Query 017491
Match_columns 370
No_of_seqs 196 out of 410
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 15:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 6.1E-29 2.1E-33 192.0 7.0 61 30-91 1-61 (64)
2 2yus_A SWI/SNF-related matrix- 88.8 1.4 4.7E-05 34.5 7.0 47 34-86 16-62 (79)
3 2hzd_A Transcriptional enhance 88.1 0.39 1.3E-05 38.8 3.5 56 33-90 3-75 (82)
4 2cu7_A KIAA1915 protein; nucle 85.9 2.2 7.5E-05 32.1 6.5 50 34-89 7-56 (72)
5 2yum_A ZZZ3 protein, zinc fing 85.6 1.5 5.2E-05 32.9 5.5 54 34-90 6-62 (75)
6 2xag_B REST corepressor 1; ami 82.4 2.4 8.2E-05 43.4 7.0 52 34-91 378-429 (482)
7 2iw5_B Protein corest, REST co 81.6 2.5 8.5E-05 39.8 6.2 54 31-90 128-181 (235)
8 2cqq_A RSGI RUH-037, DNAJ homo 78.5 3.5 0.00012 31.8 5.2 48 36-89 8-58 (72)
9 1x41_A Transcriptional adaptor 77.8 2.4 8.1E-05 30.8 3.9 51 33-88 5-55 (60)
10 2kes_A Synphilin-1; synphillin 62.0 9.9 0.00034 27.9 4.1 24 136-159 15-42 (48)
11 3sjm_A Telomeric repeat-bindin 60.4 24 0.00081 26.2 6.1 50 30-82 5-54 (64)
12 2elk_A SPCC24B10.08C protein; 60.2 9.6 0.00033 27.5 3.9 47 36-87 9-56 (58)
13 2cqr_A RSGI RUH-043, DNAJ homo 58.1 23 0.00079 27.3 5.9 51 36-89 18-69 (73)
14 2eqr_A N-COR1, N-COR, nuclear 56.1 32 0.0011 25.0 6.2 46 31-82 7-52 (61)
15 1ity_A TRF1; helix-turn-helix, 51.2 36 0.0012 25.0 5.8 52 32-86 6-57 (69)
16 1guu_A C-MYB, MYB proto-oncoge 50.6 36 0.0012 23.4 5.4 46 36-86 3-48 (52)
17 2d9a_A B-MYB, MYB-related prot 48.5 59 0.002 23.0 6.5 49 33-86 5-53 (60)
18 2yqk_A Arginine-glutamic acid 47.2 18 0.00062 26.7 3.6 46 33-83 6-51 (63)
19 2ba2_A D12_ORF131, hypothetica 43.8 26 0.0009 28.5 4.2 21 149-169 53-73 (85)
20 2cjj_A Radialis; plant develop 39.6 59 0.002 26.1 5.8 49 37-88 9-58 (93)
21 1gvd_A MYB proto-oncogene prot 36.6 77 0.0026 21.8 5.4 46 36-86 3-48 (52)
22 1wgx_A KIAA1903 protein; MYB D 36.4 78 0.0027 24.6 5.8 46 38-86 10-56 (73)
23 2li6_A SWI/SNF chromatin-remod 34.8 7 0.00024 32.0 -0.4 45 41-88 49-97 (116)
24 2crg_A Metastasis associated p 33.4 38 0.0013 25.5 3.6 47 32-83 4-50 (70)
25 2lm1_A Lysine-specific demethy 32.8 16 0.00055 29.1 1.4 45 41-86 44-94 (107)
26 2dim_A Cell division cycle 5-l 31.6 1.5E+02 0.005 21.7 6.4 49 33-86 6-54 (70)
27 2rq5_A Protein jumonji; develo 31.5 18 0.00062 30.3 1.6 47 41-88 42-95 (121)
28 4eef_G F-HB80.4, designed hema 31.5 18 0.00063 28.6 1.5 46 36-84 20-66 (74)
29 1c20_A DEAD ringer protein; DN 28.7 21 0.00071 29.6 1.5 47 41-88 52-105 (128)
30 2cxy_A BAF250B subunit, HBAF25 28.4 21 0.00072 29.5 1.4 45 41-86 51-101 (125)
31 1kkx_A Transcription regulator 27.6 16 0.00055 30.5 0.6 45 41-88 48-96 (123)
32 2jxj_A Histone demethylase jar 27.5 22 0.00074 27.8 1.3 45 41-86 36-86 (96)
33 2eqy_A RBP2 like, jumonji, at 27.4 24 0.00083 29.1 1.7 47 41-88 42-94 (122)
34 2jrz_A Histone demethylase jar 26.7 23 0.00078 29.0 1.3 46 41-87 40-91 (117)
35 1qgp_A Protein (double strande 22.6 99 0.0034 23.3 4.2 44 40-86 12-55 (77)
36 2k9n_A MYB24; R2R3 domain, DNA 22.0 1.6E+02 0.0056 23.0 5.5 45 36-86 53-97 (107)
37 2kk0_A AT-rich interactive dom 21.5 37 0.0013 28.8 1.7 46 41-87 64-116 (145)
38 1ig6_A MRF-2, modulator recogn 20.5 17 0.00059 29.1 -0.5 46 41-87 33-85 (107)
39 1w0t_A Telomeric repeat bindin 20.4 2.2E+02 0.0075 19.6 6.1 48 36-86 2-49 (53)
40 1gv2_A C-MYB, MYB proto-oncoge 20.3 1.5E+02 0.0052 22.8 5.0 46 35-86 55-100 (105)
41 2aje_A Telomere repeat-binding 20.1 1.8E+02 0.006 23.9 5.4 52 31-85 8-61 (105)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=6.1e-29 Score=191.99 Aligned_cols=61 Identities=48% Similarity=0.792 Sum_probs=57.8
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcCCC
Q 017491 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ 91 (370)
Q Consensus 30 s~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~~ 91 (370)
++.+|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+.+.
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999 79999999999999999999999999999998753
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=88.78 E-value=1.4 Score=34.45 Aligned_cols=47 Identities=11% Similarity=0.096 Sum_probs=39.1
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
..+-.||+|=+++|++||+.+|+ .=+.|-+.| ++=|..+++.|-++|
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHh
Confidence 34678999999999999999993 235777776 478999999999887
No 3
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=88.11 E-value=0.39 Score=38.80 Aligned_cols=56 Identities=21% Similarity=0.279 Sum_probs=36.1
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHh----c-----------C--CCccHHHHHHhhhhhhcCC
Q 017491 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVM----G-----------V--KGLTLYHLKSHLQKFRLGK 90 (370)
Q Consensus 33 ~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM----~-----------V--~GLT~~hVKSHLQKYRl~~ 90 (370)
++..=+|.++|-..|++|++..--.... |.+|..- | . +-=|+.+|.||||.-+..+
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 4556689999999999999887511112 2222111 1 1 2337889999999876543
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=85.87 E-value=2.2 Score=32.05 Aligned_cols=50 Identities=20% Similarity=0.371 Sum_probs=40.4
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcC
Q 017491 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89 (370)
Q Consensus 34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~ 89 (370)
..+-.||+|=++.|+++|..+|- .=+.|-+. ++|=|-.+|+.|-++|-..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 34668999999999999999993 34566665 4789999999998888543
No 5
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.63 E-value=1.5 Score=32.91 Aligned_cols=54 Identities=19% Similarity=0.322 Sum_probs=40.4
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCChh---hHHHHhcCCCccHHHHHHhhhhhhcCC
Q 017491 34 KPRLRWTVELHERFVDAVTQLGGPDKATPK---TIMRVMGVKGLTLYHLKSHLQKFRLGK 90 (370)
Q Consensus 34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK---~IL~lM~V~GLT~~hVKSHLQKYRl~~ 90 (370)
..+-.||+|=++.|+++|..+| .+...|. .|-+.| +|=|..+|+.|-++|-...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 3455899999999999999999 2221123 454554 7899999999999996543
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=82.38 E-value=2.4 Score=43.36 Aligned_cols=52 Identities=27% Similarity=0.390 Sum_probs=43.8
Q ss_pred CCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcCCC
Q 017491 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ 91 (370)
Q Consensus 34 KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~~ 91 (370)
+..-+||+|=|..|++||.+.|- .=+.|-+.++-. |..+|++|.++||....
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 55789999999999999999992 466788886654 99999999999988654
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=81.57 E-value=2.5 Score=39.83 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=44.8
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhcCC
Q 017491 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90 (370)
Q Consensus 31 ~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~ 90 (370)
+..+..-+||+|=++.|++|+...|- .=..|-++ |++=|..+||+|-.+||...
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 34567789999999999999999992 25677776 57889999999999998654
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=78.51 E-value=3.5 Score=31.77 Aligned_cols=48 Identities=17% Similarity=0.363 Sum_probs=38.3
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCChh---hHHHHhcCCCccHHHHHHhhhhhhcC
Q 017491 36 RLRWTVELHERFVDAVTQLGGPDKATPK---TIMRVMGVKGLTLYHLKSHLQKFRLG 89 (370)
Q Consensus 36 RlrWT~ELH~rFV~AV~~LGG~dkAtPK---~IL~lM~V~GLT~~hVKSHLQKYRl~ 89 (370)
.-.||.|=+++|++|+..+++ -||. .|-+.| |=|..+|+.|-+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 447999999999999999983 3566 455555 67999999998887554
No 9
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=77.77 E-value=2.4 Score=30.85 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=39.8
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhhhc
Q 017491 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88 (370)
Q Consensus 33 ~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl 88 (370)
.-.+-.||+|=.+++++||..+| .. .=+.|-+.| +|=|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~~--~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-FG--NWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-TT--CHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-cC--cHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34566899999999999999999 21 234666666 68899999999888744
No 10
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=62.01 E-value=9.9 Score=27.87 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=18.6
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHh
Q 017491 136 EVQRRLHEQ----LEVQRHLQLRIEAQG 159 (370)
Q Consensus 136 EVQrRLHEQ----LEVQRhLQLRIEAQG 159 (370)
.+-|+|+|| +.+|.+||.-+|+|-
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445788888 568999999888873
No 11
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=60.36 E-value=24 Score=26.23 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=35.8
Q ss_pred cCCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHh
Q 017491 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82 (370)
Q Consensus 30 s~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSH 82 (370)
++..+.|-.||+|=-+..+++|+++|- . .=+.|.+.+...|=|-.+++-+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~R 54 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDR 54 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHH
Confidence 445566778999999999999999992 1 2447888777778788887754
No 12
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=60.16 E-value=9.6 Score=27.54 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=35.9
Q ss_pred CccCCHHHHHHHHHHHHhhC-CCCCCChhhHHHHhcCCCccHHHHHHhhhhhh
Q 017491 36 RLRWTVELHERFVDAVTQLG-GPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87 (370)
Q Consensus 36 RlrWT~ELH~rFV~AV~~LG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR 87 (370)
+-.||+|=++++++||++.| +- =+.|-+.|+. |=|..+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 44699999999999999999 32 3456665532 678899999887764
No 13
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=58.09 E-value=23 Score=27.25 Aligned_cols=51 Identities=12% Similarity=0.079 Sum_probs=39.8
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCChhhHHHH-hcCCCccHHHHHHhhhhhhcC
Q 017491 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRV-MGVKGLTLYHLKSHLQKFRLG 89 (370)
Q Consensus 36 RlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~l-M~V~GLT~~hVKSHLQKYRl~ 89 (370)
+-.||.|=...|++||..+|- -+|..--++ --|+|=|-.+|+.|-+.+...
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 446999999999999999992 377755443 235899999999998877543
No 14
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.15 E-value=32 Score=25.01 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=35.1
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHh
Q 017491 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82 (370)
Q Consensus 31 ~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSH 82 (370)
..++..-.||+|=|+.|++|+...| . .=..|-.. |++=|..+|..|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHHH
Confidence 3456778999999999999999998 2 23466544 578888888755
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=51.20 E-value=36 Score=25.03 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=40.7
Q ss_pred CCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 32 DPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 32 ~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
.++.|-.||+|=-+..+++|+.+| .. .=+.|.+.|...|=|-.+++-+-..|
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G-~~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYG-EG--NWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHC-SS--CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-CC--cHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 456788999999999999999999 11 23578888765578888888776665
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=50.62 E-value=36 Score=23.45 Aligned_cols=46 Identities=28% Similarity=0.302 Sum_probs=35.9
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 36 RlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
|-.||+|=.+.++++|+++|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999993 1345666654 688888988887666
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=48.46 E-value=59 Score=23.04 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=37.6
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 33 ~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
...|-.||+|=.++++++|.++|- . .=+.|-+.| +|=|-.+++.|-.+|
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQ-Q--DWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCT-T--CHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-C--CHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 456778999999999999999992 1 224566654 678889998887766
No 18
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.21 E-value=18 Score=26.73 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=31.7
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhh
Q 017491 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83 (370)
Q Consensus 33 ~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHL 83 (370)
...+-.||+|=|+.|.+|+...| .. =..|-+.| |+.=|..+|..+-
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yG--Kd--f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYG--KN--FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTC--SC--HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CcCCCCcCHHHHHHHHHHHHHhC--cc--HHHHHHHH-cCCCcHHHHHHHH
Confidence 33456899999999999999999 22 23443311 5667777776543
No 19
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=43.75 E-value=26 Score=28.53 Aligned_cols=21 Identities=48% Similarity=0.599 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 017491 149 RHLQLRIEAQGKYMQSILEKA 169 (370)
Q Consensus 149 RhLQLRIEAQGKYLQsILEKA 169 (370)
+.||+-+.|||+-|+.||+--
T Consensus 53 keLq~eqkaQg~tl~lil~tL 73 (85)
T 2ba2_A 53 KELQVEQKAQGKTLQLILEAL 73 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999998754
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=39.62 E-value=59 Score=26.06 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=37.1
Q ss_pred ccCCHHHHHHHHHHHHhhCCCCCCChhhHHH-HhcCCCccHHHHHHhhhhhhc
Q 017491 37 LRWTVELHERFVDAVTQLGGPDKATPKTIMR-VMGVKGLTLYHLKSHLQKFRL 88 (370)
Q Consensus 37 lrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~-lM~V~GLT~~hVKSHLQKYRl 88 (370)
-.||.|=.+.|++|+..+| . -+|..--+ .--|+|=|-.+|+.|-+++..
T Consensus 9 ~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD-K--DTPDRWANVARAVEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4699999999999999998 2 25553322 223479999999999888753
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=36.63 E-value=77 Score=21.79 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=34.7
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 36 RlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
+-.||+|=.+.++++|.++|- . .=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~-~--~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 1 123555554 678888888887666
No 22
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=36.43 E-value=78 Score=24.62 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCChhhHHHH-hcCCCccHHHHHHhhhhh
Q 017491 38 RWTVELHERFVDAVTQLGGPDKATPKTIMRV-MGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 38 rWT~ELH~rFV~AV~~LGG~dkAtPK~IL~l-M~V~GLT~~hVKSHLQKY 86 (370)
.||.+=+++|.+|+..++ +.||-.--++ .-|+|=|.++|+.|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 599999999999999987 3478765543 346889999999886655
No 23
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=34.80 E-value=7 Score=31.98 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hhHHHHhcCCCccHHHHHHhhhhhhc
Q 017491 41 VELHERFVDAVTQLGGPDKATP----KTIMRVMGVKGLTLYHLKSHLQKFRL 88 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtP----K~IL~lM~V~GLT~~hVKSHLQKYRl 88 (370)
-+||..|.. |..+||.++.+- +.|.+.||++. -..+++|-.||=+
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 478888875 789999987664 37888999987 5778888888743
No 24
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=33.41 E-value=38 Score=25.54 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=34.5
Q ss_pred CCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhh
Q 017491 32 DPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83 (370)
Q Consensus 32 ~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHL 83 (370)
.++..-.||+|=|+.|.+|+...| .. =..|-+. =|++-|..+|..+-
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG--Kd--f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG--KD--FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC--SC--HHHHHHT-TCSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC--cc--HHHHHHH-HcCCCCHHHHHHHH
Confidence 456777999999999999999999 22 3444431 16777888887665
No 25
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=32.80 E-value=16 Score=29.06 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----hHHHHhcCCCcc--HHHHHHhhhhh
Q 017491 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT--LYHLKSHLQKF 86 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtPK----~IL~lM~V~GLT--~~hVKSHLQKY 86 (370)
-+||+.|.. |..+||.++.+-+ .|.+.||++.-| -..++.|-.||
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 479999986 6789999876643 678889997533 35677766666
No 26
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.56 E-value=1.5e+02 Score=21.67 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=38.2
Q ss_pred CCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 33 ~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
...|=.||+|=.++++++|..+| . -.=+.|-+.|+ |=|-.+++-|-..|
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G-~--~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYG-K--NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTC-S--SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34566899999999999999999 1 12356777664 88999999887776
No 27
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=31.53 E-value=18 Score=30.28 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCChh----hHHHHhcCCCcc---HHHHHHhhhhhhc
Q 017491 41 VELHERFVDAVTQLGGPDKATPK----TIMRVMGVKGLT---LYHLKSHLQKFRL 88 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtPK----~IL~lM~V~GLT---~~hVKSHLQKYRl 88 (370)
-+|+..|. +|..+||.++.|-+ .|...|+++... .+.++.|-.||=+
T Consensus 42 lDL~~Ly~-~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 42 LDLACFFR-LINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp CCHHHHHH-HHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred ccHHHHHH-HHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 36787776 67799999877754 677889986542 4677877777744
No 28
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=31.46 E-value=18 Score=28.65 Aligned_cols=46 Identities=28% Similarity=0.308 Sum_probs=35.1
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHh-cCCCccHHHHHHhhh
Q 017491 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVM-GVKGLTLYHLKSHLQ 84 (370)
Q Consensus 36 RlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM-~V~GLT~~hVKSHLQ 84 (370)
--.||.+=.+.|..|+.... +-||.+--++- -|+|=|..+|+.|-|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 34699999999999998875 45676554432 358999999999866
No 29
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=28.72 E-value=21 Score=29.55 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hhHHHHhcCCCc-c--HHHHHHhhhhhhc
Q 017491 41 VELHERFVDAVTQLGGPDKATP----KTIMRVMGVKGL-T--LYHLKSHLQKFRL 88 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtP----K~IL~lM~V~GL-T--~~hVKSHLQKYRl 88 (370)
-+||+.|.. |..+||.++.+- +.|.+.||++.- | ...+|.|-.||=+
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~ 105 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLY 105 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 479999986 779999987664 367888998652 2 5778888777733
No 30
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=28.36 E-value=21 Score=29.48 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hhHHHHhcCCCcc--HHHHHHhhhhh
Q 017491 41 VELHERFVDAVTQLGGPDKATP----KTIMRVMGVKGLT--LYHLKSHLQKF 86 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtP----K~IL~lM~V~GLT--~~hVKSHLQKY 86 (370)
-+||+.|.. |..+||.++.+- +.|.+.||++.-| -..+|.|-.||
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 478988885 779999986653 3688899998643 34566666665
No 31
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=27.58 E-value=16 Score=30.48 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hhHHHHhcCCCccHHHHHHhhhhhhc
Q 017491 41 VELHERFVDAVTQLGGPDKATP----KTIMRVMGVKGLTLYHLKSHLQKFRL 88 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtP----K~IL~lM~V~GLT~~hVKSHLQKYRl 88 (370)
-+|++.|.. |..+||.++.|- +.|.+.|+++. -..|+.|-.||=+
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 96 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence 478888875 789999988775 36788999987 6788888777754
No 32
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=27.48 E-value=22 Score=27.79 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hhHHHHhcCCCcc--HHHHHHhhhhh
Q 017491 41 VELHERFVDAVTQLGGPDKATP----KTIMRVMGVKGLT--LYHLKSHLQKF 86 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtP----K~IL~lM~V~GLT--~~hVKSHLQKY 86 (370)
-+||+.|.. |..+||.++.+- +.|.+.|+++.-+ ..+++.|-.||
T Consensus 36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 478888875 779999987664 3678889986532 34566666655
No 33
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.40 E-value=24 Score=29.10 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hhHHHHhcCCCcc--HHHHHHhhhhhhc
Q 017491 41 VELHERFVDAVTQLGGPDKATP----KTIMRVMGVKGLT--LYHLKSHLQKFRL 88 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtP----K~IL~lM~V~GLT--~~hVKSHLQKYRl 88 (370)
-+|++.|.. |..+||.++.+- +.|.+.||++.-+ ..+++.|-.||=+
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 478988885 789999877664 3688889996533 3567777666633
No 34
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=26.65 E-value=23 Score=29.01 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hhHHHHhcCCCcc--HHHHHHhhhhhh
Q 017491 41 VELHERFVDAVTQLGGPDKATP----KTIMRVMGVKGLT--LYHLKSHLQKFR 87 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtP----K~IL~lM~V~GLT--~~hVKSHLQKYR 87 (370)
-+||+.|.. |..+||.++.+- +.|.+.||++.-| ..+|+.|-.||=
T Consensus 40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L 91 (117)
T 2jrz_A 40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIV 91 (117)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTT
T ss_pred ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 478988885 779999987664 3788899996433 456777777763
No 35
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.60 E-value=99 Score=23.26 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 40 TVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 40 T~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
|+++.++-++++...|--+..|.+.|-+.+|| +...|..||-+-
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L 55 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 67888888999999993356899999999986 456777777665
No 36
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=21.95 E-value=1.6e+02 Score=23.01 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=35.9
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 36 RlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
+-.||+|=...++++|..+|. .=..|-+.| +|=|-.+|+.|-..+
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMI 97 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHH
Confidence 458999999999999999993 234666655 788999999886654
No 37
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.45 E-value=37 Score=28.84 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hhHHHHhcCCCc---cHHHHHHhhhhhh
Q 017491 41 VELHERFVDAVTQLGGPDKATP----KTIMRVMGVKGL---TLYHLKSHLQKFR 87 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtP----K~IL~lM~V~GL---T~~hVKSHLQKYR 87 (370)
-+|+..|.. |..+||.++.+- +.|.+.||++.- ..+.|+.|-.||=
T Consensus 64 vDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L 116 (145)
T 2kk0_A 64 LDLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYL 116 (145)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHH
Confidence 478888885 779999987664 368889999652 2467888777773
No 38
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=20.54 E-value=17 Score=29.06 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hhHHHHhcCCCc-c--HHHHHHhhhhhh
Q 017491 41 VELHERFVDAVTQLGGPDKATP----KTIMRVMGVKGL-T--LYHLKSHLQKFR 87 (370)
Q Consensus 41 ~ELH~rFV~AV~~LGG~dkAtP----K~IL~lM~V~GL-T--~~hVKSHLQKYR 87 (370)
-+|+..|.. |..+||.++.+- +.|.+.||++.- | -.++++|-.||=
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L 85 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLI 85 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 578988885 779999987764 367888998642 2 356888777773
No 39
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=20.35 E-value=2.2e+02 Score=19.62 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=35.2
Q ss_pred CccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 36 RlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
|-.||+|=.+..+++|+.+|. . .=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE-G--NWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc-C--CHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999992 1 23577777764467777777654443
No 40
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=20.26 E-value=1.5e+02 Score=22.84 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=35.7
Q ss_pred CCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhcCCCccHHHHHHhhhhh
Q 017491 35 PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86 (370)
Q Consensus 35 pRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY 86 (370)
.+-.||+|=.+.++++|.++|. + =..|-+. ++|=|-.+|+.|-..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~--~--W~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN--R--WAEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS--C--HHHHHTT--CTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCC--C--HHHHHHH--cCCCCHHHHHHHHHHH
Confidence 3558999999999999999993 2 2356554 5899999999886544
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=20.06 E-value=1.8e+02 Score=23.91 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=39.0
Q ss_pred CCCCCCccCCHHHHHHHHHHHHhhCCCCCCChhhHHHHhc--CCCccHHHHHHhhhh
Q 017491 31 TDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG--VKGLTLYHLKSHLQK 85 (370)
Q Consensus 31 ~~~KpRlrWT~ELH~rFV~AV~~LGG~dkAtPK~IL~lM~--V~GLT~~hVKSHLQK 85 (370)
..++.|-.||+|=-+..+++|+++|. . .=+.|++.+. .+|=|--+||.+-..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdrWrn 61 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDKWKT 61 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 45788999999999999999999993 1 2347777552 378898899865443
Done!