKIGGV---RI------------------EDTILITKNGSKRLT----K 345
Query: 361 SPK 363
+ +
Sbjct: 346 TER 348
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 118 bits (298), Expect = 1e-30
Identities = 67/269 (24%), Positives = 104/269 (38%), Gaps = 63/269 (23%)
Query: 112 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY-PSPLNYH 170
IKT +I+ ++E +IA + IRPGV+ E+ + G S
Sbjct: 129 LIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS----- 183
Query: 171 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 230
F + + + HG+ + +E GD V +D YYKG D+ T VG + ++
Sbjct: 184 -FDIIVASGLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKE 242
Query: 231 LVQCTYECLEKAISIVKPGVRFREIG----EVINR--------HATMSGFSVVKSYCGHG 278
+ E + ++ +K G+ RE + I H+T GHG
Sbjct: 243 IYNIVLEAQLRGVNGIKAGLTGREADALTRDYITEKGYGEYFGHST-----------GHG 291
Query: 279 IGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMI----NAGVWRDRMWPDGWTAVTADG 334
IG H AP + R+ V++ G T+EP I GV R+
Sbjct: 292 IGLEIHEAPGL--AFRSD--TVLEPGMAVTVEPGIYIPGIGGV---RI------------ 332
Query: 335 KRSAQFEHTLLVTETGVEVLTARLPSSPK 363
E ++VT G EV+T SPK
Sbjct: 333 ------EDDIIVTSEGNEVIT----KSPK 351
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 118 bits (299), Expect = 2e-30
Identities = 55/269 (20%), Positives = 89/269 (33%), Gaps = 63/269 (23%)
Query: 112 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHF 171
+K +++ + + V + PG T ++ + EA + G
Sbjct: 149 MVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHSAV-----A 203
Query: 172 FPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYK-GVHGDLNETYFVGNADEASRQ 230
F + + H RKL+ GDIV +D+ Y+ G + D TY +G+ Q
Sbjct: 204 FV-IVGSGPHGADPHHGYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQ 262
Query: 231 LVQCTYECLEKAISIVKPGVRFREIG----EVINR--------HATMSGFSVVKSYCGHG 278
A+ V+PGV ++ +V+ H T GHG
Sbjct: 263 QYSALQRAQRAAVDAVRPGVTAAQVDAAARDVLADAGLAEYFVHRT-----------GHG 311
Query: 279 IGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMI----NAGVWRDRMWPDGWTAVTADG 334
IG H P I + + G F+IEP I G R+
Sbjct: 312 IGLCVHEEPYIVAGNE----LPLVAGMAFSIEPGIYFPGRWGA---RI------------ 352
Query: 335 KRSAQFEHTLLVTETGVEVLTARLPSSPK 363
E ++VTE G + + P
Sbjct: 353 ------EDIVVVTENGALSVN----NRPH 371
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 116 bits (294), Expect = 5e-30
Identities = 61/269 (22%), Positives = 99/269 (36%), Gaps = 64/269 (23%)
Query: 112 EIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY-PSPLNYH 170
IK ++++ M RIA +V + G+ E+ + E I +
Sbjct: 130 MIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKI-ELLIRELSDGIA----- 183
Query: 171 FFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQ 230
F + N H P RK+ GDI+ +D +KG D+ T +G DE +
Sbjct: 184 -FEPIVASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDERLVK 242
Query: 231 LVQCTYECLEKAISIVKPGVRFREIG----EVINR--------HATMSGFSVVKSYCGHG 278
+ + + E A V+ G++ +++ EVI++ H T GHG
Sbjct: 243 IYEVVKDAQESAFKAVREGIKAKDVDSRAREVISKAGYGEYFIHRT-----------GHG 291
Query: 279 IGELFHCAPNIPHYSRNKAVGVMKVGQTFTIEPMI----NAGVWRDRMWPDGWTAVTADG 334
+G H P I + ++K G TFTIEP I GV R+
Sbjct: 292 LGLDVHEEPYIG--PDGE--VILKNGMTFTIEPGIYVPGLGGV---RI------------ 332
Query: 335 KRSAQFEHTLLVTETGVEVLTARLPSSPK 363
E ++V E LT + +
Sbjct: 333 ------EDDIVVDEGKGRRLT----KAER 351
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 117 bits (294), Expect = 2e-29
Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 45/274 (16%)
Query: 106 DLQHVVE----IKTPDQIERMRETCRIAREVLDAAARMIRPGV-----TTDEIDRVVHEA 156
D + V E +K PD+I MR + R V ++I ++H
Sbjct: 218 DGEEVTEKARSVKGPDEIRAMRCASHACEVAVRKMEDFARSKVGDGVTCENDIWAILHSE 277
Query: 157 TITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDV-TVYYKGVHGDL 215
+ G + + R + +I++ D V G+ D+
Sbjct: 278 NVRRG------GEWIETRLLASGPRSNPWFQECGPRVCQRNEIISFDTDLVGAYGICTDI 331
Query: 216 NETYFVGNADEASRQ--LVQCTYECLEKAISIVKPGVRFREIGEVINRHATMSGFSVVKS 273
+ ++++G+ + +Q E + + ++KPGV E+ N H + F K
Sbjct: 332 SRSWWIGDQKPRADMIYAMQHGVEHIRTNMEMLKPGVMIPELSA--NTHVLDAKFQKQKY 389
Query: 274 YC-GHGIGELFHCAPNIPHYSRNKAVG---VMKVGQTFTIEPMINAGVWRDRMWPDGWTA 329
C HG+G L P + + A ++ G T +E + G +
Sbjct: 390 GCLMHGVG-LCDEWPLVAYPDHAVAGAYDYPLEPGMTLCVEA----LISE----EGGDFS 440
Query: 330 VTADGKRSAQFEHTLLVTETGVEVLTARLPSSPK 363
+ + E +L+TE G E LT P
Sbjct: 441 I-----KL---EDQVLITEDGYENLT----KYPF 462
Score = 42.7 bits (100), Expect = 1e-04
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 3/60 (5%)
Query: 104 NSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGY 163
+D+ I M + E + M++PGV E+ H + +
Sbjct: 328 CTDISRSWWIGDQKPRADMIYAMQHGVEHIRTNMEMLKPGVMIPELSANTH---VLDAKF 384
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 101 bits (253), Expect = 6e-24
Identities = 41/301 (13%), Positives = 86/301 (28%), Gaps = 37/301 (12%)
Query: 84 VPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERMRETCRIAREVL-----DAAAR 138
+ + + + V+ + L + IK ++ ++ R++ V+ D +
Sbjct: 148 INEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELST 207
Query: 139 MIRPG--VTTDEI----------DRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH 186
I G +T + + ++ G + + + +
Sbjct: 208 YIDQGKKITHSKFSDQMESLIDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKP 267
Query: 187 GIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAISIV 246
+ GD+V + YK ++ TY E ++ +K
Sbjct: 268 SAITDDRNLHGDVVLCSLGFRYKSYCSNVGRTYLFDPDSEQ-QKNYSFLVALQKKLFEYC 326
Query: 247 KPGVRFREIGEVINRHATMSGFSVVKSY---CGHGIGELFHCAPNIPHYSRNKAVGVMKV 303
+ G +I I + ++ G GIG F K V++
Sbjct: 327 RDGAVIGDIYTKILGLIRAKRPDLEPNFVRNLGAGIGIEFR---ESSLLVNAKNPRVLQA 383
Query: 304 GQTFTIEP-MINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSP 362
G T + N + A+ T+ +T + V T SP
Sbjct: 384 GMTLNLSIGFGNLINPHPKNSQSKEYAL--------LLIDTIQITRSDPIVFT----DSP 431
Query: 363 K 363
K
Sbjct: 432 K 432
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 100 bits (251), Expect = 1e-23
Identities = 35/296 (11%), Positives = 89/296 (30%), Gaps = 48/296 (16%)
Query: 100 KVEPNSDLQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVH----- 154
++ + L V E+K ++ + + + + + +D + + V DE ++ +
Sbjct: 164 VIDISLGLSKVWEVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAV--DEELKITNAKLSD 221
Query: 155 --EATITAGGYPSPLNYH-------------------FFPKSCCTSVNEVICHGIPDSRK 193
E I + L+ + P ++ + +
Sbjct: 222 KIENKIDDVKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQ 281
Query: 194 LEDGDIVNIDVTVYYKGVHGDLNETYFVGNADEASRQLVQCTYECLEKAI-SIVKPGVRF 252
L + + Y ++ T+ + + E ++ + +I+KPG
Sbjct: 282 LYGNGCILASCGIRYNNYCSNITRTFLI-DPSEEMANNYDFLLTLQKEIVTNILKPGRTP 340
Query: 253 REIGEVINRHATMSGFSVVKSY---CGHGIGELFHCAPNIPHYSRNKAVGVMKVGQTFTI 309
+E+ E + + + +V ++ G IG F + I + + ++ G F I
Sbjct: 341 KEVYESVIEYIEKTKPELVPNFTKNIGSLIGLEFRDSNFILNVKNDYR--KIQRGDCFNI 398
Query: 310 EPMINAGVWRDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVE--VLTARLPSSPK 363
N + + Q T+ + E +
Sbjct: 399 SFGFN-----NLKDSQSA------NNYALQLADTVQIPLDETEPPRFLTNYTKAKS 443
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 78.0 bits (193), Expect = 4e-16
Identities = 65/305 (21%), Positives = 112/305 (36%), Gaps = 53/305 (17%)
Query: 89 ELPDWALDGTPKVEPNSDLQHVVE----IKTPDQIERMRETCRIAREVLDAAARMIRPGV 144
+L + D + VV K+P++I +R I A RPG+
Sbjct: 147 KLRKGSRQNLTAPATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGM 206
Query: 145 TTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDV 204
++ +H G Y + + N I H + ++ DGD+V ID
Sbjct: 207 FEYHLEGEIHHEFNRHGA-----RYPSYNTIVGSGENGCILHYTENECEMRDGDLVLIDA 261
Query: 205 TVYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHA 263
YKG GD+ T+ V G +A R++ E LE ++ + +PG E+ + R
Sbjct: 262 GCEYKGYAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIM 321
Query: 264 T---------------MSGFSVVKSYCGHGIGELFH--------CAPNIPHYSRNKAVGV 300
+ + + + HG+ H SR +
Sbjct: 322 VSGLVKLGILKGDVDELIAQNAHRPFFMHGLS---HWLGLDVHDVGVYGQDRSR-----I 373
Query: 301 MKVGQTFTIEPMINAGVW--RDRMWPDGWTAVTADGKRSAQFEHTLLVTETGVEVLTARL 358
++ G T+ P G++ D P+ + + G R E +++TETG E LTA +
Sbjct: 374 LEPGMVLTVAP----GLYIAPDAEVPEQYRGI---GIR---IEDDIVITETGNENLTASV 423
Query: 359 PSSPK 363
P+
Sbjct: 424 VKKPE 428
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 77.9 bits (192), Expect = 7e-16
Identities = 49/306 (16%), Positives = 88/306 (28%), Gaps = 50/306 (16%)
Query: 97 GTPKVEPNSDLQHVVE---IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVV 153
G + P + KT ++ MRE +IA + AA G + EI +
Sbjct: 140 GFELMNPEPVMNFYHYHRAYKTQYELACMREANKIAVQGHKAARDAFFQGKSEFEIQQAY 199
Query: 154 HEATITAGGYPSPLNYHFFPKSCCTSVNEVICHGI-PDSRKLEDGDIVNIDVTVYYKGVH 212
AT + + + N I H D ID + G
Sbjct: 200 LLATQHSENDNP------YGNIVALNENCAILHYTHFDRVAPATHRSFLIDAGANFNGYA 253
Query: 213 GDLNETYFVGNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT-------- 264
D+ TY E +LV + ++ + PG + E+ ++
Sbjct: 254 ADITRTYDFTGEGE-FAELVATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNI 312
Query: 265 MSG-------FSVVKSYCGHGIG----------------ELFHCAPNIPHYSRNKAVGVM 301
+ + ++ HG+G E + + +
Sbjct: 313 VDLSADEIVAKGITSTFFPHGLGHHIGLQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKI 372
Query: 302 KVGQTFTIEPMINAGVWRDRMWPDGWTAVTADGKRSAQF--------EHTLLVTETGVEV 353
+ Q FTIEP + + + A+ E ++V E +E
Sbjct: 373 EANQVFTIEPGLYFIDSLLGDLAATDNNQHINWDKVAELKPFGGIRIEDNIIVHEDSLEN 432
Query: 354 LTARLP 359
+T L
Sbjct: 433 MTRELR 438
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 77.3 bits (191), Expect = 8e-16
Identities = 45/275 (16%), Positives = 101/275 (36%), Gaps = 63/275 (22%)
Query: 113 IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGGYPSPLNYHFF 172
KT ++IE ++E + ++ + + + + E++ ++G +H F
Sbjct: 171 FKTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQFDFTLKSSGI-----KHHAF 225
Query: 173 PKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVYYKGVHGDLNETYFV-GNADEASRQL 231
+ N + H + ++++GD+V +D+ + D++ T+ G +Q+
Sbjct: 226 NTILASGKNATVLHYEDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQI 285
Query: 232 VQCTYECLEKAISIVKPGVRFREIGEVINRHAT--------MSGFSVVKSYCGHGIGELF 283
L++ I+KPG++F + E + + + Y HG+
Sbjct: 286 YNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQEDEELSKYYYHGVS--- 342
Query: 284 HCAPNIPHY----------SRNKAVGVMKVGQTFTIEPMI-----NAGVWRDRMWPDGWT 328
H+ ++ V++ G TIEP + + G+ R+
Sbjct: 343 -------HFLGLDTHDVGTYKD---RVLEEGMVITIEPGLYIEEESIGI---RI------ 383
Query: 329 AVTADGKRSAQFEHTLLVTETGVEVLTARLPSSPK 363
E +LVT+ G E L+ + +
Sbjct: 384 ------------EDDILVTKDGHENLSKDIIREVE 406
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 72.9 bits (179), Expect = 2e-14
Identities = 57/318 (17%), Positives = 119/318 (37%), Gaps = 56/318 (17%)
Query: 95 LDGTPKVEPNS-DLQHVVE----IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEI 149
DG K E N+ L + KT ++E +R T +I+ E + ++ G+ E+
Sbjct: 164 FDGISKFEVNNTILHPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYEL 223
Query: 150 DRVVHEATITAGGYPSPLNYHFFPKSCCTSVNEVICH----GIPDSRKLEDGDIVNIDVT 205
+ + + GG + + + C + N + H G P+ R +++GD+ D+
Sbjct: 224 ESLFEHYCYSRGG----MRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMG 279
Query: 206 VYYKGVHGDLNETYFV-GNADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT 264
Y D+ ++ G + + + + +KPGV + ++ + +R
Sbjct: 280 GEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHL 339
Query: 265 --------MSG-------FSVVKSYCGHGIG-------------ELFHCAPNIPHYSRNK 296
+SG + + HG+G + P +
Sbjct: 340 EELAHMGILSGSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLR 399
Query: 297 AVGVMKVGQTFTIEP---MINAGVWRDRMWPDGWTAVTADGKRSAQF--------EHTLL 345
++ G T+EP I+ + D D A + + +F E ++
Sbjct: 400 TARHLQPGMVLTVEPGIYFIDHLL--DEALADPARASFFNREVLQRFRGFGGVRIEEDVV 457
Query: 346 VTETGVEVLTARLPSSPK 363
VT++G+E+LT +P + +
Sbjct: 458 VTDSGIELLTC-VPRTVE 474
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 72.8 bits (179), Expect = 3e-14
Identities = 52/315 (16%), Positives = 100/315 (31%), Gaps = 59/315 (18%)
Query: 97 GTPKVEPNSDLQHVVE---IKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVV 153
G V P+ L ++ KT +++ MRE ++A AA + R G + +I+
Sbjct: 140 GFDNVNPDRVLHYLHYQRAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAY 199
Query: 154 HEATITAGGYPSPLNYHFFPKSCCTSVNEVICH-GIPDSRKLEDGDIVNIDVTVYYKGVH 212
A+ + + + I H D+ ++ ID Y G
Sbjct: 200 AAASRQGDNDVP------YTSIVALNEHASILHYMQCDTVAPKESRSFLIDAGANYHGYA 253
Query: 213 GDLNETYFVGN--ADEASRQLVQCTYECLEKAISIVKPGVRFREIGEVINRHAT------ 264
D+ TY R L+Q + + +KPGV + +I + +
Sbjct: 254 ADITRTYAQEGVHNSAMFRDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDT 313
Query: 265 --MSG-------FSVVKSYCGHGIG----------------ELFHCAPNIPHYSRNKAVG 299
++ + +++ HGIG + P + +
Sbjct: 314 GMVNLTPPEIVEMGITRTFFPHGIGHFLGLQVHDVGGLVNDDRGTPKPAPDDHPFLRCTR 373
Query: 300 VMKVGQTFTIEPMINAGV----WRDRMWPDGWTAVTADGKRSAQF--------EHTLLVT 347
+++ Q FTIEP G+ R + + + E ++V
Sbjct: 374 MVEARQVFTIEP----GLYFIDSLLRDLKATPASKYINWDTIDAYKPFGGIRIEDNIIVH 429
Query: 348 ETGVEVLTARLPSSP 362
E +T L +
Sbjct: 430 RDKNENMTRDLDLNL 444
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 8e-08
Identities = 41/203 (20%), Positives = 62/203 (30%), Gaps = 71/203 (34%)
Query: 118 QIERM----RETCRIAREVLDAAARMIRP--GVTTDEIDRVVHEATITAGGYPSPLNYHF 171
Q + M +T + A++V + A + G + +I P L HF
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVI----------NNPVNLTIHF 1676
Query: 172 F-PKSCCTSVN--EVICHGIPDSRKLEDG--DIVNIDVTVY-YKGVHGDLNETYFVGNAD 225
K N +I I D + + +N T Y ++ G L+ T F
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT---- 1732
Query: 226 EASRQ--LVQCTYECLEKAISIVKPGVRFREIGE--VINRHATMSGFSVVKSYCGHGIGE 281
Q L +EKA F ++ +I AT GH +GE
Sbjct: 1733 ----QPALT-----LMEKAA--------FEDLKSKGLIPADATF---------AGHSLGE 1766
Query: 282 ---LFHCAPNIPHYSRNKAVGVM 301
L A VM
Sbjct: 1767 YAALASLA------------DVM 1777
Score = 28.1 bits (62), Expect = 6.3
Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 32/106 (30%)
Query: 131 EVLDAAARM--IRPG-----VTTDEIDRVVHEATITAGGYPSPLNYHFFPKSCCTSVNE- 182
E+ + M I PG + + + VV G +NY N
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-----------NVE 1849
Query: 183 ---VICHG----------IPDSRKLEDGDIVNIDVTVYYKGVHGDL 215
+ G + + KL+ DI+ + ++ + V G L
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 35.2 bits (82), Expect = 0.035
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 20/72 (27%)
Query: 115 TPDQIERMRETCRIAREVLDAAA------RMIRPG--VTTDEIDRVVHEATITAGGYPSP 166
T ER R +R + R + PG + E+D + + IT
Sbjct: 407 TGRDRERFRRALEASRTIGHRDELAGWRERELLPGTPNSAAEMDDFIARSVITH------ 460
Query: 167 LNYHFFPKSCCT 178
+H P C T
Sbjct: 461 --HH--P--CGT 466
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 33.7 bits (78), Expect = 0.099
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 30/91 (32%)
Query: 99 PKVEPN--SDLQHVVEIKTPDQIERMRETCRIAREVLDAAA------RMIRPG--VTTD- 147
P V+P +D + D + M R ARE+ A R + PG TD
Sbjct: 399 PMVDPRYFTDPE------GHD-MRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDE 451
Query: 148 EIDRVVHEATITAGGYPSPLNYHFFPKSCCT 178
E+ + + T YH P T
Sbjct: 452 ELQDYIRKTHNTV--------YH--P--VGT 470
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.10
Identities = 37/225 (16%), Positives = 66/225 (29%), Gaps = 72/225 (32%)
Query: 69 WTG-TLRPYPISSK-LTVPAYIELPDWALDGTPKVEPNSDLQHVVEIKTPDQIERM---- 122
+ +S K L + ++ D L L H TPD+++ +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTD-FLSAATTTHI--SLDHHSMTLTPDEVKSLLLKY 310
Query: 123 ---------RETCRIAREVLDAAARMIRPGVTT---------DEIDRVVHEATITAGGYP 164
RE L A IR G+ T D++ ++ E+++ P
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLNV-LEP 368
Query: 165 SPLNYHF-----FPKSCCTSVNEVICHGIP---------DSRKLEDGDIVNIDV------ 204
+ F FP S + IP D K + +VN
Sbjct: 369 AEYRKMFDRLSVFPP----SAH------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 205 ------TVYYKGVHGDLNETYFVGNADEAS--RQLVQCTYECLEK 241
T+ ++ +L +E + R +V Y +
Sbjct: 419 KQPKESTISIPSIYLELKVK----LENEYALHRSIVDH-YNIPKT 458
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 32.2 bits (74), Expect = 0.31
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 22/74 (29%)
Query: 115 TPDQIERMRETCRIAREVLDAA-------ARMIRPG--VTTDE-IDRVVHEATITAGGYP 164
I MRE R + ++L + +D+ + R V + TA
Sbjct: 453 NDLDIIAMREGIRFSYDLLFKGEGFKDLVESEYPWEMPLDSDKEMHRAVLDRCQTA---- 508
Query: 165 SPLNYHFFPKSCCT 178
+H P T
Sbjct: 509 ----FH--P--TGT 514
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 31.8 bits (73), Expect = 0.35
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 18/66 (27%)
Query: 115 TPDQIERMRETCRIAREVLDAAA------RMIRPG---VTTDE-IDRVVHEATITAGGYP 164
T I M + + L A R P T D I+ + + T
Sbjct: 445 TEFDIFTMIQAVKSNLRFLSGQAWADFVIRPFDPRLRDPTDDAAIESYIRDNANTI---- 500
Query: 165 SPLNYH 170
+H
Sbjct: 501 ----FH 502
>2vi7_A Acetyltransferase PA1377; GNAT, GCN5 family, N-acetyltransferase,
hypothetical protein; 2.25A {Pseudomonas aeruginosa}
Length = 177
Score = 30.4 bits (69), Expect = 0.63
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 22/92 (23%)
Query: 250 VRFREIGEVINRHATMSGFSVVKSYCGHGIG-----ELFHCAPNIPH--------YSRN- 295
+ + H+ G V ++ G G+G EL A N + Y+ N
Sbjct: 73 ASLEQHPRIRRSHSGSIGMGVAVAWQGKGVGSRLLGELLDIADNWMNLRRVELTVYTDNA 132
Query: 296 KAVGVM-KVGQTFTIEPMINAGVWRDRMWPDG 326
A+ + K G F E G RD DG
Sbjct: 133 PALALYRKFG--FETE-----GEMRDYAVRDG 157
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural
genomics, transferase; 2.35A {Neisseria gonorrhoeae}
SCOP: c.68.1.13 PDB: 1vgz_A
Length = 231
Score = 29.8 bits (68), Expect = 0.99
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 132 VL--DAAARMIRPGVTTDEIDRVVHEATITAGG 162
+L DAA R + ++ + R++ +A A G
Sbjct: 107 ILVHDAA----RCCLPSEALARLIEQAGNAAEG 135
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase;
cytidylyltransferase, deoxyxylulose-5-phosphate pathway
(DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A
{Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A
1vgt_A 1vgu_A 3n9w_A 1h3m_A
Length = 236
Score = 29.8 bits (68), Expect = 1.1
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 132 VL--DAAARMIRPGVTTDEIDRVVHEATITAGG 162
VL DAA RP + D++ R++ + + G
Sbjct: 102 VLVHDAA----RPCLHQDDLARLLALSETSRTG 130
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB:
1zkh_A
Length = 115
Score = 28.2 bits (63), Expect = 1.9
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 64 LPHFDWTGTLRPYPISSKLTVPAYIELPDWALDG---TPKVEPNSDLQHV 110
+P ++ P+S K+ VP + +W L+G + + +
Sbjct: 13 MPEEEFLRRN-KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVI 61
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP
pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB:
2xwm_A*
Length = 223
Score = 29.0 bits (66), Expect = 2.1
Identities = 10/33 (30%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 132 VL--DAAARMIRPGVTTDEIDRVVHEATITAGG 162
VL DAA R I RVV
Sbjct: 96 VLVHDAA----RALTPPALIARVVAALKEGHSA 124
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural
genomics consortium, TBSGC, rossman fold; HET: CDM;
2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A
2xwn_A*
Length = 231
Score = 28.6 bits (65), Expect = 2.3
Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 6/33 (18%)
Query: 132 VL--DAAARMIRPGVTTDEIDRVVHEATITAGG 162
VL DAA R + RVV
Sbjct: 103 VLVHDAA----RALTPPALVARVVEALRDGYAA 131
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 28.7 bits (65), Expect = 2.5
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 314 NAGVWRDRMWPDGWTAV 330
NAG+ DGW V
Sbjct: 109 NAGIAPMSAGDDGWHDV 125
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 28.7 bits (65), Expect = 3.5
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 115 TPDQIERMRETCRIAREVLDAAA------RMIRPG--VTTDE 148
+ ++AR + ++ A PG + D
Sbjct: 457 NELDLLGQAAATQLARNISNSGAMQTYFAGETIPGDNLAYDA 498
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA
motif, APKC, cell polarity, transferase/cell cycle
complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Length = 86
Score = 26.6 bits (59), Expect = 3.6
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 198 DIVNIDVTVYYKGVHGDL 215
I +DV + Y HGDL
Sbjct: 42 QIPGLDVLLGYTDAHGDL 59
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 28.4 bits (63), Expect = 4.5
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 140 IRPGVTTDEIDRVVHEATITAGGY 163
R E++R + A G
Sbjct: 404 HRETSMVHELNRYIPTAAAFGGLC 427
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 28.3 bits (64), Expect = 4.5
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 114 KTPDQIERMRETCRIAREVLDAAARMIRPG 143
+T D I+ + +L+ +++PG
Sbjct: 213 RTMDDIKFC---QGLQMRLLEKGLEVLKPG 239
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic;
transferase, non-mevalonate-pathway, herbicide,
allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana}
PDB: 2yc5_A* 1w77_A* 2ycm_A*
Length = 228
Score = 27.9 bits (63), Expect = 4.6
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 132 VL--DAAARMIRPGVTTDEIDRVVHEATITAGGYP 164
V D+A RP V T+++++V+ + +
Sbjct: 101 VCIHDSA----RPLVNTEDVEKVLKDGSAVGAAVL 131
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal
binding protein; NMR {Homo sapiens}
Length = 60
Score = 25.7 bits (56), Expect = 4.8
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 10 AAFCTQDCFKASWTSHKSV 28
A +C C W H +
Sbjct: 33 ARYCGSFCQHKDWEKHHHI 51
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional
regulato PSI-2, regulatory protein, structural genomics,
protein STR initiative; 1.90A {Rhodococcus SP} SCOP:
a.4.1.9 a.121.1.1
Length = 209
Score = 27.7 bits (62), Expect = 5.3
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 130 REVLDAAARMIR----PGVTTDEIDRVVHEATITAGGYPSPLNYHF 171
R + DA +I VTT + E+ + G LN++F
Sbjct: 12 RALADAVLALIAREGISAVTTRAVAE---ESGWSTGV----LNHYF 50
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: 1PE; 1.60A {Methanosarcina
maze}
Length = 429
Score = 28.1 bits (63), Expect = 5.3
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 334 GKRSAQFEHTLLVTETGVEV 353
K++AQ H +++ E G +
Sbjct: 174 SKKAAQTVHNIIIVEEGATL 193
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding,
nucleotide-binding, transferase; HET: AP5; 2.00A
{Marinibacillus marinus}
Length = 216
Score = 27.5 bits (62), Expect = 5.8
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 94 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 127
ALD + L +V+ IK + ++R+ R C+
Sbjct: 95 ALDSLLT-DLGKKLDYVLNIKVEQEELMKRLTGRWICK 131
>3owc_A Probable acetyltransferase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: COA; 1.90A {Pseudomonas aeruginosa}
Length = 188
Score = 27.4 bits (61), Expect = 5.9
Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 28/93 (30%)
Query: 255 IGEV------INRHATMSGFSVVKSYCGHGIG-----ELFHCAPNIPH--------YSRN 295
IG N ++ + S G G+G L A Y N
Sbjct: 80 IGHCQLLFDRRNGVVRLARIVLAPSARGQGLGLPMLEALLAEAFADADIERVELNVYDWN 139
Query: 296 -KAVGVM-KVGQTFTIEPMINAGVWRDRMWPDG 326
A + + G F E G+ R
Sbjct: 140 AAARHLYRRAG--FREE-----GLRRSATRVGR 165
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.1
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 29/55 (52%)
Query: 54 IKKGQARTPKLPHFDWTGTLRPYPISSKLTVPAYIELPDWALDGTPKVEPNSDLQ 108
+KK QA L+ Y D A P + + ++
Sbjct: 22 LKKLQAS------------LKLYA-------------DDSA----PALAIKATME 47
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 27.7 bits (62), Expect = 6.3
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 114 KTPDQIERMRETCRIAREVLDAAARMIRPG 143
P +RM + + +L A+R++ PG
Sbjct: 196 WGPSAPKRM---AEVQKALLAQASRLLGPG 222
>2i79_A Acetyltransferase, GNAT family; acetyl coenzyme *A, structur
genomics, PSI-2, protein structure initiative; HET: ACO;
2.10A {Streptococcus pneumoniae}
Length = 172
Score = 27.0 bits (60), Expect = 6.8
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 260 NRHATMSGFSVVKSYCGHGIG 280
RH + K Y +G+G
Sbjct: 84 VRHIGDLFIVIGKRYWNNGLG 104
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A
{Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A*
1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Length = 214
Score = 27.1 bits (61), Expect = 7.0
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 16/56 (28%)
Query: 88 IELPDWA----LDGTPK--------VEPNSDLQHVVEIKTPDQ--IERM--RETCR 127
I D LDG P+ E ++ +V+E PD+ ++R+ R
Sbjct: 72 IAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHA 127
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 25.3 bits (55), Expect = 7.0
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 10 AAFCTQDCFKASWTSHKSV 28
A +C C W H +
Sbjct: 37 ARYCGSFCQHKDWEKHHHI 55
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide
biosynthesis, nucleotide-BIND transferase, structural
genomics; 2.10A {Burkholderia pseudomallei 1710B}
Length = 230
Score = 27.2 bits (61), Expect = 7.0
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 16/60 (26%)
Query: 84 VPAYIELPDWA----LDGTPK--------VEPNSDLQHVVEIKTPDQ--IERM--RETCR 127
V ++ D A DG P+ E + +V+EI P IERM R T
Sbjct: 76 VKERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHP 135
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A
{Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB:
2r42_A* 2r3v_A
Length = 395
Score = 27.5 bits (60), Expect = 7.1
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 107 LQHVVEIKTPDQIERMRETCRIAREVLDAAARMIRPGVTTDEIDRVVHEATITAGG 162
L + P+Q + E + + L+A GV +D++
Sbjct: 279 LGEMAAAPVPEQYLVLEELMDMNQHHLNA------LGVGHASLDQLCQVTAAHGLH 328
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination,
ATP-binding, cytoplasm, metal-binding, nucleotide
biosynthesis, nucleotide-binding; HET: AP5; 1.58A
{Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A*
2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A*
1s3g_A*
Length = 216
Score = 27.1 bits (61), Expect = 7.2
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 94 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 127
AL+ + E + +V+ I+ +ER+ R C
Sbjct: 95 ALEEILE-EMGKPIDYVINIQVDKDVLMERLTGRRICS 131
>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding,
nucleo binding, transferase; HET: AP5; 1.90A {Aquifex
aeolicus} PDB: 2rh5_A
Length = 206
Score = 27.2 bits (61), Expect = 7.5
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 94 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 127
ALD + + + HV+ + PD+ IER+ R
Sbjct: 92 ALDEMLE-KKGLKVDHVLLFEVPDEVVIERLSGRRINP 128
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein,
endotoxin, lipid binding protein; NMR {Penaeus monodon}
Length = 102
Score = 26.3 bits (57), Expect = 7.6
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 306 TFTIEPMINA--GVWRDRMWPDGWTAVTADGK---RSAQFEHTLLVTETGVEVLTARLPS 360
FT++P + ++ RMW GWTA+ + +S T + + L S
Sbjct: 35 KFTVKPYLKRFQVYYKGRMWCPGWTAIRGEASTRSQSGVAGKT--AKDFVRKAFQKGLIS 92
Query: 361 SPKVYPWLNA 370
+ WL++
Sbjct: 93 QQEANQWLSS 102
>2ibd_A Possible transcriptional regulator; probable transcriptional
regulatory protein, rhodococcus SP. structural genomics,
PSI-2; 1.50A {Rhodococcus SP}
Length = 204
Score = 27.3 bits (61), Expect = 7.6
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 16/50 (32%)
Query: 130 REVLDAAARMIR----PGVTTDEI-DRV-VHEATITAGGYPSPLNYHFFP 173
E+LD AA + T +I D + ++ YH F
Sbjct: 17 TELLDIAATLFAERGLRATTVRDIADAAGILSGSL----------YHHFD 56
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding
3-helical bundle FO turn helix motif, HTH motif; HET:
UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9
a.121.1.1
Length = 199
Score = 27.0 bits (60), Expect = 7.9
Identities = 5/42 (11%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 116 PDQIERMRETCR-IAREVLDAAAR--MIRPGVTTDEIDRVVH 154
PD++ +R T +++ A + ++ + +
Sbjct: 114 PDEVSALRRTTEKNTTTLINLAKQHGLVHHDIAPGTYIVGLI 155
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 27.6 bits (62), Expect = 8.2
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 6/35 (17%)
Query: 112 EIK---TPDQIERMRETCRIAREVLDAAARMIRPG 143
E++ D+I M + + RE+L++AAR+++PG
Sbjct: 351 ELRWRLREDKINEMSQ---LQRELLESAARLVKPG 382
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain,
anti parallel coiled coil, SMC proteins; 2.0A
{Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Length = 186
Score = 26.8 bits (60), Expect = 8.3
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 239 LEKAISIVK-PGVRFREI---GEVINRHATMSG 267
L+ AI + K + R GE+I+ ++G
Sbjct: 139 LDDAIRMKKKYRLNTRIATLDGELISGRGAITG 171
>2wd5_B Structural maintenance of chromosomes protein 3; DNA damage, cell
cycle, cell division; 2.70A {Mus musculus}
Length = 213
Score = 26.9 bits (60), Expect = 8.4
Identities = 4/32 (12%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 239 LEKAISIVKPGVRFREI---GEVINRHATMSG 267
+E + + + I G+ ++ ++G
Sbjct: 153 MEVSTQLAR-AFTMDCITLEGDQVSHRGALTG 183
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 27.4 bits (61), Expect = 8.7
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 114 KTPDQIERMRETCRIAREVLDAAARMIRPG 143
+P+ + + RE++D+A +RPG
Sbjct: 213 WSPESNQEI---AATQRELIDSAFHALRPG 239
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics
consortium, SGC, RO fold, transferase, ATP binding,
phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium
falciparum}
Length = 243
Score = 27.2 bits (61), Expect = 8.7
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 94 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 127
L+ + + + L V PD+ + R+ R +
Sbjct: 124 DLNKLLQ-KNQTKLDGVFYFNVPDEVLVNRISGRLIHK 160
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport,
vesicular trafficking, GTPase, LOWE syndr immunoglobulin
fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Length = 140
Score = 26.7 bits (59), Expect = 8.8
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 13/99 (13%)
Query: 120 ERMRETCR-IAREVLDAAARMIRPGVT--TDEID--------RVVHEATITAGGYPSPLN 168
R R+ R +D P + E + I+ G P +
Sbjct: 3 RRYRKVFEDSVRI-MDRMENDFLPSLELSRREFVFENVKFRQLQKEKFQISNNG-QVPCH 60
Query: 169 YHFFPKSCCTSVNEVICHGIPDSRKLEDGDIVNIDVTVY 207
+ F PK + + P LE + V+I + VY
Sbjct: 61 FSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISLDVY 99
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase,
transferase (phosphotransferase); HET: AP5; 1.63A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB:
2aky_A* 3aky_A* 1dvr_A*
Length = 220
Score = 27.1 bits (61), Expect = 8.9
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 94 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 127
LD K E + L+ +E+K D+ + R+ R
Sbjct: 100 KLDQMLK-EQGTPLEKAIELKVDDELLVARITGRLIHP 136
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 27.3 bits (61), Expect = 8.9
Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 114 KTPDQIERMRETCRIAREVLDAAARMIRPG 143
T + + +E+L +A +M++
Sbjct: 201 WTEESPLYC---QKRQQEILSSAIKMLKNK 227
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure
initiative, midwest center for struc genomics, MCSG;
HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP:
d.108.1.1
Length = 170
Score = 26.5 bits (59), Expect = 9.2
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 250 VRFREIGEVINRHATMSGFSVVKSYCGHGIG-ELFHCA 286
R H G ++ +Y G+G L
Sbjct: 73 CDIRRQDRATRAHCGTLGMGILPAYRNKGLGARLMRRT 110
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein
inhibitors, nucleotide-binding, transferase; HET: AP5;
1.60A {Cryptosporidium parvum iowa II}
Length = 217
Score = 26.7 bits (60), Expect = 9.5
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 94 ALDGTPKVEPNSDLQHVVEIKTPDQ--IERM--RETCR 127
L E L V+ + D IER+ R T
Sbjct: 100 GLAKILS-EIGDSLTSVIYFEIDDSEIIERISGRCTHP 136
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 27.3 bits (61), Expect = 9.6
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 182 EVICHGIPDSRKLEDGDIVNIDVTV 206
E + SR L++G+I +
Sbjct: 33 EALAFSSVKSRGLDEGEIKDAIAFK 57
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET:
AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Length = 222
Score = 26.8 bits (60), Expect = 10.0
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 12/47 (25%)
Query: 93 WALDGTPK--------VEPNSDLQHVVEIKTPDQ--IERM--RETCR 127
W LDG P+ + + PD+ +ER+ R
Sbjct: 87 WLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDP 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.427
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,957,097
Number of extensions: 363705
Number of successful extensions: 1226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1107
Number of HSP's successfully gapped: 105
Length of query: 370
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 275
Effective length of database: 4,049,298
Effective search space: 1113556950
Effective search space used: 1113556950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)