Query 017491
Match_columns 370
No_of_seqs 196 out of 410
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 09:02:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 99.9 1.1E-23 2.3E-28 208.8 6.7 61 30-91 231-291 (526)
2 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 6.7E-23 1.4E-27 153.7 6.2 50 125-174 2-51 (51)
3 TIGR01557 myb_SHAQKYF myb-like 99.8 1.4E-21 2.9E-26 148.2 6.5 56 34-89 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.3 0.00073 1.6E-08 48.4 5.7 48 36-87 1-48 (48)
5 smart00426 TEA TEA domain. 92.1 0.16 3.5E-06 40.9 3.2 46 38-85 5-67 (68)
6 PF14379 Myb_CC_LHEQLE: MYB-CC 90.7 0.53 1.1E-05 36.2 4.6 34 139-173 6-39 (51)
7 PF15235 GRIN_C: G protein-reg 75.9 2.1 4.7E-05 38.7 2.5 19 145-163 70-88 (137)
8 PF12776 Myb_DNA-bind_3: Myb/S 62.9 10 0.00022 29.8 3.6 52 38-89 1-64 (96)
9 smart00501 BRIGHT BRIGHT, ARID 53.1 13 0.00029 29.8 2.7 46 41-87 32-84 (93)
10 cd00167 SANT 'SWI3, ADA2, N-Co 50.7 63 0.0014 21.0 5.3 44 38-86 1-44 (45)
11 smart00717 SANT SANT SWI3, AD 47.6 79 0.0017 20.7 5.5 45 37-86 2-46 (49)
12 PF07384 DUF1497: Protein of u 31.7 37 0.00081 26.7 2.1 22 37-58 36-57 (59)
13 TIGR02399 salt_tol_Pase glucos 29.3 90 0.0019 32.7 4.9 30 139-171 162-191 (389)
14 PF01519 DUF16: Protein of unk 27.0 1E+02 0.0022 27.0 4.1 24 146-169 67-90 (102)
15 PF01285 TEA: TEA/ATTS domain 26.0 38 0.00082 35.5 1.6 55 32-86 45-112 (431)
16 cd08783 Death_MALT1 Death doma 25.2 1.2E+02 0.0027 26.3 4.2 49 34-86 35-84 (97)
17 TIGR02894 DNA_bind_RsfA transc 25.1 40 0.00087 31.4 1.5 52 31-88 43-94 (161)
18 PF09506 Salt_tol_Pase: Glucos 24.0 1.2E+02 0.0026 31.7 4.7 30 139-171 156-185 (381)
19 KOG3841 TEF-1 and related tran 20.4 77 0.0017 33.5 2.5 53 34-88 74-143 (455)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=1.1e-23 Score=208.76 Aligned_cols=61 Identities=48% Similarity=0.759 Sum_probs=57.9
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcCCC
Q 017491 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ 91 (370)
Q Consensus 30 s~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~~ 91 (370)
...+|+||+||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+.++
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence 34678999999999999999999999 79999999999999999999999999999999875
No 2
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.88 E-value=6.7e-23 Score=153.71 Aligned_cols=50 Identities=74% Similarity=0.922 Sum_probs=46.3
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhc
Q 017491 125 VIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA 174 (370)
Q Consensus 125 ~~~~~~~~mQmEVQrRLHEQLEVQRhLQLRIEAQGKYLQsILEKAqetLa 174 (370)
+...+++++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus 2 ~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 2 MQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44567889999999999999999999999999999999999999999874
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.85 E-value=1.4e-21 Score=148.20 Aligned_cols=56 Identities=59% Similarity=0.976 Sum_probs=54.3
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcC
Q 017491 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89 (370)
Q Consensus 34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 89 (370)
|+|++||+|+|++|++||+.||+.+.||||.|+++|++++||..||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 78999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.29 E-value=0.00073 Score=48.38 Aligned_cols=48 Identities=33% Similarity=0.434 Sum_probs=41.1
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhh
Q 017491 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87 (370)
Q Consensus 36 RlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 87 (370)
|-.||+|=++.|++||.++|. + .-+.|-+.|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999992 1 4789999998 8999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=92.07 E-value=0.16 Score=40.94 Aligned_cols=46 Identities=20% Similarity=0.264 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCChh-hHHHH--------------hcCCCc--cHHHHHHhhhh
Q 017491 38 RWTVELHERFVDAVTQLGGPDKATPK-TIMRV--------------MGVKGL--TLYHLKSHLQK 85 (370)
Q Consensus 38 rWT~ELH~rFV~AV~~LGG~dkAtPK-~IL~l--------------M~V~GL--T~~hVKSHLQK 85 (370)
.|.++|-..|++|+...= ...|=| .+... -...|. |..+|.||||.
T Consensus 5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 699999999999998775 223322 12111 112444 78899999985
No 6
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=90.73 E-value=0.53 Score=36.18 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 017491 139 RRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTL 173 (370)
Q Consensus 139 rRLHEQLEVQRhLQLRIEAQGKYLQsILEKAqetL 173 (370)
--|..|+||||+|.=.+|.| |-||.=+|...+-|
T Consensus 6 EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl 39 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYL 39 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 45788999999999999999 66776677655544
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=75.91 E-value=2.1 Score=38.67 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 017491 145 LEVQRHLQLRIEAQGKYMQ 163 (370)
Q Consensus 145 LEVQRhLQLRIEAQGKYLQ 163 (370)
+-||+|||++||+|++...
T Consensus 70 ~AIQkHLE~qi~e~~~q~~ 88 (137)
T PF15235_consen 70 MAIQKHLERQIEEHERQRA 88 (137)
T ss_pred HHHHHHHHHHHHHhhhccc
Confidence 3589999999999987663
No 8
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=62.92 E-value=10 Score=29.76 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHHHHhh---CCC-CCCChh-----hHHHHhcC---CCccHHHHHHhhhhhhcC
Q 017491 38 RWTVELHERFVDAVTQL---GGP-DKATPK-----TIMRVMGV---KGLTLYHLKSHLQKFRLG 89 (370)
Q Consensus 38 rWT~ELH~rFV~AV~~L---GG~-dkAtPK-----~IL~lM~V---~GLT~~hVKSHLQKYRl~ 89 (370)
+||++..+-||+.+-+. |.- .....| .|.+.++- -.+|..||++|+...|..
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD 64 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 69999999999988333 433 233333 45555554 455889999998876553
No 9
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=53.09 E-value=13 Score=29.83 Aligned_cols=46 Identities=26% Similarity=0.439 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCC----hhhHHHHhcCCCc---cHHHHHHhhhhhh
Q 017491 41 VELHERFVDAVTQLGGPDKAT----PKTIMRVMGVKGL---TLYHLKSHLQKFR 87 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAt----PK~IL~lM~V~GL---T~~hVKSHLQKYR 87 (370)
-+|++.|+ +|..+||.++.+ =+.|.+.||++.- ...++|+|-+||=
T Consensus 32 vdL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L 84 (93)
T smart00501 32 LDLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYL 84 (93)
T ss_pred CcHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHh
Confidence 47999998 588999987554 2478889999742 3677888888883
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=50.67 E-value=63 Score=20.99 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=33.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 38 RWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 38 rWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
.||+|=+..|+.++.++|- ..=+.|-+.|+ +=|..+|+.|..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999992 23456777663 46788888876543
No 11
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=47.61 E-value=79 Score=20.75 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=33.3
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 37 LRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 37 lrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
-.||++=...|+.+|.++| . ..=+.|-+.|+ +=|...|+.+-..+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~~~ 46 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWNNL 46 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 4699999999999999999 1 22456666654 66788887775543
No 12
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=31.72 E-value=37 Score=26.69 Aligned_cols=22 Identities=23% Similarity=0.620 Sum_probs=19.3
Q ss_pred ccCCHHHHHHHHHHHHhhCCCC
Q 017491 37 LRWTVELHERFVDAVTQLGGPD 58 (370)
Q Consensus 37 lrWT~ELH~rFV~AV~~LGG~d 58 (370)
-++..|+|..|-+-|..|||-+
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999853
No 13
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=29.34 E-value=90 Score=32.69 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 017491 139 RRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQ 171 (370)
Q Consensus 139 rRLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe 171 (370)
-.+++..|+|+.||..++ +-|+.+|++|..
T Consensus 162 ~~v~~d~~~~~~LQ~~~~---~lM~~Ll~~A~~ 191 (389)
T TIGR02399 162 DLVKDDSEIRKILQKSFE---DLMNELMYKAKT 191 (389)
T ss_pred HHccchHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 457777888999999887 578999999854
No 14
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=26.95 E-value=1e+02 Score=26.96 Aligned_cols=24 Identities=42% Similarity=0.501 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 017491 146 EVQRHLQLRIEAQGKYMQSILEKA 169 (370)
Q Consensus 146 EVQRhLQLRIEAQGKYLQsILEKA 169 (370)
|.=+.||.+|.+||+-|++|++.-
T Consensus 67 EqIkel~~e~k~qgktL~~I~~~L 90 (102)
T PF01519_consen 67 EQIKELQVEQKAQGKTLQLILKTL 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334789999999999999998754
No 15
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=26.03 E-value=38 Score=35.46 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCCCCccCCHHHHHHHHHHHHhhCCCCCCChh----------hHHHHhcC-CC--ccHHHHHHhhhhh
Q 017491 32 DPKPRLRWTVELHERFVDAVTQLGGPDKATPK----------TIMRVMGV-KG--LTLYHLKSHLQKF 86 (370)
Q Consensus 32 ~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK----------~IL~lM~V-~G--LT~~hVKSHLQKY 86 (370)
+.+..-+|++++...|++|+...---...+-+ -|-+-... .| =|+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 45788899999999999999776311112211 11111111 23 3788999999988
No 16
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=25.16 E-value=1.2e+02 Score=26.30 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=39.2
Q ss_pred CCCccCCH-HHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 34 KPRLRWTV-ELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 34 KpRlrWT~-ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
..|||-++ ||+++-...+..-| .--|.+|+.|++.|=|+.++-.-||+-
T Consensus 35 ~~~fr~S~~el~~cslkvl~p~g----SPsk~LL~~~~~rg~Tv~~Ll~~L~~M 84 (97)
T cd08783 35 RGRFRLSCLDLEQCSLKVLEPEG----SPSRSLLKLLGERGCTVTELSEFLQAM 84 (97)
T ss_pred CCccccCHHHHHHHHHHHhcCCC----CchHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 34888887 88887777766555 456899999999999999999988863
No 17
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.14 E-value=40 Score=31.39 Aligned_cols=52 Identities=21% Similarity=0.329 Sum_probs=38.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhc
Q 017491 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88 (370)
Q Consensus 31 ~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 88 (370)
|..-..|||+..+-..+.+||...- -.+-.++.. ...||+.+|-+-||.|..
T Consensus 43 TsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 43 TAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred cHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 4556899999999999999997643 111111111 367999999999999964
No 18
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=24.03 E-value=1.2e+02 Score=31.73 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 017491 139 RRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQ 171 (370)
Q Consensus 139 rRLHEQLEVQRhLQLRIEAQGKYLQsILEKAqe 171 (370)
-.+++..+.|+.||..++ +-|+.+|++|..
T Consensus 156 ~~~~~d~~~~~~LQ~~~~---~lM~~Ll~~A~~ 185 (381)
T PF09506_consen 156 DLVPDDVERQQQLQQMMQ---ELMNELLEKAEA 185 (381)
T ss_pred HHhcccHHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 456677788899998887 578999999854
No 19
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=20.35 E-value=77 Score=33.53 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=32.7
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHH--------------HhcC---CCccHHHHHHhhhhhhc
Q 017491 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMR--------------VMGV---KGLTLYHLKSHLQKFRL 88 (370)
Q Consensus 34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~--------------lM~V---~GLT~~hVKSHLQKYRl 88 (370)
-.-=+|+++..+.|.||+...- .--+=|-||. -.+. +-=|+.+|.||.|..-.
T Consensus 74 daegvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlar 143 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR 143 (455)
T ss_pred ccccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 3445899999999999997763 1122233332 1122 33467788888886543
Done!