RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 017490
(370 letters)
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 207 bits (528), Expect = 2e-64
Identities = 67/330 (20%), Positives = 119/330 (36%), Gaps = 28/330 (8%)
Query: 37 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCIS 96
+ VL P + ++ V +D + L +
Sbjct: 2 SLVLMAQATKPEQLQQLQTTYPDWTFKDAAAVTAADYDQIEV----MYGNHPLLKTILAR 57
Query: 97 RANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 156
NQ+K + G++ + + A G+ VA G +A + +E + ML ++R +
Sbjct: 58 PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSG---IHADAISESVLAAMLSVVRGYH 114
Query: 157 EMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 214
+ + T TL G+ + I G G IG LA + G+ +I +
Sbjct: 115 AAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTT----- 169
Query: 215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 274
G D E + + A+ +V L L T + +
Sbjct: 170 -------------GHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQ 216
Query: 275 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 334
K+ +L+NI RG +D A+ L+ L +DV EP + P+ + +VLITPH
Sbjct: 217 TKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPH 276
Query: 335 VGGVTEHSYRSMAKVVGD-VALQLHAGTPL 363
+ G H ++ + A + GT +
Sbjct: 277 ISGQIAHFRATVFPIFAANFAQFVKDGTLV 306
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 197 bits (503), Expect = 4e-61
Identities = 62/297 (20%), Positives = 112/297 (37%), Gaps = 37/297 (12%)
Query: 66 DVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIK 125
+V D+ +V A R+ + +++ ++K I GL+ + + +
Sbjct: 22 KIVRGGDLGNVEA------ALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVT 74
Query: 126 VARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFIL 183
VA G NA + AE + L+L ++ + +++ V + G+ V +L
Sbjct: 75 VAGNAG---SNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPL-IQGEKVAVL 130
Query: 184 GFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDI 243
G G IG + K L G ++ R+ S +++
Sbjct: 131 GLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNS---------LEEA---------- 171
Query: 244 FEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGH 303
+A VC L LNK T G+V L+ M + ++ VN+ R +LD + + L+
Sbjct: 172 ---LREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERP 228
Query: 304 LGGLGIDVAW-TEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHA 359
DV W F + NV+ TP V G + R ++V + L
Sbjct: 229 QFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGY-GNERVWRQMVMEAVRNLIT 284
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 197 bits (502), Expect = 3e-60
Identities = 82/302 (27%), Positives = 131/302 (43%), Gaps = 35/302 (11%)
Query: 63 IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 114
Q V + PD I + H+ + + + I +A +KL++ G+G + +
Sbjct: 41 HQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHI 100
Query: 115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 170
D+ AA G+ VA + G N S AE + +L L+R + +
Sbjct: 101 DLQAAAAAGLTVAEVTG---SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAY 157
Query: 171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 230
L GKT+ +G G IG L +RL+PFG ++ R +
Sbjct: 158 RAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMA------------------ 199
Query: 231 DDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288
+L E G ED+ E K DV+V + L ++T G+ NK + +KKG L+VN ARG
Sbjct: 200 PELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGA 259
Query: 289 LLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK 348
+++ +A+ +E GH+GG DV +P + P N +TPH G T + A
Sbjct: 260 IMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAA 319
Query: 349 VV 350
Sbjct: 320 GT 321
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 195 bits (498), Expect = 3e-59
Identities = 71/302 (23%), Positives = 116/302 (38%), Gaps = 35/302 (11%)
Query: 63 IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 114
+ V D PD + + + + + L I++A +KL + G+G + V
Sbjct: 68 HTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHV 127
Query: 115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLGVP 170
D+ +A + VA + N+ S AE + ++L L+R + V
Sbjct: 128 DLQSAIDRNVTVAEVTY---CNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS 184
Query: 171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 230
L V + G IG+ + +RL PF V + T R
Sbjct: 185 HAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLP------------------ 226
Query: 231 DDLVDEKGC--HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288
+ + E H + DVV L+ +T ++N L K+G+ +VN ARG
Sbjct: 227 ESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGK 286
Query: 289 LLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAK 348
L D +A+A LE G L G DV + +P + P +TPH+ G T + A
Sbjct: 287 LCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAA 346
Query: 349 VV 350
Sbjct: 347 GT 348
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 193 bits (493), Expect = 5e-59
Identities = 79/328 (24%), Positives = 135/328 (41%), Gaps = 44/328 (13%)
Query: 57 LQNYPSIQVDVVPISDVPDV---IANYH-LCVV--KTMRLDSNCISRANQMKLIMQFGV- 109
L ++V + V + +A+ L ++ +T R+ + R ++K+I Q G
Sbjct: 23 LLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERT-RVTRQLLDRLPKLKIISQTGRV 81
Query: 110 ---GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMR--- 159
+D+ A T G+ V G + + AELT L++ R+ ++
Sbjct: 82 SRDAGGHIDLEACTDKGVVVLEGKG----SPVAPAELTWALVMAAQRRIPQYVASLKHGA 137
Query: 160 -----MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 214
+ G L G+T+ I G+G IG +A R FG+ ++ W
Sbjct: 138 WQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLV----WGRE- 192
Query: 215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 274
S A +G + + K + +FE ++DV+ L LN +T I+ + L+
Sbjct: 193 ----NSKERARADGF--AVAESK---DALFE---QSDVLSVHLRLNDETRSIITVADLTR 240
Query: 275 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 334
MK +L VN +R L++ + L G G IDV TEP +L+ +N + TPH
Sbjct: 241 MKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH 300
Query: 335 VGGVTEHSYRSMAKVVGDVALQLHAGTP 362
+G V SY + L + G
Sbjct: 301 IGYVERESYEMYFGIAFQNILDILQGNV 328
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 184 bits (470), Expect = 2e-55
Identities = 77/307 (25%), Positives = 123/307 (40%), Gaps = 37/307 (12%)
Query: 63 IQVDVVPISDVPD-----VIANYHLCVVKTM---RLDSNCISRANQMKLIMQFGVGLEGV 114
++ + + I + + + + I +A ++KL++ GVG + +
Sbjct: 39 HELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHI 98
Query: 115 DINAATRCG--IKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQ----KKLG 168
D++ + G I V + G N S AE + ML L+R I
Sbjct: 99 DLDYINQTGKKISVLEVTG---SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAI 155
Query: 169 VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG 228
+ GKT+ +G G IG + +RL PF K + + K G
Sbjct: 156 AKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELL-------YYDYQALPKDAEEKVG 208
Query: 229 IIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGG 288
+ E+I E ++AD+V L+ T G++NK LS KKG+ LVN ARG
Sbjct: 209 A------RR--VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGA 260
Query: 289 LLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVL-----ITPHVGGVTEHSY 343
+ E +A LE G L G G DV + +P + P +N +TPH G T +
Sbjct: 261 ICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQ 320
Query: 344 RSMAKVV 350
A+
Sbjct: 321 TRYAQGT 327
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 183 bits (468), Expect = 3e-55
Identities = 70/323 (21%), Positives = 133/323 (41%), Gaps = 36/323 (11%)
Query: 64 QVDVVPISDVPD----VIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINA 118
V + V+ + T+ L + + +++I++ G G + +DI +
Sbjct: 44 TVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKS 103
Query: 119 ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---------KQNEMRMAIEQKKLGV 169
A GI V +P + A+ T+ +L L R ++ ++EQ +
Sbjct: 104 AGDLGIAVCNVPA---ASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVA 160
Query: 170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI 229
+ G+T+ I+G G +G +A R + FG ++ S + G+
Sbjct: 161 SGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPY---------LSDGVERALGL 211
Query: 230 IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGL 289
V + + +D V LN+ ++N + M++G+ LVN ARGGL
Sbjct: 212 --QRV------STLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL 263
Query: 290 LDYEAIAHYLECGHLGGLGIDVAWTEPFDPND-PILKFKNVLITPHVGGVTEHSYRSMA- 347
+D +A+A L+ G + G +DV +EPF + P+ N++ TPH +E + M
Sbjct: 264 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMRE 323
Query: 348 KVVGDVALQLHAGTPLTGLEFVN 370
+ ++ + P + VN
Sbjct: 324 EAAREIRRAITGRIPDSLKNCVN 346
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 181 bits (463), Expect = 6e-55
Identities = 85/322 (26%), Positives = 149/322 (46%), Gaps = 38/322 (11%)
Query: 38 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISD---VPDVIANYHLCVVKTM-RLDSN 93
+VL P + L++ ++V D + +++ + +V++ ++
Sbjct: 5 KVLVAAPLHEK----AIQVLKD-AGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRR 59
Query: 94 CISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR 153
I A ++K+I + GVGL+ +D+ AA GI+V P ++ S AEL + LM + R
Sbjct: 60 VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPA---ASSRSVAELAVGLMFSVAR 116
Query: 154 KQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 208
K + +K+ G L GKT+ I+GFG IG ++AK G+ I+
Sbjct: 117 KIAFADRKMREGVWAKKEA---MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDP 173
Query: 209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVN 268
+ A + VD E + + ++DVV + L + T ++N
Sbjct: 174 Y---------PNEERAKEVNG--KFVD----LETLLK---ESDVVTIHVPLVESTYHLIN 215
Query: 269 KSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKN 328
+ L MKK ++L+N +RG ++D A+ L+ G + G G+DV EP + P+ KF N
Sbjct: 216 EERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDN 275
Query: 329 VLITPHVGGVTEHSYRSMAKVV 350
V++TPH+G T + V
Sbjct: 276 VVLTPHIGASTVEAQERAGVEV 297
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 181 bits (461), Expect = 6e-55
Identities = 60/302 (19%), Positives = 111/302 (36%), Gaps = 36/302 (11%)
Query: 60 YPSIQVDVVPISDVPDVIANYHLCVVKTM-----RLDSNCISRANQMKLIMQFGVGLEGV 114
Y + D V+ + L ++ + + K+I G++ +
Sbjct: 4 YVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGVDHI 63
Query: 115 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGET 174
D+N + + + S AE L+L + E ++
Sbjct: 64 DVNGIPENVVLCSNAGA----YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSPTTL 119
Query: 175 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLV 234
L GK + ILG+G IG +A + FG+++IA RS + V + DL
Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQ--------NVDVISESPADLF 171
Query: 235 DEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEA 294
++D V+ + L +T G+VN L++ +K +VN+AR ++
Sbjct: 172 -------------RQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPD 218
Query: 295 IAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVA 354
+ +L+ DV W EP +N +++PHV G +A +A
Sbjct: 219 MIGFLKERSDVWYLSDVWWNEPEITETN---LRNAILSPHVAGGMSGEIMDIA---IQLA 272
Query: 355 LQ 356
+
Sbjct: 273 FE 274
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 180 bits (459), Expect = 4e-54
Identities = 72/288 (25%), Positives = 133/288 (46%), Gaps = 32/288 (11%)
Query: 75 DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 133
+ L + + R+D A +++++ + VG + +DI AT+ GI V P +
Sbjct: 41 KKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVL 100
Query: 134 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT---------GETLLGKTVFILG 184
T + A+L L+L R + + + G + GKT+ I+G
Sbjct: 101 T---DATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIG 157
Query: 185 FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIF 244
G IG +AKR + F ++I+ R+ + + + + +
Sbjct: 158 LGRIGQAIAKRAKGFNMRILYYSRT---------RKEEVERELNAE---------FKPLE 199
Query: 245 EFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHL 304
+ ++D VV + L ++T ++N+ L MKK ++L+NIARG ++D A+ L+ G +
Sbjct: 200 DLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWI 259
Query: 305 GGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
G G+DV EP N+ + K NV++TPH+G + + MA++V
Sbjct: 260 AGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAELVAK 306
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 178 bits (455), Expect = 1e-53
Identities = 85/284 (29%), Positives = 134/284 (47%), Gaps = 33/284 (11%)
Query: 75 DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 133
+ L R+D+ + RA +K+I + VG++ VD+ AA GI+V PG +
Sbjct: 39 KRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVL 98
Query: 134 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGNI 188
T + A+LT+ L+L + R+ E P G L G T+ ++G G I
Sbjct: 99 T---EATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRI 155
Query: 189 GVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS 248
G +AKR FG++++ R+ L +++L+ E
Sbjct: 156 GQAVAKRALAFGMRVVYHART----------PKPLPYPFLSLEELLKE------------ 193
Query: 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLG 308
ADVV L +T ++N+ L +MK+G++L+N ARG L+D EA+ L GHL G G
Sbjct: 194 -ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAG 251
Query: 309 IDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
+DV EP P P+ N +ITPH+G + MA+V +
Sbjct: 252 LDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 178 bits (453), Expect = 3e-53
Identities = 67/337 (19%), Positives = 128/337 (37%), Gaps = 45/337 (13%)
Query: 49 SHNYTKEYLQNY-PSIQVDVVPISDVPD---VIANYH-LCVVKTMRLDSNCISRANQMKL 103
+ Q + + + + + V +L +S+ ++KL
Sbjct: 8 VPQEDVPFYQEALKDLSLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSKMPRLKL 67
Query: 104 IMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE 163
I VG + +D++ + GI V IP + S AE T ++L L+++ + ++
Sbjct: 68 IHTRSVGFDHIDLDYCKKKGILVTHIPA---YSPESVAEHTFAMILTLVKRLKRIEDRVK 124
Query: 164 QKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS 220
+ L T+ ++G G IG +A FG+K++ +
Sbjct: 125 KLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVV---------KR 175
Query: 221 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSL 280
L K + L +++ + ++DV+ + K+T ++N+ +S MK G
Sbjct: 176 EDLKEKGCVYTSL-------DELLK---ESDVISLHVPYTKETHHMINEERISLMKDGVY 225
Query: 281 LVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP---------------FDPNDPILK 325
L+N ARG ++D +A+ + G GLG+DV E +
Sbjct: 226 LINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELAC 285
Query: 326 FKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTP 362
NV+ITPH+ T+ S + + V G
Sbjct: 286 KDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDL 322
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 176 bits (450), Expect = 5e-53
Identities = 82/335 (24%), Positives = 147/335 (43%), Gaps = 45/335 (13%)
Query: 34 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVV--KTM 88
+ L P + L+ IQVD + ++ ++I NY + VV +T
Sbjct: 3 IYTVKALITDP----IDEILIKTLRE-KGIQVDYMPEISKEELLNIIGNYDIIVVRSRT- 56
Query: 89 RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 148
++ + I + ++K+I + G+GL+ +D A + IKV PG + S ELTI LM
Sbjct: 57 KVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPG---ASTDSAVELTIGLM 113
Query: 149 LGLLRK----QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
+ RK + I +K G+ E L GKT+ I+GFG IG ++ G+K++
Sbjct: 114 IAAARKMYTSMALAKSGIFKKIEGL---E-LAGKTIGIVGFGRIGTKVGIIANAMGMKVL 169
Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
A A K V E++ +DV+ ++++K
Sbjct: 170 AYDIL---------DIREKAEKINA--KAVS----LEELL---KNSDVISLHVTVSKDAK 211
Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP--FDPNDP 322
I++ MK ++VN +R ++ +A+ Y++ G + DV W EP +
Sbjct: 212 PIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELE 271
Query: 323 ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL 357
+LK + V++T H+G T+ + + +A+ L
Sbjct: 272 LLKHERVIVTTHIGAQTKEAQKRVAE---MTTQNL 303
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 176 bits (450), Expect = 6e-53
Identities = 79/285 (27%), Positives = 121/285 (42%), Gaps = 27/285 (9%)
Query: 75 DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGD 132
+ + L + + I R +K I + +G + +D++A GIKV P
Sbjct: 40 ETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHG 99
Query: 133 VTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPT---GETLLGKTVFILGFGN 187
VT + AE+ + L+LG R+ E I + P GE L KT+ I GFG+
Sbjct: 100 VT---VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGS 156
Query: 188 IGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFA 247
IG LAKR + F + I AS S ++S A + +D L+
Sbjct: 157 IGQALAKRAQGFDMDIDYFDTHRASSSD---EASYQATFHDSLDSLL------------- 200
Query: 248 SKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGL 307
S + +T NK+ + S+ +G+++VN ARG L+D E + LE G L
Sbjct: 201 SVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA 260
Query: 308 GIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
G DV EP + N+ N + PH+G + MA D
Sbjct: 261 GFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQAND 304
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 177 bits (450), Expect = 1e-52
Identities = 65/308 (21%), Positives = 129/308 (41%), Gaps = 36/308 (11%)
Query: 70 ISDVPDVIANYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVAR 128
D +I ++ +++ IS + +K+ G G + +D++A G+ A
Sbjct: 49 YGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFAN 108
Query: 129 IPGDVTGNAASCAELTIYLMLGLLRKQNE-MRMAIEQK--------KLGVPTGETLLGKT 179
G + ++L +YL+L + R + R A + G
Sbjct: 109 SRGAGD---TATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHV 165
Query: 180 VFILGFGNIGVELAKR-LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 238
+ +G G I E+A++ + G+K++ + A + G
Sbjct: 166 LGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPAD------------------AETEKALG 207
Query: 239 C--HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 296
+ + E A ++D V + K T +++++F ++MK GS +VN ARG ++ +A+
Sbjct: 208 AERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALI 267
Query: 297 HYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD-VAL 355
L+ G L G+DV EP + +++ K+V +T H+GGV ++ ++ +
Sbjct: 268 AALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDR 326
Query: 356 QLHAGTPL 363
L G PL
Sbjct: 327 FLLQGKPL 334
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 176 bits (448), Expect = 2e-52
Identities = 78/312 (25%), Positives = 136/312 (43%), Gaps = 35/312 (11%)
Query: 55 EYLQNYPSIQVDVVPISDVP-------DVIANYH-LCVVKTMRLDSNCISRAN-QMKLIM 105
L +V+ SD P +A H L + + +D + A +K+I
Sbjct: 23 VALARAADCEVEQWD-SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVIS 81
Query: 106 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 165
VG++ + ++ + GI+V P +T + AEL + L+L R+ E ++
Sbjct: 82 TMSVGIDHLALDEIKKRGIRVGYTPDVLT---DTTAELAVSLLLTTCRRLPEAIEEVKNG 138
Query: 166 KLG--VPT---GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQS 220
P G L TV I+G G IG +A+RL+PFGV+ + ++
Sbjct: 139 GWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFL----YTGRQPRPEEA 194
Query: 221 SALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSL 280
+ + E A+++D +V SL T G+ NK F MK+ ++
Sbjct: 195 AEFQAE-------------FVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAV 241
Query: 281 LVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTE 340
+NI+RG +++ + + L G + G+DV EP N P+L KN +I PH+G T
Sbjct: 242 FINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATH 301
Query: 341 HSYRSMAKVVGD 352
+ +M+ + +
Sbjct: 302 RTRNTMSLLAAN 313
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 176 bits (448), Expect = 2e-52
Identities = 89/342 (26%), Positives = 160/342 (46%), Gaps = 39/342 (11%)
Query: 34 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVKTM-R 89
N+ +VL ++ LQ+ +QV ++ + + +V++ +
Sbjct: 24 ANLRKVLISDS----LDPCCRKILQD-GGLQVVEKQNLSKEELIAELQDCEGLIVRSATK 78
Query: 90 LDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 149
+ ++ I+ A +++++ + G G++ VD+ AATR GI V P GN+ S AELT +++
Sbjct: 79 VTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAAELTCGMIM 135
Query: 150 GLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
L R+ + ++ E+KK G L GKT+ ILG G IG E+A R++ FG+K I
Sbjct: 136 CLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRMQSFGMKTI 192
Query: 205 ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTA 264
S ++ G+ + E+I+ D + L T
Sbjct: 193 GYDPI---------ISPEVSASFGV--QQLP----LEEIW---PLCDFITVHTPLLPSTT 234
Query: 265 GIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPIL 324
G++N + + KKG +VN ARGG++D A+ L+ G G +DV EP + ++
Sbjct: 235 GLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALV 293
Query: 325 KFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366
+NV+ PH+G T+ + + + + + G LTG+
Sbjct: 294 DHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGV 335
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 175 bits (445), Expect = 6e-52
Identities = 74/281 (26%), Positives = 119/281 (42%), Gaps = 29/281 (10%)
Query: 87 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 146
L + + + + +I GVG + VD+ A R I V PG + A+L I
Sbjct: 80 GAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLA---DDVADLGIA 136
Query: 147 LMLGLLRKQNE----MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK 202
LML +LR+ + +R +P G + GK + +LG G IG LA R FG+
Sbjct: 137 LMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMS 196
Query: 203 IIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ 262
+ RS S + H+ + A +DV+ C++ +
Sbjct: 197 VRYWNRSTLSGV---------------------DWIAHQSPVDLARDSDVLAVCVAASAA 235
Query: 263 TAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDP 322
T IV+ S L ++ ++VN+ARG ++D +A+ L+ G + G G+DV EP
Sbjct: 236 TQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEP-AIRSE 294
Query: 323 ILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363
N ++ PH G T + +M K+V AG
Sbjct: 295 FHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKA 335
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 174 bits (444), Expect = 8e-52
Identities = 78/300 (26%), Positives = 136/300 (45%), Gaps = 32/300 (10%)
Query: 75 DVIANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV 133
VI + + V T ++ + A ++K+I G + +D+ AT+ GI V ++ G
Sbjct: 38 GVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG-- 95
Query: 134 TGNAASCAELTIYLMLGLLRKQNEMRMAIEQKK--------LGVPTGETLLGKTVFILGF 185
+ + AE T+ L++ L+RK + I + + G E+L GK V ILG
Sbjct: 96 -LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGM 154
Query: 186 GNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE 245
G IG +A+RL PFGVK+ R + + + +D +++ E
Sbjct: 155 GAIGKAIARRLIPFGVKLYYWSRH---------RKVNVEKELKA--RYMD----IDELLE 199
Query: 246 FASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLG 305
K+D+V+ L L + T I+N+ + ++ G LVNI RG L+D +A+ ++ G L
Sbjct: 200 ---KSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLK 255
Query: 306 GLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMA-KVVGDVALQLHAGTPLT 364
G DV EP ++ ++TPH G+ + + + V ++ L P
Sbjct: 256 GYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPED 315
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 174 bits (444), Expect = 1e-51
Identities = 67/277 (24%), Positives = 120/277 (43%), Gaps = 28/277 (10%)
Query: 82 LCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASC 140
L V T + + I + +K I VG + +D+ AA GIKV P ++ +C
Sbjct: 75 LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLS---DAC 131
Query: 141 AELTIYLMLGLLRKQNEMRMAIEQK--KLGVPT---GETLLGKTVFILGFGNIGVELAKR 195
AE+ + L+L R+ E + PT G L G+ + I G G IG +A R
Sbjct: 132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATR 191
Query: 196 LRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVC 255
R FG+ I R+ ++S A+ H+ + +D+ +
Sbjct: 192 ARGFGLAIHYHNRT-----RLSHALEEGAIY-------------HDTLDSLLGASDIFLI 233
Query: 256 CLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTE 315
+ G ++ ++ + +G++++NI+RG L++ +A+ L HL G+DV E
Sbjct: 234 AAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE 293
Query: 316 PFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
P + N+ +TPH+G T + +M ++
Sbjct: 294 P-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQ 329
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 173 bits (440), Expect = 3e-51
Identities = 67/288 (23%), Positives = 110/288 (38%), Gaps = 32/288 (11%)
Query: 77 IANYH-LCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTG 135
+ + R+D++ + ++++I G + D++A T G+ + +P
Sbjct: 43 CRDAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPD---L 99
Query: 136 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PT--GETLLGKTVFILGFGNIGVE 191
AEL I L +GL R + K P G L TV LG G IG+
Sbjct: 100 LTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLA 159
Query: 192 LAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKAD 251
+A RL+ +G + + L ++ +L +D
Sbjct: 160 MADRLQGWGATLQYHEAKALDTQT----EQRLGLRQVACSELFAS-------------SD 202
Query: 252 VVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDV 311
++ L LN T +VN L+ ++ G+LLVN RG ++D A+ LE G LGG DV
Sbjct: 203 FILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADV 262
Query: 312 -------AWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGD 352
P + +L N L TPH+G + +
Sbjct: 263 FEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQ 310
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 172 bits (439), Expect = 4e-51
Identities = 73/280 (26%), Positives = 120/280 (42%), Gaps = 28/280 (10%)
Query: 87 TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIY 146
D+ I +++++ F VGL+ VD+ G++V P +T A+L I
Sbjct: 74 NAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLT---DDVADLAIG 130
Query: 147 LMLGLLRKQNEMRMAIEQ---KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKI 203
L+L +LR+ E + + K GK V I+G G IG+ +A+R F I
Sbjct: 131 LILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190
Query: 204 IATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQT 263
RS + + E AS +D++V L +T
Sbjct: 191 SYFSRS--KKPNT-------------------NYTYYGSVVELASNSDILVVACPLTPET 229
Query: 264 AGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPI 323
I+N+ + ++ +L+NI RG +D + L G LGG G+DV EP + + +
Sbjct: 230 THIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP-EVPEKL 288
Query: 324 LKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363
+NV++ PHVG T + + MA +V +G PL
Sbjct: 289 FGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL 328
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 176 bits (448), Expect = 1e-50
Identities = 84/306 (27%), Positives = 148/306 (48%), Gaps = 37/306 (12%)
Query: 61 PSIQVDVVP---ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGVGLEGVDI 116
++V V + + +V++ +D+ ++ A ++K++ + GVGL+ VD+
Sbjct: 23 DQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDV 82
Query: 117 NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPT 171
+AAT G+ V P N S AE + L+L R+ ++ ++ +
Sbjct: 83 DAATARGVLVVNAPT---SNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSF---S 136
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID 231
G + GKTV ++G G IG +A+R+ FG ++A S A A + GI
Sbjct: 137 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPY---------VSPARAAQLGI-- 185
Query: 232 DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD 291
+L+ +D+ ++AD + L +TAG+++K L+ K G ++VN ARGGL+D
Sbjct: 186 ELLS----LDDLL---ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD 238
Query: 292 YEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVG 351
A+A + GH+ G+DV TEP + P+ + V++TPH+G T +
Sbjct: 239 EAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGASTAEAQDRAGT--- 294
Query: 352 DVALQL 357
DVA +
Sbjct: 295 DVAESV 300
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 172 bits (438), Expect = 3e-50
Identities = 83/305 (27%), Positives = 130/305 (42%), Gaps = 50/305 (16%)
Query: 55 EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 108
E L+ ++ + + I + H + +T L + I+ A ++ I F
Sbjct: 19 ESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTH-LTEDVINAAEKLVAIGAFA 77
Query: 109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 163
+G VD++AA + GI V P N S AEL I +L LLR + +
Sbjct: 78 IGTNQVDLDAAAKRGIPVFNAPF---SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGN 134
Query: 164 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA----TKRSWASHSQVSCQ 219
+ G GK + I+G+G+IG +L G+ + K
Sbjct: 135 KLAAG---SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP---------- 181
Query: 220 SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS 279
A + + DL+ + +DVV + N T ++ +S MK GS
Sbjct: 182 -LGNATQVQHLSDLL-------------NMSDVVSLHVPENPSTKNMMGAKEISLMKPGS 227
Query: 280 LLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHV 335
LL+N +RG ++D A+A L HL G IDV TEP +D P+ +F NVL+TPH+
Sbjct: 228 LLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHI 287
Query: 336 GGVTE 340
GG T+
Sbjct: 288 GGSTQ 292
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 169 bits (430), Expect = 7e-50
Identities = 62/333 (18%), Positives = 128/333 (38%), Gaps = 43/333 (12%)
Query: 52 YTKEYLQNYPSIQVDVVPISDVPDVIANYH----LCVVKTMRLDSNCISRANQM--KLIM 105
+ KE+ + ++V+ P+ +A + V + + + + +
Sbjct: 16 FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 75
Query: 106 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 165
VG++ +D+ A G ++ +P + + AE +LR+ M + +
Sbjct: 76 LRNVGVDNIDMAKAKELGFQITNVPV---YSPNAIAEHAAIQAARILRQDKAMDEKVARH 132
Query: 166 KLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 223
L G + + V ++G G+IG + + FG K+I
Sbjct: 133 DLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDI--------------- 177
Query: 224 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 283
+N ++ +D+++ +ADV+ + ++N ++ MK+ ++VN
Sbjct: 178 -FRNPELEKKGYYVDSLDDLYK---QADVISLHVPDVPANVHMINDESIAKMKQDVVIVN 233
Query: 284 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPF-------------DPNDPILKFKNVL 330
++RG L+D +A+ L+ G + G +DV E ++ NVL
Sbjct: 234 VSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVL 293
Query: 331 ITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPL 363
+TP T H+ R+M D L+L G
Sbjct: 294 VTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEA 326
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 168 bits (427), Expect = 1e-49
Identities = 60/309 (19%), Positives = 122/309 (39%), Gaps = 24/309 (7%)
Query: 58 QNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDIN 117
+ P +++ + + ++ +++AN++ G++ + ++
Sbjct: 25 AHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLAKANKLSWFQSTYAGVDVL-LD 83
Query: 118 AATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 177
A R ++ + G +E +L L+R+ R +Q+ + L G
Sbjct: 84 ARCRRDYQLTNVRG---IFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKG 140
Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 237
+T+ ILG G+IG +A + FG+K++ RS +
Sbjct: 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQL--------------- 185
Query: 238 GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH 297
+ + ++ADV+V L ++T + S K G++L N+ RG ++ +
Sbjct: 186 ---PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLT 242
Query: 298 YLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQL 357
L G LG +DV EP + P+ N++ITPH + +A++ ++
Sbjct: 243 ALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVRNYIRF 300
Query: 358 HAGTPLTGL 366
G PL G
Sbjct: 301 IDGQPLDGK 309
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 166 bits (422), Expect = 7e-49
Identities = 69/332 (20%), Positives = 125/332 (37%), Gaps = 31/332 (9%)
Query: 38 RVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISR 97
++F P F A+ + + P +V + D +V ++ +
Sbjct: 5 EIIFYHPTFNAAW-WVNALEKALPHARVREWKVGDNNPA----DYALVWQPPVE---MLA 56
Query: 98 ANQMKLIMQFGVGLEGVDINAATRCGIKVARIPG---DVTGNAASCAELTIYLMLGLLRK 154
++K + G G++ + + A IP + TG E + +L R+
Sbjct: 57 GRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRR 116
Query: 155 QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHS 214
++ + Q T +V I+G G +G ++A+ L+ +G + RS S
Sbjct: 117 FDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP 176
Query: 215 QVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSS 274
V E++ F ++ V++ L QT GI+N L
Sbjct: 177 GVESYVGR------------------EELRAFLNQTRVLINLLPNTAQTVGIINSELLDQ 218
Query: 275 MKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPH 334
+ G+ ++N+ARG + + L+ G L G +DV EP P+ + V +TPH
Sbjct: 219 LPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPH 278
Query: 335 VGGVTEHSYRSMAKVVGDVALQLHAGTPLTGL 366
+ VT + QL G P+TG
Sbjct: 279 IAAVT--RPAEAIDYISRTITQLEKGEPVTGQ 308
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 166 bits (422), Expect = 1e-48
Identities = 73/349 (20%), Positives = 125/349 (35%), Gaps = 62/349 (17%)
Query: 49 SHNYTKEYLQNY-PSIQVDVVPISDVP------DVIANYH-LCVVKTMRLDSNCISRANQ 100
+ + D+ + D ++ A + + + + + +
Sbjct: 8 VRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKK 67
Query: 101 M--KLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEM 158
+ K I+ G + +D A G +A +P + + AEL + + LLR
Sbjct: 68 LGVKYILTRTAGTDHIDKEYAKELGFPMAFVPR---YSPNAIAELAVTQAMMLLRHTAYT 124
Query: 159 RMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ 215
+K + + TV ++G G IG A+ G +I
Sbjct: 125 TSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGE--------- 175
Query: 216 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFAS------KADVVVCCLSLNKQTAGIVNK 269
D+ + KG ED S K+D++ K+ +V +
Sbjct: 176 ----------------DVFEIKGI-EDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTR 218
Query: 270 SFLSSMKKGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP---------FDPN 320
FL MK G++LVN ARG L+D EA+ +E G LGG G DV E
Sbjct: 219 DFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLE 278
Query: 321 DPILK-----FKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 364
+P+ + + VLITPH+G T+ + ++M +V L
Sbjct: 279 NPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCP 327
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 168 bits (427), Expect = 2e-48
Identities = 81/301 (26%), Positives = 135/301 (44%), Gaps = 42/301 (13%)
Query: 55 EYLQNYPSIQVDVVPISDVPD----VIANYHLCVV--KTMRLDSNCISRANQMKLIMQFG 108
EY ++ V +P + I++ H+ + +T +L + AN++ + F
Sbjct: 30 EYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRT-QLTEEIFAAANRLIAVGCFS 88
Query: 109 VGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR----KQNEMRMAI-E 163
VG V++ AA + GI V P N S AEL I ++ L+R + E
Sbjct: 89 VGTNQVELKAARKRGIPVFNAPF---SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWE 145
Query: 164 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 223
+ +G + GKT+ I+G+GNIG ++ G+ + +
Sbjct: 146 KTAIG---SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRY-------YDTSDKLQYGN 195
Query: 224 AVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVN 283
+D+L+ +DVV + +K T+ ++ ++ L MKKG+ L+N
Sbjct: 196 VKPAASLDELL-------------KTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242
Query: 284 IARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPND----PILKFKNVLITPHVGGVT 339
ARG +D EA+A L+ GHL G IDV EP + P+ +NV++TPH+GG T
Sbjct: 243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGST 302
Query: 340 E 340
E
Sbjct: 303 E 303
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 165 bits (420), Expect = 2e-48
Identities = 66/341 (19%), Positives = 135/341 (39%), Gaps = 48/341 (14%)
Query: 49 SHNYTKEYLQNY---PSIQVDVVPISDVPD---VIANYH-LCVVKTMRLDSNCISR--AN 99
+ +Y + + ++ + + + ++T + + A
Sbjct: 8 ARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAY 67
Query: 100 QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMR 159
+K + VG + +D+ A + GI+++ +P + A+ AE + L LLR +++
Sbjct: 68 GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPA---YSPAAIAEFALTDTLYLLRNMGKVQ 124
Query: 160 MAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 216
++ G G+ L +TV ++G G+IG K + FG K+IA +
Sbjct: 125 AQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA-------YDPY 177
Query: 217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 276
+ ++DL ++DV+ + +Q I+N++ + MK
Sbjct: 178 PMKGDHPDFDYVSLEDLF-------------KQSDVIDLHVPGIEQNTHIINEAAFNLMK 224
Query: 277 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEP-------------FDPNDPI 323
G++++N AR L+D +A+ L+ G L G+GID E D +
Sbjct: 225 PGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDEL 284
Query: 324 LKFKNVLITPHVGGVTEHSYRSMAKVVGDVALQLHAGTPLT 364
L NV+++PH+ TE + +M + +
Sbjct: 285 LGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETS 325
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 153 bits (388), Expect = 3e-43
Identities = 59/315 (18%), Positives = 123/315 (39%), Gaps = 56/315 (17%)
Query: 52 YTKEYLQNYPSIQVDVVP-ISDVPDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 109
+ + +P + +A + +V+++ + ++ + ++ + +
Sbjct: 11 VVDAFFA--DQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALA-GSPVRFVGTCTI 67
Query: 110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 169
G + +D++ GI + PG NA + + +L + +
Sbjct: 68 GTDHLDLDYFAEAGIAWSSAPG---CNARGVVDYVLGCLLAMAEVR-------------- 110
Query: 170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI 229
G L +T ++G G +G L + LR G K++ C A +
Sbjct: 111 --GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLV------------CDPPRQAREPDG 156
Query: 230 IDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQ----TAGIVNKSFLSSMKKGSLLVNIA 285
+ V E + +ADV+ LN+ T ++++ L++++ G+ LVN +
Sbjct: 157 --EFVS----LERLLA---EADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNAS 207
Query: 286 RGGLLDYEAIAHYLECGHLGGLGIDVAW-TEPFDPNDPILKFKNVLITPHVGGVTEHSYR 344
RG ++D +A+ LE G + +DV W EP DP L + ++ TPH+ G +S
Sbjct: 208 RGAVVDNQALRRLLEGGADLEVALDV-WEGEP--QADPELAARCLIATPHIAG---YSLE 261
Query: 345 SMAKVVGDVALQLHA 359
+ + A
Sbjct: 262 GKLRGTAQIYQAYCA 276
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 150 bits (380), Expect = 5e-42
Identities = 64/319 (20%), Positives = 124/319 (38%), Gaps = 69/319 (21%)
Query: 52 YTKEYLQNYPSIQVDVVPISDV-PDVIANYHLCVVKTM-RLDSNCISRANQMKLIMQFGV 109
Y +E +V VP + + + + +V+++ +++ + +S + +
Sbjct: 14 YARELFSRLG--EVKAVPGRPIPVEELNHADALMVRSVTKVNESLLS-GTPINFVGTATA 70
Query: 110 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 169
G + VD + GI + PG NA + E +L L +
Sbjct: 71 GTDHVDEAWLKQAGIGFSAAPG---CNAIAVVEYVFSALLMLAERD-------------- 113
Query: 170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSC----QSSALAV 225
G +L +T+ I+G GN+G L RL G++ + C +
Sbjct: 114 --GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL------------CDPPRAARGDEG 159
Query: 226 KNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNK----QTAGIVNKSFLSSMKKGSLL 281
+D+LV +ADV+ L K +T + +++ + +K G++L
Sbjct: 160 DFRTLDELV-------------QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAIL 206
Query: 282 VNIARGGLLDYEAIAHYLECGHLGGLGIDVAW-TEPFDPNDPILKFKNVLITPHVGG--- 337
+N RG ++D A+ L G + +DV W EP D N +L+ ++ T H+ G
Sbjct: 207 INACRGPVVDNAALLARLNAGQPLSVVLDV-WEGEP-DLNVALLEAVDIG-TSHIAGYTL 263
Query: 338 -----VTEHSYRSMAKVVG 351
T + + + +G
Sbjct: 264 EGKARGTTQVFEAYSAFIG 282
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 85.8 bits (212), Expect = 3e-19
Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 25/150 (16%)
Query: 160 MAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ 219
MAI+ T T+ G V +LG G +G+ +A++ G K+ R ++
Sbjct: 144 MAIQH------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR---- 193
Query: 220 SSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGS 279
I ++ E + DV + + A +V + L+ M +
Sbjct: 194 ----------IAEMGMEPFHISKAAQELRDVDVCINTI-----PALVVTANVLAEMPSHT 238
Query: 280 LLVNIARGGLLDYEAIAHYLECGHLGGLGI 309
++++A A L G+
Sbjct: 239 FVIDLASKPGGTDFRYAEKRGIKALLVPGL 268
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 52.9 bits (127), Expect = 5e-08
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 37/150 (24%)
Query: 159 RMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQV 216
+AI+ T T+ G V +LG G G+ +A+ G VK+ A RS A ++
Sbjct: 145 MLAIQH------TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGA--RSSAHLAR- 195
Query: 217 SCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMK 276
I ++ +++ E D+ + N + I+N++ LSSM
Sbjct: 196 -------------ITEMGLVPFHTDELKEHVKDIDICI-----NTIPSMILNQTVLSSMT 237
Query: 277 KGSLLVNIA--RGGLLDYEA-----IAHYL 299
+L++++A GG D++ I L
Sbjct: 238 PKTLILDLASRPGG-TDFKYAEKQGIKALL 266
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 44.5 bits (105), Expect = 2e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
T+ G G L++ L P G +II T R+
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRN 37
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 44.5 bits (106), Expect = 3e-05
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
G + G V I GFGN+G A+ G +++A V + + + GI
Sbjct: 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA----------VQDHTGTVYNEAGIDP 279
Query: 231 DDLVDEKGCHEDIFEFA 247
DL+ + +
Sbjct: 280 YDLLRHVQEFGGVRGYP 296
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 44.0 bits (105), Expect = 5e-05
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
G L + I GFGN G LAK + G K+I +S + L +G+ I
Sbjct: 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG----------ISDANGGLYNPDGLDI 265
Query: 231 DDLVDEKGCHEDIFEFASKA 250
L+D++ + +
Sbjct: 266 PYLLDKRDSFGMVTNLFTDV 285
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 42.9 bits (102), Expect = 1e-04
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
G L G V + G G +G +A G++++A V+ + G+ +
Sbjct: 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA----------VATSMGGMYAPEGLDV 262
Query: 231 DDLVDEKGCHEDIFEFA 247
+++ +
Sbjct: 263 AEVLSAYEATGSLPRLD 279
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 41.6 bits (98), Expect = 2e-04
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
+ I G G++G+ELA+RL G ++ +RS
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRS 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 3e-04
Identities = 51/349 (14%), Positives = 90/349 (25%), Gaps = 96/349 (27%)
Query: 3 DICSEKRLTWFIIQFHQGDISKMEGMARSSDKNITRVLFCGP--HFPASHN-------YT 53
++ + K F + K+ + + K +T L H H+
Sbjct: 252 NVQNAKAWNAFNLS------CKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 54 KEYLQNYPSIQVDVVP-----------------ISDVPDVIANY-HLC---VVKTMRLDS 92
K L Y + +P I D N+ H+ + +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 93 NCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCA----------E 142
N + A K+ + V I I I DV E
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 143 LTIYLM---LGLLRKQNEM----RMAIEQKKLGV---PTGETLLGKTVFILGFGNIG--- 189
TI + L L K R ++ + + IG
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH--IGHHL 481
Query: 190 --VELAKRLRPF----------GVKIIATKRSWASHSQVSCQSSALAV-------KNGII 230
+E +R+ F KI +W + S L K I
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW------NASGSILNTLQQLKFYKPYIC 535
Query: 231 DDLVDEKGCHEDIFEFASKAD-VVVCC-------LSLNKQTAGIVNKSF 271
D+ + I +F K + ++C ++L + I ++
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 37.1 bits (85), Expect = 0.010
Identities = 48/341 (14%), Positives = 94/341 (27%), Gaps = 116/341 (34%)
Query: 53 TKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE 112
T+ Y++ Q D + + V A Y++ ++ + K ++ GV
Sbjct: 109 TRMYIE-----QRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-- 159
Query: 113 GVDINAATRCG-----IKVAR-------IPGDV----TGNAASCAELTIYLMLGLLRK-- 154
G G + V + + N + E + ++ LL +
Sbjct: 160 G--------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQID 210
Query: 155 --------------------QNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAK 194
Q E+R ++ K LL +L V+ AK
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY----ENCLL-----VLL----NVQNAK 257
Query: 195 RLRPFGV--KIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFE----FAS 248
F + KI+ T R QV+ SA + +D D E
Sbjct: 258 AWNAFNLSCKILLTTRF----KQVTDFLSAATTTHISLDHH--SMTLTPD--EVKSLLLK 309
Query: 249 KADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAH-----YLECGH 303
D L + + ++ + +A ++ C
Sbjct: 310 YLDCRPQDLP--------------REVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDK 354
Query: 304 LGGLGIDVAWTEPFDPNDPILK--------F-KNVLITPHV 335
L + I+ + +P + + F + I +
Sbjct: 355 LTTI-IESS-LNVLEPAE--YRKMFDRLSVFPPSAHIPTIL 391
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 41.2 bits (97), Expect = 4e-04
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
KT + GFGN+G+ + L FG K I V ++ +GI
Sbjct: 239 TPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT----------VGESDGSIWNPDGIDP 288
Query: 231 DDLVDEKGCHEDIFEFA 247
+L D K H I F
Sbjct: 289 KELEDFKLQHGTILGFP 305
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 40.9 bits (97), Expect = 4e-04
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 165 KKLGVPTGETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSAL 223
K LG +TL GKT+ I G+GN G LAK + FG+K++A VS +
Sbjct: 203 KVLGW---DTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA----------VSDSKGGI 249
Query: 224 AVKNGI-IDDLVDEKGCHEDIFEFA 247
+G+ D+++ K H + +F
Sbjct: 250 YNPDGLNADEVLKWKNEHGSVKDFP 274
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 40.9 bits (97), Expect = 5e-04
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 12/78 (15%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSALAVKNGI- 229
G TV + GFGN+G A + + G K++A VS + G
Sbjct: 204 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA----------VSDSRGGIYNPEGFD 253
Query: 230 IDDLVDEKGCHEDIFEFA 247
+++L+ K H + +
Sbjct: 254 VEELIRYKKEHGTVVTYP 271
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 40.9 bits (97), Expect = 5e-04
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
+ GKTV I G GN+G A L G K+IA VS + K G+ +
Sbjct: 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA----------VSDINGVAYRKEGLNV 254
Query: 231 DDLVDEK 237
+ + K
Sbjct: 255 ELIQKNK 261
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 40.6 bits (96), Expect = 5e-04
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGI-I 230
G + + + GFGN+G K + G K+ A + + + AL +NGI
Sbjct: 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA-----IAEWDRNEGNYALYNENGIDF 261
Query: 231 DDLVDEKGCHEDIFEFA 247
+L+ K ++ + F
Sbjct: 262 KELLAYKEANKTLIGFP 278
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 40.2 bits (95), Expect = 8e-04
Identities = 34/187 (18%), Positives = 54/187 (28%), Gaps = 61/187 (32%)
Query: 164 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSAL 223
++ G ++L G V + G GN+ L K+L G K++ T + A+ S + A
Sbjct: 163 KEAFG---SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD 219
Query: 224 AVKNGIIDDLVDEKGCHEDIFEFASKADVVV-CCL--SLNKQTAGIVNKSFLSSMKKGSL 280
AV I+ D+ C L LN T + K +
Sbjct: 220 AVAP-------------NAIYG--VTCDIFAPCALGAVLNDFTIPQL---------KAKV 255
Query: 281 LVNIARGGLLDYEAIAHYLECGHLGGLGIDVAWTEPFDPNDPILKFKNVLITPHV----G 336
+ A L D L ++ P G
Sbjct: 256 IAGSADNQLKDPRH--------------------------GKYLHELGIVYAPDYVINAG 289
Query: 337 GVTEHSY 343
GV +
Sbjct: 290 GVI-NVA 295
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 39.9 bits (94), Expect = 9e-04
Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC 239
+ ++G G IG LA LR G +I S Q +C+ AV+ ++D+ +
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGV-----SRQQSTCE---KAVERQLVDEAGQD--- 51
Query: 240 HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLL 281
A ++ C + + + + + + +++
Sbjct: 52 ----LSLLQTAKIIFLCTPI-QLILPTL-EKLIPHLSPTAIV 87
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 39.5 bits (93), Expect = 9e-04
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 235
KT++I G G IG LA ++ KI+ R S +S +A++ GI+D+
Sbjct: 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNR--------SDRSRDIALERGIVDE--- 55
Query: 236 EKGCHEDIFEFASKADVVVCC 256
D FA+ ADV++
Sbjct: 56 ---ATADFKVFAALADVIILA 73
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 39.5 bits (93), Expect = 0.001
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 165 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 206
G+ + L G TV + G G +G LA G +++
Sbjct: 166 AHRGLGS---LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVA 204
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 38.5 bits (90), Expect = 0.003
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 237
+ V ILG G IG L + L + + S+ + AV G +
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFG-----YNRSRSGAK---SAVDEGFDV--SAD- 57
Query: 238 GCHEDIFEFASKADVVVCC 256
+ A++ ++V
Sbjct: 58 -LEATLQRAAAEDALIVLA 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.004
Identities = 50/287 (17%), Positives = 80/287 (27%), Gaps = 114/287 (39%)
Query: 123 GIKVARIPGDVTGNAASCAELTIYL--MLGLLRKQNEMRMAIEQKKLGVPTGET------ 174
G + I V N LTI+ G ++N M E G E
Sbjct: 1658 GFSILDI---VINNPV---NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEIN 1711
Query: 175 -------------LLGKTVF----ILGFGNIGVELA--KRLRPFGVKIIATKRSWASHS- 214
LL T F + +E A + L+ G +I ++A HS
Sbjct: 1712 EHSTSYTFRSEKGLLSATQFTQPALTL-----MEKAAFEDLKSKG--LIPADATFAGHSL 1764
Query: 215 ---QVSCQSSALAVKNGIID-----DLV-------------DEKGC---------HEDIF 244
+ALA ++ ++V DE G +
Sbjct: 1765 GEY------AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 245 EFASKADVVVCCLSLNKQTAG---IVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLEC 301
S+ + + K+T IVN + N+ Y A
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVN--Y-----------NVE-NQQ--Y-VAA----- 1856
Query: 302 GHLGGLGIDVAWTEPFDPNDPILKFKNVLI-----TPHVGGVTEHSY 343
G L L D T + +K + + I + + V H +
Sbjct: 1857 GDLRAL--DTV-TNVLN----FIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 28.5 bits (63), Expect = 5.3
Identities = 67/446 (15%), Positives = 118/446 (26%), Gaps = 185/446 (41%)
Query: 23 SKMEGMARSSDKNITRVLFCGPHFPASHNYTKEYLQN-------YPSIQVDVVPISDVPD 75
S +E + + F YL+ +Q + + +
Sbjct: 70 SLVEPSKVGQFDQVLNLCLT--EF------ENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 76 VIANYHLCVVKTMRLDSNCIS-------RANQMKLIMQFGVGLEGVDINAATRCGIKVAR 128
+I NY + R + +L+ FG
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-------------------- 161
Query: 129 IPGDVTGNAASC-AEL-TIY-----LMLGLLRK-----QNEMRMAIEQKKL---GV---- 169
G GN EL +Y L+ L++ +R ++ +K+ G+
Sbjct: 162 --GQ--GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 170 --------PTGETLLGKTV-----FILGFGNIGV----------ELAKRLRPFGV----- 201
P + LL + ++ + V EL L+ G
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK--GATGHSQ 275
Query: 202 -----KIIATKRSWAS-HSQVS------------CQSSA--LAVKNGIIDDLVDE----- 236
IA SW S V C + ++ I++D ++
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 237 ------KGC-HEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSL-LVNIARGG 288
E + ++ +K N L + K+ + LVN A+
Sbjct: 336 SPMLSISNLTQEQVQDYVNK-----------------TNSH-LPAGKQVEISLVNGAK-- 375
Query: 289 LLDYEAIAHYLECGH---LGGL-----------GIDVAWTEPFDPNDPILKFKNV-LITP 333
+ + G L GL G+D + PF KF N L P
Sbjct: 376 --------NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-PFSERKL--KFSNRFL--P 422
Query: 334 HVGGVTE--HS-Y--RSMAKVVGDVA 354
V HS + + D+
Sbjct: 423 ----VASPFHSHLLVPASDLINKDLV 444
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 35.5 bits (83), Expect = 0.007
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 27/117 (23%)
Query: 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVK-NGIID 231
G + ++G G + E+A K+ R+ A A K
Sbjct: 17 RKNGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNID-------HVRAFAEKYEYEYV 69
Query: 232 DLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG---IVNKSFLSSMKKGSLLVNIA 285
+ DI DV++ T+ IV + S+ G L +++
Sbjct: 70 LI-------NDIDSLIKNNDVIITA------TSSKTPIVEE---RSLMPGKLFIDLG 110
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 36.8 bits (86), Expect = 0.009
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 205
+ L K + G GN+ L ++L G ++
Sbjct: 234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLT 267
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 36.8 bits (86), Expect = 0.011
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 205
+TL+GKTV + GFGN+ AK+L G K +
Sbjct: 225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 258
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 35.9 bits (82), Expect = 0.016
Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 31/148 (20%)
Query: 156 NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQ 215
N M+ +IE + ++G GN+ LAK L G +I+ S ++
Sbjct: 2 NAMKRSIEDTPIV-------------LIGAGNLATNLAKALYRKGFRIVQ----VYSRTE 44
Query: 216 VSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSM 275
S + A V+ DL E A + + L + + +
Sbjct: 45 ESARELAQKVEAEYTTDLA----------EVNPYAKLYIVS--LKDSAFAELLQGIVEGK 92
Query: 276 KKGSLLVNIARGGLLDYEAIAHYLECGH 303
++ +L+V+ A G + ++
Sbjct: 93 REEALMVHTA--GSIPMNVWEGHVPHYG 118
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 35.7 bits (83), Expect = 0.022
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 205
+ +T + G GN+ + ++L VK++
Sbjct: 247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT 280
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 34.6 bits (80), Expect = 0.051
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 172 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 205
G G V + G GN+ ++ FG ++I
Sbjct: 227 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVIT 260
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 34.1 bits (79), Expect = 0.062
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 178 KTVFILGFGNIGVELAKRL-RPFGVKII 204
+ + I+G GNIG LAKRL + + VK+I
Sbjct: 236 RRIMIVGGGNIGASLAKRLEQTYSVKLI 263
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 33.7 bits (78), Expect = 0.070
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 235
+ V I+G G +G AK LR G KI + +S + AV GIID+
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI--------NPESISKAVDLGIIDEGTT 53
Query: 236 EKGCHEDIFEFA-SKADVVVCC 256
I + D V+
Sbjct: 54 ------SIAKVEDFSPDFVMLS 69
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 34.1 bits (77), Expect = 0.077
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKN--GIIDDLVD 235
K+V +LG G + L G+K+ A + S + + V++ I D+ D
Sbjct: 4 KSVLMLGSGFVTRPTLDVLTDSGIKVTV-----ACRTLESAKKLSAGVQHSTPISLDVND 58
Query: 236 EKGCHEDIFEFASKADVVVCCL 257
+ + +K D+V+ +
Sbjct: 59 D----AALDAEVAKHDLVISLI 76
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 33.4 bits (77), Expect = 0.086
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 17/82 (20%)
Query: 178 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVD 235
+ V I+G G +G AK LR G KI + +S + AV GIID+
Sbjct: 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI--------NPESISKAVDLGIIDEGTT 85
Query: 236 EKGCHEDIFEFA-SKADVVVCC 256
I + D V+
Sbjct: 86 ------SIAKVEDFSPDFVMLS 101
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 32.7 bits (75), Expect = 0.16
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 158 MRMA-IEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
MR + + + G T + + K V + G+G +G A+ LR G I R
Sbjct: 2 MRESYANENQFGFKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRE 54
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 32.4 bits (74), Expect = 0.20
Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 22/134 (16%)
Query: 126 VARIPGDVTGNAA-----SCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTV 180
+ +IP + + E +I E+ ++ + TL + V
Sbjct: 135 LVKIPKSIEDIGILAQPLADIEKSIE----------EILEVQKRVPVWTCDDGTLNCRKV 184
Query: 181 FILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 240
++G G IGV R +G+++ ++ V + + +
Sbjct: 185 LVVGTGPIGVLFTLLFRTYGLEVWMA-------NRREPTEVEQTVIEETKTNYYNSSNGY 237
Query: 241 EDIFEFASKADVVV 254
+ + + K DV++
Sbjct: 238 DKLKDSVGKFDVII 251
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 32.3 bits (74), Expect = 0.22
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 166 KLGVPTGETLLGKTVFIL----GFGNIGVELAKRLRPFGVKIIATKRSWASHSQV 216
+L V + I+ G G+I V++A++ + +IAT + V
Sbjct: 161 RLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQR--TDLTVIATASRPETQEWV 213
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 32.1 bits (72), Expect = 0.31
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 167 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKII 204
LG + V ILG +GVE+AK + GVK +
Sbjct: 17 LGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSM 54
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 30.4 bits (69), Expect = 0.52
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 277 KGSLLVNIARGGLLDYEAIAHYLECGHLGGLGI----DVAWTEPFDPNDPILKFKNVLI 331
+ ++ ++RGGL+ +A L H+ + I E + ++
Sbjct: 28 QWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIV 86
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 30.7 bits (70), Expect = 0.58
Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 51/157 (32%)
Query: 175 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQ---SSALAVKNGII 230
+ K + +LG G +G E+ K + I+ ++ S S +K+ +I
Sbjct: 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIKDSGEEEIKS-VI 78
Query: 231 DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI----------------------VN 268
+ + + K D VC AG +
Sbjct: 79 EKINSKSI----------KVDTFVCA-------AGGWSGGNASSDEFLKSVKGMIDMNLY 121
Query: 269 KSFLSS------MKKGSLLVNIA-RGGLLDYEAIAHY 298
+F S+ + +G L V L + Y
Sbjct: 122 SAFASAHIGAKLLNQGGLFVLTGASAALNRTSGMIAY 158
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 30.8 bits (69), Expect = 0.58
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC 239
V ++G+G IG LA+ L G +I A H ++ + D+ E
Sbjct: 3 VGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREM---DVAVEAAS 59
Query: 240 HEDIFEFASKA 250
+ + ++A K
Sbjct: 60 QQAVKDYAEKI 70
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 30.4 bits (69), Expect = 0.66
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 20/93 (21%)
Query: 177 GKTVFILG-FGNIGVELAKRL--RPFGVKIIA-TKRSWASHSQVSCQSSALAVKNGIIDD 232
K V + G G G L R+ P K+IA +++ A H ++ + +
Sbjct: 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRL----------DNPVGP 54
Query: 233 LVDEKGCHEDIFEFASKADVVVCCLSLNKQTAG 265
L E + + D CCL + AG
Sbjct: 55 L------AELLPQLDGSIDTAFCCLGTTIKEAG 81
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 31.0 bits (69), Expect = 0.71
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 11/83 (13%)
Query: 177 GKTVFILGFGNIGVELAKRL-RPFGVKIIATKRSWASHSQVSCQSSALAVK-NGIIDDLV 234
GK V +LG G + + L + + A + + Q+ A I D+
Sbjct: 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTV-----ACRTLANAQALAKPSGSKAISLDVT 77
Query: 235 DEKGCHEDIFEFASKADVVVCCL 257
D+ + + + DVV+ +
Sbjct: 78 DD----SALDKVLADNDVVISLI 96
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 29.6 bits (67), Expect = 0.76
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIA 205
K ++G G G + K L G +++A
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEVLA 34
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 30.3 bits (68), Expect = 0.87
Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 11/105 (10%)
Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEK 237
T+ +GFG +A L +A + S A A + G+
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPL----- 79
Query: 238 GCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV 282
D + ADVV+ + A V S + ++ +
Sbjct: 80 ----DDVAGIACADVVLSLVVGAATKA--VAASAAPHLSDEAVFI 118
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 30.7 bits (70), Expect = 0.91
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 177 GKTVFILGFGNIGVELAKRLRPFGVKIIAT 206
GKT + G+G++G A LR FG +++ T
Sbjct: 211 GKTACVCGYGDVGKGCAAALRGFGARVVVT 240
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 30.4 bits (69), Expect = 0.95
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 177 GKTVFILGFGNIGVELAKRLRPFGVKIIAT 206
GK + G+G++G A+ L G ++ T
Sbjct: 247 GKVAVVCGYGDVGKGSAQSLAGAGARVKVT 276
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 28.9 bits (65), Expect = 0.96
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 309 IDVAWTEPFDPNDPILKFK 327
+ ++W P + I F
Sbjct: 34 VRLSWRPPAEAKGNIQTFT 52
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 30.7 bits (69), Expect = 1.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 171 TGETLLGKTVFILGFG--NIGVELAKRLRPFGVKIIAT 206
+G T GK + G G +IG E+ + L G K+I T
Sbjct: 646 SGLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVT 683
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis;
HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP:
a.151.1.1 c.2.1.7 d.58.39.1
Length = 404
Score = 30.3 bits (69), Expect = 1.1
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 16/86 (18%)
Query: 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASHSQVSCQSSALAVK-NGII 230
+L KTV ++G G +G +AK L GV+ ++ R++ ++ LA G
Sbjct: 163 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYE-------RAVELARDLGGEA 215
Query: 231 DDLVDEKGCHEDIFEFASKADVVVCC 256
+++ + +++DVVV
Sbjct: 216 VRF-------DELVDHLARSDVVVSA 234
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 29.9 bits (68), Expect = 1.1
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 180 VFILGFGNIGVELAKRL--RPFGVKII 204
V I+G LA+ + R +GV II
Sbjct: 3 VIIIGGETTAYYLARSMLSRKYGVVII 29
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 30.1 bits (69), Expect = 1.2
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 241 EDIFEFASKADVVVCC-LSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285
+I ++AD+++ L ++ +V S + M+ GS++V++A
Sbjct: 222 AEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 30.1 bits (69), Expect = 1.2
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 241 EDIFEFASKADVVVCC-LSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285
+I + AD+++ L + +V + LS MK+G+++V++A
Sbjct: 221 ANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 30.3 bits (68), Expect = 1.3
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 171 TGETLLGKTVFILGFG--NIGVELAKRLRPFGVKIIAT 206
G T K V I G G +IG E+ + L G K++ T
Sbjct: 669 NGVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT 706
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 177 GKTVFILGFG--NIGVELAKRLRPFGVKIIAT 206
K V I G G +IG E+ + L G K++ T
Sbjct: 476 DKYVLITGAGKGSIGAEVLQGLLQGGAKVVVT 507
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 29.9 bits (68), Expect = 1.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 177 GKTVFILGFGNIGVELAKRLRPFGVKIIAT 206
GK V + G+G +G L+ G + T
Sbjct: 220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVT 249
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 28.8 bits (65), Expect = 1.4
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 178 KTVFILGFGNIGVELAKRLRPFGVKIIA 205
++G GV L + L G K++A
Sbjct: 7 YEYIVIGSEAAGVGLVRELTAAGKKVLA 34
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 29.9 bits (68), Expect = 1.4
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 168 GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 206
LG TV ++G G IG+ + +G ++ T
Sbjct: 160 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCT 198
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 29.7 bits (68), Expect = 1.4
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 241 EDIFEFASKADVVVCC-LSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285
++ +AD+V+ L + +V+ S ++ MK G++LV+IA
Sbjct: 223 YELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 29.6 bits (67), Expect = 1.6
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 17/54 (31%)
Query: 245 EFASKADVVVCCLSLNKQTAGI--------VNKSFLSSMKKGSLLVNIA--RGG 288
E +K D+V+ TA I V + L SMK GS++V++A RGG
Sbjct: 271 EHIAKQDIVIT-------TALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGG 317
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 29.5 bits (67), Expect = 1.6
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 17/54 (31%)
Query: 245 EFASKADVVVCCLSLNKQTAGI--------VNKSFLSSMKKGSLLVNIA--RGG 288
+ +K D+V+ TA + V + + M+ GS++V++A GG
Sbjct: 261 DAITKFDIVIT-------TALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGG 307
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine
catabolism, NADP+, structural GEN riken structural
genomics/proteomics initiative; HET: NDP; 1.80A {Thermus
thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Length = 289
Score = 29.5 bits (67), Expect = 1.6
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 231 DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV 282
+E G E ++A V+ CL ++ + + +++G+ V
Sbjct: 37 LRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAE-ALYPYLREGTYWV 87
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 29.2 bits (65), Expect = 1.6
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
V I G G+ G L ++ G ++ R+
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVVFGSRN 51
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 29.6 bits (67), Expect = 1.8
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 173 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD 232
L GK V I+G G G+ +R G+ I R A + S A +NG
Sbjct: 33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR--ASWRKATENGFKVG 90
Query: 233 LVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV 282
+E +AD+V+ + + V ++ MK G+ L
Sbjct: 91 TYEEL---------IPQADLVINLTPDKQHSD--VVRTVQPLMKDGAALG 129
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism,
tartaric acid, target 11128H, NYSGXRC, PSI-2, structural
genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Length = 303
Score = 29.5 bits (67), Expect = 1.9
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 245 EFASKADVVVCCLSLNKQTAGIV--NKSFLSSMKKGSLLV 282
EFA D +V + Q ++ MK GS ++
Sbjct: 60 EFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVM 99
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.0 bits (64), Expect = 2.0
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 182 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDE 236
I G GN+G + G ++ + + +AV + L +
Sbjct: 24 IFGKGNMGQAIGHNFEIAGHEVTYYGSK--DQATTLGEIVIMAVPYPALAALAKQ 76
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 29.6 bits (67), Expect = 2.0
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 17/54 (31%)
Query: 245 EFASKADVVVCCLSLNKQTAGI--------VNKSFLSSMKKGSLLVNIA--RGG 288
A + D++V TA I + + + SMK GS++V++A GG
Sbjct: 251 AQAKEVDIIVT-------TALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGG 297
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics,
northeast structural genomics consortiu PSI-biology,
calponin-homology domain; NMR {Homo sapiens}
Length = 126
Score = 28.4 bits (63), Expect = 2.0
Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 7/118 (5%)
Query: 152 LRKQNEMRMAIEQ-KKLGVPTGETLLGKTVFILGF--GNIGVELAKRLRPFGVKIIATKR 208
+ + + L P + G + L +RL P ++ + +
Sbjct: 11 MNSAEQTVTWLITLGVLESPKKTISDPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPEP 70
Query: 209 SWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGI 266
S + + + + D D+++ + V+ ++LNK TA I
Sbjct: 71 RSESECLSNIREFLRGCGASLRLETFDA----NDLYQGQNFNKVLSSLVTLNKVTADI 124
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1;
transhydrogenase domain I, oxidoreductase; 1.81A
{Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB:
1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A*
2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Length = 384
Score = 29.2 bits (66), Expect = 2.1
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 17/54 (31%)
Query: 245 EFASKADVVVCCLSLNKQTAGI--------VNKSFLSSMKKGSLLVNIA--RGG 288
+ K D+ + TA I + + ++ MK GS+++++A GG
Sbjct: 253 KELVKTDIAIT-------TALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGG 299
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 29.0 bits (65), Expect = 2.1
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKG 238
+ +GFG +A LR G + A + + A + G+
Sbjct: 26 KLGFIGFGEAASAIASGLRQAGAIDM-----AAYDAASAESWRPRAEELGVSC------- 73
Query: 239 CHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLV 282
+ E A + DV+ ++ + + + + +G+L
Sbjct: 74 -KASVAEVAGECDVIFSLVT-AQAALEVA-QQAGPHLCEGALYA 114
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 29.2 bits (65), Expect = 2.2
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 16/76 (21%)
Query: 182 ILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHE 241
+GFG + LA RLR GV+++ + S + A G+ +
Sbjct: 5 FIGFGEVAQTLASRLRSRGVEVVTSLEG------RSPSTIERARTVGVTETSE------- 51
Query: 242 DIFEFASKADVVVCCL 257
E VV+ +
Sbjct: 52 ---EDVYSCPVVISAV 64
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 29.4 bits (66), Expect = 2.4
Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 49/150 (32%)
Query: 171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 230
T + GK + G+G++G A+ LR G + T+ I
Sbjct: 271 TDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTE----------------------I 308
Query: 231 DDLVDEKGCHE-----DIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIA 285
D + + E + A KAD+ V + N ++N + +M+ +++ NI
Sbjct: 309 DPICALQAAMEGYRVVTMEYAADKADIFVTA-TGNY---HVINHDHMKAMRHNAIVCNI- 363
Query: 286 RGGLLDYEAIAHYLECGHLGGLGIDVAWTE 315
G D E IDVA T
Sbjct: 364 --GHFDSE---------------IDVASTR 376
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 29.4 bits (66), Expect = 2.4
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 39/145 (26%)
Query: 171 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGII 230
T + GK V I G+G++G A+ ++ G ++ T ++ ++ A+ G
Sbjct: 268 TDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVT--------EIDPINALQAMMEGFD 319
Query: 231 DDLVDEKGCHEDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLL 290
V+ E AD+VV + NK I+ + +MK ++L NI G
Sbjct: 320 VVTVE---------EAIGDADIVVTA-TGNK---DIIMLEHIKAMKDHAILGNI---GHF 363
Query: 291 DYEAIAHYLECGHLGGLGIDVAWTE 315
D E ID+A E
Sbjct: 364 DNE---------------IDMAGLE 373
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 28.1 bits (63), Expect = 2.4
Identities = 8/18 (44%), Positives = 15/18 (83%)
Query: 309 IDVAWTEPFDPNDPILKF 326
I++ WT+PFD N P++++
Sbjct: 36 INLTWTKPFDGNSPLIRY 53
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 28.5 bits (64), Expect = 2.7
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 309 IDVAWTEPFDPNDPILKF 326
++ W + D PIL +
Sbjct: 21 AEIHWEQQGDNRSPILHY 38
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 27.6 bits (61), Expect = 2.7
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 309 IDVAWTEPFDPNDPILKFK 327
+ + W P + PI+ FK
Sbjct: 19 VMLRWMVPRNDGLPIVIFK 37
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Length = 325
Score = 28.3 bits (64), Expect = 3.7
Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 182 ILGFGNIGVELAKRL---------RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDD 232
++G GN+G+ + + + V ++ RS+AS + + + N
Sbjct: 9 LMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNL---DISSIISNKEKTG 65
Query: 233 LVDEKGCHEDIFEFASKADVVV 254
+ ++ AD++V
Sbjct: 66 RISDRAFSGPEDLMGEAADLLV 87
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 28.3 bits (63), Expect = 3.7
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 9/86 (10%)
Query: 178 KTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNG----IIDD 232
+ ++G G IG +AK G R + S + K +
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 64
Query: 233 LVDEKGCHEDIFEFASKADVVVCCLS 258
+ D H + E DVV+ +
Sbjct: 65 IDD----HASLVEAVKNVDVVISTVG 86
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 28.5 bits (64), Expect = 3.8
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 170 PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
T G V I+G GN G ++ + T+
Sbjct: 156 STPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHE 195
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 27.7 bits (61), Expect = 5.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 177 GKTVFILGFGNIGVELAKRL 196
G + +LG G +G +A L
Sbjct: 19 GMKIAVLGTGTVGRTMAGAL 38
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 27.9 bits (63), Expect = 5.3
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 231 DDLVDEKG-CHEDIFEFASKADVVVCCLSLNKQTAGIV-NKSFLSSMKKGSLLV 282
L HE A AD+VV L ++ + ++MK GSL +
Sbjct: 68 ASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFL 121
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 28.0 bits (63), Expect = 5.6
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 168 GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIAT 206
GV G TV ILG G IG+ + R G +I +
Sbjct: 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILS 213
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1}
PDB: 3jsa_A*
Length = 331
Score = 27.6 bits (62), Expect = 6.8
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 12/83 (14%)
Query: 182 ILGFGNIGVELAKRL----------RPFGVKIIATKRSWASHSQVSCQSSALAVKNGIID 231
I G GN+G+ L + + F V +A + ++ + G +D
Sbjct: 11 IFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLD 70
Query: 232 DLVDEKGCHEDIFEFASKADVVV 254
L E + D+VV
Sbjct: 71 SLEYESISASEALA--RDFDIVV 91
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 27.5 bits (62), Expect = 7.3
Identities = 15/109 (13%), Positives = 35/109 (32%), Gaps = 26/109 (23%)
Query: 181 FILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH 240
I G G + + K L+ ++I + S ++ ++
Sbjct: 8 II-GVGKMASAIIKGLKQTPHELIISGSSLER-----------------SKEIAEQLALP 49
Query: 241 --EDIFEFASKADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARG 287
+ + D+V+ L + Q V L + ++++A G
Sbjct: 50 YAMSHQDLIDQVDLVI--LGIKPQLFETV----LKPLHFKQPIISMAAG 92
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 27.5 bits (62), Expect = 7.4
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 245 EFASKADVVVCCLSLNKQTAGIV--NKSFLSSMKKGSLLV 282
+ A+ +D++ L ++ LS+ K G+++V
Sbjct: 56 KVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIV 95
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 27.3 bits (60), Expect = 8.1
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 180 VFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGC 239
V I+G GNIG +L + + I + + V + + V E
Sbjct: 15 VLIIGMGNIGKKLVELG---NFEKIYAYDRISKDIPGVVRLDEFQVPSDV--STVVECAS 69
Query: 240 HEDIFEFASKA 250
E + E++ +
Sbjct: 70 PEAVKEYSLQI 80
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase;
HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3
d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Length = 358
Score = 27.2 bits (61), Expect = 8.7
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 180 VFILGFGNIGVELAKRLR 197
V ++G G +G +L
Sbjct: 7 VAVIGAGVVGSAFLDQLL 24
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 27.2 bits (60), Expect = 9.5
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 177 GKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSWASH 213
G++V ++G + +L + L P I +
Sbjct: 212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDI 249
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 26.8 bits (59), Expect = 9.9
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 179 TVFILGFGNIGVELAKRLRPFGVKIIATKRS 209
V ILG G+ LA RL G K++ R+
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRN 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.414
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,815,350
Number of extensions: 359527
Number of successful extensions: 1381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1262
Number of HSP's successfully gapped: 161
Length of query: 370
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 275
Effective length of database: 4,049,298
Effective search space: 1113556950
Effective search space used: 1113556950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)