Query 017490
Match_columns 370
No_of_seqs 280 out of 2079
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 09:01:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02928 oxidoreductase family 100.0 3.1E-73 6.6E-78 558.0 33.9 338 28-370 10-347 (347)
2 COG0111 SerA Phosphoglycerate 100.0 1.2E-72 2.7E-77 547.1 29.2 306 36-365 3-313 (324)
3 PRK15409 bifunctional glyoxyla 100.0 3E-71 6.5E-76 538.8 29.3 304 37-366 3-317 (323)
4 PRK06487 glycerate dehydrogena 100.0 6.7E-70 1.5E-74 528.7 33.0 301 37-364 1-314 (317)
5 PRK08410 2-hydroxyacid dehydro 100.0 8.5E-70 1.8E-74 526.7 31.8 299 37-362 1-311 (311)
6 PRK06932 glycerate dehydrogena 100.0 2.8E-69 6.2E-74 523.5 30.5 269 69-362 34-314 (314)
7 COG1052 LdhA Lactate dehydroge 100.0 3.2E-68 7E-73 515.8 31.0 273 72-366 37-320 (324)
8 PRK13243 glyoxylate reductase; 100.0 1.2E-67 2.5E-72 516.2 28.6 273 71-366 37-320 (333)
9 PLN03139 formate dehydrogenase 100.0 1.3E-66 2.9E-71 514.5 32.8 278 71-369 89-375 (386)
10 PRK11790 D-3-phosphoglycerate 100.0 2.8E-66 6.1E-71 518.6 32.6 306 33-366 7-324 (409)
11 PRK07574 formate dehydrogenase 100.0 3.2E-66 6.9E-71 512.1 30.7 278 71-369 82-368 (385)
12 PLN02306 hydroxypyruvate reduc 100.0 1.1E-64 2.4E-69 502.1 32.6 322 32-366 11-352 (386)
13 PRK12480 D-lactate dehydrogena 100.0 5E-64 1.1E-68 489.7 29.7 306 36-366 1-328 (330)
14 PRK13581 D-3-phosphoglycerate 100.0 4.2E-64 9.1E-69 517.9 30.4 303 37-366 1-310 (526)
15 TIGR01327 PGDH D-3-phosphoglyc 100.0 9E-64 1.9E-68 515.3 30.9 275 69-366 30-309 (525)
16 KOG0068 D-3-phosphoglycerate d 100.0 2E-63 4.3E-68 468.4 24.7 297 38-360 8-313 (406)
17 PRK15469 ghrA bifunctional gly 100.0 6E-62 1.3E-66 471.5 31.6 300 37-366 1-305 (312)
18 PRK08605 D-lactate dehydrogena 100.0 1.2E-60 2.7E-65 466.7 30.7 294 50-366 14-330 (332)
19 PRK06436 glycerate dehydrogena 100.0 1.9E-58 4E-63 444.9 32.6 253 77-363 32-285 (303)
20 KOG0069 Glyoxylate/hydroxypyru 100.0 6.7E-59 1.5E-63 446.7 24.2 272 73-366 54-333 (336)
21 PRK00257 erythronate-4-phospha 100.0 6.1E-58 1.3E-62 452.5 31.4 277 37-363 1-283 (381)
22 PRK15438 erythronate-4-phospha 100.0 5.7E-58 1.2E-62 451.5 31.1 276 37-362 1-281 (378)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 5.2E-49 1.1E-53 352.7 14.6 174 145-336 1-178 (178)
24 KOG0067 Transcription factor C 100.0 3.6E-30 7.9E-35 245.8 12.7 251 86-365 81-343 (435)
25 PTZ00075 Adenosylhomocysteinas 99.9 7.3E-21 1.6E-25 191.5 15.6 171 106-319 197-368 (476)
26 TIGR02853 spore_dpaA dipicolin 99.8 5.9E-20 1.3E-24 176.4 13.2 156 89-288 81-243 (287)
27 PF00389 2-Hacid_dh: D-isomer 99.8 4.6E-19 9.9E-24 151.2 9.3 98 39-144 1-101 (133)
28 PRK08306 dipicolinate synthase 99.6 2.5E-15 5.4E-20 145.1 14.7 173 75-287 51-243 (296)
29 PLN02494 adenosylhomocysteinas 99.6 9.9E-16 2.1E-20 154.2 8.7 121 173-315 250-373 (477)
30 TIGR00936 ahcY adenosylhomocys 99.5 2.3E-14 5E-19 143.1 8.9 120 173-314 191-312 (406)
31 PRK13403 ketol-acid reductoiso 99.5 2.8E-14 6.1E-19 137.4 7.1 93 173-284 12-105 (335)
32 COG2084 MmsB 3-hydroxyisobutyr 99.4 6.5E-13 1.4E-17 126.7 9.0 115 178-311 1-119 (286)
33 PF03446 NAD_binding_2: NAD bi 99.4 3.2E-13 6.9E-18 119.2 6.1 115 178-311 2-118 (163)
34 PRK05476 S-adenosyl-L-homocyst 99.3 3.8E-12 8.3E-17 127.9 9.6 155 106-297 155-312 (425)
35 TIGR01505 tartro_sem_red 2-hyd 99.3 9.9E-12 2.1E-16 119.5 8.9 109 179-305 1-113 (291)
36 PRK11559 garR tartronate semia 99.2 1.5E-11 3.3E-16 118.4 8.5 110 178-305 3-116 (296)
37 PRK15461 NADH-dependent gamma- 99.2 2.2E-11 4.8E-16 117.6 9.1 115 178-311 2-119 (296)
38 PRK12490 6-phosphogluconate de 99.2 3.4E-11 7.5E-16 116.4 9.9 112 179-311 2-118 (299)
39 PF00670 AdoHcyase_NAD: S-aden 99.1 5.4E-11 1.2E-15 104.2 6.2 104 173-297 19-123 (162)
40 PRK09599 6-phosphogluconate de 99.1 1.5E-10 3.2E-15 112.1 9.7 112 179-311 2-118 (301)
41 PRK05479 ketol-acid reductoiso 99.1 8.1E-11 1.8E-15 114.7 7.6 125 173-324 13-138 (330)
42 PLN02350 phosphogluconate dehy 99.1 1.8E-10 3.9E-15 118.1 8.8 129 178-316 7-138 (493)
43 cd00401 AdoHcyase S-adenosyl-L 99.0 4.4E-10 9.5E-15 112.8 8.4 104 172-297 197-302 (413)
44 PRK15059 tartronate semialdehy 99.0 6.1E-10 1.3E-14 107.5 9.1 112 179-311 2-117 (292)
45 KOG0409 Predicted dehydrogenas 99.0 8.1E-10 1.8E-14 104.6 8.0 118 175-311 33-154 (327)
46 PLN02256 arogenate dehydrogena 99.0 3.6E-09 7.9E-14 102.6 12.6 107 175-301 34-143 (304)
47 PTZ00142 6-phosphogluconate de 99.0 1.2E-09 2.5E-14 111.8 8.8 125 178-313 2-129 (470)
48 TIGR00872 gnd_rel 6-phosphoglu 99.0 2E-09 4.3E-14 104.1 9.8 112 179-311 2-117 (298)
49 PLN02712 arogenate dehydrogena 99.0 9.4E-10 2E-14 117.0 7.6 110 172-301 364-476 (667)
50 PLN02858 fructose-bisphosphate 99.0 2.6E-09 5.7E-14 121.4 11.5 116 177-311 324-444 (1378)
51 PLN02858 fructose-bisphosphate 99.0 1.7E-09 3.8E-14 122.8 9.7 119 176-311 3-124 (1378)
52 PRK11064 wecC UDP-N-acetyl-D-m 98.9 4.3E-09 9.3E-14 106.4 10.8 150 178-347 4-189 (415)
53 TIGR01692 HIBADH 3-hydroxyisob 98.9 1.9E-09 4.1E-14 103.7 7.6 110 182-311 1-114 (288)
54 TIGR00873 gnd 6-phosphoglucona 98.9 3E-09 6.4E-14 108.8 8.6 113 179-311 1-122 (467)
55 PRK15182 Vi polysaccharide bio 98.9 8.5E-09 1.8E-13 104.5 11.0 151 178-331 7-173 (425)
56 COG0677 WecC UDP-N-acetyl-D-ma 98.9 5.3E-09 1.2E-13 102.5 8.5 164 178-347 10-192 (436)
57 PRK08655 prephenate dehydrogen 98.8 1.6E-08 3.5E-13 102.9 10.5 141 178-344 1-145 (437)
58 PRK07502 cyclohexadienyl dehyd 98.8 2.8E-08 6E-13 96.4 10.4 145 177-345 6-162 (307)
59 PRK14619 NAD(P)H-dependent gly 98.8 1.5E-08 3.3E-13 98.4 8.2 83 176-289 3-86 (308)
60 PLN02545 3-hydroxybutyryl-CoA 98.8 3.4E-08 7.3E-13 95.3 10.5 119 178-300 5-132 (295)
61 PRK11199 tyrA bifunctional cho 98.8 1.2E-07 2.5E-12 94.8 14.4 118 139-297 69-187 (374)
62 TIGR00518 alaDH alanine dehydr 98.8 7.3E-08 1.6E-12 96.0 12.3 102 174-285 164-267 (370)
63 PRK08818 prephenate dehydrogen 98.8 1.4E-07 2.9E-12 93.8 13.9 122 176-334 3-130 (370)
64 PRK07417 arogenate dehydrogena 98.7 4E-08 8.6E-13 94.1 9.6 142 179-344 2-149 (279)
65 TIGR00465 ilvC ketol-acid redu 98.7 1.9E-08 4.1E-13 98.0 6.9 95 175-288 1-96 (314)
66 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 8E-08 1.7E-12 87.8 10.5 110 172-305 23-134 (200)
67 TIGR03026 NDP-sugDHase nucleot 98.7 8.8E-08 1.9E-12 96.7 11.7 161 179-347 2-184 (411)
68 PRK05225 ketol-acid reductoiso 98.7 1.4E-08 2.9E-13 101.9 5.4 102 172-288 31-133 (487)
69 PRK09260 3-hydroxybutyryl-CoA 98.7 1E-07 2.3E-12 91.6 11.0 131 178-312 2-141 (288)
70 PF07991 IlvN: Acetohydroxy ac 98.7 1.4E-08 3E-13 88.8 4.2 94 175-287 2-96 (165)
71 PRK15057 UDP-glucose 6-dehydro 98.7 9.1E-08 2E-12 95.9 9.8 144 179-331 2-160 (388)
72 PRK06545 prephenate dehydrogen 98.6 1.8E-07 3.8E-12 92.9 11.1 146 178-344 1-156 (359)
73 PLN02712 arogenate dehydrogena 98.6 3.5E-08 7.6E-13 105.1 6.5 95 174-288 49-146 (667)
74 PRK14194 bifunctional 5,10-met 98.6 9.9E-08 2.1E-12 91.9 8.7 132 172-358 154-286 (301)
75 PLN02688 pyrroline-5-carboxyla 98.6 2.4E-07 5.3E-12 87.7 11.0 101 178-300 1-108 (266)
76 PRK07066 3-hydroxybutyryl-CoA 98.6 2.9E-07 6.3E-12 89.9 11.5 121 178-300 8-132 (321)
77 PF03807 F420_oxidored: NADP o 98.6 1.9E-08 4E-13 80.4 2.4 89 179-287 1-96 (96)
78 PRK08507 prephenate dehydrogen 98.6 3E-07 6.5E-12 87.8 11.0 97 179-301 2-103 (275)
79 cd01065 NAD_bind_Shikimate_DH 98.6 1.8E-07 3.9E-12 81.0 8.4 114 174-305 16-134 (155)
80 COG0287 TyrA Prephenate dehydr 98.6 2.9E-07 6.3E-12 88.2 10.4 139 177-335 3-145 (279)
81 COG0499 SAM1 S-adenosylhomocys 98.6 1.5E-07 3.2E-12 91.3 7.9 104 173-297 205-309 (420)
82 PRK08293 3-hydroxybutyryl-CoA 98.6 4.8E-07 1E-11 87.0 11.3 157 178-346 4-169 (287)
83 PF03721 UDPG_MGDP_dh_N: UDP-g 98.6 1.1E-07 2.4E-12 85.8 6.3 152 178-331 1-171 (185)
84 PRK07530 3-hydroxybutyryl-CoA 98.5 5.7E-07 1.2E-11 86.6 10.6 131 178-313 5-144 (292)
85 cd01080 NAD_bind_m-THF_DH_Cycl 98.5 3.6E-07 7.8E-12 81.2 8.3 89 173-305 40-129 (168)
86 PRK14189 bifunctional 5,10-met 98.5 3.6E-07 7.7E-12 87.5 8.6 124 172-353 153-277 (285)
87 COG1023 Gnd Predicted 6-phosph 98.5 3.6E-07 7.8E-12 84.2 8.0 116 178-313 1-120 (300)
88 PRK12491 pyrroline-5-carboxyla 98.5 2.6E-07 5.6E-12 88.3 7.0 102 178-300 3-110 (272)
89 PRK07679 pyrroline-5-carboxyla 98.5 4.8E-07 1E-11 86.6 8.4 106 176-301 2-113 (279)
90 PRK13302 putative L-aspartate 98.5 3E-07 6.5E-12 87.9 6.9 108 176-305 5-118 (271)
91 PRK05808 3-hydroxybutyryl-CoA 98.5 1.5E-06 3.3E-11 83.2 11.6 120 178-301 4-132 (282)
92 PRK14618 NAD(P)H-dependent gly 98.5 4.7E-07 1E-11 88.6 8.2 117 177-301 4-123 (328)
93 PRK14188 bifunctional 5,10-met 98.4 6.4E-07 1.4E-11 86.3 8.8 131 172-354 153-285 (296)
94 PRK07531 bifunctional 3-hydrox 98.4 1.6E-06 3.4E-11 89.7 11.7 131 178-314 5-141 (495)
95 PRK14806 bifunctional cyclohex 98.4 1.2E-06 2.7E-11 94.7 11.2 139 178-337 4-153 (735)
96 PRK06035 3-hydroxyacyl-CoA deh 98.4 1.9E-06 4E-11 83.0 11.1 133 178-314 4-147 (291)
97 TIGR00561 pntA NAD(P) transhyd 98.4 5E-06 1.1E-10 85.7 14.7 199 78-286 63-285 (511)
98 PF01488 Shikimate_DH: Shikima 98.4 1.3E-07 2.8E-12 81.0 2.5 105 173-290 8-114 (135)
99 PRK07819 3-hydroxybutyryl-CoA 98.4 1.3E-06 2.7E-11 84.2 9.3 133 178-314 6-147 (286)
100 PRK06130 3-hydroxybutyryl-CoA 98.4 2.9E-06 6.2E-11 82.4 11.0 120 178-300 5-128 (311)
101 PRK14179 bifunctional 5,10-met 98.4 1.7E-06 3.7E-11 82.8 9.2 127 172-356 153-280 (284)
102 PRK06129 3-hydroxyacyl-CoA deh 98.3 3.6E-06 7.8E-11 81.8 11.3 156 178-345 3-166 (308)
103 PRK00094 gpsA NAD(P)H-dependen 98.3 7.5E-07 1.6E-11 86.5 5.9 108 178-289 2-109 (325)
104 PRK09287 6-phosphogluconate de 98.3 1.4E-06 3E-11 89.1 7.8 109 188-314 1-118 (459)
105 PRK14175 bifunctional 5,10-met 98.3 2.5E-06 5.3E-11 81.8 8.6 80 172-288 153-233 (286)
106 TIGR01724 hmd_rel H2-forming N 98.3 9.1E-06 2E-10 78.6 12.0 97 188-301 31-129 (341)
107 KOG1370 S-adenosylhomocysteine 98.3 1.6E-06 3.5E-11 82.4 6.5 95 174-289 211-305 (434)
108 PRK08268 3-hydroxy-acyl-CoA de 98.2 4.8E-06 1E-10 86.4 10.2 134 178-316 8-150 (507)
109 PRK05472 redox-sensing transcr 98.2 1.1E-06 2.3E-11 81.0 4.8 131 140-301 63-201 (213)
110 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.2 4.2E-06 9.2E-11 86.6 9.3 136 177-317 5-149 (503)
111 PLN02353 probable UDP-glucose 98.2 8.1E-06 1.7E-10 83.9 10.9 151 178-331 2-176 (473)
112 PF10727 Rossmann-like: Rossma 98.2 9.1E-07 2E-11 75.0 3.2 91 176-285 9-104 (127)
113 PRK06476 pyrroline-5-carboxyla 98.2 2.9E-06 6.3E-11 80.2 6.3 101 179-302 2-108 (258)
114 PRK07680 late competence prote 98.2 2.7E-06 6E-11 81.1 6.1 101 179-300 2-109 (273)
115 TIGR01035 hemA glutamyl-tRNA r 98.1 2.4E-06 5.2E-11 86.5 4.9 98 174-291 177-283 (417)
116 PF02882 THF_DHG_CYH_C: Tetrah 98.1 1.3E-05 2.8E-10 70.6 8.3 81 172-289 31-112 (160)
117 PRK09424 pntA NAD(P) transhydr 98.1 2.1E-05 4.5E-10 81.3 11.0 199 79-286 65-286 (509)
118 PRK10792 bifunctional 5,10-met 98.1 2.7E-05 5.8E-10 74.6 10.3 128 172-357 154-282 (285)
119 PF01210 NAD_Gly3P_dh_N: NAD-d 98.1 3.7E-06 8E-11 73.7 3.9 104 179-288 1-106 (157)
120 cd05212 NAD_bind_m-THF_DH_Cycl 98.0 4.4E-05 9.6E-10 65.8 10.4 80 172-288 23-103 (140)
121 COG2085 Predicted dinucleotide 98.0 1.1E-05 2.4E-10 73.6 6.9 94 178-287 2-95 (211)
122 COG0686 Ald Alanine dehydrogen 98.0 5.9E-06 1.3E-10 79.0 5.3 103 174-285 165-268 (371)
123 PRK14191 bifunctional 5,10-met 98.0 1.6E-05 3.4E-10 76.2 8.3 127 172-356 152-279 (285)
124 PRK14178 bifunctional 5,10-met 98.0 1.5E-05 3.3E-10 76.1 8.1 80 172-288 147-227 (279)
125 PLN00203 glutamyl-tRNA reducta 98.0 6.6E-06 1.4E-10 85.3 5.8 102 174-288 263-372 (519)
126 PF01262 AlaDh_PNT_C: Alanine 98.0 5.4E-06 1.2E-10 73.5 4.5 113 173-285 16-139 (168)
127 cd05213 NAD_bind_Glutamyl_tRNA 98.0 7E-06 1.5E-10 80.0 5.4 95 175-288 176-276 (311)
128 PRK14192 bifunctional 5,10-met 98.0 2.2E-05 4.7E-10 75.5 8.6 80 172-288 154-234 (283)
129 PRK11880 pyrroline-5-carboxyla 98.0 4E-05 8.6E-10 72.6 10.3 100 178-300 3-107 (267)
130 PRK06928 pyrroline-5-carboxyla 98.0 1.6E-05 3.5E-10 76.1 7.7 103 178-300 2-111 (277)
131 PRK14176 bifunctional 5,10-met 98.0 2.9E-05 6.2E-10 74.5 8.7 79 172-287 159-238 (287)
132 PRK13304 L-aspartate dehydroge 98.0 1.3E-05 2.7E-10 76.4 5.9 106 178-305 2-115 (265)
133 PRK00045 hemA glutamyl-tRNA re 97.9 8.1E-06 1.8E-10 82.8 4.8 94 174-287 179-282 (423)
134 cd05311 NAD_bind_2_malic_enz N 97.9 0.00013 2.7E-09 68.0 12.4 139 172-337 20-169 (226)
135 cd01079 NAD_bind_m-THF_DH NAD 97.9 8.1E-05 1.7E-09 67.3 10.2 96 171-286 56-157 (197)
136 PRK08229 2-dehydropantoate 2-r 97.9 2.7E-05 5.9E-10 76.3 7.7 121 178-305 3-126 (341)
137 COG0345 ProC Pyrroline-5-carbo 97.9 3.4E-05 7.4E-10 73.3 7.8 98 178-300 2-108 (266)
138 TIGR01915 npdG NADPH-dependent 97.9 1.6E-05 3.4E-10 73.5 5.2 105 178-290 1-106 (219)
139 COG0362 Gnd 6-phosphogluconate 97.9 0.0002 4.4E-09 70.6 12.8 161 178-363 4-169 (473)
140 PRK14982 acyl-ACP reductase; P 97.9 5.6E-05 1.2E-09 74.4 8.9 98 172-292 150-253 (340)
141 COG0059 IlvC Ketol-acid reduct 97.9 2.2E-05 4.9E-10 74.9 5.6 95 174-287 15-110 (338)
142 PRK14190 bifunctional 5,10-met 97.8 9.5E-05 2.1E-09 70.9 9.8 124 172-353 153-277 (284)
143 PRK14183 bifunctional 5,10-met 97.8 8.2E-05 1.8E-09 71.1 9.1 80 172-288 152-232 (281)
144 PF02737 3HCDH_N: 3-hydroxyacy 97.8 2.2E-05 4.7E-10 70.6 4.7 131 179-313 1-139 (180)
145 PRK07634 pyrroline-5-carboxyla 97.8 5E-05 1.1E-09 70.9 7.0 106 176-302 3-114 (245)
146 cd05191 NAD_bind_amino_acid_DH 97.8 0.00012 2.5E-09 57.6 7.9 67 173-285 19-86 (86)
147 cd01078 NAD_bind_H4MPT_DH NADP 97.8 0.0001 2.2E-09 66.6 8.6 110 172-290 23-134 (194)
148 KOG2380 Prephenate dehydrogena 97.8 3.2E-05 7E-10 74.7 5.4 136 176-338 51-193 (480)
149 PRK00258 aroE shikimate 5-dehy 97.8 4.3E-05 9.3E-10 73.2 6.3 103 173-288 119-224 (278)
150 PRK14170 bifunctional 5,10-met 97.8 0.00019 4.2E-09 68.7 10.5 128 172-357 152-280 (284)
151 PRK14169 bifunctional 5,10-met 97.7 0.00062 1.3E-08 65.2 13.5 127 172-356 151-278 (282)
152 COG0373 HemA Glutamyl-tRNA red 97.7 4.4E-05 9.6E-10 76.6 5.6 96 174-289 175-278 (414)
153 PRK06522 2-dehydropantoate 2-r 97.7 0.00011 2.4E-09 70.6 8.2 118 179-305 2-119 (304)
154 PTZ00431 pyrroline carboxylate 97.7 7.9E-05 1.7E-09 70.7 7.1 97 177-300 3-103 (260)
155 PRK14177 bifunctional 5,10-met 97.7 0.00018 3.8E-09 69.0 9.2 80 172-288 154-234 (284)
156 PRK14186 bifunctional 5,10-met 97.7 0.00026 5.7E-09 68.2 10.4 131 172-356 153-284 (297)
157 PRK14172 bifunctional 5,10-met 97.7 0.00027 5.8E-09 67.6 10.4 80 172-288 153-233 (278)
158 PRK14173 bifunctional 5,10-met 97.7 0.00019 4E-09 69.0 9.3 135 172-361 150-285 (287)
159 PRK12921 2-dehydropantoate 2-r 97.7 0.0001 2.3E-09 70.9 7.6 121 178-305 1-121 (305)
160 COG1004 Ugd Predicted UDP-gluc 97.7 0.00028 6.2E-09 69.9 10.6 151 178-331 1-169 (414)
161 PRK14171 bifunctional 5,10-met 97.7 0.0003 6.4E-09 67.6 10.2 127 172-356 154-281 (288)
162 PRK06141 ornithine cyclodeamin 97.7 0.0001 2.2E-09 71.9 7.1 91 176-285 124-219 (314)
163 PRK14166 bifunctional 5,10-met 97.7 0.00022 4.7E-09 68.3 9.1 80 172-288 152-232 (282)
164 PRK14180 bifunctional 5,10-met 97.6 0.00025 5.4E-09 67.9 9.1 80 172-288 153-233 (282)
165 PRK14187 bifunctional 5,10-met 97.6 0.00025 5.4E-09 68.3 8.9 80 172-288 155-235 (294)
166 PRK12557 H(2)-dependent methyl 97.6 0.0001 2.2E-09 72.8 6.4 98 189-300 32-132 (342)
167 PRK13940 glutamyl-tRNA reducta 97.6 8E-05 1.7E-09 75.4 5.6 92 174-287 178-275 (414)
168 PRK07340 ornithine cyclodeamin 97.6 8.5E-05 1.8E-09 72.2 5.5 93 176-288 124-220 (304)
169 PRK14193 bifunctional 5,10-met 97.6 0.00036 7.8E-09 66.9 9.4 122 172-352 153-277 (284)
170 PLN02516 methylenetetrahydrofo 97.6 0.00034 7.3E-09 67.5 9.3 135 172-358 162-297 (299)
171 COG0190 FolD 5,10-methylene-te 97.6 0.00084 1.8E-08 63.9 11.7 120 172-349 151-271 (283)
172 PRK14182 bifunctional 5,10-met 97.6 0.00036 7.7E-09 66.8 9.2 81 172-289 152-233 (282)
173 PLN02616 tetrahydrofolate dehy 97.6 0.00033 7.1E-09 69.0 9.0 130 172-353 226-356 (364)
174 TIGR00507 aroE shikimate 5-deh 97.6 0.00022 4.8E-09 68.0 7.7 112 175-305 115-232 (270)
175 PLN02897 tetrahydrofolate dehy 97.6 0.00033 7.2E-09 68.6 8.9 132 172-355 209-341 (345)
176 PRK14181 bifunctional 5,10-met 97.5 0.00041 9E-09 66.6 9.3 80 172-288 148-232 (287)
177 TIGR01546 GAPDH-II_archae glyc 97.5 0.00015 3.3E-09 71.1 6.3 102 180-284 1-107 (333)
178 PRK14174 bifunctional 5,10-met 97.5 0.00038 8.2E-09 67.2 8.9 80 172-288 154-238 (295)
179 PRK14184 bifunctional 5,10-met 97.5 0.00039 8.5E-09 66.7 8.7 80 172-288 152-236 (286)
180 PF02153 PDH: Prephenate dehyd 97.5 0.00031 6.7E-09 66.6 7.8 127 192-336 1-133 (258)
181 TIGR02371 ala_DH_arch alanine 97.5 0.00017 3.8E-09 70.7 6.2 90 177-286 128-223 (325)
182 PRK00676 hemA glutamyl-tRNA re 97.5 0.00034 7.4E-09 68.7 7.5 92 174-287 171-263 (338)
183 TIGR02354 thiF_fam2 thiamine b 97.5 0.00031 6.6E-09 64.2 6.8 111 173-284 17-144 (200)
184 PRK14168 bifunctional 5,10-met 97.4 0.00064 1.4E-08 65.6 9.2 134 172-357 156-294 (297)
185 PRK14185 bifunctional 5,10-met 97.4 0.00071 1.5E-08 65.2 9.3 80 172-288 152-236 (293)
186 PRK09310 aroDE bifunctional 3- 97.4 0.00036 7.8E-09 72.0 7.6 72 172-261 327-402 (477)
187 KOG2653 6-phosphogluconate deh 97.4 0.0015 3.3E-08 63.7 11.1 162 178-363 7-173 (487)
188 cd01076 NAD_bind_1_Glu_DH NAD( 97.4 0.0027 5.8E-08 59.2 11.9 124 173-306 27-155 (227)
189 PRK14167 bifunctional 5,10-met 97.3 0.001 2.2E-08 64.2 9.3 80 172-288 152-236 (297)
190 COG1748 LYS9 Saccharopine dehy 97.3 0.00065 1.4E-08 67.9 7.0 114 178-304 2-117 (389)
191 PRK08618 ornithine cyclodeamin 97.2 0.00047 1E-08 67.6 5.7 95 176-286 126-222 (325)
192 PRK06249 2-dehydropantoate 2-r 97.2 0.0028 6E-08 61.7 11.0 121 178-307 6-127 (313)
193 TIGR02992 ectoine_eutC ectoine 97.2 0.00062 1.3E-08 66.8 6.3 96 176-286 128-225 (326)
194 cd05313 NAD_bind_2_Glu_DH NAD( 97.2 0.0036 7.7E-08 59.3 11.1 127 172-305 33-172 (254)
195 COG0240 GpsA Glycerol-3-phosph 97.2 0.00073 1.6E-08 65.8 6.5 108 178-291 2-111 (329)
196 PRK11730 fadB multifunctional 97.2 0.0012 2.6E-08 71.5 8.7 132 178-313 314-453 (715)
197 PRK12549 shikimate 5-dehydroge 97.2 0.001 2.2E-08 64.1 7.3 104 174-288 124-230 (284)
198 TIGR02356 adenyl_thiF thiazole 97.2 0.00018 3.8E-09 65.8 1.9 44 166-209 10-54 (202)
199 PLN02477 glutamate dehydrogena 97.1 0.015 3.3E-07 58.8 15.6 125 172-306 201-330 (410)
200 COG1064 AdhP Zn-dependent alco 97.1 0.00078 1.7E-08 66.1 6.0 90 176-285 166-259 (339)
201 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0041 9E-08 57.5 10.4 123 173-305 19-145 (217)
202 PRK06046 alanine dehydrogenase 97.1 0.00072 1.6E-08 66.4 5.7 90 177-286 129-224 (326)
203 PRK09414 glutamate dehydrogena 97.1 0.0025 5.5E-08 64.9 9.6 127 172-305 227-362 (445)
204 COG1250 FadB 3-hydroxyacyl-CoA 97.1 0.0025 5.5E-08 61.8 9.0 135 177-315 3-145 (307)
205 PF02423 OCD_Mu_crystall: Orni 97.1 0.00062 1.3E-08 66.5 4.7 94 178-289 129-228 (313)
206 PRK12439 NAD(P)H-dependent gly 97.1 0.00063 1.4E-08 67.1 4.7 104 178-288 8-114 (341)
207 PF13241 NAD_binding_7: Putati 97.1 0.00045 9.8E-09 56.2 3.1 88 174-285 4-91 (103)
208 COG0026 PurK Phosphoribosylami 97.0 0.00093 2E-08 65.7 5.6 67 177-255 1-68 (375)
209 PRK14031 glutamate dehydrogena 97.0 0.0038 8.3E-08 63.5 10.1 127 172-305 223-361 (444)
210 TIGR03376 glycerol3P_DH glycer 97.0 0.0014 3E-08 64.8 6.8 108 179-288 1-119 (342)
211 COG1712 Predicted dinucleotide 97.0 0.0012 2.6E-08 60.8 5.9 94 178-293 1-99 (255)
212 TIGR02437 FadB fatty oxidation 97.0 0.0023 5.1E-08 69.2 8.8 132 178-313 314-453 (714)
213 PTZ00345 glycerol-3-phosphate 97.0 0.0013 2.7E-08 65.6 6.1 110 178-289 12-133 (365)
214 PRK06823 ornithine cyclodeamin 97.0 0.0014 3E-08 64.1 6.1 94 177-286 128-223 (315)
215 PRK12475 thiamine/molybdopteri 97.0 0.00092 2E-08 66.0 4.9 105 167-272 14-138 (338)
216 PRK08291 ectoine utilization p 97.0 0.0011 2.4E-08 65.1 5.4 95 176-285 131-227 (330)
217 PRK14620 NAD(P)H-dependent gly 96.9 0.0018 4E-08 63.2 6.8 105 179-288 2-109 (326)
218 smart00859 Semialdhyde_dh Semi 96.9 0.0032 6.9E-08 52.4 7.3 97 179-286 1-100 (122)
219 COG2423 Predicted ornithine cy 96.9 0.002 4.4E-08 63.2 6.8 95 177-286 130-226 (330)
220 PRK11154 fadJ multifunctional 96.9 0.0028 6.1E-08 68.5 8.5 132 178-313 310-450 (708)
221 TIGR02441 fa_ox_alpha_mit fatt 96.9 0.0023 5E-08 69.4 7.9 132 178-313 336-475 (737)
222 TIGR01921 DAP-DH diaminopimela 96.9 0.0019 4.1E-08 63.2 6.4 106 178-305 4-115 (324)
223 TIGR02440 FadJ fatty oxidation 96.9 0.0032 6.9E-08 68.0 8.7 132 178-313 305-445 (699)
224 PRK06444 prephenate dehydrogen 96.8 0.0034 7.3E-08 57.3 7.1 61 179-289 2-63 (197)
225 TIGR01470 cysG_Nterm siroheme 96.8 0.0017 3.7E-08 59.6 5.2 40 172-211 4-43 (205)
226 PF00208 ELFV_dehydrog: Glutam 96.8 0.0026 5.6E-08 59.9 6.4 122 173-305 28-165 (244)
227 PRK06199 ornithine cyclodeamin 96.8 0.002 4.4E-08 64.5 5.9 100 177-286 155-260 (379)
228 TIGR01763 MalateDH_bact malate 96.8 0.0024 5.1E-08 62.2 6.2 126 178-310 2-147 (305)
229 PF01408 GFO_IDH_MocA: Oxidore 96.8 0.00096 2.1E-08 54.9 3.0 65 179-260 2-73 (120)
230 PF13380 CoA_binding_2: CoA bi 96.8 0.0041 9E-08 51.8 6.8 101 178-306 1-105 (116)
231 PRK13301 putative L-aspartate 96.8 0.0034 7.4E-08 59.5 6.9 103 178-302 3-113 (267)
232 PRK06407 ornithine cyclodeamin 96.8 0.0024 5.1E-08 62.1 5.9 91 177-286 117-213 (301)
233 KOG0023 Alcohol dehydrogenase, 96.8 0.0025 5.4E-08 61.7 5.8 37 176-212 181-217 (360)
234 PRK14030 glutamate dehydrogena 96.8 0.032 6.9E-07 56.9 14.1 174 172-357 223-410 (445)
235 cd00757 ThiF_MoeB_HesA_family 96.8 0.00085 1.8E-08 62.4 2.6 116 166-285 10-143 (228)
236 PRK06718 precorrin-2 dehydroge 96.7 0.0024 5.3E-08 58.4 5.3 39 172-210 5-43 (202)
237 TIGR01809 Shik-DH-AROM shikima 96.7 0.0014 3.1E-08 63.0 3.4 79 174-260 122-201 (282)
238 COG5322 Predicted dehydrogenas 96.6 0.0082 1.8E-07 56.8 8.2 105 171-292 161-268 (351)
239 PRK12548 shikimate 5-dehydroge 96.6 0.0075 1.6E-07 58.2 8.1 37 174-210 123-160 (289)
240 TIGR02964 xanthine_xdhC xanthi 96.6 0.0076 1.6E-07 56.9 7.9 89 178-305 101-189 (246)
241 PF13478 XdhC_C: XdhC Rossmann 96.6 0.0048 1E-07 52.9 5.9 86 180-309 1-86 (136)
242 PTZ00117 malate dehydrogenase; 96.6 0.0071 1.5E-07 59.2 7.7 130 175-310 3-151 (319)
243 PRK07589 ornithine cyclodeamin 96.5 0.0044 9.6E-08 61.3 6.0 96 177-286 129-226 (346)
244 PRK05690 molybdopterin biosynt 96.5 0.0034 7.3E-08 59.2 4.9 116 166-285 21-154 (245)
245 COG0334 GdhA Glutamate dehydro 96.5 0.0055 1.2E-07 61.3 6.4 121 173-305 203-330 (411)
246 PRK07688 thiamine/molybdopteri 96.4 0.0032 6.9E-08 62.2 4.4 44 167-210 14-58 (339)
247 cd00650 LDH_MDH_like NAD-depen 96.4 0.0047 1E-07 58.6 5.2 127 180-312 1-149 (263)
248 TIGR03026 NDP-sugDHase nucleot 96.4 0.024 5.3E-07 57.3 10.5 89 174-284 310-409 (411)
249 PRK06719 precorrin-2 dehydroge 96.3 0.0069 1.5E-07 53.2 5.3 41 170-210 6-46 (157)
250 PTZ00079 NADP-specific glutama 96.2 0.062 1.3E-06 54.9 12.4 127 172-305 232-371 (454)
251 PRK06019 phosphoribosylaminoim 96.2 0.0078 1.7E-07 60.0 5.5 36 177-212 2-37 (372)
252 PRK01710 murD UDP-N-acetylmura 96.2 0.015 3.2E-07 59.6 7.7 120 174-303 11-143 (458)
253 PF02558 ApbA: Ketopantoate re 96.1 0.0031 6.7E-08 54.2 2.0 122 180-307 1-122 (151)
254 PRK00048 dihydrodipicolinate r 96.1 0.018 4E-07 54.5 7.5 64 178-259 2-70 (257)
255 KOG2304 3-hydroxyacyl-CoA dehy 96.1 0.0014 3.1E-08 60.3 -0.3 155 176-340 10-178 (298)
256 PRK05600 thiamine biosynthesis 96.1 0.0079 1.7E-07 60.1 4.9 115 158-273 22-154 (370)
257 PRK05597 molybdopterin biosynt 96.1 0.0076 1.6E-07 59.9 4.8 51 160-210 11-62 (355)
258 COG3288 PntA NAD/NADP transhyd 96.1 0.0047 1E-07 59.4 3.1 107 173-285 160-281 (356)
259 cd05312 NAD_bind_1_malic_enz N 96.0 0.12 2.6E-06 49.6 12.6 165 140-337 4-195 (279)
260 PRK08269 3-hydroxybutyryl-CoA 96.0 0.054 1.2E-06 52.9 10.2 111 188-300 1-128 (314)
261 TIGR01850 argC N-acetyl-gamma- 96.0 0.016 3.5E-07 57.4 6.6 96 178-286 1-100 (346)
262 cd00762 NAD_bind_malic_enz NAD 96.0 0.093 2E-06 49.6 11.3 171 140-337 4-196 (254)
263 PRK13303 L-aspartate dehydroge 95.9 0.015 3.3E-07 55.4 6.0 107 178-304 2-114 (265)
264 PF01118 Semialdhyde_dh: Semia 95.9 0.012 2.6E-07 49.1 4.7 95 179-287 1-99 (121)
265 PF03720 UDPG_MGDP_dh_C: UDP-g 95.9 0.011 2.4E-07 48.2 4.3 81 188-284 18-100 (106)
266 PRK08306 dipicolinate synthase 95.9 0.072 1.6E-06 51.6 10.6 106 176-305 1-116 (296)
267 PRK00856 pyrB aspartate carbam 95.9 0.052 1.1E-06 52.9 9.6 65 174-256 153-220 (305)
268 COG0569 TrkA K+ transport syst 95.9 0.0078 1.7E-07 56.0 3.6 76 178-261 1-78 (225)
269 PRK00683 murD UDP-N-acetylmura 95.8 0.015 3.2E-07 58.9 6.0 110 177-302 3-127 (418)
270 PF00185 OTCace: Aspartate/orn 95.8 0.049 1.1E-06 47.8 8.4 103 176-285 1-120 (158)
271 cd05291 HicDH_like L-2-hydroxy 95.8 0.02 4.3E-07 55.7 6.5 102 178-285 1-117 (306)
272 PRK06223 malate dehydrogenase; 95.8 0.016 3.5E-07 56.1 5.9 125 178-308 3-144 (307)
273 COG0281 SfcA Malic enzyme [Ene 95.8 0.11 2.4E-06 52.2 11.7 193 121-357 165-368 (432)
274 PLN02353 probable UDP-glucose 95.7 0.05 1.1E-06 56.1 9.4 119 174-296 321-456 (473)
275 COG0169 AroE Shikimate 5-dehyd 95.7 0.025 5.5E-07 54.4 6.7 100 173-289 122-230 (283)
276 PRK08762 molybdopterin biosynt 95.7 0.015 3.3E-07 58.2 5.3 43 167-209 125-168 (376)
277 PLN02520 bifunctional 3-dehydr 95.7 0.019 4.1E-07 60.1 6.2 38 174-211 376-413 (529)
278 PRK07232 bifunctional malic en 95.7 0.15 3.3E-06 55.3 13.2 134 122-289 152-288 (752)
279 PRK12862 malic enzyme; Reviewe 95.7 0.14 3.1E-06 55.7 12.9 133 123-289 161-296 (763)
280 PRK14027 quinate/shikimate deh 95.7 0.031 6.6E-07 53.9 7.0 39 174-212 124-163 (283)
281 PRK12749 quinate/shikimate deh 95.6 0.038 8.2E-07 53.4 7.6 39 173-211 120-159 (288)
282 PLN02968 Probable N-acetyl-gam 95.6 0.018 3.8E-07 57.9 5.2 103 176-294 37-143 (381)
283 PF01113 DapB_N: Dihydrodipico 95.5 0.042 9.1E-07 46.1 6.6 106 179-301 2-114 (124)
284 TIGR02355 moeB molybdopterin s 95.5 0.0084 1.8E-07 56.3 2.6 101 173-274 20-138 (240)
285 PRK03369 murD UDP-N-acetylmura 95.5 0.018 3.9E-07 59.6 5.2 114 175-302 10-142 (488)
286 cd01486 Apg7 Apg7 is an E1-lik 95.5 0.035 7.6E-07 53.8 6.8 31 179-209 1-32 (307)
287 PF13460 NAD_binding_10: NADH( 95.5 0.015 3.3E-07 51.1 3.9 71 180-262 1-73 (183)
288 PRK08644 thiamine biosynthesis 95.5 0.027 5.8E-07 51.9 5.6 38 172-209 23-61 (212)
289 COG1648 CysG Siroheme synthase 95.4 0.018 3.8E-07 53.1 4.1 97 172-285 7-103 (210)
290 PRK12861 malic enzyme; Reviewe 95.4 0.13 2.7E-06 55.9 11.1 133 123-289 157-292 (764)
291 TIGR00670 asp_carb_tr aspartat 95.4 0.08 1.7E-06 51.5 8.8 97 174-284 147-262 (301)
292 cd05297 GH4_alpha_glucosidase_ 95.3 0.023 5E-07 57.8 5.1 75 179-259 2-84 (423)
293 PLN02948 phosphoribosylaminoim 95.2 0.034 7.4E-07 58.8 6.3 39 173-211 18-56 (577)
294 PTZ00082 L-lactate dehydrogena 95.2 0.035 7.5E-07 54.5 5.9 129 175-308 4-153 (321)
295 PRK09880 L-idonate 5-dehydroge 95.2 0.048 1E-06 53.3 6.6 94 176-287 169-268 (343)
296 PRK05708 2-dehydropantoate 2-r 95.1 0.054 1.2E-06 52.6 6.9 123 178-307 3-125 (305)
297 PF02254 TrkA_N: TrkA-N domain 95.1 0.031 6.7E-07 45.6 4.5 88 180-282 1-93 (116)
298 TIGR01161 purK phosphoribosyla 95.1 0.031 6.7E-07 55.2 5.2 34 179-212 1-34 (352)
299 PLN02819 lysine-ketoglutarate 95.1 0.035 7.7E-07 62.1 5.9 73 176-259 568-658 (1042)
300 PF03435 Saccharop_dh: Sacchar 95.0 0.018 3.9E-07 57.5 3.3 76 180-260 1-78 (386)
301 PRK07411 hypothetical protein; 95.0 0.031 6.6E-07 56.3 4.9 110 167-277 28-155 (390)
302 cd05293 LDH_1 A subgroup of L- 95.0 0.055 1.2E-06 52.9 6.5 125 178-308 4-145 (312)
303 cd05292 LDH_2 A subgroup of L- 95.0 0.029 6.3E-07 54.6 4.5 100 179-285 2-116 (308)
304 COG0771 MurD UDP-N-acetylmuram 94.9 0.14 3E-06 52.4 9.3 130 175-315 5-156 (448)
305 PRK07878 molybdopterin biosynt 94.9 0.032 6.8E-07 56.2 4.6 44 167-210 32-76 (392)
306 PRK15182 Vi polysaccharide bio 94.9 0.15 3.2E-06 52.0 9.6 96 172-289 309-416 (425)
307 PRK09496 trkA potassium transp 94.9 0.02 4.3E-07 58.2 3.1 73 178-261 1-77 (453)
308 PRK00436 argC N-acetyl-gamma-g 94.8 0.057 1.2E-06 53.4 6.2 97 178-290 3-104 (343)
309 TIGR01761 thiaz-red thiazoliny 94.8 0.09 1.9E-06 52.1 7.5 110 178-307 4-119 (343)
310 PRK00066 ldh L-lactate dehydro 94.8 0.039 8.5E-07 53.9 4.9 104 175-286 4-123 (315)
311 PRK00141 murD UDP-N-acetylmura 94.8 0.037 8E-07 57.1 4.9 118 173-303 11-147 (473)
312 PLN02527 aspartate carbamoyltr 94.8 0.16 3.4E-06 49.5 9.0 98 174-284 148-265 (306)
313 PRK05086 malate dehydrogenase; 94.8 0.081 1.8E-06 51.6 7.0 103 178-288 1-121 (312)
314 PRK11579 putative oxidoreducta 94.7 0.051 1.1E-06 53.5 5.4 66 178-260 5-75 (346)
315 PRK10669 putative cation:proto 94.7 0.036 7.9E-07 58.3 4.6 91 178-282 418-512 (558)
316 cd01492 Aos1_SUMO Ubiquitin ac 94.6 0.022 4.7E-07 51.9 2.4 44 167-210 11-55 (197)
317 PRK03659 glutathione-regulated 94.6 0.044 9.5E-07 58.3 5.0 95 178-286 401-499 (601)
318 PRK10637 cysG siroheme synthas 94.6 0.045 9.8E-07 56.2 4.9 98 171-285 6-103 (457)
319 cd01487 E1_ThiF_like E1_ThiF_l 94.6 0.071 1.5E-06 47.5 5.6 32 179-210 1-33 (174)
320 PF04016 DUF364: Domain of unk 94.6 0.081 1.7E-06 45.9 5.7 85 175-286 9-96 (147)
321 PRK11064 wecC UDP-N-acetyl-D-m 94.5 0.13 2.8E-06 52.2 8.1 72 172-260 315-397 (415)
322 PRK08223 hypothetical protein; 94.5 0.08 1.7E-06 51.0 6.1 38 172-209 22-60 (287)
323 PRK01713 ornithine carbamoyltr 94.5 0.57 1.2E-05 46.3 12.1 103 174-285 153-275 (334)
324 TIGR01202 bchC 2-desacetyl-2-h 94.4 0.075 1.6E-06 51.3 5.8 88 176-286 144-232 (308)
325 PRK02255 putrescine carbamoylt 94.4 0.23 5.1E-06 49.0 9.1 103 174-285 151-272 (338)
326 PRK04207 glyceraldehyde-3-phos 94.3 0.073 1.6E-06 52.6 5.6 82 178-260 2-89 (341)
327 PRK12550 shikimate 5-dehydroge 94.3 0.1 2.2E-06 50.0 6.5 36 177-212 122-158 (272)
328 COG0673 MviM Predicted dehydro 94.3 0.05 1.1E-06 52.9 4.4 66 178-260 4-78 (342)
329 PRK04148 hypothetical protein; 94.3 0.059 1.3E-06 46.1 4.2 36 176-212 16-51 (134)
330 PRK00421 murC UDP-N-acetylmura 94.3 0.067 1.4E-06 54.9 5.5 116 174-303 4-133 (461)
331 PRK06270 homoserine dehydrogen 94.3 0.093 2E-06 51.9 6.2 127 178-305 3-146 (341)
332 TIGR02853 spore_dpaA dipicolin 94.3 0.38 8.2E-06 46.4 10.3 111 177-313 1-121 (287)
333 TIGR03366 HpnZ_proposed putati 94.3 0.11 2.3E-06 49.4 6.5 36 176-211 120-156 (280)
334 cd05188 MDR Medium chain reduc 94.3 0.18 3.8E-06 46.4 7.8 98 175-288 133-235 (271)
335 cd01339 LDH-like_MDH L-lactate 94.2 0.061 1.3E-06 52.0 4.8 124 180-308 1-140 (300)
336 PRK00779 ornithine carbamoyltr 94.2 0.25 5.4E-06 48.1 8.9 98 175-284 150-264 (304)
337 PRK08328 hypothetical protein; 94.2 0.041 8.9E-07 51.3 3.3 44 167-210 17-61 (231)
338 cd00300 LDH_like L-lactate deh 94.1 0.064 1.4E-06 52.0 4.7 100 180-286 1-116 (300)
339 cd08230 glucose_DH Glucose deh 94.1 0.052 1.1E-06 53.3 4.1 92 176-286 172-270 (355)
340 TIGR02717 AcCoA-syn-alpha acet 94.1 0.28 6.2E-06 50.3 9.5 109 175-307 5-125 (447)
341 cd08237 ribitol-5-phosphate_DH 94.1 0.13 2.9E-06 50.3 6.8 91 176-286 163-257 (341)
342 PRK02472 murD UDP-N-acetylmura 93.9 0.07 1.5E-06 54.2 4.7 119 174-302 2-133 (447)
343 PRK14106 murD UDP-N-acetylmura 93.8 0.063 1.4E-06 54.6 4.2 119 174-301 2-132 (450)
344 PF03949 Malic_M: Malic enzyme 93.8 0.31 6.7E-06 46.2 8.3 137 140-303 4-159 (255)
345 PRK03562 glutathione-regulated 93.7 0.095 2.1E-06 56.0 5.4 93 177-283 400-496 (621)
346 COG1004 Ugd Predicted UDP-gluc 93.7 0.19 4.2E-06 50.2 7.1 89 175-283 308-406 (414)
347 PRK13529 malate dehydrogenase; 93.7 1.5 3.2E-05 46.1 13.8 176 97-300 237-432 (563)
348 PRK09496 trkA potassium transp 93.7 0.13 2.8E-06 52.3 6.1 38 175-212 229-266 (453)
349 PRK11891 aspartate carbamoyltr 93.6 0.2 4.4E-06 50.9 7.2 98 174-284 238-354 (429)
350 PF00899 ThiF: ThiF family; I 93.6 0.055 1.2E-06 45.8 2.7 34 177-210 2-36 (135)
351 PRK14851 hypothetical protein; 93.5 0.2 4.3E-06 54.0 7.4 181 172-361 38-255 (679)
352 PF02629 CoA_binding: CoA bind 93.5 0.14 3E-06 40.9 4.8 67 177-260 3-73 (96)
353 PRK13814 pyrB aspartate carbam 93.4 0.4 8.6E-06 46.8 8.7 65 175-255 155-223 (310)
354 PF00070 Pyr_redox: Pyridine n 93.4 0.11 2.4E-06 39.7 3.8 34 179-212 1-34 (80)
355 COG0493 GltD NADPH-dependent g 93.3 0.83 1.8E-05 47.0 11.3 42 171-212 117-158 (457)
356 PRK02006 murD UDP-N-acetylmura 93.3 0.092 2E-06 54.4 4.4 36 175-210 5-40 (498)
357 COG2344 AT-rich DNA-binding pr 93.3 0.08 1.7E-06 47.6 3.3 67 179-260 86-157 (211)
358 PLN02586 probable cinnamyl alc 93.2 0.24 5.1E-06 49.0 7.0 94 176-286 183-279 (360)
359 PRK01390 murD UDP-N-acetylmura 93.2 0.098 2.1E-06 53.6 4.4 113 174-302 6-139 (460)
360 PRK07877 hypothetical protein; 93.2 0.25 5.4E-06 53.5 7.6 99 172-274 102-220 (722)
361 PLN02819 lysine-ketoglutarate 93.2 0.18 3.9E-06 56.6 6.6 110 174-285 200-338 (1042)
362 PLN02383 aspartate semialdehyd 93.2 0.16 3.5E-06 50.3 5.7 87 176-285 6-100 (344)
363 TIGR01851 argC_other N-acetyl- 93.2 0.26 5.7E-06 48.0 6.9 76 179-285 3-80 (310)
364 PLN03129 NADP-dependent malic 93.1 1.3 2.8E-05 46.6 12.4 137 121-289 287-440 (581)
365 PRK10206 putative oxidoreducta 93.1 0.12 2.6E-06 51.0 4.6 64 179-260 3-75 (344)
366 COG1893 ApbA Ketopantoate redu 93.1 0.95 2.1E-05 44.1 10.8 153 178-339 1-154 (307)
367 COG2910 Putative NADH-flavin r 93.0 0.19 4.2E-06 45.2 5.3 71 178-259 1-72 (211)
368 TIGR01772 MDH_euk_gproteo mala 93.0 0.19 4.2E-06 49.1 5.9 102 179-287 1-118 (312)
369 PRK06128 oxidoreductase; Provi 93.0 0.23 4.9E-06 47.6 6.4 36 174-209 52-88 (300)
370 COG1063 Tdh Threonine dehydrog 93.0 0.14 3E-06 50.7 4.9 93 179-288 171-272 (350)
371 TIGR02822 adh_fam_2 zinc-bindi 93.0 0.16 3.5E-06 49.5 5.3 88 176-286 165-255 (329)
372 PLN02342 ornithine carbamoyltr 92.9 0.6 1.3E-05 46.3 9.2 102 174-284 191-306 (348)
373 PRK06349 homoserine dehydrogen 92.8 0.28 6.1E-06 50.0 7.0 108 178-305 4-125 (426)
374 PRK07523 gluconate 5-dehydroge 92.8 0.15 3.3E-06 47.3 4.7 38 174-211 7-45 (255)
375 PRK02102 ornithine carbamoyltr 92.8 0.36 7.7E-06 47.6 7.4 102 174-284 152-272 (331)
376 TIGR00658 orni_carb_tr ornithi 92.8 0.68 1.5E-05 45.1 9.3 101 175-284 146-263 (304)
377 PLN00106 malate dehydrogenase 92.8 0.3 6.5E-06 48.0 6.8 107 176-289 17-139 (323)
378 PRK14852 hypothetical protein; 92.8 0.62 1.3E-05 51.9 9.8 183 167-361 322-544 (989)
379 PTZ00325 malate dehydrogenase; 92.7 0.33 7.1E-06 47.7 7.1 108 174-288 5-128 (321)
380 PRK04690 murD UDP-N-acetylmura 92.7 0.13 2.8E-06 53.0 4.4 117 175-302 6-140 (468)
381 PRK11863 N-acetyl-gamma-glutam 92.7 0.26 5.7E-06 48.1 6.3 77 178-285 3-81 (313)
382 cd05294 LDH-like_MDH_nadp A la 92.7 0.38 8.2E-06 46.9 7.4 33 178-210 1-36 (309)
383 cd01485 E1-1_like Ubiquitin ac 92.7 0.063 1.4E-06 48.9 1.8 44 167-210 9-53 (198)
384 CHL00194 ycf39 Ycf39; Provisio 92.7 0.15 3.3E-06 49.3 4.7 71 178-258 1-73 (317)
385 COG2227 UbiG 2-polyprenyl-3-me 92.6 0.34 7.4E-06 45.3 6.6 94 175-283 58-159 (243)
386 TIGR03649 ergot_EASG ergot alk 92.6 0.25 5.4E-06 46.8 6.0 69 179-260 1-78 (285)
387 PRK07231 fabG 3-ketoacyl-(acyl 92.6 0.22 4.7E-06 45.7 5.4 38 174-211 2-40 (251)
388 PRK08265 short chain dehydroge 92.5 0.3 6.5E-06 45.6 6.3 39 173-211 2-41 (261)
389 KOG0022 Alcohol dehydrogenase, 92.5 0.11 2.4E-06 50.4 3.2 38 175-212 191-229 (375)
390 PRK14874 aspartate-semialdehyd 92.5 0.18 3.9E-06 49.6 4.9 90 177-286 1-95 (334)
391 PRK05562 precorrin-2 dehydroge 92.5 3.8 8.1E-05 38.1 13.3 41 172-212 20-60 (223)
392 cd08281 liver_ADH_like1 Zinc-d 92.4 0.29 6.2E-06 48.5 6.3 37 176-212 191-228 (371)
393 PRK08192 aspartate carbamoyltr 92.3 0.41 8.8E-06 47.3 7.1 71 173-256 155-233 (338)
394 PRK01438 murD UDP-N-acetylmura 92.2 0.16 3.4E-06 52.3 4.3 38 173-210 12-49 (480)
395 cd01483 E1_enzyme_family Super 92.2 0.16 3.4E-06 43.4 3.6 32 179-210 1-33 (143)
396 PRK04308 murD UDP-N-acetylmura 92.2 0.17 3.7E-06 51.5 4.5 119 175-303 3-136 (445)
397 PLN03209 translocon at the inn 92.2 0.16 3.6E-06 53.4 4.4 38 175-212 78-116 (576)
398 PRK14804 ornithine carbamoyltr 92.1 0.59 1.3E-05 45.7 7.9 72 174-256 150-225 (311)
399 PLN02602 lactate dehydrogenase 91.9 0.27 5.7E-06 48.9 5.3 101 178-286 38-155 (350)
400 PTZ00317 NADP-dependent malic 91.8 18 0.00038 38.2 18.6 206 96-337 238-471 (559)
401 TIGR03451 mycoS_dep_FDH mycoth 91.8 0.43 9.3E-06 46.9 6.7 37 176-212 176-213 (358)
402 cd08239 THR_DH_like L-threonin 91.8 0.38 8.2E-06 46.6 6.2 37 176-212 163-200 (339)
403 PLN02662 cinnamyl-alcohol dehy 91.7 0.4 8.8E-06 46.0 6.4 36 176-211 3-39 (322)
404 KOG4230 C1-tetrahydrofolate sy 91.7 2.4 5.2E-05 44.4 11.8 137 172-360 157-294 (935)
405 PLN02178 cinnamyl-alcohol dehy 91.7 0.38 8.2E-06 48.0 6.2 35 176-210 178-212 (375)
406 PRK04523 N-acetylornithine car 91.6 2.4 5.2E-05 41.9 11.7 73 175-256 166-251 (335)
407 PLN02740 Alcohol dehydrogenase 91.6 0.47 1E-05 47.2 6.9 38 175-212 197-235 (381)
408 PRK12828 short chain dehydroge 91.6 0.24 5.1E-06 45.0 4.3 39 174-212 4-43 (239)
409 PRK06182 short chain dehydroge 91.5 1.4 3E-05 41.3 9.7 36 176-211 2-38 (273)
410 PRK07856 short chain dehydroge 91.5 0.28 6E-06 45.4 4.8 37 174-210 3-40 (252)
411 TIGR03201 dearomat_had 6-hydro 91.5 0.38 8.1E-06 47.1 5.9 37 176-212 166-202 (349)
412 PRK03803 murD UDP-N-acetylmura 91.4 0.22 4.9E-06 50.7 4.4 114 176-302 5-133 (448)
413 PRK06196 oxidoreductase; Provi 91.4 0.27 5.9E-06 47.4 4.8 39 173-211 22-61 (315)
414 PLN02214 cinnamoyl-CoA reducta 91.4 0.42 9.2E-06 46.8 6.2 38 174-211 7-45 (342)
415 PF05368 NmrA: NmrA-like famil 91.4 0.11 2.5E-06 47.6 2.0 85 180-272 1-92 (233)
416 PRK04284 ornithine carbamoyltr 91.4 0.54 1.2E-05 46.3 6.9 102 174-284 152-273 (332)
417 TIGR03215 ac_ald_DH_ac acetald 91.3 0.39 8.5E-06 46.3 5.7 67 178-260 2-75 (285)
418 PRK06197 short chain dehydroge 91.3 0.21 4.5E-06 47.9 3.9 48 164-211 3-51 (306)
419 TIGR02818 adh_III_F_hyde S-(hy 91.3 0.46 1E-05 47.0 6.4 37 176-212 185-222 (368)
420 PRK06153 hypothetical protein; 91.2 0.18 4E-06 50.4 3.4 37 173-209 172-209 (393)
421 PRK03515 ornithine carbamoyltr 91.2 0.57 1.2E-05 46.3 6.8 102 174-284 153-274 (336)
422 PRK03806 murD UDP-N-acetylmura 91.2 0.28 6E-06 49.9 4.8 37 174-210 3-39 (438)
423 cd01336 MDH_cytoplasmic_cytoso 91.2 0.5 1.1E-05 46.4 6.4 97 179-286 4-129 (325)
424 cd08255 2-desacetyl-2-hydroxye 91.2 0.29 6.2E-06 45.9 4.5 95 175-288 96-193 (277)
425 PLN02695 GDP-D-mannose-3',5'-e 91.2 0.37 8E-06 47.9 5.5 35 176-210 20-55 (370)
426 cd01338 MDH_choloroplast_like 91.1 0.41 9E-06 47.0 5.7 106 178-296 3-137 (322)
427 PRK12771 putative glutamate sy 91.1 0.36 7.9E-06 50.8 5.7 45 166-210 126-170 (564)
428 TIGR01142 purT phosphoribosylg 91.1 0.32 6.9E-06 48.3 5.0 34 179-212 1-34 (380)
429 cd00704 MDH Malate dehydrogena 91.0 0.53 1.1E-05 46.2 6.4 103 179-296 2-135 (323)
430 KOG0399 Glutamate synthase [Am 91.0 0.95 2.1E-05 50.8 8.6 84 172-260 1780-1881(2142)
431 PF05222 AlaDh_PNT_N: Alanine 91.0 1.1 2.3E-05 38.4 7.4 100 191-314 18-119 (136)
432 TIGR03316 ygeW probable carbam 90.9 0.66 1.4E-05 46.2 6.9 74 174-256 167-252 (357)
433 KOG1502 Flavonol reductase/cin 90.9 0.47 1E-05 46.5 5.8 80 176-256 5-85 (327)
434 PRK07890 short chain dehydroge 90.9 0.66 1.4E-05 42.8 6.7 37 175-211 3-40 (258)
435 PRK08217 fabG 3-ketoacyl-(acyl 90.9 0.29 6.3E-06 44.9 4.2 38 174-211 2-40 (253)
436 PLN02427 UDP-apiose/xylose syn 90.8 0.47 1E-05 47.2 5.9 40 171-210 8-49 (386)
437 PLN02272 glyceraldehyde-3-phos 90.8 0.24 5.1E-06 50.2 3.7 30 178-207 86-116 (421)
438 cd05290 LDH_3 A subgroup of L- 90.7 0.23 5.1E-06 48.3 3.6 103 179-286 1-120 (307)
439 cd08301 alcohol_DH_plants Plan 90.7 0.63 1.4E-05 45.9 6.7 37 176-212 187-224 (369)
440 PRK08703 short chain dehydroge 90.7 0.33 7.1E-06 44.5 4.4 39 173-211 2-41 (239)
441 PRK01368 murD UDP-N-acetylmura 90.7 0.35 7.6E-06 49.7 5.0 113 175-302 4-129 (454)
442 PLN02657 3,8-divinyl protochlo 90.7 0.4 8.6E-06 48.2 5.3 40 172-211 55-95 (390)
443 TIGR01759 MalateDH-SF1 malate 90.7 0.57 1.2E-05 46.0 6.2 110 178-294 4-136 (323)
444 PRK08300 acetaldehyde dehydrog 90.6 0.49 1.1E-05 46.0 5.6 98 177-295 4-118 (302)
445 TIGR03466 HpnA hopanoid-associ 90.6 0.46 1E-05 45.4 5.5 71 178-258 1-73 (328)
446 PRK07825 short chain dehydroge 90.6 0.37 8E-06 45.2 4.7 38 174-211 2-40 (273)
447 PRK06523 short chain dehydroge 90.5 0.35 7.6E-06 44.8 4.5 39 173-211 5-44 (260)
448 TIGR00036 dapB dihydrodipicoli 90.5 0.8 1.7E-05 43.6 6.9 69 178-258 2-77 (266)
449 PF00044 Gp_dh_N: Glyceraldehy 90.5 0.25 5.4E-06 43.1 3.2 30 179-208 2-32 (151)
450 PRK15116 sulfur acceptor prote 90.4 0.16 3.6E-06 48.5 2.1 43 167-209 20-63 (268)
451 cd05283 CAD1 Cinnamyl alcohol 90.4 0.52 1.1E-05 45.8 5.7 96 176-286 169-264 (337)
452 PLN02514 cinnamyl-alcohol dehy 90.3 0.55 1.2E-05 46.3 5.8 95 175-286 179-276 (357)
453 PTZ00245 ubiquitin activating 90.3 0.29 6.3E-06 46.4 3.6 51 158-210 9-60 (287)
454 PF00289 CPSase_L_chain: Carba 90.2 0.67 1.5E-05 38.2 5.4 98 178-306 3-102 (110)
455 cd08296 CAD_like Cinnamyl alco 90.2 0.89 1.9E-05 44.0 7.1 36 176-211 163-198 (333)
456 COG0677 WecC UDP-N-acetyl-D-ma 90.2 2.8 6E-05 42.2 10.5 93 171-284 316-419 (436)
457 PRK13376 pyrB bifunctional asp 90.2 0.93 2E-05 47.4 7.5 99 174-285 171-293 (525)
458 PRK06179 short chain dehydroge 90.2 0.43 9.3E-06 44.6 4.7 37 176-212 3-40 (270)
459 PRK12562 ornithine carbamoyltr 90.1 1 2.3E-05 44.4 7.5 102 174-284 153-274 (334)
460 cd08293 PTGR2 Prostaglandin re 90.1 0.59 1.3E-05 45.3 5.8 93 177-285 155-254 (345)
461 PRK07889 enoyl-(acyl carrier p 90.0 0.8 1.7E-05 42.8 6.4 37 174-210 4-43 (256)
462 PLN02989 cinnamyl-alcohol dehy 90.0 0.7 1.5E-05 44.6 6.2 36 176-211 4-40 (325)
463 PRK08664 aspartate-semialdehyd 90.0 0.92 2E-05 44.9 7.1 31 178-208 4-36 (349)
464 cd01337 MDH_glyoxysomal_mitoch 90.0 0.65 1.4E-05 45.4 5.9 103 178-287 1-119 (310)
465 TIGR02825 B4_12hDH leukotriene 90.0 0.48 1E-05 45.7 5.0 95 176-286 138-238 (325)
466 cd00755 YgdL_like Family of ac 90.0 0.28 6E-06 45.9 3.2 38 173-210 7-45 (231)
467 PRK08040 putative semialdehyde 90.0 0.56 1.2E-05 46.3 5.5 89 176-285 3-97 (336)
468 PRK06057 short chain dehydroge 89.9 0.39 8.5E-06 44.5 4.3 38 174-211 4-42 (255)
469 PLN03154 putative allyl alcoho 89.9 0.55 1.2E-05 46.2 5.4 36 176-211 158-194 (348)
470 PRK10537 voltage-gated potassi 89.9 1.6 3.6E-05 44.0 8.9 33 177-209 240-272 (393)
471 TIGR01832 kduD 2-deoxy-D-gluco 89.8 0.41 9E-06 44.0 4.3 37 174-210 2-39 (248)
472 TIGR01758 MDH_euk_cyt malate d 89.8 0.68 1.5E-05 45.5 5.9 103 179-294 1-132 (324)
473 PRK06841 short chain dehydroge 89.7 0.42 9.1E-06 44.1 4.3 38 174-211 12-50 (255)
474 TIGR01087 murD UDP-N-acetylmur 89.7 0.35 7.7E-06 49.0 4.0 116 179-303 1-128 (433)
475 PRK06398 aldose dehydrogenase; 89.6 0.47 1E-05 44.3 4.5 38 174-211 3-41 (258)
476 PRK05786 fabG 3-ketoacyl-(acyl 89.5 0.43 9.3E-06 43.5 4.1 38 174-211 2-40 (238)
477 cd08245 CAD Cinnamyl alcohol d 89.5 0.51 1.1E-05 45.4 4.8 97 175-286 161-257 (330)
478 PRK07774 short chain dehydroge 89.5 0.46 9.9E-06 43.7 4.3 38 174-211 3-41 (250)
479 PRK12826 3-ketoacyl-(acyl-carr 89.5 0.45 9.8E-06 43.5 4.2 39 173-211 2-41 (251)
480 PF03447 NAD_binding_3: Homose 89.3 0.14 3.1E-06 42.1 0.7 102 184-304 1-112 (117)
481 PRK07576 short chain dehydroge 89.3 0.47 1E-05 44.4 4.3 39 173-211 5-44 (264)
482 PRK07200 aspartate/ornithine c 89.3 1 2.2E-05 45.4 6.9 74 174-256 184-269 (395)
483 PRK06139 short chain dehydroge 89.1 0.81 1.8E-05 44.9 6.0 39 173-211 3-42 (330)
484 cd01491 Ube1_repeat1 Ubiquitin 89.1 0.24 5.1E-06 47.8 2.1 44 167-210 9-53 (286)
485 PLN02827 Alcohol dehydrogenase 89.1 0.98 2.1E-05 45.0 6.6 37 175-211 192-229 (378)
486 TIGR01381 E1_like_apg7 E1-like 89.1 0.36 7.8E-06 51.3 3.6 61 136-209 307-371 (664)
487 PRK06728 aspartate-semialdehyd 89.1 1.1 2.4E-05 44.4 6.8 88 177-285 5-99 (347)
488 PRK05717 oxidoreductase; Valid 89.0 0.54 1.2E-05 43.6 4.5 39 173-211 6-45 (255)
489 PRK06172 short chain dehydroge 89.0 0.44 9.4E-06 44.0 3.8 38 174-211 4-42 (253)
490 COG0540 PyrB Aspartate carbamo 89.0 0.65 1.4E-05 45.0 5.0 70 175-256 156-231 (316)
491 TIGR01296 asd_B aspartate-semi 89.0 0.44 9.5E-06 47.1 3.9 88 179-285 1-92 (339)
492 cd08233 butanediol_DH_like (2R 88.9 1.3 2.8E-05 43.2 7.3 95 176-286 172-273 (351)
493 PRK07831 short chain dehydroge 88.9 0.44 9.4E-06 44.4 3.7 38 174-211 14-53 (262)
494 PLN00112 malate dehydrogenase 88.8 1.3 2.8E-05 45.4 7.3 110 178-302 101-241 (444)
495 cd08295 double_bond_reductase_ 88.8 0.73 1.6E-05 44.7 5.4 36 176-211 151-187 (338)
496 COG0057 GapA Glyceraldehyde-3- 88.7 0.41 8.8E-06 46.8 3.4 31 178-208 2-34 (335)
497 cd08234 threonine_DH_like L-th 88.6 0.45 9.8E-06 45.8 3.7 98 175-288 158-260 (334)
498 PRK09186 flagellin modificatio 88.6 0.49 1.1E-05 43.7 3.8 37 175-211 2-39 (256)
499 PRK08862 short chain dehydroge 88.5 0.5 1.1E-05 43.6 3.8 39 174-212 2-41 (227)
500 PRK08339 short chain dehydroge 88.5 0.58 1.2E-05 43.9 4.3 38 174-211 5-43 (263)
No 1
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=3.1e-73 Score=557.98 Aligned_cols=338 Identities=72% Similarity=1.160 Sum_probs=293.4
Q ss_pred ccCCCCCCccEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEe
Q 017490 28 MARSSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQF 107 (370)
Q Consensus 28 ~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~ 107 (370)
--++|++.++||+++++.++....+.+++++..+...+...+.+++.+.+.++|+++.+..++++++++.+|+||||++.
T Consensus 10 ~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~ 89 (347)
T PLN02928 10 RVHHSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIMQF 89 (347)
T ss_pred hccCCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEEEC
Confidence 34677778889999988766444555666666665555555566778888999998887778999999999999999999
Q ss_pred CcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCc
Q 017490 108 GVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGN 187 (370)
Q Consensus 108 ~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~ 187 (370)
|+|+|++|++++.++||.|+|+||+.++|+.+||||++++||+++|++..+++.++++.|....+.+|.|||+||||+|.
T Consensus 90 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~ 169 (347)
T PLN02928 90 GVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGA 169 (347)
T ss_pred CcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCH
Confidence 99999999999999999999999986668999999999999999999999999999999976667899999999999999
Q ss_pred hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhccc
Q 017490 188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267 (370)
Q Consensus 188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li 267 (370)
||+.+|++|++|||+|++|||++.+..... +.++...........+...++++++++||+|++|+|+|++|+++|
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li 244 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDG-----LLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIV 244 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhh-----hccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhccc
Confidence 999999999999999999999754311000 000000000111112245689999999999999999999999999
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHH
Q 017490 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA 347 (370)
Q Consensus 268 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~ 347 (370)
+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++|||++|||++|||+||+|.++++++.
T Consensus 245 ~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~ 324 (347)
T PLN02928 245 NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMG 324 (347)
T ss_pred CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccccC
Q 017490 348 KVVGDVALQLHAGTPLTGLEFVN 370 (370)
Q Consensus 348 ~~~~~ni~~~~~g~~~~~~~~~~ 370 (370)
+.+++|+.+|++|+++.+++|||
T Consensus 325 ~~~~~nl~~~~~g~~~~~~~~~~ 347 (347)
T PLN02928 325 KIVGDAALQLHAGRPLTGIEFVN 347 (347)
T ss_pred HHHHHHHHHHHCCCCCCceeecC
Confidence 99999999999999999999998
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-72 Score=547.06 Aligned_cols=306 Identities=31% Similarity=0.513 Sum_probs=268.0
Q ss_pred ccEEEEeCCCCCCchhhHHHHHhcCCCceee---eCCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490 36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD---VVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE 112 (370)
Q Consensus 36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 112 (370)
+++++...+..+. ....+... ....+. ..+.+++.+.+.++|+++...+++++++++.+|+||||++.|+|+|
T Consensus 3 ~~~vl~~~~~~~~---~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gvd 78 (324)
T COG0111 3 MIKVLVTDPLAPD---ALEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVD 78 (324)
T ss_pred cceeeccCccCHH---HHHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEcccccc
Confidence 4677777665432 22222222 222221 2334557788899998776779999999999999999999999999
Q ss_pred ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchhH
Q 017490 113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV 190 (370)
Q Consensus 113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG~ 190 (370)
+||+++++++||.|+|+|++ |+.+||||++++||++.|+++.+++.+++|.|.. ..+.+|+||||||||+|.||+
T Consensus 79 ~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~ 155 (324)
T COG0111 79 NIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGR 155 (324)
T ss_pred ccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHH
Confidence 99999999999999999997 8899999999999999999999999999999985 467799999999999999999
Q ss_pred HHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHH
Q 017490 191 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS 270 (370)
Q Consensus 191 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~ 270 (370)
.+|+++++|||+|++||++..+.. ..........+|+++|++||||++|+|+|++|++|||++
T Consensus 156 ~va~~l~afgm~v~~~d~~~~~~~-----------------~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~ 218 (324)
T COG0111 156 AVAKRLKAFGMKVIGYDPYSPRER-----------------AGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAE 218 (324)
T ss_pred HHHHHHHhCCCeEEEECCCCchhh-----------------hccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHH
Confidence 999999999999999999544310 111222245789999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHH
Q 017490 271 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 350 (370)
Q Consensus 271 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~ 350 (370)
.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|++||||++|||++|||+||+|.+++.++.+.+
T Consensus 219 ~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~ 298 (324)
T COG0111 219 ELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIV 298 (324)
T ss_pred HHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCC
Q 017490 351 GDVALQLHAGTPLTG 365 (370)
Q Consensus 351 ~~ni~~~~~g~~~~~ 365 (370)
++|+.+|++|.++.|
T Consensus 299 ~~~i~~~l~g~~~~~ 313 (324)
T COG0111 299 AENIVRYLAGGPVVN 313 (324)
T ss_pred HHHHHHHHcCCCCCC
Confidence 999999999998644
No 3
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=3e-71 Score=538.77 Aligned_cols=304 Identities=20% Similarity=0.306 Sum_probs=264.9
Q ss_pred cEEEEeCCCCCCchhhHHHHHhcCCCceeee-C---CCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490 37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-V---PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE 112 (370)
Q Consensus 37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 112 (370)
|+|+++.+..+ .. .+.++...++.... . +.+++.+.+.++|+++.+..++++++++++|+||||++.|+|+|
T Consensus 3 ~~vl~~~~~~~---~~-~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~d 78 (323)
T PRK15409 3 PSVILYKALPD---DL-LQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGYD 78 (323)
T ss_pred ceEEEeCCCCH---HH-HHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceecc
Confidence 68999987532 22 23343322222211 1 12345677889999887767899999999999999999999999
Q ss_pred ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC-----CcccccCceEEEEecCc
Q 017490 113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFILGFGN 187 (370)
Q Consensus 113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~-----~~~~l~g~tvGIiGlG~ 187 (370)
+||+++|+++||.|+|+||+ |+.+||||++++||+++|++..+++.+++|.|... .+.+|+||||||||+|+
T Consensus 79 ~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~ 155 (323)
T PRK15409 79 NFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGR 155 (323)
T ss_pred cccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccH
Confidence 99999999999999999998 78999999999999999999999999999999632 47799999999999999
Q ss_pred hhHHHHHHhc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490 188 IGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAG 265 (370)
Q Consensus 188 IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~ 265 (370)
||+.+|++++ +|||+|++||++..... ....+ .+.++++++++||+|++|+|+|++|++
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~~~-------------------~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~ 216 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHKEA-------------------EERFNARYCDLDTLLQESDFVCIILPLTDETHH 216 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhh-------------------HHhcCcEecCHHHHHHhCCEEEEeCCCChHHhh
Confidence 9999999998 99999999998743210 01111 346899999999999999999999999
Q ss_pred ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHH
Q 017490 266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRS 345 (370)
Q Consensus 266 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~ 345 (370)
+||++.|++||||++|||+|||++||++||++||++|+|+||+||||++||+|.++|||++|||++|||+||.|.+++.+
T Consensus 217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~ 296 (323)
T PRK15409 217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN 296 (323)
T ss_pred ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCc
Q 017490 346 MAKVVGDVALQLHAGTPLTGL 366 (370)
Q Consensus 346 ~~~~~~~ni~~~~~g~~~~~~ 366 (370)
+.+.+++|+.+|++|+++.+.
T Consensus 297 ~~~~~~~ni~~~~~g~~~~~~ 317 (323)
T PRK15409 297 MAACAVDNLIDALQGKVEKNC 317 (323)
T ss_pred HHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999987654
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.7e-70 Score=528.71 Aligned_cols=301 Identities=26% Similarity=0.390 Sum_probs=262.1
Q ss_pred cEEEEeCCCC-CCchhhHHHHH-hcCCCceeee-CCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCc
Q 017490 37 TRVLFCGPHF-PASHNYTKEYL-QNYPSIQVDV-VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEG 113 (370)
Q Consensus 37 ~~vl~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 113 (370)
|||+++.... +.... ..+.+ +.++.+.+.. .+.+++.+.+.++|+++.+..++++++++++|+||||++.|+|+|+
T Consensus 1 m~i~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 1 MRAVFLDHDSLDLGDL-DLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNN 79 (317)
T ss_pred CeEEEEccccCCcccc-chhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCccccc
Confidence 3677775531 11111 12233 2344544432 2345677888999988877778999999999999999999999999
Q ss_pred cchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--------CcccccCceEEEEec
Q 017490 114 VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGF 185 (370)
Q Consensus 114 id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvGIiGl 185 (370)
||++++.++||.|+|+||+ |+.+||||++++||+++|++..+++.+++|.|... .+++|.||||||||+
T Consensus 80 id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~ 156 (317)
T PRK06487 80 VDLAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGH 156 (317)
T ss_pred cCHHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECC
Confidence 9999999999999999998 77999999999999999999999999999999632 246899999999999
Q ss_pred CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490 186 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 265 (370)
Q Consensus 186 G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~ 265 (370)
|.||+++|+++++|||+|++||++.... .. ...++++++++||+|++|+|+|++|++
T Consensus 157 G~IG~~vA~~l~~fgm~V~~~~~~~~~~-------------------~~----~~~~l~ell~~sDiv~l~lPlt~~T~~ 213 (317)
T PRK06487 157 GELGGAVARLAEAFGMRVLIGQLPGRPA-------------------RP----DRLPLDELLPQVDALTLHCPLTEHTRH 213 (317)
T ss_pred CHHHHHHHHHHhhCCCEEEEECCCCCcc-------------------cc----cccCHHHHHHhCCEEEECCCCChHHhc
Confidence 9999999999999999999999863220 01 235899999999999999999999999
Q ss_pred ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccC--CCceEEccCCCCccHHHH
Q 017490 266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILK--FKNVLITPHVGGVTEHSY 343 (370)
Q Consensus 266 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~--~~nvilTPHia~~t~~~~ 343 (370)
+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++++|||+ +|||++|||+||+|.++.
T Consensus 214 li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~ 293 (317)
T PRK06487 214 LIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREAR 293 (317)
T ss_pred CcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999995 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 017490 344 RSMAKVVGDVALQLHAGTPLT 364 (370)
Q Consensus 344 ~~~~~~~~~ni~~~~~g~~~~ 364 (370)
+++.+.+++|+++|++|+++.
T Consensus 294 ~~~~~~~~~ni~~~~~g~~~~ 314 (317)
T PRK06487 294 QRIVGQLAENARAFFAGKPLR 314 (317)
T ss_pred HHHHHHHHHHHHHHHcCCCCc
Confidence 999999999999999998764
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=8.5e-70 Score=526.69 Aligned_cols=299 Identities=22% Similarity=0.378 Sum_probs=259.4
Q ss_pred cEEEEeCCCCCCchhhHHHHHhcCCCceeee-CCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccc
Q 017490 37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-VPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVD 115 (370)
Q Consensus 37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 115 (370)
|||+++.+.... .. ..+.++....+.... .+.+++.+.+.++|+++.+..++++++++++|+||||++.|+|+|+||
T Consensus 1 mki~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 78 (311)
T PRK08410 1 MKIVILDAKTLG-DK-DLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVD 78 (311)
T ss_pred CeEEEEecCCCC-hh-hHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEccccccccc
Confidence 467777653211 11 123343332222221 224567778899999887777999999999999999999999999999
Q ss_pred hhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--------CcccccCceEEEEecCc
Q 017490 116 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGN 187 (370)
Q Consensus 116 ~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvGIiGlG~ 187 (370)
+++|+++||.|+|+||+ |+.+||||++++||+++|++..+++.+++|.|... .+++|.||||||||+|+
T Consensus 79 ~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~ 155 (311)
T PRK08410 79 IEYAKKKGIAVKNVAGY---STESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGT 155 (311)
T ss_pred HHHHHhCCCEEEcCCCC---CChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCH
Confidence 99999999999999998 78999999999999999999999999999999632 24789999999999999
Q ss_pred hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhccc
Q 017490 188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIV 267 (370)
Q Consensus 188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li 267 (370)
||+++|+++++|||+|++|||+.... .. ...+.++++++++||+|++|+|+|++|+++|
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~-----------------~~----~~~~~~l~ell~~sDvv~lh~Plt~~T~~li 214 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK-----------------NE----EYERVSLEELLKTSDIISIHAPLNEKTKNLI 214 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc-----------------cc----CceeecHHHHhhcCCEEEEeCCCCchhhccc
Confidence 99999999999999999999864321 00 0124689999999999999999999999999
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCC---CceEEccCCCCccHHHHH
Q 017490 268 NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF---KNVLITPHVGGVTEHSYR 344 (370)
Q Consensus 268 ~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~---~nvilTPHia~~t~~~~~ 344 (370)
|++.|++||||++|||+|||++||++||++||++|+|+ |+||||++||+++++|||++ |||++|||+||+|.++..
T Consensus 215 ~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~ 293 (311)
T PRK08410 215 AYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARK 293 (311)
T ss_pred CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHH
Confidence 99999999999999999999999999999999999999 99999999999999999987 899999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 017490 345 SMAKVVGDVALQLHAGTP 362 (370)
Q Consensus 345 ~~~~~~~~ni~~~~~g~~ 362 (370)
++.+.+++|+.+|++|++
T Consensus 294 ~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 294 TLIEKVKENIKDFLEGGK 311 (311)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999999864
No 6
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-69 Score=523.47 Aligned_cols=269 Identities=21% Similarity=0.332 Sum_probs=248.0
Q ss_pred CCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHH
Q 017490 69 PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148 (370)
Q Consensus 69 ~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~ 148 (370)
+++++.+.+.++|+++....++++++++++|+||||++.|+|+|+||+++|.++||.|+|+||+ |+.+||||++++|
T Consensus 34 ~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~ 110 (314)
T PRK06932 34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMI 110 (314)
T ss_pred ChHHHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHH
Confidence 3566778889999888777789999999999999999999999999999999999999999998 7799999999999
Q ss_pred HHHHHhHHHHHHHHHhcccCCC--------CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccccc
Q 017490 149 LGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS 220 (370)
Q Consensus 149 L~~~R~~~~~~~~~~~~~~~~~--------~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~ 220 (370)
|+++|++..+++.++++.|... .+++|+||||||||+|.||+++|+++++|||+|++||+....
T Consensus 111 l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-------- 182 (314)
T PRK06932 111 FALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-------- 182 (314)
T ss_pred HHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--------
Confidence 9999999999999999999632 357899999999999999999999999999999999975321
Q ss_pred chhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 221 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
.. . ..+.++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus 183 -----------~~-~--~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 183 -----------VC-R--EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred -----------cc-c--cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 00 0 124689999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEEEecCCCCCCCCCCccc----CCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCC
Q 017490 301 CGHLGGLGIDVAWTEPFDPNDPIL----KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTP 362 (370)
Q Consensus 301 ~g~i~ga~lDV~~~EPl~~~~pL~----~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~ 362 (370)
+|+|+||+||||++||+++++||| ++|||++|||+||+|.++.+++.+.+++|+.+|++|++
T Consensus 249 ~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 249 NGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred cCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999 49999999999999999999999999999999998753
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=3.2e-68 Score=515.80 Aligned_cols=273 Identities=30% Similarity=0.473 Sum_probs=251.4
Q ss_pred ChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHH
Q 017490 72 DVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 150 (370)
Q Consensus 72 ~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~ 150 (370)
++.+..+++|++++. ..++++++++++|+||+|+..|+||||||+++|+++||.|+|+|++ ++.+||||++++||+
T Consensus 37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa 113 (324)
T COG1052 37 ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILA 113 (324)
T ss_pred HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHH
Confidence 346778899988776 7899999999999999999999999999999999999999999999 568999999999999
Q ss_pred HHHhHHHHHHHHHhcccCC------CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhh
Q 017490 151 LLRKQNEMRMAIEQKKLGV------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA 224 (370)
Q Consensus 151 ~~R~~~~~~~~~~~~~~~~------~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~ 224 (370)
+.|++...++.+|+|.|.. ..+.+++|||+||||+|+||+++|+++++|||+|++|||++.+.
T Consensus 114 ~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~----------- 182 (324)
T COG1052 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPE----------- 182 (324)
T ss_pred HhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChH-----------
Confidence 9999999999999999864 45789999999999999999999999999999999999986521
Q ss_pred hcccccccccccc-CCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490 225 VKNGIIDDLVDEK-GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 303 (370)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~ 303 (370)
...+. ..+.++++++++||+|++|||+|++|++|||++.|++||+|++|||+|||++||++||++||++|+
T Consensus 183 --------~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~ 254 (324)
T COG1052 183 --------AEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGK 254 (324)
T ss_pred --------HHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC
Confidence 00111 134569999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCCCCCcccCCCc---eEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490 304 LGGLGIDVAWTEPFDPNDPILKFKN---VLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366 (370)
Q Consensus 304 i~ga~lDV~~~EPl~~~~pL~~~~n---vilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 366 (370)
|+|||||||+.||.+.++||+.++| |++|||+|++|.+++.+|++.+++|+..|++|+++.+.
T Consensus 255 i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~ 320 (324)
T COG1052 255 IAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNE 320 (324)
T ss_pred cceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999878999998888 99999999999999999999999999999999888764
No 8
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1.2e-67 Score=516.21 Aligned_cols=273 Identities=28% Similarity=0.465 Sum_probs=250.1
Q ss_pred CChhhhcCcceEEEEeC-CCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHH
Q 017490 71 SDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149 (370)
Q Consensus 71 ~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L 149 (370)
+++.+.++++|+++++. .++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+ |+.+||||++++||
T Consensus 37 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L 113 (333)
T PRK13243 37 EVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLL 113 (333)
T ss_pred HHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccccccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHH
Confidence 44667789999887753 589999999999999999999999999999999999999999998 78999999999999
Q ss_pred HHHHhHHHHHHHHHhcccCCC---------CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccccc
Q 017490 150 GLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS 220 (370)
Q Consensus 150 ~~~R~~~~~~~~~~~~~~~~~---------~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~ 220 (370)
+++|++..+++.+++|.|... .+.+|+||||||||+|.||+.+|++|++|||+|++|||+.....
T Consensus 114 ~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~------ 187 (333)
T PRK13243 114 ATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA------ 187 (333)
T ss_pred HHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh------
Confidence 999999999999999999631 36799999999999999999999999999999999999754310
Q ss_pred chhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 017490 221 SALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYL 299 (370)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL 299 (370)
....+ ...++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|
T Consensus 188 -------------~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL 254 (333)
T PRK13243 188 -------------EKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKAL 254 (333)
T ss_pred -------------HHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHH
Confidence 00111 2458999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490 300 ECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366 (370)
Q Consensus 300 ~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 366 (370)
++|+|+||+||||++||++ ++|||++|||++|||+||+|.++..++.+.+++|+.+|++|+++.|+
T Consensus 255 ~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~ 320 (333)
T PRK13243 255 KEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTL 320 (333)
T ss_pred HcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999987 89999999999999999999999999999999999999999987654
No 9
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-66 Score=514.48 Aligned_cols=278 Identities=31% Similarity=0.463 Sum_probs=253.8
Q ss_pred CChhhhcCcceEEEEeC---CCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHH
Q 017490 71 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147 (370)
Q Consensus 71 ~~~~~~~~~~d~~i~~~---~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~ 147 (370)
+++.+.+.++|++|... .++++++|+++|+||||++.|+|+|+||+++|.++||.|+|+||+ |+.+||||++++
T Consensus 89 ~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~l 165 (386)
T PLN03139 89 CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMR 165 (386)
T ss_pred HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHH
Confidence 45677889999988753 369999999999999999999999999999999999999999998 889999999999
Q ss_pred HHHHHHhHHHHHHHHHhcccCC----CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchh
Q 017490 148 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 223 (370)
Q Consensus 148 ~L~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~ 223 (370)
||+++|++..+++.+++|.|.. ..+++|.||||||||+|+||+.+|++|++|||+|++||++..+.
T Consensus 166 iL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~---------- 235 (386)
T PLN03139 166 ILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDP---------- 235 (386)
T ss_pred HHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcch----------
Confidence 9999999999999999999963 24689999999999999999999999999999999999875331
Q ss_pred hhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490 224 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301 (370)
Q Consensus 224 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 301 (370)
+.....+ ...++++++++||+|++|+|++++|+++||++.|++||+|++|||+|||++||++||+++|++
T Consensus 236 --------~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 307 (386)
T PLN03139 236 --------ELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS 307 (386)
T ss_pred --------hhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc
Confidence 0111111 235899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 017490 302 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFV 369 (370)
Q Consensus 302 g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~~~~ 369 (370)
|+|+||+||||++||+|+++|||++|||++|||+||.|.+++.++++.+++|+.+|++|+++...++|
T Consensus 308 G~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~~~~i 375 (386)
T PLN03139 308 GHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPAQNYI 375 (386)
T ss_pred CCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999987666554
No 10
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-66 Score=518.64 Aligned_cols=306 Identities=25% Similarity=0.344 Sum_probs=264.0
Q ss_pred CCCccEEEEeCCCCCCchhhHHHHHhcCCCc-eeee----CCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEE
Q 017490 33 DKNITRVLFCGPHFPASHNYTKEYLQNYPSI-QVDV----VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQ 106 (370)
Q Consensus 33 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~ 106 (370)
++.||||+++.+..+ .. .+.++.. ++ ++.. .+++++.+.+.++|+++.+ ..++++++++++|+||||++
T Consensus 7 ~~~~~~ili~~~~~~---~~-~~~l~~~-~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~ 81 (409)
T PRK11790 7 PKDKIKFLLLEGVHQ---SA-VEVLRAA-GYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGC 81 (409)
T ss_pred CCCCeEEEEECCCCH---HH-HHHHHhc-CCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEE
Confidence 445689999875432 22 2334332 22 3322 2345667788899987654 46899999999999999999
Q ss_pred eCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC--CcccccCceEEEEe
Q 017490 107 FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILG 184 (370)
Q Consensus 107 ~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~--~~~~l~g~tvGIiG 184 (370)
.|+|+|+||+++|+++||.|+|+||+ |+.+||||++++||+++|++..+++.+++|.|... .+.+|.||||||||
T Consensus 82 ~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG 158 (409)
T PRK11790 82 FCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVG 158 (409)
T ss_pred CceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEEC
Confidence 99999999999999999999999998 78999999999999999999999999999999743 47899999999999
Q ss_pred cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhh
Q 017490 185 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264 (370)
Q Consensus 185 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~ 264 (370)
+|+||+.+|+++++|||+|++||++.... .... ....++++++++||+|++|+|+|++|+
T Consensus 159 ~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----------------~~~~---~~~~~l~ell~~sDiVslh~Plt~~T~ 218 (409)
T PRK11790 159 YGHIGTQLSVLAESLGMRVYFYDIEDKLP-----------------LGNA---RQVGSLEELLAQSDVVSLHVPETPSTK 218 (409)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCcccc-----------------cCCc---eecCCHHHHHhhCCEEEEcCCCChHHh
Confidence 99999999999999999999999863220 0001 023589999999999999999999999
Q ss_pred cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCC----CCcccCCCceEEccCCCCccH
Q 017490 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP----NDPILKFKNVLITPHVGGVTE 340 (370)
Q Consensus 265 ~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~----~~pL~~~~nvilTPHia~~t~ 340 (370)
++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. ++|||++|||++|||+||+|.
T Consensus 219 ~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ 298 (409)
T PRK11790 219 NMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQ 298 (409)
T ss_pred hccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999876 479999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490 341 HSYRSMAKVVGDVALQLHAGTPLTGL 366 (370)
Q Consensus 341 ~~~~~~~~~~~~ni~~~~~g~~~~~~ 366 (370)
++..++.+.+++|+.+|++|+++.+.
T Consensus 299 ea~~~~~~~~~~nl~~~~~~~~~~~~ 324 (409)
T PRK11790 299 EAQENIGLEVAGKLVKYSDNGSTLSA 324 (409)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence 99999999999999999998877543
No 11
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-66 Score=512.09 Aligned_cols=278 Identities=30% Similarity=0.457 Sum_probs=254.4
Q ss_pred CChhhhcCcceEEEEe---CCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHH
Q 017490 71 SDVPDVIANYHLCVVK---TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147 (370)
Q Consensus 71 ~~~~~~~~~~d~~i~~---~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~ 147 (370)
+++.+.+.++|++|.. ..++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+ |+.+||||++++
T Consensus 82 ~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l 158 (385)
T PRK07574 82 SDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMM 158 (385)
T ss_pred HHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHH
Confidence 4567788999998874 2579999999999999999999999999999999999999999997 889999999999
Q ss_pred HHHHHHhHHHHHHHHHhcccCCC----CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchh
Q 017490 148 MLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 223 (370)
Q Consensus 148 ~L~~~R~~~~~~~~~~~~~~~~~----~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~ 223 (370)
||+++|++..+++.+++|.|... .+.+|.|++|||||+|+||+.+|++|++|||+|++|||+..+..
T Consensus 159 ~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~--------- 229 (385)
T PRK07574 159 ILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEE--------- 229 (385)
T ss_pred HHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchh---------
Confidence 99999999999999999999642 46789999999999999999999999999999999999753210
Q ss_pred hhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490 224 AVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301 (370)
Q Consensus 224 ~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 301 (370)
.....+ ...++++++++||+|++|+|++++|+++||++.|++||+|++|||+|||+++|++||++||++
T Consensus 230 ---------~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 230 ---------VEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ---------hHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 001111 246899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 017490 302 GHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGLEFV 369 (370)
Q Consensus 302 g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~~~~ 369 (370)
|+|+||+||||++||+|+++|||++|||++|||+||+|.++++++.+.+++|+++|++|+++.|..++
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~~~~ 368 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDEYLI 368 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999876543
No 12
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=1.1e-64 Score=502.09 Aligned_cols=322 Identities=24% Similarity=0.306 Sum_probs=262.2
Q ss_pred CCCCccEEEEeCCCCCCchhhHHHHHhcCCCceeee-------CCCCChhhhc-CcceEEEEe-CCCCCHHHHhcCCC--
Q 017490 32 SDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-------VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQ-- 100 (370)
Q Consensus 32 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~d~~i~~-~~~~~~~~l~~~~~-- 100 (370)
+++-+++|+++.+..+. .. .+.++.. ++++.. .+.+++.+.+ .++|+++++ ..++++++++++|+
T Consensus 11 ~~~~~~~v~~~~~~~~~--~~-~~~L~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~ 86 (386)
T PLN02306 11 NPNGKYRVVSTKPMPGT--RW-INLLVDQ-DCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAG 86 (386)
T ss_pred CCCCCceEEEeCCCCcH--HH-HHHHHhc-CceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCC
Confidence 45567899998764321 11 2333332 223221 2345566666 469987765 46899999999995
Q ss_pred CeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC-----CCcccc
Q 017490 101 MKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETL 175 (370)
Q Consensus 101 Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~-----~~~~~l 175 (370)
||+|++.|+|+|+||+++|+++||.|+|+||+ |+.+||||++++||+++|++..+++.+++|.|.. ..+.+|
T Consensus 87 lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L 163 (386)
T PLN02306 87 GKAFSNMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLL 163 (386)
T ss_pred ceEEEECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCC
Confidence 69999999999999999999999999999998 7899999999999999999999999999988742 246899
Q ss_pred cCceEEEEecCchhHHHHHHhc-cCCCEEEEEcCCCccccccccccchhhhcccccc-ccccccC--CCCCHHHHHhcCC
Q 017490 176 LGKTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-DLVDEKG--CHEDIFEFASKAD 251 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~l~ell~~aD 251 (370)
.||||||||+|.||+.+|++++ +|||+|++||++.......... .+ ..... ....... ...++++++++||
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~--~~---~~~l~~~~~~~~~~~~~~~L~ell~~sD 238 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVT--AY---GQFLKANGEQPVTWKRASSMEEVLREAD 238 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhh--hh---cccccccccccccccccCCHHHHHhhCC
Confidence 9999999999999999999985 9999999999875421000000 00 00000 0000000 1258999999999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEE
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLI 331 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvil 331 (370)
+|++|+|+|++|++|||++.|++||+|++|||+|||++||++||++||++|+++||+||||++||+ +++|||++|||++
T Consensus 239 iV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~-~~~~L~~~pNVil 317 (386)
T PLN02306 239 VISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLADMKNAVV 317 (386)
T ss_pred EEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCC-CcchHhhCCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999997 4679999999999
Q ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490 332 TPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366 (370)
Q Consensus 332 TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 366 (370)
|||+||+|.++.+++.+.+++|+.+|++|+++.|.
T Consensus 318 TPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~ 352 (386)
T PLN02306 318 VPHIASASKWTREGMATLAALNVLGKLKGYPVWGD 352 (386)
T ss_pred CCccccCcHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 99999999999999999999999999999988654
No 13
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=5e-64 Score=489.70 Aligned_cols=306 Identities=20% Similarity=0.318 Sum_probs=267.3
Q ss_pred ccEEEEeCCCCCCchhhHHHHHhcCCCceeeeCC---CCChhhhcCcceEEEEe-CCCCCHHHHhcCC--CCeEEEEeCc
Q 017490 36 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGV 109 (370)
Q Consensus 36 ~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~--~Lk~I~~~~~ 109 (370)
||||++++.. +.+.++..++++.+ ++++...+ .++..+.+.++|++++. ..++++++++++| +||+|++.|+
T Consensus 1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~ 78 (330)
T PRK12480 1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA 78 (330)
T ss_pred CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence 4899999875 55567777777665 55554322 23457788899988775 4689999999997 8999999999
Q ss_pred ccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccC--C-CCcccccCceEEEEecC
Q 017490 110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--V-PTGETLLGKTVFILGFG 186 (370)
Q Consensus 110 G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~--~-~~~~~l~g~tvGIiGlG 186 (370)
|+|+||+++|+++||.|+|+||+ |+.+||||++++||+++|++..+++.++++.|. . ..+++|+|++|||||+|
T Consensus 79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G 155 (330)
T PRK12480 79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG 155 (330)
T ss_pred ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence 99999999999999999999998 779999999999999999999999999998653 2 35789999999999999
Q ss_pred chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcc
Q 017490 187 NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI 266 (370)
Q Consensus 187 ~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~l 266 (370)
.||+.+|++|+++||+|++||++.... .... + ...++++++++||+|++|+|++++|+++
T Consensus 156 ~IG~~vA~~L~~~G~~V~~~d~~~~~~-----------------~~~~-~--~~~~l~ell~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 156 RIGAATAKIYAGFGATITAYDAYPNKD-----------------LDFL-T--YKDSVKEAIKDADIISLHVPANKESYHL 215 (330)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChhHh-----------------hhhh-h--ccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence 999999999999999999999875431 0010 1 1247999999999999999999999999
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCC-------------CCCcccCCCceEEcc
Q 017490 267 VNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-------------PNDPILKFKNVLITP 333 (370)
Q Consensus 267 i~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-------------~~~pL~~~~nvilTP 333 (370)
++++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++ ..+|||++|||++||
T Consensus 216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP 295 (330)
T PRK12480 216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP 295 (330)
T ss_pred HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence 9999999999999999999999999999999999999999999999999962 124799999999999
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490 334 HVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366 (370)
Q Consensus 334 Hia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 366 (370)
|+||+|.++.+++.+.+++|+.+|++|++..+.
T Consensus 296 Hia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~ 328 (330)
T PRK12480 296 HIAFFSDEAVQNLVEGGLNAALSVINTGTCETR 328 (330)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 999999999999999999999999999887754
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-64 Score=517.92 Aligned_cols=303 Identities=32% Similarity=0.523 Sum_probs=264.7
Q ss_pred cEEEEeCCCCCCchhhHHHHHhcCCCceeee---CCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccC
Q 017490 37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE 112 (370)
Q Consensus 37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d 112 (370)
|||+++.+..+ .. .+.++..+++++.. .+.+++.+.+.++|+++++ ..++++++++++|+||||++.|+|+|
T Consensus 1 m~ili~~~~~~---~~-~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 76 (526)
T PRK13581 1 MKVLVSDPISP---AG-LEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD 76 (526)
T ss_pred CeEEEeCCCCH---HH-HHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence 47888875432 22 23444434455442 2345677888999988775 46899999999999999999999999
Q ss_pred ccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchhH
Q 017490 113 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV 190 (370)
Q Consensus 113 ~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG~ 190 (370)
+||+++|+++||.|+|+||+ |+.+||||++++||+++|+++.+++.+++|.|.. ..+.+|.||||||||+|.||+
T Consensus 77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~ 153 (526)
T PRK13581 77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS 153 (526)
T ss_pred cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence 99999999999999999998 7899999999999999999999999999999964 357899999999999999999
Q ss_pred HHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCH
Q 017490 191 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNK 269 (370)
Q Consensus 191 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~ 269 (370)
.+|+++++|||+|++|||+..... ....+ ...++++++++||+|++|+|++++|++++++
T Consensus 154 ~vA~~l~~fG~~V~~~d~~~~~~~-------------------~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~ 214 (526)
T PRK13581 154 EVAKRAKAFGMKVIAYDPYISPER-------------------AAQLGVELVSLDELLARADFITLHTPLTPETRGLIGA 214 (526)
T ss_pred HHHHHHHhCCCEEEEECCCCChhH-------------------HHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCH
Confidence 999999999999999998643210 00111 2347999999999999999999999999999
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHH
Q 017490 270 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKV 349 (370)
Q Consensus 270 ~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~ 349 (370)
+.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||+|.+++.++++.
T Consensus 215 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~ 293 (526)
T PRK13581 215 EELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQ 293 (526)
T ss_pred HHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999975 899999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCc
Q 017490 350 VGDVALQLHAGTPLTGL 366 (370)
Q Consensus 350 ~~~ni~~~~~g~~~~~~ 366 (370)
+++|+.+|++|+++.+.
T Consensus 294 ~~~ni~~~~~g~~~~~~ 310 (526)
T PRK13581 294 VAEQVIDALRGGPVPNA 310 (526)
T ss_pred HHHHHHHHHcCCCcCce
Confidence 99999999999987654
No 15
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=9e-64 Score=515.35 Aligned_cols=275 Identities=30% Similarity=0.517 Sum_probs=250.9
Q ss_pred CCCChhhhcCcceEEEEeC-CCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHH
Q 017490 69 PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 147 (370)
Q Consensus 69 ~~~~~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~ 147 (370)
+.+++.+.++++|+++++. .++++++++++|+||||++.|+|+|+||+++|+++||.|+|+||+ |+.+||||++++
T Consensus 30 ~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l 106 (525)
T TIGR01327 30 SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTG---NTISAAEHALAM 106 (525)
T ss_pred CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCc---ChHHHHHHHHHH
Confidence 3566778889999887754 689999999999999999999999999999999999999999998 889999999999
Q ss_pred HHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhh
Q 017490 148 MLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV 225 (370)
Q Consensus 148 ~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~ 225 (370)
||+++|+++.+++.+++|.|.. ..+.+|.||||||||+|.||+++|++|++|||+|++||++.....
T Consensus 107 ~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~----------- 175 (525)
T TIGR01327 107 LLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPER----------- 175 (525)
T ss_pred HHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH-----------
Confidence 9999999999999999999964 257899999999999999999999999999999999998633210
Q ss_pred ccccccccccccC-C-CCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490 226 KNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 303 (370)
Q Consensus 226 ~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~ 303 (370)
....+ . ..++++++++||+|++|+|++++|+++||++.|++||+|++|||+|||++||++||++||++|+
T Consensus 176 --------~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~ 247 (525)
T TIGR01327 176 --------AEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGH 247 (525)
T ss_pred --------HHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCC
Confidence 01111 1 2479999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490 304 LGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366 (370)
Q Consensus 304 i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 366 (370)
|+||+||||++||+ +++|||++|||++|||+||+|.+++.++++.+++|+.+|++|+++.+.
T Consensus 248 i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~ 309 (525)
T TIGR01327 248 VRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNA 309 (525)
T ss_pred eeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCce
Confidence 99999999999994 689999999999999999999999999999999999999999987643
No 16
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-63 Score=468.38 Aligned_cols=297 Identities=28% Similarity=0.447 Sum_probs=262.7
Q ss_pred EEEEeCCCCCCchhhHHHHHhcCC-Cceee-eCCCCChhhhcCcceEEEE-eCCCCCHHHHh-cCCCCeEEEEeCcccCc
Q 017490 38 RVLFCGPHFPASHNYTKEYLQNYP-SIQVD-VVPISDVPDVIANYHLCVV-KTMRLDSNCIS-RANQMKLIMQFGVGLEG 113 (370)
Q Consensus 38 ~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~d~~i~-~~~~~~~~~l~-~~~~Lk~I~~~~~G~d~ 113 (370)
+||++.+.-.. - .+.++... .+++. ....||+...++++|++++ +.+++++++|+ ...+||+|+++++|+||
T Consensus 8 ~il~~e~~~~~---~-~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dN 83 (406)
T KOG0068|consen 8 KILVAESLDQA---C-IEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDN 83 (406)
T ss_pred eEEEecccchH---H-HHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccc
Confidence 78888765322 1 23444432 33332 3455688899999997665 57899999999 56789999999999999
Q ss_pred cchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC--CCcccccCceEEEEecCchhHH
Q 017490 114 VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVE 191 (370)
Q Consensus 114 id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiGlG~IG~~ 191 (370)
+|+++++++||.|.|+|.+ |+.++||+++++++++.|++.+....+++|+|.. ..|.+++|||+||+|+|.||++
T Consensus 84 VDL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGse 160 (406)
T KOG0068|consen 84 VDLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSE 160 (406)
T ss_pred cChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHH
Confidence 9999999999999999998 8899999999999999999999999999999974 4789999999999999999999
Q ss_pred HHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHH
Q 017490 192 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKS 270 (370)
Q Consensus 192 vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~ 270 (370)
+|++++++||+|++||+-... +....++ ...+++|+++.||+|++|+|++|+|++|+|.+
T Consensus 161 VA~r~k~~gm~vI~~dpi~~~-------------------~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~ 221 (406)
T KOG0068|consen 161 VAVRAKAMGMHVIGYDPITPM-------------------ALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDE 221 (406)
T ss_pred HHHHHHhcCceEEeecCCCch-------------------HHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHH
Confidence 999999999999999986432 1223333 45789999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCC--CCcccCCCceEEccCCCCccHHHHHHHHH
Q 017490 271 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP--NDPILKFKNVLITPHVGGVTEHSYRSMAK 348 (370)
Q Consensus 271 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~--~~pL~~~~nvilTPHia~~t~~~~~~~~~ 348 (370)
.|++||+|..+||+|||++||++||++||++|+++||++|||+.||... ++.|.+||||++|||+|++|.|++.+++.
T Consensus 222 tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iai 301 (406)
T KOG0068|consen 222 TFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAI 301 (406)
T ss_pred HHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999654 78999999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 017490 349 VVGDVALQLHAG 360 (370)
Q Consensus 349 ~~~~ni~~~~~g 360 (370)
.+++++..|.+|
T Consensus 302 evaea~~~~~~~ 313 (406)
T KOG0068|consen 302 EVAEAVSDYING 313 (406)
T ss_pred HHHHHHHHHhcc
Confidence 999999999998
No 17
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=6e-62 Score=471.47 Aligned_cols=300 Identities=22% Similarity=0.340 Sum_probs=253.0
Q ss_pred cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccch
Q 017490 37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI 116 (370)
Q Consensus 37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~ 116 (370)
|.+++..+... ...+...+.+..|++++..++.++ ..++|+++++.. +.++++ .|+||||++.|+|+|++|.
T Consensus 1 ~~~~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~----~~~a~~~~~~~~--~~~~l~-~~~Lk~I~~~~aG~d~i~~ 72 (312)
T PRK15469 1 MDIIFYHPTFD-TQWWIEALRKALPQARVRAWKSGD----NDPADYALVWHP--PVEMLA-GRDLKAVFALGAGVDSILS 72 (312)
T ss_pred CEEEEeCCccC-HHHHHHHHHHHCCCCeEEecCCCC----CccCeEEEEeCC--ChHHhc-cCCceEEEEcccccchhhh
Confidence 36777776532 233444444556777765444333 467898877653 567776 5899999999999999983
Q ss_pred hh-----HhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHH
Q 017490 117 NA-----ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE 191 (370)
Q Consensus 117 ~~-----~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~ 191 (370)
+. +.++||.|+|+++. +|+.+||||++++||++.|++..+...++.+.|....+.++.|+||||||+|.||+.
T Consensus 73 ~~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~ 150 (312)
T PRK15469 73 KLQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSK 150 (312)
T ss_pred hhccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHH
Confidence 22 44589999998764 277999999999999999999999999999999866667899999999999999999
Q ss_pred HHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHH
Q 017490 192 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSF 271 (370)
Q Consensus 192 vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~ 271 (370)
+|++|++|||+|++||++.+.. ..........++++++++||+|++|+|+|++|+++|+++.
T Consensus 151 vA~~l~afG~~V~~~~~~~~~~------------------~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~ 212 (312)
T PRK15469 151 VAQSLQTWGFPLRCWSRSRKSW------------------PGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQL 212 (312)
T ss_pred HHHHHHHCCCEEEEEeCCCCCC------------------CCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHH
Confidence 9999999999999999865431 0111112346899999999999999999999999999999
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHH
Q 017490 272 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 351 (370)
Q Consensus 272 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~ 351 (370)
|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|+++|||++|||++|||+||.|.+. ++.+.+.
T Consensus 213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~ 290 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYIS 290 (312)
T ss_pred HhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875 6889999
Q ss_pred HHHHHHHcCCCCCCc
Q 017490 352 DVALQLHAGTPLTGL 366 (370)
Q Consensus 352 ~ni~~~~~g~~~~~~ 366 (370)
+|+++|.+|+++.|.
T Consensus 291 ~n~~~~~~g~~~~~~ 305 (312)
T PRK15469 291 RTIAQLEKGERVCGQ 305 (312)
T ss_pred HHHHHHHcCCCCccc
Confidence 999999999998654
No 18
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1.2e-60 Score=466.68 Aligned_cols=294 Identities=21% Similarity=0.347 Sum_probs=254.7
Q ss_pred hhhHHHHHhcCCCceeee---CCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCC--CeEEEEeCcccCccchhhHhcCC
Q 017490 50 HNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVGLEGVDINAATRCG 123 (370)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~--Lk~I~~~~~G~d~id~~~~~~~g 123 (370)
..+..++.+.+ ++++.. ...++..+.+.++|+++++ ..++++++++++|+ ||+|++.|+|+|+||+++|+++|
T Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~g 92 (332)
T PRK08605 14 APYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYN 92 (332)
T ss_pred HHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCC
Confidence 45555555554 444322 2234556778899987664 57999999999997 99999999999999999999999
Q ss_pred eEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCC---CCcccccCceEEEEecCchhHHHHHHh-ccC
Q 017490 124 IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGNIGVELAKRL-RPF 199 (370)
Q Consensus 124 I~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~---~~~~~l~g~tvGIiGlG~IG~~vA~~l-~~~ 199 (370)
|.|+|+||+ |+.+||||++++||+++|++..+++.++++.|.. ..+++|+|++|||||+|.||+++|++| ++|
T Consensus 93 i~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~ 169 (332)
T PRK08605 93 LIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGY 169 (332)
T ss_pred CEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 999999998 7899999999999999999999999999987642 247899999999999999999999999 789
Q ss_pred CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCc
Q 017490 200 GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS 279 (370)
Q Consensus 200 G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga 279 (370)
||+|++||++..... ...+ ....++++++++||+|++|+|++++|+++++++.++.||+|+
T Consensus 170 g~~V~~~d~~~~~~~----------------~~~~---~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~ga 230 (332)
T PRK08605 170 GSDVVAYDPFPNAKA----------------ATYV---DYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGA 230 (332)
T ss_pred CCEEEEECCCccHhH----------------Hhhc---cccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCc
Confidence 999999998754310 0111 023489999999999999999999999999999999999999
Q ss_pred EEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC--CCCCC-----------cccCCCceEEccCCCCccHHHHHHH
Q 017490 280 LLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPND-----------PILKFKNVLITPHVGGVTEHSYRSM 346 (370)
Q Consensus 280 ilIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP--l~~~~-----------pL~~~~nvilTPHia~~t~~~~~~~ 346 (370)
+|||+|||.++|+++|+++|++|+|+||+||||++|| +|.++ +||++|||++|||+||+|.++.+++
T Consensus 231 ilIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~ 310 (332)
T PRK08605 231 VFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNL 310 (332)
T ss_pred EEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHH
Confidence 9999999999999999999999999999999999998 45554 4999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCc
Q 017490 347 AKVVGDVALQLHAGTPLTGL 366 (370)
Q Consensus 347 ~~~~~~ni~~~~~g~~~~~~ 366 (370)
.+.+++|+.+|++|++..+.
T Consensus 311 ~~~~~~n~~~~~~g~~~~~~ 330 (332)
T PRK08605 311 IVDALDATLEVLQTGTTRLR 330 (332)
T ss_pred HHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999877654
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-58 Score=444.95 Aligned_cols=253 Identities=23% Similarity=0.369 Sum_probs=226.4
Q ss_pred cCcceEEEEeCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHH
Q 017490 77 IANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 156 (370)
Q Consensus 77 ~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~ 156 (370)
..++|+++.... +..+|+||||++.|+|+|+||+++|+++||.++|. |+ |+.+||||++++||+++|++.
T Consensus 32 ~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~ 101 (303)
T PRK06436 32 YYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNIC 101 (303)
T ss_pred cCCCCEEEecCC------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChH
Confidence 457787755432 23468999999999999999999999999988875 54 678999999999999999999
Q ss_pred HHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc
Q 017490 157 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE 236 (370)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (370)
.+++.+++|.|....+++|.||||||||+|.||+++|+++++|||+|++|||+..+. ....
T Consensus 102 ~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------------------~~~~ 162 (303)
T PRK06436 102 ENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-------------------GISS 162 (303)
T ss_pred HHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-------------------Cccc
Confidence 999999999998767789999999999999999999999999999999999874321 1111
Q ss_pred cCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Q 017490 237 KGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 316 (370)
Q Consensus 237 ~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 316 (370)
...++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|+++|+++|++|++.||+||||++||
T Consensus 163 --~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP 240 (303)
T PRK06436 163 --IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP 240 (303)
T ss_pred --ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCC
Confidence 135899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCceEEccCCC-CccHHHHHHHHHHHHHHHHHHHcCCCC
Q 017490 317 FDPNDPILKFKNVLITPHVG-GVTEHSYRSMAKVVGDVALQLHAGTPL 363 (370)
Q Consensus 317 l~~~~pL~~~~nvilTPHia-~~t~~~~~~~~~~~~~ni~~~~~g~~~ 363 (370)
+++++ .+|||++|||++ ++|.++.+++.+.+++|+.+|++|+++
T Consensus 241 ~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~~ 285 (303)
T PRK06436 241 IITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKPK 285 (303)
T ss_pred CCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 98776 689999999986 589999999999999999999999874
No 20
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=6.7e-59 Score=446.72 Aligned_cols=272 Identities=36% Similarity=0.549 Sum_probs=243.1
Q ss_pred hhhhcCcceEEEEe--CCCCCHHHHhcC-CCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHH
Q 017490 73 VPDVIANYHLCVVK--TMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149 (370)
Q Consensus 73 ~~~~~~~~d~~i~~--~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L 149 (370)
+...+.+....+.. ...++.+.+.+. |+||+|.++|+|+||||+++|++|||+|+|+|+. +..+|||++++++|
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil 130 (336)
T KOG0069|consen 54 FLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLL 130 (336)
T ss_pred hhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHH
Confidence 34445555444332 456677777775 9999999999999999999999999999999998 66899999999999
Q ss_pred HHHHhHHHHHHHHHhcccCC----CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhh
Q 017490 150 GLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV 225 (370)
Q Consensus 150 ~~~R~~~~~~~~~~~~~~~~----~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~ 225 (370)
.++|++...++++++|.|.. +.+..+.||||||+|+|+||+.+|++|++|||.+.+++|++.+..
T Consensus 131 ~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~----------- 199 (336)
T KOG0069|consen 131 ALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPE----------- 199 (336)
T ss_pred HHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchh-----------
Confidence 99999999999999999842 357889999999999999999999999999988999988765421
Q ss_pred ccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490 226 KNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 304 (370)
Q Consensus 226 ~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i 304 (370)
...++. ...++++++.+||+|++|||+|++|+++||++.|++||+|++|||++||+++|++++++||++|+|
T Consensus 200 -------~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i 272 (336)
T KOG0069|consen 200 -------EAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKI 272 (336)
T ss_pred -------hHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCc
Confidence 111222 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 017490 305 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366 (370)
Q Consensus 305 ~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~ 366 (370)
.+||||||++|| +.++||++++||++|||+|+.|.+++.+|++.+++|+.+++.|+++...
T Consensus 273 ~~aGlDVf~~EP-~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~ 333 (336)
T KOG0069|consen 273 AGAGLDVFEPEP-PVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTP 333 (336)
T ss_pred ccccccccCCCC-CCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCc
Confidence 999999999999 8999999999999999999999999999999999999999999987654
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=6.1e-58 Score=452.50 Aligned_cols=277 Identities=19% Similarity=0.314 Sum_probs=239.5
Q ss_pred cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCC-hhhhcCcceEEEEeC-CCCCHHHHhcCCCCeEEEEeCcccCcc
Q 017490 37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD-VPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGV 114 (370)
Q Consensus 37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~-~~~~~~~l~~~~~Lk~I~~~~~G~d~i 114 (370)
|||++.... | +..++++.+..+ ...+..+ ..+.+.++|+++++. .++++++++ .|+||||+++++|+|||
T Consensus 1 mkI~~d~~~-p----~~~~~~~~~~~v--~~~~~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~i 72 (381)
T PRK00257 1 MKIVADENI-P----LLDAFFAGFGEI--RRLPGRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHL 72 (381)
T ss_pred CEEEEecCc-h----hHHHHHhhCCcE--EEcCCcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCcccccc
Confidence 688887654 2 334555554433 3333223 356788999887754 689999998 58999999999999999
Q ss_pred chhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHH
Q 017490 115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK 194 (370)
Q Consensus 115 d~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~ 194 (370)
|+++++++||.|+|+||+ |+.+||||++++||++.|+ .+.++.||||||||+|+||+.+|+
T Consensus 73 D~~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----------------~g~~l~gktvGIIG~G~IG~~va~ 133 (381)
T PRK00257 73 DLDYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----------------EGVDLAERTYGVVGAGHVGGRLVR 133 (381)
T ss_pred CHHHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----------------cCCCcCcCEEEEECCCHHHHHHHH
Confidence 999999999999999998 8899999999999999885 257899999999999999999999
Q ss_pred HhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCCh----hhhcccCHH
Q 017490 195 RLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKS 270 (370)
Q Consensus 195 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~----~t~~li~~~ 270 (370)
++++|||+|++||+..... +. .....++++++++||+|++|+|+|+ +|++|||++
T Consensus 134 ~l~a~G~~V~~~Dp~~~~~------------------~~---~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~ 192 (381)
T PRK00257 134 VLRGLGWKVLVCDPPRQEA------------------EG---DGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEA 192 (381)
T ss_pred HHHHCCCEEEEECCccccc------------------cc---CccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHH
Confidence 9999999999999853220 00 0124689999999999999999998 599999999
Q ss_pred HHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHH
Q 017490 271 FLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVV 350 (370)
Q Consensus 271 ~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~ 350 (370)
.|++||+|++|||+|||++||++||+++|++|++.||+||||++||. +++|||.. |+++|||+||+|.++..++.+.+
T Consensus 193 ~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~ 270 (381)
T PRK00257 193 FLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQI 270 (381)
T ss_pred HHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999995 67899985 99999999999999999999999
Q ss_pred HHHHHHHHcCCCC
Q 017490 351 GDVALQLHAGTPL 363 (370)
Q Consensus 351 ~~ni~~~~~g~~~ 363 (370)
++|+.+|+++.+.
T Consensus 271 ~~nl~~~~~~~~~ 283 (381)
T PRK00257 271 YQALCRFFGIPAR 283 (381)
T ss_pred HHHHHHHHcCCCc
Confidence 9999999988754
No 22
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=5.7e-58 Score=451.49 Aligned_cols=276 Identities=24% Similarity=0.342 Sum_probs=235.9
Q ss_pred cEEEEeCCCCCCchhhHHHHHhcCCCceeeeCCCCChhhhcCcceEEEEe-CCCCCHHHHhcCCCCeEEEEeCcccCccc
Q 017490 37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD 115 (370)
Q Consensus 37 ~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 115 (370)
|||++.... + +..++++.+.++.... ..+...+.+.++|+++++ .+++++++++ .|+||+|+++++|+||||
T Consensus 1 mkIl~d~~~-~----~~~~~~~~~~ev~~~~-~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCc-c----hHHHHHhhcCcEEEeC-CCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccC
Confidence 588887543 3 3345555543333322 223345668899998875 4689999986 699999999999999999
Q ss_pred hhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHH
Q 017490 116 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 195 (370)
Q Consensus 116 ~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~ 195 (370)
+++++++||.|+|+||+ |+.+||||++++||++.|+ .+.+|.||||||||+|+||+.+|++
T Consensus 74 ~~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~----------------~g~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAER----------------DGFSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred HHHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhcc----------------CCCCcCCCEEEEECcCHHHHHHHHH
Confidence 99999999999999998 8899999999999999985 2468999999999999999999999
Q ss_pred hccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChh----hhcccCHHH
Q 017490 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKSF 271 (370)
Q Consensus 196 l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~----t~~li~~~~ 271 (370)
|++|||+|++||+..... . ......++++++++||+|++|+|+|++ |++|+|++.
T Consensus 135 l~a~G~~V~~~dp~~~~~------------------~---~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~ 193 (378)
T PRK15438 135 LEALGIKTLLCDPPRADR------------------G---DEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL 193 (378)
T ss_pred HHHCCCEEEEECCccccc------------------c---cccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence 999999999999753210 0 001346899999999999999999996 999999999
Q ss_pred HhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHH
Q 017490 272 LSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 351 (370)
Q Consensus 272 l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~ 351 (370)
|++||+|++|||+|||++||++||+++|++|++.||+||||++||. ++++||..++ ++|||+||+|.++..++...++
T Consensus 194 l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~ 271 (378)
T PRK15438 194 IRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVF 271 (378)
T ss_pred HhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999995 6778987765 9999999999999999999999
Q ss_pred HHHHHHHcCCC
Q 017490 352 DVALQLHAGTP 362 (370)
Q Consensus 352 ~ni~~~~~g~~ 362 (370)
+|+.+|+ |.+
T Consensus 272 ~~l~~~~-~~~ 281 (378)
T PRK15438 272 EAYSKFI-GHE 281 (378)
T ss_pred HHHHHHH-cCc
Confidence 9999998 444
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=5.2e-49 Score=352.68 Aligned_cols=174 Identities=39% Similarity=0.619 Sum_probs=153.9
Q ss_pred HHHHHHHHHhHHHHHHHHHhccc---CCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccc
Q 017490 145 IYLMLGLLRKQNEMRMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS 221 (370)
Q Consensus 145 l~~~L~~~R~~~~~~~~~~~~~~---~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~ 221 (370)
+++||++.|++..++..++++.| ....+++++|+||||||+|.||+.+|+++++|||+|++|||+..+..
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~------- 73 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE------- 73 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH-------
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh-------
Confidence 58999999999999999999999 56678999999999999999999999999999999999999876421
Q ss_pred hhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 222 ALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
.....+ ...++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|+
T Consensus 74 -----------~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 74 -----------GADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -----------HHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred -----------hcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 011111 35699999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCceEEEEecCCCCCCCCCCcccCCCceEEccCCC
Q 017490 301 CGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVG 336 (370)
Q Consensus 301 ~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia 336 (370)
+|+++||+||||++||+++++|||++|||++|||+|
T Consensus 143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 999999999999999999999999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.97 E-value=3.6e-30 Score=245.77 Aligned_cols=251 Identities=25% Similarity=0.392 Sum_probs=220.9
Q ss_pred eCCCCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhc
Q 017490 86 KTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 165 (370)
Q Consensus 86 ~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~ 165 (370)
.+..++++.+++++.||++.+.|.|+|++|+.+|.+.||.|||.|+. ..+.+|+-++.++|.++|+-....+..+++
T Consensus 81 h~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl~l~rrntw~cq~l~eg 157 (435)
T KOG0067|consen 81 HTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHILNLYRRNTWLCQALREG 157 (435)
T ss_pred eecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHHhhhcccchhhhhhccc
Confidence 35788999999999999999999999999999999999999999997 347899999999999999999999999998
Q ss_pred ccCCC---------CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc
Q 017490 166 KLGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE 236 (370)
Q Consensus 166 ~~~~~---------~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (370)
.|... .....+|.++|++|+|.+|++++.++++||+.|+.||++.... .-..
T Consensus 158 ~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g-------------------~~~~ 218 (435)
T KOG0067|consen 158 TCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDG-------------------IDKS 218 (435)
T ss_pred ceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhh-------------------hhhh
Confidence 87532 2356899999999999999999999999999999999875431 1111
Q ss_pred cC--CCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490 237 KG--CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314 (370)
Q Consensus 237 ~~--~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 314 (370)
.+ ..-++++++-++|.+++||-+++.+.++|+.-.+++|+.|++++|++||+++|+++|.++|++|++.+++
T Consensus 219 lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa------ 292 (435)
T KOG0067|consen 219 LGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA------ 292 (435)
T ss_pred cccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc------
Confidence 11 2235899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCC-CCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 017490 315 EPF-DPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTG 365 (370)
Q Consensus 315 EPl-~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~ 365 (370)
|. -...||.+.||.+.|||.+++++.+..++.+.++..+++-+.|+.+..
T Consensus 293 -~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~ 343 (435)
T KOG0067|consen 293 -PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDS 343 (435)
T ss_pred -CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchh
Confidence 22 134578999999999999999999999999999999998888876543
No 25
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.85 E-value=7.3e-21 Score=191.48 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=134.8
Q ss_pred EeCcccCccc-hhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEe
Q 017490 106 QFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG 184 (370)
Q Consensus 106 ~~~~G~d~id-~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG 184 (370)
-+++|+..+- +....+.||+|+|+|++ ++.+++|+++++++++... .+|.+ +..++|++|+|+|
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~------~~R~~------~~~LaGKtVgVIG 261 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDG------IFRAT------DVMIAGKTVVVCG 261 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHH------HHHhc------CCCcCCCEEEEEC
Confidence 3466766652 22223458999999998 6799999999999998833 33443 4579999999999
Q ss_pred cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhh
Q 017490 185 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264 (370)
Q Consensus 185 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~ 264 (370)
+|.||+.+|+++++|||+|+++++++..... .........+++++++.||+|++|. .++
T Consensus 262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~-----------------A~~~G~~~~~leell~~ADIVI~at----Gt~ 320 (476)
T PTZ00075 262 YGDVGKGCAQALRGFGARVVVTEIDPICALQ-----------------AAMEGYQVVTLEDVVETADIFVTAT----GNK 320 (476)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhHHH-----------------HHhcCceeccHHHHHhcCCEEEECC----Ccc
Confidence 9999999999999999999999876543100 0001112357899999999999984 478
Q ss_pred cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCC
Q 017490 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP 319 (370)
Q Consensus 265 ~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~ 319 (370)
++|+++.|+.||+|++|||+||+ |++.++++|+++. ++||++.||...
T Consensus 321 ~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 321 DIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred cccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 89999999999999999999999 7889999998754 789999999643
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.82 E-value=5.9e-20 Score=176.37 Aligned_cols=156 Identities=20% Similarity=0.306 Sum_probs=124.1
Q ss_pred CCCHHHHhcCCCCeEEEEeCcccCccchh-hHhcCCeEEe------ccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHH
Q 017490 89 RLDSNCISRANQMKLIMQFGVGLEGVDIN-AATRCGIKVA------RIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMA 161 (370)
Q Consensus 89 ~~~~~~l~~~~~Lk~I~~~~~G~d~id~~-~~~~~gI~V~------n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~ 161 (370)
++++++++++| .++...+|+++.|++ .|+++||.|+ |++.+ |+.++||+++.+++..
T Consensus 81 ~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~---n~~~~Ae~ai~~al~~---------- 144 (287)
T TIGR02853 81 VLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIY---NSIPTAEGAIMMAIEH---------- 144 (287)
T ss_pred cccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEE---ccHhHHHHHHHHHHHh----------
Confidence 35788999888 367778889999998 8999999999 88776 7899999999877743
Q ss_pred HHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCC
Q 017490 162 IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE 241 (370)
Q Consensus 162 ~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (370)
.+.+++|++++|+|+|.||+.+|+.|+++|++|++++|+....... .+.........
T Consensus 145 ---------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~--------------~~~g~~~~~~~ 201 (287)
T TIGR02853 145 ---------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI--------------TEMGLIPFPLN 201 (287)
T ss_pred ---------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH--------------HHCCCeeecHH
Confidence 1347899999999999999999999999999999999975431000 00000001234
Q ss_pred CHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 242 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 242 ~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+++++++++|+|++|+|.. +++++.++.||+++++||++..+
T Consensus 202 ~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 202 KLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence 6788899999999999864 67888999999999999999844
No 27
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.78 E-value=4.6e-19 Score=151.18 Aligned_cols=98 Identities=24% Similarity=0.406 Sum_probs=75.2
Q ss_pred EEEeCCCCCCchhhHHHHHhc-CCCceeee-CCCCChhhhcCcceEEEEeCCC-CCHHHHhcCCCCeEEEEeCcccCccc
Q 017490 39 VLFCGPHFPASHNYTKEYLQN-YPSIQVDV-VPISDVPDVIANYHLCVVKTMR-LDSNCISRANQMKLIMQFGVGLEGVD 115 (370)
Q Consensus 39 vl~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~d~~i~~~~~-~~~~~l~~~~~Lk~I~~~~~G~d~id 115 (370)
||++++..+. ..+.++. + .+.+.. .+.+++.+.++++|+++++..+ +++++++++|+||||++.|+|+|+||
T Consensus 1 ili~~~~~~~----~~~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 75 (133)
T PF00389_consen 1 ILITDPLPDE----EIERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID 75 (133)
T ss_dssp EEESSS-SHH----HHHHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-
T ss_pred eEEeccCCHH----HHHHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc
Confidence 5677654322 3345554 3 444432 2345677889999999987665 99999999999999999999999999
Q ss_pred hhhHhcCCeEEeccCCCCCCCchhHHHHH
Q 017490 116 INAATRCGIKVARIPGDVTGNAASCAELT 144 (370)
Q Consensus 116 ~~~~~~~gI~V~n~pg~~~~na~~vAE~~ 144 (370)
+++|+++||.|+|+||+ |+.+||||+
T Consensus 76 ~~~a~~~gI~V~n~~g~---~~~aVAE~a 101 (133)
T PF00389_consen 76 LEAAKERGIPVTNVPGY---NAEAVAEHA 101 (133)
T ss_dssp HHHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred HHHHhhCeEEEEEeCCc---CCcchhccc
Confidence 99999999999999998 789999999
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.64 E-value=2.5e-15 Score=145.09 Aligned_cols=173 Identities=19% Similarity=0.280 Sum_probs=127.4
Q ss_pred hhcCcceEEEEeCC-----------------CCCHHHHhcCCCCeEEEEeCcccCccchhhHhcCCeEEeccCCCC---C
Q 017490 75 DVIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV---T 134 (370)
Q Consensus 75 ~~~~~~d~~i~~~~-----------------~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~---~ 134 (370)
+.+.++|+++.... .++++.++.+|++..+. .|.+.++++ +.+.++||.+.+.+... .
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 44678998875411 13688999999997544 589999988 78999999999876420 1
Q ss_pred CCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccc
Q 017490 135 GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 214 (370)
Q Consensus 135 ~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~ 214 (370)
-|+.++||.++...+.. .+..++|++++|+|+|.+|+.+++.|+++|++|.++||+.....
T Consensus 129 ~ns~~~aegav~~a~~~-------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~ 189 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEH-------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLA 189 (296)
T ss_pred hccHhHHHHHHHHHHHh-------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 26788888866543311 12467899999999999999999999999999999999854311
Q ss_pred ccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490 215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287 (370)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg 287 (370)
.. ...........++.+.++++|+|+.++|. .+++++.++.|++|+++||++..
T Consensus 190 ~~--------------~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 190 RI--------------TEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred HH--------------HHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 00 00000001224677888999999999884 36788999999999999999864
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.61 E-value=9.9e-16 Score=154.18 Aligned_cols=121 Identities=20% Similarity=0.254 Sum_probs=101.0
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
..+.|++|+|+|+|.||+.+|++++++|++|+++++++.+... .........+++++++.+|+
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e-----------------A~~~G~~vv~leEal~~ADV 312 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ-----------------ALMEGYQVLTLEDVVSEADI 312 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH-----------------HHhcCCeeccHHHHHhhCCE
Confidence 3579999999999999999999999999999999987643110 00000123468899999999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHhCCceEEEEecCCCC
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR-GGLLDYEAIAHY--LECGHLGGLGIDVAWTE 315 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR-g~~vd~~aL~~a--L~~g~i~ga~lDV~~~E 315 (370)
|+.+ ..++++++.+.|+.||+|++|+|+|| +..||+++|.++ ++.+.++ +.+|+|+.|
T Consensus 313 VI~t----TGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 313 FVTT----TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred EEEC----CCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 9873 45788999999999999999999999 689999999998 9999998 999999875
No 30
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.52 E-value=2.3e-14 Score=143.08 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=99.7
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD 251 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 251 (370)
..+.|++|+|+|+|.||+.+|++++++|++|+++|+++.+... ....+ ...+++++++.+|
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~------------------A~~~G~~v~~leeal~~aD 252 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALE------------------AAMDGFRVMTMEEAAKIGD 252 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHH------------------HHhcCCEeCCHHHHHhcCC
Confidence 3589999999999999999999999999999999877643110 01111 2346788899999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCceEEEEecCCC
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHLGGLGIDVAWT 314 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i~ga~lDV~~~ 314 (370)
+|+.+.. +.++++.+.|+.||+|++++|+||+.+ ||.++|.+++.+....+..+|+|.-
T Consensus 253 VVItaTG----~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 253 IFITATG----NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred EEEECCC----CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 9987643 677899999999999999999999998 9999999999888888899999873
No 31
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.50 E-value=2.8e-14 Score=137.42 Aligned_cols=93 Identities=28% Similarity=0.389 Sum_probs=76.2
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD 251 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 251 (370)
..|+||||||||+|.||+++|++|+++|++|+++++..... +.....+ ...++++++++||
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~------------------~~A~~~G~~v~sl~Eaak~AD 73 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSF------------------EVAKADGFEVMSVSEAVRTAQ 73 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhh------------------HHHHHcCCEECCHHHHHhcCC
Confidence 57999999999999999999999999999999998653221 0111111 2348999999999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 284 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~ 284 (370)
+|++|+|+ ++++++++.+.++.||+|++|+-.
T Consensus 74 VV~llLPd-~~t~~V~~~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 74 VVQMLLPD-EQQAHVYKAEVEENLREGQMLLFS 105 (335)
T ss_pred EEEEeCCC-hHHHHHHHHHHHhcCCCCCEEEEC
Confidence 99999997 677999999999999999988643
No 32
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.40 E-value=6.5e-13 Score=126.67 Aligned_cols=115 Identities=20% Similarity=0.302 Sum_probs=98.8
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l 255 (370)
.+||+||+|.||.++|++|...|+.|.+|||++.+.. +.....+ ...+..++.+++|+|++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~-----------------~~~~~~Ga~~a~s~~eaa~~aDvVit 63 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAA-----------------ELLAAAGATVAASPAEAAAEADVVIT 63 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhh-----------------HHHHHcCCcccCCHHHHHHhCCEEEE
Confidence 4799999999999999999999999999999876521 1222222 45678899999999999
Q ss_pred eccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 256 CLSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 256 ~lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
|+|..++.+.++- ...++.+|||+++||+|+.+....+.+.+.++++.+. .+|.
T Consensus 64 mv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA 119 (286)
T COG2084 64 MLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA 119 (286)
T ss_pred ecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence 9999999999774 5789999999999999999999999999999999887 6665
No 33
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.40 E-value=3.2e-13 Score=119.22 Aligned_cols=115 Identities=19% Similarity=0.345 Sum_probs=88.4
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC 256 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~ 256 (370)
++|||||+|.||+.+|++|...|++|.+|||++.+.. .+..... ...++.+++++||+|++|
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~-----------------~~~~~g~~~~~s~~e~~~~~dvvi~~ 64 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAE-----------------ALAEAGAEVADSPAEAAEQADVVILC 64 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHH-----------------HHHHTTEEEESSHHHHHHHBSEEEE-
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhh-----------------hhHHhhhhhhhhhhhHhhcccceEee
Confidence 5899999999999999999999999999999865421 1111111 346899999999999999
Q ss_pred ccCChhhhcccC-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 257 LSLNKQTAGIVN-KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 257 lP~t~~t~~li~-~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
+|..++++.++. .+.++.+++|.++||++...+-+...+.+.+.+..+. .+|.
T Consensus 65 v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 65 VPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred cccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 999888888763 2378889999999999999999999999999987765 6666
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.33 E-value=3.8e-12 Score=127.91 Aligned_cols=155 Identities=22% Similarity=0.285 Sum_probs=106.7
Q ss_pred EeCcccCcc-chhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEe
Q 017490 106 QFGVGLEGV-DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG 184 (370)
Q Consensus 106 ~~~~G~d~i-d~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG 184 (370)
-+++|+..+ ......+.+++|.|++.+.+ .+.-|...+.--+....+.. . .+..+.|++|+|+|
T Consensus 155 eTttGv~rl~~~~~~~~l~~Pv~~vn~s~~---K~~~dn~~gt~~s~~~ai~r------a------t~~~l~Gk~VlViG 219 (425)
T PRK05476 155 ETTTGVHRLYAMAKDGALKFPAINVNDSVT---KSKFDNRYGTGESLLDGIKR------A------TNVLIAGKVVVVAG 219 (425)
T ss_pred cchHHHHHHHHHHHcCCCCCCEEecCCccc---CccccccHHHHhhhHHHHHH------h------ccCCCCCCEEEEEC
Confidence 456777665 22223456899999988743 44333222222221111110 0 12357899999999
Q ss_pred cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEeccCChhh
Q 017490 185 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQT 263 (370)
Q Consensus 185 lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~lP~t~~t 263 (370)
+|.||+.+|++|+++|++|+++|+++.+... ....+ ...+++++++.+|+|+.+. .+
T Consensus 220 ~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~------------------A~~~G~~v~~l~eal~~aDVVI~aT----G~ 277 (425)
T PRK05476 220 YGDVGKGCAQRLRGLGARVIVTEVDPICALQ------------------AAMDGFRVMTMEEAAELGDIFVTAT----GN 277 (425)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEcCCchhhHH------------------HHhcCCEecCHHHHHhCCCEEEECC----CC
Confidence 9999999999999999999999987654210 00111 2346889999999998874 35
Q ss_pred hcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 017490 264 AGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH 297 (370)
Q Consensus 264 ~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~ 297 (370)
.++|+.+.|..||+|++++|+|+... +|.++|.+
T Consensus 278 ~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 278 KDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 67899999999999999999999876 77777654
No 35
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.28 E-value=9.9e-12 Score=119.54 Aligned_cols=109 Identities=17% Similarity=0.247 Sum_probs=89.2
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEe
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCC 256 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~ 256 (370)
+|||||+|.||+.+|+.+...|++|++|||++.+.. .+ .+.+ ...+.++++++||+|++|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~-----------------~~-~~~g~~~~~~~~~~~~~aDivi~~ 62 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVAD-----------------EL-LAAGAVTAETARQVTEQADVIFTM 62 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HH-HHCCCcccCCHHHHHhcCCEEEEe
Confidence 489999999999999999999999999999864411 11 1111 245788999999999999
Q ss_pred ccCChhhhccc-C-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 257 LSLNKQTAGIV-N-KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 257 lP~t~~t~~li-~-~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
+|..+.++.++ + ...++.+++|+++||+++..+.+.+++.+.+++..+.
T Consensus 63 vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 63 VPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred cCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 99888887764 3 3467889999999999999999999999999987655
No 36
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.25 E-value=1.5e-11 Score=118.42 Aligned_cols=110 Identities=17% Similarity=0.277 Sum_probs=89.8
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l 255 (370)
++|||||+|.||+.+|+.+...|++|++||+++.+.. .. .+.+ ...++++++++||+|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~-----------------~~-~~~g~~~~~~~~e~~~~~d~vi~ 64 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVA-----------------EV-IAAGAETASTAKAVAEQCDVIIT 64 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HH-HHCCCeecCCHHHHHhcCCEEEE
Confidence 4799999999999999999999999999999764411 01 1111 23578889999999999
Q ss_pred eccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 256 CLSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 256 ~lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
|+|.+..++.++. .+.++.+++|.++||+++..+...+++.+.+.+..+.
T Consensus 65 ~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~ 116 (296)
T PRK11559 65 MLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIE 116 (296)
T ss_pred eCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 9998888887763 3467889999999999999998889999999887665
No 37
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.24 E-value=2.2e-11 Score=117.59 Aligned_cols=115 Identities=15% Similarity=0.230 Sum_probs=93.4
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC 256 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~ 256 (370)
++|||||+|.||..+|+.+...|++|.+|||++.+.. .+..... ...+..+++++||+|++|
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~-----------------~~~~~g~~~~~s~~~~~~~aDvVi~~ 64 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVD-----------------ALVDKGATPAASPAQAAAGAEFVITM 64 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHcCCcccCCHHHHHhcCCEEEEe
Confidence 3799999999999999999999999999999865421 1111111 345788899999999999
Q ss_pred ccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 257 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 257 lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
+|....++.++. ...+..+++|.++||+|++.+...+.+.+.+.+..+. .+|.
T Consensus 65 vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 65 LPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred cCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 998877777664 3467789999999999999999999999999998876 5665
No 38
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.23 E-value=3.4e-11 Score=116.42 Aligned_cols=112 Identities=17% Similarity=0.255 Sum_probs=91.7
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc---CCEE
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK---ADVV 253 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~---aDiV 253 (370)
+|||||+|.||+.+|++|...|++|++|||++.+.. .+ .+.+ ...+.++++++ +|+|
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~-----------------~~-~~~g~~~~~s~~~~~~~~~~advV 63 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVD-----------------VA-GKLGITARHSLEELVSKLEAPRTI 63 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH-----------------HH-HHCCCeecCCHHHHHHhCCCCCEE
Confidence 699999999999999999999999999999754311 11 1111 23578888876 6999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
++|+|..+.++.+++ +.+..+++|.++||+|+....+..++.+.+.+..+. .+|.
T Consensus 64 i~~vp~~~~~~~v~~-~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda 118 (299)
T PRK12490 64 WVMVPAGEVTESVIK-DLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC 118 (299)
T ss_pred EEEecCchHHHHHHH-HHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence 999998878888874 677889999999999999999999999999988765 5774
No 39
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.15 E-value=5.4e-11 Score=104.24 Aligned_cols=104 Identities=23% Similarity=0.361 Sum_probs=70.8
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
..+.||++.|+|||.+|+.+|+.|+++|++|++++..|.....+ .-......+++++++++|+
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA-----------------~~dGf~v~~~~~a~~~adi 81 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQA-----------------AMDGFEVMTLEEALRDADI 81 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHH-----------------HHTT-EEE-HHHHTTT-SE
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHh-----------------hhcCcEecCHHHHHhhCCE
Confidence 56899999999999999999999999999999999876542110 0011123579999999999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH 297 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~ 297 (370)
++.+.. ...++..+.|.+||+|+++.|++.-.. +|.+.|.+
T Consensus 82 ~vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 82 FVTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp EEE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred EEECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 988754 356789999999999999999987543 55555443
No 40
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.15 E-value=1.5e-10 Score=112.12 Aligned_cols=112 Identities=20% Similarity=0.274 Sum_probs=91.4
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc---CCEE
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK---ADVV 253 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~---aDiV 253 (370)
+|||||+|.||+.+|+.|...|++|.+||+++++.. .. .+.+ ...+++++++. +|+|
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~-----------------~~-~~~g~~~~~~~~e~~~~~~~~dvv 63 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVE-----------------AL-AEEGATGADSLEELVAKLPAPRVV 63 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHH-----------------HH-HHCCCeecCCHHHHHhhcCCCCEE
Confidence 799999999999999999999999999999865421 11 1111 23578888775 6999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
++++|..+.++.+++ ..++.+++|.++||++++.......+.+.+++..+. .+|.
T Consensus 64 i~~v~~~~~~~~v~~-~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 64 WLMVPAGEITDATID-ELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred EEEecCCcHHHHHHH-HHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 999998777777773 677889999999999999999999999999998877 5675
No 41
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.14 E-value=8.1e-11 Score=114.75 Aligned_cols=125 Identities=25% Similarity=0.286 Sum_probs=86.8
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD 251 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 251 (370)
..|+|++|||||+|+||+++|+.|+.+|++|+++++...+.. ......+ ...+.++++++||
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~-----------------~~A~~~G~~~~s~~eaa~~AD 75 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSW-----------------KKAEADGFEVLTVAEAAKWAD 75 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhH-----------------HHHHHCCCeeCCHHHHHhcCC
Confidence 568999999999999999999999999999998877543310 1111112 2348899999999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCccc
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 324 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~ 324 (370)
+|++++|.+.. ..+++.+.+..|++|++| -.+-|--+ ..+. . . -+...||+...|-.|.+.++
T Consensus 76 VVvLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i--~~~~----~-~-p~~~~~Vi~vaPn~Pg~~vr 138 (330)
T PRK05479 76 VIMILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNI--HFGQ----I-V-PPADVDVIMVAPKGPGHLVR 138 (330)
T ss_pred EEEEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCCh--hhce----e-c-cCCCCcEEEeCCCCCchhhh
Confidence 99999997655 777777888899999988 44444211 1110 0 0 12456777777755555333
No 42
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.11 E-value=1.8e-10 Score=118.12 Aligned_cols=129 Identities=15% Similarity=0.092 Sum_probs=98.6
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc---CCEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK---ADVVV 254 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiV~ 254 (370)
.+||+||+|.||+.+|++|...|++|.+|||+..+...-.. ... ...........+++++.+. +|+|+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~-------~~~--~~Ga~~~~~a~s~~e~v~~l~~~dvIi 77 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-------RAK--KEGNLPLYGFKDPEDFVLSIQKPRSVI 77 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHH-------hhh--hcCCcccccCCCHHHHHhcCCCCCEEE
Confidence 36999999999999999999999999999998665211000 000 0000000134678888875 99999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 316 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 316 (370)
+|+|..+.++.++ ...++.+++|.++||+|+...-+...+.+.+++..+.....=|...++
T Consensus 78 ~~v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 78 ILVKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred EECCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 9999999999988 468889999999999999999999999999999988855444554444
No 43
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.05 E-value=4.4e-10 Score=112.83 Aligned_cols=104 Identities=21% Similarity=0.354 Sum_probs=82.2
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a 250 (370)
+..+.|++|+|+|+|.||+.+|+.++++|++|+++|+++.+.. .+...+ ...++++.+..+
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~------------------~A~~~G~~~~~~~e~v~~a 258 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL------------------QAAMEGYEVMTMEEAVKEG 258 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH------------------HHHhcCCEEccHHHHHcCC
Confidence 4467999999999999999999999999999999998765421 111222 223567888999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH 297 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~ 297 (370)
|+|+.+.. +.++++.+.+..||+|++++|+|++.+ +|..+|..
T Consensus 259 DVVI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 259 DIFVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred CEEEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 99998743 456788888999999999999999876 77777664
No 44
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.05 E-value=6.1e-10 Score=107.46 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=90.4
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEe
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCC 256 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~ 256 (370)
+|||||+|.||..+|+.|...|++|.+||++++.. ... ..+ ...+..++.++||+|++|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~------------------~~~-~~g~~~~~s~~~~~~~advVi~~ 62 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVAD------------------ELL-SLGAVSVETARQVTEASDIIFIM 62 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHH------------------HHH-HcCCeecCCHHHHHhcCCEEEEe
Confidence 69999999999999999999999999999875321 111 111 235788889999999999
Q ss_pred ccCChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 257 LSLNKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 257 lP~t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
+|..++++.++. ...++.+++|.++|++|....-..+.+.+.+.+..+. .+|.
T Consensus 63 v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 63 VPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred CCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 998888777653 2367778999999999999999999999999987665 6675
No 45
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.01 E-value=8.1e-10 Score=104.62 Aligned_cols=118 Identities=18% Similarity=0.207 Sum_probs=97.3
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV 253 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV 253 (370)
.+.+++|+||+|.||..++..|...|++|++|||+.++. +++.+... ...+..|+.+.||+|
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~-----------------~~f~~~Ga~v~~sPaeVae~sDvv 95 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKC-----------------KEFQEAGARVANSPAEVAEDSDVV 95 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHH-----------------HHHHHhchhhhCCHHHHHhhcCEE
Confidence 457899999999999999999999999999999986542 12222222 457899999999999
Q ss_pred EEeccCChhhhcccC--HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 254 VCCLSLNKQTAGIVN--KSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 254 ~l~lP~t~~t~~li~--~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
+.++|.....+.++. ...|+..++|... |+.+.-...-...|.+++.....+ .+|-
T Consensus 96 itmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA 154 (327)
T KOG0409|consen 96 ITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA 154 (327)
T ss_pred EEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence 999999999888763 4578888898887 999999998999999999988776 5665
No 46
>PLN02256 arogenate dehydrogenase
Probab=99.00 E-value=3.6e-09 Score=102.62 Aligned_cols=107 Identities=28% Similarity=0.359 Sum_probs=78.3
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH-hcCC
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKAD 251 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~aD 251 (370)
-++++|||||+|.||+.+|+.++..|++|++||++.... .....+ ...++++++ ..+|
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~-------------------~a~~~gv~~~~~~~e~~~~~aD 94 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSD-------------------IAAELGVSFFRDPDDFCEEHPD 94 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHH-------------------HHHHcCCeeeCCHHHHhhCCCC
Confidence 467799999999999999999999999999999874210 001111 235677776 4799
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 301 (370)
+|++|+|. ..+..++..-....+++++++++++.+.-+..+++.+.+..
T Consensus 95 vVilavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 95 VVLLCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred EEEEecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 99999995 46677665432566899999999999765555666666543
No 47
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.98 E-value=1.2e-09 Score=111.82 Aligned_cols=125 Identities=17% Similarity=0.223 Sum_probs=95.1
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh---cCCEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KADVVV 254 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiV~ 254 (370)
.+|||||+|.||..+|++|...|++|.+|||+++....-.. ... .... ......+++++++ ++|+|+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~-------~~~--~~g~-~i~~~~s~~e~v~~l~~~d~Ii 71 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVK-------KAK--EGNT-RVKGYHTLEELVNSLKKPRKVI 71 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-------hhh--hcCC-cceecCCHHHHHhcCCCCCEEE
Confidence 37999999999999999999999999999998654210000 000 0000 0112467888886 589999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 313 (370)
+++|....++.++ .+.+..+++|.++||++.+..-|...+.+.+.+..+.....=|..
T Consensus 72 l~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSG 129 (470)
T PTZ00142 72 LLIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSG 129 (470)
T ss_pred EEeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCC
Confidence 9999999999988 467888999999999999999999999999999988743333333
No 48
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.98 E-value=2e-09 Score=104.10 Aligned_cols=112 Identities=13% Similarity=0.235 Sum_probs=87.5
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHH---HhcCCEEE
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF---ASKADVVV 254 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el---l~~aDiV~ 254 (370)
+|||||+|.||..+|+.|...|++|.+|||++.+.. .+..... ...+++++ +.++|+|+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~-----------------~l~~~g~~~~~s~~~~~~~~~~~dvIi 64 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVK-----------------AMKEDRTTGVANLRELSQRLSAPRVVW 64 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHH-----------------HHHHcCCcccCCHHHHHhhcCCCCEEE
Confidence 799999999999999999999999999999865421 1111111 22345554 45689999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
+++|.. .++.+++ +..+.+++|.++||++.+...+...+.+.+++..+. .+|.
T Consensus 65 ~~vp~~-~~~~v~~-~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda 117 (298)
T TIGR00872 65 VMVPHG-IVDAVLE-ELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC 117 (298)
T ss_pred EEcCch-HHHHHHH-HHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence 999977 7787774 677889999999999999999999999999987776 4554
No 49
>PLN02712 arogenate dehydrogenase
Probab=98.97 E-value=9.4e-10 Score=116.99 Aligned_cols=110 Identities=22% Similarity=0.295 Sum_probs=83.0
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh-
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS- 248 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~- 248 (370)
+.++.+++|||||+|.||+.+|+.++.+|++|++||++.... . ..+.+ ...++++++.
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~-~------------------a~~~Gv~~~~~~~el~~~ 424 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSD-E------------------AQKLGVSYFSDADDLCEE 424 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHH-H------------------HHHcCCeEeCCHHHHHhc
Confidence 557889999999999999999999999999999999874210 0 01111 2357888776
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 301 (370)
.+|+|++|+|. ..+..++..-....||+|++++|++.+.-...+.+.+.+..
T Consensus 425 ~aDvVILavP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~ 476 (667)
T PLN02712 425 HPEVILLCTSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ 476 (667)
T ss_pred CCCEEEECCCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence 58999999994 67777776554557999999999999885455555555544
No 50
>PLN02858 fructose-bisphosphate aldolase
Probab=98.97 E-value=2.6e-09 Score=121.38 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=94.5
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEE
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC 255 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l 255 (370)
.++|||||+|.||.++|++|...|++|.+||+++.+.. .+..... ...+..+++++||+|++
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~-----------------~l~~~Ga~~~~s~~e~~~~aDvVi~ 386 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLV-----------------RFENAGGLAGNSPAEVAKDVDVLVI 386 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEEE
Confidence 47899999999999999999999999999999865421 1111111 24678899999999999
Q ss_pred eccCChhhhccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh--CCceEEEEec
Q 017490 256 CLSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC--GHLGGLGIDV 311 (370)
Q Consensus 256 ~lP~t~~t~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~--g~i~ga~lDV 311 (370)
|+|...+++.++ +...++.+++|.++||+|...+-..+.+.+.+.+ ..+. .+|.
T Consensus 387 ~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA 444 (1378)
T PLN02858 387 MVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA 444 (1378)
T ss_pred ecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence 999988888887 3457888999999999999999999999999988 4444 5665
No 51
>PLN02858 fructose-bisphosphate aldolase
Probab=98.96 E-value=1.7e-09 Score=122.82 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=96.9
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV 254 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~ 254 (370)
+.++||+||+|.||..||++|...|++|.+|||++.+.. .+..... ...+..++.++||+|+
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~-----------------~l~~~Ga~~~~s~~e~a~~advVi 65 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLME-----------------KFCELGGHRCDSPAEAAKDAAALV 65 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHH-----------------HHHHcCCeecCCHHHHHhcCCEEE
Confidence 457899999999999999999999999999999865421 1111111 3468999999999999
Q ss_pred EeccCChhhhccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 255 CCLSLNKQTAGIV--NKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 255 l~lP~t~~t~~li--~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
+|+|..+.++.++ ....++.+++|.++||+|+..+-..+.+.+.+.+..-....+|.
T Consensus 66 ~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378)
T PLN02858 66 VVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378)
T ss_pred EEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence 9999999988876 34678889999999999999999999999999987622236776
No 52
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.94 E-value=4.3e-09 Score=106.40 Aligned_cols=150 Identities=19% Similarity=0.247 Sum_probs=95.8
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH-----------
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----------- 246 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----------- 246 (370)
++|+|||+|.||..+|..|+..|++|++||+++..... .. .+. .. . ....++++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~--------~g~----~~-~-~e~~l~~~l~~~~~~g~l~ 68 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-IN--------RGE----IH-I-VEPDLDMVVKTAVEGGYLR 68 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HH--------CCC----CC-c-CCCCHHHHHHHHhhcCcee
Confidence 68999999999999999999999999999997654211 00 000 00 0 01123332
Q ss_pred ----HhcCCEEEEeccCC------hhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce-------EE
Q 017490 247 ----ASKADVVVCCLSLN------KQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG-------GL 307 (370)
Q Consensus 247 ----l~~aDiV~l~lP~t------~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~-------ga 307 (370)
++.||+|++|+|.. ++...+.. ....+.+++|+++|+.|.-.+-..+.+...+.+.... |.
T Consensus 69 ~~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~ 148 (415)
T PRK11064 69 ATTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGE 148 (415)
T ss_pred eecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccC
Confidence 34799999999964 22233321 3466779999999999999998899988888764221 11
Q ss_pred EEe---cCCCCCCCCCCcc---cCCCceEEccCCCCccHHHHHHHH
Q 017490 308 GID---VAWTEPFDPNDPI---LKFKNVLITPHVGGVTEHSYRSMA 347 (370)
Q Consensus 308 ~lD---V~~~EPl~~~~pL---~~~~nvilTPHia~~t~~~~~~~~ 347 (370)
+.| ++.+|-+.+...+ ...|.+ +||.++++.+++.
T Consensus 149 ~~~f~v~~~PE~~~~G~~~~~~~~~~~v-----vgG~~~~~~~~~~ 189 (415)
T PRK11064 149 QADINIAYCPERVLPGQVMVELIKNDRV-----IGGMTPVCSARAS 189 (415)
T ss_pred CCCeEEEECCCccCCCChhhhhcCCCEE-----EEeCCHHHHHHHH
Confidence 223 4667766555433 333433 2455666555443
No 53
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.93 E-value=1.9e-09 Score=103.69 Aligned_cols=110 Identities=20% Similarity=0.204 Sum_probs=87.0
Q ss_pred EEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccC
Q 017490 182 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSL 259 (370)
Q Consensus 182 IiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~ 259 (370)
|||+|.||.++|+.|...|++|.+|||+..+.. .+ .+.+ ...++.+++++||+|++|+|.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~-----------------~l-~~~g~~~~~s~~~~~~~advVil~vp~ 62 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVE-----------------EA-VAAGAQAAASPAEAAEGADRVITMLPA 62 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHH-----------------HH-HHcCCeecCCHHHHHhcCCEEEEeCCC
Confidence 689999999999999999999999999865411 11 1111 235788999999999999998
Q ss_pred ChhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 260 NKQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 260 t~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
...++.++. ...++.+++|.++||++...+-..+.+.+.+++..+. .+|.
T Consensus 63 ~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 63 GQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred hHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 777777762 4567789999999999988877788888888876665 5664
No 54
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.91 E-value=3e-09 Score=108.85 Aligned_cols=113 Identities=15% Similarity=0.235 Sum_probs=90.0
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc------cCCCCCHHHHH---hc
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE------KGCHEDIFEFA---SK 249 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~ell---~~ 249 (370)
.|||||+|.||..+|++|...|++|.+|||++.+.. .+... .....+++++. ++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~-----------------~l~~~~~~g~~~~~~~s~~e~v~~l~~ 63 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTD-----------------EFLAEHAKGKKIVGAYSIEEFVQSLER 63 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHH-----------------HHHhhccCCCCceecCCHHHHHhhcCC
Confidence 389999999999999999999999999999865421 11111 11234666665 46
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
+|+|++++|..+.++.+++ +.+..+++|.++||++....-+...+.+.+.+..+. .+|+
T Consensus 64 ~dvIil~v~~~~~v~~Vi~-~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda 122 (467)
T TIGR00873 64 PRKIMLMVKAGAPVDAVIN-QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS 122 (467)
T ss_pred CCEEEEECCCcHHHHHHHH-HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence 8999999998888888874 677889999999999999999999999999988887 4554
No 55
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.89 E-value=8.5e-09 Score=104.45 Aligned_cols=151 Identities=10% Similarity=0.071 Sum_probs=94.2
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEEe
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVCC 256 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l~ 256 (370)
.+|||||+|.||..+|..++. |++|++||++..+...-.... .+..+....++..... ...+..+.+++||++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~--~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~ 83 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGV--DVNLETTEEELREARYLKFTSEIEKIKECNFYIIT 83 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcC--CCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence 689999999999999999877 799999999865521110000 0000000011101000 122333568999999999
Q ss_pred ccCC------hhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--Cce-E-EEEecCCCCCCCCCC---
Q 017490 257 LSLN------KQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG--HLG-G-LGIDVAWTEPFDPND--- 321 (370)
Q Consensus 257 lP~t------~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g--~i~-g-a~lDV~~~EPl~~~~--- 321 (370)
+|.. ++...++. ....+.+++|.++|+.|+-.+-..+.+++.+.+. .+. + ...=+|.+||+.+..
T Consensus 84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~ 163 (425)
T PRK15182 84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKH 163 (425)
T ss_pred cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccc
Confidence 9965 33455542 3467789999999999999998888765555442 222 1 111246789987665
Q ss_pred cccCCCceEE
Q 017490 322 PILKFKNVLI 331 (370)
Q Consensus 322 pL~~~~nvil 331 (370)
.+...|+++.
T Consensus 164 ~~~~~~riv~ 173 (425)
T PRK15182 164 RLTNIKKITS 173 (425)
T ss_pred cccCCCeEEE
Confidence 4455566644
No 56
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.88 E-value=5.3e-09 Score=102.53 Aligned_cols=164 Identities=21% Similarity=0.256 Sum_probs=106.4
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccc----cccccC-CCCCHHHHHhcCCE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD----LVDEKG-CHEDIFEFASKADV 252 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~l~ell~~aDi 252 (370)
.++||+|||.||.++|-.+...|++|+|||.+..+-.. .+....+.. +-..++ .+.... .+++--+.++.||+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~-ln~G~~~i~-e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv 87 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDK-LNRGESYIE-EPDLDEVVKEAVESGKLRATTDPEELKECDV 87 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHH-HhCCcceee-cCcHHHHHHHHHhcCCceEecChhhcccCCE
Confidence 79999999999999999999999999999987654211 111011111 000011 111111 22222344569999
Q ss_pred EEEeccCC------hhhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC--CceEEEEec---CCCCCCCC
Q 017490 253 VVCCLSLN------KQTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG--HLGGLGIDV---AWTEPFDP 319 (370)
Q Consensus 253 V~l~lP~t------~~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g--~i~ga~lDV---~~~EPl~~ 319 (370)
+++|+|.. |+...+.+ +..-+.||+|.++|--|.-.+-.++.++..|.+. .+. .+-|. |.+|...|
T Consensus 88 ~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 88 FIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 99999932 12222333 2355679999999999999999999999988875 333 34565 47888777
Q ss_pred CCcccCCCceEEcc-CCCCccHHHHHHHH
Q 017490 320 NDPILKFKNVLITP-HVGGVTEHSYRSMA 347 (370)
Q Consensus 320 ~~pL~~~~nvilTP-Hia~~t~~~~~~~~ 347 (370)
++.+.++-| .| =+||.|+.+.+.+.
T Consensus 167 G~~~~el~~---~~kVIgG~tp~~~e~a~ 192 (436)
T COG0677 167 GNVLKELVN---NPKVIGGVTPKCAELAA 192 (436)
T ss_pred Cchhhhhhc---CCceeecCCHHHHHHHH
Confidence 877776544 34 36788887765443
No 57
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.83 E-value=1.6e-08 Score=102.87 Aligned_cols=141 Identities=26% Similarity=0.405 Sum_probs=94.2
Q ss_pred ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEE
Q 017490 178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVV 254 (370)
Q Consensus 178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~ 254 (370)
++|+||| +|.||+.+|+.++..|++|.+++++..... +...+.+ ...+.++.+.+||+|+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~-----------------~~a~~~gv~~~~~~~e~~~~aDvVI 63 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGK-----------------EVAKELGVEYANDNIDAAKDADIVI 63 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHH-----------------HHHHHcCCeeccCHHHHhccCCEEE
Confidence 3799998 899999999999999999999998753310 0111111 2346778899999999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCC-CCCcccCCCceEEcc
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD-PNDPILKFKNVLITP 333 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~-~~~pL~~~~nvilTP 333 (370)
+|+|. ..+..++ .+....+++|+++++++.......+++.+.+..+ . .+...-|+. +..+++.-..++++|
T Consensus 64 lavp~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~-----~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 64 ISVPI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEG-V-----EILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred EecCH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCC-C-----EEEEcCCCCCCCCcccCCCEEEEec
Confidence 99996 3455555 4566778999999999986555555555554432 1 122223331 234577778899999
Q ss_pred CCCCccHHHHH
Q 017490 334 HVGGVTEHSYR 344 (370)
Q Consensus 334 Hia~~t~~~~~ 344 (370)
+- +.+.+...
T Consensus 136 ~~-~~~~~~~~ 145 (437)
T PRK08655 136 TE-KRSNPWFD 145 (437)
T ss_pred CC-CCCHHHHH
Confidence 64 23444433
No 58
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.79 E-value=2.8e-08 Score=96.43 Aligned_cols=145 Identities=21% Similarity=0.311 Sum_probs=88.5
Q ss_pred CceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcC
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA 250 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a 250 (370)
.++|+|||+|.||..+|+.++..|. +|++||++...... ..+.+ ...++++.+++|
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~------------------a~~~g~~~~~~~~~~~~~~~a 67 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRAR------------------ARELGLGDRVTTSAAEAVKGA 67 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHH------------------HHhCCCCceecCCHHHHhcCC
Confidence 4689999999999999999998885 89999997543110 01111 124677888999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecC---CCC---CCCCCCccc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA---WTE---PFDPNDPIL 324 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~---~~E---Pl~~~~pL~ 324 (370)
|+|++|+|.. .+..++ .+....++++.++++++....-..+++.+.+.. .+. .+..+ ..| |-....+|+
T Consensus 68 DvViiavp~~-~~~~v~-~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~ 142 (307)
T PRK07502 68 DLVILCVPVG-ASGAVA-AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELF 142 (307)
T ss_pred CEEEECCCHH-HHHHHH-HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHH
Confidence 9999999963 333333 345567899999999976542222223222221 222 23322 111 111123566
Q ss_pred CCCceEEccCCCCccHHHHHH
Q 017490 325 KFKNVLITPHVGGVTEHSYRS 345 (370)
Q Consensus 325 ~~~nvilTPHia~~t~~~~~~ 345 (370)
.-.+++++|+-+ .+.++.+.
T Consensus 143 ~g~~~~l~~~~~-~~~~~~~~ 162 (307)
T PRK07502 143 ENRWCILTPPEG-TDPAAVAR 162 (307)
T ss_pred CCCeEEEeCCCC-CCHHHHHH
Confidence 667789999644 34444443
No 59
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.78 E-value=1.5e-08 Score=98.38 Aligned_cols=83 Identities=23% Similarity=0.293 Sum_probs=67.9
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
.+++|||||+|.+|+.+|++|...|++|.+|+|+.. .+++++++++|+|++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------------------------~~~~~~~~~advvi~ 53 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------------------------LSLAAVLADADVIVS 53 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------------------------CCHHHHHhcCCEEEE
Confidence 467899999999999999999999999999998632 257788899999999
Q ss_pred eccCChhhhcccCHHHHh-cCCCCcEEEEcCCCcc
Q 017490 256 CLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGL 289 (370)
Q Consensus 256 ~lP~t~~t~~li~~~~l~-~mk~gailIN~sRg~~ 289 (370)
++|. ...+.+++. ... .+++++++|++++|-.
T Consensus 54 ~vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi~ 86 (308)
T PRK14619 54 AVSM-KGVRPVAEQ-VQALNLPPETIIVTATKGLD 86 (308)
T ss_pred ECCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCccc
Confidence 9997 577777632 223 4789999999988543
No 60
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.78 E-value=3.4e-08 Score=95.27 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=76.5
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cc---hhhhccccccc-cc-ccc--CCCCCHHHHHhc
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SS---ALAVKNGIIDD-LV-DEK--GCHEDIFEFASK 249 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~---~~~~~~~~~~~-~~-~~~--~~~~~l~ell~~ 249 (370)
++|||||+|.||..+|+.+...|++|++||++.......... .. .+. ..+...+ .. ... ....+..+.++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLV-KKGKMSQEEADATLGRIRCTTNLEELRD 83 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhceEeeCCHHHhCC
Confidence 589999999999999999999999999999876442100000 00 000 0000000 00 000 112222356899
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~ 300 (370)
||+|+.|+|..++.+..+-++..+.++++++|+ |+|.-. ...+.+.+.
T Consensus 84 aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~ 132 (295)
T PLN02545 84 ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ 132 (295)
T ss_pred CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence 999999999999888877667777799999886 777664 445556554
No 61
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.78 E-value=1.2e-07 Score=94.75 Aligned_cols=118 Identities=15% Similarity=0.176 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccc
Q 017490 139 SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVS 217 (370)
Q Consensus 139 ~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~ 217 (370)
..++-.+-.++..+|+... ...+.. .....++|+||| +|.||+.+|+.++..|+.|.+||++..
T Consensus 69 ~~~~~i~~~i~~~s~~~q~------~~~~~~---~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------ 133 (374)
T PRK11199 69 DLIEDVLRRVMRESYSSEN------DKGFKT---LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------ 133 (374)
T ss_pred HHHHHHHHHHHHHHHHHhH------Hhcccc---cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------
Confidence 3455555556666554321 122211 112458999999 999999999999999999999997421
Q ss_pred cccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 017490 218 CQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH 297 (370)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~ 297 (370)
.+.++++++||+|++|+|... +..++. + +..+++|+++++++.....-.+++.+
T Consensus 134 -----------------------~~~~~~~~~aDlVilavP~~~-~~~~~~-~-l~~l~~~~iv~Dv~SvK~~~~~~~~~ 187 (374)
T PRK11199 134 -----------------------DRAEDILADAGMVIVSVPIHL-TEEVIA-R-LPPLPEDCILVDLTSVKNAPLQAMLA 187 (374)
T ss_pred -----------------------hhHHHHHhcCCEEEEeCcHHH-HHHHHH-H-HhCCCCCcEEEECCCccHHHHHHHHH
Confidence 245677889999999999654 455552 3 44489999999997754332334433
No 62
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.76 E-value=7.3e-08 Score=96.03 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=73.8
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV 252 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi 252 (370)
.+.+++|.|+|+|.+|+.+++.++.+|++|.++|++..+....... + ...+. ......++.+.++++|+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~---~-------g~~v~~~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAE---F-------GGRIHTRYSNAYEIEDAVKRADL 233 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHh---c-------CceeEeccCCHHHHHHHHccCCE
Confidence 3577889999999999999999999999999999875431100000 0 00000 00112457788899999
Q ss_pred EEEeccCC-hhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 253 VVCCLSLN-KQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 253 V~l~lP~t-~~t~~li~~~~l~~mk~gailIN~s 285 (370)
|+.+++.+ ..+..+++++.++.||+|+++||+|
T Consensus 234 VI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 234 LIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred EEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 99998653 2345688999999999999999997
No 63
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.75 E-value=1.4e-07 Score=93.83 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=83.2
Q ss_pred cCceEEEEec-CchhHHHHHHhcc-CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~-~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
...+|+|||+ |.||+.+|+.++. +|.+|++||+.... ..++++.+++||+|
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~---------------------------~~~~~~~v~~aDlV 55 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG---------------------------SLDPATLLQRADVL 55 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc---------------------------cCCHHHHhcCCCEE
Confidence 4579999999 9999999999985 59999999974211 13567889999999
Q ss_pred EEeccCChhhhcccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC--CCCCcccCCCce
Q 017490 254 VCCLSLNKQTAGIVNK--SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF--DPNDPILKFKNV 329 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~--~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl--~~~~pL~~~~nv 329 (370)
++|+|.. .+..++.+ .....+|+|+++++++.-.. ..++++..... ++-..-|+ +..+.++.--++
T Consensus 56 ilavPv~-~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~ 125 (370)
T PRK08818 56 IFSAPIR-HTAALIEEYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVM 125 (370)
T ss_pred EEeCCHH-HHHHHHHHHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeE
Confidence 9999954 44555432 11234899999999987652 22222222211 23334454 223467777788
Q ss_pred EEccC
Q 017490 330 LITPH 334 (370)
Q Consensus 330 ilTPH 334 (370)
++||.
T Consensus 126 iltp~ 130 (370)
T PRK08818 126 VVCEA 130 (370)
T ss_pred EEeCC
Confidence 99996
No 64
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.74 E-value=4e-08 Score=94.13 Aligned_cols=142 Identities=18% Similarity=0.228 Sum_probs=84.7
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEecc
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 258 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 258 (370)
+|||||+|.||..+|+.|+..|++|++||++......... ...... ...+. +.+++||+|++|+|
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~------------~g~~~~--~~~~~-~~~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE------------RGLVDE--ASTDL-SLLKDCDLVILALP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH------------CCCccc--ccCCH-hHhcCCCEEEEcCC
Confidence 7999999999999999999999999999987543110000 000100 11233 46789999999999
Q ss_pred CChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecC---CCCCC---CCCCcccCCCceEEc
Q 017490 259 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVA---WTEPF---DPNDPILKFKNVLIT 332 (370)
Q Consensus 259 ~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~---~~EPl---~~~~pL~~~~nvilT 332 (370)
... ...++ ++....+++++++++++.-.. ..++++...... .+... ..|.- ....-|+.-.++++|
T Consensus 67 ~~~-~~~~~-~~l~~~l~~~~ii~d~~Svk~----~~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~ 138 (279)
T PRK07417 67 IGL-LLPPS-EQLIPALPPEAIVTDVGSVKA----PIVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLT 138 (279)
T ss_pred HHH-HHHHH-HHHHHhCCCCcEEEeCcchHH----HHHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEc
Confidence 543 33333 456677899999999987543 233333332212 12222 11110 001125667788999
Q ss_pred cCCCCccHHHHH
Q 017490 333 PHVGGVTEHSYR 344 (370)
Q Consensus 333 PHia~~t~~~~~ 344 (370)
|+-.. +++..+
T Consensus 139 p~~~~-~~~~~~ 149 (279)
T PRK07417 139 PTENT-DLNALA 149 (279)
T ss_pred cCCCC-CHHHHH
Confidence 97543 344433
No 65
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.73 E-value=1.9e-08 Score=97.95 Aligned_cols=95 Identities=26% Similarity=0.346 Sum_probs=67.5
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV 253 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV 253 (370)
|+||+|||||+|+||+++|+.|+.+|++|+++++...+... .. .+.+ ...+..+++++||+|
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~----------------~a-~~~Gv~~~s~~ea~~~ADiV 63 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWK----------------KA-TEDGFKVGTVEEAIPQADLI 63 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHH----------------HH-HHCCCEECCHHHHHhcCCEE
Confidence 57999999999999999999999999998876554322100 00 1112 224678889999999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
++++|...+ ...+.++....|++|. +|-++-|=
T Consensus 64 vLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~ 96 (314)
T TIGR00465 64 MNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGF 96 (314)
T ss_pred EEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCc
Confidence 999995533 3344456667788886 77777664
No 66
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.72 E-value=8e-08 Score=87.75 Aligned_cols=110 Identities=25% Similarity=0.325 Sum_probs=81.9
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh-c
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS-K 249 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~-~ 249 (370)
+.+++||+++|+|+|+||+.+|+.|..+|++|+++|++..... ......+ ...+.++++. +
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~-----------------~~~~~~g~~~v~~~~l~~~~ 85 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVA-----------------RAAELFGATVVAPEEIYSVD 85 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH-----------------HHHHHcCCEEEcchhhcccc
Confidence 4679999999999999999999999999999999998754310 0111111 1123345554 7
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
||+++.|.. .++|+++.++.|+ ..+++.-+.+.+-| ..-.+.|++..+.
T Consensus 86 ~Dv~vp~A~-----~~~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 86 ADVFAPCAL-----GGVINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred CCEEEeccc-----ccccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 999986644 3589999999997 45788888888866 6677888888776
No 67
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.72 E-value=8.8e-08 Score=96.73 Aligned_cols=161 Identities=18% Similarity=0.251 Sum_probs=95.2
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc---ccC---CCCCHHHHHhcCCE
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKG---CHEDIFEFASKADV 252 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~l~ell~~aDi 252 (370)
+|||||+|.||..+|..|...|++|++||++..+...-.... .+..+..+.+... ..+ ...++++++++||+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~--~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~adv 79 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGK--SPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADV 79 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCC--CCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCE
Confidence 699999999999999999999999999998765421100000 0000000000000 001 22467888999999
Q ss_pred EEEeccCChh------hhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-HhC-CceEEEEec---CCCCCCCC
Q 017490 253 VVCCLSLNKQ------TAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYL-ECG-HLGGLGIDV---AWTEPFDP 319 (370)
Q Consensus 253 V~l~lP~t~~------t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL-~~g-~i~ga~lDV---~~~EPl~~ 319 (370)
|++|+|.... ...+.. ....+.+++|.++|++|.-.+-..+.+.+.+ ++. .+. .+.|+ +.+|...+
T Consensus 80 vii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 80 IIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLRE 158 (411)
T ss_pred EEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCC
Confidence 9999996532 112221 3456678999999999987777777776544 441 111 13343 35555444
Q ss_pred CC---cccCCCceEEccCCCCccHHHHHHHH
Q 017490 320 ND---PILKFKNVLITPHVGGVTEHSYRSMA 347 (370)
Q Consensus 320 ~~---pL~~~~nvilTPHia~~t~~~~~~~~ 347 (370)
.. .++..+.+++. .++++.+++.
T Consensus 159 G~~~~~~~~~~~iv~G-----~~~~~~~~~~ 184 (411)
T TIGR03026 159 GNAVHDLLNPDRIVGG-----ETEEAGEAVA 184 (411)
T ss_pred CChhhhhcCCCEEEEe-----CCHHHHHHHH
Confidence 33 34555666665 2555544433
No 68
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.71 E-value=1.4e-08 Score=101.95 Aligned_cols=102 Identities=25% Similarity=0.267 Sum_probs=71.1
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a 250 (370)
...|+||+|+|||+|.+|+.-|..|+..|.+|++--|...-.... .++ +.+.+.+ ...++++++++|
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~----~s~--------~kA~~dGF~v~~~~Ea~~~A 98 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR----ASW--------RKATENGFKVGTYEELIPQA 98 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEecccccccccc----chH--------HHHHhcCCccCCHHHHHHhC
Confidence 357999999999999999988888888888887433321000000 000 0000112 346799999999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|++.+|.+ + .+.+..+.++.||+|++|. .|.|=
T Consensus 99 DvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF 133 (487)
T PRK05225 99 DLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF 133 (487)
T ss_pred CEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence 9999999988 3 6677799999999999875 34443
No 69
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.70 E-value=1e-07 Score=91.58 Aligned_cols=131 Identities=11% Similarity=0.115 Sum_probs=81.7
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhh---hccccccc-----cccccCCCCCHHHHHhc
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALA---VKNGIIDD-----LVDEKGCHEDIFEFASK 249 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~l~ell~~ 249 (370)
++|+|||+|.||..+|..+...|++|++||+++.............. ...+.+.+ .........++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 47999999999999999999999999999997654211000000000 00000000 00000013577889999
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEEecC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDVA 312 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~ 312 (370)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+ ..+.+.++. .-+..++..|
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 99999999987766554444566778999876 78887554 456555532 3334566666
No 70
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.69 E-value=1.4e-08 Score=88.79 Aligned_cols=94 Identities=30% Similarity=0.410 Sum_probs=64.8
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVV 253 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV 253 (370)
|+||+|+|||||.-|++.|..|+..|++|++-.|..++.. +.+.+.+ ...+..|..++||+|
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~-----------------~~A~~~Gf~v~~~~eAv~~aDvV 64 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASW-----------------EKAKADGFEVMSVAEAVKKADVV 64 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHH-----------------HHHHHTT-ECCEHHHHHHC-SEE
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCH-----------------HHHHHCCCeeccHHHHHhhCCEE
Confidence 6799999999999999999999999999998887654210 1122223 456899999999999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg 287 (370)
++.+|.. .-..+..++....||+|+.|+ .+.|
T Consensus 65 ~~L~PD~-~q~~vy~~~I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 65 MLLLPDE-VQPEVYEEEIAPNLKPGATLV-FAHG 96 (165)
T ss_dssp EE-S-HH-HHHHHHHHHHHHHS-TT-EEE-ESSS
T ss_pred EEeCChH-HHHHHHHHHHHhhCCCCCEEE-eCCc
Confidence 9999954 334466677888999999776 3344
No 71
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.67 E-value=9.1e-08 Score=95.91 Aligned_cols=144 Identities=13% Similarity=0.084 Sum_probs=89.0
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccC---CCCCHHHHHhcCCEEE
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKG---CHEDIFEFASKADVVV 254 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~l~ell~~aDiV~ 254 (370)
+|+|||+|.||..+|..++ .|++|++||++..+..........+ .+..+.+... ..+ ...+..+.++.||+|+
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~--~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vi 78 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPI--VDKEIQQFLQSDKIHFNATLDKNEAYRDADYVI 78 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCC--CCcCHHHHHHhCCCcEEEecchhhhhcCCCEEE
Confidence 6999999999999997776 4999999999865521111000000 0000011110 111 1123567789999999
Q ss_pred EeccCChhh-------hcccCH-HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCc---c
Q 017490 255 CCLSLNKQT-------AGIVNK-SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDP---I 323 (370)
Q Consensus 255 l~lP~t~~t-------~~li~~-~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~p---L 323 (370)
+|+|...+- ..+... +.+..+++|.++|+.|.-++-..+.+.+.+.+..+ +|.+|.+.+.+. +
T Consensus 79 i~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~ 152 (388)
T PRK15057 79 IATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDN 152 (388)
T ss_pred EeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccc
Confidence 999965211 111111 22334799999999999999999999988876433 258888766654 3
Q ss_pred cCCCceEE
Q 017490 324 LKFKNVLI 331 (370)
Q Consensus 324 ~~~~nvil 331 (370)
+..|+|++
T Consensus 153 ~~p~rvv~ 160 (388)
T PRK15057 153 LHPSRIVI 160 (388)
T ss_pred cCCCEEEE
Confidence 44444443
No 72
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.64 E-value=1.8e-07 Score=92.92 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=89.4
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 257 (370)
++|+|||+|.||.++|+.++..|++|.+|+++.......... + ...... ...++++++++||+|++|+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~--------~--~~~~~~--~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARAL--------G--FGVIDE--LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHh--------c--CCCCcc--cccCHHHHhcCCCEEEEeC
Confidence 479999999999999999999999888888765431100000 0 000000 1246788899999999999
Q ss_pred cCChhhhcccCHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCC---------CCcccCCC
Q 017490 258 SLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDP---------NDPILKFK 327 (370)
Q Consensus 258 P~t~~t~~li~~~~l~-~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~---------~~pL~~~~ 327 (370)
|. ..+..++. +... .+++++++++++.-..-..+++.+.+. .... .+..+ |++- ...|+.-.
T Consensus 69 P~-~~~~~vl~-~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~ 140 (359)
T PRK06545 69 PV-DATAALLA-ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENA 140 (359)
T ss_pred CH-HHHHHHHH-HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCC
Confidence 96 45666663 3333 488999999998876433333333321 1222 33332 4321 22466666
Q ss_pred ceEEccCCCCccHHHHH
Q 017490 328 NVLITPHVGGVTEHSYR 344 (370)
Q Consensus 328 nvilTPHia~~t~~~~~ 344 (370)
..++||+-.. +.+..+
T Consensus 141 ~~il~~~~~~-~~~~~~ 156 (359)
T PRK06545 141 PWVLTPDDHT-DPDAVA 156 (359)
T ss_pred cEEEecCCCC-CHHHHH
Confidence 7889996432 344443
No 73
>PLN02712 arogenate dehydrogenase
Probab=98.64 E-value=3.5e-08 Score=105.09 Aligned_cols=95 Identities=27% Similarity=0.382 Sum_probs=71.1
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH-hcC
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKA 250 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~a 250 (370)
.-+.++|||||+|.||+.+|+.++.+|++|++||++.... ...+.+ ...++++++ .++
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~-------------------~A~~~Gv~~~~d~~e~~~~~a 109 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSL-------------------AARSLGVSFFLDPHDLCERHP 109 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHH-------------------HHHHcCCEEeCCHHHHhhcCC
Confidence 3445789999999999999999999999999999873221 011111 234677755 569
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|++|+|. ..+..++..-.+..+++|++++|++.-.
T Consensus 110 DvViLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK 146 (667)
T PLN02712 110 DVILLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK 146 (667)
T ss_pred CEEEEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc
Confidence 999999995 5677777654446799999999997544
No 74
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.64 E-value=9.9e-08 Score=91.87 Aligned_cols=132 Identities=21% Similarity=0.268 Sum_probs=90.6
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||+|+|||.| .||+++|.+|...|++|.+++++. .++.++.++|
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t------------------------------~~l~e~~~~A 203 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS------------------------------TDAKALCRQA 203 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC------------------------------CCHHHHHhcC
Confidence 468999999999996 999999999999999999997642 2577889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+++++.. +++.... +|+|+++||+|--.+.+ +|. ....-||-..+- . -.--.
T Consensus 204 DIVIsavg~~----~~v~~~~---ik~GaiVIDvgin~~~~---------~g~-~kl~GDvdf~~~-------~-~~a~~ 258 (301)
T PRK14194 204 DIVVAAVGRP----RLIDADW---LKPGAVVIDVGINRIDD---------DGR-SRLVGDVDFDSA-------L-PVVSA 258 (301)
T ss_pred CEEEEecCCh----hcccHhh---ccCCcEEEEecccccCC---------CCC-cceecccchHHH-------H-hhcce
Confidence 9999999864 3455544 89999999998655321 131 013456632111 1 11245
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQLH 358 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~~~ 358 (370)
+||-=||.-+-+...+.+.+++..+++.
T Consensus 259 iTPVPGGVGp~Tva~L~~N~~~a~~~~~ 286 (301)
T PRK14194 259 ITPVPGGVGPMTIAFLMKNTVTAARLQA 286 (301)
T ss_pred ecCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 7886667655555445555555444444
No 75
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.62 E-value=2.4e-07 Score=87.74 Aligned_cols=101 Identities=19% Similarity=0.317 Sum_probs=73.5
Q ss_pred ceEEEEecCchhHHHHHHhccCCC----EEEEE-cCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcC
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGV----KIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKA 250 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~----~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~a 250 (370)
.+|||||+|.||.++++.|...|+ +|+++ ||+..+.. ...+.+ ...+..+++++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~------------------~~~~~g~~~~~~~~e~~~~a 62 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRD------------------VFQSLGVKTAASNTEVVKSS 62 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH------------------HHHHcCCEEeCChHHHHhcC
Confidence 379999999999999999998888 89999 87654310 011112 235677888999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
|+|++|+| ....+.++. +....++++.++|.+.-| +..+.+.+.+.
T Consensus 63 DvVil~v~-~~~~~~vl~-~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 63 DVIILAVK-PQVVKDVLT-ELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred CEEEEEEC-cHHHHHHHH-HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 99999997 556666663 455667899999988655 46666766554
No 76
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.62 E-value=2.9e-07 Score=89.93 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=81.6
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhhh--cccccccc-ccccCCCCCHHHHHhcCCEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAV--KNGIIDDL-VDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~~--~~~~~~~~-~~~~~~~~~l~ell~~aDiV 253 (370)
++|||||.|.||..+|..+...|++|..||+++......... ...+.. ..+..... ........++++.++.||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 689999999999999999999999999999976532110000 000000 00000000 00111235788999999999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
+-++|.+.+.+.-+-++.-+.+++++ +|.++.. .+...++.+.++
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~ 132 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDA-IIASSTS-GLLPTDFYARAT 132 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCC-ccCHHHHHHhcC
Confidence 99999999988877778888899998 5555554 356777777774
No 77
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.61 E-value=1.9e-08 Score=80.42 Aligned_cols=89 Identities=33% Similarity=0.484 Sum_probs=62.4
Q ss_pred eEEEEecCchhHHHHHHhccCC---CEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhcCC
Q 017490 179 TVFILGFGNIGVELAKRLRPFG---VKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKAD 251 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G---~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aD 251 (370)
||||||+|+||..+++.+...| .+|. +++|++++.. ++..+.+ ...+..+++++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAA-----------------ELAKEYGVQATADDNEEAAQEAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHH-----------------HHHHHCTTEEESEEHHHHHHHTS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHH-----------------HHHHhhccccccCChHHhhccCC
Confidence 6999999999999999999999 8999 5588765421 1222222 1226889999999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg 287 (370)
+|++++|.. ....++. +. ....++.++|++.-|
T Consensus 64 vvilav~p~-~~~~v~~-~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 64 VVILAVKPQ-QLPEVLS-EI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp EEEE-S-GG-GHHHHHH-HH-HHHHTTSEEEEESTT
T ss_pred EEEEEECHH-HHHHHHH-HH-hhccCCCEEEEeCCC
Confidence 999999943 3333332 23 556789999988654
No 78
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.60 E-value=3e-07 Score=87.80 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=66.4
Q ss_pred eEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhcCCEE
Q 017490 179 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASKADVV 253 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~aDiV 253 (370)
+|+|||+|.||+.+|+.++..|. +|++||++...... ..+.+ ...+.+++. +||+|
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~------------------~~~~g~~~~~~~~~~~~-~aD~V 62 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKK------------------ALELGLVDEIVSFEELK-KCDVI 62 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHH------------------HHHCCCCcccCCHHHHh-cCCEE
Confidence 79999999999999999988775 79999987543110 00111 123566655 59999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 301 (370)
++|+|... +..++ .+..+ +++++++++++.- ...+.+.+..
T Consensus 63 ilavp~~~-~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275)
T PRK08507 63 FLAIPVDA-IIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPK 103 (275)
T ss_pred EEeCcHHH-HHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence 99999643 44444 34555 8999999997552 4455666654
No 79
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.59 E-value=1.8e-07 Score=81.02 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=79.1
Q ss_pred cccCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccc--cCCCCCHHHHHhcC
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KGCHEDIFEFASKA 250 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~a 250 (370)
.+.+++++|+|+|.||+.+++.+...| .+|.++||+..+..... ...... .....+.+++++++
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 82 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALA-------------ERFGELGIAIAYLDLEELLAEA 82 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH-------------HHHhhcccceeecchhhccccC
Confidence 467899999999999999999999886 78999998765421100 000000 01234677778999
Q ss_pred CEEEEeccCChh-hhc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 251 DVVVCCLSLNKQ-TAG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 251 DiV~l~lP~t~~-t~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
|+|++++|.... ... .+... .+++|.+++|++..+... .+.+.+++..+.
T Consensus 83 Dvvi~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~ 134 (155)
T cd01065 83 DLIINTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALGAK 134 (155)
T ss_pred CEEEeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence 999999997653 222 23322 368999999998875443 888888876553
No 80
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.59 E-value=2.9e-07 Score=88.20 Aligned_cols=139 Identities=21% Similarity=0.316 Sum_probs=86.1
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC-HHHHHhcCCEEEE
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED-IFEFASKADVVVC 255 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV~l 255 (370)
-++|+|+|+|.||+.+|+.++..|..|.+++++.......... . ....++. ..+ ..+.+..+|+|++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~--~--------lgv~d~~--~~~~~~~~~~~aD~Viv 70 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL--E--------LGVIDEL--TVAGLAEAAAEADLVIV 70 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh--h--------cCccccc--ccchhhhhcccCCEEEE
Confidence 3689999999999999999999999875555443321000000 0 0011110 122 2567788999999
Q ss_pred eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCC---CCCcccCCCceEEc
Q 017490 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFD---PNDPILKFKNVLIT 332 (370)
Q Consensus 256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~---~~~pL~~~~nvilT 332 (370)
++|-. .|..++. +....+|+|+++++++.-.---.+++.+.+.++. .+...-|+- ...+++.--.+++|
T Consensus 71 avPi~-~~~~~l~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vlt 142 (279)
T COG0287 71 AVPIE-ATEEVLK-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLT 142 (279)
T ss_pred eccHH-HHHHHHH-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEc
Confidence 99953 5555553 3444799999999998866544455555443321 222333441 24467777779999
Q ss_pred cCC
Q 017490 333 PHV 335 (370)
Q Consensus 333 PHi 335 (370)
|.-
T Consensus 143 p~~ 145 (279)
T COG0287 143 PSE 145 (279)
T ss_pred CCC
Confidence 953
No 81
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.57 E-value=1.5e-07 Score=91.27 Aligned_cols=104 Identities=24% Similarity=0.357 Sum_probs=82.2
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
.-+.||++.|.|||-+|+-+|.++++.|++|++.+..|-+... ..-.......+++....+|+
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~Ale-----------------A~MdGf~V~~m~~Aa~~gDi 267 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALE-----------------AAMDGFRVMTMEEAAKTGDI 267 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHH-----------------HhhcCcEEEEhHHhhhcCCE
Confidence 3589999999999999999999999999999999876544210 11011134578899999999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAH 297 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~ 297 (370)
++.+.- .+++|..+.|..||+|+++-|.+.-.. ||.+.|.+
T Consensus 268 fiT~TG----nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 268 FVTATG----NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred EEEccC----CcCccCHHHHHhccCCeEEecccccceeccHHHHHH
Confidence 998753 678999999999999999999987665 66666554
No 82
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.57 E-value=4.8e-07 Score=86.99 Aligned_cols=157 Identities=15% Similarity=0.134 Sum_probs=91.7
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc---cchhhhccccc-cc-----cccccCCCCCHHHHHh
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGII-DD-----LVDEKGCHEDIFEFAS 248 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~---~~~~~~~~~~~-~~-----~~~~~~~~~~l~ell~ 248 (370)
++|+|||.|.||..+|..+...|++|+.||++.......... ........... .+ .........++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 589999999999999999998999999999876431110000 00000000000 00 0000002357888899
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCc
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 328 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n 328 (370)
.||+|+.++|...+.+.-+-++..+.++++++|+..+.+ +....+.+.++.. -+..++-. -+|.+..+.
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~-~r~vg~Hf--------~~p~~~~~l 152 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRP-EKFLALHF--------ANEIWKNNT 152 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCc-ccEEEEcC--------CCCCCcCCe
Confidence 999999999976554443334555678889988433332 3445666666432 23334322 234556788
Q ss_pred eEEccCCCCccHHHHHHH
Q 017490 329 VLITPHVGGVTEHSYRSM 346 (370)
Q Consensus 329 vilTPHia~~t~~~~~~~ 346 (370)
|.+.|+-. .+++..+.+
T Consensus 153 vevv~~~~-t~~~~~~~~ 169 (287)
T PRK08293 153 AEIMGHPG-TDPEVFDTV 169 (287)
T ss_pred EEEeCCCC-CCHHHHHHH
Confidence 88888644 344444433
No 83
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.56 E-value=1.1e-07 Score=85.75 Aligned_cols=152 Identities=20% Similarity=0.232 Sum_probs=81.6
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccccc---C---CCCCHHHHHhcCC
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK---G---CHEDIFEFASKAD 251 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~l~ell~~aD 251 (370)
++|+|+|+|.+|..+|..++..|++|++||.+......-... ..+..+..++++..+. + ...+.++.+.+||
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g--~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad 78 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNG--ELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD 78 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTT--SSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhc--cccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence 589999999999999999999999999999876532110000 0011111111222211 1 2357788899999
Q ss_pred EEEEeccCChhhhcccC--------HHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHhCCceEEEEe-cCCCCCCCCCC
Q 017490 252 VVVCCLSLNKQTAGIVN--------KSFLSSMKKGSLLVNIARGGLLDYEAIA-HYLECGHLGGLGID-VAWTEPFDPND 321 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~--------~~~l~~mk~gailIN~sRg~~vd~~aL~-~aL~~g~i~ga~lD-V~~~EPl~~~~ 321 (370)
++++|+|......+-.| ....+.++++.++|.-|.-.+-..+.++ ..|++....+.-++ +|.+|-+.+.+
T Consensus 79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~ 158 (185)
T PF03721_consen 79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGR 158 (185)
T ss_dssp EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTS
T ss_pred eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCC
Confidence 99999984332222222 2455668999999999999998888555 44443322111111 26788777665
Q ss_pred c---ccCCCceEE
Q 017490 322 P---ILKFKNVLI 331 (370)
Q Consensus 322 p---L~~~~nvil 331 (370)
. +...|+|++
T Consensus 159 a~~d~~~~~rvV~ 171 (185)
T PF03721_consen 159 AIEDFRNPPRVVG 171 (185)
T ss_dssp HHHHHHSSSEEEE
T ss_pred cchhccCCCEEEE
Confidence 4 455677665
No 84
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.52 E-value=5.7e-07 Score=86.59 Aligned_cols=131 Identities=16% Similarity=0.157 Sum_probs=78.6
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchh-h-hccccccc-----cccccCCCCCHHHHHhc
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL-A-VKNGIIDD-----LVDEKGCHEDIFEFASK 249 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~-~-~~~~~~~~-----~~~~~~~~~~l~ell~~ 249 (370)
++|+|||+|.||..+|..+...|++|++||++.......... ...+ . +..+.... .........+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 579999999999999999999999999999976532110000 0000 0 00000000 000001124554 4789
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 313 (370)
||+|+.++|...+.+..+-++..+.++++++|+ |+|.-. ...+.+.+.. .-+..++-.+.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~-~~r~~g~h~~~ 144 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDR-PERFIGIHFMN 144 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCC-cccEEEeeccC
Confidence 999999999876655444356667789999998 666544 3466666542 12223555555
No 85
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.52 E-value=3.6e-07 Score=81.21 Aligned_cols=89 Identities=24% Similarity=0.371 Sum_probs=73.5
Q ss_pred ccccCceEEEEecCch-hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490 173 ETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 251 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 251 (370)
..+.|+++.|||.|.+ |..+|+.|...|++|.+.+|+. .++.+.+.++|
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------------------------~~l~~~l~~aD 89 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------------------------KNLKEHTKQAD 89 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------------------------hhHHHHHhhCC
Confidence 4689999999999986 8989999999999999988752 25678899999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
+|+.+++.. + +++++. ++++.++||+|...-+| ..+|++.
T Consensus 90 iVIsat~~~---~-ii~~~~---~~~~~viIDla~prdvd-------~~~~~~~ 129 (168)
T cd01080 90 IVIVAVGKP---G-LVKGDM---VKPGAVVIDVGINRVPD-------KSGGKLV 129 (168)
T ss_pred EEEEcCCCC---c-eecHHH---ccCCeEEEEccCCCccc-------ccCCCee
Confidence 999998743 2 688775 57899999999998887 4555554
No 86
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.51 E-value=3.6e-07 Score=87.47 Aligned_cols=124 Identities=23% Similarity=0.306 Sum_probs=87.6
Q ss_pred cccccCceEEEEecCch-hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||.|.+ |+++|..|...|++|+++... ..++.+.+++|
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~------------------------------t~~l~~~~~~A 202 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK------------------------------TRDLAAHTRQA 202 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC------------------------------CCCHHHHhhhC
Confidence 46799999999999999 999999999999999987532 13688899999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|++++| +.++++.+ .+|+|+++||+|.-.+. +|++ .-||-..+- ..---.
T Consensus 203 DIVV~avG----~~~~i~~~---~ik~gavVIDVGin~~~----------~gkl---~GDVd~~~v--------~~~a~~ 254 (285)
T PRK14189 203 DIVVAAVG----KRNVLTAD---MVKPGATVIDVGMNRDD----------AGKL---CGDVDFAGV--------KEVAGY 254 (285)
T ss_pred CEEEEcCC----CcCccCHH---HcCCCCEEEEccccccC----------CCCe---eCCccHHHH--------HhhceE
Confidence 99999998 45688874 47999999999976542 2443 446632111 111246
Q ss_pred EccCCCCccHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDV 353 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~n 353 (370)
+||-=||.-+-+...+.+.+++.
T Consensus 255 iTPVPGGVGp~T~a~Ll~N~~~a 277 (285)
T PRK14189 255 ITPVPGGVGPMTITMLLVNTIEA 277 (285)
T ss_pred ecCCCCCchHHHHHHHHHHHHHH
Confidence 78876666544444444444433
No 87
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=3.6e-07 Score=84.24 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=93.2
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHH---HhcCCEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF---ASKADVV 253 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el---l~~aDiV 253 (370)
+++|.||+|+||..++++++..|.+|++||+++.... ++..... ...+++++ |...-+|
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~-----------------~~~~~ga~~a~sl~el~~~L~~pr~v 63 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVE-----------------ELKDEGATGAASLDELVAKLSAPRIV 63 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHH-----------------HHHhcCCccccCHHHHHHhcCCCcEE
Confidence 4689999999999999999999999999999875421 1111111 34566665 4567899
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 313 (370)
.+++|...-|..+|+ +.-..|.+|-++|+-+...--|.....+.|.+..|. .+||=.
T Consensus 64 WlMvPag~it~~vi~-~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT 120 (300)
T COG1023 64 WLMVPAGDITDAVID-DLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT 120 (300)
T ss_pred EEEccCCCchHHHHH-HHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence 999998877777764 566779999999999999999999999999999997 788854
No 88
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.48 E-value=2.6e-07 Score=88.34 Aligned_cols=102 Identities=19% Similarity=0.345 Sum_probs=75.0
Q ss_pred ceEEEEecCchhHHHHHHhccCCC----EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCC
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD 251 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD 251 (370)
++|||||+|+||.++++.+...|+ +|+++||+..+.. .+..+.+ ...+..+++.+||
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~-----------------~l~~~~g~~~~~~~~e~~~~aD 65 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLK-----------------NASDKYGITITTNNNEVANSAD 65 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHH-----------------HHHHhcCcEEeCCcHHHHhhCC
Confidence 479999999999999999987674 6999998754411 1111112 2346778889999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
+|++|+|. .....++. +.-..++++.++|.+.-| ++.+.|.+.|.
T Consensus 66 iIiLavkP-~~~~~vl~-~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 66 ILILSIKP-DLYSSVIN-QIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred EEEEEeCh-HHHHHHHH-HHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 99999994 66666663 444557889999999888 67777777764
No 89
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.47 E-value=4.8e-07 Score=86.63 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=73.6
Q ss_pred cCceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK 249 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~ 249 (370)
.+++|||||+|+||.++++.+...| .+|+++||+..+... .+...++ ...+..+++.+
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~----------------~l~~~~g~~~~~~~~e~~~~ 65 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQ----------------ELHQKYGVKGTHNKKELLTD 65 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHH----------------HHHHhcCceEeCCHHHHHhc
Confidence 3568999999999999999998877 689999986532100 1111111 23467788899
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 301 (370)
||+|++++|.. ....++ .+....++++.++|++.-| +..+.+.+.+..
T Consensus 66 aDvVilav~p~-~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 66 ANILFLAMKPK-DVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred CCEEEEEeCHH-HHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 99999999943 444444 3444557889999998655 456666666543
No 90
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.46 E-value=3e-07 Score=87.87 Aligned_cols=108 Identities=21% Similarity=0.220 Sum_probs=77.7
Q ss_pred cCceEEEEecCchhHHHHHHhcc--CCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRP--FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK 249 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~--~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~ 249 (370)
...+|||||+|.||+.+++.+.. .++++. ++|+++.+.. +....++ .+.++++++.+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~-----------------~~a~~~g~~~~~~~~eell~~ 67 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHA-----------------DFIWGLRRPPPVVPLDQLATH 67 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHH-----------------HHHHhcCCCcccCCHHHHhcC
Confidence 45789999999999999999875 588876 6787654311 1111211 34689999999
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
+|+|++|+|...- ..+ ..+.++.|.-++..++|.+.+.++|.++.+++...
T Consensus 68 ~D~Vvi~tp~~~h-~e~----~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 68 ADIVVEAAPASVL-RAI----VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred CCEEEECCCcHHH-HHH----HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 9999999995421 111 23335667777888999888899999999987654
No 91
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.46 E-value=1.5e-06 Score=83.21 Aligned_cols=120 Identities=16% Similarity=0.155 Sum_probs=74.0
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-c---chhhhccccccc-----cccccCCCCCHHHHHh
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-S---SALAVKNGIIDD-----LVDEKGCHEDIFEFAS 248 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~---~~~~~~~~~~~~-----~~~~~~~~~~l~ell~ 248 (370)
++|+|||+|.||..+|..+...|++|+++|+++......... . ..+. ..+.... .........+.+ .++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~-~~g~~~~~~~~~~~~~l~~~~~~~-~~~ 81 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLV-KKGKMTEADKEAALARITGTTDLD-DLK 81 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence 479999999999999999999999999999876542100000 0 0000 0000000 000000123454 478
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 301 (370)
+||+|+.++|...+.+.-+-++..+.++++++++....| +....|.+.+..
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 999999999977766543444566678999988443333 566688887743
No 92
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.46 E-value=4.7e-07 Score=88.59 Aligned_cols=117 Identities=22% Similarity=0.176 Sum_probs=75.8
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
..+|+|||+|.||..+|.+|...|++|.+|+|+......-........+..+ ...........++++.++.+|+|+++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g--~~~~~~~~~~~~~~e~~~~aD~Vi~~ 81 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPG--VALPAELYPTADPEEALAGADFAVVA 81 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCC--CcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence 3579999999999999999999999999999975431100000000000000 00000011235788888999999999
Q ss_pred ccCChhhhcccCHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHh
Q 017490 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARG-GLLD--YEAIAHYLEC 301 (370)
Q Consensus 257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg-~~vd--~~aL~~aL~~ 301 (370)
+|.. .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 82 v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 82 VPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred CchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 9965 33 4566789999999999997 4332 4566666655
No 93
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.45 E-value=6.4e-07 Score=86.32 Aligned_cols=131 Identities=21% Similarity=0.286 Sum_probs=86.9
Q ss_pred cccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEc-CCCccccccccccchhhhccccccccccccCCCCCHHHHHhc
Q 017490 172 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK-RSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK 249 (370)
Q Consensus 172 ~~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~d-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~ 249 (370)
+.++.||+|+||| .|.+|+++|.+|...|+.|.+++ ++ .++++++++
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT-------------------------------~~l~e~~~~ 201 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRT-------------------------------RDLPAVCRR 201 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCC-------------------------------CCHHHHHhc
Confidence 3579999999999 99999999999999999999995 32 146788899
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCce
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNV 329 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv 329 (370)
||+|+++++... ++.+.. +|+|+++||+|--.+-+.+. .+|.- ...-||-..+ ...---
T Consensus 202 ADIVIsavg~~~----~v~~~~---lk~GavVIDvGin~~~~~~~-----~~g~~-~l~GDvd~~~--------v~~~a~ 260 (296)
T PRK14188 202 ADILVAAVGRPE----MVKGDW---IKPGATVIDVGINRIPAPEK-----GEGKT-RLVGDVAFAE--------AAEVAG 260 (296)
T ss_pred CCEEEEecCChh----hcchhe---ecCCCEEEEcCCcccCCccc-----cCCCc-eeeCCCCHHH--------HHhhcc
Confidence 999999999654 455433 89999999998655322000 11311 1344653211 111124
Q ss_pred EEccCCCCccHHHHHHHHHHHHHHH
Q 017490 330 LITPHVGGVTEHSYRSMAKVVGDVA 354 (370)
Q Consensus 330 ilTPHia~~t~~~~~~~~~~~~~ni 354 (370)
.+||-=||.-+-+..-+.+.+++..
T Consensus 261 ~iTPVPGGVGp~T~a~L~~N~~~a~ 285 (296)
T PRK14188 261 AITPVPGGVGPMTIACLLANTLTAA 285 (296)
T ss_pred EecCCCCChhHHHHHHHHHHHHHHH
Confidence 6799877765544444444444433
No 94
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.43 E-value=1.6e-06 Score=89.73 Aligned_cols=131 Identities=14% Similarity=0.079 Sum_probs=79.5
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc----cchhhhccccccccccc--cCCCCCHHHHHhcCC
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ----SSALAVKNGIIDDLVDE--KGCHEDIFEFASKAD 251 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~l~ell~~aD 251 (370)
++|||||+|.||..+|..+...|++|.+||+++......... ...+....+. ..... .....++++.+++||
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDA--PLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccc--hhhhhhceEeeCCHHHHhcCCC
Confidence 479999999999999999999999999999976542110000 0000000000 00000 112357888999999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 314 (370)
+|+.++|...+.+..+-++.-+.++++++ |.++..++ ....+.+.+.... ...++-+-+
T Consensus 83 ~Vieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi-~~s~l~~~~~~~~--r~~~~hP~n 141 (495)
T PRK07531 83 WIQESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGF-LPSDLQEGMTHPE--RLFVAHPYN 141 (495)
T ss_pred EEEEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCC-CHHHHHhhcCCcc--eEEEEecCC
Confidence 99999998876665433344455777765 55555443 4567777664432 234554433
No 95
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.42 E-value=1.2e-06 Score=94.68 Aligned_cols=139 Identities=20% Similarity=0.226 Sum_probs=89.6
Q ss_pred ceEEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
++|||||+|.||.++++.++..| .+|++||++..+..... ..... .....++++.++++|+|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~-------------~~g~~-~~~~~~~~~~~~~aDvVil 69 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAV-------------SLGVI-DRGEEDLAEAVSGADVIVL 69 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHH-------------HCCCC-CcccCCHHHHhcCCCEEEE
Confidence 68999999999999999999888 48999998764411000 00000 0023467788999999999
Q ss_pred eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC---------CCCCcccCC
Q 017490 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF---------DPNDPILKF 326 (370)
Q Consensus 256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl---------~~~~pL~~~ 326 (370)
|+|.. .+..++. +..+.++++.++++++.....-.+.+.+.+....+ .+..+-|. ..+..|+.-
T Consensus 70 avp~~-~~~~vl~-~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~ 142 (735)
T PRK14806 70 AVPVL-AMEKVLA-DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRN 142 (735)
T ss_pred CCCHH-HHHHHHH-HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCC
Confidence 99954 4444442 34456788999999987553334555555543222 22233332 123357777
Q ss_pred CceEEccCCCC
Q 017490 327 KNVLITPHVGG 337 (370)
Q Consensus 327 ~nvilTPHia~ 337 (370)
.+++++|+-..
T Consensus 143 ~~~~~~~~~~~ 153 (735)
T PRK14806 143 HKVILTPLAET 153 (735)
T ss_pred CeEEEECCCCC
Confidence 88999997543
No 96
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.41 E-value=1.9e-06 Score=83.02 Aligned_cols=133 Identities=17% Similarity=0.146 Sum_probs=79.5
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccc----hhh--hcccccc-----ccccccCCCCCHHHH
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSS----ALA--VKNGIID-----DLVDEKGCHEDIFEF 246 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~----~~~--~~~~~~~-----~~~~~~~~~~~l~el 246 (370)
++|+|||+|.||..+|..+...|++|++||+++........... .+. ...+... +.........++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 58999999999999999999999999999987654211000000 000 0000000 000000112344 56
Q ss_pred HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490 247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314 (370)
Q Consensus 247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 314 (370)
+++||+|+.++|...+.+.-+-++.-+.++++++|+....| +....+.+.+.. +-+..++..|.+
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P 147 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNP 147 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCC
Confidence 78999999999977654443333444567899998877666 466777777753 223345555443
No 97
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.41 E-value=5e-06 Score=85.65 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=107.9
Q ss_pred CcceEEEEeCCCCCHHHHhcC-CCCeEEEEeCcccCccchhhHhcCCeEEeccC---CCCC-CC---chhHHHHHHHHHH
Q 017490 78 ANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIP---GDVT-GN---AASCAELTIYLML 149 (370)
Q Consensus 78 ~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p---g~~~-~n---a~~vAE~~l~~~L 149 (370)
.++|+++....| +.+-++.+ ++--+|....-..+.=-++.+.++||.+.-.- .... +. =.++|+.+=+...
T Consensus 63 ~~adiIlkV~~P-~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Av 141 (511)
T TIGR00561 63 WQSDIILKVNAP-SDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAI 141 (511)
T ss_pred hcCCEEEEeCCC-CHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHH
Confidence 357887754444 44556665 45555665555445445667888888876421 1000 00 0123333322111
Q ss_pred H-HHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchh-hhcc
Q 017490 150 G-LLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL-AVKN 227 (370)
Q Consensus 150 ~-~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~-~~~~ 227 (370)
- .++.+.. .+ .|.-. ..+ ...+.++.|+|+|.+|...++.++.+|++|.++|++.............+ .+..
T Consensus 142 i~Aa~~lgr---~~-~g~~t-aag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 142 IEAAHEFGR---FF-TGQIT-AAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred HHHHHHhhh---hc-CCcee-cCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccc
Confidence 1 1111111 01 11111 112 45578999999999999999999999999999998765421110000000 0000
Q ss_pred ccccccccccC--CC----------CCHHHHHhcCCEEEEec--cCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 228 GIIDDLVDEKG--CH----------EDIFEFASKADVVVCCL--SLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 228 ~~~~~~~~~~~--~~----------~~l~ell~~aDiV~l~l--P~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
..+.....+ .. .-+.+.++++|+|+.++ |..+ ...++.++.++.||+|+++||+|-
T Consensus 216 --~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 216 --KEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred --cccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 000000000 00 01445567899998886 3221 235889999999999999999975
No 98
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.41 E-value=1.3e-07 Score=80.96 Aligned_cols=105 Identities=23% Similarity=0.287 Sum_probs=71.2
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 251 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 251 (370)
..++|+++.|||.|.+|+.+++.|...|++ |.+++|+..+...-.. .+ . ...-....++++.+.+.++|
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~---~~---~----~~~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAE---EF---G----GVNIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHH---HH---T----GCSEEEEEGGGHCHHHHTES
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHH---Hc---C----ccccceeeHHHHHHHHhhCC
Confidence 368999999999999999999999999996 9999998654211000 00 0 00000113456778899999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCc-EEEEcCCCccc
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGS-LLVNIARGGLL 290 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~ga-ilIN~sRg~~v 290 (370)
+|+.+.|.... ++.++.++..++.. ++++.|...-|
T Consensus 78 ivI~aT~~~~~---~i~~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 78 IVINATPSGMP---IITEEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp EEEE-SSTTST---SSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred eEEEecCCCCc---ccCHHHHHHHHhhhhceeccccCCCC
Confidence 99999875433 78888887766543 88888765433
No 99
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.39 E-value=1.3e-06 Score=84.20 Aligned_cols=133 Identities=12% Similarity=0.104 Sum_probs=81.0
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hcccccc-----ccccccCCCCCHHHHHhc
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIID-----DLVDEKGCHEDIFEFASK 249 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~-----~~~~~~~~~~~l~ell~~ 249 (370)
++|||||.|.||..+|..+...|++|+.||+++......... ...+. ...+... ..........++ +.++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 389999999999999999999999999999987652110000 00000 0000000 000000023456 55899
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~m-k~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 314 (370)
||+|+-++|.+.+.+.-+-+..-+.+ +++++|+..+.+-. ..++..+++. +-+..++..|.+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~--~~~la~~~~~-~~r~~g~hf~~P 147 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP--IMKLAAATKR-PGRVLGLHFFNP 147 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC--HHHHHhhcCC-CccEEEEecCCC
Confidence 99999999999888776554444444 88999988766644 4444454432 222346666653
No 100
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.36 E-value=2.9e-06 Score=82.37 Aligned_cols=120 Identities=16% Similarity=0.170 Sum_probs=69.7
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhhhc-ccccc-ccccccCCCCCHHHHHhcCCEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAVK-NGIID-DLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
++|||||+|.||..+|..+...|++|++||++.......... ...+... .+... ..........++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 579999999999999999999999999999875431110000 0000000 00000 00000012246778889999999
Q ss_pred EeccCChh-hhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 255 CCLSLNKQ-TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 255 l~lP~t~~-t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
+++|...+ ...++ ++.-..++++++++....| +....+.+.+.
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~ 128 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT 128 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 99997654 33343 2333345677766433333 34567777764
No 101
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.36 E-value=1.7e-06 Score=82.79 Aligned_cols=127 Identities=25% Similarity=0.346 Sum_probs=87.3
Q ss_pred cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||+++|||. |.+|+++|.+|...|+.|.++... ..++.+..++|
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~------------------------------t~~l~~~~~~A 202 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR------------------------------TRNLAEVARKA 202 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC------------------------------CCCHHHHHhhC
Confidence 46799999999999 999999999999999999998321 12678889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+++++.. +++.... +|+|+++||+|--... +|++ .-||-..+- .. ---.
T Consensus 203 DIVI~avg~~----~~v~~~~---ik~GavVIDvgin~~~----------~gkl---~GDVdf~~v-------~~-~a~~ 254 (284)
T PRK14179 203 DILVVAIGRG----HFVTKEF---VKEGAVVIDVGMNRDE----------NGKL---IGDVDFDEV-------AE-VASY 254 (284)
T ss_pred CEEEEecCcc----ccCCHHH---ccCCcEEEEecceecC----------CCCe---ecCccHHHH-------Hh-hccE
Confidence 9999999854 3466544 8999999999855432 2444 345532211 11 1135
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQ 356 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~ 356 (370)
+||-=||.-+-+..-+.+.+++..++
T Consensus 255 iTPVPGGVGp~T~a~L~~N~~~a~~~ 280 (284)
T PRK14179 255 ITPVPGGVGPMTITMLMEQTYQAALR 280 (284)
T ss_pred ecCCCCCchHHHHHHHHHHHHHHHHH
Confidence 78876666554444444444444333
No 102
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.34 E-value=3.6e-06 Score=81.77 Aligned_cols=156 Identities=14% Similarity=0.090 Sum_probs=84.7
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccc-ccchhhh--cccccc-----ccccccCCCCCHHHHHhc
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC-QSSALAV--KNGIID-----DLVDEKGCHEDIFEFASK 249 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-~~~~~~~--~~~~~~-----~~~~~~~~~~~l~ell~~ 249 (370)
++|+|||+|.||..+|..+...|++|++||+++........ ....+.. ..+... ..........++.+.+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 47999999999999999999999999999998643111000 0000000 000000 000000123578888999
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCce
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNV 329 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nv 329 (370)
||+|+.++|...+....+-.+ ++.+.++..+|.++.. ......+.+.+.... . ...|-+-+ | -+-.|=+
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts-~~~~~~la~~~~~~~-~-~~~~hp~~-p------~~~~~lv 151 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTS-ALLASAFTEHLAGRE-R-CLVAHPIN-P------PYLIPVV 151 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCC-CCCHHHHHHhcCCcc-c-EEEEecCC-C------cccCceE
Confidence 999999999765444332222 3444444444443333 345667777775432 2 34444332 2 1112336
Q ss_pred EEccCCCCccHHHHHH
Q 017490 330 LITPHVGGVTEHSYRS 345 (370)
Q Consensus 330 ilTPHia~~t~~~~~~ 345 (370)
.++|+-++ +++..++
T Consensus 152 eiv~~~~t-~~~~~~~ 166 (308)
T PRK06129 152 EVVPAPWT-APATLAR 166 (308)
T ss_pred EEeCCCCC-CHHHHHH
Confidence 68887443 3444443
No 103
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.32 E-value=7.5e-07 Score=86.52 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=69.3
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 257 (370)
++|+|||+|.||..+|..|...|++|.+|+|++..............+..+. ..........+.++.++.||+|++|+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~vi~~v 79 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGI--KLPDNLRATTDLAEALADADLILVAV 79 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCC--cCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence 3799999999999999999999999999998754311000000000000000 00000002357778889999999999
Q ss_pred cCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490 258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 289 (370)
Q Consensus 258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~ 289 (370)
|. ..++.++. +..+.+++++++|+++.|-.
T Consensus 80 ~~-~~~~~v~~-~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 80 PS-QALREVLK-QLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred CH-HHHHHHHH-HHHhhcCCCCEEEEEeeccc
Confidence 96 46666653 45566789999999986543
No 104
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.31 E-value=1.4e-06 Score=89.09 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=87.1
Q ss_pred hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc------cCCCCCHHHHHhc---CCEEEEecc
Q 017490 188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE------KGCHEDIFEFASK---ADVVVCCLS 258 (370)
Q Consensus 188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~ell~~---aDiV~l~lP 258 (370)
||+.+|++|...|++|.+|||++.+.. ++... .....+++++.+. +|+|++++|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~-----------------~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~ 63 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTD-----------------EFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVK 63 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHH-----------------HHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECC
Confidence 799999999999999999999876521 11111 1134688888774 899999999
Q ss_pred CChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490 259 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314 (370)
Q Consensus 259 ~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 314 (370)
..+.++.+++ +.++.|.+|.++||++....-|...+.+.+++..+.....=|...
T Consensus 64 ~g~~v~~Vi~-~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG 118 (459)
T PRK09287 64 AGAPVDAVIE-QLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGG 118 (459)
T ss_pred CchHHHHHHH-HHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCC
Confidence 9999999884 688999999999999999999999999999998887443333433
No 105
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.29 E-value=2.5e-06 Score=81.85 Aligned_cols=80 Identities=21% Similarity=0.412 Sum_probs=67.6
Q ss_pred cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|||.|. +|+.+|..|...|++|+.++++. .++.+.+++|
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A 202 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA 202 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC
Confidence 3579999999999998 99999999999999999987531 2577889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|+.+++. .+++.++. +|+|+++||+|-..
T Consensus 203 DIVIsAvg~----p~~i~~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 203 DVIVSAVGK----PGLVTKDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred CEEEECCCC----CcccCHHH---cCCCcEEEEcCCCc
Confidence 999999984 34687764 68999999998754
No 106
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.27 E-value=9.1e-06 Score=78.57 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=71.1
Q ss_pred hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490 188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAG 265 (370)
Q Consensus 188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~ 265 (370)
-|+.+|++|...|++|++||++........ .+.+...+ ...+..+++++||+|++|+|..+.++.
T Consensus 31 gGspMArnLlkAGheV~V~Drnrsa~e~e~-------------~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~e 97 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDL-------------WKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFS 97 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCChhhhhhhh-------------hHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHH
Confidence 388999999999999999998754210000 00111122 345788999999999999998888888
Q ss_pred ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490 266 IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301 (370)
Q Consensus 266 li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 301 (370)
++ ...++.+++|+++||+|..+ .+.++..|+.
T Consensus 98 Vl-~GLaa~L~~GaIVID~STIs---P~t~~~~~e~ 129 (341)
T TIGR01724 98 IA-RTIIEHVPENAVICNTCTVS---PVVLYYSLEK 129 (341)
T ss_pred HH-HHHHhcCCCCCEEEECCCCC---HHHHHHHHHH
Confidence 87 46889999999999997754 5555555555
No 107
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.26 E-value=1.6e-06 Score=82.44 Aligned_cols=95 Identities=21% Similarity=0.310 Sum_probs=75.8
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
-+.||.+.|.|||.+|+..|+.|++||++|++....+-... +..-+......++|+.++.||+
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~AL-----------------QAaMeG~~V~tm~ea~~e~dif 273 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICAL-----------------QAAMEGYEVTTLEEAIREVDIF 273 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHH-----------------HHHhhccEeeeHHHhhhcCCEE
Confidence 36899999999999999999999999999999876654311 0111111446899999999999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 289 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~ 289 (370)
+.+. ..+.+|..+.|.+||.++++-|++.-.+
T Consensus 274 VTtT----Gc~dii~~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 274 VTTT----GCKDIITGEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred EEcc----CCcchhhHHHHHhCcCCcEEeccccccc
Confidence 8764 3567899999999999999999987654
No 108
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.25 E-value=4.8e-06 Score=86.38 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=84.5
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hccccc-----cccccccCCCCCHHHHHhc
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGII-----DDLVDEKGCHEDIFEFASK 249 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~-----~~~~~~~~~~~~l~ell~~ 249 (370)
++|||||+|.||..+|..+...|++|+.||+++......... ...+. ...+.. ...........++++ +..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 579999999999999999999999999999987642110000 00000 000000 000000112246655 569
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL-VNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP 316 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gail-IN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 316 (370)
||+|+-++|...+.+..+-.+.-+.++++++| +|+|.-.+ .++.+++.. .=+..++..|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence 99999999999888876655555557899999 59988776 356665543 22235777777444
No 109
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.24 E-value=1.1e-06 Score=81.00 Aligned_cols=131 Identities=12% Similarity=0.127 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHH--hccCCCEEEE-EcCCCcccccc
Q 017490 140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR--LRPFGVKIIA-TKRSWASHSQV 216 (370)
Q Consensus 140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~--l~~~G~~V~~-~dr~~~~~~~~ 216 (370)
.++|.+..++...|++.. | . ..++++|+|+|.+|+.+++. ....|+++.+ +|+++......
T Consensus 63 ~~gy~v~~l~~~~~~~l~---------~------~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~ 126 (213)
T PRK05472 63 GVGYNVEELLEFIEKILG---------L------D-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTK 126 (213)
T ss_pred CCCeeHHHHHHHHHHHhC---------C------C-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCE
Confidence 345778888888887752 1 1 34589999999999999986 3467898775 66654331000
Q ss_pred ccccchhhhccccccccccccCCCCCHHHHHhc--CCEEEEeccCChh---hhcccCHHHHhcCCCCcEEEEcCCCcccC
Q 017490 217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQ---TAGIVNKSFLSSMKKGSLLVNIARGGLLD 291 (370)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~lP~t~~---t~~li~~~~l~~mk~gailIN~sRg~~vd 291 (370)
..... .....++++++++ .|+|++++|.... ...+.......-+....+.+|+.+|-+|+
T Consensus 127 --------------i~g~~-v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~ 191 (213)
T PRK05472 127 --------------IGGIP-VYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVR 191 (213)
T ss_pred --------------eCCeE-EcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEE
Confidence 00000 1123567788765 9999999997654 23333344445567778999999999999
Q ss_pred HHHHHHHHHh
Q 017490 292 YEAIAHYLEC 301 (370)
Q Consensus 292 ~~aL~~aL~~ 301 (370)
.++|..+|..
T Consensus 192 ~~~l~~~l~~ 201 (213)
T PRK05472 192 NVDLTVELQT 201 (213)
T ss_pred EechHHHHHH
Confidence 9999999874
No 110
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.23 E-value=4.2e-06 Score=86.64 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=85.4
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchh--hhccccc-----cccccccCCCCCHHHHHh
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSAL--AVKNGII-----DDLVDEKGCHEDIFEFAS 248 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~--~~~~~~~-----~~~~~~~~~~~~l~ell~ 248 (370)
=++|||||+|.||..+|..+...|++|..||+++......... ...+ ....+.. ...........++++ +.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~ 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence 3579999999999999999999999999999986542110000 0000 0000000 000000112346654 57
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF 317 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl 317 (370)
+||+|+.++|...+.+..+-.+.-+.++++++|. |+|.-.+ ..+.+.+.. ..+..++..|.+-|.
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 9999999999988877765555556678888776 7766554 456666643 344567887775553
No 111
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.21 E-value=8.1e-06 Score=83.86 Aligned_cols=151 Identities=16% Similarity=0.181 Sum_probs=94.3
Q ss_pred ceEEEEecCchhHHHHHHhccC--CCEEEEEcCCCccccccccccchhhhcccccccccccc----C-CCCCHHHHHhcC
Q 017490 178 KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK----G-CHEDIFEFASKA 250 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~l~ell~~a 250 (370)
++|+|||+|.+|..+|..++.. |++|++||.+..+...-... ..+..+....++..+. . ...+.++.+++|
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g--~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSD--QLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcC--CCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 5799999999999999999865 68999999876542110000 0001111112221110 1 224567789999
Q ss_pred CEEEEeccCChh-----------hhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEe-cCCCCC
Q 017490 251 DVVVCCLSLNKQ-----------TAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTEP 316 (370)
Q Consensus 251 DiV~l~lP~t~~-----------t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~EP 316 (370)
|++++|+|.... ...+.. +..-+.+++|.++|.-|.-.+-..+.+...|.+.. .|.-+. +|.+|-
T Consensus 80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PEr 158 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEF 158 (473)
T ss_pred CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCc
Confidence 999999973321 112221 23455689999999999999988889998888731 111111 267888
Q ss_pred CCCCCccc---CCCceEE
Q 017490 317 FDPNDPIL---KFKNVLI 331 (370)
Q Consensus 317 l~~~~pL~---~~~nvil 331 (370)
+.+.+.+. ..|+|++
T Consensus 159 l~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 159 LAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred cCCCCcccccCCCCEEEE
Confidence 87776544 4555553
No 112
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.21 E-value=9.1e-07 Score=74.99 Aligned_cols=91 Identities=23% Similarity=0.311 Sum_probs=53.8
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEE-cCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 252 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 252 (370)
...+|||||.|++|..+++.|...|+.|.++ +|+..... ....... ...++++++.++|+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~-----------------~a~~~~~~~~~~~~~~~~~~aDl 71 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAE-----------------RAAAFIGAGAILDLEEILRDADL 71 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHH-----------------HHHC--TT-----TTGGGCC-SE
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccc-----------------ccccccccccccccccccccCCE
Confidence 4568999999999999999999999999875 45432210 1111111 34577889999999
Q ss_pred EEEeccCChhhhcccCHHHHhc--CCCCcEEEEcC
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSS--MKKGSLLVNIA 285 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~--mk~gailIN~s 285 (370)
+++++|.. ....+. ++.-.. .++|.+++-||
T Consensus 72 v~iavpDd-aI~~va-~~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 72 VFIAVPDD-AIAEVA-EQLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp EEE-S-CC-HHHHHH-HHHHCC--S-TT-EEEES-
T ss_pred EEEEechH-HHHHHH-HHHHHhccCCCCcEEEECC
Confidence 99999975 333332 222222 58999999995
No 113
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.18 E-value=2.9e-06 Score=80.22 Aligned_cols=101 Identities=16% Similarity=0.250 Sum_probs=71.3
Q ss_pred eEEEEecCchhHHHHHHhccCCCE---EEEEcCCCccccccccccchhhhcccccccccccc-C--CCCCHHHHHhcCCE
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVK---IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKADV 252 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~---V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~aDi 252 (370)
+|||||+|+||+.+++.+...|.. +.+++|+..+.. .+.... + ...+.+++++++|+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~-----------------~l~~~~~~~~~~~~~~~~~~~aDv 64 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAA-----------------RLAERFPKVRIAKDNQAVVDRSDV 64 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHH-----------------HHHHHcCCceEeCCHHHHHHhCCE
Confidence 699999999999999999877753 578888654310 111111 1 23578888899999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG 302 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g 302 (370)
|++++| ......++.. + .+++|.++|.++ .-+..+.|.+.+..+
T Consensus 65 Vilav~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 65 VFLAVR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred EEEEeC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 999999 4445555432 3 257899999987 347888888887653
No 114
>PRK07680 late competence protein ComER; Validated
Probab=98.17 E-value=2.7e-06 Score=81.10 Aligned_cols=101 Identities=19% Similarity=0.328 Sum_probs=71.6
Q ss_pred eEEEEecCchhHHHHHHhccCCC----EEEEEcCCCccccccccccchhhhcccccccccccc-C--CCCCHHHHHhcCC
Q 017490 179 TVFILGFGNIGVELAKRLRPFGV----KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKAD 251 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~----~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~aD 251 (370)
+|||||+|.||+.+++.|...|. +|.+++|+..+.. .+.... + ...+.++++..+|
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~-----------------~~~~~~~g~~~~~~~~~~~~~aD 64 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAY-----------------HIKERYPGIHVAKTIEEVISQSD 64 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHH-----------------HHHHHcCCeEEECCHHHHHHhCC
Confidence 69999999999999999987773 7999999754311 011111 1 2356778889999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
+|++++| ......++ ++....++++.++|.++-| +..+.|.+.+.
T Consensus 65 iVilav~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 65 LIFICVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred EEEEecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 9999998 33455555 3344567888999999854 46777766654
No 115
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.13 E-value=2.4e-06 Score=86.54 Aligned_cols=98 Identities=30% Similarity=0.446 Sum_probs=70.3
Q ss_pred cccCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS 248 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~ 248 (370)
.+.|++|+|+|+|.||+.+++.|+..| .+|++++|+..+.. ++....+ ...++.+.+.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~-----------------~la~~~g~~~i~~~~l~~~l~ 239 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAE-----------------DLAKELGGEAVKFEDLEEYLA 239 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHH-----------------HHHHHcCCeEeeHHHHHHHHh
Confidence 478999999999999999999999999 68999999865421 1111111 2246778889
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCC----CCcEEEEcCCCcccC
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMK----KGSLLVNIARGGLLD 291 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk----~gailIN~sRg~~vd 291 (370)
.+|+|+.|++ .+..+++++.++.+. ...++||.+...=+|
T Consensus 240 ~aDvVi~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 240 EADIVISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred hCCEEEECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 9999999965 455678888777642 235788887544333
No 116
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.10 E-value=1.3e-05 Score=70.60 Aligned_cols=81 Identities=23% Similarity=0.434 Sum_probs=58.2
Q ss_pred cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|||-+. +|++++..|...|+.|...+.+. .++++.+++|
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------------------------~~l~~~~~~A 80 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------------------------KNLQEITRRA 80 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------------------------SSHHHHHTTS
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------------------------Ccccceeeec
Confidence 4579999999999985 99999999999999999876431 3688899999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 289 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~ 289 (370)
|+|+.+++- .++|..+. +|+|+++||++.-..
T Consensus 81 DIVVsa~G~----~~~i~~~~---ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 81 DIVVSAVGK----PNLIKADW---IKPGAVVIDVGINYV 112 (160)
T ss_dssp SEEEE-SSS----TT-B-GGG---S-TTEEEEE--CEEE
T ss_pred cEEeeeecc----cccccccc---ccCCcEEEecCCccc
Confidence 999999873 35677654 699999999987654
No 117
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.09 E-value=2.1e-05 Score=81.27 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=105.9
Q ss_pred cceEEEEeCCCCCHHHHhcCC-CCeEEEEeCcccCccchhhHhcCCeEEec---cCCCCCCC----chhHHHHHHHHHHH
Q 017490 79 NYHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVAR---IPGDVTGN----AASCAELTIYLMLG 150 (370)
Q Consensus 79 ~~d~~i~~~~~~~~~~l~~~~-~Lk~I~~~~~G~d~id~~~~~~~gI~V~n---~pg~~~~n----a~~vAE~~l~~~L~ 150 (370)
++|+++.-..+ +.+-++.++ +--+|.......+.=-++.+.++||.+.- .|..+.+. =.++|+.+=
T Consensus 65 ~~diilkV~~P-~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG----- 138 (509)
T PRK09424 65 QSDIILKVNAP-SDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG----- 138 (509)
T ss_pred cCCEEEEeCCC-CHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH-----
Confidence 58988754444 445566664 45566665555555456678888887764 22100000 012333222
Q ss_pred HHHhHHHHHHHHHhcccCCC---CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcc
Q 017490 151 LLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN 227 (370)
Q Consensus 151 ~~R~~~~~~~~~~~~~~~~~---~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~ 227 (370)
.|-+....+.+ +++... ......|.+|.|+|.|.+|...++.++.+|++|+++|+++.+..........+...+
T Consensus 139 -y~Av~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 139 -YRAVIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred -HHHHHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEec
Confidence 11111111111 111100 011456999999999999999999999999999999998654221111000000000
Q ss_pred ccccccccc-cC-CC-CC--------HHHHHhcCCEEEEeccCChh-hhcccCHHHHhcCCCCcEEEEcCC
Q 017490 228 GIIDDLVDE-KG-CH-ED--------IFEFASKADVVVCCLSLNKQ-TAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 228 ~~~~~~~~~-~~-~~-~~--------l~ell~~aDiV~l~lP~t~~-t~~li~~~~l~~mk~gailIN~sR 286 (370)
..-.+.... +. .. .+ +.+.+..+|+|+.+...... ...++.++.++.||+|++++++|-
T Consensus 216 ~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 216 FEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 000000000 00 00 01 11223569999998764221 234556889999999999999974
No 118
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=2.7e-05 Score=74.61 Aligned_cols=128 Identities=20% Similarity=0.309 Sum_probs=87.2
Q ss_pred cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|||.|. +|+++|..|...|+.|..++++. .++.+..++|
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A 203 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------------------------KNLRHHVRNA 203 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------------------------CCHHHHHhhC
Confidence 3579999999999999 99999999999999999986431 3688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+.+++.. +++..+. +|+|+++||+|--.+- +|++. -||-..+ .... --.
T Consensus 204 DIvi~avG~p----~~v~~~~---vk~gavVIDvGin~~~----------~gk~~---GDvd~~~-------~~~~-a~~ 255 (285)
T PRK10792 204 DLLVVAVGKP----GFIPGEW---IKPGAIVIDVGINRLE----------DGKLV---GDVEFET-------AAER-ASW 255 (285)
T ss_pred CEEEEcCCCc----ccccHHH---cCCCcEEEEccccccc----------CCCcC---CCcCHHH-------HHhh-ccC
Confidence 9999998632 3566644 6999999999854421 23332 2432110 0111 235
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQL 357 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~~ 357 (370)
+||==||.-+-+...+.+.++...+++
T Consensus 256 itPvPGGVGp~T~a~L~~N~~~a~~~~ 282 (285)
T PRK10792 256 ITPVPGGVGPMTVATLLENTLQACEEY 282 (285)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHh
Confidence 788777776655555555555444443
No 119
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.05 E-value=3.7e-06 Score=73.73 Aligned_cols=104 Identities=17% Similarity=0.270 Sum_probs=64.3
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccc--ccccccCCCCCHHHHHhcCCEEEEe
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID--DLVDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
+|+|+|.|+.|.++|..+...|.+|..|.|+.+.... .. ..+....... .+........++++.++.+|+|+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~-i~---~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEE-IN---ETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIA 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHH-HH---HHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHH-HH---HhCCCCCCCCCcccCcccccccCHHHHhCcccEEEec
Confidence 6899999999999999999999999999987532100 00 0000000000 0001111236899999999999999
Q ss_pred ccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+|.. ..+.++ ++....++++..+|++..|=
T Consensus 77 vPs~-~~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 77 VPSQ-AHREVL-EQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp S-GG-GHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred ccHH-HHHHHH-HHHhhccCCCCEEEEecCCc
Confidence 9944 344443 34556678999999998763
No 120
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.05 E-value=4.4e-05 Score=65.82 Aligned_cols=80 Identities=25% Similarity=0.303 Sum_probs=66.9
Q ss_pred cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|+|- ..+|+++|..|...|++|...+++. .++++..++|
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------------------------~~l~~~v~~A 72 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------------------------IQLQSKVHDA 72 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------------------------cCHHHHHhhC
Confidence 56899999999997 5789999999999999999987531 2577889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|+.+++.. ++|+.+. +|||+++||++...
T Consensus 73 DIVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 73 DVVVVGSPKP----EKVPTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CEEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence 9999998754 5688766 68999999998655
No 121
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.04 E-value=1.1e-05 Score=73.59 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=63.6
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 257 (370)
++++|+|.|+||..+|+++...|++|++-+++..+...... +.........+.++..+.+|+|++.+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a-------------~~l~~~i~~~~~~dA~~~aDVVvLAV 68 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAA-------------AALGPLITGGSNEDAAALADVVVLAV 68 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHH-------------HhhccccccCChHHHHhcCCEEEEec
Confidence 57999999999999999999999999988665433111100 00000113357788999999999999
Q ss_pred cCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490 258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287 (370)
Q Consensus 258 P~t~~t~~li~~~~l~~mk~gailIN~sRg 287 (370)
|... ...+ .++....+. |.++|++.-.
T Consensus 69 P~~a-~~~v-~~~l~~~~~-~KIvID~tnp 95 (211)
T COG2085 69 PFEA-IPDV-LAELRDALG-GKIVIDATNP 95 (211)
T ss_pred cHHH-HHhH-HHHHHHHhC-CeEEEecCCC
Confidence 9642 2222 234444444 8999998764
No 122
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.04 E-value=5.9e-06 Score=79.04 Aligned_cols=103 Identities=23% Similarity=0.328 Sum_probs=74.6
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
.....+|.|+|.|-+|..-||.+.++|.+|...|.+.++..... +-+ .+ ..-..+.....+++.+.++|+|
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ld-----d~f-~~---rv~~~~st~~~iee~v~~aDlv 235 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLD-----DLF-GG---RVHTLYSTPSNIEEAVKKADLV 235 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhh-----Hhh-Cc---eeEEEEcCHHHHHHHhhhccEE
Confidence 35667899999999999999999999999999998865521100 000 00 0000111446788999999999
Q ss_pred EEeccC-ChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 254 VCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 254 ~l~lP~-t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
+..+=- -...-.++.++++++||||+++||++
T Consensus 236 IgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 236 IGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred EEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 987532 23455688899999999999999996
No 123
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.04 E-value=1.6e-05 Score=76.23 Aligned_cols=127 Identities=26% Similarity=0.325 Sum_probs=87.4
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||+|.|||-| .+|+++|..|...|+.|.++.... .++.+.+++|
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------------------------~~l~~~~~~A 201 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------------------------KDLSFYTQNA 201 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------------------------HHHHHHHHhC
Confidence 457999999999999 999999999999999999875321 2577889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+.+++ ..+++..+++ |+|+++||+|-..+- +|++ .-||-..+ ..+ ---.
T Consensus 202 DIvV~AvG----~p~~i~~~~v---k~GavVIDvGi~~~~----------~gkl---vGDvd~e~-------v~~-~a~~ 253 (285)
T PRK14191 202 DIVCVGVG----KPDLIKASMV---KKGAVVVDIGINRLN----------DGRL---VGDVDFEN-------VAP-KASF 253 (285)
T ss_pred CEEEEecC----CCCcCCHHHc---CCCcEEEEeeccccc----------CCce---eccccHHH-------Hhh-hccE
Confidence 99999986 3357887765 999999999865531 2444 33553211 111 1134
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQ 356 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~ 356 (370)
+||--||.-+-+..-+.+.+++..++
T Consensus 254 iTPVPGGVGpvT~a~L~~N~~~a~~~ 279 (285)
T PRK14191 254 ITPVPGGVGPMTIVSLLENTLIAAEK 279 (285)
T ss_pred EecCCCCChHHHHHHHHHHHHHHHHH
Confidence 89976776554444444444444433
No 124
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=1.5e-05 Score=76.05 Aligned_cols=80 Identities=16% Similarity=0.303 Sum_probs=67.9
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++|++|.|+|.+ .+|+++|..+..+|+.|..+.++. .++.+.+++|
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------------------------~~L~~~~~~A 196 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------------------------ENLKAELRQA 196 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------------------------hHHHHHHhhC
Confidence 457999999999999 999999999999999999876431 2588889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|+.+++.. +++.++++ |||+++||+|-..
T Consensus 197 DIvI~Avgk~----~lv~~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 197 DILVSAAGKA----GFITPDMV---KPGATVIDVGINQ 227 (279)
T ss_pred CEEEECCCcc----cccCHHHc---CCCcEEEEeeccc
Confidence 9999999633 67888874 9999999998654
No 125
>PLN00203 glutamyl-tRNA reductase
Probab=98.02 E-value=6.6e-06 Score=85.31 Aligned_cols=102 Identities=22% Similarity=0.294 Sum_probs=70.0
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
.+.+++|+|||.|.||+.+++.|...|+ +|++++|+..+...-... + ...........++.+.+.++|+
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~---~-------~g~~i~~~~~~dl~~al~~aDV 332 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREE---F-------PDVEIIYKPLDEMLACAAEADV 332 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHH---h-------CCCceEeecHhhHHHHHhcCCE
Confidence 3889999999999999999999999997 799999986542110000 0 0000001123467788899999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCC-------cEEEEcCCCc
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKG-------SLLVNIARGG 288 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~g-------ailIN~sRg~ 288 (370)
|+.+.| ....++.++.++.++++ -+|||.|-..
T Consensus 333 VIsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR 372 (519)
T PLN00203 333 VFTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR 372 (519)
T ss_pred EEEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence 999854 45668888888877432 3677776543
No 126
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.02 E-value=5.4e-06 Score=73.48 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=68.1
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhhhc-cccccc-ccc-----c-cC-CCCC
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAVK-NGIIDD-LVD-----E-KG-CHED 242 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~~~-~~~~~~-~~~-----~-~~-~~~~ 242 (370)
..+...+|.|+|.|.+|+..++.++++|++|..+|............ ....... ++.... .++ + .. ....
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 35667899999999999999999999999999999865431100000 0000000 000000 000 0 00 0124
Q ss_pred HHHHHhcCCEEEEe-ccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 243 IFEFASKADVVVCC-LSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 243 l~ell~~aDiV~l~-lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
+.+.++.+|+|+.+ +......-.++.++.++.||+|++++|+|
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 77888999999864 44455667799999999999999999996
No 127
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.01 E-value=7e-06 Score=79.98 Aligned_cols=95 Identities=29% Similarity=0.453 Sum_probs=63.3
Q ss_pred ccCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhc
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK 249 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~ 249 (370)
+.|++|+|+|.|.||+.+++.++..| .+|+++||++.+.. ++..+.+ ...++.+.+.+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~-----------------~la~~~g~~~~~~~~~~~~l~~ 238 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE-----------------ELAKELGGNAVPLDELLELLNE 238 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-----------------HHHHHcCCeEEeHHHHHHHHhc
Confidence 68999999999999999999998866 57999999865411 1111111 22356777889
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcC-CCCcEEEEcCCCc
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNIARGG 288 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~m-k~gailIN~sRg~ 288 (370)
+|+|+.++|.... ..++ +..++.. +++.++||.+...
T Consensus 239 aDvVi~at~~~~~-~~~~-~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 239 ADVVISATGAPHY-AKIV-ERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred CCEEEECCCCCch-HHHH-HHHHhhCCCCCeEEEEeCCCC
Confidence 9999999985433 2222 2233322 3567787777543
No 128
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=2.2e-05 Score=75.53 Aligned_cols=80 Identities=19% Similarity=0.337 Sum_probs=66.1
Q ss_pred cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|+|.|. +|+++|..|...|++|..+++.. .++.+.++++
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------------------------~~L~~~~~~a 203 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------------------------QNLPELVKQA 203 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------------------------hhHHHHhccC
Confidence 4679999999999998 99999999999999999987621 2567778999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|+.+++. + ++++.+. +|+|++++|++-..
T Consensus 204 DIvI~AtG~-~---~~v~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 204 DIIVGAVGK-P---ELIKKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred CEEEEccCC-C---CcCCHHH---cCCCCEEEEEEEee
Confidence 999999962 2 2677655 79999999998654
No 129
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.00 E-value=4e-05 Score=72.63 Aligned_cols=100 Identities=26% Similarity=0.347 Sum_probs=66.5
Q ss_pred ceEEEEecCchhHHHHHHhccCC---CEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFG---VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 252 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G---~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 252 (370)
++|+|||+|.||..+++.+...| .+|.+++|+.+... .....++ ...+.++++.++|+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~-----------------~~~~~~g~~~~~~~~~~~~~adv 65 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRA-----------------ALAEEYGVRAATDNQEAAQEADV 65 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHH-----------------HHHHhcCCeecCChHHHHhcCCE
Confidence 47999999999999999998888 78999999754310 0111111 23567788899999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
|++|+|.. ..+.++. .....+ +.++|.+.-| +..+.+.+.+.
T Consensus 66 Vil~v~~~-~~~~v~~-~l~~~~--~~~vvs~~~g--i~~~~l~~~~~ 107 (267)
T PRK11880 66 VVLAVKPQ-VMEEVLS-ELKGQL--DKLVVSIAAG--VTLARLERLLG 107 (267)
T ss_pred EEEEcCHH-HHHHHHH-HHHhhc--CCEEEEecCC--CCHHHHHHhcC
Confidence 99999843 3444332 122223 4677777665 35666666654
No 130
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.00 E-value=1.6e-05 Score=76.12 Aligned_cols=103 Identities=18% Similarity=0.262 Sum_probs=71.7
Q ss_pred ceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhcccccccccccc-C--CCCCHHHHHhcC
Q 017490 178 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G--CHEDIFEFASKA 250 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~ell~~a 250 (370)
.+|+|||+|.||..+++.+...| .+|.+++++...... ...... . ...+.++++.++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~----------------~l~~~~~~~~~~~~~~e~~~~a 65 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFN----------------QLYDKYPTVELADNEAEIFTKC 65 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHH----------------HHHHHcCCeEEeCCHHHHHhhC
Confidence 37999999999999999998777 689999886422100 000111 1 135677888999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
|+|++|+|. .....++ .+....++++..+|.+.-| +..+.|.+.+.
T Consensus 66 DvVilavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 66 DHSFICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred CEEEEecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 999999993 3344443 2333456788899998877 67778888764
No 131
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=2.9e-05 Score=74.46 Aligned_cols=79 Identities=19% Similarity=0.386 Sum_probs=65.7
Q ss_pred cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||.|. +|+++|..|...|+.|.+++... .++.+..++|
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A 208 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------------------------DDLKKYTLDA 208 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------------------------CCHHHHHhhC
Confidence 4579999999999999 99999999999999999986421 3678889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg 287 (370)
|+|++++.-. +++..+. +|+|+++||+|--
T Consensus 209 DIvv~AvG~p----~~i~~~~---vk~gavVIDvGin 238 (287)
T PRK14176 209 DILVVATGVK----HLIKADM---VKEGAVIFDVGIT 238 (287)
T ss_pred CEEEEccCCc----cccCHHH---cCCCcEEEEeccc
Confidence 9999987632 4677664 7899999999854
No 132
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.95 E-value=1.3e-05 Score=76.44 Aligned_cols=106 Identities=20% Similarity=0.263 Sum_probs=69.8
Q ss_pred ceEEEEecCchhHHHHHHhccC--CCE-EEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490 178 KTVFILGFGNIGVELAKRLRPF--GVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 252 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~--G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 252 (370)
.+|||||+|.||+.+++.+... +++ +.++|++..+.. .+....+ .+.++++++.++|+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~-----------------~~a~~~~~~~~~~~~ell~~~Dv 64 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAE-----------------NLASKTGAKACLSIDELVEDVDL 64 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHH-----------------HHHHhcCCeeECCHHHHhcCCCE
Confidence 3799999999999999988764 566 456888754310 1111111 34689998899999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHhCCce
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECGHLG 305 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g~i~ 305 (370)
|++|.|.. ....+ ....++.|.-++..+.|.+.|. +.|.++.+++...
T Consensus 65 Vvi~a~~~-~~~~~----~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 65 VVECASVN-AVEEV----VPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred EEEcCChH-HHHHH----HHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 99998742 22111 1223455666777888887763 4677777776543
No 133
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.95 E-value=8.1e-06 Score=82.84 Aligned_cols=94 Identities=30% Similarity=0.458 Sum_probs=66.3
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS 248 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~ 248 (370)
.+.|++|+|+|.|.||+.+++.|...|+ +|++++|++.+.. .+....+ ...++.+.+.
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~-----------------~la~~~g~~~~~~~~~~~~l~ 241 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAE-----------------ELAEEFGGEAIPLDELPEALA 241 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHH-----------------HHHHHcCCcEeeHHHHHHHhc
Confidence 4789999999999999999999999998 7999999764421 1111111 2245667788
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcC-----CCCcEEEEcCCC
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSM-----KKGSLLVNIARG 287 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~m-----k~gailIN~sRg 287 (370)
++|+|+.++|. ...+++.+.++.+ +.+.++||.+-.
T Consensus 242 ~aDvVI~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~P 282 (423)
T PRK00045 242 EADIVISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAVP 282 (423)
T ss_pred cCCEEEECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence 99999999663 3446777776553 245677777643
No 134
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.95 E-value=0.00013 Score=68.01 Aligned_cols=139 Identities=21% Similarity=0.260 Sum_probs=91.0
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCE---EEEEcCCC----ccccccccccchhhhcccccccccccc---CCCC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVK---IIATKRSW----ASHSQVSCQSSALAVKNGIIDDLVDEK---GCHE 241 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~---V~~~dr~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 241 (370)
+..++++++.|+|.|.+|+.+|+.|...|++ |+.+||+. .+... ... +. ..+.... ....
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~-L~~---~~------~~la~~~~~~~~~~ 89 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDD-LNP---DK------NEIAKETNPEKTGG 89 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchh-hhH---HH------HHHHHHhccCcccC
Confidence 3568899999999999999999999999985 99999983 22100 000 00 0011111 1113
Q ss_pred CHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCC-ceEEEEecCCCCCCCCC
Q 017490 242 DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH-LGGLGIDVAWTEPFDPN 320 (370)
Q Consensus 242 ~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~-i~ga~lDV~~~EPl~~~ 320 (370)
++.+.++++|+|+.+.| .++++.+.++.|+++.++...+.. ..|.-+.++.+.|. +..-| .+.+
T Consensus 90 ~l~~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G-----~~~~--- 154 (226)
T cd05311 90 TLKEALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATG-----RSDF--- 154 (226)
T ss_pred CHHHHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeC-----CCCC---
Confidence 67788889999999876 467888999999999999998843 34444444444443 23222 1221
Q ss_pred CcccCCCceEEccCCCC
Q 017490 321 DPILKFKNVLITPHVGG 337 (370)
Q Consensus 321 ~pL~~~~nvilTPHia~ 337 (370)
.....|+++-|=++-
T Consensus 155 --~~Q~nn~~~fPg~~~ 169 (226)
T cd05311 155 --PNQVNNVLGFPGIFR 169 (226)
T ss_pred --ccccceeeecchhhH
Confidence 346788999996653
No 135
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.92 E-value=8.1e-05 Score=67.34 Aligned_cols=96 Identities=24% Similarity=0.320 Sum_probs=67.0
Q ss_pred CcccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCC----HHH
Q 017490 171 TGETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHED----IFE 245 (370)
Q Consensus 171 ~~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~e 245 (370)
.+.+++||++.|||-+ .+|+++|..|...|+.|..+|.+.-..... . ...-.+.....+ +.+
T Consensus 56 ~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~-~------------~~~~hs~t~~~~~~~~l~~ 122 (197)
T cd01079 56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTR-G------------ESIRHEKHHVTDEEAMTLD 122 (197)
T ss_pred cCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccccc-c------------cccccccccccchhhHHHH
Confidence 4678999999999986 579999999999999999997532110000 0 000000000012 778
Q ss_pred HHhcCCEEEEeccCChhhhcc-cCHHHHhcCCCCcEEEEcCC
Q 017490 246 FASKADVVVCCLSLNKQTAGI-VNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 246 ll~~aDiV~l~lP~t~~t~~l-i~~~~l~~mk~gailIN~sR 286 (370)
.+++||+|+.+++.. ++ +..+. .|+|+++||+|-
T Consensus 123 ~~~~ADIVIsAvG~~----~~~i~~d~---ik~GavVIDVGi 157 (197)
T cd01079 123 CLSQSDVVITGVPSP----NYKVPTEL---LKDGAICINFAS 157 (197)
T ss_pred HhhhCCEEEEccCCC----CCccCHHH---cCCCcEEEEcCC
Confidence 999999999999843 45 77766 589999999983
No 136
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.91 E-value=2.7e-05 Score=76.34 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=73.4
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc---cccCCCCCHHHHHhcCCEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV---DEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ell~~aDiV~ 254 (370)
++|+|||.|.||..+|..|...|++|.+++|+..... ... ..+.+....-.... .......+. +.+..+|+|+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~--~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 78 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDE--LRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL 78 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHH--HHh-cCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence 4799999999999999999999999999998532100 000 00000000000000 000012234 5678999999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
+++|.. +...++ ....+.++++.++|.+..| +...+.+.+.+...++.
T Consensus 79 l~vk~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 79 VTVKSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred EEecCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 999854 444444 3455667889999988654 44556677777655543
No 137
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.90 E-value=3.4e-05 Score=73.28 Aligned_cols=98 Identities=32% Similarity=0.400 Sum_probs=74.1
Q ss_pred ceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCC
Q 017490 178 KTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKAD 251 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aD 251 (370)
+++||||+|+||++++..+...| .+|++.+|+.++.. .+..+++ ...+.+++..++|
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~-----------------~l~~~~g~~~~~~~~~~~~~ad 64 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA-----------------ALAAEYGVVTTTDNQEAVEEAD 64 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH-----------------HHHHHcCCcccCcHHHHHhhCC
Confidence 47999999999999999998888 58999998865421 1223333 2456778999999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMK---KGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk---~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
+|++++.. + .-.+.++.++ ++.++|.++-| +..+.|.+.|.
T Consensus 65 vv~LavKP--q----~~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~ 108 (266)
T COG0345 65 VVFLAVKP--Q----DLEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG 108 (266)
T ss_pred EEEEEeCh--H----hHHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence 99999873 2 2245666666 68999999877 67788888776
No 138
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.89 E-value=1.6e-05 Score=73.47 Aligned_cols=105 Identities=24% Similarity=0.260 Sum_probs=62.9
Q ss_pred ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490 178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
++|+||| .|.||+.+|+.|...|.+|.+++|+.++...... .+ . +..............+..+.++++|+|+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~---~~-~-~~~~~~g~~~~~~~~~~~ea~~~aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAA---KA-L-EELGHGGSDIKVTGADNAEAAKRADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHH---HH-H-hhccccCCCceEEEeChHHHHhcCCEEEEE
Confidence 3699997 9999999999999999999999987543110000 00 0 000000000000113567788999999999
Q ss_pred ccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc
Q 017490 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL 290 (370)
Q Consensus 257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v 290 (370)
+|.. ....++. +.-..++ +.++|++.-|--.
T Consensus 76 vp~~-~~~~~l~-~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 76 VPWD-HVLKTLE-SLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred CCHH-HHHHHHH-HHHHhcc-CCEEEEeccCcee
Confidence 9954 3333332 2222343 5899999877443
No 139
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.88 E-value=0.0002 Score=70.64 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=114.8
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc--cccCCCCCHHHH---HhcCCE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEF---ASKADV 252 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~el---l~~aDi 252 (370)
..+|+||+|.||+.+|......|++|.+|||+..+...- +.+.. .......+++|+ |+.---
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f-------------~~~~~~~k~i~~~~sieefV~~Le~PRk 70 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEF-------------LAERAKGKNIVPAYSIEEFVASLEKPRK 70 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHH-------------HHhCccCCCccccCcHHHHHHHhcCCce
Confidence 469999999999999999999999999999987652100 00111 111134567765 456777
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEc
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT 332 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilT 332 (370)
|++++-.-......| .+.+..|.+|-++|+-+...--|+..-.++|.+..|...|.-|...|-=. +. =|- +.
T Consensus 71 I~lMVkAG~~VD~~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA----~~-GPS--iM 142 (473)
T COG0362 71 ILLMVKAGTPVDAVI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGA----RH-GPS--IM 142 (473)
T ss_pred EEEEEecCCcHHHHH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccc----cc-CCC--cC
Confidence 888876542234444 36788899999999999999999999999999999999999998877421 11 122 22
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHcCCCC
Q 017490 333 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363 (370)
Q Consensus 333 PHia~~t~~~~~~~~~~~~~ni~~~~~g~~~ 363 (370)
| |-+.++++.+...+ +.|-+-..|+|.
T Consensus 143 p---GG~~eay~~v~pil-~~IaAk~~g~pC 169 (473)
T COG0362 143 P---GGQKEAYELVAPIL-TKIAAKVDGEPC 169 (473)
T ss_pred C---CCCHHHHHHHHHHH-HHHHhhcCCCCc
Confidence 3 77888988777654 444444457664
No 140
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.87 E-value=5.6e-05 Score=74.36 Aligned_cols=98 Identities=27% Similarity=0.330 Sum_probs=70.7
Q ss_pred cccccCceEEEEec-CchhHHHHHHhcc-CC-CEEEEEcCCCccccccccccchhhhcccccccccccc--CCCCCHHHH
Q 017490 172 GETLLGKTVFILGF-GNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--GCHEDIFEF 246 (370)
Q Consensus 172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~-~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~el 246 (370)
+..++|++|.|+|. |.||+.+|+.|.. .| .+++.++|+..+.. .+..+. +...++++.
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~-----------------~La~el~~~~i~~l~~~ 212 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQ-----------------ELQAELGGGKILSLEEA 212 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHH-----------------HHHHHhccccHHhHHHH
Confidence 45789999999998 8999999999964 56 48999998744310 111111 123468889
Q ss_pred HhcCCEEEEeccCChhhhc-ccCHHHHhcCCCCcEEEEcCCCcccCH
Q 017490 247 ASKADVVVCCLSLNKQTAG-IVNKSFLSSMKKGSLLVNIARGGLLDY 292 (370)
Q Consensus 247 l~~aDiV~l~lP~t~~t~~-li~~~~l~~mk~gailIN~sRg~~vd~ 292 (370)
+.++|+|+.+.- .... +++.+. ++++.++||.|+..=||.
T Consensus 213 l~~aDiVv~~ts---~~~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 213 LPEADIVVWVAS---MPKGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred HccCCEEEECCc---CCcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 999999887643 2334 478765 489999999999877764
No 141
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.85 E-value=2.2e-05 Score=74.89 Aligned_cols=95 Identities=33% Similarity=0.426 Sum_probs=69.6
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV 252 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi 252 (370)
-|.||+|+|||||+=|.+-|..|+..|.+|++--|..+.. + ..+.+.+ ..-+.+|+.+.+|+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s---------~--------~kA~~dGf~V~~v~ea~k~ADv 77 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSS---------W--------KKAKEDGFKVYTVEEAAKRADV 77 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchh---------H--------HHHHhcCCEeecHHHHhhcCCE
Confidence 5899999999999999999999999999988765544331 0 1111222 34578999999999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg 287 (370)
|.+.+|...+ ..++..+.-..||+|+.| -.|.|
T Consensus 78 im~L~PDe~q-~~vy~~~I~p~Lk~G~aL-~FaHG 110 (338)
T COG0059 78 VMILLPDEQQ-KEVYEKEIAPNLKEGAAL-GFAHG 110 (338)
T ss_pred EEEeCchhhH-HHHHHHHhhhhhcCCceE-Eeccc
Confidence 9999996543 345566777788998854 33443
No 142
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.84 E-value=9.5e-05 Score=70.91 Aligned_cols=124 Identities=19% Similarity=0.345 Sum_probs=87.0
Q ss_pred cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|||- ..+|+++|..|...|+.|+.++.. ..++.+..++|
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~------------------------------t~~l~~~~~~A 202 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK------------------------------TKNLAELTKQA 202 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC------------------------------chhHHHHHHhC
Confidence 45799999999997 578999999999999999987532 13688899999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+.++.. .++++.+++ |+|+++||+|.-.+. +|++ .-||-..+ ... ---.
T Consensus 203 DIvI~AvG~----p~~i~~~~i---k~gavVIDvGi~~~~----------~gkl---~GDvd~e~-------v~~-~a~~ 254 (284)
T PRK14190 203 DILIVAVGK----PKLITADMV---KEGAVVIDVGVNRLE----------NGKL---CGDVDFDN-------VKE-KASY 254 (284)
T ss_pred CEEEEecCC----CCcCCHHHc---CCCCEEEEeeccccC----------CCCe---eccCcHHH-------Hhh-hceE
Confidence 999999863 347888775 899999999976641 3443 34663211 111 1246
Q ss_pred EccCCCCccHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDV 353 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~n 353 (370)
+||.-||.-+-+..-+.+.+++.
T Consensus 255 iTPVPGGVGpvT~a~L~~N~~~a 277 (284)
T PRK14190 255 ITPVPGGVGPMTITMLMHNTVEL 277 (284)
T ss_pred ecCCCCCChHHHHHHHHHHHHHH
Confidence 89987776554444444444433
No 143
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=8.2e-05 Score=71.12 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=66.0
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|||-| .+|+++|..|...|+.|...... ..++.+..++|
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~------------------------------T~~l~~~~~~A 201 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIF------------------------------TKDLKAHTKKA 201 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CcCHHHHHhhC
Confidence 358999999999998 89999999999899999876432 13678889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|++++.- .+++..++ .|+|+++||+|--.
T Consensus 202 DIvV~AvGk----p~~i~~~~---vk~gavvIDvGin~ 232 (281)
T PRK14183 202 DIVIVGVGK----PNLITEDM---VKEGAIVIDIGINR 232 (281)
T ss_pred CEEEEecCc----ccccCHHH---cCCCcEEEEeeccc
Confidence 999999863 35788776 58999999998544
No 144
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.82 E-value=2.2e-05 Score=70.57 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=74.4
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhhh--ccccc-----cccccccCCCCCHHHHHhcC
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALAV--KNGII-----DDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~~--~~~~~-----~~~~~~~~~~~~l~ell~~a 250 (370)
+|+|||.|.||+.+|..+...|++|..||+++......... ...+.. ..+.. ...........+++++. .|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 69999999999999999999999999999976542111000 000000 00000 00000111236788877 99
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 313 (370)
|+|+=++|...+.+.-+-++.-+.++++++|...+.+ +....|...+. .+-+..++=.|.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~~ 139 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFFN 139 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-S
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEeccc
Confidence 9999999988776665555566677889887655443 55666766664 233344555553
No 145
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.80 E-value=5e-05 Score=70.91 Aligned_cols=106 Identities=17% Similarity=0.276 Sum_probs=67.4
Q ss_pred cCceEEEEecCchhHHHHHHhccCC---CE-EEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFG---VK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASK 249 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G---~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~ 249 (370)
..++|||||.|.+|+.+++.+...| .+ +++++++..... ......++ ...++++++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKL----------------DQLQARYNVSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHH----------------HHHHHHcCcEEeCChHHHHhc
Confidence 3578999999999999999987665 33 777876421110 01111111 23578888999
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECG 302 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g 302 (370)
+|+|++++|.. ..+.++. +.-..++ +.++|.++-| ++.+.|.+.+..+
T Consensus 67 ~DiViiavp~~-~~~~v~~-~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 67 VDTIVLAMPPS-AHEELLA-ELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred CCEEEEecCHH-HHHHHHH-HHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 99999999943 3343332 2212233 6788988766 5666677666543
No 146
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.79 E-value=0.00012 Score=57.61 Aligned_cols=67 Identities=30% Similarity=0.500 Sum_probs=53.6
Q ss_pred ccccCceEEEEecCchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 251 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 251 (370)
..+++++++|+|.|.+|+.+++.+... +.+|.++|| |
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------------d 56 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------------D 56 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------------C
Confidence 558899999999999999999999988 456766531 9
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
+++.+.+.. +.+.++.++.+++++++++++
T Consensus 57 i~i~~~~~~----~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 57 ILVTATPAG----VPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred EEEEcCCCC----CCchHHHHHhcCCCCEEEecC
Confidence 999887643 345555688899999999874
No 147
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.78 E-value=0.0001 Score=66.61 Aligned_cols=110 Identities=19% Similarity=0.208 Sum_probs=66.1
Q ss_pred cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhc
Q 017490 172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASK 249 (370)
Q Consensus 172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~ 249 (370)
+..++++++.|+|. |.+|+.+++.+...|++|..++|+..+...... .+....+ ..... .....+++.+.+++
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~---~l~~~~~--~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD---SLRARFG--EGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH---HHHhhcC--CcEEEeeCCCHHHHHHHHhc
Confidence 34678999999995 999999999999899999999987543110000 0000000 00000 00112344577889
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL 290 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v 290 (370)
+|+|+.+.|....+ .+. .-...+++.+++|+.+...+
T Consensus 98 ~diVi~at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred CCEEEECCCCCcee--chh--hhcccCceeEEEEccCCCCC
Confidence 99999998765431 111 11134557788888777654
No 148
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=97.78 E-value=3.2e-05 Score=74.74 Aligned_cols=136 Identities=24% Similarity=0.326 Sum_probs=92.8
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH-hcCCE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA-SKADV 252 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell-~~aDi 252 (370)
.-++|||||+|++|+-+|+.+...|..|+..||..-. +...+++ ..+.+.++. +.+|+
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdys-------------------saa~~yg~~~ft~lhdlcerhpDv 111 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYS-------------------SAAEKYGSAKFTLLHDLCERHPDV 111 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhH-------------------HHHHHhcccccccHHHHHhcCCCE
Confidence 3568999999999999999999999999999986411 2233444 456777766 47999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC----CCCCcccCCCc
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF----DPNDPILKFKN 328 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl----~~~~pL~~~~n 328 (370)
|++|+.. ..++.++-.--++++|.|++++++-.-....-+++.+.|-+. .|....-|+ ..++..-.+|=
T Consensus 112 vLlctsi-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpf 184 (480)
T KOG2380|consen 112 VLLCTSI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPF 184 (480)
T ss_pred EEEEehh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCce
Confidence 9999763 234455544456778999999998777767677777776543 344333332 23445555775
Q ss_pred eEEccCCCCc
Q 017490 329 VLITPHVGGV 338 (370)
Q Consensus 329 vilTPHia~~ 338 (370)
|+. -|-.|+
T Consensus 185 Vyd-kvRig~ 193 (480)
T KOG2380|consen 185 VYD-KVRIGY 193 (480)
T ss_pred EEE-Eeeccc
Confidence 555 455554
No 149
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.78 E-value=4.3e-05 Score=73.24 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=64.9
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhcccccccccccc-CCC-CCHHHHHhc
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-GCH-EDIFEFASK 249 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~ell~~ 249 (370)
..+.++++.|+|.|.+|+++++.|...| .+|.+++|+.++...... ...... ... .++.+.+.+
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~-------------~~~~~~~~~~~~~~~~~~~~ 185 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK-------------LFGALGKAELDLELQEELAD 185 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH-------------Hhhhccceeecccchhcccc
Confidence 3578999999999999999999999999 689999998654211000 000000 001 134466788
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+|+|+.++|.......-...-.+..++++.+++++.-.+
T Consensus 186 ~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P 224 (278)
T PRK00258 186 FDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGP 224 (278)
T ss_pred CCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCC
Confidence 999999999653211000111224457777888776644
No 150
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.77 E-value=0.00019 Score=68.71 Aligned_cols=128 Identities=21% Similarity=0.325 Sum_probs=88.2
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||-+ .+|+++|..|...|+.|..+.... .++.+..++|
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------------------------~~l~~~~~~A 201 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------------------------KDLPQVAKEA 201 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 568999999999985 579999999999999999875321 3688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+.+++.. +++..+. .|+|+++||+|--.+. +|++ .-||-... .... --.
T Consensus 202 DIvI~AvG~~----~~i~~~~---vk~GavVIDvGin~~~----------~gkl---~GDvdfe~-------~~~~-a~~ 253 (284)
T PRK14170 202 DILVVATGLA----KFVKKDY---IKPGAIVIDVGMDRDE----------NNKL---CGDVDFDD-------VVEE-AGF 253 (284)
T ss_pred CEEEEecCCc----CccCHHH---cCCCCEEEEccCcccC----------CCCe---ecccchHH-------HHhh-ccE
Confidence 9999998743 5688766 5899999999866531 3544 34662111 0111 136
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQL 357 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~~ 357 (370)
+||-=||.-+-+...+.+.+++..++.
T Consensus 254 iTPVPGGVGpvT~a~L~~N~~~a~~~~ 280 (284)
T PRK14170 254 ITPVPGGVGPMTITMLLANTLKAAKRI 280 (284)
T ss_pred ecCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 788777765555444444444444443
No 151
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=0.00062 Score=65.24 Aligned_cols=127 Identities=20% Similarity=0.249 Sum_probs=87.8
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||-+ .+|+++|..|...|+.|..+... ..++.+..++|
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~------------------------------T~~l~~~~~~A 200 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSK------------------------------TRNLKQLTKEA 200 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCC------------------------------CCCHHHHHhhC
Confidence 457999999999985 67999999999999999987532 13688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+++++- .++++.++ +|+|+++||+|--.+. +|++ .-||-..+- . ----.
T Consensus 201 DIvI~AvG~----p~~i~~~~---vk~GavVIDvGin~~~----------~gkl---~GDVd~~~v-------~-~~a~~ 252 (282)
T PRK14169 201 DILVVAVGV----PHFIGADA---VKPGAVVIDVGISRGA----------DGKL---LGDVDEAAV-------A-PIASA 252 (282)
T ss_pred CEEEEccCC----cCccCHHH---cCCCcEEEEeeccccC----------CCCe---eecCcHHHH-------H-hhccE
Confidence 999999884 35688775 5899999999865431 3443 446632211 1 11246
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQ 356 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~ 356 (370)
+||-=||.-+-+...+.+.+++..++
T Consensus 253 iTPVPGGVGp~T~a~L~~N~~~a~~~ 278 (282)
T PRK14169 253 ITPVPGGVGPMTIASLMAQTVTLAKR 278 (282)
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 89977776554444444444444433
No 152
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.72 E-value=4.4e-05 Score=76.58 Aligned_cols=96 Identities=29% Similarity=0.454 Sum_probs=69.6
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS 248 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~ 248 (370)
.|.++++.|||+|.||.-+|+.|...|. +|++.+|+..+.. +++.+.+ ...++.+.+.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~-----------------~La~~~~~~~~~l~el~~~l~ 237 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE-----------------ELAKKLGAEAVALEELLEALA 237 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-----------------HHHHHhCCeeecHHHHHHhhh
Confidence 4899999999999999999999999995 7999999876531 2222222 3456778899
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcC---CCCcEEEEcCCCcc
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSM---KKGSLLVNIARGGL 289 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~m---k~gailIN~sRg~~ 289 (370)
++|+|+.+ |.+...++..+.+... ++.-++||.+-..-
T Consensus 238 ~~DvViss---Tsa~~~ii~~~~ve~a~~~r~~~livDiavPRd 278 (414)
T COG0373 238 EADVVISS---TSAPHPIITREMVERALKIRKRLLIVDIAVPRD 278 (414)
T ss_pred hCCEEEEe---cCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence 99999999 4455667776654432 11247777765443
No 153
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.72 E-value=0.00011 Score=70.59 Aligned_cols=118 Identities=19% Similarity=0.251 Sum_probs=71.8
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEecc
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 258 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 258 (370)
+|+|||.|.||..+|..|...|++|..++|+.+....... ..+.+.++ ..........+.+++ +.+|+|++++|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~--~g~~~~~~---~~~~~~~~~~~~~~~-~~~d~vila~k 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE--NGLRLEDG---EITVPVLAADDPAEL-GPQDLVILAVK 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH--cCCcccCC---ceeecccCCCChhHc-CCCCEEEEecc
Confidence 6999999999999999999889999999985433110000 00000000 000000112345555 89999999999
Q ss_pred CChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 259 LNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 259 ~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
.. ++..++. ...+.+.+++.+|....| +-.++.+.+.+....+.
T Consensus 76 ~~-~~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 76 AY-QLPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred cc-cHHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 53 4444432 333456677888888777 33456666666655554
No 154
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.72 E-value=7.9e-05 Score=70.68 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=63.6
Q ss_pred CceEEEEecCchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
..+|||||+|+||.++++.+...| .+|++++++.... . . ....+..+++.+||+
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------------------~-~---~~~~~~~~~~~~~D~ 60 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------------------P-F---VYLQSNEELAKTCDI 60 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------------------C-e---EEeCChHHHHHhCCE
Confidence 468999999999999999998665 2599998864321 0 0 012456677889999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
|++|+| ...++.++. +....++++ .+|.+.-| +..+.+.+.+.
T Consensus 61 Vilavk-p~~~~~vl~-~i~~~l~~~-~iIS~~aG--i~~~~l~~~~~ 103 (260)
T PTZ00431 61 IVLAVK-PDLAGKVLL-EIKPYLGSK-LLISICGG--LNLKTLEEMVG 103 (260)
T ss_pred EEEEeC-HHHHHHHHH-HHHhhccCC-EEEEEeCC--ccHHHHHHHcC
Confidence 999988 345555554 233345554 45555444 44666665554
No 155
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=0.00018 Score=69.00 Aligned_cols=80 Identities=15% Similarity=0.326 Sum_probs=66.2
Q ss_pred cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||- ..+|+++|..|...|+.|..++... .++.+..++|
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------------------------~~l~~~~~~A 203 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------------------------QNLPSIVRQA 203 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 46799999999997 5689999999999999999986431 3678889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|+.+++- .+++..++ .|+|+++||+|--.
T Consensus 204 DIvIsAvGk----~~~i~~~~---ik~gavVIDvGin~ 234 (284)
T PRK14177 204 DIIVGAVGK----PEFIKADW---ISEGAVLLDAGYNP 234 (284)
T ss_pred CEEEEeCCC----cCccCHHH---cCCCCEEEEecCcc
Confidence 999999873 35688766 58999999998543
No 156
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00026 Score=68.24 Aligned_cols=131 Identities=19% Similarity=0.243 Sum_probs=89.2
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|||-+ .+|+++|..|...|+.|..+... ..++++..++|
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~------------------------------T~~l~~~~~~A 202 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR------------------------------TQDLASITREA 202 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 468999999999985 67999999999999999887532 13688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+++++-. +++..++ +|+|+++||+|--.+.+.. ++|++ .-||-..+ .... --.
T Consensus 203 DIvIsAvGkp----~~i~~~~---ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~~-------v~~~-a~~ 258 (297)
T PRK14186 203 DILVAAAGRP----NLIGAEM---VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFEE-------VEPV-AAA 258 (297)
T ss_pred CEEEEccCCc----CccCHHH---cCCCCEEEEeccccccccc------cCCce---eCCccHHH-------HHhh-ceE
Confidence 9999998833 5788766 5899999999866532211 13443 34553211 1111 236
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQ 356 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~ 356 (370)
+||--||.-+-+...+.+.+++..++
T Consensus 259 iTPVPGGVGp~T~a~L~~Nl~~a~~~ 284 (297)
T PRK14186 259 ITPVPGGVGPMTVTMLLVNTVLSWQK 284 (297)
T ss_pred ecCCCCCchHHHHHHHHHHHHHHHHH
Confidence 89987877555544444444444433
No 157
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00027 Score=67.60 Aligned_cols=80 Identities=18% Similarity=0.378 Sum_probs=66.0
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|||-+ .+|+++|..|...|+.|..+.... .++.+..++|
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------------------------~~l~~~~~~A 202 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------------------------KNLKEVCKKA 202 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 357999999999985 679999999999999999886421 2688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|+.+++.. ++++.++ .|+|+++||+|--.
T Consensus 203 DIvIsAvGkp----~~i~~~~---ik~gavVIDvGin~ 233 (278)
T PRK14172 203 DILVVAIGRP----KFIDEEY---VKEGAIVIDVGTSS 233 (278)
T ss_pred CEEEEcCCCc----CccCHHH---cCCCcEEEEeeccc
Confidence 9999998743 5788776 58999999997544
No 158
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.70 E-value=0.00019 Score=68.96 Aligned_cols=135 Identities=22% Similarity=0.287 Sum_probs=91.5
Q ss_pred cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||- ..+|+++|..|...|+.|..+.... .++++..++|
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------------------------~~l~~~~~~A 199 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------------------------QDLPAVTRRA 199 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 46799999999997 5689999999999999999875421 3688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|++++.- .++++.++ +|+|+++||+|.-.+.+ ++|+. ...-||- .+ ..... -.
T Consensus 200 DIvIsAvGk----p~~i~~~~---vk~GavVIDVGin~~~~--------~~gk~-~l~GDVd-~~-------v~~~a-~~ 254 (287)
T PRK14173 200 DVLVVAVGR----PHLITPEM---VRPGAVVVDVGINRVGG--------NGGRD-ILTGDVH-PE-------VAEVA-GA 254 (287)
T ss_pred CEEEEecCC----cCccCHHH---cCCCCEEEEccCccccC--------CCCce-eeecccc-Hh-------HHhhC-cE
Confidence 999999873 35788776 48999999999766432 13431 0344664 11 11111 25
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHHHHcCC
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 361 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~~~~g~ 361 (370)
+||-=||.-+-+...+.+.+++..++...|+
T Consensus 255 iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~~ 285 (287)
T PRK14173 255 LTPVPGGVGPMTVAMLMANTVIAALRRRGGR 285 (287)
T ss_pred EecCCCChhHHHHHHHHHHHHHHHHHHccCC
Confidence 7887677655444444555555445544443
No 159
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.69 E-value=0.0001 Score=70.91 Aligned_cols=121 Identities=15% Similarity=0.211 Sum_probs=73.1
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 257 (370)
++|+|+|.|.||..+|..|...|++|..++| ......... ..+...... .+.........+.++....+|+|++++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~--~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRE--RGLVIRSDH-GDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHh--CCeEEEeCC-CeEEecceeecCHHHccCCCCEEEEEe
Confidence 3699999999999999999998999999998 332100000 000000000 000000001235566668999999999
Q ss_pred cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
|.. +++.++ ....+.++++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus 77 k~~-~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 77 KAY-QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred ccc-CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 953 444443 2333446778888888766 44567777777665544
No 160
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.69 E-value=0.00028 Score=69.92 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=99.2
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC------CCCCHHHHHhcCC
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG------CHEDIFEFASKAD 251 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~ell~~aD 251 (370)
++|.|+|.|.+|...+..+..+|++|+.+|..+.+-..-...-..+..+ -+.++..+.. ...+.++.++++|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~Ep--gLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEP--GLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCc--cHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence 4789999999999999999999999999998765421110000011111 1112222111 2357888999999
Q ss_pred EEEEeccCChhhhcccC--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec-CCCCCCCCCCc
Q 017490 252 VVVCCLSLNKQTAGIVN--------KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV-AWTEPFDPNDP 322 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~--------~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV-~~~EPl~~~~p 322 (370)
++++++|..+...+-+| ++..+.++..+++|+=|.-.+-..+.+.+.+.+..-.. -++| +.+|=|-..+.
T Consensus 79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~A 157 (414)
T COG1004 79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSA 157 (414)
T ss_pred EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcch
Confidence 99999996554444444 23556677779999999999999998888887765432 2232 56676666655
Q ss_pred ccC---CCceEE
Q 017490 323 ILK---FKNVLI 331 (370)
Q Consensus 323 L~~---~~nvil 331 (370)
+.+ -+++++
T Consensus 158 v~D~~~PdRIVi 169 (414)
T COG1004 158 VYDFLYPDRIVI 169 (414)
T ss_pred hhhccCCCeEEE
Confidence 544 344554
No 161
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.67 E-value=0.0003 Score=67.58 Aligned_cols=127 Identities=20% Similarity=0.263 Sum_probs=87.0
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||-+ .+|+++|..|...|+.|..+... ..++.+..++|
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~------------------------------T~~L~~~~~~A 203 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK------------------------------THNLSSITSKA 203 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC------------------------------CCCHHHHHhhC
Confidence 357999999999985 57999999999999999987532 13688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+.++.- .+++..++ .|+|+++||+|--.+ .+|++ .-||-..+- ..---.
T Consensus 204 DIvV~AvGk----p~~i~~~~---vk~GavVIDvGin~~----------~~gkl---~GDVd~~~v--------~~~a~~ 255 (288)
T PRK14171 204 DIVVAAIGS----PLKLTAEY---FNPESIVIDVGINRI----------SGNKI---IGDVDFENV--------KSKVKY 255 (288)
T ss_pred CEEEEccCC----CCccCHHH---cCCCCEEEEeecccc----------CCCCe---ECCccHHHH--------HhhceE
Confidence 999999873 35788776 589999999985432 13443 345531111 111136
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQ 356 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~ 356 (370)
+||-=||.-+-+..-+.+.+++..++
T Consensus 256 iTPVPGGVGp~T~a~L~~N~v~a~~~ 281 (288)
T PRK14171 256 ITPVPGGIGPMTIAFLLKNTVKAFKD 281 (288)
T ss_pred eCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 79977777655554444444444433
No 162
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.66 E-value=0.0001 Score=71.95 Aligned_cols=91 Identities=19% Similarity=0.209 Sum_probs=60.1
Q ss_pred cCceEEEEecCchhHHHHHHhcc-CC-CEEEEEcCCCccccccccccchhhhcccccccccc---ccCCCCCHHHHHhcC
Q 017490 176 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD---EKGCHEDIFEFASKA 250 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~-~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~ell~~a 250 (370)
..++|+|||+|.+|+.+++.+.. ++ .+|.+|+|++.+... +. .+... ......++++.+.+|
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~-------~a------~~~~~~g~~~~~~~~~~~av~~a 190 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEA-------LA------AELRAQGFDAEVVTDLEAAVRQA 190 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHH-------HH------HHHHhcCCceEEeCCHHHHHhcC
Confidence 46799999999999999985543 44 589999998655211 00 00000 011236788899999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
|+|+++.|.. +.++..+ .++||+.+.-++
T Consensus 191 DIVi~aT~s~---~pvl~~~---~l~~g~~i~~ig 219 (314)
T PRK06141 191 DIISCATLST---EPLVRGE---WLKPGTHLDLVG 219 (314)
T ss_pred CEEEEeeCCC---CCEecHH---HcCCCCEEEeeC
Confidence 9998887643 5667654 468999544444
No 163
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.66 E-value=0.00022 Score=68.34 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=66.1
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||-+ .+|+++|..|...|+.|..+.... .++.+..++|
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------------------------~nl~~~~~~A 201 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA 201 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 457999999999985 579999999998999999876431 3688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|+.++.- .+++++++ .|+|+++||+|--.
T Consensus 202 DIvIsAvGk----p~~i~~~~---vk~GavVIDvGin~ 232 (282)
T PRK14166 202 DLIIVAAGC----VNLLRSDM---VKEGVIVVDVGINR 232 (282)
T ss_pred CEEEEcCCC----cCccCHHH---cCCCCEEEEecccc
Confidence 999999873 35788776 58999999998544
No 164
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.63 E-value=0.00025 Score=67.92 Aligned_cols=80 Identities=15% Similarity=0.317 Sum_probs=65.7
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|||-+ .+|+++|..|...|+.|..+.... .++.+..++|
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------------------------~dl~~~~k~A 202 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------------------------TDLKSHTTKA 202 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------------------------CCHHHHhhhc
Confidence 467999999999985 679999999999999999876431 3677889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|+++++- .+++..++ .|+|+++||+|--.
T Consensus 203 DIvIsAvGk----p~~i~~~~---vk~gavVIDvGin~ 233 (282)
T PRK14180 203 DILIVAVGK----PNFITADM---VKEGAVVIDVGINH 233 (282)
T ss_pred CEEEEccCC----cCcCCHHH---cCCCcEEEEecccc
Confidence 999999874 35688766 58999999998543
No 165
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.62 E-value=0.00025 Score=68.26 Aligned_cols=80 Identities=21% Similarity=0.417 Sum_probs=66.2
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||-+ .+|+++|..|...|+.|..+.... .++.+..++|
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------------------------~~l~~~~~~A 204 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------------------------RDLADYCSKA 204 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 467999999999985 679999999999999999876421 3688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+|+.+++- .+++..++ .|+|+++||+|--.
T Consensus 205 DIvVsAvGk----p~~i~~~~---ik~gaiVIDVGin~ 235 (294)
T PRK14187 205 DILVAAVGI----PNFVKYSW---IKKGAIVIDVGINS 235 (294)
T ss_pred CEEEEccCC----cCccCHHH---cCCCCEEEEecccc
Confidence 999999874 35688776 57999999998654
No 166
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.62 E-value=0.0001 Score=72.82 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=69.3
Q ss_pred hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEEEEeccCChhhhcc
Q 017490 189 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVVVCCLSLNKQTAGI 266 (370)
Q Consensus 189 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV~l~lP~t~~t~~l 266 (370)
|..+|..|...|++|++||++........ .+.....+ ...+..+++++||+|++++|....++.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~-------------~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~V 98 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL-------------WKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEI 98 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH-------------HHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHH
Confidence 78999999989999999998754210000 00011111 2347778889999999999966547777
Q ss_pred cCHHHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 017490 267 VNKSFLSSMKKGSLLVNIARGGLLDY-EAIAHYLE 300 (370)
Q Consensus 267 i~~~~l~~mk~gailIN~sRg~~vd~-~aL~~aL~ 300 (370)
+. +....+++|+++||++.+..... +.+.+.+.
T Consensus 99 l~-~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 99 AK-NILPHLPENAVICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred HH-HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence 73 67788999999999999877655 55666664
No 167
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.60 E-value=8e-05 Score=75.36 Aligned_cols=92 Identities=17% Similarity=0.350 Sum_probs=64.4
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhcccccccccccc-----CCCCCHHHHH
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-----GCHEDIFEFA 247 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~ell 247 (370)
.+.|+++.|||.|.+|+.+|+.|...|. +|++++|+..+.. .+..++ ..++++.+.+
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~-----------------~La~~~~~~~~~~~~~l~~~l 240 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQ-----------------KITSAFRNASAHYLSELPQLI 240 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHH-----------------HHHHHhcCCeEecHHHHHHHh
Confidence 5889999999999999999999999996 7999999865421 111111 1235667789
Q ss_pred hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490 248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287 (370)
Q Consensus 248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg 287 (370)
.++|+|+.|.+. ...+|..+.+. .+.-++||.|-.
T Consensus 241 ~~aDiVI~aT~a---~~~vi~~~~~~--~~~~~~iDLavP 275 (414)
T PRK13940 241 KKADIIIAAVNV---LEYIVTCKYVG--DKPRVFIDISIP 275 (414)
T ss_pred ccCCEEEECcCC---CCeeECHHHhC--CCCeEEEEeCCC
Confidence 999999999653 34567765542 123466666543
No 168
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.60 E-value=8.5e-05 Score=72.19 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=65.7
Q ss_pred cCceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhcccccccccccc-C-CCCCHHHHHhcCC
Q 017490 176 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-G-CHEDIFEFASKAD 251 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~ell~~aD 251 (370)
..++++|||.|.+|+..++.+.. ++. +|.+|+|++.+... +. ....... . ...+.++++.++|
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~-------~a------~~~~~~~~~~~~~~~~~av~~aD 190 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAA-------FC------AHARALGPTAEPLDGEAIPEAVD 190 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHH-------HH------HHHHhcCCeeEECCHHHHhhcCC
Confidence 56799999999999999998864 665 69999998654211 00 0010000 0 1357889999999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+|+.+.|.+ +.+++. .+|||+.++.+|.-.
T Consensus 191 iVitaT~s~---~Pl~~~----~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 191 LVVTATTSR---TPVYPE----AARAGRLVVAVGAFT 220 (304)
T ss_pred EEEEccCCC---CceeCc----cCCCCCEEEecCCCC
Confidence 999997744 467764 269999999998543
No 169
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.00036 Score=66.93 Aligned_cols=122 Identities=18% Similarity=0.292 Sum_probs=86.3
Q ss_pred cccccCceEEEEec-CchhHHHHHHhcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh
Q 017490 172 GETLLGKTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 248 (370)
Q Consensus 172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~--~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 248 (370)
+.++.||++.|||- +.+|+++|..|.. .|+.|..+... ..++.+..+
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~------------------------------T~~l~~~~k 202 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG------------------------------TRDLAAHTR 202 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC------------------------------CCCHHHHHH
Confidence 46799999999997 5689999999987 78999887542 136888999
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCc
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 328 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~n 328 (370)
+||+|+.++.-. +++..++ +|+|+++||+|.-.+ .+|++ .-||- .+ .....
T Consensus 203 ~ADIvV~AvGkp----~~i~~~~---ik~GavVIDvGin~~----------~~gkl---~GDvd-~~-------v~~~a- 253 (284)
T PRK14193 203 RADIIVAAAGVA----HLVTADM---VKPGAAVLDVGVSRA----------GDGKL---VGDVH-PD-------VWEVA- 253 (284)
T ss_pred hCCEEEEecCCc----CccCHHH---cCCCCEEEEcccccc----------CCCcE---EeecC-Hh-------HHhhC-
Confidence 999999998743 5788776 589999999986653 23443 45775 22 11222
Q ss_pred eEEccCCCCccHHHHHHHHHHHHH
Q 017490 329 VLITPHVGGVTEHSYRSMAKVVGD 352 (370)
Q Consensus 329 vilTPHia~~t~~~~~~~~~~~~~ 352 (370)
-.+||-=||.-+-+...+.+.+++
T Consensus 254 ~~iTPVPGGVGp~T~a~L~~N~~~ 277 (284)
T PRK14193 254 GAVSPNPGGVGPMTRAFLLTNVVE 277 (284)
T ss_pred CEEeCCCCChhHHHHHHHHHHHHH
Confidence 258998777655444444444333
No 170
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.58 E-value=0.00034 Score=67.54 Aligned_cols=135 Identities=21% Similarity=0.260 Sum_probs=90.4
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||-+ .+|+++|..|...|+.|+.+.... .++++..++|
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------------------------~nl~~~~~~A 211 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------------------------PDPESIVREA 211 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 468999999999985 579999999999999999985421 3688899999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+.++.- .+++..++ +|+|+++||+|--..-+. ...+|. ...-||...+- ...--.
T Consensus 212 DIvv~AvGk----~~~i~~~~---vk~gavVIDvGin~~~~~-----~~~~g~--kl~GDvd~e~v--------~~~a~~ 269 (299)
T PLN02516 212 DIVIAAAGQ----AMMIKGDW---IKPGAAVIDVGTNAVSDP-----SKKSGY--RLVGDVDFAEV--------SKVAGW 269 (299)
T ss_pred CEEEEcCCC----cCccCHHH---cCCCCEEEEeeccccCcc-----cccCCC--ceEcCcChHHh--------hhhceE
Confidence 999999864 36888776 589999999985442211 111121 13456642111 111235
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQLH 358 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~~~ 358 (370)
+||--||.-+-+...+.+.+++..++++
T Consensus 270 iTPVPGGVGp~T~a~L~~N~v~a~~~~~ 297 (299)
T PLN02516 270 ITPVPGGVGPMTVAMLLKNTVDGAKRVF 297 (299)
T ss_pred ecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 8997777655555555555555555544
No 171
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.58 E-value=0.00084 Score=63.94 Aligned_cols=120 Identities=26% Similarity=0.380 Sum_probs=86.7
Q ss_pred cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++|+++.|||-++ +|++++..|...++.|.+...+. .++.+..++|
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------------------------~~l~~~~k~A 200 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------------------------KDLASITKNA 200 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------------------------CCHHHHhhhC
Confidence 4589999999999986 58999999999999999986532 3677889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+.++-. .+++.+++ .|+|+++|+++--.+-+ +++ .-||-..+ .....-.
T Consensus 201 DIvv~AvG~----p~~i~~d~---vk~gavVIDVGinrv~~----------~kl---~GDVdf~~--------v~~~a~~ 252 (283)
T COG0190 201 DIVVVAVGK----PHFIKADM---VKPGAVVIDVGINRVND----------GKL---VGDVDFDS--------VKEKASA 252 (283)
T ss_pred CEEEEecCC----cccccccc---ccCCCEEEecCCccccC----------Cce---EeeccHHH--------HHHhhcc
Confidence 999999763 35777655 68999999998765433 444 45764332 2223345
Q ss_pred EccCCCCccHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKV 349 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~ 349 (370)
+||--||.-+-+...+.+.
T Consensus 253 iTPVPGGVGPmTvamLl~N 271 (283)
T COG0190 253 ITPVPGGVGPMTVAMLLEN 271 (283)
T ss_pred cCCCCCccCHHHHHHHHHH
Confidence 7887778766554433333
No 172
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.57 E-value=0.00036 Score=66.83 Aligned_cols=81 Identities=19% Similarity=0.319 Sum_probs=66.4
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|||-+ .+|+++|..|...|+.|..+.... .++.+..++|
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------------------------~nl~~~~~~A 201 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------------------------ADLAGEVGRA 201 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------------------------CCHHHHHhhC
Confidence 357899999999975 679999999998899999875421 3678889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 289 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~ 289 (370)
|+|+.+++- .+++..++ .|+|+++||+|--..
T Consensus 202 DIvI~AvGk----~~~i~~~~---ik~gaiVIDvGin~~ 233 (282)
T PRK14182 202 DILVAAIGK----AELVKGAW---VKEGAVVIDVGMNRL 233 (282)
T ss_pred CEEEEecCC----cCccCHHH---cCCCCEEEEeeceec
Confidence 999999873 45788776 589999999986553
No 173
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.56 E-value=0.00033 Score=68.97 Aligned_cols=130 Identities=19% Similarity=0.274 Sum_probs=86.8
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.++.||++.|||-+ .+|+++|..|...|+.|..+... ..++.+..++|
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~------------------------------T~nl~~~~r~A 275 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR------------------------------TKNPEEITREA 275 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC------------------------------CCCHHHHHhhC
Confidence 467999999999975 67999999999999999987532 13688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|||+.++.- .+++..++ .|+|+++||+|--.+-+.. =++|. ...-||-..+-. + ---.
T Consensus 276 DIVIsAvGk----p~~i~~d~---vK~GAvVIDVGIn~~~~~~-----~~~g~--klvGDVdfe~v~-------~-~as~ 333 (364)
T PLN02616 276 DIIISAVGQ----PNMVRGSW---IKPGAVVIDVGINPVEDAS-----SPRGY--RLVGDVCYEEAC-------K-VASA 333 (364)
T ss_pred CEEEEcCCC----cCcCCHHH---cCCCCEEEecccccccccc-----ccCCC--eEEecCcHHHHH-------h-hccc
Confidence 999999873 35788776 5899999999855431100 01121 245577433211 0 1134
Q ss_pred EccCCCCccHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDV 353 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~n 353 (370)
+||-=||.-+-+..-+.+.+++.
T Consensus 334 ITPVPGGVGpmTva~Ll~N~~~a 356 (364)
T PLN02616 334 VTPVPGGVGPMTIAMLLSNTLTS 356 (364)
T ss_pred cCCCCCchHHHHHHHHHHHHHHH
Confidence 78877887655544444444433
No 174
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.56 E-value=0.00022 Score=67.98 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=73.1
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHH-HHhcCC
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFE-FASKAD 251 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~e-ll~~aD 251 (370)
..+++++|+|.|.+|++++..+...|++|.+++|+..+...-. +.....+ ...++++ .+.++|
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la--------------~~~~~~~~~~~~~~~~~~~~~~D 180 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELA--------------ERFQRYGEIQAFSMDELPLHRVD 180 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--------------HHHhhcCceEEechhhhcccCcc
Confidence 5688999999999999999999999999999998754321000 0000000 0112333 235799
Q ss_pred EEEEeccCC--hhhhc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 252 VVVCCLSLN--KQTAG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 252 iV~l~lP~t--~~t~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
+|+.++|.. +.... .++ .+.++++.+++|+...+... .|.+..++..+.
T Consensus 181 ivInatp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~ 232 (270)
T TIGR00507 181 LIINATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK 232 (270)
T ss_pred EEEECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe
Confidence 999999974 22211 222 34578999999998876533 477776666554
No 175
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.56 E-value=0.00033 Score=68.59 Aligned_cols=132 Identities=23% Similarity=0.341 Sum_probs=87.6
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.+++||++.|||-+ .+|+++|..|...|+.|..+.... .++++..++|
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------------------------~nl~~~~~~A 258 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------------------------KDPEQITRKA 258 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------------------------CCHHHHHhhC
Confidence 467999999999985 579999999999999998875321 3578889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|||+.++.- .+++..++ +|+|+++||+|--.+-+... ++|. ...-||..++-.+ ---.
T Consensus 259 DIvIsAvGk----p~~v~~d~---vk~GavVIDVGin~~~~~~~-----~~g~--klvGDVdfe~v~~--------~as~ 316 (345)
T PLN02897 259 DIVIAAAGI----PNLVRGSW---LKPGAVVIDVGTTPVEDSSC-----EFGY--RLVGDVCYEEALG--------VASA 316 (345)
T ss_pred CEEEEccCC----cCccCHHH---cCCCCEEEEccccccccccc-----cCCC--eeEecccHHHHHh--------hccc
Confidence 999999874 35788776 58999999998654311000 1131 2456775333211 1135
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHH
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVAL 355 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~ 355 (370)
+||-=||.-+-+..-+.+.+++..+
T Consensus 317 iTPVPGGVGpmTvamLm~N~~~a~~ 341 (345)
T PLN02897 317 ITPVPGGVGPMTITMLLCNTLDAAK 341 (345)
T ss_pred cCCCCCchhHHHHHHHHHHHHHHHH
Confidence 7887677655444444444444333
No 176
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00041 Score=66.56 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=65.2
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 246 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 246 (370)
+.++.||++.|||-+ .+|+++|..|... ++.|..+... ..++.+.
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~------------------------------T~~l~~~ 197 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ------------------------------SENLTEI 197 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC------------------------------CCCHHHH
Confidence 457999999999985 5799999999887 7888876532 1368889
Q ss_pred HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+++||+|+.+++-. +++..++ +|+|+++||+|--.
T Consensus 198 ~~~ADIvV~AvG~p----~~i~~~~---ik~GavVIDvGin~ 232 (287)
T PRK14181 198 LKTADIIIAAIGVP----LFIKEEM---IAEKAVIVDVGTSR 232 (287)
T ss_pred HhhCCEEEEccCCc----CccCHHH---cCCCCEEEEecccc
Confidence 99999999998743 5788776 58999999998655
No 177
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.54 E-value=0.00015 Score=71.09 Aligned_cols=102 Identities=17% Similarity=0.241 Sum_probs=61.8
Q ss_pred EEEEecCchhHHHHHHhc-cCCCEEEEEcCCCccccccccccchhhhcccccc--ccccccC--CCCCHHHHHhcCCEEE
Q 017490 180 VFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIID--DLVDEKG--CHEDIFEFASKADVVV 254 (370)
Q Consensus 180 vGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~l~ell~~aDiV~ 254 (370)
|||+|+|.||+.+++.+. .-+++|+++................|..-..... ....+.+ ...++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 699999999999999875 4578888765421110000000000000000000 0001111 1346899999999999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 284 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~ 284 (370)
.|. +.+.+..+++.+.+|+++++|+-.
T Consensus 81 e~T---p~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 81 DAT---PGGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred ECC---CCCCChhhHHHHHhCCcCEEEECC
Confidence 985 456778899999999999988854
No 178
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.00038 Score=67.20 Aligned_cols=80 Identities=14% Similarity=0.316 Sum_probs=64.6
Q ss_pred cccccCceEEEEecC-chhHHHHHHhcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 246 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~----~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 246 (370)
+.++.||++.|||-+ .+|+++|..|.. .|+.|....... .++++.
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------------------------~~l~~~ 203 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------------------------KDIPSY 203 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------------------------hhHHHH
Confidence 357999999999985 679999999876 588888765321 358889
Q ss_pred HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+++||+|+.+++.. ++|.++++ |+|+++||+|-..
T Consensus 204 ~~~ADIvI~Avg~~----~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 204 TRQADILIAAIGKA----RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred HHhCCEEEEecCcc----CccCHHHc---CCCCEEEEeeccc
Confidence 99999999998633 67888876 9999999998544
No 179
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.52 E-value=0.00039 Score=66.73 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=65.3
Q ss_pred cccccCceEEEEecC-chhHHHHHHhcc----CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRP----FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 246 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~----~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 246 (370)
+.++.||++.|||-+ .+|+++|..|.. .|++|..+..+. .++.+.
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------------------------~~l~~~ 201 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------------------------PDLAEE 201 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------------------------hhHHHH
Confidence 457899999999985 679999999987 789998875321 368889
Q ss_pred HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+++||+|+.+++ ..+++.++++ |+|+++||+|--.
T Consensus 202 ~~~ADIVI~AvG----~p~li~~~~v---k~GavVIDVGi~~ 236 (286)
T PRK14184 202 CREADFLFVAIG----RPRFVTADMV---KPGAVVVDVGINR 236 (286)
T ss_pred HHhCCEEEEecC----CCCcCCHHHc---CCCCEEEEeeeec
Confidence 999999999985 3457888776 9999999998443
No 180
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.50 E-value=0.00031 Score=66.60 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=69.6
Q ss_pred HHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCH
Q 017490 192 LAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNK 269 (370)
Q Consensus 192 vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~ 269 (370)
+|+.|+..| .+|+++|+++...... ... +..+. ...+ .+.++++|+|++|+|.. .+..++ +
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a--------~~~----g~~~~--~~~~-~~~~~~~DlvvlavP~~-~~~~~l-~ 63 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAA--------LEL----GIIDE--ASTD-IEAVEDADLVVLAVPVS-AIEDVL-E 63 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHH--------HHT----TSSSE--EESH-HHHGGCCSEEEE-S-HH-HHHHHH-H
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHH--------HHC----CCeee--ccCC-HhHhcCCCEEEEcCCHH-HHHHHH-H
Confidence 466777666 7999999876542110 000 01110 1122 56789999999999954 455554 3
Q ss_pred HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEe-cCCCC---CCCCCCcccCCCceEEccCCC
Q 017490 270 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGID-VAWTE---PFDPNDPILKFKNVLITPHVG 336 (370)
Q Consensus 270 ~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lD-V~~~E---Pl~~~~pL~~~~nvilTPHia 336 (370)
+....+++|+++++++.-..--.+++.+.+. ......+.= -|.+| |...+..|+.-.++++||+-.
T Consensus 64 ~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 64 EIAPYLKPGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp HHHCGS-TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred HhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 4556699999999998876544555555555 222222211 12222 222355788888999999855
No 181
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.50 E-value=0.00017 Score=70.70 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=63.4
Q ss_pred CceEEEEecCchhHHHHHHhcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcC
Q 017490 177 GKTVFILGFGNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA 250 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~--~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a 250 (370)
-+++||||+|.+|+..++.+.. ...+|.+|||+..+... +. +...+.+ ...+.++++++|
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~-------~~-------~~~~~~g~~v~~~~~~~eav~~a 193 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREK-------FA-------LRASDYEVPVRAATDPREAVEGC 193 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHH-------HH-------HHHHhhCCcEEEeCCHHHHhccC
Confidence 4789999999999997766543 24589999998765211 00 0000111 246899999999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
|+|++|+|. ...++..+. +|||+.+..+|.
T Consensus 194 DiVitaT~s---~~P~~~~~~---l~~g~~v~~vGs 223 (325)
T TIGR02371 194 DILVTTTPS---RKPVVKADW---VSEGTHINAIGA 223 (325)
T ss_pred CEEEEecCC---CCcEecHHH---cCCCCEEEecCC
Confidence 999999774 456776654 599999999984
No 182
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.45 E-value=0.00034 Score=68.71 Aligned_cols=92 Identities=13% Similarity=0.170 Sum_probs=61.7
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
.+.|+++.|||.|.||+.+|+.|...|. +|++.+|+....+ | .+. ....-+++.++|+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~--------~-------~~~------~~~~~~~~~~~Dv 229 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP--------Y-------RTV------VREELSFQDPYDV 229 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc--------h-------hhh------hhhhhhcccCCCE
Confidence 5899999999999999999999999996 6999999864310 0 000 0011144578999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg 287 (370)
|+.+...|.....++..+.++..++ -++||.|=.
T Consensus 230 VIs~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvP 263 (338)
T PRK00676 230 IFFGSSESAYAFPHLSWESLADIPD-RIVFDFNVP 263 (338)
T ss_pred EEEcCCcCCCCCceeeHHHHhhccC-cEEEEecCC
Confidence 9987433444445667666654332 367776544
No 183
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.45 E-value=0.00031 Score=64.23 Aligned_cols=111 Identities=24% Similarity=0.293 Sum_probs=70.2
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC---Cccccccccccchh------------hhcccccc-cccc
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS---WASHSQVSCQSSAL------------AVKNGIID-DLVD 235 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~---~~~~~~~~~~~~~~------------~~~~~~~~-~~~~ 235 (370)
..|..++|+|+|+|.+|..+|+.|...|. ++..+|++ ............+. ...+.... +...
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 46888999999999999999999999999 69999987 21110000000000 00000000 0000
Q ss_pred ccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490 236 EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 284 (370)
Q Consensus 236 ~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~ 284 (370)
.....+++++++.++|+|+-| ..+.+++.++.......++...++...
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 000123456678899999998 578889998888888888876666643
No 184
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.45 E-value=0.00064 Score=65.60 Aligned_cols=134 Identities=16% Similarity=0.261 Sum_probs=87.1
Q ss_pred cccccCceEEEEec-CchhHHHHHHhccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490 172 GETLLGKTVFILGF-GNIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 246 (370)
Q Consensus 172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 246 (370)
+.++.||++.|||- ..+|+++|..|... ++.|..+... ..++.+.
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~------------------------------T~~l~~~ 205 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR------------------------------SKNLARH 205 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC------------------------------CcCHHHH
Confidence 56899999999997 56899999999876 7888886432 1367888
Q ss_pred HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCC
Q 017490 247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKF 326 (370)
Q Consensus 247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~ 326 (370)
.++||+|+.++.- .+++..++ +|+|+++||+|.-.+.+. ..+|+.. ..-||-..+ ..+.
T Consensus 206 ~~~ADIvVsAvGk----p~~i~~~~---ik~gavVIDvGin~~~~~------~~~g~~~-~~GDVdfe~-------v~~~ 264 (297)
T PRK14168 206 CQRADILIVAAGV----PNLVKPEW---IKPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDFDA-------VKEI 264 (297)
T ss_pred HhhCCEEEEecCC----cCccCHHH---cCCCCEEEecCCCccCcc------ccCCCcc-eeccccHHH-------HHhh
Confidence 9999999999863 35788776 589999999986553211 1223310 234553211 1111
Q ss_pred CceEEccCCCCccHHHHHHHHHHHHHHHHHH
Q 017490 327 KNVLITPHVGGVTEHSYRSMAKVVGDVALQL 357 (370)
Q Consensus 327 ~nvilTPHia~~t~~~~~~~~~~~~~ni~~~ 357 (370)
--.+||--||.-+-+...+.+.+++..+++
T Consensus 265 -a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~ 294 (297)
T PRK14168 265 -AGKITPVPGGVGPMTIAMLMRNTLKSAKFH 294 (297)
T ss_pred -ccEecCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 135789767765555444455555444443
No 185
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.43 E-value=0.00071 Score=65.17 Aligned_cols=80 Identities=15% Similarity=0.299 Sum_probs=64.1
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 246 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 246 (370)
+.++.||++.|||-+ .+|+++|..|... ++.|..+... ..++.+.
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~nl~~~ 201 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR------------------------------SKNLKKE 201 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC------------------------------CCCHHHH
Confidence 357999999999985 6799999999876 6888886432 1368888
Q ss_pred HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
.++||+|+.+++-. +++..++ .|+|+++||+|--.
T Consensus 202 ~~~ADIvIsAvGkp----~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 202 CLEADIIIAALGQP----EFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred HhhCCEEEEccCCc----CccCHHH---cCCCCEEEEecCcc
Confidence 99999999998743 4687765 58999999998654
No 186
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.42 E-value=0.00036 Score=71.99 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=51.4
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccccc----CCCCCHHHHH
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK----GCHEDIFEFA 247 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~ell 247 (370)
+..+.+++++|+|.|.+|+++++.+...|++|.+++|+..+.. ++.... ....++.+ +
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~-----------------~la~~~~~~~~~~~~~~~-l 388 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAE-----------------ALASRCQGKAFPLESLPE-L 388 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------HHHHHhccceechhHhcc-c
Confidence 4567899999999999999999999999999999998754311 111111 01122222 5
Q ss_pred hcCCEEEEeccCCh
Q 017490 248 SKADVVVCCLSLNK 261 (370)
Q Consensus 248 ~~aDiV~l~lP~t~ 261 (370)
.++|+|++|+|...
T Consensus 389 ~~~DiVInatP~g~ 402 (477)
T PRK09310 389 HRIDIIINCLPPSV 402 (477)
T ss_pred CCCCEEEEcCCCCC
Confidence 68999999999753
No 187
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.41 E-value=0.0015 Score=63.73 Aligned_cols=162 Identities=15% Similarity=0.246 Sum_probs=117.9
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc--ccCCCCCHHHHH---hcCCE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD--EKGCHEDIFEFA---SKADV 252 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell---~~aDi 252 (370)
..+|+||++.||+.++-.....|+.|.+|+|+.++-.. + +....+ ......+++++. +.--+
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~-------f------laneak~~~i~ga~S~ed~v~klk~PR~ 73 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDE-------F------LANEAKGTKIIGAYSLEDFVSKLKKPRV 73 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHH-------H------HHHhhcCCcccCCCCHHHHHHhcCCCcE
Confidence 46899999999999999999999999999998765200 0 000111 111446777764 56788
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEc
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLIT 332 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilT 332 (370)
|++.+-.-.....+|. +....|.+|-++|+-+....-|+..-.+.|....|-..+.-|...|--.-..|-+ .
T Consensus 74 iillvkAG~pVD~~I~-~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl-------M 145 (487)
T KOG2653|consen 74 IILLVKAGAPVDQFIE-ELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL-------M 145 (487)
T ss_pred EEEEeeCCCcHHHHHH-HHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc-------C
Confidence 8888776655666654 6778899999999999999999999999999999999999998877532222321 2
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHcCCCC
Q 017490 333 PHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363 (370)
Q Consensus 333 PHia~~t~~~~~~~~~~~~~ni~~~~~g~~~ 363 (370)
| |-+.+++..+-.++.+-.-...+|+|-
T Consensus 146 p---Gg~~~Awp~ik~ifq~iaakv~~~epC 173 (487)
T KOG2653|consen 146 P---GGSKEAWPHIKDIFQKIAAKVSDGEPC 173 (487)
T ss_pred C---CCChHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3 667788888777766655555566664
No 188
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.35 E-value=0.0027 Score=59.20 Aligned_cols=124 Identities=19% Similarity=0.171 Sum_probs=72.5
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccc----cccccchhhhccccccccccccCCCCCHHHHH-
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ----VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA- 247 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell- 247 (370)
.++.|++|.|.|+|++|+.+|+.|..+|++|+++..+...... .......+....+.+.... . ....+.++++
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~-~-~~~~~~~~i~~ 104 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFP-G-AERITNEELLE 104 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCC-C-ceecCCcccee
Confidence 5689999999999999999999999999999954332111000 0000000000011000000 0 0011223332
Q ss_pred hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490 248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG 306 (370)
Q Consensus 248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g 306 (370)
.+||+++-|.+ .+.++.+...+++ =.+++-.+.+++ . ....+.|+++.+..
T Consensus 105 ~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~ 155 (227)
T cd01076 105 LDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVLV 155 (227)
T ss_pred ecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEE
Confidence 37899988754 3467888888886 345556666666 4 66678888888863
No 189
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.35 E-value=0.001 Score=64.20 Aligned_cols=80 Identities=18% Similarity=0.349 Sum_probs=63.9
Q ss_pred cccccCceEEEEecC-chhHHHHHHhccC----CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490 172 GETLLGKTVFILGFG-NIGVELAKRLRPF----GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 246 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG-~IG~~vA~~l~~~----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 246 (370)
+.+++||++.|||-+ .+|+++|..|... ++.|..+... ..++.+.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~------------------------------T~~l~~~ 201 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR------------------------------TDDLAAK 201 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC------------------------------CCCHHHH
Confidence 457999999999985 6799999999765 7899886432 1368888
Q ss_pred HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
.++||+|+.++.- .+++..++ +|+|+++||+|--.
T Consensus 202 ~~~ADIvIsAvGk----p~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 202 TRRADIVVAAAGV----PELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred HhhCCEEEEccCC----cCccCHHH---cCCCCEEEEccccc
Confidence 9999999998763 34788766 58999999998554
No 190
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00065 Score=67.88 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=71.7
Q ss_pred ceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490 178 KTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
++|.|||+|.||+.+|..|.+.| .+|++.||+..+....... . .+.+....-.......+.+++++.|+|+.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~-----~-~~~v~~~~vD~~d~~al~~li~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL-----I-GGKVEALQVDAADVDALVALIKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh-----c-cccceeEEecccChHHHHHHHhcCCEEEEe
Confidence 57899999999999999999888 8999999986542111000 0 000000000111234678899999999999
Q ss_pred ccCChhhhcccCHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCCc
Q 017490 257 LSLNKQTAGIVNKSFL-SSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 304 (370)
Q Consensus 257 lP~t~~t~~li~~~~l-~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i 304 (370)
+|.. ++...+ +.++.|.-.+++|-.+.-- .++-+..++..+
T Consensus 76 ~p~~------~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agi 117 (389)
T COG1748 76 APPF------VDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGI 117 (389)
T ss_pred CCch------hhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCe
Confidence 9965 233444 4567788888887665432 444444444443
No 191
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.23 E-value=0.00047 Score=67.60 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=63.6
Q ss_pred cCceEEEEecCchhHHHHHHhc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 176 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~-~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
..++++|||.|.+|+..++.+. ..++ +|.+++|++++...-.. .+. .....+...+.+++++++++|+|
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~---~~~------~~~~~~~~~~~~~~~~~~~aDiV 196 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQ---EIQ------SKFNTEIYVVNSADEAIEEADII 196 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHH---HHH------HhcCCcEEEeCCHHHHHhcCCEE
Confidence 4678999999999999887764 4565 69999998655211000 000 00000001246789999999999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
+++.|.. ..++. +.+|+|+.++.++.
T Consensus 197 i~aT~s~---~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 197 VTVTNAK---TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred EEccCCC---CcchH----HhcCCCcEEEecCC
Confidence 9998744 45665 34699999998865
No 192
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.22 E-value=0.0028 Score=61.69 Aligned_cols=121 Identities=20% Similarity=0.141 Sum_probs=73.1
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccCCCCCHHHHHhcCCEEEEe
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
++|+|||.|.||..+|.+|...|++|.++.|..... .. ...+.... ...+. ........+. +.+..+|+|+++
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~---~~-~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~D~vila 79 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEA---VR-ENGLQVDS-VHGDFHLPPVQAYRSA-EDMPPCDWVLVG 79 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHH---HH-hCCeEEEe-CCCCeeecCceEEcch-hhcCCCCEEEEE
Confidence 589999999999999999999999999998864221 00 00000000 00000 0000001122 245789999999
Q ss_pred ccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 307 (370)
Q Consensus 257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga 307 (370)
+|.. ++...+ +.....+++++.++....| +-.++.|.+.+...++.++
T Consensus 80 vK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 80 LKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred ecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 9954 333332 2333446788888888766 4466777778776676554
No 193
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.22 E-value=0.00062 Score=66.82 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=64.9
Q ss_pred cCceEEEEecCchhHHHHHHhc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 176 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~-~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
..++++|||.|.+|+..++.+. ..+. +|.+|+|+..+...-.. .+. .....+.....++++.+.+||+|
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~---~~~------~~~g~~v~~~~~~~~av~~aDiV 198 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALAL---QLS------SLLGIDVTAATDPRAAMSGADII 198 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHH---HHH------hhcCceEEEeCCHHHHhccCCEE
Confidence 3579999999999999999886 4675 69999998765211000 000 00000011246788999999999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
+++.|. ...++..+. +|+|+.+..++.
T Consensus 199 vtaT~s---~~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 199 VTTTPS---ETPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred EEecCC---CCcEecHHH---cCCCcEEEeeCC
Confidence 999775 345777654 689998887763
No 194
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.21 E-value=0.0036 Score=59.28 Aligned_cols=127 Identities=15% Similarity=0.049 Sum_probs=74.8
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEE-cCCCccccc-cccc--c---chhhhcccc-cccccccc--CCCC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQ-VSCQ--S---SALAVKNGI-IDDLVDEK--GCHE 241 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~-dr~~~~~~~-~~~~--~---~~~~~~~~~-~~~~~~~~--~~~~ 241 (370)
+.+++|+||.|-|+|++|+.+|+.|..+|++|+++ |.+..-..+ -.+. . .++....+. +....... ....
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 36789999999999999999999999999999954 422110000 0000 0 000000000 00010000 0111
Q ss_pred CHHHHH-hcCCEEEEeccCChhhhcccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 242 DIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK--KGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 242 ~l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~mk--~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
+.++++ .+|||++-| .+.+.|+.+..++++ .=.+++-.+.+++-. +-.+.|.++.+.
T Consensus 113 ~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~ 172 (254)
T cd05313 113 EGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL 172 (254)
T ss_pred CCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 333433 489999877 467889998888874 345666777777644 566788888776
No 195
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.20 E-value=0.00073 Score=65.84 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=69.9
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccc--ccccccCCCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID--DLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
++|+|+|.|.-|.++|+.|...|.+|..|.|+++.... ... -+.....+. .+........++.++++.||+|++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~-i~~---~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~ 77 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAE-INE---TRENPKYLPGILLPPNLKATTDLAEALDGADIIVI 77 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHH-HHh---cCcCccccCCccCCcccccccCHHHHHhcCCEEEE
Confidence 57999999999999999999999999999876432100 000 000000000 011111234689999999999999
Q ss_pred eccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC
Q 017490 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD 291 (370)
Q Consensus 256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd 291 (370)
.+|. ...+.++.. .-..+++++.+|+++-|=-.+
T Consensus 78 avPs-~~~r~v~~~-l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 78 AVPS-QALREVLRQ-LKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred ECCh-HHHHHHHHH-HhhhccCCCeEEEEeccccCC
Confidence 9993 344444322 224578999999999775443
No 196
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.19 E-value=0.0012 Score=71.49 Aligned_cols=132 Identities=19% Similarity=0.171 Sum_probs=82.4
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hccccccc-----cccccCCCCCHHHHHhc
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD-----LVDEKGCHEDIFEFASK 249 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~-----~~~~~~~~~~l~ell~~ 249 (370)
++|+|||.|.||..+|..+...|++|+.||++.......... ...+. ...+...+ .........++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 589999999999999999999999999999886542110000 00000 00000000 00000012355 45799
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 313 (370)
||+|+=++|-..+.+.-+-++.=+.++++++|-.. .+.+....|.+.+.. +-+.+++--|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasN--TSsl~i~~la~~~~~-p~r~~g~Hff~ 453 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASN--TSTISISLLAKALKR-PENFCGMHFFN 453 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEc--CCCCCHHHHHhhcCC-CccEEEEecCC
Confidence 99999999998887776666666778999888543 344566777777753 33445666554
No 197
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.18 E-value=0.001 Score=64.12 Aligned_cols=104 Identities=17% Similarity=0.164 Sum_probs=62.3
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
.+.++++.|+|.|.+|++++..|...|+ +|.++||+..+...-.. .+.... .. .......++.+.+.++|+
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~---~l~~~~---~~--~~~~~~~~~~~~~~~aDi 195 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALAD---ELNARF---PA--ARATAGSDLAAALAAADG 195 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH---HHHhhC---CC--eEEEeccchHhhhCCCCE
Confidence 4678999999999999999999999998 79999998654211100 000000 00 000112345567788999
Q ss_pred EEEeccCChh-hhc-ccCHHHHhcCCCCcEEEEcCCCc
Q 017490 253 VVCCLSLNKQ-TAG-IVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 253 V~l~lP~t~~-t~~-li~~~~l~~mk~gailIN~sRg~ 288 (370)
|+.+.|.--. ... .++. ..++++.+++|+.-.+
T Consensus 196 VInaTp~Gm~~~~~~~~~~---~~l~~~~~v~DivY~P 230 (284)
T PRK12549 196 LVHATPTGMAKHPGLPLPA---ELLRPGLWVADIVYFP 230 (284)
T ss_pred EEECCcCCCCCCCCCCCCH---HHcCCCcEEEEeeeCC
Confidence 9999885311 101 1222 2345566666665444
No 198
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.17 E-value=0.00018 Score=65.83 Aligned_cols=44 Identities=30% Similarity=0.459 Sum_probs=37.9
Q ss_pred ccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490 166 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 209 (370)
Q Consensus 166 ~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~ 209 (370)
.|+......|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 10 ~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 10 DIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 355444567999999999999999999999999998 89999976
No 199
>PLN02477 glutamate dehydrogenase
Probab=97.15 E-value=0.015 Score=58.78 Aligned_cols=125 Identities=22% Similarity=0.248 Sum_probs=75.1
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEE-EcCCCcccc-cc--ccccchhhhccccccccccccCCCCCHHHH-
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHS-QV--SCQSSALAVKNGIIDDLVDEKGCHEDIFEF- 246 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~-~dr~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~el- 246 (370)
+.+++|++|.|.|+|++|+.+|+.|...|++|++ .|.+..-.. .- .+....+...++.+..... ....+.+++
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~--a~~i~~~e~l 278 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPG--GDPIDPDDIL 278 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhcccc--ceEecCccce
Confidence 4578999999999999999999999999999994 444311000 00 0000000000110000000 011122333
Q ss_pred HhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490 247 ASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG 306 (370)
Q Consensus 247 l~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g 306 (370)
...|||++-|. ..+.|+++...+++ =.+++-.+.+++ +.+-.+.|++..|..
T Consensus 279 ~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~--t~ea~~~L~~rGI~~ 330 (410)
T PLN02477 279 VEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT--DPEADEILRKKGVVV 330 (410)
T ss_pred eccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC--CHHHHHHHHHCCcEE
Confidence 34899888663 56678888888875 457777888887 334568888888763
No 200
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.13 E-value=0.00078 Score=66.08 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=58.7
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccc-ccccCC---CCCHHHHHhcCC
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGC---HEDIFEFASKAD 251 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~l~ell~~aD 251 (370)
.|++|+|+|+|.+|....+.++++|++|+++|++.++..... ++ ++.... ...++.+-+.+|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~--------------~lGAd~~i~~~~~~~~~~~~~~~d 231 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAK--------------KLGADHVINSSDSDALEAVKEIAD 231 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHH--------------HhCCcEEEEcCCchhhHHhHhhCc
Confidence 488999999999999999999999999999999876521111 11 111111 112233333488
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
+++.++| .... ...++.+|+|..++-++
T Consensus 232 ~ii~tv~-~~~~-----~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 232 AIIDTVG-PATL-----EPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEEECCC-hhhH-----HHHHHHHhcCCEEEEEC
Confidence 8888877 4331 24566677777776553
No 201
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.12 E-value=0.0041 Score=57.54 Aligned_cols=123 Identities=20% Similarity=0.136 Sum_probs=69.7
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEE-EcCCCccccccccc--cchhhhccccccccccccCCCCCHHHHH-h
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA-TKRSWASHSQVSCQ--SSALAVKNGIIDDLVDEKGCHEDIFEFA-S 248 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~-~dr~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~ell-~ 248 (370)
.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+..-..+-.+. ...+....+.+.. ... ....+-++++ .
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~-~~~-~~~~~~~~l~~~ 96 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSAR-VKV-QDYFPGEAILGL 96 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccc-cCc-ccccCcccceec
Confidence 468999999999999999999999999997655 55443000000000 0000000000000 000 0011112332 3
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
+||+++-|.+. +.|+.+....++ =.+++--+.+++-+ .-.+.|++..+.
T Consensus 97 ~~DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 97 DVDIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cccEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 89999888653 377877777776 34566666777654 456777777664
No 202
>PRK06046 alanine dehydrogenase; Validated
Probab=97.12 E-value=0.00072 Score=66.36 Aligned_cols=90 Identities=23% Similarity=0.320 Sum_probs=62.2
Q ss_pred CceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcC
Q 017490 177 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA 250 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a 250 (370)
-++|||||+|.+|+..++.+.. .+. +|.+|||+......-. .+.....+ ...+++++++ +
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~l~-a 194 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFV-------------ERMSSVVGCDVTVAEDIEEACD-C 194 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHH-------------HHHHhhcCceEEEeCCHHHHhh-C
Confidence 4689999999999999988763 455 5788999865421100 00000001 2357888887 9
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
|+|++|+|. +..++..+. +|+|+.+..++.
T Consensus 195 DiVv~aTps---~~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 195 DILVTTTPS---RKPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CEEEEecCC---CCcEecHHH---cCCCCEEEecCC
Confidence 999999875 346777665 589999988873
No 203
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.10 E-value=0.0025 Score=64.92 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=74.3
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEE-cCCCccccc-cccc--cchhhhcc-ccccccccccC-CCCCHHH
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRSWASHSQ-VSCQ--SSALAVKN-GIIDDLVDEKG-CHEDIFE 245 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~-dr~~~~~~~-~~~~--~~~~~~~~-~~~~~~~~~~~-~~~~l~e 245 (370)
+.++.|++|.|.|+|++|+.+|+.|..+|++|+++ |.+..-..+ -.+. ...+...+ +.+.......+ ...+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 35789999999999999999999999999999987 532210000 0000 00000000 01111111101 1123344
Q ss_pred HHh-cCCEEEEeccCChhhhcccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 246 FAS-KADVVVCCLSLNKQTAGIVNKSFLSSMK--KGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 246 ll~-~aDiV~l~lP~t~~t~~li~~~~l~~mk--~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
++. +|||++-|. +.+.|+.+....++ .=.+++-.+.+++ +.+-.+.|.++.|.
T Consensus 307 i~~~d~DVliPaA-----l~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~ 362 (445)
T PRK09414 307 PWSVPCDIALPCA-----TQNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL 362 (445)
T ss_pred ccccCCcEEEecC-----CcCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE
Confidence 443 799998775 34578777666663 2346667777887 44466788888775
No 204
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.09 E-value=0.0025 Score=61.85 Aligned_cols=135 Identities=17% Similarity=0.155 Sum_probs=81.5
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hcccccccc-ccc-cC---CCCCHHHHHh
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDDL-VDE-KG---CHEDIFEFAS 248 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~~-~~~-~~---~~~~l~ell~ 248 (370)
-++|||||.|.||+.+|..+..-|++|..+|+++......... ...+. +..+...+. ... .. ...++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 4789999999999999999988779999999984331110000 00000 000000000 000 00 112332 688
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCC
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 315 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~E 315 (370)
+||+|+=.+|-+.+.+.-+-++.=+..||+++|=. ..+-+.-.++.+++ ..+=+..++=.|.+-
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlAS--NTSsl~it~ia~~~-~rper~iG~HFfNP~ 145 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILAS--NTSSLSITELAEAL-KRPERFIGLHFFNPV 145 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEee--ccCCCCHHHHHHHh-CCchhEEEEeccCCC
Confidence 99999999998888776555555566788988742 23335567777777 444445666666543
No 205
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.07 E-value=0.00062 Score=66.46 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=55.1
Q ss_pred ceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcCC
Q 017490 178 KTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKAD 251 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~aD 251 (370)
+++||||.|..|+.-++.+.. ++. +|.+|+|++.+...-. ..... .+ ...+.++.+++||
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~-------------~~~~~-~~~~v~~~~~~~~av~~aD 194 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFA-------------ARLRD-LGVPVVAVDSAEEAVRGAD 194 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHH-------------HHHHC-CCTCEEEESSHHHHHTTSS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHH-------------Hhhcc-ccccceeccchhhhcccCC
Confidence 589999999999999887754 555 7999999865421100 01111 11 2468999999999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 289 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~ 289 (370)
+|+.+.|.+..+ .+++.+. +|||+.++.++....
T Consensus 195 ii~taT~s~~~~-P~~~~~~---l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 195 IIVTATPSTTPA-PVFDAEW---LKPGTHINAIGSYTP 228 (313)
T ss_dssp EEEE----SSEE-ESB-GGG---S-TT-EEEE-S-SST
T ss_pred EEEEccCCCCCC-ccccHHH---cCCCcEEEEecCCCC
Confidence 999997654322 6787664 689999999987544
No 206
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.06 E-value=0.00063 Score=67.14 Aligned_cols=104 Identities=21% Similarity=0.209 Sum_probs=64.0
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc---cccCCCCCHHHHHhcCCEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV---DEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ell~~aDiV~ 254 (370)
.+|+|||.|.+|..+|..|...| .|..|.+++.... ... ..........+.. .......++++.++.+|+|+
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~-~i~---~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVi 82 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETAD-DIN---DNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVV 82 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHH-HHH---hcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEE
Confidence 57999999999999999999888 6777776543210 000 0000000000000 00012357778889999999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+++| +..++..+. +.-..+++++.+|++.-|=
T Consensus 83 lavp-s~~~~~vl~-~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 83 MGVP-SHGFRGVLT-ELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred EEeC-HHHHHHHHH-HHHhhcCCCCEEEEEEeCC
Confidence 9999 344555443 3344578888899998863
No 207
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.06 E-value=0.00045 Score=56.19 Aligned_cols=88 Identities=23% Similarity=0.317 Sum_probs=56.1
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
.++|++|.|||.|.+|..-++.|...|++|+++.+.... ... . ..+. ...+++.+..+|+|
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~-~~~------------~-i~~~-----~~~~~~~l~~~~lV 64 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEF-SEG------------L-IQLI-----RREFEEDLDGADLV 64 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHH-HHT------------S-CEEE-----ESS-GGGCTTESEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh-hhh------------H-HHHH-----hhhHHHHHhhheEE
Confidence 589999999999999999999999999999999876310 000 0 0111 12334557889999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
+.+.+.. + +++......+.-.+++|++
T Consensus 65 ~~at~d~-~----~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 65 FAATDDP-E----LNEAIYADARARGILVNVV 91 (103)
T ss_dssp EE-SS-H-H----HHHHHHHHHHHTTSEEEET
T ss_pred EecCCCH-H----HHHHHHHHHhhCCEEEEEC
Confidence 8876532 3 3444555555556777775
No 208
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00093 Score=65.71 Aligned_cols=67 Identities=28% Similarity=0.311 Sum_probs=48.0
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEEE
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVVC 255 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~l 255 (370)
++||||||-|..|+.++..++.+|++|++.|+.......... +..+.... ..+.+.++.+.||+|.-
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va------------~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVA------------DRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcc------------cceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999988765211110 11111111 22357788999999876
No 209
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.04 E-value=0.0038 Score=63.51 Aligned_cols=127 Identities=19% Similarity=0.140 Sum_probs=72.4
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccc--cccc-c----hhhhc-cccccccccccC-CCCC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV--SCQS-S----ALAVK-NGIIDDLVDEKG-CHED 242 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~~-~----~~~~~-~~~~~~~~~~~~-~~~~ 242 (370)
+.+|.|++|.|.|+|++|+..|+.|..+|++|+++.........+ .+.. . ++.-. ++.+.+.....+ ...+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 457999999999999999999999999999999844322110000 0000 0 00000 011111111111 1112
Q ss_pred HHHHH-hcCCEEEEeccCChhhhcccCHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 243 IFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMKK-GS-LLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 243 l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~mk~-ga-ilIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
.++++ ..|||++-| .+.+.|+.+...+++. |. +++--+.| ++..++. +.|.+..|.
T Consensus 303 ~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~ 361 (444)
T PRK14031 303 GARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL 361 (444)
T ss_pred CcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE
Confidence 33433 479988765 3677899888888865 44 45555566 5665554 555555554
No 210
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.04 E-value=0.0014 Score=64.80 Aligned_cols=108 Identities=18% Similarity=0.155 Sum_probs=64.9
Q ss_pred eEEEEecCchhHHHHHHhccCC--------CEEEEEcCCCccc-cccccccchhhhccccccc--cccccCCCCCHHHHH
Q 017490 179 TVFILGFGNIGVELAKRLRPFG--------VKIIATKRSWASH-SQVSCQSSALAVKNGIIDD--LVDEKGCHEDIFEFA 247 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G--------~~V~~~dr~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell 247 (370)
+|+|||.|+.|.++|..+...| .+|..|.|...-. ......-+.-+.....+.. +........++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999998777 8999998732100 0000000000000000000 000001225789999
Q ss_pred hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+.||+|++++|. ...+.++ .+.-..++++..+|+++-|=
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGi 119 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGL 119 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCc
Confidence 999999999994 3444443 23334578899999998773
No 211
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.03 E-value=0.0012 Score=60.76 Aligned_cols=94 Identities=26% Similarity=0.283 Sum_probs=63.4
Q ss_pred ceEEEEecCchhHHHHHHhccC--CC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490 178 KTVFILGFGNIGVELAKRLRPF--GV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 252 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~--G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 252 (370)
.+|||||+|.||+.+.+.++.- .+ .|.+||++.++.. ++..... ...++++++++.|+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~-----------------~~~~~~~~~~~s~ide~~~~~Dl 63 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAK-----------------ELEASVGRRCVSDIDELIAEVDL 63 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHH-----------------HHHhhcCCCccccHHHHhhccce
Confidence 3799999999999999998842 35 4889999876521 1111222 23679999999999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYE 293 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~ 293 (370)
|+=|.. .+..+.+ ..+.+|.|-=+|=+|-|.+.|+.
T Consensus 64 vVEaAS-~~Av~e~----~~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 64 VVEAAS-PEAVREY----VPKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred eeeeCC-HHHHHHH----hHHHHhcCCCEEEEechhccChH
Confidence 987754 2233322 23345667667777888888554
No 212
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.01 E-value=0.0023 Score=69.17 Aligned_cols=132 Identities=17% Similarity=0.134 Sum_probs=80.7
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hcccccc-----ccccccCCCCCHHHHHhc
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIID-----DLVDEKGCHEDIFEFASK 249 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~-----~~~~~~~~~~~l~ell~~ 249 (370)
++|+|||.|.||..+|..+...|++|..+|++.......... ...+. ...+... ..........++ +.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 589999999999999999999999999999876542110000 00000 0000000 000000012344 45799
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 313 (370)
||+|+=++|-..+.+.=+-++.=+.++|+++|-.. .+.++..+|...++. +-+..++=.|.
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasn--TS~l~i~~ia~~~~~-p~r~ig~Hff~ 453 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASN--TSTISISLLAKALKR-PENFCGMHFFN 453 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHhhcCC-cccEEEEecCC
Confidence 99999999988887765555666778999887543 344566777777753 33334555443
No 213
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.99 E-value=0.0013 Score=65.62 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=64.6
Q ss_pred ceEEEEecCchhHHHHHHhccCC-------CEEEEEcCCCcccc-ccccccchhhhcccccc--ccccccCCCCCHHHHH
Q 017490 178 KTVFILGFGNIGVELAKRLRPFG-------VKIIATKRSWASHS-QVSCQSSALAVKNGIID--DLVDEKGCHEDIFEFA 247 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G-------~~V~~~dr~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ell 247 (370)
++|+|||.|..|.++|..+...| .+|..|.|+..-.. ...+.-+.-+....... .+.+......++++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 58999999999999999998665 78988877653100 00000000000000000 0111111235788999
Q ss_pred hcCCEEEEeccCChhhhcccCHHHHh--cCCCCcEEEEcCCCcc
Q 017490 248 SKADVVVCCLSLNKQTAGIVNKSFLS--SMKKGSLLVNIARGGL 289 (370)
Q Consensus 248 ~~aDiV~l~lP~t~~t~~li~~~~l~--~mk~gailIN~sRg~~ 289 (370)
+.||+|++++|. ...+.++. +.-. .+++++++|+++-|=-
T Consensus 92 ~~aDiIvlAVPs-q~l~~vl~-~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 92 EDADLLIFVIPH-QFLESVLS-QIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred hcCCEEEEEcCh-HHHHHHHH-HhccccccCCCCEEEEEeCCcc
Confidence 999999999994 34444432 2222 4667889999887643
No 214
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.96 E-value=0.0014 Score=64.06 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=64.3
Q ss_pred CceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 177 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
-++++|+|.|..++.-++.+.. +.. +|.+|+|++.+...-.+. + .+.........+.++.++.||+|+
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~---~-------~~~~~~v~~~~~~~~av~~ADIV~ 197 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQY---A-------QALGFAVNTTLDAAEVAHAANLIV 197 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHH---H-------HhcCCcEEEECCHHHHhcCCCEEE
Confidence 5699999999999998887653 333 799999987653110000 0 000000012367899999999999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
.+.| ++..+++.+. +|||+.++.+|.
T Consensus 198 taT~---s~~P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 198 TTTP---SREPLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred EecC---CCCceeCHHH---cCCCcEEEecCC
Confidence 9965 4557887765 589999999973
No 215
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.96 E-value=0.00092 Score=65.96 Aligned_cols=105 Identities=22% Similarity=0.268 Sum_probs=62.5
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cc--------------hhhhcc
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SS--------------ALAVKN 227 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~--------------~~~~~~ 227 (370)
|+......|++++|.|||+|.+|..+|+.|...|. ++..+|+..-...--..+ +. .+...+
T Consensus 14 ~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in 93 (338)
T PRK12475 14 IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN 93 (338)
T ss_pred cCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence 44333467999999999999999999999999998 788899864210000000 00 000000
Q ss_pred cccc-ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHH
Q 017490 228 GIID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFL 272 (370)
Q Consensus 228 ~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l 272 (370)
..+. +.........+++++++++|+|+.++ .+.+++.+++.-..
T Consensus 94 p~v~i~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~ 138 (338)
T PRK12475 94 SEVEIVPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQ 138 (338)
T ss_pred CCcEEEEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHH
Confidence 0000 00000012245678889999998887 46777777775443
No 216
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.96 E-value=0.0011 Score=65.09 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=61.7
Q ss_pred cCceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
..++++|||.|.+|+..+..+.. .+. +|.+|+|+..+...-... + . ...........++++++.+||+|
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~---~---~---~~~g~~v~~~~d~~~al~~aDiV 201 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAAD---L---R---AELGIPVTVARDVHEAVAGADII 201 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH---H---h---hccCceEEEeCCHHHHHccCCEE
Confidence 35789999999999998887764 554 799999986542110000 0 0 00000011246789999999999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
+++.|.. ..++..+. +++|+.+..++
T Consensus 202 i~aT~s~---~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 202 VTTTPSE---EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred EEeeCCC---CcEecHHH---cCCCceEEeeC
Confidence 9997753 45776654 57887776643
No 217
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.95 E-value=0.0018 Score=63.19 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=62.2
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccccc-chhhhccccccccccccCCCCCHHHHH-hcCCEEEEe
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS-SALAVKNGIIDDLVDEKGCHEDIFEFA-SKADVVVCC 256 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV~l~ 256 (370)
+|+|||.|.+|..+|..|...|.+|..|+|+..... ..... ....+..+ ...........++++.+ ..+|+|+++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~-~i~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~Dliiia 78 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFE-SINTKRKNLKYLPT--CHLPDNISVKSAIDEVLSDNATCIILA 78 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHH-HHHHcCCCcccCCC--CcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence 699999999999999999999999999998643210 00000 00000000 00000000124666666 589999999
Q ss_pred ccCChhhhcccCHHHHh-cCCCCcEEEEcCCCc
Q 017490 257 LSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGG 288 (370)
Q Consensus 257 lP~t~~t~~li~~~~l~-~mk~gailIN~sRg~ 288 (370)
+|. .+++.++. +... .+++++.+|....|-
T Consensus 79 vks-~~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 79 VPT-QQLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred eCH-HHHHHHHH-HHHHhcCCCCCEEEEEEcCe
Confidence 994 34544443 2233 567777777776664
No 218
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.94 E-value=0.0032 Score=52.43 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=54.6
Q ss_pred eEEEEe-cCchhHHHHHHhccC-CCEEEEE-cCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490 179 TVFILG-FGNIGVELAKRLRPF-GVKIIAT-KRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 179 tvGIiG-lG~IG~~vA~~l~~~-G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
++||+| .|.+|+.+++.+... ++++.++ ++........... ...............+++ ..++|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~DvV~~ 71 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEA-------GPHLKGEVVLELEPEDFE--ELAVDIVFL 71 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHH-------CcccccccccccccCChh--hcCCCEEEE
Confidence 589999 599999999988874 8887776 4332111000000 000000000000112232 258999999
Q ss_pred eccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
|+|.... ...+. .....+++|.++|++|.
T Consensus 72 ~~~~~~~-~~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 72 ALPHGVS-KEIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred cCCcHHH-HHHHH-HHHhhhcCCCEEEECCc
Confidence 9996533 33222 23455799999999984
No 219
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.92 E-value=0.002 Score=63.18 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=67.2
Q ss_pred CceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 177 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
-+++||||.|..++.-++.++. ++. +|.+|+|++.....-... +. ..+........+.+++++.||+|+
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~---l~------~~~~~~v~a~~s~~~av~~aDiIv 200 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAAR---LR------KRGGEAVGAADSAEEAVEGADIVV 200 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHH---HH------hhcCccceeccCHHHHhhcCCEEE
Confidence 4589999999999999998864 555 799999987653211100 00 011111224578899999999999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
.+.|.++ .++..+. +|||+.+..++.
T Consensus 201 t~T~s~~---Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 201 TATPSTE---PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred EecCCCC---CeecHhh---cCCCcEEEecCC
Confidence 9977554 7787766 569999999984
No 220
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.92 E-value=0.0028 Score=68.54 Aligned_cols=132 Identities=14% Similarity=0.017 Sum_probs=82.3
Q ss_pred ceEEEEecCchhHHHHHHhc-cCCCEEEEEcCCCccccccccc-cchhh--hccccccc-----cccccCCCCCHHHHHh
Q 017490 178 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD-----LVDEKGCHEDIFEFAS 248 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~-----~~~~~~~~~~l~ell~ 248 (370)
++|+|||.|.||..+|..+. ..|++|..||++.......... ...+. ...+.... .........++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 7899999999875431110000 00000 00000000 00000012345 4678
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 313 (370)
.||+|+=++|-+.+.+.-+-++.=+.++|+++|... .+.+....|.+.+.. +-+.+++--|.
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasn--TS~l~i~~la~~~~~-p~r~ig~Hff~ 450 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASN--TSSLPIGQIAAAAAR-PEQVIGLHYFS 450 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEEC--CCCCCHHHHHHhcCc-ccceEEEecCC
Confidence 999999999988887766656666778999988644 444667777777753 33445666664
No 221
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.92 E-value=0.0023 Score=69.42 Aligned_cols=132 Identities=19% Similarity=0.127 Sum_probs=83.2
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccc-cchhh--hcccccc-----ccccccCCCCCHHHHHhc
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIID-----DLVDEKGCHEDIFEFASK 249 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~-----~~~~~~~~~~~l~ell~~ 249 (370)
++|+|||.|.||..+|..+...|++|+.+|+++......... ...+. ...+... ..........++ +.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence 589999999999999999998899999999886542110000 00000 0000000 000001112345 35789
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 313 (370)
||+|+=++|-+.+.+.-+-++.=+.++++++|.. ..+.++..+|.+.+.. .-+..++-.|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilas--NTSsl~i~~la~~~~~-p~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIAS--NTSALPIKDIAAVSSR-PEKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEE--cCCCCCHHHHHhhcCC-ccceEEEeccC
Confidence 9999999998888777666666677899988753 3344666777777754 33446777665
No 222
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.90 E-value=0.0019 Score=63.16 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=65.0
Q ss_pred ceEEEEecCchhHHHHHHhccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
.+|||||+|+||+.+++.+... ++++.+ +|++..... ..... .....+.++++.+.|+|++
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~----------------~~~~~-v~~~~d~~e~l~~iDVViI 66 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETL----------------DTETP-VYAVADDEKHLDDVDVLIL 66 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHH----------------hhcCC-ccccCCHHHhccCCCEEEE
Confidence 5899999999999999988754 889876 687642100 00011 1123467777789999999
Q ss_pred eccCChhhhcccCHHHHhcCCCCcEEEEcCCCc--ccCHHH-HHHHHHh-CCce
Q 017490 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG--LLDYEA-IAHYLEC-GHLG 305 (370)
Q Consensus 256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~--~vd~~a-L~~aL~~-g~i~ 305 (370)
|.|.... -......++.|.-+|++.--. +-+..+ |-++-++ |++.
T Consensus 67 ctPs~th-----~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 67 CMGSATD-----IPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred cCCCccC-----HHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 9885422 123444567777788875321 123333 4444443 5554
No 223
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=96.90 E-value=0.0032 Score=68.01 Aligned_cols=132 Identities=15% Similarity=0.033 Sum_probs=80.7
Q ss_pred ceEEEEecCchhHHHHHHhc-cCCCEEEEEcCCCccccccccc-cchhh--hccccccc-----cccccCCCCCHHHHHh
Q 017490 178 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQ-SSALA--VKNGIIDD-----LVDEKGCHEDIFEFAS 248 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~-~~~~~--~~~~~~~~-----~~~~~~~~~~l~ell~ 248 (370)
++|+|||.|.||..+|..+. ..|++|..||+++......... ...+. ...+.+.. .........++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999887 5799999999886431110000 00000 00000000 00000012345 4679
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 313 (370)
.||+|+=++|...+.+.-+-++.=+.++++++|... .+.+....|.+.++. +-+.+++--|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasn--TS~l~i~~la~~~~~-p~r~~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASN--TSSLPIGQIAAAASR-PENVIGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeC--CCCCCHHHHHHhcCC-cccEEEEecCC
Confidence 999999999988887776656666778898887533 333556677777743 33445666664
No 224
>PRK06444 prephenate dehydrogenase; Provisional
Probab=96.84 E-value=0.0034 Score=57.27 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=45.9
Q ss_pred eEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490 179 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 179 tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 257 (370)
+++|||- |.+|+.+++.++..|+.|.. ++||+|++|+
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~------------------------------------------~~~DlVilav 39 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVYI------------------------------------------KKADHAFLSV 39 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEEE------------------------------------------CCCCEEEEeC
Confidence 7999998 99999999999999998752 2589999999
Q ss_pred cCChhhhcccCHHHHhcCCCCcEEEEcCCCcc
Q 017490 258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 289 (370)
Q Consensus 258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~ 289 (370)
|.. .+..++ +.+. .+++|++.-.-
T Consensus 40 Pv~-~~~~~i-----~~~~--~~v~Dv~SvK~ 63 (197)
T PRK06444 40 PID-AALNYI-----ESYD--NNFVEISSVKW 63 (197)
T ss_pred CHH-HHHHHH-----HHhC--CeEEeccccCH
Confidence 954 333333 3333 37889976443
No 225
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.84 E-value=0.0017 Score=59.59 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=36.3
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
..+++|++|.|||.|.+|..-++.|...|++|.++++...
T Consensus 4 ~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 4 FANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred EEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 4568999999999999999999999999999999998654
No 226
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.82 E-value=0.0026 Score=59.94 Aligned_cols=122 Identities=25% Similarity=0.313 Sum_probs=72.0
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEE--------cCCCccccccccccchhhhcccc-ccccccc-c--CCC
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT--------KRSWASHSQVSCQSSALAVKNGI-IDDLVDE-K--GCH 240 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~--------dr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~--~~~ 240 (370)
..++|+++.|-|+|++|+.+|+.|...|++|+++ |+..-... ....+....+. +...... . ..+
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~----~l~~~~~~~~~~v~~~~~~~~~~~~~ 103 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVE----ELLRIKEERGSRVDDYPLESPDGAEY 103 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHH----HHHHHHHHHSSHSTTGTHTCSSTSEE
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHH----HHHHHHHHhCCcccccccccccceeE
Confidence 3699999999999999999999999999998876 43321100 00000000000 0000000 0 000
Q ss_pred CCHH-HHH-hcCCEEEEeccCChhhhcccCHHHHh-cCCCCcEEEEcC-CCcccCHHHHHHHHHhCCce
Q 017490 241 EDIF-EFA-SKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNIA-RGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 241 ~~l~-ell-~~aDiV~l~lP~t~~t~~li~~~~l~-~mk~gailIN~s-Rg~~vd~~aL~~aL~~g~i~ 305 (370)
-+-+ +++ ..|||++.|- ..+.|+.+... .+++|+-+|--+ .+++ ..++.. .|++..|.
T Consensus 104 ~~~~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 104 IPNDDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGIL 165 (244)
T ss_dssp ECHHCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-E
T ss_pred eccccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCE
Confidence 1222 555 4899999882 45678888888 787776555554 5554 555555 88888876
No 227
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.81 E-value=0.002 Score=64.55 Aligned_cols=100 Identities=22% Similarity=0.268 Sum_probs=65.7
Q ss_pred CceEEEEecCchhHHHHHHhcc-CC-C-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 177 GKTVFILGFGNIGVELAKRLRP-FG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~-~G-~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
-+++||||.|..++.-++.+.. +. . +|.+|+|++.+...-... +. . ..... .......+.++++++||+|
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~---~~--~-~~~~~-~~v~~~~s~~eav~~ADIV 227 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATW---VA--E-TYPQI-TNVEVVDSIEEVVRGSDIV 227 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHH---HH--H-hcCCC-ceEEEeCCHHHHHcCCCEE
Confidence 4689999999999999988765 42 3 899999987652110000 00 0 00000 0011236899999999999
Q ss_pred EEeccCCh---hhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 254 VCCLSLNK---QTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 254 ~l~lP~t~---~t~~li~~~~l~~mk~gailIN~sR 286 (370)
+.|.+.+. ++..++..+. +|||+.++.++.
T Consensus 228 vtaT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~ 260 (379)
T PRK06199 228 TYCNSGETGDPSTYPYVKREW---VKPGAFLLMPAA 260 (379)
T ss_pred EEccCCCCCCCCcCcEecHHH---cCCCcEEecCCc
Confidence 99987543 3457787665 579998887765
No 228
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.81 E-value=0.0024 Score=62.16 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=74.7
Q ss_pred ceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l 255 (370)
++|+|||.|.+|..+|..+...|. +|+.+|.......... .++..+. ...... ......+.++ +++||+|++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a---~d~~~~~--~~~~~~~~i~~t~d~~~-~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKA---LDMYEAS--PVGGFDTKVTGTNNYAD-TANSDIVVI 75 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHH---Hhhhhhh--hccCCCcEEEecCCHHH-hCCCCEEEE
Confidence 479999999999999999887665 8999998543211000 0010000 000000 1112246666 789999999
Q ss_pred eccCChhhhc------------ccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE--Ee
Q 017490 256 CLSLNKQTAG------------IVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG--ID 310 (370)
Q Consensus 256 ~lP~t~~t~~------------li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~--lD 310 (370)
+.+.. ...+ ++. .+.+....+++++|+++..-=+-...+.+. +...++.|.+ ||
T Consensus 76 tag~p-~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 76 TAGLP-RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred cCCCC-CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 98832 2111 111 122444467899999987655555555555 5555677765 67
No 229
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.80 E-value=0.00096 Score=54.95 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=46.4
Q ss_pred eEEEEecCchhHHHHHHhccC--CCEEE-EEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh--cCC
Q 017490 179 TVFILGFGNIGVELAKRLRPF--GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KAD 251 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~--G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aD 251 (370)
++||||+|.+|+...+.+... +++|. ++|+++.+.. ......+ .+.+++++++ +.|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~-----------------~~~~~~~~~~~~~~~~ll~~~~~D 64 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAE-----------------AFAEKYGIPVYTDLEELLADEDVD 64 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHH-----------------HHHHHTTSEEESSHHHHHHHTTES
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHH-----------------HHHHHhcccchhHHHHHHHhhcCC
Confidence 699999999999998877655 56765 6787654321 1111122 4578999998 789
Q ss_pred EEEEeccCC
Q 017490 252 VVVCCLSLN 260 (370)
Q Consensus 252 iV~l~lP~t 260 (370)
+|+++.|..
T Consensus 65 ~V~I~tp~~ 73 (120)
T PF01408_consen 65 AVIIATPPS 73 (120)
T ss_dssp EEEEESSGG
T ss_pred EEEEecCCc
Confidence 999999853
No 230
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.80 E-value=0.0041 Score=51.75 Aligned_cols=101 Identities=14% Similarity=0.255 Sum_probs=65.9
Q ss_pred ceEEEEe----cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 178 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 178 ~tvGIiG----lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
|+++||| -|..|..+.+.|+..|++|+.+++..... .... .+.+++|.-...|++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i------------------~G~~---~y~sl~e~p~~iDla 59 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI------------------LGIK---CYPSLAEIPEPIDLA 59 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE------------------TTEE----BSSGGGCSST-SEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE------------------CcEE---eeccccCCCCCCCEE
Confidence 6899999 78999999999999999999998765331 1111 356777744789999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGG 306 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g 306 (370)
++++|. +.+..+++ .+..+..+.+++..+ ..++++.+.+++..+.-
T Consensus 60 vv~~~~-~~~~~~v~--~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 60 VVCVPP-DKVPEIVD--EAAALGVKAVWLQPG----AESEELIEAAREAGIRV 105 (116)
T ss_dssp EE-S-H-HHHHHHHH--HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EE
T ss_pred EEEcCH-HHHHHHHH--HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEE
Confidence 999994 34444443 233345678888887 67888999999887763
No 231
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.78 E-value=0.0034 Score=59.54 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=64.8
Q ss_pred ceEEEEecCchhHHHHHHhccC---CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHH-HhcCCE
Q 017490 178 KTVFILGFGNIGVELAKRLRPF---GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKADV 252 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~---G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDi 252 (370)
.+|||||+|.||+.+++.+..- ++++. ++++..... ..+........+++++ ....|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~-----------------~~~~~~~~~~~~l~~ll~~~~Dl 65 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP-----------------PALAGRVALLDGLPGLLAWRPDL 65 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH-----------------HHhhccCcccCCHHHHhhcCCCE
Confidence 5899999999999999988652 35544 455543221 0111111134689997 578999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHhC
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD---YEAIAHYLECG 302 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd---~~aL~~aL~~g 302 (370)
|+=|.... ..+. ... +-++.|.-++=.|-|.+-| ++.|.++.+++
T Consensus 66 VVE~A~~~-av~e-~~~---~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~ 113 (267)
T PRK13301 66 VVEAAGQQ-AIAE-HAE---GCLTAGLDMIICSAGALADDALRARLIAAAEAG 113 (267)
T ss_pred EEECCCHH-HHHH-HHH---HHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence 98886532 2221 122 2355677788888888887 55566666654
No 232
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.77 E-value=0.0024 Score=62.07 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=63.6
Q ss_pred CceEEEEecCchhHHHHHHhcc-CCC-EEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhcC
Q 017490 177 GKTVFILGFGNIGVELAKRLRP-FGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASKA 250 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~-~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~a 250 (370)
-+++||||.|..|+.-++.+.. +.. +|.+|+|++.+... |. .+.....+ ...+.++.+.+|
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~-------f~------~~~~~~~~~~v~~~~~~~eav~~a 183 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARA-------FA------ERFSKEFGVDIRPVDNAEAALRDA 183 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHH-------HH------HHHHHhcCCcEEEeCCHHHHHhcC
Confidence 5799999999999988887764 444 79999998765211 00 01111111 236899999999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
|+|+.+.| ++..+++.+. +|||+.++-++.
T Consensus 184 DIV~taT~---s~~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 184 DTITSITN---SDTPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred CEEEEecC---CCCcEecHHH---cCCCceEEecCC
Confidence 99999966 4557887765 578988777664
No 233
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.76 E-value=0.0025 Score=61.65 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=34.4
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
.|+.+||+|+|.+|.--.+.++++|++|+++|+..++
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~k 217 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKK 217 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchh
Confidence 7999999999999999999999999999999988643
No 234
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.76 E-value=0.032 Score=56.89 Aligned_cols=174 Identities=16% Similarity=0.074 Sum_probs=91.9
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEE--------EcCCCccccccccccchhhhcccccc-cccccc-C-CC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA--------TKRSWASHSQVSCQSSALAVKNGIID-DLVDEK-G-CH 240 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~--------~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~ 240 (370)
+.++.|+||.|=|+|++|+..|+.|..+|++|++ ||+..-.... ......+.-.++.+. .....+ + ..
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~-l~~l~~~k~~~~~~~~~~~~~~~ga~~ 301 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK-IDYMLELRASGNDIVAPYAEKFPGSTF 301 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH-HHHHHHHHHhcCccHHHHHhcCCCCEE
Confidence 4578999999999999999999999999999999 6654322100 000000000000000 000011 1 11
Q ss_pred CCHHHHH-hcCCEEEEeccCChhhhcccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCC
Q 017490 241 EDIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSMK--KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF 317 (370)
Q Consensus 241 ~~l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~mk--~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl 317 (370)
.+-++++ ..|||++-| .+.+.|+.+....+. .=.+++--+.+ +++.+ -.+.|.+..|..+ =|+..+-==
T Consensus 302 i~~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~e-A~~iL~~rGI~~v-PD~~aNAGG 373 (445)
T PRK14030 302 FAGKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAE-AIDKFIAAKQLFA-PGKAVNAGG 373 (445)
T ss_pred cCCccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHH-HHHHHHHCCCEEe-CcceecCCC
Confidence 1223333 379988766 377789888777772 23456666677 55554 4477787777632 233221100
Q ss_pred CCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHH
Q 017490 318 DPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL 357 (370)
Q Consensus 318 ~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~ 357 (370)
-.-+-+=-.-| .-|..|..++..+++.+...+...+.
T Consensus 374 Vivs~~E~~qn---~~~~~w~~eeV~~~L~~~m~~~~~~v 410 (445)
T PRK14030 374 VATSGLEMSQN---AMHLSWSAEEVDEKLHQIMSGIHEQC 410 (445)
T ss_pred eeeehhhhhcc---ccccCcCHHHHHHHHHHHHHHHHHHH
Confidence 00000000112 23455556666666666655555544
No 235
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.76 E-value=0.00085 Score=62.40 Aligned_cols=116 Identities=24% Similarity=0.276 Sum_probs=67.4
Q ss_pred ccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cchh------------hhccc
Q 017490 166 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SSAL------------AVKNG 228 (370)
Q Consensus 166 ~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~~~------------~~~~~ 228 (370)
.|+......|..++|.|+|+|.+|..+|+.|...|. ++..+|...-...--..+ ..+. ...+.
T Consensus 10 ~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (228)
T cd00757 10 EIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINP 89 (228)
T ss_pred hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCC
Confidence 355444467899999999999999999999999998 788887653221000000 0000 00000
Q ss_pred cc-cccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 229 II-DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 229 ~~-~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
.. .+.........++++++.++|+|+.|+. +.+++.++++...+ .+.-+|..+
T Consensus 90 ~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g 143 (228)
T cd00757 90 DVEIEAYNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA 143 (228)
T ss_pred CCEEEEecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence 00 0000000012345678889999988876 56777777755443 345567665
No 236
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.72 E-value=0.0024 Score=58.37 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=35.6
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
..+++|++|.|||.|.+|...++.|...|++|+++++..
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 457999999999999999999999999999999998754
No 237
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.66 E-value=0.0014 Score=63.00 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=50.4
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
.++|+++.|||.|.+|++++..|...|+ +|.+++|+..+...-... +. . ...........++.+.+.++|+
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~---~~--~---~~~~~~~~~~~~~~~~~~~~Di 193 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDL---GV--Q---VGVITRLEGDSGGLAIEKAAEV 193 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH---hh--h---cCcceeccchhhhhhcccCCCE
Confidence 3678999999999999999999999998 699999986542110000 00 0 0000000001233455678999
Q ss_pred EEEeccCC
Q 017490 253 VVCCLSLN 260 (370)
Q Consensus 253 V~l~lP~t 260 (370)
|+.++|..
T Consensus 194 VInaTp~g 201 (282)
T TIGR01809 194 LVSTVPAD 201 (282)
T ss_pred EEECCCCC
Confidence 99998864
No 238
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.64 E-value=0.0082 Score=56.77 Aligned_cols=105 Identities=22% Similarity=0.166 Sum_probs=65.3
Q ss_pred CcccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHH
Q 017490 171 TGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFA 247 (370)
Q Consensus 171 ~~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell 247 (370)
.|.+|+..||+|+|+ |.||..+|+.+.+.+++....-|......... +. .+..+.+ ...+++..+
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~-----l~-------~l~e~~~~~~i~s~d~~~ 228 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQR-----LT-------LLQEELGRGKIMSLDYAL 228 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhh-----hh-------hcccccCCCeeeeccccc
Confidence 478999999999997 99999999999998887655544322111000 00 1111122 223555555
Q ss_pred hcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH
Q 017490 248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY 292 (370)
Q Consensus 248 ~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~ 292 (370)
.+.|+++-.. +..+-..|+... +|||+++++-++..=+|+
T Consensus 229 ~~e~i~v~vA--s~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 229 PQEDILVWVA--SMPKGVEIFPQH---LKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred cccceEEEEe--ecCCCceechhh---ccCCeEEEcCCcCccccc
Confidence 5555544332 223445677654 699999999998875554
No 239
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.61 E-value=0.0075 Score=58.15 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=33.9
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCC
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 210 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~ 210 (370)
.+.|+++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999999999999999999999996 99999975
No 240
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.60 E-value=0.0076 Score=56.86 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=57.8
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 257 (370)
.++-|+|.|.+++++|+.++.+|++|.++|.++.-. .. ..+..++.+....
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~---------------------~~--------~~~~~~~~~~~~~ 151 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF---------------------PE--------DLPDGVATLVTDE 151 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc---------------------cc--------cCCCCceEEecCC
Confidence 378999999999999999999999999999763310 00 0012233222211
Q ss_pred cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
| .+.+..+.+.+.+|=+.++.-.|.+.|..+|.+....
T Consensus 152 ~----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~ 189 (246)
T TIGR02964 152 P----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGDFA 189 (246)
T ss_pred H----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCCCc
Confidence 1 1222234566777777788888888888888544443
No 241
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.59 E-value=0.0048 Score=52.92 Aligned_cols=86 Identities=21% Similarity=0.313 Sum_probs=50.5
Q ss_pred EEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccC
Q 017490 180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 259 (370)
Q Consensus 180 vGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~ 259 (370)
+-|+|.|.+|+++++.++.+|++|.++|+++.. ++.++-+ .+.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~----------------------------------~~~~~~~-~~~~~ 45 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER----------------------------------FPEADEV-ICIPP 45 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-----------------------------------TTSSEE-ECSHH
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc----------------------------------cCCCCcc-EecCh
Confidence 469999999999999999999999999976322 1123332 22221
Q ss_pred ChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEE
Q 017490 260 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI 309 (370)
Q Consensus 260 t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~l 309 (370)
++.. +.+ .+.+++.+| +.++.-.|.+.|.++|+. ...+.|+
T Consensus 46 -~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136)
T PF13478_consen 46 -DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136)
T ss_dssp -HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred -HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence 1111 111 355666666 788888899888888887 4544443
No 242
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.56 E-value=0.0071 Score=59.21 Aligned_cols=130 Identities=12% Similarity=0.047 Sum_probs=74.2
Q ss_pred ccCceEEEEecCchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADV 252 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDi 252 (370)
...++|+|||.|.||..+|..+...| .+|..+|++....... .. ++..... ..... ......+.+ .++.||+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~-~l--Dl~~~~~--~~~~~~~i~~~~d~~-~l~~ADi 76 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGK-AL--DLKHFST--LVGSNINILGTNNYE-DIKDSDV 76 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhH-HH--HHhhhcc--ccCCCeEEEeCCCHH-HhCCCCE
Confidence 34679999999999999999988777 6899999875432110 00 0100000 00000 000124565 7799999
Q ss_pred EEEec--cCChh-hh--------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCceEEE--Ee
Q 017490 253 VVCCL--SLNKQ-TA--------GIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE--CGHLGGLG--ID 310 (370)
Q Consensus 253 V~l~l--P~t~~-t~--------~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~--~g~i~ga~--lD 310 (370)
|+++. |..+. ++ .++- .+.+....|.+++|+++...-+-...+.+.-. ..++.|.+ ||
T Consensus 77 VVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 77 VVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 99998 44331 11 1110 12344457889999997655444444444432 34566555 55
No 243
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.53 E-value=0.0044 Score=61.31 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=62.2
Q ss_pred CceEEEEecCchhHHHHHHhc-cCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 177 GKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~-~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
-++++|||.|..++.-++.+. -+.. +|.+|+|++.+...-... + .....+.....+.++.+++||+|+
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~---~-------~~~~~~v~~~~~~~~av~~ADIIv 198 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARN---L-------AGPGLRIVACRSVAEAVEGADIIT 198 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHH---H-------HhcCCcEEEeCCHHHHHhcCCEEE
Confidence 468999999999988877654 3444 799999987652110000 0 000000112468999999999999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
.+.|.+ +...++..+. +|||+.+.-++.
T Consensus 199 taT~S~-~~~Pvl~~~~---lkpG~hV~aIGs 226 (346)
T PRK07589 199 TVTADK-TNATILTDDM---VEPGMHINAVGG 226 (346)
T ss_pred EecCCC-CCCceecHHH---cCCCcEEEecCC
Confidence 998632 2235677654 599998887663
No 244
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.52 E-value=0.0034 Score=59.19 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=65.7
Q ss_pred ccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cch------------hhhccc
Q 017490 166 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SSA------------LAVKNG 228 (370)
Q Consensus 166 ~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~~------------~~~~~~ 228 (370)
.|+......|+.++|+|||+|.+|..+|+.|...|. ++..+|...-...--..+ +.+ +...+.
T Consensus 21 ~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp 100 (245)
T PRK05690 21 GFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP 100 (245)
T ss_pred hcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC
Confidence 455444467999999999999999999999998887 788888653221000000 000 000000
Q ss_pred ccc-ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 229 IID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 229 ~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
.+. +.........+++++++++|+|+.|+- +.+++..++....+.. .-+|..+
T Consensus 101 ~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~---ip~v~~~ 154 (245)
T PRK05690 101 HIAIETINARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAK---KPLVSGA 154 (245)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhC---CEEEEee
Confidence 000 000000011234567889999888874 6677777776554443 3356543
No 245
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.49 E-value=0.0055 Score=61.28 Aligned_cols=121 Identities=22% Similarity=0.259 Sum_probs=74.0
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhh-----ccccccccccccC-CCCCHHHH
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAV-----KNGIIDDLVDEKG-CHEDIFEF 246 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~l~el 246 (370)
.+++|+||.|=|+|++|+..|+.|...|.+|++++.+.... ...+ .+.+ ..+.........+ .+-+-+++
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i-~~~~---Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~ 278 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGI-YDED---GLDVEALLELKERRGSVAEYAGAEYITNEEL 278 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCce-ecCC---CCCHHHHHHHhhhhhhHHhhcCceEcccccc
Confidence 44899999999999999999999998899999988765410 0000 0000 0000000111111 12223555
Q ss_pred Hh-cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 247 AS-KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 247 l~-~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
+. .|||++-| .+.+.|+.+...++|-. +++--+.|++- .+|- +.|.+..|-
T Consensus 279 ~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~-~i~~erGIl 330 (411)
T COG0334 279 LEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEAD-EILLERGIL 330 (411)
T ss_pred ccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHH-HHHHHCCCE
Confidence 54 79988655 47778988888888766 78888888864 3333 333344443
No 246
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.44 E-value=0.0032 Score=62.21 Aligned_cols=44 Identities=32% Similarity=0.495 Sum_probs=37.2
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
|+......|..++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 14 ~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 14 IGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 44333467899999999999999999999999998 899999753
No 247
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.41 E-value=0.0047 Score=58.61 Aligned_cols=127 Identities=18% Similarity=0.203 Sum_probs=74.5
Q ss_pred EEEEec-CchhHHHHHHhccCC----CEEEEEcCCCccccccccccchhhhcccccccc-ccccCCCCCHHHHHhcCCEE
Q 017490 180 VFILGF-GNIGVELAKRLRPFG----VKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-VDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 180 vGIiGl-G~IG~~vA~~l~~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiV 253 (370)
|+|||. |.+|..+|..+...| .+|..||.+.............+. ... ........++++.+++||+|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~------~~~~~~~i~~~~d~~~~~~~aDiV 74 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAV------EPLADIKVSITDDPYEAFKDADVV 74 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhh------hhccCcEEEECCchHHHhCCCCEE
Confidence 589999 999999999988777 689999987644211110000000 000 00001235678889999999
Q ss_pred EEeccC--Ch-hhh--------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE-EecC
Q 017490 254 VCCLSL--NK-QTA--------GIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG-IDVA 312 (370)
Q Consensus 254 ~l~lP~--t~-~t~--------~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~-lDV~ 312 (370)
+++.-. .+ .++ .++. .+.+.+..|.+++||.+..-=+-...+.+. +...++.|.+ +|..
T Consensus 75 v~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~ 149 (263)
T cd00650 75 IITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI 149 (263)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence 996421 11 011 1111 123445568999999964333334445555 4567788888 8875
No 248
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.38 E-value=0.024 Score=57.26 Aligned_cols=89 Identities=25% Similarity=0.319 Sum_probs=62.5
Q ss_pred cccCceEEEEec----------CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCH
Q 017490 174 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI 243 (370)
Q Consensus 174 ~l~g~tvGIiGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (370)
.+.|++|+|+|+ ..-...+++.|...|.+|.+||+...... ........++
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-------------------~~~~~~~~~~ 370 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-------------------VKGLPLIDDL 370 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-------------------hhhcccCCCH
Confidence 589999999998 44677899999999999999998743310 0011123678
Q ss_pred HHHHhcCCEEEEeccCChhhhcccCHHHHhc-CCCCcEEEEc
Q 017490 244 FEFASKADVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNI 284 (370)
Q Consensus 244 ~ell~~aDiV~l~lP~t~~t~~li~~~~l~~-mk~gailIN~ 284 (370)
++.++.+|+|+++.+.. +.+. ++-+.++. |+ ..+++|+
T Consensus 371 ~~~~~~ad~~v~~t~~~-~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 371 EEALKGADALVILTDHD-EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHHHhCCCEEEEecCCH-HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 89999999999998743 3333 34444443 54 4578775
No 249
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.31 E-value=0.0069 Score=53.18 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=36.3
Q ss_pred CCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490 170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 170 ~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
|...+|+|++|.|||.|.+|...++.|...|++|.++++..
T Consensus 6 P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 6 PLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence 34568999999999999999999999999999999997543
No 250
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.23 E-value=0.062 Score=54.87 Aligned_cols=127 Identities=19% Similarity=0.174 Sum_probs=70.7
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEE-EEcCCCcccc-ccccc-----cchhhhcc-cccccccccc-C-CCC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKII-ATKRSWASHS-QVSCQ-----SSALAVKN-GIIDDLVDEK-G-CHE 241 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~-~~dr~~~~~~-~~~~~-----~~~~~~~~-~~~~~~~~~~-~-~~~ 241 (370)
+.++.|+||.|=|+|++|+..|+.|..+|++|+ +.|.+..-.. .-.+. ..++.... +.+.+..... + .+.
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 467999999999999999999999999999999 4444310000 00000 00000000 0001111000 0 111
Q ss_pred CHHHHH-hcCCEEEEeccCChhhhcccCHHHHhcC-CCCcEEEEc-CCCcccCHHHHHHHHHhCCce
Q 017490 242 DIFEFA-SKADVVVCCLSLNKQTAGIVNKSFLSSM-KKGSLLVNI-ARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 242 ~l~ell-~~aDiV~l~lP~t~~t~~li~~~~l~~m-k~gailIN~-sRg~~vd~~aL~~aL~~g~i~ 305 (370)
+-++++ ..|||.+-| .+.+.|+.+..+.+ +.++.+|-- +.+++ .. +-.+.|++..|.
T Consensus 312 ~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~-eA~~~L~~~GI~ 371 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPT-TI-EATHLFKKNGVI 371 (454)
T ss_pred CCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCC-CH-HHHHHHHHCCcE
Confidence 122322 379988766 36778888876655 445555544 45554 44 455777777775
No 251
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.16 E-value=0.0078 Score=60.04 Aligned_cols=36 Identities=36% Similarity=0.409 Sum_probs=32.7
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
.++|||||-|..|+.++..++.+|++|+++|+++..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~ 37 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDS 37 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 378999999999999999999999999999987544
No 252
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.16 E-value=0.015 Score=59.64 Aligned_cols=120 Identities=17% Similarity=0.098 Sum_probs=69.5
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
-+.+++|+|+|+|..|.++|+.|+..|++|.++|+........... .+. ...+. ........+.+.++|+|
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~--~l~------~~gi~-~~~~~~~~~~~~~~dlV 81 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSN--ELK------ELGVK-LVLGENYLDKLDGFDVI 81 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHH--HHH------hCCCE-EEeCCCChHHhccCCEE
Confidence 3568899999999999999999999999999999865321100000 000 00000 00011223445789988
Q ss_pred EEeccCChhhhc-----------ccCH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490 254 VCCLSLNKQTAG-----------IVNK-SFL-SSMKKGSLLVNIARGGLLDYEAIAHYLECGH 303 (370)
Q Consensus 254 ~l~lP~t~~t~~-----------li~~-~~l-~~mk~gailIN~sRg~~vd~~aL~~aL~~g~ 303 (370)
+.. |.-+.+.. +++. +.+ ...+...+-|--+.|..-..+-|...|....
T Consensus 82 V~S-pgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g 143 (458)
T PRK01710 82 FKT-PSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEG 143 (458)
T ss_pred EEC-CCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 886 53322221 1221 122 2223335566666788887777778887543
No 253
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.10 E-value=0.0031 Score=54.21 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=69.7
Q ss_pred EEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccC
Q 017490 180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSL 259 (370)
Q Consensus 180 vGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~ 259 (370)
|+|+|.|.||..+|.+|+..|++|..+.|.. ....... ..+.+....-..............+.....|+|++|+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKE--QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHH--HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhh--eeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 6899999999999999988999999999875 2110000 011111000000000000011123466789999999874
Q ss_pred ChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490 260 NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 307 (370)
Q Consensus 260 t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga 307 (370)
. ++...+.. .-..+++++.++-.-.| +-.++.+.+.+...++.++
T Consensus 78 ~-~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g 122 (151)
T PF02558_consen 78 Y-QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGG 122 (151)
T ss_dssp G-GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEE
T ss_pred c-chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEE
Confidence 3 44444432 44455667677766555 4556777777755566543
No 254
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.10 E-value=0.018 Score=54.52 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=45.2
Q ss_pred ceEEEEec-CchhHHHHHHhcc-CCCEEEE-EcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490 178 KTVFILGF-GNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 252 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~~-~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 252 (370)
.+|+|+|+ |.||+.+++.+.. -++++.+ +|+...... .. ...+ .+.+++++++.+|+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~-----------------~~-~~~~i~~~~dl~~ll~~~Dv 63 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV-----------------GQ-GALGVAITDDLEAVLADADV 63 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-----------------cc-CCCCccccCCHHHhccCCCE
Confidence 47999998 9999999998875 4788655 776643310 00 1111 34688998889999
Q ss_pred EEEeccC
Q 017490 253 VVCCLSL 259 (370)
Q Consensus 253 V~l~lP~ 259 (370)
|+.+.|.
T Consensus 64 Vid~t~p 70 (257)
T PRK00048 64 LIDFTTP 70 (257)
T ss_pred EEECCCH
Confidence 9988763
No 255
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.06 E-value=0.0014 Score=60.33 Aligned_cols=155 Identities=21% Similarity=0.201 Sum_probs=85.4
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccccccc-ccch-hhhcc-ccccc------cc----cccCCCCC
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC-QSSA-LAVKN-GIIDD------LV----DEKGCHED 242 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-~~~~-~~~~~-~~~~~------~~----~~~~~~~~ 242 (370)
.=+.|+|||.|.||.-+|+.+...|++|+.+|++.+....... .+++ .++.. +..+. ++ +......+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 4468999999999999999999999999999988654211100 0000 00000 00000 00 00001245
Q ss_pred HHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCC
Q 017490 243 IFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND 321 (370)
Q Consensus 243 l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~ 321 (370)
+.++.+.+|+|+=++-.+-+.+.=+-++.=...|+.++|. |+|. +...++..+++.... .+||-.|.+-|.
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~sr-f~GlHFfNPvPv---- 161 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRPSR-FAGLHFFNPVPV---- 161 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccChhh-hceeeccCCchh----
Confidence 5666667777765544333322212222223357776664 4443 456677777776544 478998887663
Q ss_pred cccCCCceEEccCCCCccH
Q 017490 322 PILKFKNVLITPHVGGVTE 340 (370)
Q Consensus 322 pL~~~~nvilTPHia~~t~ 340 (370)
.++=-|+=|+-.+--|.
T Consensus 162 --MKLvEVir~~~TS~eTf 178 (298)
T KOG2304|consen 162 --MKLVEVIRTDDTSDETF 178 (298)
T ss_pred --HHHhhhhcCCCCCHHHH
Confidence 33334555665544333
No 256
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.06 E-value=0.0079 Score=60.11 Aligned_cols=115 Identities=20% Similarity=0.211 Sum_probs=66.8
Q ss_pred HHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cch----------
Q 017490 158 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SSA---------- 222 (370)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~~---------- 222 (370)
|.++++-..|+......|.+++|.|+|+|.+|..+++.|...|. ++..+|...-...--.++ ..+
T Consensus 22 y~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~ 101 (370)
T PRK05600 22 TARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAA 101 (370)
T ss_pred hhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHH
Confidence 44444444566545567999999999999999999999999997 788888753211000000 000
Q ss_pred --hhhcccccc-ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHh
Q 017490 223 --LAVKNGIID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLS 273 (370)
Q Consensus 223 --~~~~~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~ 273 (370)
+.-.+..+. +.........+++++++++|+|+.|+- +.+++.+++....+
T Consensus 102 ~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~ 154 (370)
T PRK05600 102 ERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI 154 (370)
T ss_pred HHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence 000000000 000000012346678889998877664 56788888765443
No 257
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.05 E-value=0.0076 Score=59.90 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=39.8
Q ss_pred HHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 160 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 160 ~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
++++-..|+......|.+++|.|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 11 Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 11 RQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred heechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 333333455444567999999999999999999999998888 688888654
No 258
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=96.05 E-value=0.0047 Score=59.37 Aligned_cols=107 Identities=22% Similarity=0.315 Sum_probs=70.5
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCC------------
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH------------ 240 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 240 (370)
-..++.++.++|+|.+|...+......|+-|..+|-.+...+........+-..+ +. ...+.|
T Consensus 160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~----~e-e~~gGYAk~ms~~~~~~q 234 (356)
T COG3288 160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVE----DE-ESAGGYAKEMSEEFIAKQ 234 (356)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhccccccccc----cc-ccCCCccccCCHHHHHHH
Confidence 4567778899999999999999999999999999865543211111100000000 00 011111
Q ss_pred -CCHHHHHhcCCEEEEe--ccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 241 -EDIFEFASKADVVVCC--LSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 241 -~~l~ell~~aDiV~l~--lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
+-+.+..++.|||+.. +|..|. ..|+.++..+.||||+++||.+
T Consensus 235 ~~~~a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 235 AELVAEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 1234567889999886 565443 4488999999999999999986
No 259
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.03 E-value=0.12 Score=49.56 Aligned_cols=165 Identities=19% Similarity=0.245 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccC----CC-------EEEEEcC
Q 017490 140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR 208 (370)
Q Consensus 140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~----G~-------~V~~~dr 208 (370)
+|-.+++-+++.+|-. ++.|.+.++.|+|.|.-|..+|+.+... |. +++.+|+
T Consensus 4 Ta~V~lAgllnAlk~~----------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~ 67 (279)
T cd05312 4 TAAVALAGLLAALRIT----------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDS 67 (279)
T ss_pred HHHHHHHHHHHHHHHh----------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcC
Confidence 4556778888888742 5678899999999999999999998776 77 7999998
Q ss_pred CCccccccccccchhhhccccccccccccC--CCCCHHHHHh--cCCEEEEeccCChhhhcccCHHHHhcCC---CCcEE
Q 017490 209 SWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS--KADVVVCCLSLNKQTAGIVNKSFLSSMK---KGSLL 281 (370)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~--~aDiV~l~lP~t~~t~~li~~~~l~~mk---~gail 281 (370)
+.--...-.+ +.... ..+..... ...+|.|+++ ++|+++-+- ...++|+++.++.|. +..++
T Consensus 68 ~Gll~~~r~~----l~~~~---~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PII 136 (279)
T cd05312 68 KGLLTKDRKD----LTPFK---KPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPII 136 (279)
T ss_pred CCeEeCCCCc----chHHH---HHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEE
Confidence 6421100000 00000 01111111 2358999999 889887652 134799999999998 89999
Q ss_pred EEcCCCcccCHHHHHHHHH--hCC-ceEEEEecCCCCCCCC---CC---cccCCCceEEccCCCC
Q 017490 282 VNIARGGLLDYEAIAHYLE--CGH-LGGLGIDVAWTEPFDP---ND---PILKFKNVLITPHVGG 337 (370)
Q Consensus 282 IN~sRg~~vd~~aL~~aL~--~g~-i~ga~lDV~~~EPl~~---~~---pL~~~~nvilTPHia~ 337 (370)
.=.|+...--|-.-.++.+ +|+ |.+.|. |+++ +. .-=...|+++-|=++-
T Consensus 137 FaLSNPt~~~E~~pe~a~~~t~G~ai~ATGs------Pf~pv~~~Gr~~~p~Q~NN~~iFPGigl 195 (279)
T cd05312 137 FALSNPTSKAECTAEDAYKWTDGRALFASGS------PFPPVEYNGKTYVPGQGNNAYIFPGIGL 195 (279)
T ss_pred EECCCcCCccccCHHHHHHhhcCCEEEEeCC------CCCCeeeCCeEecCCCcceeeeccchhh
Confidence 9999987643433334444 354 443332 2221 11 1124678899896654
No 260
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.96 E-value=0.054 Score=52.94 Aligned_cols=111 Identities=11% Similarity=0.070 Sum_probs=70.7
Q ss_pred hhHHHHHHhccCCCEEEEEcCCCcccc-------cccc-ccchhh--hcccccc-----ccccccCCCC--CHHHHHhcC
Q 017490 188 IGVELAKRLRPFGVKIIATKRSWASHS-------QVSC-QSSALA--VKNGIID-----DLVDEKGCHE--DIFEFASKA 250 (370)
Q Consensus 188 IG~~vA~~l~~~G~~V~~~dr~~~~~~-------~~~~-~~~~~~--~~~~~~~-----~~~~~~~~~~--~l~ell~~a 250 (370)
||..+|..+...|++|..||+++.... .... ....+. ...+.+. .......... +..+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 688999999989999999999874210 0000 000000 0000000 0000011111 356788999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~ 300 (370)
|+|+-++|.+.+.+.-+-++..+.++++++| +|..+.+....|.+.++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence 9999999999998887777777889999998 55566677788888774
No 261
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.95 E-value=0.016 Score=57.38 Aligned_cols=96 Identities=26% Similarity=0.246 Sum_probs=54.7
Q ss_pred ceEEEEec-CchhHHHHHHhccC-CCEEEE-EcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 178 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~~~-G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
++|+|+|. |.+|+.+++.|... ++++.. ++++......... .+ +. ............+.++++.++|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~---~~--~~--l~~~~~~~~~~~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSE---VH--PH--LRGLVDLNLEPIDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHH---hC--cc--ccccCCceeecCCHHHhhcCCCEEE
Confidence 37999998 99999999999876 678774 4544321110000 00 00 0000000001124556667899999
Q ss_pred EeccCChhhhcccCHHHHhc-CCCCcEEEEcCC
Q 017490 255 CCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIAR 286 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~-mk~gailIN~sR 286 (370)
+|+|.. ... +.... .+.|..+|+.|-
T Consensus 74 ~alP~~-~s~-----~~~~~~~~~G~~VIDlS~ 100 (346)
T TIGR01850 74 LALPHG-VSA-----ELAPELLAAGVKVIDLSA 100 (346)
T ss_pred ECCCch-HHH-----HHHHHHHhCCCEEEeCCh
Confidence 999954 222 22222 256889999883
No 262
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.95 E-value=0.093 Score=49.64 Aligned_cols=171 Identities=13% Similarity=0.105 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-----------EEEEEcC
Q 017490 140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR 208 (370)
Q Consensus 140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-----------~V~~~dr 208 (370)
+|--+++-+++.+|-. ++.|.+.++.|+|.|..|-.+|+.+...+. +++.+|+
T Consensus 4 TaaV~lAgllnAlk~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~ 67 (254)
T cd00762 4 TASVAVAGLLAALKVT----------------KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDR 67 (254)
T ss_pred hHHHHHHHHHHHHHHh----------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECC
Confidence 4556777888887732 567899999999999999999999987665 6888887
Q ss_pred CCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCEEEEeccCChhhhcccCHHHHhcCC---CCcEEEE
Q 017490 209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVVCCLSLNKQTAGIVNKSFLSSMK---KGSLLVN 283 (370)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~lP~t~~t~~li~~~~l~~mk---~gailIN 283 (370)
..--...-.+. ..+. ....+.........+|.|+++ +.|+++-.- ...++|.++.++.|. +..++.=
T Consensus 68 ~Gll~~~r~~l-~~~~---~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 68 KGLLVKNRKET-CPNE---YHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred CCeEeCCCCcc-CHHH---HHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 64210000000 0000 000001111113468999999 999887642 235799999999998 8999999
Q ss_pred cCCCcccCHHHHHHHHHh--C-CceEEEEecCCCCCCCCCC---cccCCCceEEccCCCC
Q 017490 284 IARGGLLDYEAIAHYLEC--G-HLGGLGIDVAWTEPFDPND---PILKFKNVLITPHVGG 337 (370)
Q Consensus 284 ~sRg~~vd~~aL~~aL~~--g-~i~ga~lDV~~~EPl~~~~---pL~~~~nvilTPHia~ 337 (370)
.|+...--|-.-.++.+- | .|.+-|.-.+..+- +. ..=...|+++-|=++-
T Consensus 140 LSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~---~g~~~~~~Q~NN~~iFPGigl 196 (254)
T cd00762 140 LSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL---NGGTYKPGQGNNLYIFPGVAL 196 (254)
T ss_pred CCCcCCccccCHHHHHhhcCCCEEEEECCCCCCccc---CCceeecccccceeeccchhh
Confidence 998876334333333333 3 34433322111111 11 1125788999996654
No 263
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.92 E-value=0.015 Score=55.39 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=59.3
Q ss_pred ceEEEEecCchhHHHHHHhccC-CCEEEE-EcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~-G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~ 254 (370)
.+|||||+|.||+.+++.+... ++++.+ +++..... .. .+... ......+++++-.+.|+|+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~-~~--------------~~~~~~~~~~~~d~~~l~~~~DvVv 66 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSID-AV--------------RRALGEAVRVVSSVDALPQRPDLVV 66 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHH-HH--------------hhhhccCCeeeCCHHHhccCCCEEE
Confidence 4799999999999999998765 566543 33322110 00 00000 0112457777745689999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHhCCc
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDY---EAIAHYLECGHL 304 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~---~aL~~aL~~g~i 304 (370)
.|.|.. .... -....++.|.-++-.+-|...|. +.|.++.+++..
T Consensus 67 e~t~~~-~~~e----~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~ 114 (265)
T PRK13303 67 ECAGHA-ALKE----HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA 114 (265)
T ss_pred ECCCHH-HHHH----HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence 998843 2211 12223445555555555544443 446666665544
No 264
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.92 E-value=0.012 Score=49.05 Aligned_cols=95 Identities=21% Similarity=0.286 Sum_probs=51.5
Q ss_pred eEEEEe-cCchhHHHHHHhcc-CCCEE-EEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCEEE
Q 017490 179 TVFILG-FGNIGVELAKRLRP-FGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADVVV 254 (370)
Q Consensus 179 tvGIiG-lG~IG~~vA~~l~~-~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiV~ 254 (370)
+||||| .|.+|+.+.++|.. ..+++ .++.++......... .+..+.+ ..... ...+. +.+.++|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~---~~~~~~~-----~~~~~~~~~~~-~~~~~~Dvvf 71 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSE---VFPHPKG-----FEDLSVEDADP-EELSDVDVVF 71 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHH---TTGGGTT-----TEEEBEEETSG-HHHTTESEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeeh---hcccccc-----ccceeEeecch-hHhhcCCEEE
Confidence 699999 99999999999875 45564 445544312111000 0000000 00000 11123 4459999999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg 287 (370)
+|+|.... ..+. ... +++|..+|+.|..
T Consensus 72 ~a~~~~~~-~~~~-~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 72 LALPHGAS-KELA-PKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp E-SCHHHH-HHHH-HHH---HHTTSEEEESSST
T ss_pred ecCchhHH-HHHH-HHH---hhCCcEEEeCCHH
Confidence 99985432 2221 112 5789999998753
No 265
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.89 E-value=0.011 Score=48.23 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=52.6
Q ss_pred hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc--cccCCCCCHHHHHhcCCEEEEeccCChhhhc
Q 017490 188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKGCHEDIFEFASKADVVVCCLSLNKQTAG 265 (370)
Q Consensus 188 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~ 265 (370)
-+..+++.|+..|++|.+||+........ ... .......++++.++.+|+|+++.+- ++-+.
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~ 81 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIK---------------ELGKLEGVEVCDDLEEALKGADAVVLATDH-DEFRE 81 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHH---------------HHCHHHCEEEESSHHHHHTTESEEEESS---GGGGC
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHH---------------hhCCccceEEecCHHHHhcCCCEEEEEecC-HHHhc
Confidence 45788999999999999999986542110 000 0011235789999999999999874 44444
Q ss_pred ccCHHHHhcCCCCcEEEEc
Q 017490 266 IVNKSFLSSMKKGSLLVNI 284 (370)
Q Consensus 266 li~~~~l~~mk~gailIN~ 284 (370)
+--.+..+.|+++.++|++
T Consensus 82 l~~~~~~~~~~~~~~iiD~ 100 (106)
T PF03720_consen 82 LDWEEIAKLMRKPPVIIDG 100 (106)
T ss_dssp CGHHHHHHHSCSSEEEEES
T ss_pred cCHHHHHHhcCCCCEEEEC
Confidence 3234455678899999997
No 266
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.88 E-value=0.072 Score=51.59 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=69.7
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
.|++++|||-=.=-..++++|.+.|++|..+.-...... ...+. ...+.+++++++|+|++
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~----------------~~g~~---~~~~~~~~~~~ad~ii~ 61 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHG----------------FTGAT---KSSSLEEALSDVDVIIL 61 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccc----------------cCCce---eeccHHHHhccCCEEEE
Confidence 378999999888888999999999999987542211100 00000 12356788999999999
Q ss_pred eccCChhh---hc-------ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCce
Q 017490 256 CLSLNKQT---AG-------IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305 (370)
Q Consensus 256 ~lP~t~~t---~~-------li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ 305 (370)
-+|.+.+. +. -++.+.++.||+|.+++ ++.+. .. +-+.+++..+.
T Consensus 62 ~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~ 116 (296)
T PRK08306 62 PVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRK 116 (296)
T ss_pred CCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCe
Confidence 88864322 11 13578999999998544 34432 22 44666777776
No 267
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.88 E-value=0.052 Score=52.86 Aligned_cols=65 Identities=25% Similarity=0.281 Sum_probs=48.3
Q ss_pred cccCceEEEEec---CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 174 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
.+.|++|++||= +++.++++..+..+|++|....+..-.. .. ........++++.++.+
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~-----------------~~-~~~~~~~~d~~ea~~~a 214 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLP-----------------EG-MPEYGVHTDLDEVIEDA 214 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCc-----------------cc-ccceEEECCHHHHhCCC
Confidence 378999999997 5899999999999999999987643210 01 11111346899999999
Q ss_pred CEEEEe
Q 017490 251 DVVVCC 256 (370)
Q Consensus 251 DiV~l~ 256 (370)
|+|...
T Consensus 215 Dvvyt~ 220 (305)
T PRK00856 215 DVVMML 220 (305)
T ss_pred CEEEEC
Confidence 998774
No 268
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.85 E-value=0.0078 Score=55.96 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=48.5
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHH-HhcCCEEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEF-ASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~el-l~~aDiV~l 255 (370)
+++.|+|+|.+|..+|+.|...|++|+.+|++.......... .+. ...+...+ ...-|+++ +.++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~--~~~------~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD--ELD------THVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh--hcc------eEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 578999999999999999999999999999886542110000 000 00000000 11234444 678999999
Q ss_pred eccCCh
Q 017490 256 CLSLNK 261 (370)
Q Consensus 256 ~lP~t~ 261 (370)
+.....
T Consensus 73 ~t~~d~ 78 (225)
T COG0569 73 ATGNDE 78 (225)
T ss_pred eeCCCH
Confidence 887543
No 269
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.85 E-value=0.015 Score=58.90 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=64.8
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
.++|.|||+|.+|.++|+.|+..|++|.++|++...... .....+. .....+....++|+|+.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~dlvV~s 66 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQS---------------CPYIHER-YLENAEEFPEQVDLVVRS 66 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccch---------------hHHHhhh-hcCCcHHHhcCCCEEEEC
Confidence 468999999999999999999999999999976432100 0000000 011233445778988777
Q ss_pred ccCChhhh----------cccCHHH--Hhc--CCC-CcEEEEcCCCcccCHHHHHHHHHhC
Q 017490 257 LSLNKQTA----------GIVNKSF--LSS--MKK-GSLLVNIARGGLLDYEAIAHYLECG 302 (370)
Q Consensus 257 lP~t~~t~----------~li~~~~--l~~--mk~-gailIN~sRg~~vd~~aL~~aL~~g 302 (370)
.+..+... .++.... +.. +.+ -.+=|--+-|..-..+-|.+.|+..
T Consensus 67 ~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~ 127 (418)
T PRK00683 67 PGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL 127 (418)
T ss_pred CCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence 65432211 1222211 111 212 2455555668877777777777753
No 270
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.83 E-value=0.049 Score=47.80 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=65.3
Q ss_pred cCceEEEEe--cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc----cCCCCCHHHHHhc
Q 017490 176 LGKTVFILG--FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE----KGCHEDIFEFASK 249 (370)
Q Consensus 176 ~g~tvGIiG--lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~ell~~ 249 (370)
.|++|++|| .+++.++++..+..||+++..+.+..-..+..... +.. ..+...+ .....++++.+++
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~---~~~----~~~~~~~~g~~i~~~~~~~e~l~~ 73 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEV---LEK----AKKNAKKNGGKITITDDIEEALKG 73 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHH---HHH----HHHHHHHHTTEEEEESSHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHH---HHH----HHHHHHHhCCCeEEEeCHHHhcCC
Confidence 489999999 38999999999999999999887653111000000 000 0000011 1123689999999
Q ss_pred CCEEEEeccCC---hh--------hhcccCHHHHhcCCCCcEEEEcC
Q 017490 250 ADVVVCCLSLN---KQ--------TAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 250 aDiV~l~lP~t---~~--------t~~li~~~~l~~mk~gailIN~s 285 (370)
+|+|..-.-.. .+ ....++++.++.+|++++|.-+.
T Consensus 74 aDvvy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 74 ADVVYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp -SEEEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CCEEEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 99988764431 11 12567899999999999998874
No 271
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.83 E-value=0.02 Score=55.65 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=59.1
Q ss_pred ceEEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
++|+|||.|.+|+.+|..|...| .+|..+|++........ .++..... ...........+. +.++.||+|++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a---~dL~~~~~--~~~~~~~i~~~~~-~~l~~aDIVIi 74 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEA---LDLEDALA--FLPSPVKIKAGDY-SDCKDADIVVI 74 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhH---hhHHHHhh--ccCCCeEEEcCCH-HHhCCCCEEEE
Confidence 47999999999999999998888 48999999765421110 00000000 0000000011233 45789999999
Q ss_pred eccCChh---hh-ccc--CH-------HHHhcCCCCcEEEEcC
Q 017490 256 CLSLNKQ---TA-GIV--NK-------SFLSSMKKGSLLVNIA 285 (370)
Q Consensus 256 ~lP~t~~---t~-~li--~~-------~~l~~mk~gailIN~s 285 (370)
+...... +| .++ |. +.+....|.+++|+++
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 9764211 11 111 11 2345567789999997
No 272
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.83 E-value=0.016 Score=56.12 Aligned_cols=125 Identities=16% Similarity=0.113 Sum_probs=66.3
Q ss_pred ceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l 255 (370)
++|+|||.|.+|..+|..+...|. +|..+|+....... .. .++..... ..... ......+. +.++.||+|++
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~-~~--~dl~~~~~--~~~~~~~i~~~~d~-~~~~~aDiVii 76 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQG-KA--LDIAEAAP--VEGFDTKITGTNDY-EDIAGSDVVVI 76 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHH-HH--HHHHhhhh--hcCCCcEEEeCCCH-HHHCCCCEEEE
Confidence 589999999999999999887654 99999986543211 00 00000000 00000 00012345 45799999999
Q ss_pred ecc--CChh---------hhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE
Q 017490 256 CLS--LNKQ---------TAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG 308 (370)
Q Consensus 256 ~lP--~t~~---------t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~ 308 (370)
+.. ..+. +..++. .+.+...-+.+++|+.+...-+-...+.+. +...++.|.+
T Consensus 77 ~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g 144 (307)
T PRK06223 77 TAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA 144 (307)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence 863 2211 111111 112333346788888865543444444442 1124566654
No 273
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.82 E-value=0.11 Score=52.22 Aligned_cols=193 Identities=20% Similarity=0.159 Sum_probs=116.7
Q ss_pred cCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCC
Q 017490 121 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG 200 (370)
Q Consensus 121 ~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G 200 (370)
+..|+|.|.- -..+|=.+++.+++.+|-. |+.|+..+|.+.|.|.-|-.+++.+.+.|
T Consensus 165 ~~~IPvFhDD------qqGTaiv~lA~llnalk~~----------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g 222 (432)
T COG0281 165 RMNIPVFHDD------QQGTAIVTLAALLNALKLT----------------GKKLKDQKIVINGAGAAGIAIADLLVAAG 222 (432)
T ss_pred cCCCCccccc------ccHHHHHHHHHHHHHHHHh----------------CCCccceEEEEeCCcHHHHHHHHHHHHhC
Confidence 4468888852 1346777888888888642 68899999999999999999999999999
Q ss_pred C---EEEEEcCCCcccccccc-ccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcC
Q 017490 201 V---KIIATKRSWASHSQVSC-QSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM 275 (370)
Q Consensus 201 ~---~V~~~dr~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~m 275 (370)
+ +|+.+|+..--...-.+ ....+.+ .... ....... ++.+..+|+++-+ + ..+.+.++.++.|
T Consensus 223 ~~~~~i~~~D~~G~l~~~r~~~~~~~~k~------~~a~~~~~~~~~-~~~~~~adv~iG~---S--~~G~~t~e~V~~M 290 (432)
T COG0281 223 VKEENIFVVDRKGLLYDGREDLTMNQKKY------AKAIEDTGERTL-DLALAGADVLIGV---S--GVGAFTEEMVKEM 290 (432)
T ss_pred CCcccEEEEecCCcccCCCcccccchHHH------HHHHhhhccccc-cccccCCCEEEEc---C--CCCCcCHHHHHHh
Confidence 9 59999986432100000 0000100 0110 1111111 4478899988765 2 2289999999999
Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHHhC-CceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHH-----HHHHHHHH
Q 017490 276 KKGSLLVNIARGGLLDYEAIAHYLECG-HLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEH-----SYRSMAKV 349 (370)
Q Consensus 276 k~gailIN~sRg~~vd~~aL~~aL~~g-~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~-----~~~~~~~~ 349 (370)
.+..++.=.|....--..+.+..-..| .|-+- .-|..|+ +.-|+++-|-+.--.-. --+.|.-.
T Consensus 291 a~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaT------Grsd~Pn----QvNNvL~FPgIfrGaLd~rA~~ItdeM~~A 360 (432)
T COG0281 291 AKHPIIFALANPTPEITPEDAKEWGDGAAIVAT------GRSDYPN----QVNNVLIFPGIFRGALDVRAKTITDEMKIA 360 (432)
T ss_pred ccCCEEeecCCCCccCCHHHHhhcCCCCEEEEe------CCCCCcc----cccceeEcchhhhhhHhhccccCCHHHHHH
Confidence 999999999886632222222222222 33221 1122222 77899999987643211 12345555
Q ss_pred HHHHHHHH
Q 017490 350 VGDVALQL 357 (370)
Q Consensus 350 ~~~ni~~~ 357 (370)
+++.|-.+
T Consensus 361 Aa~AiA~~ 368 (432)
T COG0281 361 AAEAIADL 368 (432)
T ss_pred HHHHHHhh
Confidence 55555444
No 274
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.75 E-value=0.05 Score=56.15 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=69.5
Q ss_pred cccCceEEEEec----------CchhHHHHHHhccCCCEEEEEcCCCccccccccc---cchhhhcc--cccc-cccccc
Q 017490 174 TLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKN--GIID-DLVDEK 237 (370)
Q Consensus 174 ~l~g~tvGIiGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~---~~~~~~~~--~~~~-~~~~~~ 237 (370)
.+.|++|+|+|+ ..-...+++.|...|.+|.+||+........... ..++.++. ++.. ......
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 589999999998 4577899999999999999999974331000000 00000000 0000 000000
Q ss_pred CCCCCHHHHHhcCCEEEEeccCChhhhcccCHH-HHhcCCCCcEEEEcCCCcccCHHHHH
Q 017490 238 GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKS-FLSSMKKGSLLVNIARGGLLDYEAIA 296 (370)
Q Consensus 238 ~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~-~l~~mk~gailIN~sRg~~vd~~aL~ 296 (370)
....++++.++.||+|+++.+.. +.+.+ +-+ ..+.|++..+++|. |+ ++|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~-ef~~l-~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWD-EFKTL-DYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCCh-Hhccc-CHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 11235678899999999998743 34433 433 35567766689985 43 45655543
No 275
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.73 E-value=0.025 Score=54.40 Aligned_cols=100 Identities=22% Similarity=0.346 Sum_probs=64.1
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHH--
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEF-- 246 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~el-- 246 (370)
....|+++.|+|.|..+++++..|+..|+ +|.+++|+..+...-. +...+.+ ....+.++
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La--------------~~~~~~~~~~~~~~~~~~~~ 187 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA--------------DLFGELGAAVEAAALADLEG 187 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH--------------HHhhhccccccccccccccc
Confidence 45679999999999999999999999996 7999999876521111 1111111 01112111
Q ss_pred HhcCCEEEEeccCChhhh---cccCHHHHhcCCCCcEEEEcCCCcc
Q 017490 247 ASKADVVVCCLSLNKQTA---GIVNKSFLSSMKKGSLLVNIARGGL 289 (370)
Q Consensus 247 l~~aDiV~l~lP~t~~t~---~li~~~~l~~mk~gailIN~sRg~~ 289 (370)
+.++|+|+.++|.--.-. .+++ ...++++.++.++--.+.
T Consensus 188 ~~~~dliINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~ 230 (283)
T COG0169 188 LEEADLLINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL 230 (283)
T ss_pred ccccCEEEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC
Confidence 116999999999643321 1334 445777887777755543
No 276
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.72 E-value=0.015 Score=58.19 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=36.1
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 209 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~ 209 (370)
|+......+.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus 125 ~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 125 VGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 43323356899999999999999999999999998 79999876
No 277
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.71 E-value=0.019 Score=60.13 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=34.9
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.+|++.|+|.|.+|++++..|...|++|++++|+..
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 57899999999999999999999999999999998754
No 278
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=95.71 E-value=0.15 Score=55.31 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=94.9
Q ss_pred CCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC
Q 017490 122 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV 201 (370)
Q Consensus 122 ~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~ 201 (370)
..|+|.|. +- ..+|=-+++.+++.+|-. ++.+...++.|.|.|.-|..+|+.+...|.
T Consensus 152 ~~ip~f~D-D~-----~GTa~v~lA~l~na~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~ 209 (752)
T PRK07232 152 MDIPVFHD-DQ-----HGTAIISAAALLNALELV----------------GKKIEDVKIVVSGAGAAAIACLNLLVALGA 209 (752)
T ss_pred cCCCeecc-cc-----chHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECccHHHHHHHHHHHHcCC
Confidence 36888886 22 346777788888888742 577899999999999999999999998898
Q ss_pred ---EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCC
Q 017490 202 ---KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKG 278 (370)
Q Consensus 202 ---~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~g 278 (370)
+++.+|+..--...-.. .+..+. ..++.. ....+|.|+++.+|+++-. . +.++++++.++.|.+.
T Consensus 210 ~~~~i~~~D~~G~i~~~r~~---~~~~~k---~~~a~~-~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~ 277 (752)
T PRK07232 210 KKENIIVCDSKGVIYKGRTE---GMDEWK---AAYAVD-TDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADN 277 (752)
T ss_pred CcccEEEEcCCCeecCCCcc---cccHHH---HHHhcc-CCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccC
Confidence 79999976421100000 000000 011111 2235899999999987654 2 2589999999999999
Q ss_pred cEEEEcCCCcc
Q 017490 279 SLLVNIARGGL 289 (370)
Q Consensus 279 ailIN~sRg~~ 289 (370)
.++.=.|....
T Consensus 278 piifalsNP~~ 288 (752)
T PRK07232 278 PIIFALANPDP 288 (752)
T ss_pred CEEEecCCCCc
Confidence 99999998775
No 279
>PRK12862 malic enzyme; Reviewed
Probab=95.67 E-value=0.14 Score=55.73 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=94.7
Q ss_pred CeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-
Q 017490 123 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 201 (370)
Q Consensus 123 gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~- 201 (370)
.|+|.|. +- ..+|=.+++.+++.+|-. ++.+...+|.|.|.|.-|..+|+.+...|.
T Consensus 161 ~ip~f~D-D~-----~GTa~v~la~l~~a~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 161 KIPVFHD-DQ-----HGTAIIVAAALLNGLKLV----------------GKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCceEec-Cc-----ccHHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 6899986 22 346777888888888742 578899999999999999999999998898
Q ss_pred --EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCc
Q 017490 202 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS 279 (370)
Q Consensus 202 --~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga 279 (370)
+++.+|+..--...-.+....+. ..++.. ....+|.|+++.+|+++-. . +.++++++.++.|.+..
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~~------~~~a~~-~~~~~l~e~~~~~~v~iG~-s----~~g~~~~~~v~~M~~~p 286 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPWK------ARYAQK-TDARTLAEVIEGADVFLGL-S----AAGVLKPEMVKKMAPRP 286 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHHH------HHHhhh-cccCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCC
Confidence 79999975421000000000000 011111 1235899999999988754 2 25899999999999999
Q ss_pred EEEEcCCCcc
Q 017490 280 LLVNIARGGL 289 (370)
Q Consensus 280 ilIN~sRg~~ 289 (370)
++.=.|....
T Consensus 287 iifalsNP~~ 296 (763)
T PRK12862 287 LIFALANPTP 296 (763)
T ss_pred EEEeCCCCcc
Confidence 9999998775
No 280
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.66 E-value=0.031 Score=53.87 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=34.4
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 212 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~ 212 (370)
.+.|+++.|+|.|..|++++..|...|+ +|.++||+..+
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~k 163 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSR 163 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHH
Confidence 3568999999999999999999998998 79999998654
No 281
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.64 E-value=0.038 Score=53.37 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=34.2
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCc
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 211 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~ 211 (370)
..+.|+++.|+|.|..+++++..+...|+ +|.+++|+..
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 35788999999999999999998888887 7999999853
No 282
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.58 E-value=0.018 Score=57.85 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=61.7
Q ss_pred cCceEEEEec-CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHH-HHhcCC
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFE-FASKAD 251 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~e-ll~~aD 251 (370)
.-++|+|+|. |.+|+++.+.|... +++|..+.+.......... .++ .+.. ......+++. .++++|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~-----~~~-----~l~~~~~~~~~~~~~~~~~~~D 106 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGS-----VFP-----HLITQDLPNLVAVKDADFSDVD 106 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchh-----hCc-----cccCccccceecCCHHHhcCCC
Confidence 4568999996 99999999999876 7788877654322110000 000 0000 0001122222 257899
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHH
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEA 294 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~a 294 (370)
+|++++|.. .. .+....|+.|..+|+.|.....+.++
T Consensus 107 vVf~Alp~~-~s-----~~i~~~~~~g~~VIDlSs~fRl~~~~ 143 (381)
T PLN02968 107 AVFCCLPHG-TT-----QEIIKALPKDLKIVDLSADFRLRDIA 143 (381)
T ss_pred EEEEcCCHH-HH-----HHHHHHHhCCCEEEEcCchhccCCcc
Confidence 999999853 22 34444456789999999665555543
No 283
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.55 E-value=0.042 Score=46.12 Aligned_cols=106 Identities=22% Similarity=0.175 Sum_probs=57.3
Q ss_pred eEEEEec-CchhHHHHHHhcc-CCCEE-EEEcCCCccccccccccchhhhccccccccc--cccC--CCCCHHHHHhcCC
Q 017490 179 TVFILGF-GNIGVELAKRLRP-FGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKG--CHEDIFEFASKAD 251 (370)
Q Consensus 179 tvGIiGl-G~IG~~vA~~l~~-~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~ell~~aD 251 (370)
+|+|+|+ |+||+.+++.+.. -|+++ -++++...+.. ..+ +.+.. ...+ ...++++++.++|
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~-g~d-----------~g~~~~~~~~~~~v~~~l~~~~~~~D 69 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKV-GKD-----------VGELAGIGPLGVPVTDDLEELLEEAD 69 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTT-TSB-----------CHHHCTSST-SSBEBS-HHHHTTH-S
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccc-cch-----------hhhhhCcCCcccccchhHHHhcccCC
Confidence 7999999 9999999999886 78884 56676652210 000 00110 0111 2478999999999
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~ 301 (370)
+|+-.. ..+.+...+ +.. ++.|.-+|-...|---++.+.++.+.+
T Consensus 70 VvIDfT-~p~~~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 70 VVIDFT-NPDAVYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp EEEEES--HHHHHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred EEEEcC-ChHHhHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 888764 222222222 112 334666665556654334344444443
No 284
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.54 E-value=0.0084 Score=56.34 Aligned_cols=101 Identities=22% Similarity=0.333 Sum_probs=58.8
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcccccccccc----chh------------hhcccccc-ccc
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQS----SAL------------AVKNGIID-DLV 234 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~----~~~------------~~~~~~~~-~~~ 234 (370)
..|++++|.|+|+|.+|..+|+.|...|. ++..+|...-...--..+. .+. ...+..+. +..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 56899999999999999999999998887 6888886543211000000 000 00000000 000
Q ss_pred cccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhc
Q 017490 235 DEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 274 (370)
Q Consensus 235 ~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~ 274 (370)
......+++.++++++|+|+.++- +.+++.+++....+.
T Consensus 100 ~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~ 138 (240)
T TIGR02355 100 NAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA 138 (240)
T ss_pred eccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc
Confidence 000011235667888998888774 567777777655443
No 285
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.53 E-value=0.018 Score=59.59 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=66.6
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
+.|++|.|+|+|.+|.+.++.|+..|++|+++|...... .. .. ...+ .........+.+.++|+|+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~-~~-l~-----------~~g~-~~~~~~~~~~~l~~~D~VV 75 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDAL-RP-HA-----------ERGV-ATVSTSDAVQQIADYALVV 75 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHH-HH-HH-----------hCCC-EEEcCcchHhHhhcCCEEE
Confidence 468999999999999999999999999999999653221 00 00 0000 0001112335567889887
Q ss_pred EeccCChhhh----------cccCHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490 255 CCLSLNKQTA----------GIVNKSFLS-SM--------KKGSLLVNIARGGLLDYEAIAHYLECG 302 (370)
Q Consensus 255 l~lP~t~~t~----------~li~~~~l~-~m--------k~gailIN~sRg~~vd~~aL~~aL~~g 302 (370)
..-.-.+... .++++-.|. .+ +...+-|--+.|..-...-+.+.|+..
T Consensus 76 ~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~ 142 (488)
T PRK03369 76 TSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA 142 (488)
T ss_pred ECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence 7632221111 122222221 11 112455555678888788788888763
No 286
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=95.52 E-value=0.035 Score=53.77 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=27.4
Q ss_pred eEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490 179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRS 209 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~ 209 (370)
+|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 58999999999999999999998 68888754
No 287
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.48 E-value=0.015 Score=51.13 Aligned_cols=71 Identities=20% Similarity=0.244 Sum_probs=48.6
Q ss_pred EEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEEec
Q 017490 180 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 180 vGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l~l 257 (370)
|.|+|. |.+|+.+++.|...|++|+++-|++.+..... . .+.+. .....+++.+.++.+|+|+.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~----~--------~~~~~~d~~d~~~~~~al~~~d~vi~~~ 68 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSP----G--------VEIIQGDLFDPDSVKAALKGADAVIHAA 68 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCT----T--------EEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccccc----c--------cccceeeehhhhhhhhhhhhcchhhhhh
Confidence 578995 99999999999999999999999866421100 0 01110 0112235667888999999999
Q ss_pred cCChh
Q 017490 258 SLNKQ 262 (370)
Q Consensus 258 P~t~~ 262 (370)
+....
T Consensus 69 ~~~~~ 73 (183)
T PF13460_consen 69 GPPPK 73 (183)
T ss_dssp HSTTT
T ss_pred hhhcc
Confidence 85433
No 288
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.47 E-value=0.027 Score=51.91 Aligned_cols=38 Identities=29% Similarity=0.283 Sum_probs=33.9
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 209 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~ 209 (370)
...|+.++|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 23 q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 23 LEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 356889999999999999999999998888 58998876
No 289
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.40 E-value=0.018 Score=53.10 Aligned_cols=97 Identities=20% Similarity=0.269 Sum_probs=61.3
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 251 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD 251 (370)
..+++|++|.|||-|.+|..=++.+...|++|+++.+...+.... +.. .+. ....+ ..-+. +.+..++
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~------~~~-~~~-i~~~~---~~~~~-~~~~~~~ 74 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKA------LIE-EGK-IKWIE---REFDA-EDLDDAF 74 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHH------HHH-hcC-cchhh---cccCh-hhhcCce
Confidence 457999999999999999999999999999999998875221100 000 000 00111 01122 2344488
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
+|+.+++..+ +|+..+...++-.+++|+.
T Consensus 75 lviaAt~d~~-----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 75 LVIAATDDEE-----LNERIAKAARERRILVNVV 103 (210)
T ss_pred EEEEeCCCHH-----HHHHHHHHHHHhCCceecc
Confidence 8888876432 4556666666666777773
No 290
>PRK12861 malic enzyme; Reviewed
Probab=95.38 E-value=0.13 Score=55.93 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=94.8
Q ss_pred CeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-
Q 017490 123 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 201 (370)
Q Consensus 123 gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~- 201 (370)
.|+|.|. +- ..+|=.+++.+++.+|-. ++.+...+|.|.|.|.-|..+|+.+...|.
T Consensus 157 ~ipvf~D-D~-----qGTa~v~lA~llnal~~~----------------gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~ 214 (764)
T PRK12861 157 KIPVFHD-DQ-----HGTAITVSAAFINGLKVV----------------GKSIKEVKVVTSGAGAAALACLDLLVDLGLP 214 (764)
T ss_pred CCCeecc-cc-----chHHHHHHHHHHHHHHHh----------------CCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence 7999986 22 346777888888888742 577899999999999999999999999998
Q ss_pred --EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCc
Q 017490 202 --KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS 279 (370)
Q Consensus 202 --~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga 279 (370)
+++.+|+..--...-.+....+. ..++.. ....+|.|+++.+|+++-. . +.++++++.++.|.+..
T Consensus 215 ~~~i~~~D~~Gli~~~r~~~l~~~k------~~~a~~-~~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~P 282 (764)
T PRK12861 215 VENIWVTDIEGVVYRGRTTLMDPDK------ERFAQE-TDARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARP 282 (764)
T ss_pred hhhEEEEcCCCeeeCCCcccCCHHH------HHHHhh-cCCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCC
Confidence 79999965421000000000000 011111 1336899999999987654 2 25899999999999999
Q ss_pred EEEEcCCCcc
Q 017490 280 LLVNIARGGL 289 (370)
Q Consensus 280 ilIN~sRg~~ 289 (370)
++.=.|....
T Consensus 283 IIFaLsNPtp 292 (764)
T PRK12861 283 LILALANPTP 292 (764)
T ss_pred EEEECCCCCc
Confidence 9999998765
No 291
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.36 E-value=0.08 Score=51.47 Aligned_cols=97 Identities=21% Similarity=0.211 Sum_probs=62.9
Q ss_pred cccCceEEEEecC---chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHH
Q 017490 174 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEF 246 (370)
Q Consensus 174 ~l~g~tvGIiGlG---~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~el 246 (370)
.+.|++|+++|-| ++.++++..+..+|++|....+..-.. +.. + .+.+.+.+ ...++++.
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~--~~~----~-------~~~~~~~G~~v~~~~d~~~a 213 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRM--PKE----I-------LEELKAKGIKVRETESLEEV 213 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccC--CHH----H-------HHHHHHcCCEEEEECCHHHH
Confidence 3789999999985 999999999999999999987643211 100 0 00111111 24689999
Q ss_pred HhcCCEEEEeccCC-------hh-----hhcccCHHHHhcCCCCcEEEEc
Q 017490 247 ASKADVVVCCLSLN-------KQ-----TAGIVNKSFLSSMKKGSLLVNI 284 (370)
Q Consensus 247 l~~aDiV~l~lP~t-------~~-----t~~li~~~~l~~mk~gailIN~ 284 (370)
++.+|+|..-- .. ++ ...-++.+.++.+|+++++.-+
T Consensus 214 ~~~aDvvyt~~-~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHc 262 (301)
T TIGR00670 214 IDEADVLYVTR-IQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHP 262 (301)
T ss_pred hCCCCEEEECC-ccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECC
Confidence 99999997731 11 00 0233566677777777777644
No 292
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.32 E-value=0.023 Score=57.83 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=45.6
Q ss_pred eEEEEecCchhHHHHH---Hh---ccCCCEEEEEcCCCccccccccccchhhhcccccccc-c-cccCCCCCHHHHHhcC
Q 017490 179 TVFILGFGNIGVELAK---RL---RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL-V-DEKGCHEDIFEFASKA 250 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~---~l---~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~ell~~a 250 (370)
+|+|||.|.+|...+- .+ ...|.+|..||+++.........-..+ .... . .......++++.++.|
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~------~~~~~~~~~I~~ttD~~eal~~A 75 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKI------VEELGAPLKIEATTDRREALDGA 75 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHH------HHhcCCCeEEEEeCCHHHHhcCC
Confidence 6999999999998554 22 445779999999765421100000000 0000 0 0011235788999999
Q ss_pred CEEEEeccC
Q 017490 251 DVVVCCLSL 259 (370)
Q Consensus 251 DiV~l~lP~ 259 (370)
|+|+.++|.
T Consensus 76 D~Vi~ai~~ 84 (423)
T cd05297 76 DFVINTIQV 84 (423)
T ss_pred CEEEEeeEe
Confidence 999999983
No 293
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=95.25 E-value=0.034 Score=58.81 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=35.6
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.....|+|||||-|..|+.+++.++.+|++|+++|.++.
T Consensus 18 ~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 18 HGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED 56 (577)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 457889999999999999999999999999999998754
No 294
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.24 E-value=0.035 Score=54.46 Aligned_cols=129 Identities=13% Similarity=0.102 Sum_probs=70.4
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
+..++|+|||.|.+|..+|..+...|. +|..+|.++..... ... +....... ...........+. +.++.||+|
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~~l--d~~~~~~~-~~~~~~I~~~~d~-~~l~~aDiV 78 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-KAL--DISHSNVI-AGSNSKVIGTNNY-EDIAGSDVV 78 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-HHH--HHHhhhhc-cCCCeEEEECCCH-HHhCCCCEE
Confidence 345799999999999999999887774 89999987654210 000 00000000 0000001112455 467999999
Q ss_pred EEeccCC--h--------------hhhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--hCCceEEE
Q 017490 254 VCCLSLN--K--------------QTAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLE--CGHLGGLG 308 (370)
Q Consensus 254 ~l~lP~t--~--------------~t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~--~g~i~ga~ 308 (370)
+++.-.. + ++..++. .+.+....|.+++||.+...-+-...+.+... ..++.|.+
T Consensus 79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 9976321 1 0111111 11244455778999998554333444444332 24566655
No 295
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.15 E-value=0.048 Score=53.33 Aligned_cols=94 Identities=21% Similarity=0.306 Sum_probs=59.7
Q ss_pred cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHh---c
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFAS---K 249 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~---~ 249 (370)
.|++|.|+|.|.+|...++.++..|+ +|++.+++.++....... .++... ...++++... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-------------Ga~~vi~~~~~~~~~~~~~~g~ 235 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-------------GADKLVNPQNDDLDHYKAEKGY 235 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-------------CCcEEecCCcccHHHHhccCCC
Confidence 58899999999999999999999999 688888775442110000 000000 0123333332 2
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg 287 (370)
.|+|+-+.... .+ + ...++.+++|..++.++..
T Consensus 236 ~D~vid~~G~~-~~---~-~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 236 FDVSFEVSGHP-SS---I-NTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred CCEEEECCCCH-HH---H-HHHHHHhhcCCEEEEEccC
Confidence 68888876532 11 1 3466778999999988753
No 296
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.14 E-value=0.054 Score=52.56 Aligned_cols=123 Identities=18% Similarity=0.139 Sum_probs=70.6
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 257 (370)
++|+|+|.|.||.-+|-.|...|.+|..++|...... .......+...+. ... ..........+.....|+|++++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~-~i~~~~Gl~i~~~--g~~-~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLA-AYQQAGGLTLVEQ--GQA-SLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHH-HHhhcCCeEEeeC--Ccc-eeeccCCCCcccccccCEEEEEC
Confidence 4799999999999999999999999999998642210 0000000100000 000 00000011112245789999998
Q ss_pred cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490 258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 307 (370)
Q Consensus 258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga 307 (370)
-.. ++...+ +.....+.+++.+|-.-.| +-.++.+.+.+-..++.++
T Consensus 79 K~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g 125 (305)
T PRK05708 79 KAY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFA 125 (305)
T ss_pred CHH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEE
Confidence 743 333333 3445557788887777555 3456667777766666544
No 297
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.14 E-value=0.031 Score=45.64 Aligned_cols=88 Identities=22% Similarity=0.282 Sum_probs=52.2
Q ss_pred EEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHH----HHhcCCEEE
Q 017490 180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFE----FASKADVVV 254 (370)
Q Consensus 180 vGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~e----ll~~aDiV~ 254 (370)
|-|+|+|.+|+.+++.|+..+.+|+++|+++........ .... -.+...+.+. -++++|.|+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~-------------~~~~~i~gd~~~~~~l~~a~i~~a~~vv 67 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE-------------EGVEVIYGDATDPEVLERAGIEKADAVV 67 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH-------------TTSEEEES-TTSHHHHHHTTGGCESEEE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh-------------cccccccccchhhhHHhhcCccccCEEE
Confidence 569999999999999999977799999987644211110 0111 1122333332 257899999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEE
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLV 282 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailI 282 (370)
++.+....+. .-...++.+-+...+|
T Consensus 68 ~~~~~d~~n~--~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 68 ILTDDDEENL--LIALLARELNPDIRII 93 (116)
T ss_dssp EESSSHHHHH--HHHHHHHHHTTTSEEE
T ss_pred EccCCHHHHH--HHHHHHHHHCCCCeEE
Confidence 9988554332 2233445445554554
No 298
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.12 E-value=0.031 Score=55.17 Aligned_cols=34 Identities=41% Similarity=0.497 Sum_probs=31.1
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
||||||-|..|+.+++.++.+|++|+++|.++..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~ 34 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANS 34 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCC
Confidence 5999999999999999999999999999987543
No 299
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.06 E-value=0.035 Score=62.09 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=45.3
Q ss_pred cCceEEEEecCchhHHHHHHhccC-CCE-------------EEEEcCCCccccccccccchhhhccccccccccccC-CC
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPF-GVK-------------IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CH 240 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~-G~~-------------V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 240 (370)
..|+|+|||.|.||+..|+.|... +.+ |.+.|++......... .+ + .+.... ..
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~---~~--~------~~~~v~lDv 636 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE---GI--E------NAEAVQLDV 636 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH---hc--C------CCceEEeec
Confidence 477999999999999999999653 333 8888887644211000 00 0 000000 12
Q ss_pred CC---HHHHHhcCCEEEEeccC
Q 017490 241 ED---IFEFASKADVVVCCLSL 259 (370)
Q Consensus 241 ~~---l~ell~~aDiV~l~lP~ 259 (370)
.+ +.++++++|+|++++|.
T Consensus 637 ~D~e~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 637 SDSESLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred CCHHHHHHhhcCCCEEEECCCc
Confidence 34 44444689999999995
No 300
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.03 E-value=0.018 Score=57.50 Aligned_cols=76 Identities=20% Similarity=0.343 Sum_probs=44.4
Q ss_pred EEEEecCchhHHHHHHhccCC-C-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490 180 VFILGFGNIGVELAKRLRPFG-V-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 180 vGIiGlG~IG~~vA~~l~~~G-~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 257 (370)
|+|+|.|.+|+.+++.|...+ + +|++.||+..+....... + ....+....-......+++++++++|+|+.|+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~---~--~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEK---L--LGDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhh---c--cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 689999999999999998765 5 899999987652111000 0 00000000000012234778999999999999
Q ss_pred cCC
Q 017490 258 SLN 260 (370)
Q Consensus 258 P~t 260 (370)
|..
T Consensus 76 gp~ 78 (386)
T PF03435_consen 76 GPF 78 (386)
T ss_dssp SGG
T ss_pred ccc
Confidence 854
No 301
>PRK07411 hypothetical protein; Validated
Probab=95.02 E-value=0.031 Score=56.32 Aligned_cols=110 Identities=24% Similarity=0.247 Sum_probs=62.3
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cchh------------hhcccc
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SSAL------------AVKNGI 229 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~~~------------~~~~~~ 229 (370)
|+......|+.++|+|||+|.+|..+|+.|...|. ++..+|...-...-..++ ..+. ...+..
T Consensus 28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~ 107 (390)
T PRK07411 28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY 107 (390)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC
Confidence 44333457899999999999999999999998888 688888653221000000 0000 000000
Q ss_pred cc-ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCC
Q 017490 230 ID-DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKK 277 (370)
Q Consensus 230 ~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ 277 (370)
+. +.........+..+++.++|+|+.|+- +.+++.+++....+.-+|
T Consensus 108 v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 108 CQVDLYETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP 155 (390)
T ss_pred CeEEEEecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence 00 000000011244567889998877754 567788887665544343
No 302
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.00 E-value=0.055 Score=52.87 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=67.6
Q ss_pred ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
.+|+|||.|.||..+|..+...|. ++..+|.+.+.... .. .++....... .. .......+.++ +++||+|++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g-~a--~Dl~~~~~~~-~~-~~v~~~~dy~~-~~~adivvi 77 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKG-EA--MDLQHGSAFL-KN-PKIEADKDYSV-TANSKVVIV 77 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHH-HH--HHHHHhhccC-CC-CEEEECCCHHH-hCCCCEEEE
Confidence 589999999999999998865554 79999987543111 00 0110000000 00 00001134554 899999999
Q ss_pred eccC--Ch-hhh-ccc--CH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHhCCceEEE
Q 017490 256 CLSL--NK-QTA-GIV--NK-------SFLSSMKKGSLLVNIARGGLLDYEAIAHY--LECGHLGGLG 308 (370)
Q Consensus 256 ~lP~--t~-~t~-~li--~~-------~~l~~mk~gailIN~sRg~~vd~~aL~~a--L~~g~i~ga~ 308 (370)
+.-. .+ ++| .++ |. +.+....|.+++|+++...=+-...+.+. +...++.|.+
T Consensus 78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecC
Confidence 6442 21 233 122 11 23445578999999984332223333333 4445666553
No 303
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.99 E-value=0.029 Score=54.61 Aligned_cols=100 Identities=22% Similarity=0.163 Sum_probs=57.3
Q ss_pred eEEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490 179 TVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
+|+|||.|.+|..+|..+...| .+|..+|++........ .++..... . .........+. +.++.||+|+++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a---~dl~~~~~--~-~~~~~i~~~d~-~~l~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEA---MDLAHGTP--F-VKPVRIYAGDY-ADCKGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHH---HHHHcccc--c-cCCeEEeeCCH-HHhCCCCEEEEc
Confidence 6999999999999999998888 58999998764321000 00000000 0 00000011234 558999999999
Q ss_pred ccCChh---hhc-cc--CH-------HHHhcCCCCcEEEEcC
Q 017490 257 LSLNKQ---TAG-IV--NK-------SFLSSMKKGSLLVNIA 285 (370)
Q Consensus 257 lP~t~~---t~~-li--~~-------~~l~~mk~gailIN~s 285 (370)
.+.... ++- ++ |. +.+....+.+++++.+
T Consensus 75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 885321 111 11 11 1234455778888885
No 304
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.93 E-value=0.14 Score=52.38 Aligned_cols=130 Identities=20% Similarity=0.267 Sum_probs=77.6
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV 253 (370)
..+++|.|+|+|.-|.++|+.|...|++|+++|.++.+....... .. .+.. ...+. ...+.+.++|+|
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~---~~------~~~i~~~~g~--~~~~~~~~~d~v 73 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQP---LL------LEGIEVELGS--HDDEDLAEFDLV 73 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhh---hh------ccCceeecCc--cchhccccCCEE
Confidence 449999999999999999999999999999999765541110000 00 0000 01111 122667889999
Q ss_pred EEe--ccCChh------hh--cccC-HHHHhcC--CCCcEEEEcCCCcccCHHHHHHHHHhC--------CceEEEEecC
Q 017490 254 VCC--LSLNKQ------TA--GIVN-KSFLSSM--KKGSLLVNIARGGLLDYEAIAHYLECG--------HLGGLGIDVA 312 (370)
Q Consensus 254 ~l~--lP~t~~------t~--~li~-~~~l~~m--k~gailIN~sRg~~vd~~aL~~aL~~g--------~i~ga~lDV~ 312 (370)
+.. +|.+.. .. .+++ -+.+-+. +.-.+-|--+.|..-.+.-+.+.|++. .|...++|+.
T Consensus 74 V~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~ 153 (448)
T COG0771 74 VKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELL 153 (448)
T ss_pred EECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhh
Confidence 886 333221 11 1222 1223332 222555555568887777777777754 4566778888
Q ss_pred CCC
Q 017490 313 WTE 315 (370)
Q Consensus 313 ~~E 315 (370)
.++
T Consensus 154 ~~~ 156 (448)
T COG0771 154 EQA 156 (448)
T ss_pred ccc
Confidence 764
No 305
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.90 E-value=0.032 Score=56.25 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=35.9
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
|+......|..++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 44333456899999999999999999999988887 688888643
No 306
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.90 E-value=0.15 Score=51.96 Aligned_cols=96 Identities=20% Similarity=0.237 Sum_probs=62.0
Q ss_pred cccccCceEEEEec----------CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCC
Q 017490 172 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE 241 (370)
Q Consensus 172 ~~~l~g~tvGIiGl----------G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (370)
+..+.|++|+|+|+ ..-+..+++.|...|.+|.+||+...... .....+ ..
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~------------------~~~~~~-~~ 369 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEE------------------VRREYG-II 369 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhH------------------HHHhcC-cc
Confidence 45689999999999 45678999999999999999998743210 000011 11
Q ss_pred CHHH-HHhcCCEEEEeccCChhhhcccCHHHHh-cCCCCcEEEEcCCCcc
Q 017490 242 DIFE-FASKADVVVCCLSLNKQTAGIVNKSFLS-SMKKGSLLVNIARGGL 289 (370)
Q Consensus 242 ~l~e-ll~~aDiV~l~lP~t~~t~~li~~~~l~-~mk~gailIN~sRg~~ 289 (370)
.+++ .+..||+|+++.... +.+. ++.+.+. .||...++|++ |+-+
T Consensus 370 ~~~~~~~~~ad~vvi~t~h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 370 PVSEVKSSHYDAIIVAVGHQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred cchhhhhcCCCEEEEccCCH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 1222 367899999997743 3333 4544443 45645688884 5544
No 307
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.85 E-value=0.02 Score=58.23 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=48.1
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHH-HhcCCEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEF-ASKADVV 253 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~el-l~~aDiV 253 (370)
+++.|+|+|.+|+.+|+.|...|++|+++|+++......... ..+ ... .+ ....++++ +.++|.|
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-~~~--------~~~--~gd~~~~~~l~~~~~~~a~~v 69 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-LDV--------RTV--VGNGSSPDVLREAGAEDADLL 69 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-cCE--------EEE--EeCCCCHHHHHHcCCCcCCEE
Confidence 368999999999999999999999999999875532110000 000 000 11 12234555 6789999
Q ss_pred EEeccCCh
Q 017490 254 VCCLSLNK 261 (370)
Q Consensus 254 ~l~lP~t~ 261 (370)
+++++...
T Consensus 70 i~~~~~~~ 77 (453)
T PRK09496 70 IAVTDSDE 77 (453)
T ss_pred EEecCChH
Confidence 99988543
No 308
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.85 E-value=0.057 Score=53.38 Aligned_cols=97 Identities=26% Similarity=0.229 Sum_probs=54.2
Q ss_pred ceEEEEec-CchhHHHHHHhccC-CCEEEE-EcCCCccccccccccchhhhccccccccccc-cCCCCCHHH-HHhcCCE
Q 017490 178 KTVFILGF-GNIGVELAKRLRPF-GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDE-KGCHEDIFE-FASKADV 252 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~~~-G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~e-ll~~aDi 252 (370)
++|+|+|. |.+|+.+++.+... ++++.+ .++.... ..... .+. ..... ...+.++++ ...++|+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g-~~l~~---~~~-------~~~~~~~~~~~~~~~~~~~~vD~ 71 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAG-KPLSD---VHP-------HLRGLVDLVLEPLDPEILAGADV 71 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccC-cchHH---hCc-------ccccccCceeecCCHHHhcCCCE
Confidence 58999996 99999999999876 677655 4432211 00000 000 00000 001222322 4568999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL 290 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v 290 (370)
|++|+|.. ....+. ....+.|..+||.|-.--.
T Consensus 72 Vf~alP~~-~~~~~v----~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 72 VFLALPHG-VSMDLA----PQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred EEECCCcH-HHHHHH----HHHHhCCCEEEECCcccCC
Confidence 99999964 222221 1123578999999844433
No 309
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.83 E-value=0.09 Score=52.05 Aligned_cols=110 Identities=11% Similarity=0.067 Sum_probs=68.9
Q ss_pred ceEEEEecCchhHHHHHHhccC--CCEEEE-EcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCE
Q 017490 178 KTVFILGFGNIGVELAKRLRPF--GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADV 252 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~--G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDi 252 (370)
.+|||||. .+|+..++.++.. ++++.+ +|++.++. .+..++++ .+.++++++.+.|+
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA-----------------~~~A~~~gi~~y~~~eell~d~Di 65 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERS-----------------RALAHRLGVPLYCEVEELPDDIDI 65 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHH-----------------HHHHHHhCCCccCCHHHHhcCCCE
Confidence 58999999 6899999888764 477654 67664432 12233333 46899999999999
Q ss_pred EEEeccCC-hhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEE
Q 017490 253 VVCCLSLN-KQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 307 (370)
Q Consensus 253 V~l~lP~t-~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga 307 (370)
+++++|.+ +...|. .-..+.|+.|.-++.--=-..-+.++|+++.++..+...
T Consensus 66 ~~V~ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 66 ACVVVRSAIVGGQGS--ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred EEEEeCCCCCCccHH--HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 99999853 221211 122334555544444322224566778888888777633
No 310
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.83 E-value=0.039 Score=53.93 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=60.0
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCC
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKAD 251 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aD 251 (370)
-.+++|+|||.|.+|..+|..+...|. ++..+|++...... ... ++.... ....... ...+ .+.+++||
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g-~~~--Dl~~~~----~~~~~~~i~~~~-~~~~~~ad 75 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEG-DAM--DLSHAV----PFTSPTKIYAGD-YSDCKDAD 75 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHH-HHH--HHHhhc----cccCCeEEEeCC-HHHhCCCC
Confidence 357899999999999999999987787 79999986543111 000 010000 0000000 1123 35589999
Q ss_pred EEEEeccC--Ch-hhh-ccc--CH-------HHHhcCCCCcEEEEcCC
Q 017490 252 VVVCCLSL--NK-QTA-GIV--NK-------SFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 252 iV~l~lP~--t~-~t~-~li--~~-------~~l~~mk~gailIN~sR 286 (370)
+|+++.-. .+ ++| .++ |. +.+..-.|.+++|+++.
T Consensus 76 ivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 76 LVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 99997542 22 122 111 11 12333347889999974
No 311
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.80 E-value=0.037 Score=57.07 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=68.3
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
.++.+++|.|+|+|..|+++|+.|...|++|.++|+....... ... ...+. ........+.+.++|+
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~-~l~-----------~~gi~-~~~~~~~~~~~~~~d~ 77 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHK-LIE-----------VTGVA-DISTAEASDQLDSFSL 77 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHH-HHH-----------hcCcE-EEeCCCchhHhcCCCE
Confidence 3578899999999999999999999999999999975432100 000 00000 0001112234567898
Q ss_pred EEEe--ccC-Chhhh-------cccCHHHHhc-------C-CC-CcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490 253 VVCC--LSL-NKQTA-------GIVNKSFLSS-------M-KK-GSLLVNIARGGLLDYEAIAHYLECGH 303 (370)
Q Consensus 253 V~l~--lP~-t~~t~-------~li~~~~l~~-------m-k~-gailIN~sRg~~vd~~aL~~aL~~g~ 303 (370)
|+.. +|. +|... .++..-.+.. + ++ ..+-|--+-|..-...-|.+.|+...
T Consensus 78 vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g 147 (473)
T PRK00141 78 VVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG 147 (473)
T ss_pred EEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 8765 332 22211 1233222321 1 12 24555556788888888888887643
No 312
>PLN02527 aspartate carbamoyltransferase
Probab=94.79 E-value=0.16 Score=49.54 Aligned_cols=98 Identities=24% Similarity=0.232 Sum_probs=60.6
Q ss_pred cccCceEEEEecC---chhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH
Q 017490 174 TLLGKTVFILGFG---NIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE 245 (370)
Q Consensus 174 ~l~g~tvGIiGlG---~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e 245 (370)
.+.|++|+++|-+ ++.++++..+..+ |++|...-+..-.. +.. + .+.+.+.+ ...++++
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~--~~~----~-------~~~~~~~g~~~~~~~d~~~ 214 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKM--KDD----I-------KDYLTSKGVEWEESSDLME 214 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCC--CHH----H-------HHHHHHcCCEEEEEcCHHH
Confidence 3789999999975 5789999988877 99998877643110 000 0 01111111 2468999
Q ss_pred HHhcCCEEEEeccCCh------h------hhcccCHHHHhcCCCCcEEEEc
Q 017490 246 FASKADVVVCCLSLNK------Q------TAGIVNKSFLSSMKKGSLLVNI 284 (370)
Q Consensus 246 ll~~aDiV~l~lP~t~------~------t~~li~~~~l~~mk~gailIN~ 284 (370)
.++.||+|....-..+ + ....++++.++..|+++++.-+
T Consensus 215 a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 215 VASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred HhCCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 9999999988431100 0 1234566666666676666644
No 313
>PRK05086 malate dehydrogenase; Provisional
Probab=94.79 E-value=0.081 Score=51.64 Aligned_cols=103 Identities=23% Similarity=0.220 Sum_probs=58.9
Q ss_pred ceEEEEec-CchhHHHHHHhc---cCCCEEEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcCCE
Q 017490 178 KTVFILGF-GNIGVELAKRLR---PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKADV 252 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~---~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi 252 (370)
++++|||. |.||+.+|..+. ..+..+..+|+......... ++. +. .....-.+ ..+++.+.++.+|+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~al----Dl~--~~--~~~~~i~~~~~~d~~~~l~~~Di 72 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAV----DLS--HI--PTAVKIKGFSGEDPTPALEGADV 72 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceeh----hhh--cC--CCCceEEEeCCCCHHHHcCCCCE
Confidence 47999999 999999997763 45568899998643210000 110 00 00000000 12466778899999
Q ss_pred EEEeccCChh---hh-cccC------HH---HHhcCCCCcEEEEcCCCc
Q 017490 253 VVCCLSLNKQ---TA-GIVN------KS---FLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 253 V~l~lP~t~~---t~-~li~------~~---~l~~mk~gailIN~sRg~ 288 (370)
|++++-.... ++ .++. ++ .+..-.+.+++++++..-
T Consensus 73 VIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 73 VLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 9999764211 11 1121 12 233346788999997654
No 314
>PRK11579 putative oxidoreductase; Provisional
Probab=94.68 E-value=0.051 Score=53.51 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=43.0
Q ss_pred ceEEEEecCchhHH-HHHHhcc-CCCEEEE-EcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCE
Q 017490 178 KTVFILGFGNIGVE-LAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADV 252 (370)
Q Consensus 178 ~tvGIiGlG~IG~~-vA~~l~~-~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi 252 (370)
.+|||||+|.||+. .+..++. -++++.+ +|++..+.. +.......+.+++++++ +.|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~-----------------~~~~~~~~~~~~~ell~~~~vD~ 67 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK-----------------ADWPTVTVVSEPQHLFNDPNIDL 67 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH-----------------hhCCCCceeCCHHHHhcCCCCCE
Confidence 47999999999985 4565544 4788764 666533210 00000113578999996 5799
Q ss_pred EEEeccCC
Q 017490 253 VVCCLSLN 260 (370)
Q Consensus 253 V~l~lP~t 260 (370)
|++++|..
T Consensus 68 V~I~tp~~ 75 (346)
T PRK11579 68 IVIPTPND 75 (346)
T ss_pred EEEcCCcH
Confidence 99999953
No 315
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.67 E-value=0.036 Score=58.28 Aligned_cols=91 Identities=12% Similarity=0.206 Sum_probs=55.6
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCH---HH-HHhcCCEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI---FE-FASKADVV 253 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~e-ll~~aDiV 253 (370)
-.+-|+|+|++|+.+|+.|+..|.+|+++|.+++......+ .+...-.+...+. ++ -++++|.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------------~g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE------------RGIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------CCCeEEEcCCCCHHHHHhcCccccCEE
Confidence 35669999999999999999999999999987654211100 0000011222332 22 25689999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEE
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLV 282 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailI 282 (370)
+++++...++..++-. ...+.+...+|
T Consensus 486 iv~~~~~~~~~~iv~~--~~~~~~~~~ii 512 (558)
T PRK10669 486 LLTIPNGYEAGEIVAS--AREKRPDIEII 512 (558)
T ss_pred EEEcCChHHHHHHHHH--HHHHCCCCeEE
Confidence 9999876665544432 22334555555
No 316
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.61 E-value=0.022 Score=51.87 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=37.4
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
|+....+.|..++|.|+|+|.+|.++++.|...|. ++..+|...
T Consensus 11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 55444567999999999999999999999999998 588888653
No 317
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.60 E-value=0.044 Score=58.28 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=60.3
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH----HhcCCEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF----ASKADVV 253 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV 253 (370)
..+-|+|+|++|+.+++.|...|.++++.|.+++....... .+...-++...+.+-+ +.+||.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~------------~g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK------------YGYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh------------CCCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 46889999999999999999999999999987654211000 0000111222333222 5689999
Q ss_pred EEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 254 VCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 254 ~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
+++++..+.+..++ ...+++.|...+|--+|
T Consensus 469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence 99999766654443 23444556666654444
No 318
>PRK10637 cysG siroheme synthase; Provisional
Probab=94.59 E-value=0.045 Score=56.25 Aligned_cols=98 Identities=13% Similarity=0.185 Sum_probs=59.9
Q ss_pred CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 171 ~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
...+|+|++|.|||-|.++..=++.|..+|++|.++.+...+.... +.. .+.+ .+... .+ .++.++.+
T Consensus 6 ~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~------l~~-~~~i-~~~~~--~~--~~~dl~~~ 73 (457)
T PRK10637 6 IFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTA------WAD-AGML-TLVEG--PF--DESLLDTC 73 (457)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHH------HHh-CCCE-EEEeC--CC--ChHHhCCC
Confidence 3468999999999999999998899999999999998765432100 000 0000 11111 11 23456788
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
++|+.++...+ +|.......+...+++|++
T Consensus 74 ~lv~~at~d~~-----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 74 WLAIAATDDDA-----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred EEEEECCCCHH-----HhHHHHHHHHHcCcEEEEC
Confidence 98888865432 3444444444445555553
No 319
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.58 E-value=0.071 Score=47.52 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=28.6
Q ss_pred eEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
+|+|+|+|.+|..+|+.|...|. ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999998898 599998764
No 320
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=94.55 E-value=0.081 Score=45.94 Aligned_cols=85 Identities=21% Similarity=0.211 Sum_probs=52.4
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
..|++|++||+= ++++++++..+.+|.++|+++....... ... .....++++++||+|+
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~-------------~~~-----~~~~~~~~l~~aD~vi 67 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEP-------------GDV-----PDEDAEEILPWADVVI 67 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSC-------------T-E-----EGGGHHHHGGG-SEEE
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCC-------------CcC-----CHHHHHHHHccCCEEE
Confidence 578999999961 2477888888999999999864310000 000 2245678899999998
Q ss_pred EeccCChhhhcccC---HHHHhcCCCCcEEEEcCC
Q 017490 255 CCLSLNKQTAGIVN---KSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 255 l~lP~t~~t~~li~---~~~l~~mk~gailIN~sR 286 (370)
+.=- -++| .+.|+..+++..++=.+-
T Consensus 68 iTGs------TlvN~Ti~~iL~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 68 ITGS------TLVNGTIDDILELARNAREVILYGP 96 (147)
T ss_dssp EECH------HCCTTTHHHHHHHTTTSSEEEEESC
T ss_pred EEee------eeecCCHHHHHHhCccCCeEEEEec
Confidence 7621 1343 246666676666665553
No 321
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.53 E-value=0.13 Score=52.20 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=52.6
Q ss_pred cccccCceEEEEec----------CchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccCCC
Q 017490 172 GETLLGKTVFILGF----------GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 240 (370)
Q Consensus 172 ~~~l~g~tvGIiGl----------G~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (370)
+..+.|++|+|+|+ ..-...+++.|+..| .+|.+||+...... .........
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~-----------------~~~~~~~~~ 377 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLP-----------------KKLDGLVTL 377 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchh-----------------hhccCceee
Confidence 46689999999998 446779999999996 99999998743210 000000123
Q ss_pred CCHHHHHhcCCEEEEeccCC
Q 017490 241 EDIFEFASKADVVVCCLSLN 260 (370)
Q Consensus 241 ~~l~ell~~aDiV~l~lP~t 260 (370)
.++++.++.||+|+++.+..
T Consensus 378 ~~~~~~~~~ad~vvi~t~~~ 397 (415)
T PRK11064 378 VSLDEALATADVLVMLVDHS 397 (415)
T ss_pred CCHHHHHhCCCEEEECCCCH
Confidence 67889999999999998743
No 322
>PRK08223 hypothetical protein; Validated
Probab=94.49 E-value=0.08 Score=51.01 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=33.3
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 209 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~ 209 (370)
...|+.++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 456899999999999999999999998888 67777754
No 323
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=94.46 E-value=0.57 Score=46.26 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=64.0
Q ss_pred cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490 174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA 247 (370)
Q Consensus 174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell 247 (370)
.+.|++|++||=+ ++.++++..+..+|++|.+..|..-.. +.+. .+. +.+.....+ ...++++.+
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p--~~~~-~~~------~~~~~~~~g~~~~~~~d~~~a~ 223 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLP--EASL-VEM------CEKFAKESGARITVTDDIDKAV 223 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcC--CHHH-HHH------HHHHHHHcCCeEEEEcCHHHHh
Confidence 4789999999986 678888899999999999887642210 0000 000 000111111 247899999
Q ss_pred hcCCEEEEec----cCC----hh-----hhcccCHHHHhcC-CCCcEEEEcC
Q 017490 248 SKADVVVCCL----SLN----KQ-----TAGIVNKSFLSSM-KKGSLLVNIA 285 (370)
Q Consensus 248 ~~aDiV~l~l----P~t----~~-----t~~li~~~~l~~m-k~gailIN~s 285 (370)
++||+|..-. ... ++ ....++.+.++.. |++++|.-+.
T Consensus 224 ~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 224 KGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred CCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 9999998732 110 01 1234677778875 7888887663
No 324
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.42 E-value=0.075 Score=51.28 Aligned_cols=88 Identities=11% Similarity=0.030 Sum_probs=53.5
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
.|+++.|+|.|.||...++.++.+|++ |.+.|+...+.. ..........-++.-...|+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~------------------~a~~~~~i~~~~~~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD------------------GATGYEVLDPEKDPRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH------------------hhhhccccChhhccCCCCCEEE
Confidence 477899999999999999999999997 556665432210 0000000000001112468888
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
-++..... + ...++.++++..++.++-
T Consensus 206 d~~G~~~~----~-~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 206 DASGDPSL----I-DTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ECCCCHHH----H-HHHHHhhhcCcEEEEEee
Confidence 77653211 1 345677888888887763
No 325
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=94.35 E-value=0.23 Score=49.03 Aligned_cols=103 Identities=14% Similarity=0.121 Sum_probs=65.0
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHh
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFAS 248 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~ 248 (370)
.+.|++|+++|= .++.++++..+..+|++|..+.|..-.. +... .++ +.+.....+ ...++++.++
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~--~~~~-~~~------~~~~~~~~g~~~~~~~d~~eav~ 221 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQL--PEEH-LAI------AEENCEVSGGSVLVTDDVDEAVK 221 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCcccc--CHHH-HHH------HHHHHHhcCCeEEEEcCHHHHhC
Confidence 588999999996 6888888999999999999987642111 0000 000 000000111 2468999999
Q ss_pred cCCEEEEec-----cCC---hh------hhcccCHHHHhcCCCCcEEEEcC
Q 017490 249 KADVVVCCL-----SLN---KQ------TAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 249 ~aDiV~l~l-----P~t---~~------t~~li~~~~l~~mk~gailIN~s 285 (370)
.+|+|..-. ... ++ -..-++++.++.+|++++|.-+.
T Consensus 222 ~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL 272 (338)
T PRK02255 222 DADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL 272 (338)
T ss_pred CCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence 999998832 110 00 02456778888888888777663
No 326
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.35 E-value=0.073 Score=52.62 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=44.3
Q ss_pred ceEEEEecCchhHHHHHHhcc-CCCEEEEEcCCCccccccccccchhhhcccccccc---ccccC--CCCCHHHHHhcCC
Q 017490 178 KTVFILGFGNIGVELAKRLRP-FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDL---VDEKG--CHEDIFEFASKAD 251 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~-~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~l~ell~~aD 251 (370)
.+|||+|+|.||+.+++.+.. -++++.+.................|...... .+. ....+ ...++++++..+|
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~-~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVAD-PEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccC-ccccccccCCceEEcCChhHhhccCC
Confidence 379999999999999998764 5788776543211100000000000000000 000 00011 1246778888999
Q ss_pred EEEEeccCC
Q 017490 252 VVVCCLSLN 260 (370)
Q Consensus 252 iV~l~lP~t 260 (370)
+|+.|.|..
T Consensus 81 VVIdaT~~~ 89 (341)
T PRK04207 81 IVVDATPGG 89 (341)
T ss_pred EEEECCCch
Confidence 999998754
No 327
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.34 E-value=0.1 Score=49.96 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=32.2
Q ss_pred CceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 212 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~ 212 (370)
++++.|+|.|..+++++..|+..|+ +|.+++|+.++
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~ 158 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKT 158 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHH
Confidence 4689999999999999999999998 59999998654
No 328
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=94.34 E-value=0.05 Score=52.93 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=45.6
Q ss_pred ceEEEEecCchhH-HHHHHhccCC--CE-EEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhc-
Q 017490 178 KTVFILGFGNIGV-ELAKRLRPFG--VK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK- 249 (370)
Q Consensus 178 ~tvGIiGlG~IG~-~vA~~l~~~G--~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~- 249 (370)
.++||||+|.+++ ..+..++..+ +. |.++|++..+.. ....+++ .+.+++++++.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~-----------------~~a~~~~~~~~~~~~~~ll~~~ 66 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAE-----------------AFAEEFGIAKAYTDLEELLADP 66 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHH-----------------HHHHHcCCCcccCCHHHHhcCC
Confidence 5899999997775 5777777765 34 556688765421 1222222 46789999985
Q ss_pred -CCEEEEeccCC
Q 017490 250 -ADVVVCCLSLN 260 (370)
Q Consensus 250 -aDiV~l~lP~t 260 (370)
.|+|++++|..
T Consensus 67 ~iD~V~Iatp~~ 78 (342)
T COG0673 67 DIDAVYIATPNA 78 (342)
T ss_pred CCCEEEEcCCCh
Confidence 59999999954
No 329
>PRK04148 hypothetical protein; Provisional
Probab=94.32 E-value=0.059 Score=46.10 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=32.4
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
+++++.+||+| -|..+|..|+..|++|+++|.++..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~a 51 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKA 51 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHH
Confidence 46789999999 9999999999999999999988653
No 330
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.31 E-value=0.067 Score=54.86 Aligned_cols=116 Identities=24% Similarity=0.217 Sum_probs=69.9
Q ss_pred cccCceEEEEecCchhHH-HHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 174 TLLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~-vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
..+++++.|+|+|..|.+ +|+.|+..|++|.++|....+.... +. ...+.-. . ..-.+.+..+|+
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~------l~------~~gi~~~-~-~~~~~~~~~~d~ 69 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQR------LL------ELGAIIF-I-GHDAENIKDADV 69 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHH------HH------HCCCEEe-C-CCCHHHCCCCCE
Confidence 356789999999999999 7999999999999999764321000 00 0000000 0 112344567898
Q ss_pred EEEe--ccC-Chhhh-------cccCHH-HHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490 253 VVCC--LSL-NKQTA-------GIVNKS-FLSS-MKK-GSLLVNIARGGLLDYEAIAHYLECGH 303 (370)
Q Consensus 253 V~l~--lP~-t~~t~-------~li~~~-~l~~-mk~-gailIN~sRg~~vd~~aL~~aL~~g~ 303 (370)
|+.. +|. +|... .+++.- .+.. +++ ..+-|--+.|..-...-+.+.|+...
T Consensus 70 vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 70 VVYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 8775 332 22221 234433 3333 332 35566666799888888888887654
No 331
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.29 E-value=0.093 Score=51.86 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=65.3
Q ss_pred ceEEEEecCchhHHHHHHhccC----------CCEEEE-EcCCCcccc---ccccccchhhhccccccccccccCCCCCH
Q 017490 178 KTVFILGFGNIGVELAKRLRPF----------GVKIIA-TKRSWASHS---QVSCQSSALAVKNGIIDDLVDEKGCHEDI 243 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~----------G~~V~~-~dr~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (370)
.+|||+|+|.||+.+++.+... +++|.+ .|++..-.. .....+..+....+.... ........++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~-~~~~~~~~d~ 81 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD-YPEGGGEISG 81 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc-CccccccCCH
Confidence 3799999999999999988644 567654 454321000 000000000000000000 0000012378
Q ss_pred HHHHh--cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHhCCce
Q 017490 244 FEFAS--KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL-LDYEAIAHYLECGHLG 305 (370)
Q Consensus 244 ~ell~--~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~-vd~~aL~~aL~~g~i~ 305 (370)
++++. +.|+|+.++|....+...--.-....++.|.-+|-..-+.+ ...++|.++.++....
T Consensus 82 ~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 88884 68999999986543211111112444666766665443333 2456788887776654
No 332
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.29 E-value=0.38 Score=46.43 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=72.4
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
|++++|||-=.=-..+++.|...|++|..|.-.... ............++.++++|+|++=
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~i~p 61 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-------------------DGFTGAVKCELLELDLTTLDVVILP 61 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-------------------cccccceeecchhhhhccCCEEEEC
Confidence 678999998887888999999999998776532111 0011011223455568999999999
Q ss_pred ccCChhh---------hc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCC
Q 017490 257 LSLNKQT---------AG-IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAW 313 (370)
Q Consensus 257 lP~t~~t---------~~-li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~ 313 (370)
+|.+... .. -++++.++.|+++++ +-++ ++..++-++.++..+. ..|.++
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~ 121 (287)
T TIGR02853 62 VPGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE 121 (287)
T ss_pred CccccCCceEecccccCCccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence 9965432 11 246889999998665 3343 4455666677777776 454433
No 333
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.28 E-value=0.11 Score=49.41 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=31.9
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA 211 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~ 211 (370)
.|.+|.|+|.|.||...++.++.+|.+ |++.+++..
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD 156 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 688999999999999999999999997 888876544
No 334
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.27 E-value=0.18 Score=46.44 Aligned_cols=98 Identities=28% Similarity=0.353 Sum_probs=58.4
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH-----Hhc
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-----ASK 249 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~ 249 (370)
..|.+|.|+|.|.+|+.+++.++..|.+|++.+++......... + + ....... ...+..+. -..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~----g-~~~~~~~--~~~~~~~~~~~~~~~~ 201 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----L----G-ADHVIDY--KEEDLEEELRLTGGGG 201 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----h----C-CceeccC--CcCCHHHHHHHhcCCC
Confidence 35789999999999999999999999999999876433110000 0 0 0000000 00111111 135
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
.|+++.+++... .-...++.|+++..+++.+...
T Consensus 202 ~d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 202 ADVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred CCEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCC
Confidence 788887765321 1234566778888888877654
No 335
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.25 E-value=0.061 Score=52.01 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=64.1
Q ss_pred EEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEecc
Q 017490 180 VFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLS 258 (370)
Q Consensus 180 vGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 258 (370)
|+|||.|.||..+|..+...|. +|+.+|++..... .... ++...... ...........+. +.++.||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~--dl~~~~~~-~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKAL--DISQAAPI-LGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHH--HHHHhhhh-cCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999998876554 9999998754311 0000 00000000 0000000012344 45899999999874
Q ss_pred C--Chh---------hhcccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH--HhCCceEEE
Q 017490 259 L--NKQ---------TAGIVN--KSFLSSMKKGSLLVNIARGGLLDYEAIAHYL--ECGHLGGLG 308 (370)
Q Consensus 259 ~--t~~---------t~~li~--~~~l~~mk~gailIN~sRg~~vd~~aL~~aL--~~g~i~ga~ 308 (370)
. .+. +..++. .+.+....|.+++|+.+...-+-...+.+.. ...++.|.+
T Consensus 76 ~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 76 IPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 2 111 111110 1123445577888888754433333444432 122466655
No 336
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=94.20 E-value=0.25 Score=48.13 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=62.4
Q ss_pred ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhc
Q 017490 175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK 249 (370)
Q Consensus 175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~ 249 (370)
+.|++|+++|= +++.++++..+..+|++|....+..-.... . + .+......+ ...++++.++.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~--~----~------~~~~~~~~g~~~~~~~d~~~a~~~ 217 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDP--E----I------VEKIAKETGASIEVTHDPKEAVKG 217 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCH--H----H------HHHHHHHcCCeEEEEcCHHHHhCC
Confidence 78999999997 889999999999999999998764321100 0 0 000011111 24689999999
Q ss_pred CCEEEEec----cCC---hh-----hhcccCHHHHhcCCCCcEEEEc
Q 017490 250 ADVVVCCL----SLN---KQ-----TAGIVNKSFLSSMKKGSLLVNI 284 (370)
Q Consensus 250 aDiV~l~l----P~t---~~-----t~~li~~~~l~~mk~gailIN~ 284 (370)
+|+|..-. ... .+ ...-++++.++.+|+++++.-+
T Consensus 218 aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp 264 (304)
T PRK00779 218 ADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC 264 (304)
T ss_pred CCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC
Confidence 99998741 110 01 1234566667667777666554
No 337
>PRK08328 hypothetical protein; Provisional
Probab=94.19 E-value=0.041 Score=51.33 Aligned_cols=44 Identities=30% Similarity=0.442 Sum_probs=36.6
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
|+......|.+++|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus 17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 54444467899999999999999999999999898 688888653
No 338
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.14 E-value=0.064 Score=52.00 Aligned_cols=100 Identities=19% Similarity=0.235 Sum_probs=57.3
Q ss_pred EEEEecCchhHHHHHHhccCC--CEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEEe
Q 017490 180 VFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 180 vGIiGlG~IG~~vA~~l~~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l~ 256 (370)
|+|||.|.+|..+|..+...| .++..+|++........ .++..... .... ......+ .+.++.||+|+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~---~DL~~~~~---~~~~~~i~~~~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDA---LDLSHASA---FLATGTIVRGGD-YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHH---HhHHHhcc---ccCCCeEEECCC-HHHhCCCCEEEEc
Confidence 589999999999999988777 58999998754321100 01100000 0000 0001123 4688999999999
Q ss_pred ccCChh---hhc-cc--CH-------HHHhcCCCCcEEEEcCC
Q 017490 257 LSLNKQ---TAG-IV--NK-------SFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 257 lP~t~~---t~~-li--~~-------~~l~~mk~gailIN~sR 286 (370)
...... +|- ++ |. ..+....|.+++|+.+.
T Consensus 74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 763211 111 11 11 22444568899999984
No 339
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.14 E-value=0.052 Score=53.33 Aligned_cols=92 Identities=16% Similarity=0.245 Sum_probs=56.9
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC---ccccccccccchhhhcccccccc-ccccC-CCCCHHH--HHh
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW---ASHSQVSCQSSALAVKNGIIDDL-VDEKG-CHEDIFE--FAS 248 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l~e--ll~ 248 (370)
.|.+|.|+|.|.||...++.++..|++|++++++. .+.... .++ +.... ...++.+ ...
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~--------------~~~Ga~~v~~~~~~~~~~~~~~ 237 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIV--------------EELGATYVNSSKTPVAEVKLVG 237 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH--------------HHcCCEEecCCccchhhhhhcC
Confidence 58899999999999999999999999999998742 111000 000 00000 0111111 123
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
..|+|+-++.... .+ .+.++.|+++..++.++.
T Consensus 238 ~~d~vid~~g~~~----~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 238 EFDLIIEATGVPP----LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred CCCEEEECcCCHH----HH-HHHHHHccCCcEEEEEec
Confidence 5788888875321 12 346677888888887764
No 340
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.11 E-value=0.28 Score=50.26 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=72.3
Q ss_pred ccCceEEEEec----CchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh
Q 017490 175 LLGKTVFILGF----GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 248 (370)
Q Consensus 175 l~g~tvGIiGl----G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 248 (370)
++-++|.|||. |.+|..+.+.++..|+ +|+.+++..... ... ..+.+++++-.
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i------------------~G~---~~~~sl~~lp~ 63 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI------------------LGV---KAYPSVLEIPD 63 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc------------------CCc---cccCCHHHCCC
Confidence 56679999999 8899999999998887 798888763320 111 14567888877
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEE-EcCCCcc-----cCHHHHHHHHHhCCceEE
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV-NIARGGL-----LDYEAIAHYLECGHLGGL 307 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailI-N~sRg~~-----vd~~aL~~aL~~g~i~ga 307 (370)
..|++++++|. +.+..++.+ +....-.+++| ..+-++. -.+++|.+..+++.++-.
T Consensus 64 ~~Dlavi~vp~-~~~~~~l~e--~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 64 PVDLAVIVVPA-KYVPQVVEE--CGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred CCCEEEEecCH-HHHHHHHHH--HHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 88999999994 344444432 22233344444 3332332 235788888888877643
No 341
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.06 E-value=0.13 Score=50.27 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=55.8
Q ss_pred cCceEEEEecCchhHHHHHHhcc-CC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCC
Q 017490 176 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KAD 251 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~-~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aD 251 (370)
.|.+|.|+|.|.||...++.++. +| .+|++++++..+.. .+...+.....+++.. ..|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~------------------~a~~~~~~~~~~~~~~~~g~d 224 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLD------------------LFSFADETYLIDDIPEDLAVD 224 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHH------------------HHhhcCceeehhhhhhccCCc
Confidence 48899999999999999888875 54 68999998754421 1111110011112222 368
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
+|+-++... .+...+ ...++.+++|..++.++-
T Consensus 225 ~viD~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 225 HAFECVGGR-GSQSAI-NQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred EEEECCCCC-ccHHHH-HHHHHhCcCCcEEEEEee
Confidence 888877631 011112 246778899988888764
No 342
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.91 E-value=0.07 Score=54.24 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=68.3
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc-CCE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK-ADV 252 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDi 252 (370)
++.|+++.|+|.|.+|.++|+.|+..|++|.+.|+........... +. ......... ....+++.. .|+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~---l~------~~g~~~~~~-~~~~~~~~~~~d~ 71 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQE---LL------EEGIKVICG-SHPLELLDEDFDL 71 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHH---HH------hcCCEEEeC-CCCHHHhcCcCCE
Confidence 3678999999999999999999999999999999764321100000 00 000000000 122334444 898
Q ss_pred EEEec--cCC-hh-----h--hcccCHHHH-hcC-CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490 253 VVCCL--SLN-KQ-----T--AGIVNKSFL-SSM-KKGSLLVNIARGGLLDYEAIAHYLECG 302 (370)
Q Consensus 253 V~l~l--P~t-~~-----t--~~li~~~~l-~~m-k~gailIN~sRg~~vd~~aL~~aL~~g 302 (370)
|+..- |.+ +. . ..++....| ..+ +...+-|--+.|..-...-+...|+..
T Consensus 72 vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~ 133 (447)
T PRK02472 72 MVKNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG 133 (447)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence 87753 222 21 0 112332222 233 334555666678888888888888753
No 343
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.83 E-value=0.063 Score=54.64 Aligned_cols=119 Identities=24% Similarity=0.266 Sum_probs=68.6
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
.+.+|++.|+|.|.+|.++|+.|...|++|.++|+........ .. ..+. ............++....+|+|
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~-~~-~~l~-------~~~~~~~~~~~~~~~~~~~d~v 72 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKE-AL-EELG-------ELGIELVLGEYPEEFLEGVDLV 72 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHH-HH-HHHH-------hcCCEEEeCCcchhHhhcCCEE
Confidence 4679999999999999999999999999999999864221100 00 0000 0000000112223556789999
Q ss_pred EEeccCChhhh--------cc--cC-HHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHh
Q 017490 254 VCCLSLNKQTA--------GI--VN-KSFLSS-MKKGSLLVNIARGGLLDYEAIAHYLEC 301 (370)
Q Consensus 254 ~l~lP~t~~t~--------~l--i~-~~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~ 301 (370)
+.+.-..+... ++ +. .+.+.. .+...+-|--+.|..-..+-|...|+.
T Consensus 73 v~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 73 VVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred EECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 88643322221 11 11 112222 232344455567888888888888875
No 344
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=93.77 E-value=0.31 Score=46.19 Aligned_cols=137 Identities=15% Similarity=0.205 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccC----CC-------EEEEEcC
Q 017490 140 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR 208 (370)
Q Consensus 140 vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~----G~-------~V~~~dr 208 (370)
+|--+++-+++.+|-. ++.|++.++.|+|.|..|-.+|+.+... |. +++.+|+
T Consensus 4 TaaV~lAgll~Al~~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~ 67 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT----------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDS 67 (255)
T ss_dssp HHHHHHHHHHHHHHHH----------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEET
T ss_pred hHHHHHHHHHHHHHHh----------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEec
Confidence 5567778888888753 5679999999999999999999998776 87 4899987
Q ss_pred CCccccccccccchhhhccccccccccccCC---CCCHHHHHhcC--CEEEEeccCChhhhcccCHHHHhcCCC---CcE
Q 017490 209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGC---HEDIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSL 280 (370)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~a--DiV~l~lP~t~~t~~li~~~~l~~mk~---gai 280 (370)
..--...-. ++.... ..+...... ..+|.|+++.+ |+++-+- ...++++++.++.|.+ ..+
T Consensus 68 ~Gll~~~r~----~l~~~~---~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPI 136 (255)
T PF03949_consen 68 KGLLTDDRE----DLNPHK---KPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPI 136 (255)
T ss_dssp TEEEBTTTS----SHSHHH---HHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEE
T ss_pred cceEeccCc----cCChhh---hhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCE
Confidence 632100000 000000 111222112 24899999988 9887652 2567899999999987 899
Q ss_pred EEEcCCCcccCHHHHHHHHHhCC
Q 017490 281 LVNIARGGLLDYEAIAHYLECGH 303 (370)
Q Consensus 281 lIN~sRg~~vd~~aL~~aL~~g~ 303 (370)
+.=.|+...--|-.-.++.+-+.
T Consensus 137 IF~LSNPt~~aE~~peda~~~t~ 159 (255)
T PF03949_consen 137 IFPLSNPTPKAECTPEDAYEWTD 159 (255)
T ss_dssp EEE-SSSCGGSSS-HHHHHHTTT
T ss_pred EEECCCCCCcccCCHHHHHhhCC
Confidence 99999987744444445555443
No 345
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.73 E-value=0.095 Score=55.98 Aligned_cols=93 Identities=17% Similarity=0.160 Sum_probs=57.9
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHH----HHhcCCE
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE----FASKADV 252 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aDi 252 (370)
...|-|+|+|++|+.+|+.|.+.|.++++.|.+++........ +...-++...+.+- -++++|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------------CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 3578899999999999999999999999999876542111000 00001122233322 2458999
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEE
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 283 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN 283 (370)
|+++++..+.+..+. ...+.+.|...++-
T Consensus 468 vvv~~~d~~~n~~i~--~~ar~~~p~~~iia 496 (621)
T PRK03562 468 LINAIDDPQTSLQLV--ELVKEHFPHLQIIA 496 (621)
T ss_pred EEEEeCCHHHHHHHH--HHHHHhCCCCeEEE
Confidence 999998766554442 23444455555543
No 346
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.70 E-value=0.19 Score=50.25 Aligned_cols=89 Identities=22% Similarity=0.283 Sum_probs=58.3
Q ss_pred ccCceEEEEecC----------chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHH
Q 017490 175 LLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF 244 (370)
Q Consensus 175 l~g~tvGIiGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (370)
|.||||||+|+- .-...++++|+..|.+|.+|||-...... .......-..+++
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~----------------~~~~~~~~~~~~~ 371 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAF----------------RNFPDVELESDAE 371 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHH----------------hcCCCceEeCCHH
Confidence 899999999984 34677899999999999999986433110 0000011236899
Q ss_pred HHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEE
Q 017490 245 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 283 (370)
Q Consensus 245 ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN 283 (370)
++++.||+++++... ++.+.+ +-+.+ .|| +.++++
T Consensus 372 ~~~~~aDaivi~tew-~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 372 EALKGADAIVINTEW-DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhhCCEEEEeccH-HHHhcc-Chhhh-hcc-CCEEEe
Confidence 999999999998653 333333 33333 565 344444
No 347
>PRK13529 malate dehydrogenase; Provisional
Probab=93.69 E-value=1.5 Score=46.06 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=111.8
Q ss_pred cCCCCeEEEEeCcccCc-cchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccc
Q 017490 97 RANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETL 175 (370)
Q Consensus 97 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l 175 (370)
..|+. +|+.--.+..+ +.+..--+..|.+.|+- -..+|-.+++.+++.+|-. +..|
T Consensus 237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDD------iQGTaaV~LAgll~A~r~~----------------g~~l 293 (563)
T PRK13529 237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDD------IQGTGAVTLAGLLAALKIT----------------GEPL 293 (563)
T ss_pred hCCCe-EEehhhcCCchHHHHHHHhccCCCeeccc------cchHHHHHHHHHHHHHHHh----------------CCCh
Confidence 35775 66666555443 44444445578998862 2457778889999988842 5678
Q ss_pred cCceEEEEecCchhHHHHHHhcc----CCC-------EEEEEcCCCcccc--ccccc-cchhhhccccccccccccCCCC
Q 017490 176 LGKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSWASHS--QVSCQ-SSALAVKNGIIDDLVDEKGCHE 241 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~----~G~-------~V~~~dr~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 241 (370)
.+.++.|+|.|..|..+|+.+.. .|. +++.+|+..--.. ..... -..|.-....... ........
T Consensus 294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~-~~~~~~~~ 372 (563)
T PRK13529 294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELAD-WDTEGDVI 372 (563)
T ss_pred hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccc-cccccCCC
Confidence 99999999999999999998875 587 7999997642100 00000 0001000000000 00001225
Q ss_pred CHHHHHhcC--CEEEEeccCChhhhcccCHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH
Q 017490 242 DIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSLLVNIARGGLLDYEAIAHYLE 300 (370)
Q Consensus 242 ~l~ell~~a--DiV~l~lP~t~~t~~li~~~~l~~mk~---gailIN~sRg~~vd~~aL~~aL~ 300 (370)
+|.++++.+ |+++-+- ...+.++++.++.|.+ ..++.=.|+...--|-.-.+|.+
T Consensus 373 ~L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~ 432 (563)
T PRK13529 373 SLLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIA 432 (563)
T ss_pred CHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHH
Confidence 899999987 9887641 2347899999999977 89999999887744544444554
No 348
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.67 E-value=0.13 Score=52.30 Aligned_cols=38 Identities=37% Similarity=0.335 Sum_probs=34.2
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
+..+++.|+|+|.+|+.+++.|...|.+|+++|++++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~ 266 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPER 266 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 45789999999999999999999999999999987653
No 349
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=93.58 E-value=0.2 Score=50.93 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=62.1
Q ss_pred cccCceEEEEec---CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH
Q 017490 174 TLLGKTVFILGF---GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE 245 (370)
Q Consensus 174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e 245 (370)
.+.|++|++||- +++..+++..+..+ |++|....+..-.. +.. . .+.+...+ ...++++
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~--~~~----------~-~~~~~~~G~~v~~~~d~~e 304 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEM--PAY----------I-VEQISRNGHVIEQTDDLAA 304 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCcccc--CHH----------H-HHHHHhcCCeEEEEcCHHH
Confidence 488999999998 48889999988776 99999887642210 000 0 01111111 2478999
Q ss_pred HHhcCCEEEEeccCChh----------hhcccCHHHHhc-CCCCcEEEEc
Q 017490 246 FASKADVVVCCLSLNKQ----------TAGIVNKSFLSS-MKKGSLLVNI 284 (370)
Q Consensus 246 ll~~aDiV~l~lP~t~~----------t~~li~~~~l~~-mk~gailIN~ 284 (370)
.++.+|+|....--.+. ....++++.++. .|+++++.-+
T Consensus 305 av~~ADVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429)
T PRK11891 305 GLRGADVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429)
T ss_pred HhCCCCEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC
Confidence 99999999884421000 123456677776 6777776654
No 350
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.57 E-value=0.055 Score=45.80 Aligned_cols=34 Identities=41% Similarity=0.598 Sum_probs=29.9
Q ss_pred CceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
.++|.|+|+|.+|..+|+.|...|+ ++..+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 5799999999999999999998898 799999754
No 351
>PRK14851 hypothetical protein; Provisional
Probab=93.52 E-value=0.2 Score=54.02 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=92.7
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcccccccc-c----cch------------hhhcccccc-c
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSC-Q----SSA------------LAVKNGIID-D 232 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~-~----~~~------------~~~~~~~~~-~ 232 (370)
...|++++|+|+|+|.+|..+|..|...|. ++..+|...-.. .... + ..+ +...+..+. +
T Consensus 38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~-sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~ 116 (679)
T PRK14851 38 QERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEP-VNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEIT 116 (679)
T ss_pred HHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecc-cccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEE
Confidence 457899999999999999999999998887 677776432110 0000 0 000 000000000 0
Q ss_pred cccccCCCCCHHHHHhcCCEEEEeccC-ChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEec
Q 017490 233 LVDEKGCHEDIFEFASKADVVVCCLSL-NKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311 (370)
Q Consensus 233 ~~~~~~~~~~l~ell~~aDiV~l~lP~-t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV 311 (370)
........+++++++..+|+|+-|+-. +-+++.+++.... +.+.-+|..+-.+.- ..+....-+.+. .-|.
T Consensus 117 ~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---~~~iP~i~~g~~G~~---g~~~~~~p~~~~--~~~~ 188 (679)
T PRK14851 117 PFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---EKGIPVITAGPLGYS---SAMLVFTPQGMG--FDDY 188 (679)
T ss_pred EEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH---HCCCCEEEeeccccc---ceEEEEcCCCCC--HhHh
Confidence 000011224567788899998877743 1234555554322 234445554411100 000000000000 0112
Q ss_pred CCCC-----------------CCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCC
Q 017490 312 AWTE-----------------PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 361 (370)
Q Consensus 312 ~~~E-----------------Pl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~ 361 (370)
|+-+ |-+..+...+..+|-++-+-+-.+.-+....+........+++.|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (679)
T PRK14851 189 FNIGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGK 255 (679)
T ss_pred ccCCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcC
Confidence 2221 3233344557777878888777777777777777777777766554
No 352
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=93.51 E-value=0.14 Score=40.93 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=41.9
Q ss_pred CceEEEEecCchhHHHHHHh-ccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc--CCE
Q 017490 177 GKTVFILGFGNIGVELAKRL-RPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADV 252 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l-~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi 252 (370)
..++.|+|+|+.|++++... ...|++ +.++|.++...- +.....--+.+++++.+. .|+
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G-----------------~~i~gipV~~~~~~l~~~~~i~i 65 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG-----------------KEIGGIPVYGSMDELEEFIEIDI 65 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT-----------------SEETTEEEESSHHHHHHHCTTSE
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC-----------------cEECCEEeeccHHHhhhhhCCCE
Confidence 35799999999999997644 345665 466776654310 001100023467777666 999
Q ss_pred EEEeccCC
Q 017490 253 VVCCLSLN 260 (370)
Q Consensus 253 V~l~lP~t 260 (370)
-++++|..
T Consensus 66 aii~VP~~ 73 (96)
T PF02629_consen 66 AIITVPAE 73 (96)
T ss_dssp EEEES-HH
T ss_pred EEEEcCHH
Confidence 99999943
No 353
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=93.43 E-value=0.4 Score=46.84 Aligned_cols=65 Identities=20% Similarity=0.071 Sum_probs=47.2
Q ss_pred ccCceEEEEec---CchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 175 LLGKTVFILGF---GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 175 l~g~tvGIiGl---G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+.|.+|+++|= +++.++++..+..+|+ +|....+..-. +.. ..........++++.++.+
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~---p~~-------------~~~~~~~~~~d~~ea~~~a 218 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLL---PDK-------------VGNDSIKKFTELKPSLLNS 218 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccC---cCc-------------cccceEEEEcCHHHHhCCC
Confidence 77999999997 6999999999999999 89888764211 000 0001111246899999999
Q ss_pred CEEEE
Q 017490 251 DVVVC 255 (370)
Q Consensus 251 DiV~l 255 (370)
|+|..
T Consensus 219 Dvvy~ 223 (310)
T PRK13814 219 DVIVT 223 (310)
T ss_pred CEEEE
Confidence 99976
No 354
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.35 E-value=0.11 Score=39.74 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=30.7
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
++.|||.|.+|-++|..++.+|.+|..+++....
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5789999999999999999999999999887543
No 355
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=93.34 E-value=0.83 Score=47.04 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=36.7
Q ss_pred CcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 171 ~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
......|++|+|||.|.-|...|..|...|+.|++|++....
T Consensus 117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~ 158 (457)
T COG0493 117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALD 158 (457)
T ss_pred CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCC
Confidence 344677899999999999999999999999999999986543
No 356
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.33 E-value=0.092 Score=54.41 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=33.3
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
+.+++|+|+|+|..|.++|+.|+..|++|.++|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 568899999999999999999999999999999754
No 357
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.29 E-value=0.08 Score=47.65 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=44.0
Q ss_pred eEEEEecCchhHHHHHH--hccCCCEE-EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCEE
Q 017490 179 TVFILGFGNIGVELAKR--LRPFGVKI-IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVV 253 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~--l~~~G~~V-~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV 253 (370)
++.|||.|++|++++.. .+..||++ -+||..++.--. ...+ + ......++++.++ +.|+.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~-------------~~~~-v-~V~~~d~le~~v~~~dv~ia 150 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT-------------KIGD-V-PVYDLDDLEKFVKKNDVEIA 150 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCc-------------ccCC-e-eeechHHHHHHHHhcCccEE
Confidence 68899999999999875 34689985 578876542100 0000 0 0012356777777 68899
Q ss_pred EEeccCC
Q 017490 254 VCCLSLN 260 (370)
Q Consensus 254 ~l~lP~t 260 (370)
++|+|..
T Consensus 151 iLtVPa~ 157 (211)
T COG2344 151 ILTVPAE 157 (211)
T ss_pred EEEccHH
Confidence 9999953
No 358
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.23 E-value=0.24 Score=49.02 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=56.3
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCC---CCHHHHHhcCCE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEFASKADV 252 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aDi 252 (370)
.|++|.|.|.|.+|...++.++.+|.+|++.+.+..+....... -.++..... ..+.+.....|+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~------------~Ga~~vi~~~~~~~~~~~~~~~D~ 250 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR------------LGADSFLVSTDPEKMKAAIGTMDY 250 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh------------CCCcEEEcCCCHHHHHhhcCCCCE
Confidence 58899999999999999999999999998877654321000000 000000001 122233334688
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
|+-++..... + ...++.+++|..++.++.
T Consensus 251 vid~~g~~~~----~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 251 IIDTVSAVHA----L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred EEECCCCHHH----H-HHHHHHhcCCcEEEEeCC
Confidence 8877542111 1 235677888888887764
No 359
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.22 E-value=0.098 Score=53.55 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=67.9
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEE
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVV 253 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV 253 (370)
++.|++|.|+|+|..|.+.|+.|+..|++|.++|....... . +. ...+ +.... + .+-+.++|+|
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~--~-----l~------~~g~-~~~~~-~-~~~~~~~d~v 69 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRA--K-----AA------AAGI-TTADL-R-TADWSGFAAL 69 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHH--H-----HH------hcCc-cccCC-C-hhHHcCCCEE
Confidence 46789999999999999999999999999999996533210 0 00 0000 01111 1 1234678988
Q ss_pred EEe--ccCC-h----hh---hc----ccCH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490 254 VCC--LSLN-K----QT---AG----IVNK-SFLSS-M-----KKGSLLVNIARGGLLDYEAIAHYLECG 302 (370)
Q Consensus 254 ~l~--lP~t-~----~t---~~----li~~-~~l~~-m-----k~gailIN~sRg~~vd~~aL~~aL~~g 302 (370)
+.. +|.+ + .. +. ++.+ +.+.+ + +...+-|.-+.|..-..+-|...|+..
T Consensus 70 v~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~ 139 (460)
T PRK01390 70 VLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA 139 (460)
T ss_pred EECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence 753 2321 1 11 11 1332 22222 2 334566666789998888888888863
No 360
>PRK07877 hypothetical protein; Provisional
Probab=93.22 E-value=0.25 Score=53.54 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=61.1
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhc-----------------cccc-c
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVK-----------------NGII-D 231 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~-----------------~~~~-~ 231 (370)
...|++++|+|+|+| +|..+|..|...|. ++..+|...-.. ..... +-|... +..+ .
T Consensus 102 Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~-sNLnR-q~~~~~diG~~Kv~~a~~~l~~inp~i~v 178 (722)
T PRK07877 102 QERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLEL-SNLNR-VPAGVFDLGVNKAVVAARRIAELDPYLPV 178 (722)
T ss_pred HHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcc-ccccc-ccCChhhcccHHHHHHHHHHHHHCCCCEE
Confidence 356899999999999 99999999998883 788877543211 00000 000000 0000 0
Q ss_pred ccccccCCCCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhc
Q 017490 232 DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 274 (370)
Q Consensus 232 ~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~ 274 (370)
+...+....+++++++..+|+|+-|+- +-+++.+++....+.
T Consensus 179 ~~~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~ 220 (722)
T PRK07877 179 EVFTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR 220 (722)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence 000111123468889999999988876 568888888766554
No 361
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.22 E-value=0.18 Score=56.65 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=65.9
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcccc---ccccccc-----hh-------hh-cccccccccc--
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS---QVSCQSS-----AL-------AV-KNGIIDDLVD-- 235 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~---~~~~~~~-----~~-------~~-~~~~~~~~~~-- 235 (370)
.+.-.++.|+|.|++|+..++.+..+|++ . .++..-+.. .+..... .| .+ ..+.+...++
T Consensus 200 gv~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~ 277 (1042)
T PLN02819 200 GICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKA 277 (1042)
T ss_pred CCCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchh
Confidence 34457899999999999999999999887 2 222110000 0000000 00 00 0000000000
Q ss_pred ccC----CCC-C-HHHHHhcCCEEEEeccCChhhhcccCHH-HHhcCCCCc----EEEEcC
Q 017490 236 EKG----CHE-D-IFEFASKADVVVCCLSLNKQTAGIVNKS-FLSSMKKGS----LLVNIA 285 (370)
Q Consensus 236 ~~~----~~~-~-l~ell~~aDiV~l~lP~t~~t~~li~~~-~l~~mk~ga----ilIN~s 285 (370)
++. .+. . +++.++.+|+|+.|+...+.+..++.++ ..+.||+|. +++|+|
T Consensus 278 ~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 278 DYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 000 011 1 4578899999999998888788899988 777899998 888876
No 362
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=93.17 E-value=0.16 Score=50.29 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=50.0
Q ss_pred cCceEEEEec-CchhHHHHHHhccCCC---EEEEE--cCCCccccccccccchhhhccccccccccccC-CCCCHHHHHh
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRPFGV---KIIAT--KRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFAS 248 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~---~V~~~--dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~ 248 (370)
...+|+|+|. |.+|+++.+.|...++ ++..+ .++..+.. .. .. .... ...+. +.+.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~---------~~------~~-~~~~v~~~~~-~~~~ 68 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKV---------TF------EG-RDYTVEELTE-DSFD 68 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCee---------ee------cC-ceeEEEeCCH-HHHc
Confidence 3568999995 9999999999987555 33332 22222110 00 00 0000 11122 3457
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhc-CCCCcEEEEcC
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIA 285 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~-mk~gailIN~s 285 (370)
.+|+|++++|.. ....+ ... .+.|+.+||.|
T Consensus 69 ~~D~vf~a~p~~-~s~~~-----~~~~~~~g~~VIDlS 100 (344)
T PLN02383 69 GVDIALFSAGGS-ISKKF-----GPIAVDKGAVVVDNS 100 (344)
T ss_pred CCCEEEECCCcH-HHHHH-----HHHHHhCCCEEEECC
Confidence 899999999854 22222 222 24688888888
No 363
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.16 E-value=0.26 Score=48.02 Aligned_cols=76 Identities=18% Similarity=0.350 Sum_probs=49.7
Q ss_pred eEEEEec-CchhHHHHHHhccC-CCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490 179 TVFILGF-GNIGVELAKRLRPF-GVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 179 tvGIiGl-G~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
+|+|+|. |..|.++.++|... .+++......... ...+.+++++++|+++++
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~--------------------------~~~~~~~~~~~~D~vFla 56 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK--------------------------DAAERAKLLNAADVAILC 56 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc--------------------------CcCCHhHhhcCCCEEEEC
Confidence 7999995 99999999999865 3455554321100 112455677899999999
Q ss_pred ccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 257 lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
+|.. ....+.. .+ .+.|..+||.|
T Consensus 57 lp~~-~s~~~~~--~~--~~~g~~VIDlS 80 (310)
T TIGR01851 57 LPDD-AAREAVS--LV--DNPNTCIIDAS 80 (310)
T ss_pred CCHH-HHHHHHH--HH--HhCCCEEEECC
Confidence 9954 2332221 11 24688889888
No 364
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.11 E-value=1.3 Score=46.60 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=93.7
Q ss_pred cCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhcc--
Q 017490 121 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP-- 198 (370)
Q Consensus 121 ~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~-- 198 (370)
+..|.+.|+- -..+|-.+++.+++.+|-. ++.|...++.|+|.|..|..+|+.+..
T Consensus 287 r~~i~~FnDD------iQGTaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAgigia~ll~~~~ 344 (581)
T PLN03129 287 RTTHLCFNDD------IQGTAAVALAGLLAALRAT----------------GGDLADQRILFAGAGEAGTGIAELIALAM 344 (581)
T ss_pred ccCCCEeccc------cchHHHHHHHHHHHHHHHh----------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence 4588888862 2457778889999988842 567999999999999999999998876
Q ss_pred ---CCC-------EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhc--CCEEEEeccCChhhhcc
Q 017490 199 ---FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASK--ADVVVCCLSLNKQTAGI 266 (370)
Q Consensus 199 ---~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV~l~lP~t~~t~~l 266 (370)
.|. +++.+|+..--...-.+ .+..+. ..++.......+|.|+++. .|+++-+- ...++
T Consensus 345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~---~l~~~k---~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~ 414 (581)
T PLN03129 345 SRQTGISEEEARKRIWLVDSKGLVTKSRKD---SLQPFK---KPFAHDHEPGASLLEAVKAIKPTVLIGLS----GVGGT 414 (581)
T ss_pred HhhcCCChhhhcCcEEEEcCCCeEeCCCCc---cChHHH---HHHHhhcccCCCHHHHHhccCCCEEEEec----CCCCC
Confidence 476 78999876421100000 000000 0111111134689999998 89887652 12378
Q ss_pred cCHHHHhcCC---CCcEEEEcCCCcc
Q 017490 267 VNKSFLSSMK---KGSLLVNIARGGL 289 (370)
Q Consensus 267 i~~~~l~~mk---~gailIN~sRg~~ 289 (370)
++++.++.|. +..++.=.|+...
T Consensus 415 Ft~evi~~Ma~~~~rPIIFaLSNPt~ 440 (581)
T PLN03129 415 FTKEVLEAMASLNERPIIFALSNPTS 440 (581)
T ss_pred CCHHHHHHHHhcCCCCEEEECCCCCC
Confidence 9999999995 8899999888753
No 365
>PRK10206 putative oxidoreductase; Provisional
Probab=93.07 E-value=0.12 Score=50.99 Aligned_cols=64 Identities=14% Similarity=0.188 Sum_probs=41.2
Q ss_pred eEEEEecCchhHH-HHHHh-cc-CCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--c
Q 017490 179 TVFILGFGNIGVE-LAKRL-RP-FGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--K 249 (370)
Q Consensus 179 tvGIiGlG~IG~~-vA~~l-~~-~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~ 249 (370)
++||||+|.|++. .+..+ .. -+++|. ++|++.+.. +....++ .+.+++++++ +
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~------------------~~~~~~~~~~~~~~~~ell~~~~ 64 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE------------------EQAPIYSHIHFTSDLDEVLNDPD 64 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH------------------HHHHhcCCCcccCCHHHHhcCCC
Confidence 7999999998763 34434 32 367775 577764321 0111111 3578999996 5
Q ss_pred CCEEEEeccCC
Q 017490 250 ADVVVCCLSLN 260 (370)
Q Consensus 250 aDiV~l~lP~t 260 (370)
.|+|++++|..
T Consensus 65 iD~V~I~tp~~ 75 (344)
T PRK10206 65 VKLVVVCTHAD 75 (344)
T ss_pred CCEEEEeCCch
Confidence 79999999954
No 366
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.07 E-value=0.95 Score=44.10 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=83.5
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 257 (370)
++|.|+|.|.||..++.+|...|..|...-|......... ..+..... ..............+.+..+|+|++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~---~GL~i~~~--~~~~~~~~~~~~~~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKK---KGLRIEDE--GGNFTTPVVAATDAEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHh---CCeEEecC--CCccccccccccChhhcCCCCEEEEEe
Confidence 4799999999999999999999988888777653100000 01111000 000000011123345566899999997
Q ss_pred cCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCC-cccCCCceEEccCCC
Q 017490 258 SLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND-PILKFKNVLITPHVG 336 (370)
Q Consensus 258 P~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~-pL~~~~nvilTPHia 336 (370)
-.. ++...+ +...+..++.+.++-.-.| +-.++.+-+.+...++. .|+..+...--.+.+ .......+.+.+..+
T Consensus 76 Ka~-q~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~ 151 (307)
T COG1893 76 KAY-QLEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVL-GGVTTHGAVREGPGHVVHTGLGDTVIGELRG 151 (307)
T ss_pred ccc-cHHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEE-EEEeeeeeEecCCceEEEecCCcEEEccCCC
Confidence 643 344333 3455667788777755444 34455566666655454 233333221111122 233456777777766
Q ss_pred Ccc
Q 017490 337 GVT 339 (370)
Q Consensus 337 ~~t 339 (370)
+..
T Consensus 152 ~~~ 154 (307)
T COG1893 152 GRD 154 (307)
T ss_pred Cch
Confidence 555
No 367
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=93.04 E-value=0.19 Score=45.24 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=49.1
Q ss_pred ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490 178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
++|+|||. |.+|..+++.++..|++|.++-|++.+...-.. .. -........+++.+.+..-|+|+.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~----~~-------i~q~Difd~~~~a~~l~g~DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQG----VT-------ILQKDIFDLTSLASDLAGHDAVISA 69 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccccc----ce-------eecccccChhhhHhhhcCCceEEEe
Confidence 47999996 999999999999999999999998765311000 00 0001111345566788899999988
Q ss_pred ccC
Q 017490 257 LSL 259 (370)
Q Consensus 257 lP~ 259 (370)
.-.
T Consensus 70 ~~~ 72 (211)
T COG2910 70 FGA 72 (211)
T ss_pred ccC
Confidence 654
No 368
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.03 E-value=0.19 Score=49.08 Aligned_cols=102 Identities=18% Similarity=0.108 Sum_probs=58.4
Q ss_pred eEEEEec-CchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490 179 TVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 179 tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
+|+|||. |.||..+|..+...|. ++..+|... ..-...+. . +..............++.+.++.||+|++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~DL----~--~~~~~~~i~~~~~~~~~~~~~~daDivvi 73 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAADL----S--HIPTAASVKGFSGEEGLENALKGADVVVI 73 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEchh----h--cCCcCceEEEecCCCchHHHcCCCCEEEE
Confidence 5899999 9999999998875554 799999865 21111111 0 00000000000001235678999999999
Q ss_pred eccCC--h-hhh-ccc--CHH-------HHhcCCCCcEEEEcCCC
Q 017490 256 CLSLN--K-QTA-GIV--NKS-------FLSSMKKGSLLVNIARG 287 (370)
Q Consensus 256 ~lP~t--~-~t~-~li--~~~-------~l~~mk~gailIN~sRg 287 (370)
+.-.. + .+| .++ |.+ .+..-.|.+++|+++..
T Consensus 74 taG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 74 PAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred eCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 86532 1 122 122 221 34445789999999654
No 369
>PRK06128 oxidoreductase; Provisional
Probab=93.02 E-value=0.23 Score=47.63 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=31.8
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCC
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS 209 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~ 209 (370)
.+.||++.|.|. |.||+.+|+.|...|++|++..+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999999996 999999999999999999877654
No 370
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.96 E-value=0.14 Score=50.67 Aligned_cols=93 Identities=24% Similarity=0.290 Sum_probs=58.3
Q ss_pred eEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccC-CCC-CH----HHHH--hc
Q 017490 179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHE-DI----FEFA--SK 249 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~l----~ell--~~ 249 (370)
+|.|+|.|.||...+..++.+|. +|++.|+++.+....... ...+... ... +. .++. ..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~------------~g~~~~~~~~~~~~~~~~~~~t~g~g 238 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA------------GGADVVVNPSEDDAGAEILELTGGRG 238 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh------------CCCeEeecCccccHHHHHHHHhCCCC
Confidence 99999999999999999999997 688888876552111000 0000000 011 11 1222 24
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+|+++-|.. ++.+ + ...++..++|..++.++-.+
T Consensus 239 ~D~vie~~G-~~~~---~-~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 239 ADVVIEAVG-SPPA---L-DQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CCEEEECCC-CHHH---H-HHHHHHhcCCCEEEEEeccC
Confidence 899999987 2221 1 35677789998888887643
No 371
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.95 E-value=0.16 Score=49.51 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=56.4
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCC--CCC-HHHHHhcCCE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC--HED-IFEFASKADV 252 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-l~ell~~aDi 252 (370)
.|.+|.|.|.|.+|...++.++..|++|++.+++..+. +.+.+.+. .-+ .++.-...|+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~------------------~~a~~~Ga~~vi~~~~~~~~~~d~ 226 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAAR------------------RLALALGAASAGGAYDTPPEPLDA 226 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHH------------------HHHHHhCCceeccccccCcccceE
Confidence 48899999999999999999999999999988775442 11112210 000 0000123576
Q ss_pred EEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 253 VVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 253 V~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
++.+.... . .+ ...++.+++|..++.++.
T Consensus 227 ~i~~~~~~-~---~~-~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAPAG-G---LV-PPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCCcH-H---HH-HHHHHhhCCCcEEEEEec
Confidence 66654432 2 12 356778899998888774
No 372
>PLN02342 ornithine carbamoyltransferase
Probab=92.89 E-value=0.6 Score=46.31 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=62.8
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCC
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKAD 251 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aD 251 (370)
.+.|++|+++|= .++.++++..+..+|++|...-|..-.. +... .+. +.+.. .......++++.++.+|
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~--~~~~-~~~------a~~~g~~~~~~~~d~~eav~~aD 261 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEP--DAKT-VEK------ARAAGISKIEITNDPAEAVKGAD 261 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCccccc--CHHH-HHH------HHHhCCCcEEEEcCHHHHhCCCC
Confidence 378999999996 4678888888899999999887643211 0000 000 00000 01112468999999999
Q ss_pred EEEEec----cCChh--------hhcccCHHHHhcCCCCcEEEEc
Q 017490 252 VVVCCL----SLNKQ--------TAGIVNKSFLSSMKKGSLLVNI 284 (370)
Q Consensus 252 iV~l~l----P~t~~--------t~~li~~~~l~~mk~gailIN~ 284 (370)
+|..-. -..+. ..+.++++.++.+|+++++.-+
T Consensus 262 Vvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348)
T PLN02342 262 VVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348)
T ss_pred EEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC
Confidence 998752 11110 1245677777777777777655
No 373
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.85 E-value=0.28 Score=49.96 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=61.3
Q ss_pred ceEEEEecCchhHHHHHHhccC----------CCEEE-EEcCCCccccccccccchhhhccccccccccccCCCCCHHHH
Q 017490 178 KTVFILGFGNIGVELAKRLRPF----------GVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF 246 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~----------G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el 246 (370)
.+|||+|+|.||+.+++.+... +++|. ++|++..+... . .. .......+++++
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~-~--------------~~-~~~~~~~d~~~l 67 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRG-V--------------DL-PGILLTTDPEEL 67 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccC-C--------------CC-cccceeCCHHHH
Confidence 4799999999999998877432 45544 45665433100 0 00 000124678898
Q ss_pred Hh--cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHhCCce
Q 017490 247 AS--KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL-DYEAIAHYLECGHLG 305 (370)
Q Consensus 247 l~--~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v-d~~aL~~aL~~g~i~ 305 (370)
+. +.|+|+.+++.......+ ..+.|+.|.-+|...-+... .-++|.++.++....
T Consensus 68 l~d~~iDvVve~tg~~~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 68 VNDPDIDIVVELMGGIEPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hhCCCCCEEEECCCCchHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 85 579999988653221111 22445666555543222222 236677777776654
No 374
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.83 E-value=0.15 Score=47.27 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=34.2
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999995 99999999999999999999998743
No 375
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=92.79 E-value=0.36 Score=47.60 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=60.9
Q ss_pred cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490 174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA 247 (370)
Q Consensus 174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell 247 (370)
.+.|++|++||-+ ++.++++..+..+|++|...-|..-.. +.. +. +.+.+.....+ ...++++.+
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~--~~~----~~---~~~~~~~~~~g~~~~~~~d~~ea~ 222 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWP--EEE----LV---ALAREIAKETGAKITITEDPEEAV 222 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCccccc--CHH----HH---HHHHHHHHHcCCeEEEEcCHHHHh
Confidence 3789999999987 788999999999999999887642211 000 00 00000111111 236899999
Q ss_pred hcCCEEEEeccCC-------hh-----hhcccCHHHHh-cCCCCcEEEEc
Q 017490 248 SKADVVVCCLSLN-------KQ-----TAGIVNKSFLS-SMKKGSLLVNI 284 (370)
Q Consensus 248 ~~aDiV~l~lP~t-------~~-----t~~li~~~~l~-~mk~gailIN~ 284 (370)
+++|+|..-+=.. ++ ...-++++.++ .+|+++++.-+
T Consensus 223 ~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~ 272 (331)
T PRK02102 223 KGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHC 272 (331)
T ss_pred CCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECC
Confidence 9999998843100 01 12334556666 35666666544
No 376
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=92.76 E-value=0.68 Score=45.05 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=62.7
Q ss_pred ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHHhc
Q 017490 175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFASK 249 (370)
Q Consensus 175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell~~ 249 (370)
+.|.+|+++|- +++-++++..+..+|++|...-|..-.... . +. +.+.+.....+ ...++++.+++
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~--~----~~---~~~~~~~~~~g~~~~~~~d~~~a~~~ 216 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDA--D----IV---KKAQEIAKENGGSVELTHDPVEAVKG 216 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCH--H----HH---HHHHHHHHHcCCeEEEEcCHHHHhCC
Confidence 78999999996 788899999999999999998764321100 0 00 00000011111 23689999999
Q ss_pred CCEEEEec--cCC-----h-----hhhcccCHHHHhcCCCCcEEEEc
Q 017490 250 ADVVVCCL--SLN-----K-----QTAGIVNKSFLSSMKKGSLLVNI 284 (370)
Q Consensus 250 aDiV~l~l--P~t-----~-----~t~~li~~~~l~~mk~gailIN~ 284 (370)
+|+|..-. ... + .....++++.++.+|+++++.-+
T Consensus 217 aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304)
T TIGR00658 217 ADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304)
T ss_pred CCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC
Confidence 99998742 100 0 01235667777777777776655
No 377
>PLN00106 malate dehydrogenase
Probab=92.75 E-value=0.3 Score=47.96 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=62.2
Q ss_pred cCceEEEEec-CchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCE
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi 252 (370)
..++|+|+|. |.||..+|..|...|. ++..+|..... ....+. .-.. ............++.+.++.||+
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~Dl----~~~~--~~~~i~~~~~~~d~~~~l~~aDi 89 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAADV----SHIN--TPAQVRGFLGDDQLGDALKGADL 89 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEchh----hhCC--cCceEEEEeCCCCHHHHcCCCCE
Confidence 3469999999 9999999999874444 89999986621 111110 0000 00001110123456788999999
Q ss_pred EEEeccC--Ch-hhhc-cc--CH-------HHHhcCCCCcEEEEcCCCcc
Q 017490 253 VVCCLSL--NK-QTAG-IV--NK-------SFLSSMKKGSLLVNIARGGL 289 (370)
Q Consensus 253 V~l~lP~--t~-~t~~-li--~~-------~~l~~mk~gailIN~sRg~~ 289 (370)
|+++.-. .+ .++. ++ |. +.+....|.+++++++..--
T Consensus 90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 9987542 21 1221 22 11 12444568999999977653
No 378
>PRK14852 hypothetical protein; Provisional
Probab=92.75 E-value=0.62 Score=51.88 Aligned_cols=183 Identities=16% Similarity=0.124 Sum_probs=96.1
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccc----cc------------hhhhcccc
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQ----SS------------ALAVKNGI 229 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~----~~------------~~~~~~~~ 229 (370)
|+......|+.++|+|+|+|.+|..+|+.|...|. ++...|...-...--..+ .. .+...+..
T Consensus 322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~ 401 (989)
T PRK14852 322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPF 401 (989)
T ss_pred cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCC
Confidence 43333457999999999999999999999998887 577766432110000000 00 00000000
Q ss_pred cc-ccccccCCCCCHHHHHhcCCEEEEeccCCh-hhhcccCHHHHhcCCCCcEEEEcCCCcc------------cCH---
Q 017490 230 ID-DLVDEKGCHEDIFEFASKADVVVCCLSLNK-QTAGIVNKSFLSSMKKGSLLVNIARGGL------------LDY--- 292 (370)
Q Consensus 230 ~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~-~t~~li~~~~l~~mk~gailIN~sRg~~------------vd~--- 292 (370)
+. +...+....++++++++.+|+|+-|+-... +.+..++... .+.+.-+|..+-.+. ..+
T Consensus 402 v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c---~~~~IP~I~ag~~G~~g~v~v~~p~~~~~~~~f 478 (989)
T PRK14852 402 LDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRA---LELGIPVITAGPLGYSCALLVFMPGGMNFDSYF 478 (989)
T ss_pred CeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHH---HHcCCCEEEeeccccCeeEEEEcCCCCCHHHhC
Confidence 00 000011123567788999999998875421 2333333222 234455555543111 000
Q ss_pred ------HHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceEEccCCCCccHHHHHHHHHHHHHHHHHHHcCC
Q 017490 293 ------EAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGT 361 (370)
Q Consensus 293 ------~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~ 361 (370)
..+...|+ .++ ...|-+-.-..++..+|-+.-+.+-.+..+....+..+++.+.+++-|+
T Consensus 479 ~~~~~~p~~~~~~~------~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~ 544 (989)
T PRK14852 479 GIDDDTPPMEGYLR------FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHR 544 (989)
T ss_pred CCCCCCchHhhhhh------hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCC
Confidence 00111111 011 1112111123345666666667777788888888889999999998777
No 379
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.74 E-value=0.33 Score=47.66 Aligned_cols=108 Identities=18% Similarity=0.110 Sum_probs=60.2
Q ss_pred cccCceEEEEec-CchhHHHHHHhcc--CCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRP--FGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~--~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
.++.++|+|+|. |.||..+|..+.. ...++..+|+.... ....+. . +..............+..+.++.|
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~-g~a~Dl----~--~~~~~~~v~~~td~~~~~~~l~ga 77 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP-GVAADL----S--HIDTPAKVTGYADGELWEKALRGA 77 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc-ccccch----h--hcCcCceEEEecCCCchHHHhCCC
Confidence 356779999999 9999999999884 44589999983211 111110 0 000000000000112336789999
Q ss_pred CEEEEeccCChh---hh-cccCH------HH---HhcCCCCcEEEEcCCCc
Q 017490 251 DVVVCCLSLNKQ---TA-GIVNK------SF---LSSMKKGSLLVNIARGG 288 (370)
Q Consensus 251 DiV~l~lP~t~~---t~-~li~~------~~---l~~mk~gailIN~sRg~ 288 (370)
|+|++++-.... ++ .++.. .. +..-.+.++++.++-+-
T Consensus 78 DvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 78 DLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 999988653211 11 12221 22 33346677888887653
No 380
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.73 E-value=0.13 Score=53.03 Aligned_cols=117 Identities=21% Similarity=0.179 Sum_probs=68.7
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
+.||+|+|+|+|.-|.+.|+.|...|++|+++|........... .+ .+.........+ .+.+.++|+|+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~---~l-------~~~~~~~~~~~~-~~~~~~~d~vV 74 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVG---AL-------ADAALLVETEAS-AQRLAAFDVVV 74 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHH---HH-------hhcCEEEeCCCC-hHHccCCCEEE
Confidence 56899999999999999999999999999999965332111000 00 000000001112 34567889887
Q ss_pred Ee--ccCC-hhh-------hcccCHHH--Hhc-CC-----CCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490 255 CC--LSLN-KQT-------AGIVNKSF--LSS-MK-----KGSLLVNIARGGLLDYEAIAHYLECG 302 (370)
Q Consensus 255 l~--lP~t-~~t-------~~li~~~~--l~~-mk-----~gailIN~sRg~~vd~~aL~~aL~~g 302 (370)
.. +|.+ |.. ..++.+-. +.. ++ ...+-|--+.|..-...-+.+.|+..
T Consensus 75 ~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~ 140 (468)
T PRK04690 75 KSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA 140 (468)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 75 3322 211 12344333 333 32 23556666678888888888888753
No 381
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=92.72 E-value=0.26 Score=48.12 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=49.1
Q ss_pred ceEEEEe-cCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiG-lG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
.+|+|+| .|.+|+++.+.|..... ++.....+... .. .+.++.+.++|+|++
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~~-------~~~~~~~~~~DvvFl 56 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------DA-------AARRELLNAADVAIL 56 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------cc-------cCchhhhcCCCEEEE
Confidence 4799999 69999999999987553 55544322111 00 123455678999999
Q ss_pred eccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 256 ~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
++|...+ ..+. .+ + .+.|..+||.|
T Consensus 57 alp~~~s-~~~~-~~-~--~~~g~~VIDlS 81 (313)
T PRK11863 57 CLPDDAA-REAV-AL-I--DNPATRVIDAS 81 (313)
T ss_pred CCCHHHH-HHHH-HH-H--HhCCCEEEECC
Confidence 9995422 2221 11 1 24688899888
No 382
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.68 E-value=0.38 Score=46.87 Aligned_cols=33 Identities=30% Similarity=0.279 Sum_probs=28.4
Q ss_pred ceEEEEec-CchhHHHHHHhccCCC--EEEEEcCCC
Q 017490 178 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSW 210 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~ 210 (370)
++|+|+|. |.+|..+|..+...|. +|+.+|+..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 47999998 9999999999987776 599999853
No 383
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.65 E-value=0.063 Score=48.88 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=36.4
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
|+....+.|++++|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus 9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 54444467899999999999999999999998898 588888653
No 384
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.65 E-value=0.15 Score=49.27 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=46.1
Q ss_pred ceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccccccc-ccCCCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD-EKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV~l 255 (370)
++|.|.| .|.||+.+++.|...|++|.+..|+..+...... .+ .+.+. ......++.+.++.+|+|+.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~--------~~--v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE--------WG--AELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh--------cC--CEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 3789999 5999999999999999999999987533110000 00 01110 01123457778899999887
Q ss_pred ecc
Q 017490 256 CLS 258 (370)
Q Consensus 256 ~lP 258 (370)
+.+
T Consensus 71 ~~~ 73 (317)
T CHL00194 71 AST 73 (317)
T ss_pred CCC
Confidence 644
No 385
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=92.64 E-value=0.34 Score=45.34 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=56.2
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh---cCC
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS---KAD 251 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aD 251 (370)
+.|++|.=||+|. ..++.-++..|++|++.|.+.+........ . . ...+.--......+++.. +-|
T Consensus 58 l~g~~vLDvGCGg--G~Lse~mAr~Ga~VtgiD~se~~I~~Ak~h----a-~----e~gv~i~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPGLRVLDVGCGG--GILSEPLARLGASVTGIDASEKPIEVAKLH----A-L----ESGVNIDYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCCCeEEEecCCc--cHhhHHHHHCCCeeEEecCChHHHHHHHHh----h-h----hccccccchhhhHHHHHhcCCCcc
Confidence 8999999999983 578888888899999999876542111000 0 0 001110012245666665 679
Q ss_pred EEEE-----eccCChhhhcccCHHHHhcCCCCcEEEE
Q 017490 252 VVVC-----CLSLNKQTAGIVNKSFLSSMKKGSLLVN 283 (370)
Q Consensus 252 iV~l-----~lP~t~~t~~li~~~~l~~mk~gailIN 283 (370)
+|++ |+|.... +-+...+.+|||.+++-
T Consensus 127 vV~cmEVlEHv~dp~~----~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 127 VVTCMEVLEHVPDPES----FLRACAKLVKPGGILFL 159 (243)
T ss_pred EEEEhhHHHccCCHHH----HHHHHHHHcCCCcEEEE
Confidence 8876 4443221 22346677899876653
No 386
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.62 E-value=0.25 Score=46.79 Aligned_cols=69 Identities=16% Similarity=0.075 Sum_probs=46.0
Q ss_pred eEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHH------hc-
Q 017490 179 TVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFA------SK- 249 (370)
Q Consensus 179 tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell------~~- 249 (370)
+|.|+|. |.+|+.+++.|...|++|.+..|++.+.... . .+.. ......+++.+.+ ..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~-~------------~~~~~~d~~d~~~l~~a~~~~~~~~g~ 67 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGP-N------------EKHVKFDWLDEDTWDNPFSSDDGMEPE 67 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCC-C------------CccccccCCCHHHHHHHHhcccCcCCc
Confidence 4778886 9999999999999999999999986542110 0 0011 0111234566666 45
Q ss_pred CCEEEEeccCC
Q 017490 250 ADVVVCCLSLN 260 (370)
Q Consensus 250 aDiV~l~lP~t 260 (370)
+|.|+++.|..
T Consensus 68 ~d~v~~~~~~~ 78 (285)
T TIGR03649 68 ISAVYLVAPPI 78 (285)
T ss_pred eeEEEEeCCCC
Confidence 89999887754
No 387
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.61 E-value=0.22 Score=45.72 Aligned_cols=38 Identities=29% Similarity=0.502 Sum_probs=34.1
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.++++.|+|. |.||+.+++.|...|++|++++|+..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999995 89999999999999999999998754
No 388
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.50 E-value=0.3 Score=45.63 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=34.7
Q ss_pred ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
..++|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3578999999996 99999999999999999999998754
No 389
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.48 E-value=0.11 Score=50.44 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=34.6
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 212 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~ 212 (370)
-.|+|++|+|+|.+|.+++.-++++|. +++++|.++++
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence 368999999999999999999999998 89999988665
No 390
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.46 E-value=0.18 Score=49.64 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=51.0
Q ss_pred CceEEEEec-CchhHHHHHHhccCCCE---EEEEcCCCccccccccccchhhhccccccccccccCCCCCHH-HHHhcCC
Q 017490 177 GKTVFILGF-GNIGVELAKRLRPFGVK---IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF-EFASKAD 251 (370)
Q Consensus 177 g~tvGIiGl-G~IG~~vA~~l~~~G~~---V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aD 251 (370)
+++|+|+|. |.+|+++++.|...|+. +.++.+....... +.. . . ... ...+++ ..+..+|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~-------l~~-~-----g-~~i-~v~d~~~~~~~~vD 65 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKE-------LSF-K-----G-KEL-KVEDLTTFDFSGVD 65 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCe-------eee-C-----C-cee-EEeeCCHHHHcCCC
Confidence 468999995 99999999999886653 4555433222100 000 0 0 000 011111 2347899
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
+|+.|+|.. .++.+.. + .++.|+++|+.|.
T Consensus 66 vVf~A~g~g-~s~~~~~-~---~~~~G~~VIDlS~ 95 (334)
T PRK14874 66 IALFSAGGS-VSKKYAP-K---AAAAGAVVIDNSS 95 (334)
T ss_pred EEEECCChH-HHHHHHH-H---HHhCCCEEEECCc
Confidence 999999854 2222221 1 1356889998874
No 391
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.45 E-value=3.8 Score=38.15 Aligned_cols=41 Identities=15% Similarity=0.132 Sum_probs=35.8
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
..+++|++|.|||.|.++..=++.|..+|++|.++.+...+
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~ 60 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSK 60 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence 45678999999999999999889999999999999876543
No 392
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=92.41 E-value=0.29 Score=48.45 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=32.6
Q ss_pred cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 212 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~ 212 (370)
.|.+|.|.|.|.+|...++.++..|+ +|++.+++..+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r 228 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDK 228 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence 47899999999999999999999999 69998876544
No 393
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=92.30 E-value=0.41 Score=47.34 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=46.4
Q ss_pred ccccCceEEEEec---CchhHHHHHHhc-cCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHH
Q 017490 173 ETLLGKTVFILGF---GNIGVELAKRLR-PFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIF 244 (370)
Q Consensus 173 ~~l~g~tvGIiGl---G~IG~~vA~~l~-~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ 244 (370)
..+.|++|+++|= +++..+++..+. -+|++|....+..-.. +.. + .+.....+ ...+++
T Consensus 155 ~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~--~~~----~-------~~~~~~~g~~~~~~~d~~ 221 (338)
T PRK08192 155 RGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAM--PDY----V-------ISDIENAGHKITITDQLE 221 (338)
T ss_pred CCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccC--CHH----H-------HHHHHHcCCeEEEEcCHH
Confidence 3588999999997 577888888765 4599998887642110 000 0 00011111 236899
Q ss_pred HHHhcCCEEEEe
Q 017490 245 EFASKADVVVCC 256 (370)
Q Consensus 245 ell~~aDiV~l~ 256 (370)
+.++.+|+|..-
T Consensus 222 ea~~~aDvvyt~ 233 (338)
T PRK08192 222 GNLDKADILYLT 233 (338)
T ss_pred HHHccCCEEEEc
Confidence 999999999873
No 394
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.23 E-value=0.16 Score=52.32 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=34.4
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
..+.+++|.|+|.|.+|.++|+.|+..|++|.++|+..
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45678999999999999999999999999999999654
No 395
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.18 E-value=0.16 Score=43.36 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=28.9
Q ss_pred eEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 179 TVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
+|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999998 799998764
No 396
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.18 E-value=0.17 Score=51.52 Aligned_cols=119 Identities=12% Similarity=0.124 Sum_probs=67.7
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
+.++++.|+|.|.+|.++|+.|+..|++|.++|......... . +. .. ...+. ...-...+..+..+|+|+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~--~---l~---~~-~~gi~-~~~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVA--Q---IG---KM-FDGLV-FYTGRLKDALDNGFDILA 72 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHH--H---Hh---hc-cCCcE-EEeCCCCHHHHhCCCEEE
Confidence 568999999999999999999999999999999764331000 0 00 00 00000 000011233456789888
Q ss_pred Ee--ccC-Chhhh-------cccC-HHHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490 255 CC--LSL-NKQTA-------GIVN-KSFLSS-MK---KGSLLVNIARGGLLDYEAIAHYLECGH 303 (370)
Q Consensus 255 l~--lP~-t~~t~-------~li~-~~~l~~-mk---~gailIN~sRg~~vd~~aL~~aL~~g~ 303 (370)
.. +|. .|... .++. .+.+.. ++ ...+-|--+.|..-...-+...|+...
T Consensus 73 ~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 136 (445)
T PRK04308 73 LSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCG 136 (445)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 75 322 22221 1222 223333 32 234555556788877777888887543
No 397
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=92.17 E-value=0.16 Score=53.39 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=33.5
Q ss_pred ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
-.|+++.|.|. |.||+.+++.|...|++|++++|+...
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ek 116 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQR 116 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 46889999996 999999999999999999999887543
No 398
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=92.11 E-value=0.59 Score=45.67 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=48.7
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHhc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFASK 249 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~~ 249 (370)
.+.|++|++||- +++.++++..+..+|++|.+..|..-.. ..... . .+.....+ ...++++.++.
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~-~~~~~--~--------~~~~~~~g~i~~~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKE-NIHAQ--T--------VERAKKKGTLSWEMNLHKAVSH 218 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccH-HHHHH--H--------HHHHHhcCCeEEEeCHHHHhCC
Confidence 478999999997 7899999999999999999987643110 00000 0 00011111 13689999999
Q ss_pred CCEEEEe
Q 017490 250 ADVVVCC 256 (370)
Q Consensus 250 aDiV~l~ 256 (370)
+|+|..-
T Consensus 219 aDvvy~d 225 (311)
T PRK14804 219 ADYVYTD 225 (311)
T ss_pred CCEEEee
Confidence 9999884
No 399
>PLN02602 lactate dehydrogenase
Probab=91.88 E-value=0.27 Score=48.88 Aligned_cols=101 Identities=12% Similarity=0.213 Sum_probs=58.2
Q ss_pred ceEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccC--CCCCHHHHHhcCCEE
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG--CHEDIFEFASKADVV 253 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ell~~aDiV 253 (370)
++|+|||.|.||..+|..+...|. ++..+|...+..... . .++.... ....... ...+. +.+++||+|
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~-a--~DL~~~~----~~~~~~~i~~~~dy-~~~~daDiV 109 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGE-M--LDLQHAA----AFLPRTKILASTDY-AVTAGSDLC 109 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHH-H--HHHHhhh----hcCCCCEEEeCCCH-HHhCCCCEE
Confidence 699999999999999998875555 799999865432110 0 0110000 0000000 11233 448999999
Q ss_pred EEeccC--Ch-hhh-ccc--CH-------HHHhcCCCCcEEEEcCC
Q 017490 254 VCCLSL--NK-QTA-GIV--NK-------SFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 254 ~l~lP~--t~-~t~-~li--~~-------~~l~~mk~gailIN~sR 286 (370)
+++.-. .+ ++| .++ |. +.+....|.+++|+++.
T Consensus 110 VitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 110 IVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 998442 11 223 222 11 23444578899999984
No 400
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=91.85 E-value=18 Score=38.20 Aligned_cols=206 Identities=10% Similarity=0.088 Sum_probs=122.7
Q ss_pred hcCCCCeEEEEeCcccCc-cchhhHhcCCeEEeccCCCCCCCchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCCccc
Q 017490 96 SRANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET 174 (370)
Q Consensus 96 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~ 174 (370)
...|+ -+|+.---|..+ +.+..--+..|.+.|.- -..+|-.+++.+|+.+|-. +..
T Consensus 238 ~~~P~-~~Iq~EDf~~~naf~iL~kyr~~i~~FnDD------iQGTaaV~lAgll~Alr~~----------------g~~ 294 (559)
T PTZ00317 238 SRWPN-AVVQFEDFSNNHCFDLLERYQNKYRCFNDD------IQGTGAVIAAGFLNALKLS----------------GVP 294 (559)
T ss_pred HhCCC-eEEehhhcCCccHHHHHHHhccCCCEeccc------chhHHHHHHHHHHHHHHHh----------------CCC
Confidence 34677 366665555443 33333334458888862 2457888899999998842 567
Q ss_pred ccCceEEEEecCchhHHHHHHhcc----CCC-------EEEEEcCCCccccccccccchhhhcccccccccccc--C---
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK--G--- 238 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~----~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 238 (370)
|...++.|.|.|..|-.+|+.+.. .|. +++.+|+..--...-.+...++. ..++... .
T Consensus 295 l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k------~~fa~~~~~~~~~ 368 (559)
T PTZ00317 295 PEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHK------VPFARTDISAEDS 368 (559)
T ss_pred hhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHH------HHHhccccccccc
Confidence 999999999999999999998763 577 79999976421100000000000 0111111 0
Q ss_pred CCCCHHHHHhcC--CEEEEeccCChhhhcccCHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--hCCc-eEEEEe
Q 017490 239 CHEDIFEFASKA--DVVVCCLSLNKQTAGIVNKSFLSSMKK---GSLLVNIARGGLLDYEAIAHYLE--CGHL-GGLGID 310 (370)
Q Consensus 239 ~~~~l~ell~~a--DiV~l~lP~t~~t~~li~~~~l~~mk~---gailIN~sRg~~vd~~aL~~aL~--~g~i-~ga~lD 310 (370)
...+|.|+++.. |+++-+- ...+.++++.++.|.+ ..++.=.|+...--|-.-.+|.+ +|+. .+.|.
T Consensus 369 ~~~~L~e~v~~~KPtvLIG~S----~~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGs- 443 (559)
T PTZ00317 369 SLKTLEDVVRFVKPTALLGLS----GVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGS- 443 (559)
T ss_pred cCCCHHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECC-
Confidence 135899999988 9887641 2347899999999974 89999999876433333333443 3443 32222
Q ss_pred cCCCCCCCCCCc---ccCCCceEEccCCCC
Q 017490 311 VAWTEPFDPNDP---ILKFKNVLITPHVGG 337 (370)
Q Consensus 311 V~~~EPl~~~~p---L~~~~nvilTPHia~ 337 (370)
=| +|..-+.. -=...|+++-|=++-
T Consensus 444 pf--~pv~~~G~~~~p~Q~NN~~iFPGigl 471 (559)
T PTZ00317 444 PF--PPVTLNGKTIQPSQGNNLYVFPGVGL 471 (559)
T ss_pred CC--CCcccCCeeeccCcCcceeeccchhh
Confidence 11 11111111 124577888886543
No 401
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.83 E-value=0.43 Score=46.91 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=32.4
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCcc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS 212 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~ 212 (370)
.|++|.|.|.|.+|...++.++..|.+ |++.+++..+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~ 213 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRK 213 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 488999999999999999999999995 9998876543
No 402
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.77 E-value=0.38 Score=46.64 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=32.8
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCcc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWAS 212 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~ 212 (370)
.|.+|.|+|.|.+|...++.++.+|++ |++.+++..+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~ 200 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPER 200 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHH
Confidence 488999999999999999999999999 9998876443
No 403
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.75 E-value=0.4 Score=45.96 Aligned_cols=36 Identities=36% Similarity=0.305 Sum_probs=31.7
Q ss_pred cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.|++|.|.| .|-||+.+++.|...|++|.+++|+..
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~ 39 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPN 39 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 368999999 699999999999999999998887643
No 404
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=91.65 E-value=2.4 Score=44.43 Aligned_cols=137 Identities=20% Similarity=0.301 Sum_probs=95.0
Q ss_pred cccccCceEEEEecCc-hhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcC
Q 017490 172 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKA 250 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~-IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a 250 (370)
+..+.|+...++|-.. +|.+++..|+.....|...-.. ..++.+.+.++
T Consensus 157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK------------------------------T~~lae~v~~A 206 (935)
T KOG4230|consen 157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK------------------------------TRNLAEKVSRA 206 (935)
T ss_pred CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC------------------------------CccHHHHhccC
Confidence 4568999999999865 5999999999988999886321 24688889999
Q ss_pred CEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCCCCCcccCCCceE
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL 330 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvi 330 (370)
|+|+.++--. +++-.++ +|||+++|+++--.+-|..- ++|. -..-||...+--. ---.
T Consensus 207 DIvIvAiG~P----efVKgdW---iKpGavVIDvGINyvpD~~K-----ksg~--klvGDVdfe~Ake--------vas~ 264 (935)
T KOG4230|consen 207 DIVIVAIGQP----EFVKGDW---IKPGAVVIDVGINYVPDPSK-----KSGF--KLVGDVDFESAKE--------VASF 264 (935)
T ss_pred CEEEEEcCCc----ceeeccc---ccCCcEEEEccccccCCCCC-----cccc--eEeeecchHhhhh--------hhhc
Confidence 9999998643 2344443 69999999998766544311 1221 1355664443210 1125
Q ss_pred EccCCCCccHHHHHHHHHHHHHHHHHHHcC
Q 017490 331 ITPHVGGVTEHSYRSMAKVVGDVALQLHAG 360 (370)
Q Consensus 331 lTPHia~~t~~~~~~~~~~~~~ni~~~~~g 360 (370)
+||-=||.-+....-+.+.+++..+|+..+
T Consensus 265 ITPVPGGVGPMTVAMLmqNtveaAKR~r~e 294 (935)
T KOG4230|consen 265 ITPVPGGVGPMTVAMLMQNTVEAAKRQREE 294 (935)
T ss_pred cccCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 799888888877777778888887777643
No 405
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=91.65 E-value=0.38 Score=47.99 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=31.9
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
.|.+|.|.|.|.+|...++.++.+|.+|++.+++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58899999999999999999999999999987653
No 406
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=91.65 E-value=2.4 Score=41.90 Aligned_cols=73 Identities=15% Similarity=0.017 Sum_probs=45.5
Q ss_pred c-cCceEEEEecC-------chhHHHHHHhccCCCEEEEEcC-CCccccccccccchhhhccccccccccccC----CCC
Q 017490 175 L-LGKTVFILGFG-------NIGVELAKRLRPFGVKIIATKR-SWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE 241 (370)
Q Consensus 175 l-~g~tvGIiGlG-------~IG~~vA~~l~~~G~~V~~~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 241 (370)
+ .|++|+|+|.| ++.++++..+..+|++|.+..| ..-.... . +. +.+.+.....+ ...
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~--~----~~---~~~~~~~~~~g~~~~~~~ 236 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDE--R----YM---DWAEQNAAESGGSLTVSH 236 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCH--H----HH---HHHHHHHHHcCCeEEEEc
Confidence 6 79999887654 6788888888999999999876 3211000 0 00 00000011111 246
Q ss_pred CHHHHHhcCCEEEEe
Q 017490 242 DIFEFASKADVVVCC 256 (370)
Q Consensus 242 ~l~ell~~aDiV~l~ 256 (370)
++++.++.+|+|..-
T Consensus 237 d~~ea~~~aDvvy~~ 251 (335)
T PRK04523 237 DIDSAYAGADVVYAK 251 (335)
T ss_pred CHHHHhCCCCEEEec
Confidence 899999999999874
No 407
>PLN02740 Alcohol dehydrogenase-like
Probab=91.64 E-value=0.47 Score=47.16 Aligned_cols=38 Identities=32% Similarity=0.496 Sum_probs=33.2
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 212 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~ 212 (370)
-.|.+|.|+|.|.||...++.++.+|. +|++.+++..+
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r 235 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEK 235 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHH
Confidence 358899999999999999999999999 69999876543
No 408
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.58 E-value=0.24 Score=44.96 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=34.5
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
.++|+++.|.|. |.||+.+++.+...|++|++++|+..+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~ 43 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAP 43 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHh
Confidence 477999999995 999999999999889999999987543
No 409
>PRK06182 short chain dehydrogenase; Validated
Probab=91.55 E-value=1.4 Score=41.30 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=32.1
Q ss_pred cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.++++.|.|. |.||+++|+.+...|++|++.+|+.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~ 38 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVD 38 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4789999995 89999999999999999999988754
No 410
>PRK07856 short chain dehydrogenase; Provisional
Probab=91.53 E-value=0.28 Score=45.43 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=33.5
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
.+.||++.|.|. |.||+.+|+.|...|++|+..+|+.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 478999999996 7899999999999999999999865
No 411
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.46 E-value=0.38 Score=47.14 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=33.1
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
.|.+|.|+|.|.||...++.++..|.+|++.+++..+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~ 202 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEK 202 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHH
Confidence 4889999999999999999999999999999876543
No 412
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.42 E-value=0.22 Score=50.73 Aligned_cols=114 Identities=12% Similarity=0.166 Sum_probs=66.0
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccc---cccccCCCCCHHHHHhcCCE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD---LVDEKGCHEDIFEFASKADV 252 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~ell~~aDi 252 (370)
++-+++|+|+|.+|.++|+.|+..|++|.++|......... . + .. .+.-.....+ .+.+.++|+
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~--~---l-------~~~~~g~~~~~~~~~-~~~~~~~d~ 71 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLD--T---L-------AREFPDVELRCGGFD-CELLVQASE 71 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHH--H---H-------HhhcCCcEEEeCCCC-hHHhcCCCE
Confidence 35589999999999999999999999999999754321000 0 0 00 0000000112 244567898
Q ss_pred EEEe--ccC-Chhhh-------cccCH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490 253 VVCC--LSL-NKQTA-------GIVNK-SFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECG 302 (370)
Q Consensus 253 V~l~--lP~-t~~t~-------~li~~-~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g 302 (370)
|+.. +|. +|... .++.+ +.+.. ++...+-|--+.|..-...-+...|+..
T Consensus 72 vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~ 133 (448)
T PRK03803 72 IIISPGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAA 133 (448)
T ss_pred EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 8764 332 22211 12332 23323 3434555655678888888888888753
No 413
>PRK06196 oxidoreductase; Provisional
Probab=91.41 E-value=0.27 Score=47.42 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=34.5
Q ss_pred ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
..+.|+++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3578999999997 89999999999999999999998754
No 414
>PLN02214 cinnamoyl-CoA reductase
Probab=91.41 E-value=0.42 Score=46.85 Aligned_cols=38 Identities=32% Similarity=0.295 Sum_probs=33.8
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.+++|.|.|. |.||+.+++.|...|++|.+..|+..
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~ 45 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPD 45 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCch
Confidence 467899999997 99999999999999999999988643
No 415
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.41 E-value=0.11 Score=47.64 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=53.0
Q ss_pred EEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEEEEec
Q 017490 180 VFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 180 vGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~l 257 (370)
|.|+|. |.+|+.+++.|...|++|.+.-|+..+..... +.... .+.+ ..+...+++.+.++.+|.|++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~-----l~~~g---~~vv~~d~~~~~~l~~al~g~d~v~~~~ 72 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQ-----LQALG---AEVVEADYDDPESLVAALKGVDAVFSVT 72 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHH-----HHHTT---TEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhh-----hhccc---ceEeecccCCHHHHHHHHcCCceEEeec
Confidence 678995 99999999999999999999988764311110 00000 0111 01112356778899999999999
Q ss_pred cCC-----hhhhcccCHHHH
Q 017490 258 SLN-----KQTAGIVNKSFL 272 (370)
Q Consensus 258 P~t-----~~t~~li~~~~l 272 (370)
|.. +....++++..=
T Consensus 73 ~~~~~~~~~~~~~li~Aa~~ 92 (233)
T PF05368_consen 73 PPSHPSELEQQKNLIDAAKA 92 (233)
T ss_dssp SCSCCCHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhHHHhhhc
Confidence 953 133445554443
No 416
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=91.41 E-value=0.54 Score=46.35 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=62.1
Q ss_pred cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490 174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA 247 (370)
Q Consensus 174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell 247 (370)
.+.|++|++||-+ ++.++++..+..+|++|...-|..-.. +.. +. . .+.+.....+ ...++++.+
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~--~~~----~~--~-~~~~~~~~~g~~~~~~~d~~ea~ 222 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNP--DDE----LL--N-KCKEIAAETGGKITITDDIDEGV 222 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccC--CHH----HH--H-HHHHHHHHcCCeEEEEcCHHHHh
Confidence 3789999999975 888999999999999999987642111 000 00 0 0000001111 246899999
Q ss_pred hcCCEEEEeccCC--------hh-----hhcccCHHHHhcCC-CCcEEEEc
Q 017490 248 SKADVVVCCLSLN--------KQ-----TAGIVNKSFLSSMK-KGSLLVNI 284 (370)
Q Consensus 248 ~~aDiV~l~lP~t--------~~-----t~~li~~~~l~~mk-~gailIN~ 284 (370)
+++|+|..-.=.. ++ ..+.++++.++.+| |++++.-+
T Consensus 223 ~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp 273 (332)
T PRK04284 223 KGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC 273 (332)
T ss_pred CCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC
Confidence 9999998742100 00 12345667777775 47777665
No 417
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=91.34 E-value=0.39 Score=46.31 Aligned_cols=67 Identities=25% Similarity=0.280 Sum_probs=42.6
Q ss_pred ceEEEEecCchhHHHHHHhc-cCCCEEEE-EcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh--cC
Q 017490 178 KTVFILGFGNIGVELAKRLR-PFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--KA 250 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~-~~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--~a 250 (370)
.++||||.|.||+..+..+. .-++++.+ +|+++.+... ....+.+ .+.+.+++++ +.
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~l----------------a~A~~~Gi~~~~~~~e~ll~~~dI 65 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGL----------------ARARELGVKTSAEGVDGLLANPDI 65 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHH----------------HHHHHCCCCEEECCHHHHhcCCCC
Confidence 37999999999998876655 44677654 6665443100 1112222 2356788875 57
Q ss_pred CEEEEeccCC
Q 017490 251 DVVVCCLSLN 260 (370)
Q Consensus 251 DiV~l~lP~t 260 (370)
|+|+++.|..
T Consensus 66 DaV~iaTp~~ 75 (285)
T TIGR03215 66 DIVFDATSAK 75 (285)
T ss_pred CEEEECCCcH
Confidence 8899998844
No 418
>PRK06197 short chain dehydrogenase; Provisional
Probab=91.32 E-value=0.21 Score=47.93 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=39.6
Q ss_pred hcccCCCCcccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 164 QKKLGVPTGETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 164 ~~~~~~~~~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.|......++.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 3 ~~~~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~ 51 (306)
T PRK06197 3 MTKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD 51 (306)
T ss_pred CCCCCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3456544456789999999995 99999999999999999999888643
No 419
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.27 E-value=0.46 Score=46.99 Aligned_cols=37 Identities=32% Similarity=0.447 Sum_probs=32.8
Q ss_pred cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 212 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~ 212 (370)
.|.+|.|+|.|.||...++.++.+|. +|++.+++..+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~ 222 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAK 222 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 57899999999999999999999999 79999876543
No 420
>PRK06153 hypothetical protein; Provisional
Probab=91.22 E-value=0.18 Score=50.43 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=33.2
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 209 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~ 209 (370)
..|++++|+|||+|.+|..++..|...|. ++..+|..
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 36889999999999999999999999888 78888864
No 421
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=91.21 E-value=0.57 Score=46.29 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=60.9
Q ss_pred cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490 174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA 247 (370)
Q Consensus 174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell 247 (370)
.+.|++|++||-+ ++.++++..+..+|++|.+.-|..-.. +.+ +. +.+.+.....+ ...++++.+
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~--~~~----~~---~~~~~~~~~~g~~i~~~~d~~ea~ 223 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWP--EAA----LV---TECRALAQKNGGNITLTEDIAEGV 223 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcC--cHH----HH---HHHHHHHHHcCCeEEEEcCHHHHh
Confidence 4789999999975 689999999999999999987643211 000 00 00000111111 246899999
Q ss_pred hcCCEEEEeccCC-------------hhhhcccCHHHHhcC-CCCcEEEEc
Q 017490 248 SKADVVVCCLSLN-------------KQTAGIVNKSFLSSM-KKGSLLVNI 284 (370)
Q Consensus 248 ~~aDiV~l~lP~t-------------~~t~~li~~~~l~~m-k~gailIN~ 284 (370)
+++|+|..-.=.. .-...-++++.++.. |++++|.-+
T Consensus 224 ~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHc 274 (336)
T PRK03515 224 KGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHC 274 (336)
T ss_pred CCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECC
Confidence 9999998742100 001234456666653 566666555
No 422
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.21 E-value=0.28 Score=49.87 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=33.5
Q ss_pred cccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490 174 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 174 ~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
++.++++.|+|+|..|.+.++.|+..|.+|.++|...
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3568899999999999999999999999999999754
No 423
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.20 E-value=0.5 Score=46.43 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=57.3
Q ss_pred eEEEEec-CchhHHHHHHhccCC-------CEEEEEcCCCccccccccccchhhhccccccccccc-------cCCCCCH
Q 017490 179 TVFILGF-GNIGVELAKRLRPFG-------VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE-------KGCHEDI 243 (370)
Q Consensus 179 tvGIiGl-G~IG~~vA~~l~~~G-------~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l 243 (370)
+|+|+|. |.+|+.++..|...| .+|..+|+....... ... ..++.+. .....++
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~-~g~----------~~Dl~d~~~~~~~~~~~~~~~ 72 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKAL-EGV----------VMELQDCAFPLLKSVVATTDP 72 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccc-cce----------eeehhhccccccCCceecCCH
Confidence 6999999 999999999987633 489999985432100 000 0111110 0013567
Q ss_pred HHHHhcCCEEEEeccCC--h-hhh-ccc--CHH-------HHhcC-CCCcEEEEcCC
Q 017490 244 FEFASKADVVVCCLSLN--K-QTA-GIV--NKS-------FLSSM-KKGSLLVNIAR 286 (370)
Q Consensus 244 ~ell~~aDiV~l~lP~t--~-~t~-~li--~~~-------~l~~m-k~gailIN~sR 286 (370)
.+.++.||+|+.+.-.. + +++ .++ |.+ .+... +|++++|.++.
T Consensus 73 ~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 73 EEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred HHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 78899999998874432 1 121 111 222 23344 57889998873
No 424
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.16 E-value=0.29 Score=45.85 Aligned_cols=95 Identities=19% Similarity=0.235 Sum_probs=58.2
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH--HhcCC
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF--ASKAD 251 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el--l~~aD 251 (370)
-.|.++.|.|.|.+|..+++.+++.|.+ |++.+++..+..... .. ........ ..+.. -...|
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~--------~~----g~~~~~~~--~~~~~~~~~~~d 161 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAE--------AL----GPADPVAA--DTADEIGGRGAD 161 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHH--------Hc----CCCccccc--cchhhhcCCCCC
Confidence 3578999999999999999999999999 999887543311000 00 00000000 00011 12478
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
+++.++.... . -...+..++++..+++++-.+
T Consensus 162 ~vl~~~~~~~----~-~~~~~~~l~~~g~~~~~g~~~ 193 (277)
T cd08255 162 VVIEASGSPS----A-LETALRLLRDRGRVVLVGWYG 193 (277)
T ss_pred EEEEccCChH----H-HHHHHHHhcCCcEEEEEeccC
Confidence 8887765322 1 235677889999999887543
No 425
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.16 E-value=0.37 Score=47.93 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=31.8
Q ss_pred cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
.+++|.|.|. |.||+.+++.|...|++|++++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 5689999997 9999999999999999999999753
No 426
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.15 E-value=0.41 Score=46.95 Aligned_cols=106 Identities=15% Similarity=0.091 Sum_probs=61.1
Q ss_pred ceEEEEec-CchhHHHHHHhccCCC-------EEEEEcCCCccccccccccchhhhcccccccccccc-------CCCCC
Q 017490 178 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK-------GCHED 242 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~~~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 242 (370)
++|+|||. |.||..+|..+...|. ++..+|....... .... ..++.+.. ....+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~-a~g~----------a~Dl~~~~~~~~~~~~i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKA-LEGV----------AMELEDCAFPLLAEIVITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccc-ccee----------ehhhhhccccccCceEEecC
Confidence 48999999 9999999998876555 7999998533210 0000 01111110 01134
Q ss_pred HHHHHhcCCEEEEeccC--Ch-hhhc-cc--CHH-------HHhcCC-CCcEEEEcCCCcccCHHHHH
Q 017490 243 IFEFASKADVVVCCLSL--NK-QTAG-IV--NKS-------FLSSMK-KGSLLVNIARGGLLDYEAIA 296 (370)
Q Consensus 243 l~ell~~aDiV~l~lP~--t~-~t~~-li--~~~-------~l~~mk-~gailIN~sRg~~vd~~aL~ 296 (370)
..+.+++||+|+++.-. .+ +||- ++ |.+ .+.... |.+++|+++ ..+|.-.-+
T Consensus 72 ~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 137 (322)
T cd01338 72 PNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALI 137 (322)
T ss_pred cHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHH
Confidence 56788999999998543 11 1221 11 111 233345 588999996 555554433
No 427
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.13 E-value=0.36 Score=50.84 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=36.8
Q ss_pred ccCCCCcccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCC
Q 017490 166 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 166 ~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
.|..+......|++|.|||.|.+|...|..|+..|++|+++|+..
T Consensus 126 ~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 126 GWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 454333334579999999999999999999999999999999653
No 428
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=91.08 E-value=0.32 Score=48.30 Aligned_cols=34 Identities=35% Similarity=0.586 Sum_probs=31.1
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
+|||||-|..|..+++.++.+|++|+++|+++..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 5899999999999999999999999999987543
No 429
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.04 E-value=0.53 Score=46.22 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=61.0
Q ss_pred eEEEEec-CchhHHHHHHhccCCC-------EEEEEcCCC--ccccccccccchhhhcccccccccccc-------CCCC
Q 017490 179 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSW--ASHSQVSCQSSALAVKNGIIDDLVDEK-------GCHE 241 (370)
Q Consensus 179 tvGIiGl-G~IG~~vA~~l~~~G~-------~V~~~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 241 (370)
+|+|+|. |.||..+|..|...|. ++..+|+.. ..... ...++.+.. .-..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g-------------~~~Dl~d~~~~~~~~~~i~~ 68 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEG-------------VVMELQDCAFPLLKGVVITT 68 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccce-------------eeeehhhhcccccCCcEEec
Confidence 7999999 9999999998875443 589999865 22100 001111110 0114
Q ss_pred CHHHHHhcCCEEEEeccC--Ch-hhhc-cc--CH-------HHHhcC-CCCcEEEEcCCCcccCHHHHH
Q 017490 242 DIFEFASKADVVVCCLSL--NK-QTAG-IV--NK-------SFLSSM-KKGSLLVNIARGGLLDYEAIA 296 (370)
Q Consensus 242 ~l~ell~~aDiV~l~lP~--t~-~t~~-li--~~-------~~l~~m-k~gailIN~sRg~~vd~~aL~ 296 (370)
+..+.++.||+|+++.-. .+ +||- ++ |. ..++.. +|.+++|.++ .++|.-.-+
T Consensus 69 ~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 135 (323)
T cd00704 69 DPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI 135 (323)
T ss_pred ChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence 567889999999887432 22 1221 11 11 134445 5888898885 556655433
No 430
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=90.99 E-value=0.95 Score=50.85 Aligned_cols=84 Identities=24% Similarity=0.262 Sum_probs=56.4
Q ss_pred cccccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhcccccc-------------ccc----
Q 017490 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID-------------DLV---- 234 (370)
Q Consensus 172 ~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~-------------~~~---- 234 (370)
...-.|++|+|||-|..|.+.|..|...|+.|.+|.|+.+..-- .-|-+++-.++ +.+
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-----l~ygipnmkldk~vv~rrv~ll~~egi~f~t 1854 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-----LMYGIPNMKLDKFVVQRRVDLLEQEGIRFVT 1854 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCce-----eeecCCccchhHHHHHHHHHHHHhhCceEEe
Confidence 34567999999999999999999999999999999987543100 00111110000 000
Q ss_pred -cccCCCCCHHHHHhcCCEEEEeccCC
Q 017490 235 -DEKGCHEDIFEFASKADVVVCCLSLN 260 (370)
Q Consensus 235 -~~~~~~~~l~ell~~aDiV~l~lP~t 260 (370)
.+.+...+++++.++-|.|+++.-.|
T Consensus 1855 n~eigk~vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1855 NTEIGKHVSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred eccccccccHHHHhhccCeEEEEeCCC
Confidence 01223468999999999999986543
No 431
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=90.97 E-value=1.1 Score=38.42 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=62.8
Q ss_pred HHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-C-CCCHHHHHhcCCEEEEeccCChhhhcccC
Q 017490 191 ELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C-HEDIFEFASKADVVVCCLSLNKQTAGIVN 268 (370)
Q Consensus 191 ~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~ell~~aDiV~l~lP~t~~t~~li~ 268 (370)
..+++|...|++|++=.-.....-.. ++.-...| . ..+.++++++||+|+-.=|.+
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fs--------------D~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~-------- 75 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFS--------------DEEYEEAGAEIVSRAEEVYSDADIILKVKPPS-------- 75 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB---------------HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------
T ss_pred HHHHHHHhCCCEEEEECCCCCcCccc--------------HHHHhhCCcEEecCchhhcccCCEEEEECCCC--------
Confidence 45677888899999843322211000 11111122 1 235568999999998765543
Q ss_pred HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHhCCceEEEEecCCC
Q 017490 269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWT 314 (370)
Q Consensus 269 ~~~l~~mk~gailIN~sRg~~vd~~aL~~aL~~g~i~ga~lDV~~~ 314 (370)
.+.++.|++|.++|-..... ....+++.|.+.++...++|-...
T Consensus 76 ~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 76 EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 46778899999999776554 589999999999999777776543
No 432
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=90.91 E-value=0.66 Score=46.20 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=46.1
Q ss_pred cccCceEEEEecC--------chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCC
Q 017490 174 TLLGKTVFILGFG--------NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE 241 (370)
Q Consensus 174 ~l~g~tvGIiGlG--------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 241 (370)
.+.|++|+|+|.| ++.++++..+..+|++|....|..-...+.. . + .+.+...+.+ ...
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~-~--~------~a~~~~~~~g~~~~~~~ 237 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEV-I--E------VAKKNAAENGGKFNIVN 237 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHH-H--H------HHHHHHHHcCCeEEEEc
Confidence 4789999999854 3446778888899999999876422100000 0 0 0000011111 247
Q ss_pred CHHHHHhcCCEEEEe
Q 017490 242 DIFEFASKADVVVCC 256 (370)
Q Consensus 242 ~l~ell~~aDiV~l~ 256 (370)
++++.++.+|+|..-
T Consensus 238 d~~ea~~~aDvvyt~ 252 (357)
T TIGR03316 238 SMDEAFKDADIVYPK 252 (357)
T ss_pred CHHHHhCCCCEEEEC
Confidence 899999999999876
No 433
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=90.90 E-value=0.47 Score=46.48 Aligned_cols=80 Identities=19% Similarity=0.097 Sum_probs=51.4
Q ss_pred cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
.+++|.|.|. |-||+.+++.|...|++|.+.=|++..... ......+.-..+.+.........+.++++.+..||.|+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~-~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf 83 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKK-TEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF 83 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhh-HHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence 6789999996 999999999999999999999888765211 00000110000000011111124578999999999986
Q ss_pred Ee
Q 017490 255 CC 256 (370)
Q Consensus 255 l~ 256 (370)
=+
T Consensus 84 H~ 85 (327)
T KOG1502|consen 84 HT 85 (327)
T ss_pred Ee
Confidence 43
No 434
>PRK07890 short chain dehydrogenase; Provisional
Probab=90.90 E-value=0.66 Score=42.81 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=33.3
Q ss_pred ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
+.+|++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~ 40 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAE 40 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 67899999995 89999999999999999999998653
No 435
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.86 E-value=0.29 Score=44.86 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=34.3
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
+++|+++.|+|. |.||+.+|+.+...|++|++.+++..
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~ 40 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367999999997 99999999999999999999998753
No 436
>PLN02427 UDP-apiose/xylose synthase
Probab=90.82 E-value=0.47 Score=47.17 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=35.0
Q ss_pred CcccccCceEEEEe-cCchhHHHHHHhccC-CCEEEEEcCCC
Q 017490 171 TGETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSW 210 (370)
Q Consensus 171 ~~~~l~g~tvGIiG-lG~IG~~vA~~l~~~-G~~V~~~dr~~ 210 (370)
.|+.++.++|.|.| .|-||+.+++.|... |++|+++|++.
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~ 49 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN 49 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence 46778889999999 599999999999887 59999999764
No 437
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=90.80 E-value=0.24 Score=50.21 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.5
Q ss_pred ceEEEEecCchhHHHHHHhcc-CCCEEEEEc
Q 017490 178 KTVFILGFGNIGVELAKRLRP-FGVKIIATK 207 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~-~G~~V~~~d 207 (370)
.+|||.|+|+||+.++|.+.. ++++|++++
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaIN 116 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVN 116 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEec
Confidence 489999999999999999874 799988854
No 438
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.72 E-value=0.23 Score=48.34 Aligned_cols=103 Identities=12% Similarity=0.234 Sum_probs=56.3
Q ss_pred eEEEEecCchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe
Q 017490 179 TVFILGFGNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC 256 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~ 256 (370)
+|+|||.|.||..+|..+...|. ++..+|......... . .++....... ..........-.+.++.||+|+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~-a--~DL~~~~~~~--~~~~~~i~~~~y~~~~~aDivvit 75 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGE-A--LDFHHATALT--YSTNTKIRAGDYDDCADADIIVIT 75 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHH-H--HHHHhhhccC--CCCCEEEEECCHHHhCCCCEEEEC
Confidence 58999999999999998865554 799999865432110 0 0111000000 000000011234778999999998
Q ss_pred ccC--Ch-hh---hccc--CHH-------HHhcCCCCcEEEEcCC
Q 017490 257 LSL--NK-QT---AGIV--NKS-------FLSSMKKGSLLVNIAR 286 (370)
Q Consensus 257 lP~--t~-~t---~~li--~~~-------~l~~mk~gailIN~sR 286 (370)
.-. .| +| ..++ |.+ .+..-.|.+++|.++.
T Consensus 76 aG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 76 AGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 543 22 23 1222 222 2334457888987754
No 439
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=90.71 E-value=0.63 Score=45.88 Aligned_cols=37 Identities=32% Similarity=0.505 Sum_probs=33.0
Q ss_pred cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCcc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWAS 212 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~ 212 (370)
.|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~ 224 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSK 224 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence 58899999999999999999999999 79999876543
No 440
>PRK08703 short chain dehydrogenase; Provisional
Probab=90.70 E-value=0.33 Score=44.52 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=34.9
Q ss_pred ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
..++|+++.|.|. |.||+.+|+.+...|++|++++|+..
T Consensus 2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~ 41 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQK 41 (239)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChH
Confidence 4578999999995 89999999999999999999998764
No 441
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.69 E-value=0.35 Score=49.66 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=65.6
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
-.|++|+|+|+|.-|.++|+.|+. |++|+++|........ ... + .+.. ..+ ....+.+.++|+|+
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~-~~~---~-------~~~~-~~~--~~~~~~~~~~d~vV 68 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDI-FEE---L-------YSKN-AIA--ALSDSRWQNLDKIV 68 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHH-HHh---h-------hcCc-eec--cCChhHhhCCCEEE
Confidence 358899999999999999999995 9999999954322100 000 0 0000 011 11234567889887
Q ss_pred Ee--ccC-Chhh-------hcccCHH-HH-hcCCC-CcEEEEcCCCcccCHHHHHHHHHhC
Q 017490 255 CC--LSL-NKQT-------AGIVNKS-FL-SSMKK-GSLLVNIARGGLLDYEAIAHYLECG 302 (370)
Q Consensus 255 l~--lP~-t~~t-------~~li~~~-~l-~~mk~-gailIN~sRg~~vd~~aL~~aL~~g 302 (370)
.. +|. +|.. ..++.+- .+ ..++. ..+=|--+.|..-...-+.+.|+..
T Consensus 69 ~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 129 (454)
T PRK01368 69 LSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN 129 (454)
T ss_pred ECCCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence 75 332 2211 1133332 22 23332 2455555678888888888888863
No 442
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.67 E-value=0.4 Score=48.16 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=35.1
Q ss_pred cccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 172 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 172 ~~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
+....|++|.|+|. |.||+.+++.|...|++|++++|+..
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 45677889999996 99999999999999999999998753
No 443
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=90.66 E-value=0.57 Score=46.02 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=60.2
Q ss_pred ceEEEEec-CchhHHHHHHhccCCC-------EEEEEcCCCccc-cccccccchhhhccccccccccccCCCCCHHHHHh
Q 017490 178 KTVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASH-SQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 248 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~~~G~-------~V~~~dr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~ 248 (370)
.+|+|||. |.+|..+|..+...|. ++..+|...... ..... .++. +... ..........+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a--~Dl~--~~~~-~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVA--MELE--DCAF-PLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHH--HHHh--hccc-cccCCcEEecChHHHhC
Confidence 37999998 9999999998876664 799999854210 00000 0000 0000 00000001135568889
Q ss_pred cCCEEEEeccC--Ch-hhhc-cc--CHH-------HHhcCCC-CcEEEEcCCCcccCHHH
Q 017490 249 KADVVVCCLSL--NK-QTAG-IV--NKS-------FLSSMKK-GSLLVNIARGGLLDYEA 294 (370)
Q Consensus 249 ~aDiV~l~lP~--t~-~t~~-li--~~~-------~l~~mk~-gailIN~sRg~~vd~~a 294 (370)
+||+|+++.-. .+ +||- ++ |.+ .++...| .+++|.++ .++|.-.
T Consensus 79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 99999998543 11 2222 22 122 2333444 89999986 5555433
No 444
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=90.62 E-value=0.49 Score=45.96 Aligned_cols=98 Identities=17% Similarity=0.149 Sum_probs=58.2
Q ss_pred CceEEEEecCchhHHHHHHhc-cCCCEEE-EEcCCCccccccccccchhhhccccccccccccC---CCCCHHHHHh---
Q 017490 177 GKTVFILGFGNIGVELAKRLR-PFGVKII-ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG---CHEDIFEFAS--- 248 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~-~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~ell~--- 248 (370)
..++||||.|.||+..+..+. .-++++. ++|+++.... .....+.+ .+.+++++++
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~g----------------la~A~~~Gi~~~~~~ie~LL~~~~ 67 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDG----------------LARARRLGVATSAEGIDGLLAMPE 67 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHH----------------HHHHHHcCCCcccCCHHHHHhCcC
Confidence 457999999999999776665 3466765 4566543210 01122223 2367888884
Q ss_pred --cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC---CCcc----cCHHHH
Q 017490 249 --KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA---RGGL----LDYEAI 295 (370)
Q Consensus 249 --~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s---Rg~~----vd~~aL 295 (370)
+.|+|+.+.|.....+ -.....+.|..+|+-+ +|++ |+.+++
T Consensus 68 ~~dIDiVf~AT~a~~H~e-----~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~ 118 (302)
T PRK08300 68 FDDIDIVFDATSAGAHVR-----HAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH 118 (302)
T ss_pred CCCCCEEEECCCHHHHHH-----HHHHHHHcCCeEEECCccccCCcccCcCCHHHH
Confidence 5888999987432211 1222346688888776 4444 455544
No 445
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=90.62 E-value=0.46 Score=45.44 Aligned_cols=71 Identities=11% Similarity=0.147 Sum_probs=45.4
Q ss_pred ceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccc-cccCCCCCHHHHHhcCCEEEE
Q 017490 178 KTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV-DEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiV~l 255 (370)
+++.|+|. |.||+.+++.|...|++|++++|+.......... . .... .......+++++++.+|+|+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~--~--------~~~~~~D~~~~~~l~~~~~~~d~vi~ 70 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGL--D--------VEIVEGDLRDPASLRKAVAGCRALFH 70 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccC--C--------ceEEEeeCCCHHHHHHHHhCCCEEEE
Confidence 36889985 9999999999999999999999875431100000 0 0000 001122356677888998877
Q ss_pred ecc
Q 017490 256 CLS 258 (370)
Q Consensus 256 ~lP 258 (370)
+..
T Consensus 71 ~a~ 73 (328)
T TIGR03466 71 VAA 73 (328)
T ss_pred ece
Confidence 654
No 446
>PRK07825 short chain dehydrogenase; Provisional
Probab=90.59 E-value=0.37 Score=45.17 Aligned_cols=38 Identities=32% Similarity=0.389 Sum_probs=33.5
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
++.|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~ 40 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEA 40 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence 467899999996 89999999999999999999988643
No 447
>PRK06523 short chain dehydrogenase; Provisional
Probab=90.53 E-value=0.35 Score=44.84 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=34.9
Q ss_pred ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+++|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 4688999999995 89999999999999999999998653
No 448
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=90.51 E-value=0.8 Score=43.61 Aligned_cols=69 Identities=23% Similarity=0.323 Sum_probs=42.4
Q ss_pred ceEEEEe-cCchhHHHHHHhcc-CCCEEEE-EcCCCccccccccccchhhhccccccccc--cccC--CCCCHHHHHhcC
Q 017490 178 KTVFILG-FGNIGVELAKRLRP-FGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLV--DEKG--CHEDIFEFASKA 250 (370)
Q Consensus 178 ~tvGIiG-lG~IG~~vA~~l~~-~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~l~ell~~a 250 (370)
.+|+|+| +|.||+.+++.+.. -++++.+ +|+...... ..+. .+.. ...+ .+.+++++...+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~-~~~~-----------~~~~~~~~~gv~~~~d~~~l~~~~ 69 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQ-GTDA-----------GELAGIGKVGVPVTDDLEAVETDP 69 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-CCCH-----------HHhcCcCcCCceeeCCHHHhcCCC
Confidence 3799999 69999999998874 6888655 664322100 0000 0000 0011 236788875578
Q ss_pred CEEEEecc
Q 017490 251 DVVVCCLS 258 (370)
Q Consensus 251 DiV~l~lP 258 (370)
|+|+.+.|
T Consensus 70 DvVIdfT~ 77 (266)
T TIGR00036 70 DVLIDFTT 77 (266)
T ss_pred CEEEECCC
Confidence 99999876
No 449
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=90.50 E-value=0.25 Score=43.14 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=25.9
Q ss_pred eEEEEecCchhHHHHHHhc-cCCCEEEEEcC
Q 017490 179 TVFILGFGNIGVELAKRLR-PFGVKIIATKR 208 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~-~~G~~V~~~dr 208 (370)
+|||-|+|+||+.+++.+. .-.++|.+++.
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd 32 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAIND 32 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEE
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEec
Confidence 7999999999999999886 56778888764
No 450
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.43 E-value=0.16 Score=48.46 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=35.9
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 209 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~ 209 (370)
|+......|++++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 44444467899999999999999999999998884 78888865
No 451
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=90.41 E-value=0.52 Score=45.77 Aligned_cols=96 Identities=26% Similarity=0.359 Sum_probs=56.1
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEE
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l 255 (370)
.|.++.|.|.|.+|+.+++.++++|++|++.+++......... + + .+...... .....++.-...|+|+.
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~----g-~~~vi~~~-~~~~~~~~~~~~d~v~~ 238 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----L----G-ADEFIATK-DPEAMKKAAGSLDLIID 238 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----c----C-CcEEecCc-chhhhhhccCCceEEEE
Confidence 5779999999999999999999999999999876433110000 0 0 00000000 00001112245677877
Q ss_pred eccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 256 ~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
+++... .-.+.++.++++..+++++.
T Consensus 239 ~~g~~~-----~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 239 TVSASH-----DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred CCCCcc-----hHHHHHHHhcCCCEEEEEec
Confidence 766421 12345667777777777764
No 452
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.31 E-value=0.55 Score=46.28 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=58.4
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCC---CCHHHHHhcCC
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH---EDIFEFASKAD 251 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aD 251 (370)
..|.+|.|.|.|.+|...++.++..|.+|++.+++.++....... -.++..... ..+.+.....|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~------------~Ga~~~i~~~~~~~~~~~~~~~D 246 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH------------LGADDYLVSSDAAEMQEAADSLD 246 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh------------cCCcEEecCCChHHHHHhcCCCc
Confidence 357899999999999999999999999998887654321000000 000000001 11222333568
Q ss_pred EEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 252 iV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
+++-+++.... + ...++.++++..++.++.
T Consensus 247 ~vid~~g~~~~----~-~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 247 YIIDTVPVFHP----L-EPYLSLLKLDGKLILMGV 276 (357)
T ss_pred EEEECCCchHH----H-HHHHHHhccCCEEEEECC
Confidence 88888763221 1 245677889999988874
No 453
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=90.27 E-value=0.29 Score=46.37 Aligned_cols=51 Identities=24% Similarity=0.286 Sum_probs=40.0
Q ss_pred HHHHHHhcccCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 158 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
|.++++- |+....+.|...+|.|+|+|.+|.++|+.|...|. ++..+|...
T Consensus 9 YsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~ 60 (287)
T PTZ00245 9 YDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL 60 (287)
T ss_pred HhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCc
Confidence 4444433 66555567999999999999999999999998888 688888653
No 454
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=90.22 E-value=0.67 Score=38.17 Aligned_cols=98 Identities=19% Similarity=0.194 Sum_probs=67.0
Q ss_pred ceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEec
Q 017490 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCL 257 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~l 257 (370)
|+|.|+|-|.|+..+++.++.+|.+++..+..++. ...-...||-+ .++
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~------------------------------~s~~~~~ad~~-~~~ 51 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDT------------------------------VSTHVDMADEA-YFE 51 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGT------------------------------TGHHHHHSSEE-EEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhc------------------------------ccccccccccc-eec
Confidence 58999999999999999999999998776654322 11123456766 445
Q ss_pred cCChhhhcccCHHHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHhCCceE
Q 017490 258 SLNKQTAGIVNKSFLSS--MKKGSLLVNIARGGLLDYEAIAHYLECGHLGG 306 (370)
Q Consensus 258 P~t~~t~~li~~~~l~~--mk~gailIN~sRg~~vd~~aL~~aL~~g~i~g 306 (370)
|..+..+..++.+.+-. -+.|+..+=-+-|.+-...+|.+++.+..+..
T Consensus 52 ~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~~~fa~~~~~~gi~f 102 (110)
T PF00289_consen 52 PPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSENAEFAEACEDAGIIF 102 (110)
T ss_dssp ESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTHHHHHHHHHHTT-EE
T ss_pred CcchhhhhhccHHHHhhHhhhhcCcccccccchhHHHHHHHHHHHHCCCEE
Confidence 53444445555443221 24488888889999999999999998777653
No 455
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=90.20 E-value=0.89 Score=44.02 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=32.4
Q ss_pred cCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.|.+|.|.|.|.+|+.+++.+++.|.+|++.+++..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~ 198 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSD 198 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChH
Confidence 578999999999999999999999999999987643
No 456
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.19 E-value=2.8 Score=42.19 Aligned_cols=93 Identities=17% Similarity=0.302 Sum_probs=64.8
Q ss_pred CcccccCceEEEEec---Cch-------hHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC-C
Q 017490 171 TGETLLGKTVFILGF---GNI-------GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-C 239 (370)
Q Consensus 171 ~~~~l~g~tvGIiGl---G~I-------G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 239 (370)
.++.++|.+|+++|+ |.+ ...+.+.+...|.+|.+||++....+. .....+ +
T Consensus 316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~-----------------~~~~~~~~ 378 (436)
T COG0677 316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPT-----------------REDGEGVT 378 (436)
T ss_pred cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchh-----------------hhhccccc
Confidence 467899999999998 554 356788999999999999998764210 001111 2
Q ss_pred CCCHHHHHhcCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEc
Q 017490 240 HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNI 284 (370)
Q Consensus 240 ~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~ 284 (370)
...+++.++.+|+|++.+-- +-..-++.+.+..+ ..+++++
T Consensus 379 ~~~~e~al~~~D~vVi~tDH--~~fk~id~~~i~~~--~~vivDt 419 (436)
T COG0677 379 LAILEEALKDADAVVIATDH--SEFKEIDYEAIGKE--AKVIVDT 419 (436)
T ss_pred hhhHHHHhccCCEEEEEecc--HHhhcCCHHHhccC--CcEEEEC
Confidence 46789999999999998531 11124677777655 6677776
No 457
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=90.16 E-value=0.93 Score=47.35 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=64.7
Q ss_pred cccCceEEEEec---CchhHHHHHHhccCC-CEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHH
Q 017490 174 TLLGKTVFILGF---GNIGVELAKRLRPFG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFE 245 (370)
Q Consensus 174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~e 245 (370)
.+.|++|+++|= |++..+++..+..+| ++|....+..-.. +.. + .+.+.+.+ ...++++
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~--p~~----~-------~~~a~~~G~~v~i~~d~~e 237 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAM--PEH----Y-------VEKMKKNGFEVRIFSSIEE 237 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccC--CHH----H-------HHHHHHcCCeEEEEcCHHH
Confidence 478999999997 688999999999998 9998877532210 000 0 00011111 2368999
Q ss_pred HHhcCCEE--EE-------eccCC-----hh--hhcccCHHHHhcCCCCcEEEEcC
Q 017490 246 FASKADVV--VC-------CLSLN-----KQ--TAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 246 ll~~aDiV--~l-------~lP~t-----~~--t~~li~~~~l~~mk~gailIN~s 285 (370)
.++++|+. .. .++.. .. -...++++.++.+|+++++.-+.
T Consensus 238 av~~AD~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 238 YLSQKDVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred HhccCCccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 99999952 23 12111 11 13456889999999999998875
No 458
>PRK06179 short chain dehydrogenase; Provisional
Probab=90.16 E-value=0.43 Score=44.61 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=31.9
Q ss_pred cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
.++++.|.|. |.||+.+|+.|...|++|++.+|+...
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~ 40 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPAR 40 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence 3678999995 899999999999999999999987543
No 459
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=90.13 E-value=1 Score=44.38 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=62.9
Q ss_pred cccCceEEEEecC--chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCCCHHHHH
Q 017490 174 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHEDIFEFA 247 (370)
Q Consensus 174 ~l~g~tvGIiGlG--~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ell 247 (370)
.+.|++|++||-+ ++.++++..+..+|++|.+..|..-... .. +. +...+.....+ ...++++.+
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~--~~----~~---~~~~~~~~~~g~~~~~~~d~~~a~ 223 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPE--AS----LV---AECSALAQKHGGKITLTEDIAAGV 223 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCc--HH----HH---HHHHHHHHHcCCeEEEEcCHHHHh
Confidence 4789999999975 7899999999999999998876431100 00 00 00000111111 237899999
Q ss_pred hcCCEEEEec------cCC--hh-----hhcccCHHHHhcC-CCCcEEEEc
Q 017490 248 SKADVVVCCL------SLN--KQ-----TAGIVNKSFLSSM-KKGSLLVNI 284 (370)
Q Consensus 248 ~~aDiV~l~l------P~t--~~-----t~~li~~~~l~~m-k~gailIN~ 284 (370)
+.+|+|..-. ... ++ ...-++++.++.. |+++++.-+
T Consensus 224 ~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHc 274 (334)
T PRK12562 224 KGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHC 274 (334)
T ss_pred CCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECC
Confidence 9999998753 100 01 1234567777764 677777766
No 460
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=90.08 E-value=0.59 Score=45.30 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=55.8
Q ss_pred CceEEEEec-CchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHH-----hc
Q 017490 177 GKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA-----SK 249 (370)
Q Consensus 177 g~tvGIiGl-G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~ 249 (370)
|.+|.|.|. |.+|...++.++.+|+ +|++.+++.++....... + + ++..+.. ...++.+.+ ..
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---l----G-a~~vi~~--~~~~~~~~i~~~~~~g 224 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---L----G-FDAAINY--KTDNVAERLRELCPEG 224 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---c----C-CcEEEEC--CCCCHHHHHHHHCCCC
Confidence 489999998 9999999999999999 899987764331100000 0 0 0000000 112333322 24
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
.|+|+-++... . + ...++.++++..+|.++
T Consensus 225 vd~vid~~g~~-~----~-~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 225 VDVYFDNVGGE-I----S-DTVISQMNENSHIILCG 254 (345)
T ss_pred ceEEEECCCcH-H----H-HHHHHHhccCCEEEEEe
Confidence 68887766521 1 2 45677888888888876
No 461
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.02 E-value=0.8 Score=42.77 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=33.0
Q ss_pred cccCceEEEEec---CchhHHHHHHhccCCCEEEEEcCCC
Q 017490 174 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 174 ~l~g~tvGIiGl---G~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
.+.||++.|.|. +.||+++|+.|...|++|+..+|+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 478999999996 7999999999999999999988753
No 462
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=90.02 E-value=0.7 Score=44.55 Aligned_cols=36 Identities=36% Similarity=0.252 Sum_probs=31.2
Q ss_pred cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.||++.|.|. |.||+.+++.|...|++|++..|+..
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~ 40 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPK 40 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence 3789999995 99999999999999999988776643
No 463
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.01 E-value=0.92 Score=44.93 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=25.5
Q ss_pred ceEEEEe-cCchhHHHHHHhccCC-CEEEEEcC
Q 017490 178 KTVFILG-FGNIGVELAKRLRPFG-VKIIATKR 208 (370)
Q Consensus 178 ~tvGIiG-lG~IG~~vA~~l~~~G-~~V~~~dr 208 (370)
.+|+|+| .|.+|+.+++.|..+. +++.++.+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~ 36 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAA 36 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence 5899998 8999999999998654 48887733
No 464
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.99 E-value=0.65 Score=45.36 Aligned_cols=103 Identities=18% Similarity=0.120 Sum_probs=59.9
Q ss_pred ceEEEEec-CchhHHHHHHhccCCC--EEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 178 KTVFILGF-GNIGVELAKRLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
.+|+|||. |.+|..+|..+...|. ++..+|.. ...-...+. . +..............++.+.++.||+|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL----~--~~~~~~~i~~~~~~~~~y~~~~daDivv 73 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADL----S--HINTPAKVTGYLGPEELKKALKGADVVV 73 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHh----H--hCCCcceEEEecCCCchHHhcCCCCEEE
Confidence 37999999 9999999999886664 79999987 321111111 0 0000000000001123567889999999
Q ss_pred EeccC--Ch-hhhc-cc--CHH-------HHhcCCCCcEEEEcCCC
Q 017490 255 CCLSL--NK-QTAG-IV--NKS-------FLSSMKKGSLLVNIARG 287 (370)
Q Consensus 255 l~lP~--t~-~t~~-li--~~~-------~l~~mk~gailIN~sRg 287 (370)
++.-. .| ++|- ++ |.+ .+..-.|.+++|+++..
T Consensus 74 itaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 74 IPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 98543 22 2222 22 222 34445789999999765
No 465
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.98 E-value=0.48 Score=45.70 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=57.1
Q ss_pred cCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh-----c
Q 017490 176 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS-----K 249 (370)
Q Consensus 176 ~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~ 249 (370)
.|.+|.|.| .|.+|...++.++..|++|++.+++.++....... + .+..+.. ....++.+.+. .
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l--------G-a~~vi~~-~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL--------G-FDVAFNY-KTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc--------C-CCEEEec-cccccHHHHHHHhCCCC
Confidence 578999999 59999999999999999999887764331110000 0 0000000 00112333221 3
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
.|+|+-++.. +. + ...++.++++..++..+.
T Consensus 208 vdvv~d~~G~-~~----~-~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 208 YDCYFDNVGG-EF----S-NTVIGQMKKFGRIAICGA 238 (325)
T ss_pred eEEEEECCCH-HH----H-HHHHHHhCcCcEEEEecc
Confidence 6777776542 11 2 456788899999988875
No 466
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.96 E-value=0.28 Score=45.87 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=33.2
Q ss_pred ccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 173 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 173 ~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
..|++++|.|+|+|.+|..+|+.|...|. +++.+|...
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 45788999999999999999999998888 788888653
No 467
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=89.96 E-value=0.56 Score=46.32 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=50.7
Q ss_pred cCceEEEEec-CchhHHHHHHhcc--CC-CEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHH-HhcC
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRP--FG-VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEF-ASKA 250 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~--~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~a 250 (370)
.+.+|+|||. |.+|+++.+.|.. +- .++..+......... +. +........++++. +.++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~-------~~--------~~~~~~~v~~~~~~~~~~~ 67 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGET-------LR--------FGGKSVTVQDAAEFDWSQA 67 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCce-------EE--------ECCcceEEEeCchhhccCC
Confidence 4668999996 9999999999987 43 355544322111000 00 00000011234443 3689
Q ss_pred CEEEEeccCChhhhcccCHHHHhc-CCCCcEEEEcC
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIA 285 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~-mk~gailIN~s 285 (370)
|++++++|... . ++.... .+.|..+||.|
T Consensus 68 Dvvf~a~p~~~-s-----~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 68 QLAFFVAGREA-S-----AAYAEEATNAGCLVIDSS 97 (336)
T ss_pred CEEEECCCHHH-H-----HHHHHHHHHCCCEEEECC
Confidence 99999998542 2 222222 24688888888
No 468
>PRK06057 short chain dehydrogenase; Provisional
Probab=89.94 E-value=0.39 Score=44.51 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=34.3
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.|+++.|+|. |.||+.+++.+...|++|++++|+..
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~ 42 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE 42 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999997 99999999999999999999988654
No 469
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.91 E-value=0.55 Score=46.19 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=32.2
Q ss_pred cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.|.+|.|.|. |.+|...++.++.+|++|++.+++..
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~ 194 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQ 194 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 5889999999 99999999999999999999876543
No 470
>PRK10537 voltage-gated potassium channel; Provisional
Probab=89.90 E-value=1.6 Score=43.98 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=29.2
Q ss_pred CceEEEEecCchhHHHHHHhccCCCEEEEEcCC
Q 017490 177 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 209 (370)
Q Consensus 177 g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~ 209 (370)
...+-|+|+|.+|+.+++.|++.|.+|.+.+.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc
Confidence 456889999999999999999999999888864
No 471
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=89.82 E-value=0.41 Score=43.97 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=33.5
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCC
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 210 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~ 210 (370)
.+.||++.|.|. |.||+.+|+.|...|++|++.+|+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 378999999997 8999999999999999999998864
No 472
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=89.77 E-value=0.68 Score=45.46 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=59.4
Q ss_pred eEEEEec-CchhHHHHHHhccCCC-------EEEEEcCCCccccccccccchhhhcccccccccccc------C-CCCCH
Q 017490 179 TVFILGF-GNIGVELAKRLRPFGV-------KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK------G-CHEDI 243 (370)
Q Consensus 179 tvGIiGl-G~IG~~vA~~l~~~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~l 243 (370)
+|+|+|. |.+|..+|..|...|. ++..+|+....... .. ...++.+.. . ...+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a-~g----------~~~Dl~d~~~~~~~~~~~~~~~ 69 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVL-EG----------VVMELMDCAFPLLDGVVPTHDP 69 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccccc-ce----------eEeehhcccchhcCceeccCCh
Confidence 5899999 9999999998876444 58999985432100 00 001111111 0 11255
Q ss_pred HHHHhcCCEEEEeccC--Ch-hhh-ccc--CH-------HHHhcC-CCCcEEEEcCCCcccCHHH
Q 017490 244 FEFASKADVVVCCLSL--NK-QTA-GIV--NK-------SFLSSM-KKGSLLVNIARGGLLDYEA 294 (370)
Q Consensus 244 ~ell~~aDiV~l~lP~--t~-~t~-~li--~~-------~~l~~m-k~gailIN~sRg~~vd~~a 294 (370)
.+.+++||+|+++.-. .+ +|+ .++ |. ..++.. +|.+++|.++ .++|.-.
T Consensus 70 ~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 70 AVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred HHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 6889999999987543 21 121 122 11 134445 5888999887 5555544
No 473
>PRK06841 short chain dehydrogenase; Provisional
Probab=89.74 E-value=0.42 Score=44.11 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=34.3
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED 50 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 578999999995 99999999999999999999998653
No 474
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=89.70 E-value=0.35 Score=48.98 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=67.3
Q ss_pred eEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEEEe--
Q 017490 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCC-- 256 (370)
Q Consensus 179 tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~-- 256 (370)
++.|+|+|.+|.++|+.|+..|++|.++|............ .+.. ...+.-... .+ .+.+..+|+|+..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~--~~~~-----~~gi~~~~g-~~-~~~~~~~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMG--QLRL-----NEGSVLHTG-LH-LEDLNNADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHH--HHhh-----ccCcEEEec-Cc-hHHhccCCEEEECCC
Confidence 37899999999999999999999999999764431110000 0000 000000001 22 3456789988765
Q ss_pred ccC-Chhhh-------cccCH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHhCC
Q 017490 257 LSL-NKQTA-------GIVNK-SFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECGH 303 (370)
Q Consensus 257 lP~-t~~t~-------~li~~-~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g~ 303 (370)
+|. +|+.. .++.+ +.+.. ++.-.+-|.-+.|..-...-+...|+...
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 332 23221 12332 23322 34446666667899888888888888654
No 475
>PRK06398 aldose dehydrogenase; Validated
Probab=89.58 E-value=0.47 Score=44.31 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=34.1
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
+++||++.|.|. |.||+++|+.|...|++|+..+|+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 578999999995 79999999999999999999988654
No 476
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.54 E-value=0.43 Score=43.49 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=34.1
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
+++|+++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 477999999997 78999999999999999999998754
No 477
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.52 E-value=0.51 Score=45.36 Aligned_cols=97 Identities=24% Similarity=0.334 Sum_probs=57.8
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
-.|.+|.|+|.|.+|+.+++.++.+|++|++.+++......... .+ ........ ........-...|+++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~--------~g-~~~~~~~~-~~~~~~~~~~~~d~vi 230 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK--------LG-ADEVVDSG-AELDEQAAAGGADVIL 230 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------hC-CcEEeccC-CcchHHhccCCCCEEE
Confidence 34678999999999999999999999999998876543110000 00 00000000 0001111113578888
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
-++.... ...+.+..|+++..+|+++.
T Consensus 231 ~~~~~~~-----~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 231 VTVVSGA-----AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred ECCCcHH-----HHHHHHHhcccCCEEEEECC
Confidence 7754321 12456778999989998864
No 478
>PRK07774 short chain dehydrogenase; Provisional
Probab=89.50 E-value=0.46 Score=43.68 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=34.1
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.|+++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~ 41 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAE 41 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999997 99999999999999999999998753
No 479
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=89.47 E-value=0.45 Score=43.51 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=34.4
Q ss_pred ccccCceEEEEe-cCchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 173 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 173 ~~l~g~tvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
+.+.++++.|.| .|.+|+.+++.|...|++|++.+|+..
T Consensus 2 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~ 41 (251)
T PRK12826 2 RDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGD 41 (251)
T ss_pred CCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 346789999999 699999999999999999999998743
No 480
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=89.29 E-value=0.14 Score=42.07 Aligned_cols=102 Identities=24% Similarity=0.384 Sum_probs=57.1
Q ss_pred ecCchhHHHHHHhccC----CCEEEE-EcCCCccccccccccchhhhccccccccccccCCCCCHHHHHh--cCCEEEEe
Q 017490 184 GFGNIGVELAKRLRPF----GVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS--KADVVVCC 256 (370)
Q Consensus 184 GlG~IG~~vA~~l~~~----G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV~l~ 256 (370)
|+|.||+.+++.+... +++|.+ ++++ ....... ...........++++++. ..|+|+=|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~dvvVE~ 66 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDW-------------AASFPDEAFTTDLEELIDDPDIDVVVEC 66 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTH-------------HHHHTHSCEESSHHHHHTHTT-SEEEE-
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhh-------------hhhcccccccCCHHHHhcCcCCCEEEEC
Confidence 8999999999999764 677654 5555 1100000 001111113468899988 89999998
Q ss_pred ccCChhhhcccCHHHHhcCCCCcEEEEcCCCccc---CHHHHHHHHHhCCc
Q 017490 257 LSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL---DYEAIAHYLECGHL 304 (370)
Q Consensus 257 lP~t~~t~~li~~~~l~~mk~gailIN~sRg~~v---d~~aL~~aL~~g~i 304 (370)
.+..+.. .-..+.|+.|.-+|-.+-+.+. ..+.|.++.+++..
T Consensus 67 t~~~~~~-----~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~ 112 (117)
T PF03447_consen 67 TSSEAVA-----EYYEKALERGKHVVTANKGALADEALYEELREAARKNGV 112 (117)
T ss_dssp SSCHHHH-----HHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-
T ss_pred CCchHHH-----HHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCC
Confidence 5543322 2234446788889988888877 33445555555443
No 481
>PRK07576 short chain dehydrogenase; Provisional
Probab=89.28 E-value=0.47 Score=44.45 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=35.1
Q ss_pred ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.++.++++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~ 44 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQE 44 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4688999999997 89999999999999999999998754
No 482
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=89.26 E-value=1 Score=45.43 Aligned_cols=74 Identities=15% Similarity=0.124 Sum_probs=47.5
Q ss_pred cccCceEEEEec-----C---chhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccccC----CCC
Q 017490 174 TLLGKTVFILGF-----G---NIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG----CHE 241 (370)
Q Consensus 174 ~l~g~tvGIiGl-----G---~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 241 (370)
.+.|++|+|+|- | ++.++++..+..+|++|.+..+..-...+.. . ++ +.+...+.+ ...
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i-~--~~------a~~~~~~~G~~i~~~~ 254 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEV-V--EV------AKKNAKASGGSFRQVN 254 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHH-H--HH------HHHHHHHcCCeEEEEc
Confidence 478999999985 5 4568889988999999999876421100000 0 00 000011111 247
Q ss_pred CHHHHHhcCCEEEEe
Q 017490 242 DIFEFASKADVVVCC 256 (370)
Q Consensus 242 ~l~ell~~aDiV~l~ 256 (370)
++++.++.+|+|..-
T Consensus 255 d~~eav~~aDvVYtd 269 (395)
T PRK07200 255 SMEEAFKDADIVYPK 269 (395)
T ss_pred CHHHHhCCCCEEEEc
Confidence 899999999999875
No 483
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.14 E-value=0.81 Score=44.85 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=34.8
Q ss_pred ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
..+.++++.|.|. |.||+++|+.+...|++|+..+|+..
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~ 42 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEE 42 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 4578999999997 89999999999999999999988643
No 484
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=89.14 E-value=0.24 Score=47.85 Aligned_cols=44 Identities=34% Similarity=0.455 Sum_probs=36.9
Q ss_pred cCCCCcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCC
Q 017490 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 210 (370)
Q Consensus 167 ~~~~~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~ 210 (370)
|+....+.|..++|.|+|+|.+|.++|+.|...|. +|..+|...
T Consensus 9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 44444567899999999999999999999998888 588998754
No 485
>PLN02827 Alcohol dehydrogenase-like
Probab=89.08 E-value=0.98 Score=44.95 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=31.8
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCc
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWA 211 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~ 211 (370)
-.|.+|.|+|.|.+|..+++.++.+|++ |++.+++..
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~ 229 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPE 229 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH
Confidence 3588999999999999999999999994 888876543
No 486
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=89.06 E-value=0.36 Score=51.34 Aligned_cols=61 Identities=28% Similarity=0.377 Sum_probs=44.4
Q ss_pred CchhHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC---CcccccCceEEEEecCchhHHHHHHhccCCC-EEEEEcCC
Q 017490 136 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 209 (370)
Q Consensus 136 na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~---~~~~l~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~ 209 (370)
+....||-++-+=|-+. +|... ....|++.+|.|+|+|.+|..+|+.|.+.|. +++.+|..
T Consensus 307 dP~~la~~avdlnlkLm-------------kWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 307 DPKRLAERSVDLNLKLM-------------KWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred CHHHHHHHHHHHHHHHH-------------hhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 34556666665544444 34322 2357899999999999999999999999998 67777753
No 487
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=89.05 E-value=1.1 Score=44.43 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=49.5
Q ss_pred CceEEEEec-CchhHHHHHHhc-cCCCE---EEEEcCCCccccccccccchhhhccccccccccccC-CCCCHHHHHhcC
Q 017490 177 GKTVFILGF-GNIGVELAKRLR-PFGVK---IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG-CHEDIFEFASKA 250 (370)
Q Consensus 177 g~tvGIiGl-G~IG~~vA~~l~-~~G~~---V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~a 250 (370)
+.+|||||. |.+|+++.+.|. .-.+. +..+......... +.+.. .... ...+.++ +.++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~-------~~~~~-------~~l~v~~~~~~~-~~~~ 69 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKT-------VQFKG-------REIIIQEAKINS-FEGV 69 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCC-------eeeCC-------cceEEEeCCHHH-hcCC
Confidence 468999996 999999999998 46666 4333322111000 00000 0000 1123333 4789
Q ss_pred CEEEEeccCChhhhcccCHHHHhc-CCCCcEEEEcC
Q 017490 251 DVVVCCLSLNKQTAGIVNKSFLSS-MKKGSLLVNIA 285 (370)
Q Consensus 251 DiV~l~lP~t~~t~~li~~~~l~~-mk~gailIN~s 285 (370)
|+++.++|.. ..+.+ ... .+.|+.+|+.|
T Consensus 70 Divf~a~~~~-~s~~~-----~~~~~~~G~~VID~S 99 (347)
T PRK06728 70 DIAFFSAGGE-VSRQF-----VNQAVSSGAIVIDNT 99 (347)
T ss_pred CEEEECCChH-HHHHH-----HHHHHHCCCEEEECc
Confidence 9999999854 22222 222 25678888887
No 488
>PRK05717 oxidoreductase; Validated
Probab=89.04 E-value=0.54 Score=43.56 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=34.7
Q ss_pred ccccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 173 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 173 ~~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
..+.||++.|.|. |.||+.+|+.|...|++|+..+++..
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~ 45 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRE 45 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 4678999999995 99999999999999999999987643
No 489
>PRK06172 short chain dehydrogenase; Provisional
Probab=89.02 E-value=0.44 Score=44.03 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=34.3
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.||++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 42 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA 42 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999996 89999999999999999999998754
No 490
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=89.02 E-value=0.65 Score=45.00 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=48.4
Q ss_pred ccCceEEEEe---cCchhHHHHHHhccCCCEEEEEcCCCccccccccccchhhhccccccccccc--cC-CCCCHHHHHh
Q 017490 175 LLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE--KG-CHEDIFEFAS 248 (370)
Q Consensus 175 l~g~tvGIiG---lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~ell~ 248 (370)
+.|++|+|+| +|+..++.++.|+.||.+|..+.|..-.. + .....++... .. .....++.++
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~--p----------~~i~~~l~~~~~~~~~~~~~e~~i~ 223 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLP--P----------EYILEELEEKGGVVVEHDSDEEVIE 223 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCC--c----------hhHHHHHhhcCceEEEecchhhhhc
Confidence 8899999999 89999999999999999999987643221 0 0011111111 11 2345666999
Q ss_pred cCCEEEEe
Q 017490 249 KADVVVCC 256 (370)
Q Consensus 249 ~aDiV~l~ 256 (370)
++||+.+.
T Consensus 224 ~~DVl~~l 231 (316)
T COG0540 224 EADVLYML 231 (316)
T ss_pred cCCEEEee
Confidence 99998653
No 491
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=88.96 E-value=0.44 Score=47.09 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=48.1
Q ss_pred eEEEEe-cCchhHHHHHHhccCCCEE---EEEcCCCccccccccccchhhhccccccccccccCCCCCHHHHHhcCCEEE
Q 017490 179 TVFILG-FGNIGVELAKRLRPFGVKI---IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVV 254 (370)
Q Consensus 179 tvGIiG-lG~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV~ 254 (370)
+|+|+| .|.+|+++++.|...|+.+ .++.+....... +.. ....-.....+. +.+..+|+|+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~-------~~~------~~~~~~~~~~~~-~~~~~~D~v~ 66 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRK-------VTF------KGKELEVNEAKI-ESFEGIDIAL 66 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCe-------eee------CCeeEEEEeCCh-HHhcCCCEEE
Confidence 589999 6999999999998866653 333332221100 000 000000001122 3357899999
Q ss_pred EeccCChhhhcccCHHHHhcCCCCcEEEEcC
Q 017490 255 CCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285 (370)
Q Consensus 255 l~lP~t~~t~~li~~~~l~~mk~gailIN~s 285 (370)
.|+|... +..+. ... .+.|+++|+.|
T Consensus 67 ~a~g~~~-s~~~a-~~~---~~~G~~VID~s 92 (339)
T TIGR01296 67 FSAGGSV-SKEFA-PKA---AKCGAIVIDNT 92 (339)
T ss_pred ECCCHHH-HHHHH-HHH---HHCCCEEEECC
Confidence 9998542 22221 111 34678888777
No 492
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=88.91 E-value=1.3 Score=43.16 Aligned_cols=95 Identities=25% Similarity=0.376 Sum_probs=58.8
Q ss_pred cCceEEEEecCchhHHHHHHhccCCC-EEEEEcCCCccccccccccchhhhccccccccccccCCCCCH----HHHHh--
Q 017490 176 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI----FEFAS-- 248 (370)
Q Consensus 176 ~g~tvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~-- 248 (370)
.|.+|.|.|.|.+|+..++.++..|+ +|++.+++..+...... + + ++..+.. ...++ .+...
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~----g-a~~~i~~--~~~~~~~~l~~~~~~~ 240 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----L----G-ATIVLDP--TEVDVVAEVRKLTGGG 240 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----h----C-CCEEECC--CccCHHHHHHHHhCCC
Confidence 57899999999999999999999999 89988875443110000 0 0 0001110 01122 22332
Q ss_pred cCCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCC
Q 017490 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIAR 286 (370)
Q Consensus 249 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sR 286 (370)
..|+|+-+...... + ...++.++++..++.++.
T Consensus 241 ~~d~vid~~g~~~~----~-~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 241 GVDVSFDCAGVQAT----L-DTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCEEEECCCCHHH----H-HHHHHhccCCCEEEEEcc
Confidence 38999888653221 1 356777899999998875
No 493
>PRK07831 short chain dehydrogenase; Provisional
Probab=88.91 E-value=0.44 Score=44.39 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=33.4
Q ss_pred cccCceEEEEec-C-chhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G-~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.|+++.|.|. | .||+.+|+.+...|++|++.+++..
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~ 53 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHER 53 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 467899999997 6 6999999999999999999987654
No 494
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=88.82 E-value=1.3 Score=45.42 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=65.9
Q ss_pred ceEEEEec-CchhHHHHHHhccC-------CC--EEEEEcCCCccccccccccchhhhcccccccccccc------CC-C
Q 017490 178 KTVFILGF-GNIGVELAKRLRPF-------GV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK------GC-H 240 (370)
Q Consensus 178 ~tvGIiGl-G~IG~~vA~~l~~~-------G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~ 240 (370)
.+|+|||. |.+|..+|-.+... |. +++.+|++.+...-.. .++.+.. .. .
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~a-------------mDL~daa~~~~~~v~i~ 167 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVA-------------MELEDSLYPLLREVSIG 167 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHH-------------HHHHHhhhhhcCceEEe
Confidence 48999999 99999999988754 44 7888998765421110 1111111 00 1
Q ss_pred CCHHHHHhcCCEEEEeccC--Ch-hhhc-cc--CH-------HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHhC
Q 017490 241 EDIFEFASKADVVVCCLSL--NK-QTAG-IV--NK-------SFLSS-MKKGSLLVNIARGGLLDYEAIAHYLECG 302 (370)
Q Consensus 241 ~~l~ell~~aDiV~l~lP~--t~-~t~~-li--~~-------~~l~~-mk~gailIN~sRg~~vd~~aL~~aL~~g 302 (370)
.+..+.+++||+|++..-. .+ ++|- ++ |. ..+.. -.+.+++|.++ ..+|.-..+-.=.+|
T Consensus 168 ~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~sg 241 (444)
T PLN00112 168 IDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNAP 241 (444)
T ss_pred cCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHcC
Confidence 2445788999999998543 22 1111 22 11 13444 47899999997 566666655544443
No 495
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.75 E-value=0.73 Score=44.71 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=32.1
Q ss_pred cCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 176 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 176 ~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.|.+|.|.|. |.+|+.+++.++.+|++|++..++..
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~ 187 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDE 187 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5889999998 99999999999999999998876643
No 496
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=88.74 E-value=0.41 Score=46.84 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=27.5
Q ss_pred ceEEEEecCchhHHHHHHhccCC--CEEEEEcC
Q 017490 178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKR 208 (370)
Q Consensus 178 ~tvGIiGlG~IG~~vA~~l~~~G--~~V~~~dr 208 (370)
.+|||=|||+||+.+++.+...+ |+|++++.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd 34 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAIND 34 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEec
Confidence 37999999999999999998764 99999876
No 497
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=88.62 E-value=0.45 Score=45.76 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=57.9
Q ss_pred ccCceEEEEecCchhHHHHHHhccCCCE-EEEEcCCCccccccccccchhhhccccccccccccCCCCCHH--HH--Hhc
Q 017490 175 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF--EF--ASK 249 (370)
Q Consensus 175 l~g~tvGIiGlG~IG~~vA~~l~~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~ 249 (370)
..|.+|.|+|.|.+|+.+++.+++.|++ |++.+++.+....... + + ....+.. ...+.. .. -..
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~----g-~~~~~~~--~~~~~~~~~~~~~~~ 226 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----L----G-ATETVDP--SREDPEAQKEDNPYG 226 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----h----C-CeEEecC--CCCCHHHHHHhcCCC
Confidence 3578999999999999999999999998 8888776433110000 0 0 0000000 001111 11 135
Q ss_pred CCEEEEeccCChhhhcccCHHHHhcCCCCcEEEEcCCCc
Q 017490 250 ADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288 (370)
Q Consensus 250 aDiV~l~lP~t~~t~~li~~~~l~~mk~gailIN~sRg~ 288 (370)
.|+++.+++... .-...++.|+++..+++++...
T Consensus 227 vd~v~~~~~~~~-----~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 227 FDVVIEATGVPK-----TLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred CcEEEECCCChH-----HHHHHHHHHhcCCEEEEEecCC
Confidence 788887765321 1234567788888888887654
No 498
>PRK09186 flagellin modification protein A; Provisional
Probab=88.58 E-value=0.49 Score=43.66 Aligned_cols=37 Identities=38% Similarity=0.455 Sum_probs=33.2
Q ss_pred ccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 175 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 175 l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
++||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~ 39 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKE 39 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChH
Confidence 57899999996 89999999999999999999988654
No 499
>PRK08862 short chain dehydrogenase; Provisional
Probab=88.54 E-value=0.5 Score=43.55 Aligned_cols=39 Identities=13% Similarity=0.312 Sum_probs=34.0
Q ss_pred cccCceEEEEecC-chhHHHHHHhccCCCEEEEEcCCCcc
Q 017490 174 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS 212 (370)
Q Consensus 174 ~l~g~tvGIiGlG-~IG~~vA~~l~~~G~~V~~~dr~~~~ 212 (370)
.++||++.|.|.+ .||+++|+.|...|++|+..+|+.+.
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~ 41 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSA 41 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 4689999999975 59999999999999999999887543
No 500
>PRK08339 short chain dehydrogenase; Provisional
Probab=88.52 E-value=0.58 Score=43.92 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.9
Q ss_pred cccCceEEEEec-CchhHHHHHHhccCCCEEEEEcCCCc
Q 017490 174 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 211 (370)
Q Consensus 174 ~l~g~tvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~ 211 (370)
.+.||++.|.|. |.||+++|+.|...|++|++.+|+..
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~ 43 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEE 43 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999996 68999999999999999999998743
Done!