Query 017492
Match_columns 370
No_of_seqs 282 out of 2109
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 09:02:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0538 Glycolate oxidase [Ene 100.0 8.7E-92 1.9E-96 646.2 30.2 356 4-359 1-357 (363)
2 PLN02493 probable peroxisomal 100.0 4.1E-84 8.8E-89 628.2 36.1 359 3-361 2-360 (367)
3 PLN02535 glycolate oxidase 100.0 2.4E-81 5.2E-86 609.7 35.0 358 2-362 3-360 (364)
4 PRK11197 lldD L-lactate dehydr 100.0 6.1E-81 1.3E-85 609.4 36.0 353 3-356 2-376 (381)
5 TIGR02708 L_lactate_ox L-lacta 100.0 1.5E-80 3.2E-85 604.0 36.6 352 2-360 11-363 (367)
6 cd04736 MDH_FMN Mandelate dehy 100.0 1.8E-80 4E-85 602.2 35.0 342 8-352 1-361 (361)
7 cd03332 LMO_FMN L-Lactate 2-mo 100.0 3.4E-79 7.4E-84 598.2 36.0 351 4-355 18-383 (383)
8 cd04737 LOX_like_FMN L-Lactate 100.0 2.1E-78 4.5E-83 588.3 35.3 347 3-355 4-351 (351)
9 PF01070 FMN_dh: FMN-dependent 100.0 3.4E-77 7.4E-82 583.4 34.5 343 14-356 1-356 (356)
10 cd02922 FCB2_FMN Flavocytochro 100.0 4.8E-75 1E-79 565.0 36.5 339 8-353 1-344 (344)
11 PLN02979 glycolate oxidase 100.0 4.4E-70 9.5E-75 525.7 33.2 320 45-364 43-362 (366)
12 COG1304 idi Isopentenyl diphos 100.0 5.9E-65 1.3E-69 494.2 25.4 349 7-360 1-353 (360)
13 cd02809 alpha_hydroxyacid_oxid 100.0 3.5E-59 7.6E-64 448.9 35.1 299 8-352 1-299 (299)
14 cd02811 IDI-2_FMN Isopentenyl- 100.0 8E-40 1.7E-44 317.7 27.0 270 38-352 17-326 (326)
15 PRK05437 isopentenyl pyrophosp 100.0 9.2E-40 2E-44 319.9 26.3 279 40-359 27-340 (352)
16 TIGR02151 IPP_isom_2 isopenten 100.0 2.2E-38 4.8E-43 308.5 25.6 276 41-357 21-331 (333)
17 TIGR01306 GMP_reduct_2 guanosi 100.0 6.5E-30 1.4E-34 244.9 21.4 256 42-357 3-312 (321)
18 PRK05458 guanosine 5'-monophos 100.0 1.5E-29 3.2E-34 243.4 23.7 256 42-357 6-315 (326)
19 TIGR01305 GMP_reduct_1 guanosi 100.0 1.2E-27 2.6E-32 227.6 22.6 256 41-353 8-329 (343)
20 cd02808 GltS_FMN Glutamate syn 99.9 9E-26 2E-30 224.3 26.1 274 58-356 59-390 (392)
21 PRK08649 inosine 5-monophospha 99.9 7E-26 1.5E-30 222.2 24.0 289 41-357 16-367 (368)
22 TIGR01304 IMP_DH_rel_2 IMP deh 99.9 9.9E-26 2.1E-30 220.6 22.2 291 40-356 12-368 (369)
23 cd00381 IMPDH IMPDH: The catal 99.9 7.4E-25 1.6E-29 212.7 23.6 258 42-356 3-322 (325)
24 PF00478 IMPDH: IMP dehydrogen 99.9 1.1E-23 2.5E-28 203.8 23.4 256 42-354 4-336 (352)
25 PRK05096 guanosine 5'-monophos 99.9 2.9E-23 6.3E-28 197.6 21.8 256 41-353 9-330 (346)
26 PRK06843 inosine 5-monophospha 99.9 8.8E-23 1.9E-27 201.2 23.8 256 41-353 10-381 (404)
27 TIGR01037 pyrD_sub1_fam dihydr 99.9 1.5E-22 3.2E-27 195.0 23.5 238 61-353 1-298 (300)
28 cd04739 DHOD_like Dihydroorota 99.9 3.4E-21 7.4E-26 187.3 27.1 239 60-353 1-302 (325)
29 PRK07259 dihydroorotate dehydr 99.9 3.1E-21 6.8E-26 185.9 26.1 239 60-353 1-298 (301)
30 PRK07565 dihydroorotate dehydr 99.9 7.8E-21 1.7E-25 185.7 25.7 240 60-354 2-305 (334)
31 cd04740 DHOD_1B_like Dihydroor 99.9 1.1E-20 2.5E-25 181.5 26.2 236 62-352 1-294 (296)
32 PRK10415 tRNA-dihydrouridine s 99.9 6.5E-21 1.4E-25 185.0 21.7 250 65-356 3-285 (321)
33 PLN02495 oxidoreductase, actin 99.9 1.8E-20 3.9E-25 184.6 23.6 251 57-355 7-337 (385)
34 COG0042 tRNA-dihydrouridine sy 99.9 9.6E-21 2.1E-25 183.5 21.1 250 65-357 4-287 (323)
35 PTZ00314 inosine-5'-monophosph 99.9 6.7E-20 1.5E-24 187.0 25.6 145 208-352 264-466 (495)
36 PRK07107 inosine 5-monophospha 99.9 2.5E-20 5.4E-25 190.0 21.5 142 212-353 269-472 (502)
37 TIGR00737 nifR3_yhdG putative 99.9 3.5E-20 7.6E-25 180.0 20.7 246 66-353 2-280 (319)
38 cd02940 DHPD_FMN Dihydropyrimi 99.9 5.7E-20 1.2E-24 176.9 21.7 215 60-314 1-286 (299)
39 PRK10550 tRNA-dihydrouridine s 99.9 9.8E-20 2.1E-24 175.8 22.6 200 72-313 1-228 (312)
40 COG0167 PyrD Dihydroorotate de 99.8 2.1E-19 4.5E-24 171.5 23.2 176 134-355 107-308 (310)
41 TIGR00742 yjbN tRNA dihydrouri 99.8 1.1E-19 2.4E-24 175.8 21.6 238 73-356 2-280 (318)
42 TIGR01302 IMP_dehydrog inosine 99.8 1.3E-19 2.7E-24 183.6 21.6 143 209-351 248-449 (450)
43 PRK08318 dihydropyrimidine deh 99.8 2.9E-19 6.3E-24 179.8 23.6 248 59-355 2-320 (420)
44 PLN02826 dihydroorotate dehydr 99.8 1.7E-18 3.7E-23 172.1 28.4 123 224-354 261-407 (409)
45 PF01645 Glu_synthase: Conserv 99.8 9.9E-20 2.1E-24 177.6 18.6 255 68-345 62-368 (368)
46 PRK05567 inosine 5'-monophosph 99.8 1.6E-19 3.4E-24 184.6 19.7 141 213-353 256-455 (486)
47 PLN02274 inosine-5'-monophosph 99.8 2.8E-19 6.1E-24 182.6 21.0 143 209-353 272-473 (505)
48 TIGR01303 IMP_DH_rel_1 IMP deh 99.8 4.1E-19 9E-24 179.9 22.0 146 209-354 249-457 (475)
49 PRK02506 dihydroorotate dehydr 99.8 1.4E-18 3E-23 168.0 23.3 241 60-353 1-306 (310)
50 PRK05286 dihydroorotate dehydr 99.8 3E-18 6.6E-23 167.9 24.4 232 56-343 44-344 (344)
51 PF01207 Dus: Dihydrouridine s 99.8 9.2E-19 2E-23 169.2 13.8 241 75-357 1-274 (309)
52 PRK11815 tRNA-dihydrouridine s 99.8 1.4E-17 3E-22 162.5 20.6 243 69-355 8-289 (333)
53 cd04741 DHOD_1A_like Dihydroor 99.8 3.9E-17 8.5E-22 156.8 22.0 223 63-339 1-294 (294)
54 cd04738 DHOD_2_like Dihydrooro 99.8 5.2E-17 1.1E-21 158.2 22.3 236 32-314 9-314 (327)
55 PRK07807 inosine 5-monophospha 99.8 4.9E-17 1.1E-21 165.1 22.3 158 211-368 253-478 (479)
56 COG0069 GltB Glutamate synthas 99.8 3.4E-17 7.3E-22 163.2 20.0 262 68-354 163-477 (485)
57 cd02810 DHOD_DHPD_FMN Dihydroo 99.8 1.1E-16 2.3E-21 153.4 21.0 207 63-314 1-277 (289)
58 cd02801 DUS_like_FMN Dihydrour 99.7 9.7E-17 2.1E-21 148.4 18.2 200 73-314 1-218 (231)
59 cd02911 arch_FMN Archeal FMN-b 99.7 2.8E-16 6E-21 145.9 16.5 188 73-311 1-222 (233)
60 PRK11750 gltB glutamate syntha 99.7 4.4E-16 9.5E-21 171.1 20.4 256 72-350 859-1165(1485)
61 KOG2550 IMP dehydrogenase/GMP 99.7 1.8E-16 4E-21 152.4 13.2 147 207-353 273-476 (503)
62 TIGR01036 pyrD_sub2 dihydrooro 99.7 3.4E-15 7.4E-20 145.7 21.4 103 212-314 190-322 (335)
63 PF01180 DHO_dh: Dihydroorotat 99.7 1.6E-15 3.4E-20 145.9 18.2 119 213-339 150-295 (295)
64 KOG2335 tRNA-dihydrouridine sy 99.7 2.6E-15 5.6E-20 143.6 16.0 206 65-314 11-238 (358)
65 TIGR03151 enACPred_II putative 99.6 3E-14 6.5E-19 137.5 21.9 183 64-316 6-197 (307)
66 PF03060 NMO: Nitronate monoox 99.6 5.9E-14 1.3E-18 137.0 22.0 199 64-315 6-225 (330)
67 TIGR00736 nifR3_rel_arch TIM-b 99.6 3E-14 6.4E-19 131.6 15.7 152 123-314 68-225 (231)
68 KOG1436 Dihydroorotate dehydro 99.5 2.5E-13 5.4E-18 127.2 16.5 121 225-353 252-396 (398)
69 cd04730 NPD_like 2-Nitropropan 99.5 2.7E-12 5.9E-17 119.1 20.9 188 71-322 2-198 (236)
70 COG2070 Dioxygenases related t 99.4 3.9E-12 8.5E-17 124.0 16.5 101 214-318 117-222 (336)
71 cd04743 NPD_PKS 2-Nitropropane 99.4 3.6E-11 7.8E-16 115.8 19.2 182 71-316 2-209 (320)
72 cd04742 NPD_FabD 2-Nitropropan 99.4 1.2E-10 2.5E-15 115.9 21.5 221 64-315 8-254 (418)
73 PRK13523 NADPH dehydrogenase N 99.4 3.8E-11 8.2E-16 117.5 17.7 227 62-314 6-310 (337)
74 cd04722 TIM_phosphate_binding 99.3 1.4E-10 3E-15 103.0 17.8 185 74-310 1-200 (200)
75 PRK01130 N-acetylmannosamine-6 99.2 1.1E-09 2.4E-14 100.9 19.2 98 214-314 108-207 (221)
76 TIGR02814 pfaD_fam PfaD family 99.2 2.4E-09 5.2E-14 107.3 22.2 222 64-316 13-260 (444)
77 cd04734 OYE_like_3_FMN Old yel 99.2 2.1E-09 4.4E-14 105.6 19.9 103 210-314 191-320 (343)
78 cd02932 OYE_YqiM_FMN Old yello 99.2 1.7E-09 3.8E-14 105.9 19.1 104 209-314 203-325 (336)
79 cd04729 NanE N-acetylmannosami 99.1 3.9E-09 8.5E-14 97.2 18.6 99 213-314 111-211 (219)
80 cd02803 OYE_like_FMN_family Ol 99.1 7.7E-10 1.7E-14 107.8 14.2 102 211-314 192-316 (327)
81 cd04747 OYE_like_5_FMN Old yel 99.1 8.7E-09 1.9E-13 101.6 19.2 102 210-314 194-333 (361)
82 cd02933 OYE_like_FMN Old yello 99.0 3.9E-09 8.4E-14 103.4 15.0 101 210-314 202-319 (338)
83 KOG2333 Uncharacterized conser 99.0 1.1E-08 2.5E-13 100.9 17.7 234 72-345 265-529 (614)
84 PF04131 NanE: Putative N-acet 99.0 1.5E-08 3.3E-13 89.8 16.8 96 213-314 81-178 (192)
85 KOG1799 Dihydropyrimidine dehy 99.0 7.5E-10 1.6E-14 105.1 8.6 255 50-356 92-424 (471)
86 PRK08255 salicylyl-CoA 5-hydro 99.0 4E-08 8.6E-13 106.2 22.3 101 211-314 602-722 (765)
87 cd02930 DCR_FMN 2,4-dienoyl-Co 99.0 2.3E-08 5E-13 98.6 18.5 103 210-314 187-311 (353)
88 cd04735 OYE_like_4_FMN Old yel 99.0 3.7E-09 8E-14 104.3 12.6 105 210-314 194-318 (353)
89 cd04733 OYE_like_2_FMN Old yel 99.0 7.8E-09 1.7E-13 101.4 14.3 104 209-314 198-327 (338)
90 TIGR00262 trpA tryptophan synt 99.0 9.5E-08 2.1E-12 90.1 20.1 157 132-317 20-235 (256)
91 cd02931 ER_like_FMN Enoate red 98.9 1.6E-08 3.4E-13 100.8 14.7 104 209-314 200-340 (382)
92 PRK06552 keto-hydroxyglutarate 98.9 6.6E-08 1.4E-12 88.7 17.6 174 125-315 14-189 (213)
93 CHL00200 trpA tryptophan synth 98.9 1.7E-07 3.6E-12 88.7 20.5 157 132-317 25-239 (263)
94 cd00331 IGPS Indole-3-glycerol 98.9 4.6E-08 9.9E-13 89.9 15.1 49 266-314 158-206 (217)
95 PRK09140 2-dehydro-3-deoxy-6-p 98.9 1E-07 2.3E-12 87.0 16.8 172 127-314 13-184 (206)
96 PLN02591 tryptophan synthase 98.9 3.8E-07 8.3E-12 85.5 20.0 157 132-317 12-226 (250)
97 PRK10605 N-ethylmaleimide redu 98.8 1.2E-06 2.7E-11 86.6 23.0 99 211-314 210-326 (362)
98 PRK13111 trpA tryptophan synth 98.8 9.8E-07 2.1E-11 83.3 19.9 156 132-317 22-236 (258)
99 cd04732 HisA HisA. Phosphorib 98.8 2.7E-07 5.8E-12 85.5 15.3 102 212-315 60-225 (234)
100 cd04727 pdxS PdxS is a subunit 98.7 2E-07 4.4E-12 87.5 13.6 98 214-314 101-230 (283)
101 PRK00278 trpC indole-3-glycero 98.7 4.1E-07 9E-12 86.0 15.6 49 266-314 197-245 (260)
102 cd04724 Tryptophan_synthase_al 98.7 1.7E-06 3.6E-11 81.0 18.6 155 133-317 11-223 (242)
103 COG3010 NanE Putative N-acetyl 98.7 3.2E-06 7E-11 75.6 18.9 176 81-313 26-213 (229)
104 COG0159 TrpA Tryptophan syntha 98.7 3.6E-06 7.7E-11 78.9 20.2 157 132-318 27-242 (265)
105 cd00452 KDPG_aldolase KDPG and 98.7 6.2E-07 1.3E-11 80.8 14.5 169 126-313 6-175 (190)
106 TIGR01182 eda Entner-Doudoroff 98.7 9.4E-07 2E-11 80.3 15.5 171 126-314 10-181 (204)
107 COG1902 NemA NADH:flavin oxido 98.6 1.6E-06 3.4E-11 85.6 17.4 102 211-314 200-323 (363)
108 PRK13125 trpA tryptophan synth 98.6 9.7E-06 2.1E-10 76.0 21.6 99 216-316 121-221 (244)
109 TIGR00343 pyridoxal 5'-phospha 98.6 4.8E-07 1E-11 85.0 12.6 98 214-314 103-233 (287)
110 PRK07114 keto-hydroxyglutarate 98.6 1.2E-06 2.5E-11 80.7 15.0 172 126-313 17-192 (222)
111 cd02929 TMADH_HD_FMN Trimethyl 98.6 6.8E-07 1.5E-11 88.8 14.3 103 209-314 199-324 (370)
112 PRK00507 deoxyribose-phosphate 98.6 7.8E-07 1.7E-11 82.0 12.9 94 213-311 108-210 (221)
113 COG0274 DeoC Deoxyribose-phosp 98.6 9.4E-07 2E-11 80.4 12.1 98 209-310 107-213 (228)
114 TIGR00007 phosphoribosylformim 98.5 2.4E-06 5.3E-11 79.0 13.7 77 236-315 148-224 (230)
115 PRK07695 transcriptional regul 98.5 2.7E-06 5.9E-11 77.2 13.6 94 217-314 86-182 (201)
116 PRK13585 1-(5-phosphoribosyl)- 98.5 1.3E-06 2.9E-11 81.4 11.8 100 213-314 64-227 (241)
117 PRK04180 pyridoxal biosynthesi 98.5 1.4E-06 3.1E-11 82.2 11.7 98 214-314 110-239 (293)
118 PF00290 Trp_syntA: Tryptophan 98.5 8.8E-06 1.9E-10 76.7 17.1 159 132-320 20-237 (259)
119 cd04731 HisF The cyclase subun 98.5 1.8E-06 3.8E-11 80.8 12.2 77 236-315 152-229 (243)
120 PRK06015 keto-hydroxyglutarate 98.5 9.2E-06 2E-10 73.7 16.1 170 126-313 6-176 (201)
121 PRK14024 phosphoribosyl isomer 98.5 8E-07 1.7E-11 83.1 9.3 77 236-315 149-228 (241)
122 cd04728 ThiG Thiazole synthase 98.4 1.7E-06 3.8E-11 79.8 10.8 77 233-314 131-209 (248)
123 COG0107 HisF Imidazoleglycerol 98.4 3.7E-06 8E-11 76.5 12.7 118 212-344 61-251 (256)
124 PRK00748 1-(5-phosphoribosyl)- 98.4 1.9E-06 4.2E-11 79.8 11.4 77 236-315 149-226 (233)
125 PRK07455 keto-hydroxyglutarate 98.4 5.1E-06 1.1E-10 74.7 13.5 170 126-313 14-184 (187)
126 PRK00208 thiG thiazole synthas 98.4 2E-06 4.4E-11 79.4 11.0 77 233-314 131-209 (250)
127 PRK01033 imidazole glycerol ph 98.4 1.8E-06 4E-11 81.5 10.7 76 237-315 156-232 (258)
128 PRK13587 1-(5-phosphoribosyl)- 98.4 3E-06 6.6E-11 78.9 11.8 101 212-314 63-226 (234)
129 TIGR00126 deoC deoxyribose-pho 98.4 5.4E-06 1.2E-10 75.9 13.1 94 212-310 103-205 (211)
130 PF00724 Oxidored_FMN: NADH:fl 98.4 3.9E-06 8.4E-11 82.5 12.7 102 211-314 200-326 (341)
131 KOG0399 Glutamate synthase [Am 98.4 1.4E-06 3.1E-11 93.6 10.1 142 212-353 1080-1269(2142)
132 TIGR03572 WbuZ glycosyl amidat 98.4 5.4E-06 1.2E-10 76.9 12.2 75 236-313 156-231 (232)
133 COG0800 Eda 2-keto-3-deoxy-6-p 98.3 4.1E-06 8.8E-11 75.8 10.7 167 131-314 20-186 (211)
134 PF01081 Aldolase: KDPG and KH 98.3 3.3E-06 7.1E-11 76.3 9.9 170 127-314 11-181 (196)
135 cd00959 DeoC 2-deoxyribose-5-p 98.3 1.3E-05 2.9E-10 72.9 13.9 91 212-308 102-202 (203)
136 TIGR01163 rpe ribulose-phospha 98.3 3.6E-05 7.8E-10 69.9 16.5 76 237-313 117-197 (210)
137 PF00218 IGPS: Indole-3-glycer 98.3 1.2E-05 2.7E-10 75.4 13.0 80 233-315 165-244 (254)
138 PF00977 His_biosynth: Histidi 98.3 4.1E-06 8.8E-11 77.8 9.3 100 213-314 61-225 (229)
139 cd00945 Aldolase_Class_I Class 98.2 9.6E-05 2.1E-09 66.0 17.3 172 89-309 14-201 (201)
140 cd04723 HisA_HisF Phosphoribos 98.2 1.5E-05 3.2E-10 74.3 12.3 101 213-315 66-224 (233)
141 COG0106 HisA Phosphoribosylfor 98.2 1.4E-05 3.1E-10 73.7 11.7 101 213-315 63-227 (241)
142 PRK02083 imidazole glycerol ph 98.2 1E-05 2.2E-10 76.1 10.7 77 236-315 156-233 (253)
143 PRK13957 indole-3-glycerol-pho 98.2 6.7E-05 1.4E-09 70.1 15.9 47 268-315 190-236 (247)
144 PRK05718 keto-hydroxyglutarate 98.2 5.3E-05 1.1E-09 69.5 14.9 171 125-313 16-187 (212)
145 PF05690 ThiG: Thiazole biosyn 98.2 1.2E-05 2.6E-10 73.6 10.5 96 213-313 112-208 (247)
146 TIGR01304 IMP_DH_rel_2 IMP deh 98.2 9.5E-06 2.1E-10 80.2 10.3 96 209-310 117-217 (369)
147 PRK00043 thiE thiamine-phospha 98.2 3.9E-05 8.4E-10 69.8 13.6 80 233-314 111-193 (212)
148 TIGR03128 RuMP_HxlA 3-hexulose 98.2 7.2E-05 1.6E-09 68.0 15.2 95 216-314 94-191 (206)
149 TIGR00735 hisF imidazoleglycer 98.1 1.3E-05 2.9E-10 75.4 9.9 76 236-314 158-234 (254)
150 PRK08883 ribulose-phosphate 3- 98.1 0.00034 7.4E-09 64.5 18.0 137 132-313 8-199 (220)
151 PF04481 DUF561: Protein of un 98.1 0.00018 4E-09 65.0 15.5 71 238-313 137-218 (242)
152 PRK05848 nicotinate-nucleotide 98.1 4.2E-05 9E-10 72.7 12.1 89 214-313 169-261 (273)
153 cd04731 HisF The cyclase subun 98.1 3.1E-05 6.7E-10 72.3 11.1 76 236-314 30-105 (243)
154 PLN02411 12-oxophytodienoate r 98.1 0.00012 2.5E-09 73.3 15.8 101 211-314 216-347 (391)
155 PRK06806 fructose-bisphosphate 98.1 0.00093 2E-08 63.9 21.2 108 234-345 153-278 (281)
156 KOG2334 tRNA-dihydrouridine sy 98.1 5.1E-05 1.1E-09 74.5 12.3 202 70-315 9-248 (477)
157 COG0134 TrpC Indole-3-glycerol 98.1 6.4E-05 1.4E-09 70.2 12.5 87 225-315 156-242 (254)
158 cd04726 KGPDC_HPS 3-Keto-L-gul 98.1 0.00014 3E-09 65.8 14.5 93 216-313 95-190 (202)
159 PRK04128 1-(5-phosphoribosyl)- 98.1 3.8E-05 8.3E-10 71.2 11.0 102 213-315 61-217 (228)
160 PRK07028 bifunctional hexulose 98.0 0.00029 6.4E-09 71.4 18.2 94 216-314 99-195 (430)
161 PRK14114 1-(5-phosphoribosyl)- 98.0 3.4E-05 7.4E-10 72.1 10.5 100 213-315 62-229 (241)
162 PRK08649 inosine 5-monophospha 98.0 2.4E-05 5.1E-10 77.5 9.7 98 209-310 116-216 (368)
163 CHL00162 thiG thiamin biosynth 98.0 3.5E-05 7.5E-10 71.4 10.1 97 213-314 126-223 (267)
164 PRK07226 fructose-bisphosphate 98.0 0.00017 3.6E-09 68.6 15.0 88 216-314 130-236 (267)
165 TIGR00735 hisF imidazoleglycer 98.0 3.6E-05 7.9E-10 72.5 10.0 77 235-314 31-108 (254)
166 PRK02083 imidazole glycerol ph 98.0 3.5E-05 7.6E-10 72.5 9.9 76 236-314 33-108 (253)
167 cd00564 TMP_TenI Thiamine mono 98.0 0.00011 2.3E-09 65.5 12.2 78 234-314 103-183 (196)
168 PF01791 DeoC: DeoC/LacD famil 98.0 6.4E-05 1.4E-09 70.0 10.9 97 213-313 110-234 (236)
169 TIGR01919 hisA-trpF 1-(5-phosp 98.0 7.8E-05 1.7E-09 69.8 11.4 100 213-314 62-230 (243)
170 TIGR01859 fruc_bis_ald_ fructo 97.9 0.0017 3.6E-08 62.2 20.3 108 234-345 153-279 (282)
171 TIGR00875 fsa_talC_mipB fructo 97.9 0.003 6.4E-08 58.0 21.0 171 89-318 8-194 (213)
172 PRK13802 bifunctional indole-3 97.9 0.00022 4.8E-09 75.8 15.3 87 225-315 160-246 (695)
173 cd00958 DhnA Class I fructose- 97.9 0.00021 4.6E-09 66.3 13.4 82 222-314 119-219 (235)
174 cd00956 Transaldolase_FSA Tran 97.9 0.0023 5E-08 58.7 19.9 101 214-318 91-194 (211)
175 PLN02334 ribulose-phosphate 3- 97.9 0.00084 1.8E-08 62.2 17.1 116 215-339 106-226 (229)
176 cd00429 RPE Ribulose-5-phospha 97.9 0.0006 1.3E-08 61.7 15.9 76 237-314 119-199 (211)
177 PRK09427 bifunctional indole-3 97.9 8.3E-05 1.8E-09 75.5 10.3 129 213-351 98-271 (454)
178 cd01573 modD_like ModD; Quinol 97.9 0.0011 2.4E-08 63.1 17.2 88 214-312 171-261 (272)
179 PRK04180 pyridoxal biosynthesi 97.8 0.0002 4.4E-09 67.8 11.6 121 139-309 27-148 (293)
180 PRK00748 1-(5-phosphoribosyl)- 97.8 0.00022 4.7E-09 66.1 11.4 75 237-314 34-108 (233)
181 cd04732 HisA HisA. Phosphorib 97.8 0.00012 2.6E-09 67.8 9.6 76 236-314 32-107 (234)
182 PLN02446 (5-phosphoribosyl)-5- 97.8 0.00049 1.1E-08 64.8 13.7 46 266-313 195-242 (262)
183 PRK05283 deoxyribose-phosphate 97.8 0.00034 7.4E-09 65.7 12.0 96 212-313 116-226 (257)
184 PRK04302 triosephosphate isome 97.8 0.0015 3.3E-08 60.3 16.2 95 217-314 107-207 (223)
185 PRK06801 hypothetical protein; 97.8 0.0052 1.1E-07 58.9 20.2 107 234-345 156-283 (286)
186 PRK07428 nicotinate-nucleotide 97.8 0.00036 7.7E-09 66.8 12.1 89 214-313 183-275 (288)
187 PRK05742 nicotinate-nucleotide 97.7 0.00034 7.4E-09 66.7 11.8 86 216-313 179-265 (277)
188 TIGR00693 thiE thiamine-phosph 97.7 0.00055 1.2E-08 61.6 12.7 81 232-314 102-185 (196)
189 PRK07315 fructose-bisphosphate 97.7 0.0082 1.8E-07 57.8 21.4 79 234-314 154-237 (293)
190 PLN02460 indole-3-glycerol-pho 97.7 0.0011 2.5E-08 64.4 15.5 168 140-315 143-323 (338)
191 PRK06512 thiamine-phosphate py 97.7 0.00071 1.5E-08 62.5 13.3 95 217-314 100-197 (221)
192 PTZ00170 D-ribulose-5-phosphat 97.7 0.0034 7.3E-08 58.3 17.8 154 132-337 15-223 (228)
193 PRK01362 putative translaldola 97.7 0.012 2.7E-07 54.0 21.0 100 215-318 92-194 (214)
194 TIGR00078 nadC nicotinate-nucl 97.7 0.00054 1.2E-08 65.0 12.4 86 216-312 167-253 (265)
195 PRK02615 thiamine-phosphate py 97.7 0.00079 1.7E-08 66.1 13.9 95 217-314 230-327 (347)
196 TIGR00734 hisAF_rel hisA/hisF 97.7 0.00017 3.7E-09 66.6 8.7 70 240-315 148-219 (221)
197 COG0036 Rpe Pentose-5-phosphat 97.7 0.0024 5.2E-08 58.4 15.6 153 132-335 12-217 (220)
198 PRK14024 phosphoribosyl isomer 97.7 0.00036 7.9E-09 65.2 10.7 74 237-314 36-109 (241)
199 PRK08745 ribulose-phosphate 3- 97.6 0.0047 1E-07 57.1 17.3 137 132-313 12-203 (223)
200 PRK11840 bifunctional sulfur c 97.6 0.00035 7.5E-09 67.4 10.2 86 225-314 197-283 (326)
201 PRK12656 fructose-6-phosphate 97.6 0.017 3.6E-07 53.3 20.8 99 215-317 96-197 (222)
202 KOG1606 Stationary phase-induc 97.6 0.0012 2.6E-08 59.5 12.7 135 213-349 66-288 (296)
203 cd01572 QPRTase Quinolinate ph 97.6 0.00054 1.2E-08 65.1 11.3 87 216-313 171-258 (268)
204 PRK13586 1-(5-phosphoribosyl)- 97.6 0.00071 1.5E-08 62.9 11.7 99 213-314 61-223 (232)
205 PRK12653 fructose-6-phosphate 97.6 0.021 4.5E-07 52.7 21.0 171 89-318 8-196 (220)
206 PRK12655 fructose-6-phosphate 97.6 0.022 4.7E-07 52.5 20.9 113 215-331 94-211 (220)
207 cd01568 QPRTase_NadC Quinolina 97.6 0.00089 1.9E-08 63.7 12.2 87 215-312 169-258 (269)
208 COG2022 ThiG Uncharacterized e 97.6 0.00057 1.2E-08 62.4 10.0 94 216-314 122-216 (262)
209 COG0352 ThiE Thiamine monophos 97.6 0.0015 3.3E-08 59.7 12.7 95 217-314 94-191 (211)
210 PF04131 NanE: Putative N-acet 97.5 0.0027 5.9E-08 56.7 13.6 89 213-309 20-119 (192)
211 cd00405 PRAI Phosphoribosylant 97.5 0.0089 1.9E-07 54.2 17.2 96 214-314 85-186 (203)
212 COG0269 SgbH 3-hexulose-6-phos 97.5 0.0031 6.7E-08 57.4 13.5 199 125-336 4-213 (217)
213 PRK08072 nicotinate-nucleotide 97.5 0.0014 3E-08 62.6 11.8 88 215-313 176-264 (277)
214 TIGR01949 AroFGH_arch predicte 97.5 0.0014 3.1E-08 61.9 11.7 87 217-314 128-232 (258)
215 COG0214 SNZ1 Pyridoxine biosyn 97.4 0.0012 2.5E-08 60.4 10.3 100 213-314 65-242 (296)
216 PRK08385 nicotinate-nucleotide 97.4 0.0016 3.4E-08 62.1 11.5 87 215-313 171-263 (278)
217 PRK09722 allulose-6-phosphate 97.4 0.02 4.4E-07 53.1 18.2 120 212-336 46-220 (229)
218 PRK13585 1-(5-phosphoribosyl)- 97.4 0.00091 2E-08 62.3 9.5 75 236-313 35-109 (241)
219 PF02581 TMP-TENI: Thiamine mo 97.4 0.0019 4E-08 57.6 11.0 76 233-311 102-179 (180)
220 COG0107 HisF Imidazoleglycerol 97.4 0.0011 2.4E-08 60.6 9.4 76 236-314 33-108 (256)
221 TIGR03572 WbuZ glycosyl amidat 97.4 0.0012 2.6E-08 61.2 10.0 75 237-314 34-108 (232)
222 PRK13307 bifunctional formalde 97.4 0.017 3.7E-07 57.7 18.5 93 216-313 268-362 (391)
223 PRK08005 epimerase; Validated 97.4 0.012 2.7E-07 53.8 16.1 136 132-313 9-195 (210)
224 TIGR00007 phosphoribosylformim 97.3 0.0025 5.5E-08 58.9 11.7 75 237-314 32-106 (230)
225 TIGR02129 hisA_euk phosphoribo 97.3 0.0027 5.9E-08 59.6 11.8 100 213-314 64-237 (253)
226 PLN02617 imidazole glycerol ph 97.3 0.0012 2.6E-08 68.5 10.4 47 267-315 471-518 (538)
227 PRK04128 1-(5-phosphoribosyl)- 97.3 0.0011 2.4E-08 61.5 8.8 75 235-313 31-106 (228)
228 PRK13587 1-(5-phosphoribosyl)- 97.3 0.0014 3.1E-08 61.0 9.4 76 235-313 32-109 (234)
229 TIGR02129 hisA_euk phosphoribo 97.3 0.001 2.2E-08 62.4 8.3 69 236-314 41-109 (253)
230 PRK08185 hypothetical protein; 97.3 0.094 2E-06 50.2 21.7 110 234-345 149-277 (283)
231 PRK04169 geranylgeranylglycery 97.3 0.0018 3.8E-08 60.2 9.6 66 244-314 152-218 (232)
232 PF00834 Ribul_P_3_epim: Ribul 97.2 0.0077 1.7E-07 54.8 13.3 101 212-313 44-198 (201)
233 PRK12376 putative translaldola 97.2 0.098 2.1E-06 48.8 20.8 177 89-317 13-207 (236)
234 TIGR01182 eda Entner-Doudoroff 97.2 0.0025 5.4E-08 58.1 10.0 80 213-307 46-126 (204)
235 PRK05581 ribulose-phosphate 3- 97.2 0.01 2.2E-07 54.2 14.2 97 216-314 101-203 (220)
236 PF01729 QRPTase_C: Quinolinat 97.2 0.0044 9.6E-08 54.8 11.2 88 215-313 68-159 (169)
237 PRK06106 nicotinate-nucleotide 97.2 0.0044 9.4E-08 59.2 11.8 87 215-313 182-270 (281)
238 PRK08227 autoinducer 2 aldolas 97.2 0.0068 1.5E-07 57.3 13.0 84 216-313 131-230 (264)
239 PRK07998 gatY putative fructos 97.2 0.053 1.2E-06 51.9 19.1 107 234-345 153-278 (283)
240 PRK01033 imidazole glycerol ph 97.2 0.0039 8.5E-08 58.9 11.4 75 237-314 34-108 (258)
241 PRK06096 molybdenum transport 97.2 0.017 3.8E-07 55.2 15.8 85 215-311 178-266 (284)
242 TIGR01334 modD putative molybd 97.2 0.017 3.6E-07 55.1 15.5 86 215-312 177-266 (277)
243 PRK06559 nicotinate-nucleotide 97.2 0.0044 9.5E-08 59.3 11.5 87 215-313 185-273 (290)
244 cd04727 pdxS PdxS is a subunit 97.2 0.021 4.5E-07 54.1 15.8 86 213-309 53-139 (283)
245 PRK13397 3-deoxy-7-phosphohept 97.2 0.063 1.4E-06 50.4 18.9 201 62-312 5-222 (250)
246 PF00977 His_biosynth: Histidi 97.1 0.0027 5.9E-08 58.9 9.2 75 237-314 33-107 (229)
247 cd04723 HisA_HisF Phosphoribos 97.1 0.0026 5.7E-08 59.2 9.0 74 236-313 38-111 (233)
248 PRK07896 nicotinate-nucleotide 97.1 0.0058 1.3E-07 58.5 11.3 87 215-313 188-278 (289)
249 PRK09016 quinolinate phosphori 97.1 0.0048 1E-07 59.2 10.8 86 215-312 197-283 (296)
250 PF09370 TIM-br_sig_trns: TIM- 97.1 0.028 6E-07 52.8 15.5 195 72-312 15-249 (268)
251 TIGR00343 pyridoxal 5'-phospha 97.1 0.012 2.7E-07 55.7 13.2 86 213-309 55-141 (287)
252 PRK06543 nicotinate-nucleotide 97.0 0.0068 1.5E-07 57.8 11.3 88 214-313 180-269 (281)
253 PRK13586 1-(5-phosphoribosyl)- 97.0 0.0074 1.6E-07 56.2 11.0 74 237-314 34-107 (232)
254 cd02812 PcrB_like PcrB_like pr 97.0 0.0039 8.4E-08 57.4 8.9 69 239-314 141-209 (219)
255 PRK06978 nicotinate-nucleotide 97.0 0.008 1.7E-07 57.6 11.3 86 216-313 195-281 (294)
256 PRK03512 thiamine-phosphate py 97.0 0.017 3.8E-07 52.9 12.9 80 233-314 109-191 (211)
257 TIGR01769 GGGP geranylgeranylg 97.0 0.0046 1E-07 56.4 8.9 66 239-309 140-205 (205)
258 PLN02898 HMP-P kinase/thiamin- 96.9 0.012 2.7E-07 60.8 13.2 95 217-314 380-480 (502)
259 cd00947 TBP_aldolase_IIB Tagat 96.9 0.19 4.1E-06 48.0 19.8 109 234-344 148-274 (276)
260 TIGR01768 GGGP-family geranylg 96.9 0.0063 1.4E-07 56.1 9.4 66 245-314 148-213 (223)
261 PRK12595 bifunctional 3-deoxy- 96.9 0.15 3.2E-06 50.6 19.6 204 60-312 104-325 (360)
262 PRK07709 fructose-bisphosphate 96.9 0.32 6.9E-06 46.7 21.2 107 234-345 156-282 (285)
263 PRK12738 kbaY tagatose-bisphos 96.9 0.31 6.7E-06 46.8 21.0 109 234-345 155-281 (286)
264 PF01884 PcrB: PcrB family; I 96.8 0.008 1.7E-07 55.6 9.5 66 244-314 151-216 (230)
265 TIGR02134 transald_staph trans 96.8 0.44 9.4E-06 44.4 22.1 177 89-317 13-207 (236)
266 TIGR00167 cbbA ketose-bisphosp 96.8 0.24 5.3E-06 47.6 19.8 108 234-345 158-285 (288)
267 PRK09195 gatY tagatose-bisphos 96.8 0.32 6.8E-06 46.7 20.5 109 234-345 155-281 (284)
268 PRK12290 thiE thiamine-phospha 96.8 0.023 4.9E-07 57.3 13.1 96 218-314 291-397 (437)
269 PLN02446 (5-phosphoribosyl)-5- 96.8 0.013 2.9E-07 55.2 10.7 71 236-314 46-116 (262)
270 PRK14114 1-(5-phosphoribosyl)- 96.8 0.0083 1.8E-07 56.2 9.3 75 235-313 31-106 (241)
271 PRK06552 keto-hydroxyglutarate 96.8 0.011 2.4E-07 54.2 10.0 81 213-308 51-135 (213)
272 PRK11750 gltB glutamate syntha 96.7 0.014 3.1E-07 66.2 12.2 121 237-357 601-735 (1485)
273 cd00452 KDPG_aldolase KDPG and 96.7 0.016 3.4E-07 52.1 10.4 81 213-308 42-123 (190)
274 PF03932 CutC: CutC family; I 96.7 0.034 7.4E-07 50.5 12.5 125 130-307 66-197 (201)
275 PRK06852 aldolase; Validated 96.7 0.035 7.6E-07 53.6 13.2 92 217-313 159-269 (304)
276 PRK05835 fructose-bisphosphate 96.7 0.54 1.2E-05 45.5 21.1 109 234-345 155-304 (307)
277 TIGR01858 tag_bisphos_ald clas 96.7 0.42 9.1E-06 45.8 20.2 109 234-345 153-279 (282)
278 TIGR01919 hisA-trpF 1-(5-phosp 96.6 0.012 2.5E-07 55.2 9.2 72 238-313 36-107 (243)
279 COG3010 NanE Putative N-acetyl 96.6 0.079 1.7E-06 47.9 13.8 88 213-308 54-153 (229)
280 PRK08999 hypothetical protein; 96.6 0.009 2E-07 57.8 8.7 77 233-312 233-311 (312)
281 PRK13813 orotidine 5'-phosphat 96.6 0.0082 1.8E-07 54.9 7.9 118 212-336 42-213 (215)
282 PRK08091 ribulose-phosphate 3- 96.6 0.099 2.1E-06 48.5 15.0 96 215-313 107-211 (228)
283 PRK14057 epimerase; Provisiona 96.6 0.12 2.5E-06 48.7 15.5 78 234-313 143-225 (254)
284 PF01081 Aldolase: KDPG and KH 96.6 0.019 4.1E-07 52.0 9.9 82 212-308 45-127 (196)
285 PLN02591 tryptophan synthase 96.6 0.041 8.8E-07 51.8 12.4 41 214-254 178-219 (250)
286 PRK12857 fructose-1,6-bisphosp 96.6 0.52 1.1E-05 45.2 20.1 107 234-345 155-281 (284)
287 cd04728 ThiG Thiazole synthase 96.5 0.022 4.8E-07 52.9 10.3 106 124-253 91-204 (248)
288 TIGR00259 thylakoid_BtpA membr 96.5 0.014 3.1E-07 54.9 9.1 70 237-313 161-231 (257)
289 PRK06015 keto-hydroxyglutarate 96.5 0.021 4.5E-07 51.9 9.7 80 213-307 42-122 (201)
290 PF03437 BtpA: BtpA family; I 96.5 0.087 1.9E-06 49.6 14.1 70 237-314 162-232 (254)
291 cd00381 IMPDH IMPDH: The catal 96.5 0.03 6.4E-07 54.8 11.5 67 237-309 97-163 (325)
292 PLN02716 nicotinate-nucleotide 96.5 0.034 7.4E-07 53.6 11.4 93 216-313 189-294 (308)
293 PRK09250 fructose-bisphosphate 96.4 0.038 8.3E-07 54.0 11.7 95 220-314 187-323 (348)
294 PRK01130 N-acetylmannosamine-6 96.4 0.14 3E-06 47.1 15.0 91 214-309 45-146 (221)
295 cd04729 NanE N-acetylmannosami 96.4 0.15 3.3E-06 46.7 15.1 91 214-309 49-150 (219)
296 PRK12737 gatY tagatose-bisphos 96.4 0.87 1.9E-05 43.7 20.6 107 234-345 155-281 (284)
297 PRK08610 fructose-bisphosphate 96.4 0.89 1.9E-05 43.6 20.6 107 234-345 156-282 (286)
298 KOG2335 tRNA-dihydrouridine sy 96.3 0.062 1.3E-06 52.4 12.2 90 122-253 141-233 (358)
299 PF01116 F_bP_aldolase: Fructo 96.3 0.47 1E-05 45.6 18.0 110 234-345 155-284 (287)
300 CHL00200 trpA tryptophan synth 96.2 0.088 1.9E-06 49.9 12.8 41 214-254 191-232 (263)
301 cd02931 ER_like_FMN Enoate red 96.2 0.2 4.3E-06 50.1 16.0 215 63-310 5-273 (382)
302 PRK00208 thiG thiazole synthas 96.2 0.054 1.2E-06 50.5 10.8 106 124-253 91-204 (250)
303 KOG4201 Anthranilate synthase 96.2 0.044 9.6E-07 49.7 9.9 98 213-315 174-272 (289)
304 TIGR00736 nifR3_rel_arch TIM-b 96.2 0.043 9.4E-07 51.0 10.2 42 212-253 177-220 (231)
305 PLN02617 imidazole glycerol ph 96.2 0.027 5.8E-07 58.7 9.5 76 237-314 271-359 (538)
306 COG0157 NadC Nicotinate-nucleo 96.1 0.061 1.3E-06 50.9 10.8 89 213-312 173-265 (280)
307 PRK06843 inosine 5-monophospha 96.1 0.025 5.4E-07 56.7 8.6 67 237-309 156-222 (404)
308 PF04898 Glu_syn_central: Glut 96.1 0.052 1.1E-06 51.9 10.4 121 237-357 146-281 (287)
309 PRK05718 keto-hydroxyglutarate 96.0 0.063 1.4E-06 49.2 10.3 81 213-308 53-134 (212)
310 PRK09140 2-dehydro-3-deoxy-6-p 96.0 0.061 1.3E-06 49.1 10.1 81 213-308 48-130 (206)
311 PRK11572 copper homeostasis pr 96.0 0.12 2.7E-06 48.3 12.2 126 130-309 67-198 (248)
312 PRK03170 dihydrodipicolinate s 95.9 1.2 2.5E-05 42.8 19.2 182 72-313 6-209 (292)
313 COG2876 AroA 3-deoxy-D-arabino 95.9 0.72 1.6E-05 43.4 16.7 94 213-309 141-249 (286)
314 PRK12858 tagatose 1,6-diphosph 95.9 0.082 1.8E-06 52.0 11.1 73 239-314 190-281 (340)
315 TIGR02313 HpaI-NOT-DapA 2,4-di 95.9 1.4 3.1E-05 42.4 19.5 181 72-312 5-209 (294)
316 PRK07114 keto-hydroxyglutarate 95.8 0.057 1.2E-06 49.9 9.2 81 213-308 53-138 (222)
317 PF01207 Dus: Dihydrouridine s 95.8 0.051 1.1E-06 52.8 9.2 89 121-253 121-213 (309)
318 COG0106 HisA Phosphoribosylfor 95.7 0.077 1.7E-06 49.3 9.5 74 236-312 34-107 (241)
319 PRK09517 multifunctional thiam 95.7 0.2 4.2E-06 54.6 14.2 80 233-313 108-198 (755)
320 COG0135 TrpF Phosphoribosylant 95.6 0.25 5.5E-06 45.1 12.5 95 209-312 82-186 (208)
321 PTZ00314 inosine-5'-monophosph 95.6 0.055 1.2E-06 56.0 9.1 252 42-309 19-310 (495)
322 PRK08673 3-deoxy-7-phosphohept 95.6 0.61 1.3E-05 45.8 15.8 127 213-343 189-333 (335)
323 TIGR01302 IMP_dehydrog inosine 95.6 0.05 1.1E-06 55.6 8.7 252 42-309 3-293 (450)
324 COG1830 FbaB DhnA-type fructos 95.6 0.16 3.5E-06 47.8 11.2 87 217-314 135-242 (265)
325 TIGR00674 dapA dihydrodipicoli 95.6 2.1 4.6E-05 40.8 19.3 182 72-313 3-206 (285)
326 COG0159 TrpA Tryptophan syntha 95.6 0.065 1.4E-06 50.6 8.5 167 66-253 50-233 (265)
327 PLN02274 inosine-5'-monophosph 95.5 0.06 1.3E-06 55.8 9.1 253 41-309 22-317 (505)
328 TIGR01521 FruBisAldo_II_B fruc 95.5 1.7 3.8E-05 42.7 18.6 112 234-346 171-325 (347)
329 cd00408 DHDPS-like Dihydrodipi 95.5 2.3 5E-05 40.3 21.8 180 73-312 3-204 (281)
330 PF00478 IMPDH: IMP dehydrogen 95.5 0.12 2.5E-06 51.0 10.4 68 236-309 110-177 (352)
331 cd00331 IGPS Indole-3-glycerol 95.5 0.057 1.2E-06 49.4 7.9 71 236-312 34-104 (217)
332 cd03319 L-Ala-DL-Glu_epimerase 95.4 0.75 1.6E-05 44.5 15.9 127 125-311 126-260 (316)
333 TIGR03249 KdgD 5-dehydro-4-deo 95.4 2.7 5.9E-05 40.4 21.1 183 72-312 10-212 (296)
334 cd00950 DHDPS Dihydrodipicolin 95.4 2.4 5.2E-05 40.3 18.9 182 72-313 5-208 (284)
335 PRK13111 trpA tryptophan synth 95.3 0.36 7.7E-06 45.7 12.8 41 213-254 188-229 (258)
336 cd00439 Transaldolase Transald 95.3 2.1 4.5E-05 40.4 17.7 97 216-316 131-241 (252)
337 COG3142 CutC Uncharacterized p 95.2 0.39 8.4E-06 44.2 12.0 122 130-304 67-195 (241)
338 PF05690 ThiG: Thiazole biosyn 95.2 0.11 2.5E-06 47.9 8.6 40 213-252 163-203 (247)
339 TIGR00734 hisAF_rel hisA/hisF 95.2 0.1 2.2E-06 48.2 8.5 72 236-313 39-112 (221)
340 cd02810 DHOD_DHPD_FMN Dihydroo 95.1 0.32 6.9E-06 46.4 12.1 155 71-253 98-272 (289)
341 TIGR03569 NeuB_NnaB N-acetylne 95.1 3.7 8E-05 40.3 19.5 230 73-345 1-261 (329)
342 PRK13957 indole-3-glycerol-pho 95.1 0.14 3E-06 48.1 9.0 71 237-313 65-135 (247)
343 KOG4175 Tryptophan synthase al 95.1 0.54 1.2E-05 42.5 12.2 101 213-315 82-241 (268)
344 PLN02417 dihydrodipicolinate s 95.0 0.16 3.4E-06 48.6 9.6 91 240-333 29-124 (280)
345 cd04739 DHOD_like Dihydroorota 95.0 0.53 1.1E-05 46.0 13.5 187 71-300 99-304 (325)
346 PRK07565 dihydroorotate dehydr 95.0 0.33 7.1E-06 47.6 12.0 94 215-310 91-198 (334)
347 PRK09196 fructose-1,6-bisphosp 95.0 4.1 8.9E-05 40.2 19.8 112 234-346 173-327 (347)
348 cd04726 KGPDC_HPS 3-Keto-L-gul 95.0 0.93 2E-05 40.6 14.1 88 213-309 40-133 (202)
349 PRK10550 tRNA-dihydrouridine s 95.0 0.36 7.9E-06 46.9 12.1 87 124-253 135-224 (312)
350 TIGR02320 PEP_mutase phosphoen 94.9 3.1 6.8E-05 39.9 18.1 153 123-315 79-246 (285)
351 PRK05286 dihydroorotate dehydr 94.9 0.25 5.3E-06 48.7 10.8 104 123-253 212-318 (344)
352 TIGR00262 trpA tryptophan synt 94.9 0.41 8.9E-06 45.2 11.9 42 213-254 186-228 (256)
353 COG0042 tRNA-dihydrouridine sy 94.9 0.24 5.3E-06 48.4 10.6 42 212-253 184-228 (323)
354 TIGR02313 HpaI-NOT-DapA 2,4-di 94.9 0.18 3.9E-06 48.5 9.6 93 239-334 27-124 (294)
355 PRK07107 inosine 5-monophospha 94.8 0.12 2.6E-06 53.5 8.8 68 237-309 245-312 (502)
356 COG2022 ThiG Uncharacterized e 94.8 0.37 7.9E-06 44.5 10.7 40 213-252 170-210 (262)
357 cd00951 KDGDH 5-dehydro-4-deox 94.8 4 8.7E-05 39.1 20.3 182 73-313 6-208 (289)
358 PRK13399 fructose-1,6-bisphosp 94.7 4.6 0.0001 39.8 19.0 112 234-346 173-327 (347)
359 PF00290 Trp_syntA: Tryptophan 94.7 0.2 4.3E-06 47.4 9.2 40 214-254 187-227 (259)
360 COG0329 DapA Dihydrodipicolina 94.7 4.3 9.3E-05 39.2 21.2 181 72-311 9-211 (299)
361 TIGR01305 GMP_reduct_1 guanosi 94.7 0.32 6.9E-06 47.5 10.7 68 236-309 109-178 (343)
362 PRK03620 5-dehydro-4-deoxygluc 94.7 0.19 4.2E-06 48.5 9.4 92 239-334 34-130 (303)
363 PF00724 Oxidored_FMN: NADH:fl 94.7 0.42 9.1E-06 47.0 11.9 88 62-154 5-98 (341)
364 PRK07807 inosine 5-monophospha 94.6 0.15 3.4E-06 52.4 8.9 249 41-309 13-296 (479)
365 cd00951 KDGDH 5-dehydro-4-deox 94.6 0.21 4.6E-06 47.9 9.3 90 240-333 28-122 (289)
366 TIGR01306 GMP_reduct_2 guanosi 94.6 0.43 9.3E-06 46.5 11.4 78 226-309 83-165 (321)
367 PRK11840 bifunctional sulfur c 94.6 0.3 6.6E-06 47.4 10.2 107 123-253 164-278 (326)
368 cd00408 DHDPS-like Dihydrodipi 94.6 0.27 5.9E-06 46.7 9.9 92 239-333 24-120 (281)
369 PRK10415 tRNA-dihydrouridine s 94.5 0.36 7.9E-06 47.1 10.9 42 212-253 181-224 (321)
370 COG0800 Eda 2-keto-3-deoxy-6-p 94.5 0.16 3.6E-06 46.2 7.6 80 212-306 50-130 (211)
371 CHL00162 thiG thiamin biosynth 94.4 0.19 4.1E-06 47.0 8.2 40 213-252 177-217 (267)
372 cd00952 CHBPH_aldolase Trans-o 94.4 0.26 5.7E-06 47.8 9.5 91 240-333 36-131 (309)
373 PRK03620 5-dehydro-4-deoxygluc 94.4 5.2 0.00011 38.6 21.0 183 72-313 12-215 (303)
374 PRK07084 fructose-bisphosphate 94.4 5.5 0.00012 38.8 20.2 81 234-315 164-274 (321)
375 COG1902 NemA NADH:flavin oxido 94.3 1.2 2.5E-05 44.4 14.0 214 62-311 9-260 (363)
376 TIGR01303 IMP_DH_rel_1 IMP deh 94.3 0.22 4.7E-06 51.3 9.1 246 41-309 12-294 (475)
377 cd00516 PRTase_typeII Phosphor 94.3 0.47 1E-05 45.2 10.8 91 215-313 170-271 (281)
378 PRK13396 3-deoxy-7-phosphohept 94.2 1.4 3.1E-05 43.5 14.2 129 213-344 197-343 (352)
379 TIGR00737 nifR3_yhdG putative 94.2 0.53 1.1E-05 45.8 11.3 42 212-253 179-222 (319)
380 cd04740 DHOD_1B_like Dihydroor 94.1 0.56 1.2E-05 44.9 11.1 153 71-253 89-260 (296)
381 TIGR00742 yjbN tRNA dihydrouri 94.0 0.66 1.4E-05 45.3 11.4 94 123-253 124-223 (318)
382 TIGR03569 NeuB_NnaB N-acetylne 94.0 1.4 3E-05 43.3 13.6 139 132-300 12-153 (329)
383 TIGR01037 pyrD_sub1_fam dihydr 93.9 0.3 6.4E-06 47.0 8.9 41 213-253 222-263 (300)
384 COG0176 MipB Transaldolase [Ca 93.9 5.4 0.00012 37.2 18.8 101 216-320 107-211 (239)
385 COG0352 ThiE Thiamine monophos 93.9 2.6 5.7E-05 38.6 14.4 43 211-253 144-186 (211)
386 COG0329 DapA Dihydrodipicolina 93.9 0.44 9.5E-06 46.0 9.9 89 240-331 32-125 (299)
387 PRK00230 orotidine 5'-phosphat 93.8 0.13 2.9E-06 47.6 6.0 79 237-336 139-228 (230)
388 cd02929 TMADH_HD_FMN Trimethyl 93.8 4 8.6E-05 40.6 16.8 216 62-310 11-259 (370)
389 PF04309 G3P_antiterm: Glycero 93.8 0.071 1.5E-06 47.3 3.8 142 125-314 22-174 (175)
390 cd02801 DUS_like_FMN Dihydrour 93.8 0.96 2.1E-05 41.4 11.6 42 212-253 170-213 (231)
391 PRK05096 guanosine 5'-monophos 93.7 0.63 1.4E-05 45.5 10.5 67 237-309 111-179 (346)
392 TIGR03151 enACPred_II putative 93.7 1.1 2.4E-05 43.4 12.4 42 213-254 149-191 (307)
393 PRK07259 dihydroorotate dehydr 93.7 0.57 1.2E-05 45.1 10.3 43 211-253 220-263 (301)
394 PRK05567 inosine 5'-monophosph 93.6 0.32 7E-06 50.2 9.0 251 41-309 9-297 (486)
395 TIGR03249 KdgD 5-dehydro-4-deo 93.6 0.46 1E-05 45.7 9.5 92 239-334 32-128 (296)
396 PRK12309 transaldolase/EF-hand 93.6 6.2 0.00013 39.6 17.7 100 213-317 140-257 (391)
397 PLN02858 fructose-bisphosphate 93.5 11 0.00023 44.2 21.7 110 235-345 1251-1375(1378)
398 PRK13306 ulaD 3-keto-L-gulonat 93.5 0.27 5.8E-06 45.2 7.4 97 234-337 117-213 (216)
399 PRK11320 prpB 2-methylisocitra 93.5 0.43 9.3E-06 45.9 9.0 82 225-308 16-112 (292)
400 cd03316 MR_like Mandelate race 93.5 1.3 2.7E-05 43.6 12.6 123 134-309 139-270 (357)
401 PLN02979 glycolate oxidase 93.5 0.63 1.4E-05 46.1 10.2 92 213-310 111-252 (366)
402 TIGR00683 nanA N-acetylneurami 93.5 0.57 1.2E-05 45.0 9.9 91 239-332 27-123 (290)
403 cd00957 Transaldolase_TalAB Tr 93.5 0.87 1.9E-05 44.3 11.1 101 213-318 134-252 (313)
404 PRK04147 N-acetylneuraminate l 93.5 7.5 0.00016 37.2 19.2 179 72-311 8-209 (293)
405 TIGR02317 prpB methylisocitrat 93.4 0.46 1E-05 45.6 9.0 83 225-309 12-108 (285)
406 cd02809 alpha_hydroxyacid_oxid 93.4 0.85 1.8E-05 44.0 10.9 87 218-309 108-200 (299)
407 cd00377 ICL_PEPM Members of th 93.3 0.72 1.6E-05 43.2 10.1 94 215-311 59-182 (243)
408 cd04738 DHOD_2_like Dihydrooro 93.3 0.53 1.1E-05 46.0 9.5 104 123-253 203-309 (327)
409 cd00945 Aldolase_Class_I Class 93.3 0.99 2.1E-05 39.8 10.6 64 239-315 19-91 (201)
410 cd03315 MLE_like Muconate lact 93.3 3.5 7.5E-05 38.8 14.8 87 213-309 115-210 (265)
411 COG1646 Predicted phosphate-bi 93.3 0.37 8E-06 44.5 7.7 62 245-313 163-224 (240)
412 cd00950 DHDPS Dihydrodipicolin 93.3 0.58 1.3E-05 44.5 9.6 92 239-333 27-123 (284)
413 PF00701 DHDPS: Dihydrodipicol 93.3 7.7 0.00017 36.9 19.7 181 73-313 7-209 (289)
414 PTZ00411 transaldolase-like pr 93.3 1.3 2.8E-05 43.5 11.9 101 213-318 146-264 (333)
415 TIGR00674 dapA dihydrodipicoli 93.3 0.59 1.3E-05 44.7 9.6 91 240-333 26-121 (285)
416 PRK04147 N-acetylneuraminate l 93.2 0.61 1.3E-05 44.8 9.6 89 240-331 31-125 (293)
417 PRK08318 dihydropyrimidine deh 93.2 0.32 7E-06 49.1 8.1 111 123-254 169-283 (420)
418 PRK12346 transaldolase A; Prov 93.2 1.3 2.7E-05 43.2 11.7 101 213-318 135-253 (316)
419 cd00954 NAL N-Acetylneuraminic 93.2 0.56 1.2E-05 44.9 9.3 92 239-333 27-124 (288)
420 PLN02535 glycolate oxidase 93.1 0.69 1.5E-05 45.9 10.0 90 217-309 115-251 (364)
421 PF00701 DHDPS: Dihydrodipicol 93.1 0.49 1.1E-05 45.2 8.9 89 239-330 28-121 (289)
422 PF13714 PEP_mutase: Phosphoen 93.1 0.61 1.3E-05 43.6 9.1 83 225-309 8-105 (238)
423 cd02940 DHPD_FMN Dihydropyrimi 93.0 0.72 1.6E-05 44.4 9.8 111 123-254 169-282 (299)
424 cd01571 NAPRTase_B Nicotinate 93.0 0.66 1.4E-05 44.9 9.4 93 215-313 172-277 (302)
425 PRK09427 bifunctional indole-3 92.9 1.6 3.4E-05 44.7 12.5 85 213-308 196-283 (454)
426 TIGR00874 talAB transaldolase. 92.9 1.6 3.5E-05 42.5 11.9 101 213-318 134-252 (317)
427 cd06557 KPHMT-like Ketopantoat 92.9 4 8.7E-05 38.5 14.3 47 237-295 162-209 (254)
428 PF03932 CutC: CutC family; I 92.9 0.7 1.5E-05 42.0 8.9 73 234-310 8-93 (201)
429 PRK13398 3-deoxy-7-phosphohept 92.8 1.6 3.5E-05 41.5 11.7 97 213-312 123-234 (266)
430 PLN02493 probable peroxisomal 92.8 0.89 1.9E-05 45.2 10.1 42 266-310 212-253 (367)
431 PRK05581 ribulose-phosphate 3- 92.7 4.9 0.00011 36.4 14.5 125 133-310 13-139 (220)
432 PRK05458 guanosine 5'-monophos 92.6 0.59 1.3E-05 45.7 8.6 67 237-309 100-168 (326)
433 cd02911 arch_FMN Archeal FMN-b 92.6 1.4 2.9E-05 41.1 10.7 40 212-253 180-220 (233)
434 cd04741 DHOD_1A_like Dihydroor 92.5 1.3 2.7E-05 42.7 10.6 111 123-254 158-273 (294)
435 cd00564 TMP_TenI Thiamine mono 92.5 4.5 9.7E-05 35.5 13.6 42 212-253 137-178 (196)
436 PRK03170 dihydrodipicolinate s 92.5 0.81 1.7E-05 43.8 9.3 92 239-333 28-124 (292)
437 cd06556 ICL_KPHMT Members of t 92.4 1 2.2E-05 42.1 9.5 84 225-309 11-109 (240)
438 TIGR01361 DAHP_synth_Bsub phos 92.3 2.1 4.5E-05 40.6 11.6 97 213-312 121-232 (260)
439 PRK05269 transaldolase B; Prov 92.2 1.9 4.2E-05 42.0 11.6 100 213-317 136-253 (318)
440 PRK00311 panB 3-methyl-2-oxobu 92.1 3.2 6.9E-05 39.4 12.6 47 237-295 165-212 (264)
441 PLN02411 12-oxophytodienoate r 92.1 7.6 0.00017 39.0 16.1 88 61-153 14-104 (391)
442 TIGR03586 PseI pseudaminic aci 92.1 13 0.00028 36.4 19.6 126 213-345 123-260 (327)
443 PRK11572 copper homeostasis pr 92.0 0.94 2E-05 42.5 8.8 71 233-310 8-94 (248)
444 TIGR02319 CPEP_Pphonmut carbox 92.0 0.77 1.7E-05 44.3 8.4 83 225-309 15-112 (294)
445 TIGR01768 GGGP-family geranylg 92.0 0.39 8.4E-06 44.4 6.1 43 212-254 165-209 (223)
446 cd02812 PcrB_like PcrB_like pr 91.9 0.38 8.1E-06 44.4 6.0 42 213-254 162-205 (219)
447 COG0167 PyrD Dihydroorotate de 91.8 1.3 2.9E-05 42.9 9.9 107 123-254 162-271 (310)
448 PRK07455 keto-hydroxyglutarate 91.7 1.6 3.6E-05 39.1 9.8 79 215-308 52-131 (187)
449 TIGR03586 PseI pseudaminic aci 91.7 4.7 0.0001 39.5 13.6 81 217-308 82-166 (327)
450 PLN02334 ribulose-phosphate 3- 91.7 9.4 0.0002 35.1 15.1 92 212-310 52-147 (229)
451 COG1954 GlpP Glycerol-3-phosph 91.6 3.6 7.8E-05 36.3 11.3 43 213-255 132-175 (181)
452 PRK13523 NADPH dehydrogenase N 91.4 1.8 3.9E-05 42.6 10.5 78 134-252 225-304 (337)
453 PRK00043 thiE thiamine-phospha 91.4 6.5 0.00014 35.3 13.6 41 213-253 147-188 (212)
454 TIGR02321 Pphn_pyruv_hyd phosp 91.3 1.4 3E-05 42.4 9.4 83 225-309 14-110 (290)
455 TIGR01769 GGGP geranylgeranylg 91.2 0.48 1E-05 43.2 5.8 41 213-253 164-205 (205)
456 PRK11815 tRNA-dihydrouridine s 91.0 2.9 6.2E-05 41.0 11.5 43 210-253 189-233 (333)
457 COG0191 Fba Fructose/tagatose 90.9 15 0.00034 35.1 20.0 109 235-345 157-283 (286)
458 PLN02826 dihydroorotate dehydr 90.9 1.9 4.2E-05 43.5 10.3 42 212-253 326-370 (409)
459 COG2513 PrpB PEP phosphonomuta 90.8 1.6 3.4E-05 41.7 9.0 84 225-310 17-114 (289)
460 cd02922 FCB2_FMN Flavocytochro 90.7 2 4.4E-05 42.3 10.1 82 226-310 118-242 (344)
461 COG0434 SgcQ Predicted TIM-bar 90.7 0.6 1.3E-05 43.3 5.9 64 242-313 173-236 (263)
462 COG2070 Dioxygenases related t 90.5 3.7 7.9E-05 40.4 11.7 118 90-254 93-214 (336)
463 TIGR00259 thylakoid_BtpA membr 90.5 1.8 3.9E-05 40.9 9.1 44 211-255 185-229 (257)
464 COG4981 Enoyl reductase domain 90.5 11 0.00023 39.2 14.9 44 270-315 205-259 (717)
465 PRK04169 geranylgeranylglycery 90.4 0.59 1.3E-05 43.5 5.8 43 212-254 170-214 (232)
466 PLN02424 ketopantoate hydroxym 90.4 9 0.0002 37.5 13.9 48 237-296 186-234 (332)
467 PRK12457 2-dehydro-3-deoxyphos 90.2 3.3 7E-05 39.5 10.5 95 213-310 119-238 (281)
468 PRK00278 trpC indole-3-glycero 90.2 3.2 6.8E-05 39.3 10.6 71 236-312 73-143 (260)
469 cd04734 OYE_like_3_FMN Old yel 89.9 4 8.6E-05 40.2 11.5 41 212-252 272-314 (343)
470 cd03332 LMO_FMN L-Lactate 2-mo 89.9 3.5 7.6E-05 41.3 11.1 42 266-310 241-282 (383)
471 COG2089 SpsE Sialic acid synth 89.8 17 0.00037 35.4 15.1 210 62-306 1-232 (347)
472 cd06557 KPHMT-like Ketopantoat 89.7 1.9 4.1E-05 40.7 8.6 82 225-308 11-110 (254)
473 COG1954 GlpP Glycerol-3-phosph 89.7 1.3 2.8E-05 39.0 6.8 87 216-314 87-178 (181)
474 COG3684 LacD Tagatose-1,6-bisp 89.6 5.5 0.00012 37.5 11.3 123 216-353 148-296 (306)
475 TIGR01362 KDO8P_synth 3-deoxy- 89.6 3.7 8.1E-05 38.6 10.3 93 213-310 105-222 (258)
476 PRK06806 fructose-bisphosphate 89.6 2.4 5.2E-05 40.6 9.4 153 92-254 65-231 (281)
477 TIGR02708 L_lactate_ox L-lacta 89.4 4.1 8.8E-05 40.6 11.0 91 217-310 123-257 (367)
478 cd04737 LOX_like_FMN L-Lactate 89.3 3.5 7.7E-05 40.8 10.6 89 217-308 115-248 (351)
479 PRK15452 putative protease; Pr 89.3 6.8 0.00015 40.0 12.9 88 212-312 43-144 (443)
480 PF00218 IGPS: Indole-3-glycer 89.2 2.4 5.3E-05 40.0 8.9 71 237-313 72-142 (254)
481 cd00954 NAL N-Acetylneuraminic 89.2 21 0.00046 34.0 21.6 179 73-311 6-208 (288)
482 TIGR03128 RuMP_HxlA 3-hexulose 89.1 5.9 0.00013 35.6 11.3 89 213-310 39-134 (206)
483 PRK00311 panB 3-methyl-2-oxobu 89.1 4.7 0.0001 38.3 10.8 92 214-308 4-113 (264)
484 PF01884 PcrB: PcrB family; I 88.9 0.63 1.4E-05 43.2 4.7 40 215-254 172-212 (230)
485 PRK05198 2-dehydro-3-deoxyphos 88.9 4.2 9E-05 38.4 10.1 93 213-310 113-230 (264)
486 PRK13125 trpA tryptophan synth 88.9 20 0.00043 33.4 15.1 88 133-253 15-108 (244)
487 PRK06801 hypothetical protein; 88.8 3 6.4E-05 40.1 9.4 45 210-254 188-234 (286)
488 COG2185 Sbm Methylmalonyl-CoA 88.8 6 0.00013 34.0 10.1 87 214-308 29-121 (143)
489 KOG3111 D-ribulose-5-phosphate 88.7 3.6 7.8E-05 37.0 9.0 113 215-338 103-220 (224)
490 TIGR02317 prpB methylisocitrat 88.7 23 0.00051 34.0 16.6 66 239-315 167-235 (285)
491 COG5564 Predicted TIM-barrel e 88.7 9.1 0.0002 35.3 11.7 78 233-310 163-253 (276)
492 TIGR00222 panB 3-methyl-2-oxob 88.7 16 0.00034 34.7 13.9 47 237-295 164-211 (263)
493 TIGR01036 pyrD_sub2 dihydrooro 88.7 0.86 1.9E-05 44.8 5.7 104 123-253 211-317 (335)
494 PRK11320 prpB 2-methylisocitra 88.7 24 0.00052 34.0 16.6 66 239-315 172-240 (292)
495 PRK07315 fructose-bisphosphate 88.6 3.2 6.9E-05 40.0 9.5 45 210-254 186-233 (293)
496 cd00377 ICL_PEPM Members of th 88.5 2.2 4.8E-05 39.9 8.2 82 225-308 8-103 (243)
497 cd02803 OYE_like_FMN_family Ol 88.5 7.6 0.00016 37.6 12.3 42 212-253 268-311 (327)
498 PF04309 G3P_antiterm: Glycero 88.4 1 2.2E-05 40.1 5.5 42 213-254 128-170 (175)
499 PRK06512 thiamine-phosphate py 88.2 3.6 7.9E-05 37.9 9.3 80 215-311 61-140 (221)
500 TIGR01859 fruc_bis_ald_ fructo 88.0 3.6 7.9E-05 39.4 9.4 153 93-254 65-231 (282)
No 1
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=100.00 E-value=8.7e-92 Score=646.17 Aligned_cols=356 Identities=76% Similarity=1.165 Sum_probs=342.1
Q ss_pred CCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccccc
Q 017492 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (370)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~ 83 (370)
++|++|||+.|+++||+.+|||+.|||+|+.|++.|+++|.+|.|+||+|+|++.+|+||++||+++++||+|||+++++
T Consensus 1 lv~~~dfe~~A~~~L~K~a~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qk 80 (363)
T KOG0538|consen 1 LVNVDDFEALAKQQLPKMAYDYYESGAEDQETLDENINAFRRILFRPRILRDVSKIDTSTTVLGQKISAPIMIAPTAMQK 80 (363)
T ss_pred CccHHHHHHHHHHhhhHHHHHHHhcCCcchhhHHHHHHHHHhhhccchhheecccccccceeccccccceeEEcchHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 84 ~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
+.||+||.++|++|.++|++|++|+.+++|+|||.+++| +..|||||+++|++++.++++||+++||++|++|||+|+.
T Consensus 81 ma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aap~~~rwfQLYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~l 160 (363)
T KOG0538|consen 81 MAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAAPPGIRWFQLYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRL 160 (363)
T ss_pred ccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhCCCCcEEEEEEecCchHHHHHHHHHHHHcCceEEEEEeccccc
Confidence 999999999999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
|+|+.|++|+|.+|+.+..+++.+.......++..++...+++.+.|++++|++|+|+|+.+++||++||+++.|||+.|
T Consensus 161 G~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~LPIvvKGilt~eDA~~A 240 (363)
T KOG0538|consen 161 GRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVLTGEDARKA 240 (363)
T ss_pred cCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhcCcCCeEEEeecccHHHHHH
Confidence 99999999999999988888887766555555566778889999999999999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.++|+++|+||||||||+|..++++++|+++.+++.+++||+.|||+|+|.||+|||+|||.+|.+|||++|++++.|+.
T Consensus 241 ve~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~ 320 (363)
T KOG0538|consen 241 VEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEA 320 (363)
T ss_pred HHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeeccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 359 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~ 359 (370)
||.++++.|++|++.+|++.||.|++++++..+....
T Consensus 321 GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~~ 357 (363)
T KOG0538|consen 321 GVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTEE 357 (363)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCchhhhCccceeech
Confidence 9999999999999999999999999999998755443
No 2
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=4.1e-84 Score=628.24 Aligned_cols=359 Identities=92% Similarity=1.358 Sum_probs=328.4
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||++||++++
T Consensus 2 ~~~~i~D~e~~Ar~~lp~~~~~y~~gga~de~t~~~N~~af~r~~l~PRvLrdv~~~d~~t~~lG~~~~~Pi~iAP~g~~ 81 (367)
T PLN02493 2 EITNVTEYDAIAKQKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQ 81 (367)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHccCcchhHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 83 ~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
++.||++|+++||+|+++|++|++|+.+++++|||++..+++.|||||+++|++.+.++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 82 KMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred hhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhcCCCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
|+|++|+||+|.+|......++..............+...++....++.++|++|+|+|+.|++||++|++.+.++|+.+
T Consensus 162 G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~~~~dA~~a 241 (367)
T PLN02493 162 GRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIA 241 (367)
T ss_pred CcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHH
Confidence 99999999999988766554432211100010112223345555678899999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.++|+|+|+||||||||+|+.+++++.|+++++++.+++|||+|||||+|.|++|+|++||++|++||||+|+++..|.+
T Consensus 242 ~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~ 321 (367)
T PLN02493 242 IQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEA 321 (367)
T ss_pred HHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHH
Confidence 99999999999999999999999999999999988778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCC
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDA 361 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~ 361 (370)
|+.++++.+++||+.+|.++|++++.|+++..+......
T Consensus 322 gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~~~~ 360 (367)
T PLN02493 322 GVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDT 360 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhc
Confidence 999999999999999999999999999999887665433
No 3
>PLN02535 glycolate oxidase
Probab=100.00 E-value=2.4e-81 Score=609.68 Aligned_cols=358 Identities=65% Similarity=1.018 Sum_probs=326.4
Q ss_pred CCCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccc
Q 017492 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (370)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~ 81 (370)
++++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||+++
T Consensus 3 ~~~~~i~d~~~~A~~~lp~~~~~Y~~gga~~e~t~~~N~~af~~~~l~Pr~L~dv~~~d~~t~~lG~~~~~P~~iaP~g~ 82 (364)
T PLN02535 3 DEIVNVNEFQELAKQALPKMYYDFYAGGAEDQHTLKENVQAFRRITFRPRVLVDVSKIDMSTTILGYTISAPIMIAPTAM 82 (364)
T ss_pred cccCCHHHHHHHHHHhCCHHHHHHHhcCCcccHHHHHHHHHHHhCCeecccccCCCCCCCceEECCccccccceechHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017492 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (370)
Q Consensus 82 ~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (370)
+++.||++|+++|++|+++|+++++|+.+++++|||++..+++.|||||+++|++.+.++++||+++||++|++|+|+|+
T Consensus 83 ~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 83 HKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred hcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 99999999999999999999999999999999999998766789999999999999999999999999999999999999
Q ss_pred CcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHH
Q 017492 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (370)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~ 241 (370)
.|+|++|+||+|.+|. .+++..............+...+.....++.++|++|+|+|+.+++||++|++.++++|+.
T Consensus 163 ~g~R~~d~r~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~PvivKgV~~~~dA~~ 239 (364)
T PLN02535 163 LGRREADIKNKMISPQ---LKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSITNLPILIKGVLTREDAIK 239 (364)
T ss_pred CCCchhhhhcCCCCcc---hhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhccCCCEEEecCCCHHHHHH
Confidence 9999999999998873 2222111000000011223344555556889999999999999999999999999999999
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCH
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 321 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~ 321 (370)
+.++|+|+|+|+||||+++++++++++.|+++.+++..++|||++|||+++.|++|+|++||++|++||+|+++++..|+
T Consensus 240 a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~ 319 (364)
T PLN02535 240 AVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGE 319 (364)
T ss_pred HHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccH
Confidence 99999999999999999999999999999999988766899999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCC
Q 017492 322 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDAS 362 (370)
Q Consensus 322 ~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~~ 362 (370)
+|+.++++.+++||+.+|.++|+.+++||++..+...+++.
T Consensus 320 ~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~~l~~~~~~~ 360 (364)
T PLN02535 320 DGVRKVIEMLKDELEITMALSGCPSVKDITRSHVRTERERL 360 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhhhccchHhhh
Confidence 99999999999999999999999999999998887665543
No 4
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=6.1e-81 Score=609.43 Aligned_cols=353 Identities=38% Similarity=0.641 Sum_probs=320.8
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
.++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||+++++||+|||++++
T Consensus 2 ~~~~i~D~~~~Ar~~Lp~~~~~Y~~gga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~ 81 (381)
T PRK11197 2 IISAASDYRAAAQRRLPPFLFHYIDGGAYAEYTLRRNVEDLADIALRQRVLKDMSDLSLETTLFGEKLSMPVALAPVGLT 81 (381)
T ss_pred ccCCHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcceecccccCCCCCCCceEECCcccccchhhChHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 83 ~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
++.||++|+++|++|+++|++|++|+.+++++|||++..+++.|||||+++|++.+.++++||+++||++|++|||+|+.
T Consensus 82 ~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~~~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~ 161 (381)
T PRK11197 82 GMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVP 161 (381)
T ss_pred hccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhccCCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 99999999999999999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCccccccccccc-----------------c-Ccccc----ccchhhHHHhhhcCCCCccHHHHHHH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLD-----------------L-GKMDE----ANDSGLAAYVAGQIDRSLSWKDVKWL 220 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~-----------------~-~~~~~----~~~~~~~~~~~~~~d~~~~~~~i~~i 220 (370)
|+|++|+||+|.+|.. ..+++.... . +..++ ........+.....++.++|++|+||
T Consensus 162 G~Rerd~rn~~~~p~~-~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~l 240 (381)
T PRK11197 162 GARYRDAHSGMSGPNA-AMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWI 240 (381)
T ss_pred CCChhhhhcCCCCCCc-hhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999988842 322211100 0 00000 00111223455556889999999999
Q ss_pred HHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 017492 221 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (370)
Q Consensus 221 r~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala 300 (370)
|+.|++||++|++++.++|+.+.++|+|+|+||||||||++..+++++.|+++++.+.+++|||+||||+++.|++|+|+
T Consensus 241 r~~~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALa 320 (381)
T PRK11197 241 RDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIA 320 (381)
T ss_pred HHhCCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988766899999999999999999999
Q ss_pred hCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 301 LGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 301 lGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
+||++|++||+|+++++..|++||.++++.|++||+.+|.++|+++++||++..+.
T Consensus 321 LGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~l~ 376 (381)
T PRK11197 321 LGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDSLV 376 (381)
T ss_pred cCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhhhc
Confidence 99999999999999999999999999999999999999999999999999988764
No 5
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=1.5e-80 Score=604.00 Aligned_cols=352 Identities=38% Similarity=0.583 Sum_probs=319.8
Q ss_pred CCCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccc
Q 017492 2 GEITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAM 81 (370)
Q Consensus 2 ~~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~ 81 (370)
.+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||++
T Consensus 11 ~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~de~t~~~N~~af~~~~l~PR~L~dv~~~d~~t~llG~~~~~Pv~iaP~g~ 90 (367)
T TIGR02708 11 VDFINTYDLEEMAQQVIPKGAFGYIASGAGDTFTLRENIRAFNHKLIVPHLLQDVENPSTEIEFLGHKLKSPFIMAPVAA 90 (367)
T ss_pred cCCCCHHHHHHHHHHhCCHHHHHHHhcCCchHHHHHHHHHHHHhcCeecccccCCCCCCCceeeCCcccccccccCcHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccC-CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCC
Q 017492 82 QKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTP 160 (370)
Q Consensus 82 ~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p 160 (370)
+++.||++|+++|++|+++|++|++|+.+++++|||.+.. +++.|||||+++|++.+.++++||+++|+++|++|||+|
T Consensus 91 ~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p 170 (367)
T TIGR02708 91 HKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADAT 170 (367)
T ss_pred hhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999874 468999999999999999999999999999999999999
Q ss_pred CCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHH
Q 017492 161 RLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240 (370)
Q Consensus 161 ~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~ 240 (370)
+.|+|++|+||+|.+|......+ ..... ..... ...+....++.++|++|+|+++.+++||++|++.++++|+
T Consensus 171 ~~g~R~~d~r~~~~~p~~~~~~~-~~~~~-----~~~~~-~~~~~~~~~~~~~w~~i~~l~~~~~~PvivKGv~~~eda~ 243 (367)
T TIGR02708 171 VGGNREVDVRNGFVFPVGMPIVQ-EYLPT-----GAGKS-MDNVYKSAKQKLSPRDIEEIAGYSGLPVYVKGPQCPEDAD 243 (367)
T ss_pred CCCcchhhhhcCCCCCCccchhh-hhccc-----CCccc-hhhhccccCCCCCHHHHHHHHHhcCCCEEEeCCCCHHHHH
Confidence 99999999999998885332111 00000 00000 0011122357789999999999999999999999999999
Q ss_pred HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 241 ~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
.+.++|+|+|+||||||||++.++++++.|+++++++++++|||+||||+++.|++|+|++|||+|++|||++|+++.+|
T Consensus 244 ~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G 323 (367)
T TIGR02708 244 RALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGG 323 (367)
T ss_pred HHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcC
Confidence 99999999999999999999999999999999999886689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017492 321 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360 (370)
Q Consensus 321 ~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~ 360 (370)
++||.++++.|++||+.+|.++|+++++||++..+...+.
T Consensus 324 ~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l~~~~~ 363 (367)
T TIGR02708 324 SQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDLRHNPY 363 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCccccccCCC
Confidence 9999999999999999999999999999999998865543
No 6
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.8e-80 Score=602.19 Aligned_cols=342 Identities=44% Similarity=0.707 Sum_probs=313.1
Q ss_pred HHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccCC
Q 017492 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (370)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~ 87 (370)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|++||+++++||+|||+++++++||
T Consensus 1 ~D~~~~Ar~~lp~~~~~Y~~~ga~de~t~~~N~~af~~~~l~PRvLr~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp 80 (361)
T cd04736 1 EDYRSLAKKRLPRMVFDYLEGGAEDEKGLRHNRDAFDRWRFIPRRLVDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWP 80 (361)
T ss_pred ChHHHHHHHhCCHHHHHHHccCcchHHHHHHHHHHHHHcCccccccCCCCCCCCceeECCccccccccccHHHHHhccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhH
Q 017492 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (370)
Q Consensus 88 ~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~ 167 (370)
+||+++||+|+++|++|++|+++++|+|||++..+++.|||||++ +++.++++++||+++||++|++|||+|+.|+|++
T Consensus 81 ~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a~~~~~wfQLY~~-~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~ 159 (361)
T cd04736 81 NGDLALARAAAKAGIPFVLSTASNMSIEDVARQADGDLWFQLYVV-HRELAELLVKRALAAGYTTLVLTTDVAVNGYRER 159 (361)
T ss_pred cHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhhcCCCeEEEEEec-CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchh
Confidence 999999999999999999999999999999987767899999996 6999999999999999999999999999999999
Q ss_pred HhhhhcCCCCccccccccccccCc-------------c---c---cccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcE
Q 017492 168 DIKNRFTLPPFLTLKNFQGLDLGK-------------M---D---EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (370)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~~-------------~---~---~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv 228 (370)
|+||+|.+|.++..+++.+....+ . . .....+...++..+.|+.++|++|+|||+.++.|+
T Consensus 160 d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pv 239 (361)
T cd04736 160 DLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKL 239 (361)
T ss_pred hhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCE
Confidence 999999988766655432111000 0 0 00111233445556788999999999999999999
Q ss_pred EEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 229 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 229 ~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
++|++.+.++|+.+.++|+|+|+||||||+|++..+++++.|+++++.+ ++|||+||||+++.||+|||++||++|++
T Consensus 240 iiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 240 LVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred EEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999999999999999999999999999887 59999999999999999999999999999
Q ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 309 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 309 gr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
|||++|+++..|++||+++++.|++||+.+|.++|+++++||++
T Consensus 318 Gr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~ 361 (361)
T cd04736 318 GRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLTP 361 (361)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCc
Confidence 99999999999999999999999999999999999999999863
No 7
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=3.4e-79 Score=598.16 Aligned_cols=351 Identities=41% Similarity=0.664 Sum_probs=315.4
Q ss_pred CCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeeccccccc
Q 017492 4 ITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQK 83 (370)
Q Consensus 4 ~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~ 83 (370)
++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|+|||+++++||+|||+++++
T Consensus 18 ~~~i~D~~~~Ar~~lp~~~~~y~~gGa~de~t~~~N~~af~~~~l~PRvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 18 PVDPERLEALAREALSPGAFAYVAGGAGSESTARANRDAFSRWRIVPRMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred cCCHHHHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhcCccccccccCCCCCCceeeCCccccccceechHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 84 MAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 84 ~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
+.||++|+++|++|+++|++|++|+++++++|||++..+ ++.|||||+++|++.+.++++||+++||++|++|||+|+.
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~ 177 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAAGDAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSL 177 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhcCCCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 999999999999999999999999999999999998744 6899999999999999999999999999999999999999
Q ss_pred cchhHHhhhhcCCCCc--ccccccc-------ccccCcccc-c----cchhhHHHhhhcCCCCccHHHHHHHHHhcCCcE
Q 017492 163 GRREADIKNRFTLPPF--LTLKNFQ-------GLDLGKMDE-A----NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPI 228 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~--~~~~~~~-------~~~~~~~~~-~----~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv 228 (370)
|+|++|+|++|. |.. ....++. .+....... . .......+.....++.++|+.|+||++.|++||
T Consensus 178 g~Rerd~r~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pv 256 (383)
T cd03332 178 GWRPRDLDLGYL-PFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPI 256 (383)
T ss_pred CCchhhhhcCCC-CCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCE
Confidence 999999999983 421 1111100 000000000 0 011222233334578899999999999999999
Q ss_pred EEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 229 LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 229 ~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
++|++.+.++|+.+.++|+|+|+|||||||++|+++++++.|+++++++.+++||+++||||+|.|++|+|++|||+|++
T Consensus 257 ivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 257 VLKGILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred EEecCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999999999999
Q ss_pred cHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017492 309 GRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 355 (370)
Q Consensus 309 gr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 355 (370)
||||+|+++..|++||+++++.+++||+.+|.++|+++++||+++.+
T Consensus 337 Gr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~~~~ 383 (383)
T cd03332 337 GRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRDAL 383 (383)
T ss_pred cHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCcccC
Confidence 99999999999999999999999999999999999999999988653
No 8
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=2.1e-78 Score=588.35 Aligned_cols=347 Identities=42% Similarity=0.702 Sum_probs=316.5
Q ss_pred CCCChHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccc
Q 017492 3 EITNVMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQ 82 (370)
Q Consensus 3 ~~~~~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~ 82 (370)
+++|++|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|+|++++||+|++||++++.||++|||+++
T Consensus 4 ~~~~i~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~a~~~~~l~prvL~dv~~~d~~t~~lG~~~~~P~~iaP~g~~ 83 (351)
T cd04737 4 DIINLYDLEAEAKKVIPKGAFGYIAGGSEDEWTLRENTRAFNHKQIVPRVLQGVESPDTSTELLGIKLKTPIIMAPIAAH 83 (351)
T ss_pred ccCcHHHHHHHHHHhCCHHHHHHHhcCcchHHHHHHHHHHHHhcCeechhccCCCCCCCceEeCCccccchhhhHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccC-CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017492 83 KMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (370)
Q Consensus 83 ~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (370)
++.||++|+++|++|+++|+++++|+.+++++|||.+.. +++.|||||.++|++.+.++++||+++||++|++|+|+|+
T Consensus 84 ~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~ 163 (351)
T cd04737 84 GLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATV 163 (351)
T ss_pred HhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 999999999999999999999999999999999999876 4789999999999999999999999999999999999999
Q ss_pred CcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHH
Q 017492 162 LGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARI 241 (370)
Q Consensus 162 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~ 241 (370)
.|+|++|+|++|.+|.+....+...... ....+.. ......++.++|++++|+|+.+++||++|++.++++|+.
T Consensus 164 ~g~R~~d~r~~~~~p~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~~~~dA~~ 237 (351)
T cd04737 164 GGNREADIRNKFQFPFGMPNLNHFSEGT-----GKGKGIS-EIYAAAKQKLSPADIEFIAKISGLPVIVKGIQSPEDADV 237 (351)
T ss_pred CCcchHHHHhcCCCCcccchhhhhcccc-----ccCcchh-hhhhhccCCCCHHHHHHHHHHhCCcEEEecCCCHHHHHH
Confidence 9999999999998885443322110000 0000000 111224567899999999999999999999999999999
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCH
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGE 321 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~ 321 (370)
+.++|+|+|+||||||+|+++++++++.|+++++++.+++|||++|||+++.|++|+|++||++|++||+++|+++..|+
T Consensus 238 a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~ 317 (351)
T cd04737 238 AINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGA 317 (351)
T ss_pred HHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchH
Confidence 99999999999999999999999999999999988866899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017492 322 KGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 355 (370)
Q Consensus 322 ~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 355 (370)
+||.++++.+++||+.+|.++|+++++|+++..|
T Consensus 318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~ 351 (351)
T cd04737 318 QGVASVLEHLNKELKIVMQLAGTRTIEDVKRTFL 351 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCCCC
Confidence 9999999999999999999999999999987654
No 9
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=3.4e-77 Score=583.43 Aligned_cols=343 Identities=51% Similarity=0.780 Sum_probs=305.1
Q ss_pred HHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHH
Q 017492 14 AKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYAT 93 (370)
Q Consensus 14 A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~l 93 (370)
||++||+..|+|++||+++|.|+++|+++|++|+|+||+|++++++||+|+|||+++++||++|||+++++.||++|.++
T Consensus 1 Ar~~lp~~~~~yi~gga~~e~t~~~N~~af~~i~l~prvL~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~l 80 (356)
T PF01070_consen 1 ARRRLPPRVFDYIDGGAGDEVTFRRNREAFDRIRLRPRVLRDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERAL 80 (356)
T ss_dssp HHHHS-HHHHHHHHHHSTTTHHHHHHHHGGGGEEE---SSSBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHH
T ss_pred CccccCHHHHHHHHHcCCCcHHHHHHHHHHHHhcccccccCCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhc
Q 017492 94 ARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRF 173 (370)
Q Consensus 94 a~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~ 173 (370)
|++|+++|+++++|++++.++|++.+..+++.|||||.+.|++.+.++++||+++||++++||+|+|+.++|++|+|++|
T Consensus 81 AraA~~~Gi~~~lss~s~~~~e~ia~~~~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~ 160 (356)
T PF01070_consen 81 ARAAAKAGIPMMLSSQSSASLEEIAAASGGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGF 160 (356)
T ss_dssp HHHHHHHTSEEEEETTCSSCHHHHHHHCTSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTC
T ss_pred HHHHhccCcceeccCCccCCHHHHHhhccCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCccccccccc
Confidence 99999999999999999999999998877889999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccCcc-------------ccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHH
Q 017492 174 TLPPFLTLKNFQGLDLGKM-------------DEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDAR 240 (370)
Q Consensus 174 ~~p~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~ 240 (370)
.+|.+++.+++......+. ..........+.....+++++|+.|+|+++.|++||++|++++++||+
T Consensus 161 ~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~~~da~ 240 (356)
T PF01070_consen 161 SVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLSPEDAK 240 (356)
T ss_dssp CCSTTHCTTCGTTTTTTT-TTTGG-----CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-SHHHHH
T ss_pred CCCcccccccccccccCcccccccccccccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEecccHHHHH
Confidence 9988876665532211111 011222344566666788999999999999999999999999999999
Q ss_pred HHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 241 IAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 241 ~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
.+.++|+|+|+||||||||+|+++++++.|+++++++++++|||+|||||+|.|++|+|+|||++|++||||+|++...|
T Consensus 241 ~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g 320 (356)
T PF01070_consen 241 RAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGG 320 (356)
T ss_dssp HHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhh
Confidence 99999999999999999999999999999999999887799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 321 EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 321 ~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
++||.++++.|++||+.+|.++|+++++||+++.|.
T Consensus 321 ~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 321 EEGVERVLEILKEELKRAMFLLGARSIAELRRSLLR 356 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTGGGEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHHhcC
Confidence 999999999999999999999999999999998764
No 10
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=4.8e-75 Score=565.01 Aligned_cols=339 Identities=47% Similarity=0.751 Sum_probs=309.3
Q ss_pred HHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccCC
Q 017492 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (370)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~ 87 (370)
+|||+.||++||+.+|+|++||++||.|+++|+++|++|+|+||+|++++++||+|+|||+++++||+||||+++++.||
T Consensus 1 ~d~~~~A~~~lp~~~~~y~~~ga~~e~t~~~N~~af~~~~l~pr~L~dv~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~ 80 (344)
T cd02922 1 HDFEAAAKKYLSKKAWAYYSSGADDEITLRENLEAFQRIRFRPRVLRDVEKVDTSTTILGHKVSLPFFISPAALAKLAHP 80 (344)
T ss_pred ChHHHHHHHhCCHHHHHHhccCcchHHHHHHHHHHHHhCceeccccCCCCCCCCceEECCcccCCceeeChHHHhhhCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHhcc-CC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcch
Q 017492 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVAST-GP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (370)
Q Consensus 88 ~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~-~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (370)
++|+++|++|.++|++|++|++++.++|||.+. .| .+.|||||.++|++.+.++++||+++||++|++|+|+|+.|+|
T Consensus 81 ~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r 160 (344)
T cd02922 81 DGELNLARAAGKHGILQMISTNASCSLEEIVDARPPDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKR 160 (344)
T ss_pred hHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhcCCCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcc
Confidence 999999999999999999999999999998876 34 6899999999999999999999999999999999999999999
Q ss_pred hHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHc
Q 017492 166 EADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQA 245 (370)
Q Consensus 166 ~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~a 245 (370)
++|+||+|..|..+...+.... ....+...+.....++..+|+.|+|+++.+++||++|++.++++|+.+.++
T Consensus 161 ~~d~r~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~PvivKgv~~~~dA~~a~~~ 233 (344)
T cd02922 161 ERDERLKAEEAVSDGPAGKKTK-------AKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGVQTVEDAVLAAEY 233 (344)
T ss_pred hhhhhhcCCcCccccccccccc-------cccchHHHHHhhccCCCCCHHHHHHHHHhcCCcEEEEcCCCHHHHHHHHHc
Confidence 9999999988765443321100 001112223333456778999999999999999999999999999999999
Q ss_pred CccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 246 G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
|+|+|+|+||||+++|..++++..|+++.+.+ .+++|||++|||+++.|++|+|++||++|++||+|++++.+.|++
T Consensus 234 G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~ 313 (344)
T cd02922 234 GVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEE 313 (344)
T ss_pred CCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHH
Confidence 99999999999999999999999999998753 457999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
||.++++.+++||+.+|.++|+++++||+++
T Consensus 314 gv~~~l~~l~~EL~~~m~l~G~~~i~~l~~~ 344 (344)
T cd02922 314 GVEKAIQILKDEIETTMRLLGVTSLDQLGPS 344 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHhCcC
Confidence 9999999999999999999999999999753
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=4.4e-70 Score=525.69 Aligned_cols=320 Identities=91% Similarity=1.331 Sum_probs=288.6
Q ss_pred cceeeecccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCc
Q 017492 45 RILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGI 124 (370)
Q Consensus 45 ~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~ 124 (370)
-|+|+||+|+|++++||+|++||+++++||++||++++++.||++|+++||+|+++|+++++|+.++.++|||++..+++
T Consensus 43 ~~~lrPRvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a~~~~ 122 (366)
T PLN02979 43 FCDFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGI 122 (366)
T ss_pred eeEEECccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999876678
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.|||||+++|++.+.++++||+++||++|++|||+|+.|+|++|+||+|.+|.....+++..............+...++
T Consensus 123 ~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (366)
T PLN02979 123 RFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYV 202 (366)
T ss_pred eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999887665555422110000001122334455
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
....++.++|++|+|+|+.|++||++|++.+.++|+++.++|+|+|+||||||+|+|+++++++.|+++++++.+++||+
T Consensus 203 ~~~~~~~ltW~dl~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 203 AGQIDRTLSWKDVQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred hhcCCCCCCHHHHHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 55568889999999999999999999999999999999999999999999999999999999999999998886789999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccCCCCC
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWDASLP 364 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~~~~~ 364 (370)
+|||||+|.|++|+|++|||+|++|||++++++..|++||.++++.+++||+.+|.++|+++++|+++..+......++|
T Consensus 283 ~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~~~~~~~~~~ 362 (366)
T PLN02979 283 LDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWDTPRP 362 (366)
T ss_pred EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988766544433
No 12
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.9e-65 Score=494.16 Aligned_cols=349 Identities=44% Similarity=0.632 Sum_probs=320.7
Q ss_pred hHHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccC
Q 017492 7 VMEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAH 86 (370)
Q Consensus 7 ~~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~ 86 (370)
+.|+++.|++++| +.|.|+.+|+++|.|+++|+++|++|.|+||+|++++++|++|+|||+++++||+||||+++++.|
T Consensus 1 ~~~~~~~a~~~~~-~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~~idlst~~~G~~l~~Pi~iapmt~g~~~~ 79 (360)
T COG1304 1 VADLRRAAQRRLP-KAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVDDIDLSTTFLGQKLSAPIIIAPMTGGGLAH 79 (360)
T ss_pred CcchHHHHhhhcc-hHhHHHHhhccccccHhhhhhhhhhheeecccCCCcccCccceEecCccccCCEEEeccccccccC
Confidence 4689999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchh
Q 017492 87 PEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRRE 166 (370)
Q Consensus 87 ~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~ 166 (370)
+++|...+++|..+|.++++++.+++++|++.+..+ ||+|+..+++...++++++.++|++++++|+|.|+.++|+
T Consensus 80 ~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~~----~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~ 155 (360)
T COG1304 80 PEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAPP----FQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERE 155 (360)
T ss_pred hhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCcc----hhhhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHH
Confidence 999999999999999999999999999999886643 8999989999999999999999999999999999999999
Q ss_pred HHhhhhcCCCCccccccccccccCcccc----ccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHH
Q 017492 167 ADIKNRFTLPPFLTLKNFQGLDLGKMDE----ANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIA 242 (370)
Q Consensus 167 ~d~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a 242 (370)
+|.++++..|......|+.+....+..+ .......++.....+|..+|+++.+|++.|..|+++||+.+++|+..+
T Consensus 156 ~d~~~~i~a~~~~~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV~~~~D~~~a 235 (360)
T COG1304 156 RDAVNGISAPALAIHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGILAPEDAAGA 235 (360)
T ss_pred HHHHhccCCCcccccccHHHHhcCCcccccccchhhHHHHHHHhcCCCcccHHHHhHHHHhcCCcHHHhCCCCHHHHHhh
Confidence 9999999888766666654322211111 111124556666678899999999999999999999999999999999
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHH
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~ 322 (370)
.+.|+|+|++|||||+|+||++++++.|+++.++++++++|++|||||+|.|++|||++||++|++||||+|++...|++
T Consensus 236 ~~tg~~~I~vsnhggrqlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~ 315 (360)
T COG1304 236 GGTGADGIEVSNHGGRQLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEA 315 (360)
T ss_pred ccCCceEEEEEcCCCccccCCCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceeeccC
Q 017492 323 GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVTEWD 360 (370)
Q Consensus 323 ~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~~ 360 (370)
||.++++.+++||+.+|.++|+++++||++..++....
T Consensus 316 GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~~ 353 (360)
T COG1304 316 GVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSGR 353 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHhccCceeeccc
Confidence 99999999999999999999999999999998887543
No 13
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=3.5e-59 Score=448.91 Aligned_cols=299 Identities=61% Similarity=0.938 Sum_probs=283.0
Q ss_pred HHHHHHHHHhCCcchhhhhcCCccchhhHHHhHhhcccceeeecccCCCCCCccceeEcCeeecCceeecccccccccCC
Q 017492 8 MEYEAIAKEKLPKMVFDYYASGAEDQWTLQENRNAFSRILFRPRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHP 87 (370)
Q Consensus 8 ~d~~~~A~~~l~~~~~~y~~~ga~~~~t~~~n~~~~~~i~l~pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~ 87 (370)
+||++.|+++||+..|+|+.+|++++.|+++|+..|++|+|+||+|++++++||+|+|||++++.||+++||++.+..|+
T Consensus 1 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~l~~~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~ 80 (299)
T cd02809 1 ADLRALARRRLPKAVFDYIDGGAGDEVTLRRNRAAFDRIRLRPRVLRDVSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHP 80 (299)
T ss_pred ChHHHHHHHhCCHHHhhhhccccchHHHHHHHHHHHHhceeecccCCCCCCCCCceEECCeecCCCeeeCcccccccCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhH
Q 017492 88 EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREA 167 (370)
Q Consensus 88 ~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~ 167 (370)
+++..++++|+++|+++++|++++.+.+++.+..+++.|+|||...+++.+.++++++++.|+++|.+|+|||..+.|
T Consensus 81 ~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~-- 158 (299)
T cd02809 81 DGELATARAAAAAGIPFTLSTVSTTSLEEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR-- 158 (299)
T ss_pred hHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC--
Confidence 999999999999999999999988999999877778999999987789999999999999999999999999863211
Q ss_pred HhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCc
Q 017492 168 DIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA 247 (370)
Q Consensus 168 d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~ 247 (370)
+.|+.++++++.+++||++|++.++++|+.+.++|+
T Consensus 159 --------------------------------------------~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 159 --------------------------------------------LTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred --------------------------------------------CCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCC
Confidence 368899999999999999999999999999999999
Q ss_pred cEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHH
Q 017492 248 AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 327 (370)
Q Consensus 248 d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~ 327 (370)
|+|+++||||++.++++++++.+.++++.+.+++|||++|||+++.|++|+|++|||+|++||||++++...|.+++.++
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999988755799999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 328 LEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 328 l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
++.+++||+.+|.++|+++++||++
T Consensus 275 i~~l~~el~~~m~~~G~~~i~~l~~ 299 (299)
T cd02809 275 LEILRDELERAMALLGCASLADLDP 299 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHhCc
Confidence 9999999999999999999999974
No 14
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=8e-40 Score=317.72 Aligned_cols=270 Identities=27% Similarity=0.358 Sum_probs=216.4
Q ss_pred HhHhhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCC--CC
Q 017492 38 ENRNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS 113 (370)
Q Consensus 38 ~n~~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~--~~ 113 (370)
.+.+.||+|+|+|+.|+ +++++||+|+|||++++.|||++||+|+.....+.+..+|++|+++|+++++++++. ..
T Consensus 17 ~~~~~~d~i~l~~~~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~ 96 (326)
T cd02811 17 GGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALED 96 (326)
T ss_pred cCCCChhhEEEecccCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccC
Confidence 35678999999999998 789999999999999999999999998754444557899999999999999998843 12
Q ss_pred ------HHHHhccCC-CceEEEEeecC----ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccc
Q 017492 114 ------VEEVASTGP-GIRFFQLYVYK----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (370)
Q Consensus 114 ------~eei~~~~~-~~~~~Qly~~~----d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (370)
.+.+.+..+ .+++..+.... +.+...+ .++..+++++.++++++..
T Consensus 97 ~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~---~i~~~~adalel~l~~~q~-------------------- 153 (326)
T cd02811 97 PELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARR---AVEMIEADALAIHLNPLQE-------------------- 153 (326)
T ss_pred hhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHH---HHHhcCCCcEEEeCcchHh--------------------
Confidence 223344444 56666665433 3343333 3445688999998875421
Q ss_pred cccccccCccccccchhhHHHhhhcCCCCc--cHHHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCc
Q 017492 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGA 257 (370)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg 257 (370)
..++..+.+| ..+.|+++++.+++||++|++ .+.++++.+.++|+|+|+|+|+||
T Consensus 154 --------------------~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GG 213 (326)
T cd02811 154 --------------------AVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGG 213 (326)
T ss_pred --------------------hcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCC
Confidence 0011123333 236799999999999999997 789999999999999999999988
Q ss_pred cC--------------------CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 258 RQ--------------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 258 ~~--------------------~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
+. .+++.++...|.++++++. ++|||++|||+++.|++|+|++|||+|++||+||+++.
T Consensus 214 t~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~ 292 (326)
T cd02811 214 TSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAAL 292 (326)
T ss_pred CcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHh
Confidence 41 1346677788888887763 79999999999999999999999999999999999876
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 318 AEGEKGVRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 318 ~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
. |.+++.++++.+++||+.+|.++|++|++||+.
T Consensus 293 ~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~~ 326 (326)
T cd02811 293 E-GEEAVIETIEQIIEELRTAMFLTGAKNLAELKQ 326 (326)
T ss_pred c-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhcC
Confidence 6 999999999999999999999999999999973
No 15
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=9.2e-40 Score=319.90 Aligned_cols=279 Identities=25% Similarity=0.349 Sum_probs=225.8
Q ss_pred HhhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCC--CC--
Q 017492 40 RNAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SS-- 113 (370)
Q Consensus 40 ~~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~--~~-- 113 (370)
...||+|+|.|+.|+ +.+++||+|+|||++++.||+++||+|++....+.|..||++|+++|+++++++++. .+
T Consensus 27 ~~~~d~v~l~~~~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~ 106 (352)
T PRK05437 27 TTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE 106 (352)
T ss_pred CCChheEEEecccCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh
Confidence 457999999999998 788999999999999999999999998764344567899999999999999998853 11
Q ss_pred ----HHHHhccCC-CceEEEEeecCChHHH-HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccccccc
Q 017492 114 ----VEEVASTGP-GIRFFQLYVYKDRNVV-AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (370)
Q Consensus 114 ----~eei~~~~~-~~~~~Qly~~~d~~~~-~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (370)
.+.+.+..| .|++.+|+........ .+..+.++..+++++.++++++..
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe------------------------- 161 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQE------------------------- 161 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchh-------------------------
Confidence 222344444 5677777654442332 223344456789999999875431
Q ss_pred ccCccccccchhhHHHhhhcCCCCc--cHHHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCcc----
Q 017492 188 DLGKMDEANDSGLAAYVAGQIDRSL--SWKDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGAR---- 258 (370)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg~---- 258 (370)
.+++..+.+| ..+.++++++.+++||++|++ .+.++++.+.++|+|+|+|+|+||+
T Consensus 162 ---------------~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ 226 (352)
T PRK05437 162 ---------------LVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAA 226 (352)
T ss_pred ---------------hcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccc
Confidence 0111123333 246799999999999999998 7899999999999999999999883
Q ss_pred -----C---------CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHH
Q 017492 259 -----Q---------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV 324 (370)
Q Consensus 259 -----~---------~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v 324 (370)
+ .+++.++...|.++++++ .++|||++|||+++.|++|+|++|||+|++||+|++++...|.+++
T Consensus 227 ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~-~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v 305 (352)
T PRK05437 227 IENYRARDDRLASYFADWGIPTAQSLLEARSLL-PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAV 305 (352)
T ss_pred hhhhhhhccccccccccccCCHHHHHHHHHHhc-CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHH
Confidence 2 246788889999998874 3799999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhcccceeecc
Q 017492 325 RRVLEMLREEFELAMALSGCRSLKEITRDHIVTEW 359 (370)
Q Consensus 325 ~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~~~ 359 (370)
.++++.+.+||+.+|..+|+++++||++..+....
T Consensus 306 ~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~~~~ 340 (352)
T PRK05437 306 IELIEQWIEELKIAMFLTGAKNIAELRKVPLVLSG 340 (352)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEEecH
Confidence 99999999999999999999999999999876644
No 16
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=100.00 E-value=2.2e-38 Score=308.50 Aligned_cols=276 Identities=26% Similarity=0.369 Sum_probs=216.8
Q ss_pred hhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCC--CH--
Q 017492 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS--SV-- 114 (370)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~--~~-- 114 (370)
+.||+|+|+|+.|+ +++++||||+|||++++.||+++||+|++......+..++++|+++|+++++++++.. ..
T Consensus 21 ~~~~~~~~~~~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~ 100 (333)
T TIGR02151 21 TGFDDITLIHNALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPET 100 (333)
T ss_pred CCcceEEEecCCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhh
Confidence 46999999999997 5789999999999999999999999987533334577999999999999999987521 11
Q ss_pred ----HHHhccCC-CceEEEEeecCChHH-HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccc
Q 017492 115 ----EEVASTGP-GIRFFQLYVYKDRNV-VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLD 188 (370)
Q Consensus 115 ----eei~~~~~-~~~~~Qly~~~d~~~-~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~ 188 (370)
..+.+..+ .|.+.+|......+. ..+..+.++..+++++.++++++..
T Consensus 101 ~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~-------------------------- 154 (333)
T TIGR02151 101 ADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQE-------------------------- 154 (333)
T ss_pred HhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccccc--------------------------
Confidence 22333333 456666543222111 2333444455688999998876431
Q ss_pred cCccccccchhhHHHhhhcCCCCc-cH-HHHHHHHHhcCCcEEEEec---CCHHHHHHHHHcCccEEEEccCCccC----
Q 017492 189 LGKMDEANDSGLAAYVAGQIDRSL-SW-KDVKWLQTITKLPILVKGV---LTAEDARIAVQAGAAGIIVSNHGARQ---- 259 (370)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~i~~ir~~~~~Pv~vK~v---~~~~~a~~a~~aG~d~I~vs~~gg~~---- 259 (370)
.+++.++.+| .| +.++++++.+++||++|.+ .+.++++.+.++|+|+|+|+|+||+.
T Consensus 155 --------------~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~i 220 (333)
T TIGR02151 155 --------------LVQPEGDRNFKGWLEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAGGTSWAQV 220 (333)
T ss_pred --------------ccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccch
Confidence 0111233344 23 7899999999999999987 78999999999999999999998753
Q ss_pred --------------CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHH
Q 017492 260 --------------LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVR 325 (370)
Q Consensus 260 --------------~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~ 325 (370)
.+++.++.+.+.++++ ...++|||++|||+++.|++|+|++|||+|++||+|+..+...|++++.
T Consensus 221 e~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~ 299 (333)
T TIGR02151 221 ENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVI 299 (333)
T ss_pred hhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHH
Confidence 2346667778888776 2237999999999999999999999999999999999987767999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 326 RVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 326 ~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
++++.+.+||+.+|.++|+++++||++..+..
T Consensus 300 ~~i~~~~~eL~~~m~~~G~~~i~el~~~~~~~ 331 (333)
T TIGR02151 300 EEIELIIEELKVAMFLTGAKTIAELKKVPLVI 331 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHccCCeEe
Confidence 99999999999999999999999999887654
No 17
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.97 E-value=6.5e-30 Score=244.93 Aligned_cols=256 Identities=20% Similarity=0.236 Sum_probs=192.6
Q ss_pred hcccceeeecccCC--CCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRILID--VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l~~--~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||+++|+|+.++. .+++|++|+|+|++++.||++++|.. .+|..||++|+++|...++..+ ++|+..+
T Consensus 3 ~FddV~lvp~~lp~~s~~dVdlst~~~~~~l~~P~~inAM~t------~in~~LA~~a~~~G~~~i~hK~---~~E~~~s 73 (321)
T TIGR01306 3 DYEDIQLIPNKCIVNSRSECDTSVTLGKHKFKLPVVPANMQT------IIDEKLAEQLAENGYFYIMHRF---DEESRIP 73 (321)
T ss_pred CcccEEEecCCCCCCCHHHceeeEEECCcEecCcEEeeccch------hhhHHHHHHHHHcCCEEEEecC---CHHHHHH
Confidence 69999999999874 57999999999999999999999942 4799999999999999888653 4655332
Q ss_pred ----cCCCceEEEEeecCChHHHHHHHHHHHHcC--CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccc
Q 017492 120 ----TGPGIRFFQLYVYKDRNVVAQLVRRAERAG--FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (370)
Q Consensus 120 ----~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G--~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (370)
..+......+-.+...+.. +.+....++| .+.+++ |+..
T Consensus 74 fvrk~k~~~L~v~~SvG~t~e~~-~r~~~lv~a~~~~d~i~~--D~ah-------------------------------- 118 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVKACEY-EFVTQLAEEALTPEYITI--DIAH-------------------------------- 118 (321)
T ss_pred HHHhccccccEEEEEcCCCHHHH-HHHHHHHhcCCCCCEEEE--eCcc--------------------------------
Confidence 2221123333333333332 3344445566 466655 3210
Q ss_pred cccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccCCccCC--------CCcc
Q 017492 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--------DYVP 264 (370)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~gg~~~--------~~~~ 264 (370)
++....++.++++|+.++.|.++|+ +.+.++|+.+.++|+|+|.|++++|+.. ..+.
T Consensus 119 --------------g~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 119 --------------GHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred --------------CchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCc
Confidence 1223467899999999988855555 9999999999999999999998877631 1223
Q ss_pred chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh------
Q 017492 265 ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------ 318 (370)
Q Consensus 265 ~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~------ 318 (370)
+.+.++.+++++. ++|||+||||+++.|++|||++|||+||+||+|- ++...
T Consensus 185 ~~l~ai~ev~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~ 262 (321)
T TIGR01306 185 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGE 262 (321)
T ss_pred hHHHHHHHHHHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccc
Confidence 3567899998876 7999999999999999999999999999999882 22110
Q ss_pred ----cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 319 ----EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 319 ----~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
+|. ..+.+++.++..+||..|.++|+++++||+...+..
T Consensus 263 ~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~~~~ 312 (321)
T TIGR01306 263 HKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISYAGGKDLDSLRTVDYVI 312 (321)
T ss_pred cccccceEEEeccCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHhhCCEEE
Confidence 010 128889999999999999999999999999876554
No 18
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.97 E-value=1.5e-29 Score=243.44 Aligned_cols=256 Identities=19% Similarity=0.234 Sum_probs=195.0
Q ss_pred hcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-
Q 017492 42 AFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA- 118 (370)
Q Consensus 42 ~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~- 118 (370)
.||+++|+|..|+ +++++|++|+|+|++++.|||+++|.. ..|..||++|+++|...++.- +++|+..
T Consensus 6 ~Fddv~lv~~~lp~~s~~dvdlst~~~~~~l~~P~~inAM~t------~iN~~LA~~a~~~G~~~~~~k---~~~e~~~~ 76 (326)
T PRK05458 6 DYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQT------IIDEKIAEWLAENGYFYIMHR---FDPEARIP 76 (326)
T ss_pred CccceEEecCCCCCCCHHHcccceEECCcEecCcEEEecccc------hhHHHHHHHHHHcCCEEEEec---CCHHHHHH
Confidence 5999999999997 457999999999999999999999942 478999999999998888854 3566543
Q ss_pred ---ccCCCceEEEEeecCChHHHHHHHHHHHHcCC--cEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccc
Q 017492 119 ---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGF--KAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMD 193 (370)
Q Consensus 119 ---~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~--~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~ 193 (370)
+..+...+..+-.....+.. +.++...++|+ ++|+|. +..
T Consensus 77 ~~r~~~~~~l~v~~~vg~~~~~~-~~~~~Lv~ag~~~d~i~iD--~a~-------------------------------- 121 (326)
T PRK05458 77 FIKDMHEQGLIASISVGVKDDEY-DFVDQLAAEGLTPEYITID--IAH-------------------------------- 121 (326)
T ss_pred HHHhccccccEEEEEecCCHHHH-HHHHHHHhcCCCCCEEEEE--CCC--------------------------------
Confidence 22232224444444434432 34445556654 877763 321
Q ss_pred cccchhhHHHhhhcCCCCccHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC------CCccc-
Q 017492 194 EANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL------DYVPA- 265 (370)
Q Consensus 194 ~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~------~~~~~- 265 (370)
++.....+.|++||+.++ .||++|.+.+.++++.+.++|+|+|.|++|||++. ..+.+
T Consensus 122 --------------gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~ 187 (326)
T PRK05458 122 --------------GHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGG 187 (326)
T ss_pred --------------CchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCc
Confidence 011124567999999995 88888889999999999999999999999999652 12445
Q ss_pred -hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHH---Hh---
Q 017492 266 -TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSL---AA--- 318 (370)
Q Consensus 266 -~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~---~~--- 318 (370)
.+..+.++++.+ ++|||++|||+++.|++|+|++||++||+|++|+ ++. ..
T Consensus 188 w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~ 265 (326)
T PRK05458 188 WQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGE 265 (326)
T ss_pred cHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhcccc
Confidence 445688888776 7999999999999999999999999999999987 110 01
Q ss_pred ----cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 319 ----EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 319 ----~G~~-------~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
+|.+ .+.+++..+..+|+..|.++|++++.||++..++.
T Consensus 266 ~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~~v~ 315 (326)
T PRK05458 266 YKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISYAGGRDLDAIRKVDYVI 315 (326)
T ss_pred ccccCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHhcCCEEE
Confidence 2333 48889999999999999999999999999765443
No 19
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.96 E-value=1.2e-27 Score=227.57 Aligned_cols=256 Identities=21% Similarity=0.243 Sum_probs=194.3
Q ss_pred hhcccceeeecc--cCCCCCCccceeEcCe-----eecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCC
Q 017492 41 NAFSRILFRPRI--LIDVSKIDMNTTVLGF-----KISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (370)
Q Consensus 41 ~~~~~i~l~pr~--l~~~~~vd~s~~l~g~-----~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~ 113 (370)
-.||++.|+|+. +.+-+++|++++|-.+ .+..||+-|.|-.. ++..+|.+.+++|...++. ...+
T Consensus 8 l~f~DVll~P~~s~v~sR~evdl~~~~~~~~~~~~~~~iPii~AnMdtv------~~~~mA~~la~~g~~~~iH--k~~~ 79 (343)
T TIGR01305 8 LDFKDVLLRPKRSTLKSRADVELERTFTFRNSKQTYSGVPIIAANMDTV------GTFEMAAALSQHSIFTAIH--KHYS 79 (343)
T ss_pred CCccceEEecCcCccCcHHHceeeEEEccccCCceeeCCceEecCCCcc------cCHHHHHHHHHCCCeEEEe--eCCC
Confidence 379999999974 3456899999999744 78999999999654 4789999999999999995 4456
Q ss_pred HHHHhcc----CCCc-eEEEEeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccc
Q 017492 114 VEEVAST----GPGI-RFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (370)
Q Consensus 114 ~eei~~~----~~~~-~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (370)
+|+..+. .+.. ...-+-.+.. +...+.++...++ +.+.|+|. +..
T Consensus 80 ~e~~~~~v~~~~~~~~~~~~vsvG~~-~~d~er~~~L~~a~~~~d~iviD--~Ah------------------------- 131 (343)
T TIGR01305 80 VDEWKAFATNSSPDCLQNVAVSSGSS-DNDLEKMTSILEAVPQLKFICLD--VAN------------------------- 131 (343)
T ss_pred HHHHHHHHHhhcccccceEEEEeccC-HHHHHHHHHHHhcCCCCCEEEEE--CCC-------------------------
Confidence 7664321 2211 1111122222 2333445555555 47877764 210
Q ss_pred cccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEc-----cCCccCC
Q 017492 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS-----NHGARQL 260 (370)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs-----~~gg~~~ 260 (370)
++.....+.|+|||+.|+.+.++|| +.++++|+.++++|||+|.|+ +|++|+.
T Consensus 132 ---------------------Ghs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~ 190 (343)
T TIGR01305 132 ---------------------GYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTK 190 (343)
T ss_pred ---------------------CcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCcee
Confidence 1223467899999999977777788 999999999999999999998 7888888
Q ss_pred CCcc-chHHHHHHHHHHccC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh
Q 017492 261 DYVP-ATIMALEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA 318 (370)
Q Consensus 261 ~~~~-~~~~~l~~i~~~~~~-~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~ 318 (370)
++.. |++.++++++++++. ++|||+||||+++.|++|||++|||+||+|+.|. ++++.
T Consensus 191 ~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS 270 (343)
T TIGR01305 191 TGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSS 270 (343)
T ss_pred CCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccch
Confidence 8755 899999999998865 7999999999999999999999999999998662 11110
Q ss_pred -----------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 -----------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 -----------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+|. -.+.+++.++..+|+..|.++|+.+++||++.
T Consensus 271 ~~Am~~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~~ 329 (343)
T TIGR01305 271 DTAMKKHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTYVGAAKLKELSKR 329 (343)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHhC
Confidence 010 02788999999999999999999999999754
No 20
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=99.95 E-value=9e-26 Score=224.32 Aligned_cols=274 Identities=24% Similarity=0.225 Sum_probs=188.4
Q ss_pred CCccceeEcC-----eeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeec
Q 017492 58 KIDMNTTVLG-----FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVY 132 (370)
Q Consensus 58 ~vd~s~~l~g-----~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~ 132 (370)
.++.++++.+ ..+..||+++||+++.+ .++...+++.++++.|....+++. ..+.+++.... ....|+- .
T Consensus 59 ~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~-s~~a~~aLa~aa~~aG~~~~~Geg-g~~~~~~~~~~--~~i~q~~-~ 133 (392)
T cd02808 59 EVDDRVTIGPNAEKPLKLDSPFNISAMSFGAL-SKEAKEALAIGAALAGTASNTGEG-GELPEEREGGG--DIIKQVA-S 133 (392)
T ss_pred ccccceeeccccCCccccccceEecCCCCCcc-cHHHHHHHHHHHHhcCCceeecCC-CCCHHHHhhhh--heEEEec-C
Confidence 3344565554 34578999999998765 344567999999999999988875 46677765332 2345541 1
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCC-cchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhcCCC
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~-g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (370)
.........++. ++++.|-+.--.. | .+-.+|. +++.. +. . ..+....++.+++..++
T Consensus 134 ~~fGv~~~~~~~-----~~~ieik~~QGAkpg-------~gg~l~~~Kv~~e-iA-~------~r~~~~g~~~isp~~~~ 193 (392)
T cd02808 134 GRFGVRPEYLNK-----ADAIEIKIGQGAKPG-------EGGHLPGEKVTEE-IA-K------IRGIPPGVDLISPPPHH 193 (392)
T ss_pred CCCccCHHHccc-----CcEEEEEeccCCCCC-------CCCccccccCCHH-HH-H------HhCCCCCccccCCCCCC
Confidence 112222222211 4555554431110 0 0000111 01000 00 0 00011122344554556
Q ss_pred Ccc-----HHHHHHHHHhcC-CcEEEEecC--CHHHHHHHHHcC-ccEEEEccCCccC--------CCCccchHHHHHHH
Q 017492 211 SLS-----WKDVKWLQTITK-LPILVKGVL--TAEDARIAVQAG-AAGIIVSNHGARQ--------LDYVPATIMALEEV 273 (370)
Q Consensus 211 ~~~-----~~~i~~ir~~~~-~Pv~vK~v~--~~~~a~~a~~aG-~d~I~vs~~gg~~--------~~~~~~~~~~l~~i 273 (370)
++. .+.++++|+.++ +||++|++. +.+++..+.+.| +|+|+|+|++|.+ .+++.|+...|.++
T Consensus 194 ~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v 273 (392)
T cd02808 194 DIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARA 273 (392)
T ss_pred CCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHH
Confidence 653 567999999997 999999986 466766666655 9999999996543 35688999999999
Q ss_pred HHHc-----cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc-----------------------------
Q 017492 274 VKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------- 319 (370)
Q Consensus 274 ~~~~-----~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~----------------------------- 319 (370)
.+++ +.++||+++|||+++.|++|+|++|||+|.+||++|+++.|.
T Consensus 274 ~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~ 353 (392)
T cd02808 274 HQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEG 353 (392)
T ss_pred HHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCch
Confidence 8765 347999999999999999999999999999999999987654
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 320 GEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 320 G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
|.++|.++++.+.+||+.+|..+|++++++|+++++.
T Consensus 354 ~~~~v~~~~~~~~~el~~~m~~~G~~~~~~l~~~~l~ 390 (392)
T cd02808 354 KAERVANYLKSLAEELRELAAALGKRSLELLGRSDLL 390 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCChHHCCHHHhh
Confidence 7789999999999999999999999999999998764
No 21
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.95 E-value=7e-26 Score=222.17 Aligned_cols=289 Identities=21% Similarity=0.275 Sum_probs=190.7
Q ss_pred hhcccceeeecccC--CCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecC-C---CCCCH
Q 017492 41 NAFSRILFRPRILI--DVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-W---STSSV 114 (370)
Q Consensus 41 ~~~~~i~l~pr~l~--~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~-~---~~~~~ 114 (370)
..||++.|+|. ++ +.+++|+++.+.+..+..||+++||.+.+ +..++.+.+++|...+++. . ...+.
T Consensus 16 ~~fddV~lvp~-~~~~~~~dvdls~~~~~~~i~~Piv~a~M~gVt------~~~la~avs~~GglGvl~~~gl~~~~~~~ 88 (368)
T PRK08649 16 YGLDEIAIVPS-RRTRDPEDVSTSWQIDAYRFEIPIIASPMDAVV------SPETAIELGKLGGLGVLNLEGLWTRYEDP 88 (368)
T ss_pred CCcceEEEeCC-CCCCCHHHceeeeeecceeccCcEeccCCcccC------CHHHHHHHHhCCCceEEeeccccccCCCH
Confidence 37999999999 54 45789999999999999999999998764 6799999999999767762 1 22345
Q ss_pred HHHhcc----CCC---ceEEEEee-cCChHHHHHHHHHHHHcCCcEEEEecCC-CCCcchhHHhhhhcCCCCcccccccc
Q 017492 115 EEVAST----GPG---IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQ 185 (370)
Q Consensus 115 eei~~~----~~~---~~~~Qly~-~~d~~~~~~~l~ra~~~G~~ai~itvd~-p~~g~r~~d~~~~~~~p~~~~~~~~~ 185 (370)
+++.+. .+. ...-++|. +.+++.+.++++.+++++. .+.+.. |. ...++..... ..+...-
T Consensus 89 e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V---~v~vr~~~~---~~~e~a~~l~-eaGvd~I--- 158 (368)
T PRK08649 89 EPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGV---IVAVSLSPQ---RAQELAPTVV-EAGVDLF--- 158 (368)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeE---EEEEecCCc---CHHHHHHHHH-HCCCCEE---
Confidence 544321 110 00111221 3456666677766666542 222211 10 0001000000 0000000
Q ss_pred ccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc------C
Q 017492 186 GLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------Q 259 (370)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~------~ 259 (370)
.++... ..+.|. .....|+.+.++++..++||+.+.+.+.++|+.+.++|||+|.++.++|+ .
T Consensus 159 ~vhgrt-------~~~~h~----~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~ 227 (368)
T PRK08649 159 VIQGTV-------VSAEHV----SKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGV 227 (368)
T ss_pred EEeccc-------hhhhcc----CCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCccc
Confidence 000000 001111 11125777777777789999998899999999999999999999754442 1
Q ss_pred CCCccchHHHHHHHHHHcc--------CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc------------
Q 017492 260 LDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE------------ 319 (370)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~--------~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~------------ 319 (370)
...+.|.+.++.++.++.+ .++|||++|||+++.|++|||++|||+||+|++|.....+.
T Consensus 228 ~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~ 307 (368)
T PRK08649 228 LGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPH 307 (368)
T ss_pred CCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCC
Confidence 2236778888887765421 15999999999999999999999999999999986533221
Q ss_pred -----CH-------HHHHHHHH----------HHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 320 -----GE-------KGVRRVLE----------MLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 320 -----G~-------~~v~~~l~----------~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
|. ..+.+++. ++...||..|.++|+++|+||++..++.
T Consensus 308 ~~~~eg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~~g~~~~~~~~~~~~~~ 367 (368)
T PRK08649 308 PSLPRGTRIKVGTTGSLEQILFGPSHLPDGTHNLVGALRRSMATLGYSDLKEFQKVEVVV 367 (368)
T ss_pred CcCCCceEEeCCCcCcHHHHhcCcccccchHHHHHHHHHHHHHhcCCCcHHHHhhcCeEe
Confidence 11 13777877 9999999999999999999999887764
No 22
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.94 E-value=9.9e-26 Score=220.58 Aligned_cols=291 Identities=21% Similarity=0.264 Sum_probs=190.9
Q ss_pred Hhhcccceeeec-ccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCC----CCCCH
Q 017492 40 RNAFSRILFRPR-ILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW----STSSV 114 (370)
Q Consensus 40 ~~~~~~i~l~pr-~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~----~~~~~ 114 (370)
...||+|.|+|. .-++.+++||++.+.+.++..||+.|||++.+ +.+++.+++++|.+.++|.. .....
T Consensus 12 ~~~~d~i~~vp~~~t~~~~~v~~~~~i~~~~l~~PivlAPMagVt------d~~fr~~~~~~Galgvvsaegl~~~~~~~ 85 (369)
T TIGR01304 12 TYSLDDISVVPSRRTRSSKDVDTAWQIDAYRFELPFIAHPMDALV------SPEFAIELGELGGLGVLNLEGLWGRHEDP 85 (369)
T ss_pred cCCcceEEEcCCCCCCChhhccceeEEcceecCCceeecCCCccc------CHHHHHHHHHcCCcccccchHHHhcCCCH
Confidence 358999999996 55788899999999899999999999998875 77999999999996667631 12222
Q ss_pred HHH----hccCCC-------ceEEEEee-cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccc
Q 017492 115 EEV----ASTGPG-------IRFFQLYV-YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (370)
Q Consensus 115 eei----~~~~~~-------~~~~Qly~-~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (370)
+++ ....+. ....++|. +.+++.+.++++.+++++.. +-+.++ |. ...++.... ...
T Consensus 86 ~~~~~QI~g~~~~~~~a~aa~~~~e~~~~~~~p~l~~~ii~~vr~a~Vt-vkiRl~-~~---~~~e~a~~l------~eA 154 (369)
T TIGR01304 86 DPAIAKIAEAYEEGDQAAATRLLQELHAAPLKPELLGERIAEVRDSGVI-TAVRVS-PQ---NAREIAPIV------VKA 154 (369)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHcCCCccChHHHHHHHHHHHhcceE-EEEecC-Cc---CHHHHHHHH------HHC
Confidence 222 111000 00111221 24566666666666666522 122221 11 111110000 000
Q ss_pred cccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC---
Q 017492 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--- 259 (370)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--- 259 (370)
..+.+. .+.+ -..+++.. ..-.|..+.++++..++||+++++.+.++++.++++|||+|.++.+|+..
T Consensus 155 Gad~I~---ihgr--t~~q~~~s----g~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~ 225 (369)
T TIGR01304 155 GADLLV---IQGT--LVSAEHVS----TSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRL 225 (369)
T ss_pred CCCEEE---Eecc--chhhhccC----CCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCccccc
Confidence 000000 0000 00011111 12258889998888999999988999999999999999999865544422
Q ss_pred -CCCccchHHHHHHHHHHc-------cC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC----------
Q 017492 260 -LDYVPATIMALEEVVKAT-------QG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG---------- 320 (370)
Q Consensus 260 -~~~~~~~~~~l~~i~~~~-------~~-~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G---------- 320 (370)
+..+.+....+.++.++. ++ .+|||++|||+++.|++|+|++|||+||+|++|+....+.|
T Consensus 226 ~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~ 305 (369)
T TIGR01304 226 VLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAA 305 (369)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhc
Confidence 223567777777776542 11 49999999999999999999999999999999986543321
Q ss_pred -------------HHH----HHHHH----------HHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 321 -------------EKG----VRRVL----------EMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 321 -------------~~~----v~~~l----------~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
..| +++++ .+|...|+++|..+|+++++++++..+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~~ 368 (369)
T TIGR01304 306 HPRLPRGVVTESGTVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLKEFQKVSLT 368 (369)
T ss_pred CccCCccccccccccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhhhhhhccee
Confidence 112 55555 4789999999999999999999998764
No 23
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.94 E-value=7.4e-25 Score=212.72 Aligned_cols=258 Identities=24% Similarity=0.327 Sum_probs=193.1
Q ss_pred hcccceeeeccc-CCCCCCccceeEcC-eeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTVLG-FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l~g-~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|... .+.+++|++|.|.+ ..++.||+.|||.+.+ +..++.+.+++|...++.. ..+++++.+
T Consensus 3 ~~ddv~l~p~~~~~~~~~vdl~t~l~~~~~l~~Piv~apM~~vt------~~~ma~ava~~GglGvi~~--~~~~~~~~~ 74 (325)
T cd00381 3 TFDDVLLVPGYSTVLPSEVDLSTKLTKNITLNIPLVSAPMDTVT------ESEMAIAMARLGGIGVIHR--NMSIEEQAE 74 (325)
T ss_pred CcccEEEeCCCCCCCHHHceeeEEecCccccCCCEEecCCCcCC------cHHHHHHHHHCCCEEEEeC--CCCHHHHHH
Confidence 699999999764 45788999999988 8899999999998764 6689999999998777753 244555432
Q ss_pred c---CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCcccccc
Q 017492 120 T---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (370)
Q Consensus 120 ~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (370)
. ...+..+..-.+.+ ....+.++.+.++|++.++++.-.
T Consensus 75 ~i~~vk~~l~v~~~~~~~-~~~~~~~~~l~eagv~~I~vd~~~------------------------------------- 116 (325)
T cd00381 75 EVRKVKGRLLVGAAVGTR-EDDKERAEALVEAGVDVIVIDSAH------------------------------------- 116 (325)
T ss_pred HHHHhccCceEEEecCCC-hhHHHHHHHHHhcCCCEEEEECCC-------------------------------------
Confidence 2 12222222222222 334456667777899988875310
Q ss_pred chhhHHHhhhcCCCCccHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCcc------CCCCccchHHH
Q 017492 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMA 269 (370)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~------~~~~~~~~~~~ 269 (370)
+++...++.++++++..+ +||++..+.+.++|+.+.++|+|+|+++..+|+ ...++.+.+..
T Consensus 117 -----------G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~ 185 (325)
T cd00381 117 -----------GHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATA 185 (325)
T ss_pred -----------CCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHH
Confidence 011224567999999874 899988899999999999999999999543322 13457788888
Q ss_pred HHHHHHHccC-CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc-----------------------------
Q 017492 270 LEEVVKATQG-RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------- 319 (370)
Q Consensus 270 l~~i~~~~~~-~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~----------------------------- 319 (370)
+.++.+++.. ++|||++|||+++.|++|+|++||++||+||.|+-...+.
T Consensus 186 i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~ 265 (325)
T cd00381 186 VADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGD 265 (325)
T ss_pred HHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccc
Confidence 8888876632 6999999999999999999999999999999986321110
Q ss_pred -------------C-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 320 -------------G-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 320 -------------G-------~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
| .-.+.+.+.++...||..|.++|+++|+||++....
T Consensus 266 ~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~~~~ 322 (325)
T cd00381 266 RYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARF 322 (325)
T ss_pred cccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhcCeE
Confidence 1 012888999999999999999999999999987543
No 24
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.92 E-value=1.1e-23 Score=203.84 Aligned_cols=256 Identities=24% Similarity=0.318 Sum_probs=180.5
Q ss_pred hcccceeeecc---cCCCCCCccceeE-cCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH
Q 017492 42 AFSRILFRPRI---LIDVSKIDMNTTV-LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV 117 (370)
Q Consensus 42 ~~~~i~l~pr~---l~~~~~vd~s~~l-~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei 117 (370)
.||++.|+|.. +++..++|+++.+ -+.+++.||+-|||...+ |..+|.+.++.|...++.- ++++|+.
T Consensus 4 tfdDVllvP~~s~v~~s~~dv~~~~~~~~~~~l~iPivsa~MDtVt------e~~mAiama~~Gglgvih~--~~~~e~q 75 (352)
T PF00478_consen 4 TFDDVLLVPGRSTVLPSRSDVSLSTKLTRNITLKIPIVSAPMDTVT------ESEMAIAMARLGGLGVIHR--NMSIEEQ 75 (352)
T ss_dssp -GGGEEEE--SBSSTGGGGG-BEEEESSTSEEESSSEEE-SSTTTS------SHHHHHHHHHTTSEEEEES--SSCHHHH
T ss_pred ccccEEEecCCCCCCCCHhheECcccccCCEeecCceEecCccccc------hHHHHHHHHHhcCCceecC--CCCHHHH
Confidence 69999999976 3455666776555 579999999999996553 7789999999999988854 3555532
Q ss_pred h-------ccCC-------CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccc
Q 017492 118 A-------STGP-------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (370)
Q Consensus 118 ~-------~~~~-------~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (370)
. +..| ....+=...+... ...+.++...++|++.|+|.. ..
T Consensus 76 ~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~-~~~er~~~L~~agvD~ivID~--a~---------------------- 130 (352)
T PF00478_consen 76 AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRD-DDFERAEALVEAGVDVIVIDS--AH---------------------- 130 (352)
T ss_dssp HHHHHHHHTHHTTHHBHTTSCBCEEEEEESST-CHHHHHHHHHHTT-SEEEEE---SS----------------------
T ss_pred HHHHhhhccccccccccccccceEEEEecCCH-HHHHHHHHHHHcCCCEEEccc--cC----------------------
Confidence 2 1111 1222222222222 123455556678999998742 11
Q ss_pred ccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccC---
Q 017492 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--- 259 (370)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--- 259 (370)
++.....+.++++|+.++ +||+...+.+.+.++.++++|||+|.|.-.+|+-
T Consensus 131 ------------------------g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtT 186 (352)
T PF00478_consen 131 ------------------------GHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTT 186 (352)
T ss_dssp ------------------------TTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHH
T ss_pred ------------------------ccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccc
Confidence 112234667999999995 9999999999999999999999999997655541
Q ss_pred ---CCCccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH----------------------
Q 017492 260 ---LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV---------------------- 313 (370)
Q Consensus 260 ---~~~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l---------------------- 313 (370)
.-.|.|.+.++.++.++.. ..+|||+||||+++.|++|||++|||+||+|+.|-
T Consensus 187 r~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrG 266 (352)
T PF00478_consen 187 REVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRG 266 (352)
T ss_dssp HHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEE
T ss_pred ccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecc
Confidence 2347788899999988764 37999999999999999999999999999999772
Q ss_pred ----HHHHh------------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 314 ----YSLAA------------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 314 ----~~~~~------------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
.++.. +|. -.+.+++..|...||..|.++|+.+|+||+...
T Consensus 267 MgS~~A~~~~~~~~~ry~~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 267 MGSLGAMKKRRGSGDRYFQAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp TTSHHHHHHHSTTGCTCTSSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred cccHHHHhhccccchhccccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 11110 111 138899999999999999999999999999874
No 25
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.92 E-value=2.9e-23 Score=197.60 Aligned_cols=256 Identities=20% Similarity=0.197 Sum_probs=188.5
Q ss_pred hhcccceeeeccc--CCCCCCccceeEc-----CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCC
Q 017492 41 NAFSRILFRPRIL--IDVSKIDMNTTVL-----GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS 113 (370)
Q Consensus 41 ~~~~~i~l~pr~l--~~~~~vd~s~~l~-----g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~ 113 (370)
-.||++.|+|+.- .+-+++|++.+|. ...+..||+-|+|-.. ++..+|.+.+++|...++. ...+
T Consensus 9 l~f~DVll~P~~s~v~sRsevdl~~~~~~~~~~~~~~giPii~AnMdTV------~~~~mA~~la~~g~~~~iH--k~~~ 80 (346)
T PRK05096 9 LGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTV------GTFEMAKALASFDILTAVH--KHYS 80 (346)
T ss_pred CCceeEEEecCcCccccHHHceecceeeeecccccccCCceEecCCCcc------ccHHHHHHHHHCCCeEEEe--cCCC
Confidence 3799999999743 4557899988774 3456799999999654 4789999999999999995 4456
Q ss_pred HHHHhcc----CCCc-eEEEEeecCChHHHHHHHHHHHH--cCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccc
Q 017492 114 VEEVAST----GPGI-RFFQLYVYKDRNVVAQLVRRAER--AGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQG 186 (370)
Q Consensus 114 ~eei~~~----~~~~-~~~Qly~~~d~~~~~~~l~ra~~--~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~ 186 (370)
+|+..+. .+.. ...-+-.+..++. .+.++...+ +|++.|+|.+ . +
T Consensus 81 ~e~~~~fv~~~~~~~~~~~~vavG~~~~d-~er~~~L~~~~~g~D~iviD~--A----------h--------------- 132 (346)
T PRK05096 81 VEEWAAFVNNSSADVLKHVMVSTGTSDAD-FEKTKQILALSPALNFICIDV--A----------N--------------- 132 (346)
T ss_pred HHHHHHHHHhccccccceEEEEecCCHHH-HHHHHHHHhcCCCCCEEEEEC--C----------C---------------
Confidence 7764432 1111 1111222333332 344444444 5888887742 1 0
Q ss_pred cccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----C--
Q 017492 187 LDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q-- 259 (370)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~-- 259 (370)
++.....+.|++||+.+ +++|+...+.+++.++.++++|||+|.|.-..|+ +
T Consensus 133 ---------------------Ghs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~v 191 (346)
T PRK05096 133 ---------------------GYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVK 191 (346)
T ss_pred ---------------------CcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccc
Confidence 12234677899999998 6899999999999999999999999999765553 2
Q ss_pred CCCccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh
Q 017492 260 LDYVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA 318 (370)
Q Consensus 260 ~~~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~ 318 (370)
...|.|.+.++.++.++.+ ..+|||+||||++..|++|||++|||+||+|+.|- ++++.
T Consensus 192 tGvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS 271 (346)
T PRK05096 192 TGVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSS 271 (346)
T ss_pred cccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEecccc
Confidence 2246788888888887654 37899999999999999999999999999999872 22111
Q ss_pred -----------------cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 -----------------EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 -----------------~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+|. -.+.+++..+..+|+..|.++|..+|+||++.
T Consensus 272 ~~Am~~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~ 330 (346)
T PRK05096 272 ESAMKRHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKR 330 (346)
T ss_pred HHHHhhccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHhC
Confidence 010 02888999999999999999999999999754
No 26
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.91 E-value=8.8e-23 Score=201.19 Aligned_cols=256 Identities=20% Similarity=0.263 Sum_probs=183.3
Q ss_pred hhcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|..- ...+++|++|.|. ...+..||+-|||.+.+ +..+|.+.+++|...+++. ..++|++.
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt------~~~lA~AvA~aGGlGvI~~--~~~~e~l~ 81 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVT------ESQMAIAIAKEGGIGIIHK--NMSIEAQR 81 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCC------CHHHHHHHHHCCCEEEecC--CCCHHHHH
Confidence 4799999999754 3457889998885 46678999999997654 5689999999999988873 46676643
Q ss_pred ccC------C--Cce------------------EE------------------------EEee----cCChHHHHHHHHH
Q 017492 119 STG------P--GIR------------------FF------------------------QLYV----YKDRNVVAQLVRR 144 (370)
Q Consensus 119 ~~~------~--~~~------------------~~------------------------Qly~----~~d~~~~~~~l~r 144 (370)
+.. . .+. .+ ||+. +.. ..+.+.++.
T Consensus 82 ~eI~~vk~~~~~~~i~~~~d~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~-~~~~~~v~~ 160 (404)
T PRK06843 82 KEIEKVKTYKFQKTINTNGDTNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSID-IDTIERVEE 160 (404)
T ss_pred HHHHHHHhhcCCCceeecccccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCC-HHHHHHHHH
Confidence 211 0 000 00 0110 111 123344455
Q ss_pred HHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc
Q 017492 145 AERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT 224 (370)
Q Consensus 145 a~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~ 224 (370)
+.++|++.|+|. +. .+++...++.++++++.+
T Consensus 161 lv~aGvDvI~iD--~a----------------------------------------------~g~~~~~~~~v~~ik~~~ 192 (404)
T PRK06843 161 LVKAHVDILVID--SA----------------------------------------------HGHSTRIIELVKKIKTKY 192 (404)
T ss_pred HHhcCCCEEEEE--CC----------------------------------------------CCCChhHHHHHHHHHhhC
Confidence 555666655542 11 012233567899999998
Q ss_pred -CCcEEEEecCCHHHHHHHHHcCccEEEEccCCc-----cCCC-CccchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHH
Q 017492 225 -KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----RQLD-YVPATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVF 296 (370)
Q Consensus 225 -~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg-----~~~~-~~~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~ 296 (370)
+++|+++.+.+.++++.+.++|+|+|.++...| +..+ .+.|.+..+.++.+.+. .++|||++|||+++.|++
T Consensus 193 p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~ 272 (404)
T PRK06843 193 PNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVV 272 (404)
T ss_pred CCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHH
Confidence 689999999999999999999999999864333 3333 46677887777766542 379999999999999999
Q ss_pred HHHHhCCCEEEEcHHHHH--------------------HHHh-------------------------cCHH-------HH
Q 017492 297 KALALGASGIFIGRPVVY--------------------SLAA-------------------------EGEK-------GV 324 (370)
Q Consensus 297 kalalGAd~V~igr~~l~--------------------~~~~-------------------------~G~~-------~v 324 (370)
|||++||++||+|++|.- +++. .|.+ .+
T Consensus 273 KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v 352 (404)
T PRK06843 273 KAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKL 352 (404)
T ss_pred HHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccccCCCccEEEecCCCCH
Confidence 999999999999998832 1110 0100 18
Q ss_pred HHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 325 RRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 325 ~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.+++.+|..+||..|.++|+.+|.||+..
T Consensus 353 ~~~~~~l~gglrs~m~y~Ga~~i~el~~~ 381 (404)
T PRK06843 353 KDILTQLKGGLMSGMGYLGAATISDLKIN 381 (404)
T ss_pred HHHHHHHHHHHHHHhhccCCCcHHHHHhc
Confidence 88999999999999999999999999854
No 27
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.91 E-value=1.5e-22 Score=194.96 Aligned_cols=238 Identities=22% Similarity=0.306 Sum_probs=172.3
Q ss_pred cceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecC---------------------C------CCCC
Q 017492 61 MNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS---------------------W------STSS 113 (370)
Q Consensus 61 ~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~---------------------~------~~~~ 113 (370)
++|+|+|.+++.||++||...+. +....+.+.+.|..+++.. + .+..
T Consensus 1 l~~~~~g~~l~npi~~aag~~~~------~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g 74 (300)
T TIGR01037 1 LEVELFGIRFKNPLILASGIMGS------GVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPG 74 (300)
T ss_pred CcEEECCEECCCCCEeCCcCCCC------CHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcC
Confidence 47899999999999999953221 2233444555588777751 1 1112
Q ss_pred HHH----Hhcc---CCCceEEEEeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccc
Q 017492 114 VEE----VAST---GPGIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (370)
Q Consensus 114 ~ee----i~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (370)
.+. +.+. .+.|.++||+ ..+.+...+.++.++++ +++++.+|+.||.... . +
T Consensus 75 ~~~~~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~--------~------g---- 135 (300)
T TIGR01037 75 VEAFLEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKG--------G------G---- 135 (300)
T ss_pred HHHHHHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCC--------C------c----
Confidence 222 2211 1247899997 46777778888888876 3999999999997410 0 0
Q ss_pred cccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH----HHHHHHHHcCccEEEEccC-CccC
Q 017492 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQ 259 (370)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~----~~a~~a~~aG~d~I~vs~~-gg~~ 259 (370)
..+. .++++..+.++++|+.+++||++|+..+. +.++.+.++|+|+|+++|+ .++.
T Consensus 136 -----------------~~l~--~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~ 196 (300)
T TIGR01037 136 -----------------IAIG--QDPELSADVVKAVKDKTDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMK 196 (300)
T ss_pred -----------------cccc--cCHHHHHHHHHHHHHhcCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccc
Confidence 0001 24556788999999999999999987554 3477889999999999874 2211
Q ss_pred C------------C---Cccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 260 L------------D---YVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 260 ~------------~---~~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
. . .+++ .++.+.++++.+ ++|||++|||++++|+.+++.+|||+|++||++++. +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~----p 270 (300)
T TIGR01037 197 IDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYR----G 270 (300)
T ss_pred cccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcC----c
Confidence 1 0 1222 235677777766 799999999999999999999999999999999862 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 321 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 321 ~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.+++.++++|..+|...|+++++|+.+.
T Consensus 271 -----~~~~~i~~~l~~~~~~~g~~~~~e~~g~ 298 (300)
T TIGR01037 271 -----FAFKKIIEGLIAFLKAEGFTSIEELIGI 298 (300)
T ss_pred -----hHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 4788999999999999999999999764
No 28
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.89 E-value=3.4e-21 Score=187.32 Aligned_cols=239 Identities=20% Similarity=0.231 Sum_probs=168.9
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC----------------------------
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~---------------------------- 110 (370)
|++|+++|.+++.||++|.-+.+. +....+.+...|..+++. |..
T Consensus 1 dL~v~~~Gl~l~nPv~~ASg~~~~------~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~i 74 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASASPLSR------NLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYF 74 (325)
T ss_pred CceEEECCEecCCCCEeCCcCCCC------CHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCccccc
Confidence 679999999999999997543322 333444466777665552 210
Q ss_pred ------CCCHH----HHhcc---CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC
Q 017492 111 ------TSSVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (370)
Q Consensus 111 ------~~~~e----ei~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~ 177 (370)
+..++ ++.+. ...+.+.|+. ..+.+...+.++.++++|++++.+|+.||... |
T Consensus 75 n~~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~------------~- 140 (325)
T cd04739 75 PEYGRYNLGPEEYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTD------------P- 140 (325)
T ss_pred ccccccCcCHHHHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC------------C-
Confidence 01111 22221 1246788885 45667777888888889999999999875210 0
Q ss_pred ccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC----HHHHHHHHHcCccEEEEc
Q 017492 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~----~~~a~~a~~aG~d~I~vs 253 (370)
.. . +. ..+....+.++++++.+++||++|+..+ .+.++.+.++|+|+|+++
T Consensus 141 ~~--~----------------g~-------~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 141 DI--S----------------GA-------EVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred Cc--c----------------cc-------hHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 00 0 00 0012356789999999999999998744 356788999999999999
Q ss_pred cCCc-cCCC---------C---ccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 254 NHGA-RQLD---------Y---VPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 254 ~~gg-~~~~---------~---~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~ 316 (370)
|+.. ...| + |++ .+..+.++++.+ ++||+++|||++++|+.++|.+||++|++||++++
T Consensus 196 nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~-- 271 (325)
T cd04739 196 NRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR-- 271 (325)
T ss_pred cCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh--
Confidence 8742 1111 1 111 334556666554 79999999999999999999999999999999986
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 317 AAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 317 ~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.|+. ++..+.+||..+|...|+++++|+++.
T Consensus 272 --~gp~----~~~~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 272 --HGPD----YIGTLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred --cCch----HHHHHHHHHHHHHHHcCCCCHHHHhcc
Confidence 2553 778899999999999999999999884
No 29
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.89 E-value=3.1e-21 Score=185.86 Aligned_cols=239 Identities=21% Similarity=0.259 Sum_probs=177.2
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCC--------------------------C
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------S 112 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~--------------------------~ 112 (370)
|++|+++|.+++.||++|+-... .+..+++.+.+.|..+++. |... .
T Consensus 1 ~l~~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~ 74 (301)
T PRK07259 1 RLSVELPGLKLKNPVMPASGTFG------FGGEYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNP 74 (301)
T ss_pred CCceEECCEECCCCcEECCcCCC------CCHHHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCc
Confidence 68999999999999999873222 1336777777888776662 3211 1
Q ss_pred CHH----HHhcc---CCCceEEEEeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhhhhcCCCCccccccc
Q 017492 113 SVE----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNF 184 (370)
Q Consensus 113 ~~e----ei~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~ 184 (370)
.++ ++.+. ...+.+.||. ..+.+...+.+++++++| ++++.||+.||....- +.
T Consensus 75 g~~~~~~~~~~~~~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g------g~----------- 136 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG------GM----------- 136 (301)
T ss_pred CHHHHHHHHHHHHhccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC------cc-----------
Confidence 122 22221 1246889986 457788888999999998 9999999999863100 00
Q ss_pred cccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHH----HHHHHHHcCccEEEEccCC-ccC
Q 017492 185 QGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE----DARIAVQAGAAGIIVSNHG-ARQ 259 (370)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~----~a~~a~~aG~d~I~vs~~g-g~~ 259 (370)
.+. .++.+.++.++++|+.+++||++|+..+.+ .++.+.++|+|+|+++|.. |..
T Consensus 137 ------------------~~~--~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~ 196 (301)
T PRK07259 137 ------------------AFG--TDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMA 196 (301)
T ss_pred ------------------ccc--cCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccc
Confidence 000 244567889999999999999999985543 3788899999999997731 110
Q ss_pred --C-------------CCc----cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 260 --L-------------DYV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 260 --~-------------~~~----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
. ..+ +..++.+.++++.+ ++||+++|||++++|+.+++++|||+|++||++++ +
T Consensus 197 ~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~ 269 (301)
T PRK07259 197 IDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----D 269 (301)
T ss_pred cccccCceeecCCcCccCCcCcccccHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----C
Confidence 0 011 22467788888876 79999999999999999999999999999999986 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 321 EKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 321 ~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+ .+++.++++++.+|...|+++++|+.+.
T Consensus 270 P----~~~~~i~~~l~~~~~~~g~~~i~~~~g~ 298 (301)
T PRK07259 270 P----YAFPKIIEGLEAYLDKYGIKSIEEIVGI 298 (301)
T ss_pred c----HHHHHHHHHHHHHHHHcCCCCHHHHhCc
Confidence 3 4778999999999999999999999764
No 30
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.88 E-value=7.8e-21 Score=185.65 Aligned_cols=240 Identities=19% Similarity=0.210 Sum_probs=167.9
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC----------------------------
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS---------------------------- 110 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~---------------------------- 110 (370)
|++|+++|.+|+.||++|.-+.+. .....+.+.+.|...++. |..
T Consensus 2 ~l~~~~~Gl~l~nPv~~asg~~~~------~~~~~~~~~~~g~Gavv~kti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (334)
T PRK07565 2 DLSTTYLGLTLRNPLVASASPLSE------SVDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELDRHLTHGTESFAEALDY 75 (334)
T ss_pred CceEEECCEecCCCCEecCcCCCC------CHHHHHHHHHCCCeEEEEeeCCHHHhhccccccccccccCCCcchhhhhh
Confidence 689999999999999988754432 222333366666665542 110
Q ss_pred -------CCCHHH----Hh---ccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCC
Q 017492 111 -------TSSVEE----VA---STGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLP 176 (370)
Q Consensus 111 -------~~~~ee----i~---~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p 176 (370)
+..+++ +. +....+.+.|+.. .+.+...+.+++++++|++++.+|+.||... +
T Consensus 76 ~n~~gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~------------~ 142 (334)
T PRK07565 76 FPEPAKFYVGPEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTD------------P 142 (334)
T ss_pred hhhhhccCcCHHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC------------C
Confidence 111222 11 1112467888864 4556667788888889999999999886320 0
Q ss_pred CccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC----HHHHHHHHHcCccEEEE
Q 017492 177 PFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIV 252 (370)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~----~~~a~~a~~aG~d~I~v 252 (370)
... +. ......++.++++++.+++||++|+... .+.++.+.++|+|+|++
T Consensus 143 ---~~~----------------g~-------~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 143 ---DIS----------------GA-------EVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred ---CCc----------------cc-------cHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 000 00 0012257889999999999999997643 24578889999999999
Q ss_pred ccCCc-cCC---------CCccc-------hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 253 SNHGA-RQL---------DYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 253 s~~gg-~~~---------~~~~~-------~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
+|+.. ... .++.+ .+..+.++++.+ ++|||++|||++++|+.++|.+||++|++||++++
T Consensus 197 ~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~- 273 (334)
T PRK07565 197 FNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADLAATTGVHDAEDVIKMLLAGADVVMIASALLR- 273 (334)
T ss_pred ECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh-
Confidence 88642 111 12211 234455555555 79999999999999999999999999999999987
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 316 LAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 316 ~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
.|+ .+++.+.+||+.+|...|+++++|+++..
T Consensus 274 ---~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~g~~ 305 (334)
T PRK07565 274 ---HGP----DYIGTILRGLEDWMERHGYESLQQFRGSM 305 (334)
T ss_pred ---hCc----HHHHHHHHHHHHHHHHcCCCCHHHHhccc
Confidence 244 47889999999999999999999998854
No 31
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.88 E-value=1.1e-20 Score=181.51 Aligned_cols=236 Identities=22% Similarity=0.277 Sum_probs=170.1
Q ss_pred ceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecC-CCCC--------------------------CH
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSS-WSTS--------------------------SV 114 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~-~~~~--------------------------~~ 114 (370)
+|+++|.+++.||++|+-.. + ....+.+.+...|..+++.. .... .+
T Consensus 1 ~~~~~G~~~~nP~~~aag~~-~-----~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~ 74 (296)
T cd04740 1 SVELAGLRLKNPVILASGTF-G-----FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGV 74 (296)
T ss_pred CeEECCEEcCCCCEECCCCC-C-----CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCH
Confidence 58899999999999985211 1 12345555544446666532 2110 11
Q ss_pred H----HHhcc---CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCcccccccccc
Q 017492 115 E----EVAST---GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (370)
Q Consensus 115 e----ei~~~---~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (370)
+ ++.+. ...+..+||. ..+.+...+.+++++++|++++.+|+.||....| .
T Consensus 75 ~~~~~~~~~~~~~~~~p~ivsi~-g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~--------------g------- 132 (296)
T cd04740 75 EAFLEELLPWLREFGTPVIASIA-GSTVEEFVEVAEKLADAGADAIELNISCPNVKGG--------------G------- 132 (296)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEe-cCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCC--------------c-------
Confidence 2 22221 1257889997 4567788889999999999999999999963111 0
Q ss_pred ccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH----HHHHHHHHcCccEEEEccC-CccCC--
Q 017492 188 DLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVSNH-GARQL-- 260 (370)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~----~~a~~a~~aG~d~I~vs~~-gg~~~-- 260 (370)
..+ . .++.+..+.++++|+.+++||++|...+. +.++.+.++|+|+|+++|+ .|+..
T Consensus 133 -------------~~~-~--~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~ 196 (296)
T cd04740 133 -------------MAF-G--TDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDI 196 (296)
T ss_pred -------------ccc-c--CCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCccccccc
Confidence 000 0 24456778899999999999999986443 4477899999999999874 12111
Q ss_pred -------------CCcc----chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHH
Q 017492 261 -------------DYVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKG 323 (370)
Q Consensus 261 -------------~~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~ 323 (370)
..++ ..+..+.++++.+ ++|||++|||.+++|+.++|.+|||+|++||++++ ++
T Consensus 197 ~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p-- 267 (296)
T cd04740 197 ETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP-- 267 (296)
T ss_pred ccCceeecCCcceecCcccchHHHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch--
Confidence 0111 1356777887776 79999999999999999999999999999999986 33
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 324 VRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 324 v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
.+++.+.++|..+|...|+++++|+++
T Consensus 268 --~~~~~i~~~l~~~~~~~g~~~~~~~~g 294 (296)
T cd04740 268 --EAFKEIIEGLEAYLDEEGIKSIEELVG 294 (296)
T ss_pred --HHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 367899999999999999999999976
No 32
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.88 E-value=6.5e-21 Score=185.02 Aligned_cols=250 Identities=17% Similarity=0.179 Sum_probs=182.0
Q ss_pred EcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHH----H----Hhcc--CCCceEEEEeecCC
Q 017492 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVE----E----VAST--GPGIRFFQLYVYKD 134 (370)
Q Consensus 65 l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~e----e----i~~~--~~~~~~~Qly~~~d 134 (370)
+.+..++.|+++|||++.+ |.++++.|.++|..++++++.+.... + .... .+.+..+||+ +.+
T Consensus 3 i~~~~~~~~~~lAPM~g~t------d~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-g~~ 75 (321)
T PRK10415 3 IGQYQLRNRLIAAPMAGIT------DRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-GSD 75 (321)
T ss_pred cCCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-CCC
Confidence 4556788899999998875 88999999999999988887443211 0 1111 1246679997 678
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccH
Q 017492 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (370)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 214 (370)
++.+.+.++++++.|++.|.+|++||+. ++... +.+..+. .++++..
T Consensus 76 ~~~~~~aa~~~~~~g~d~IdlN~gCP~~---------------~v~~~----------------g~Gs~ll--~~p~~~~ 122 (321)
T PRK10415 76 PKEMADAARINVESGAQIIDINMGCPAK---------------KVNRK----------------LAGSALL--QYPDLVK 122 (321)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCHH---------------HHcCC----------------CcccHHh--cCHHHHH
Confidence 8888888888888999999999999973 00100 1112222 3677788
Q ss_pred HHHHHHHHhcCCcEEEEecC----C----HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 215 KDVKWLQTITKLPILVKGVL----T----AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~----~----~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
+.++.+++.+++||.+|... + .+.++.+.++|+|.|.+++....+...+.+.++.+.++++.+ ++|||++
T Consensus 123 eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~n 200 (321)
T PRK10415 123 SILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIAN 200 (321)
T ss_pred HHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEEe
Confidence 89999999999999999852 1 244678899999999994322224556777899999999887 8999999
Q ss_pred cCCCCHHHHHHHHH-hCCCEEEEcHHHH-----HHHH----hcC----HHHHHHHHHHHHHHHHHHHHHcCCC-Chhhhc
Q 017492 287 GGVRRGTDVFKALA-LGASGIFIGRPVV-----YSLA----AEG----EKGVRRVLEMLREEFELAMALSGCR-SLKEIT 351 (370)
Q Consensus 287 GGI~~~~dv~kala-lGAd~V~igr~~l-----~~~~----~~G----~~~v~~~l~~l~~el~~~m~~~G~~-~l~~l~ 351 (370)
|||++++|+.+++. .|||+||+||+++ +.-. ..| ....++.++.+.++++......|.. .+.++|
T Consensus 201 GgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 280 (321)
T PRK10415 201 GDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR 280 (321)
T ss_pred CCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 99999999999997 6999999999654 3211 112 1234566778888888888777753 466777
Q ss_pred cccee
Q 017492 352 RDHIV 356 (370)
Q Consensus 352 ~~~l~ 356 (370)
++.-+
T Consensus 281 k~~~~ 285 (321)
T PRK10415 281 KHVSW 285 (321)
T ss_pred HHHHH
Confidence 66433
No 33
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.87 E-value=1.8e-20 Score=184.56 Aligned_cols=251 Identities=20% Similarity=0.278 Sum_probs=175.9
Q ss_pred CCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CC---C----------------------
Q 017492 57 SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW---S---------------------- 110 (370)
Q Consensus 57 ~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~---~---------------------- 110 (370)
+..|++|+|+|.+++.||++|.-..+ ......+.+.++|...++. |. .
T Consensus 7 ~~~dLst~~~Gl~l~NP~i~ASgp~t------~~~e~~~~~~~~g~GAVV~KTi~~~~~~~~n~~pr~~~~~~g~~~~~~ 80 (385)
T PLN02495 7 SEPDLSVTVNGLKMPNPFVIGSGPPG------TNYTVMKRAFDEGWGGVIAKTVSLDASKVINVTPRYARLRAGANGSAK 80 (385)
T ss_pred CCCcceEEECCEEcCCCcEeCCccCC------CCHHHHHHHHhcCCeEEEeccccCCccccCCCCCeEEecCcccccccc
Confidence 56789999999999999999884432 2334555555567766662 11 0
Q ss_pred -C------C------CHH----HHh---ccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHh
Q 017492 111 -T------S------SVE----EVA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADI 169 (370)
Q Consensus 111 -~------~------~~e----ei~---~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~ 169 (370)
. . .++ ++. +..+ .+.+..|....+.+...++++++++.|++++.+|+.||...
T Consensus 81 ~n~iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~------ 154 (385)
T PLN02495 81 GRVIGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGM------ 154 (385)
T ss_pred cccccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC------
Confidence 0 0 122 222 1223 36677775446788888999999999999999999998631
Q ss_pred hhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH----HHHHHHHHc
Q 017492 170 KNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQA 245 (370)
Q Consensus 170 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~----~~a~~a~~a 245 (370)
+ .+. .+..+. .+++...+.++++++.+++||++|+..+. +.++.+.++
T Consensus 155 ------~----~r~----------------~g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~ 206 (385)
T PLN02495 155 ------P----ERK----------------MGAAVG--QDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKS 206 (385)
T ss_pred ------C----cCc----------------cchhhc--cCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHh
Confidence 0 000 000011 24455667789999988999999998654 347789999
Q ss_pred CccEEEEccCCc--cCC----------------CCc---cc----hHHHHHHHHHHcc----CCCcEEEecCCCCHHHHH
Q 017492 246 GAAGIIVSNHGA--RQL----------------DYV---PA----TIMALEEVVKATQ----GRIPVFLDGGVRRGTDVF 296 (370)
Q Consensus 246 G~d~I~vs~~gg--~~~----------------~~~---~~----~~~~l~~i~~~~~----~~ipvi~~GGI~~~~dv~ 296 (370)
|+|+|++.|+-. ... .+| ++ .+..+.++++.+. .++||++.|||.+++|++
T Consensus 207 Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~ 286 (385)
T PLN02495 207 GCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAA 286 (385)
T ss_pred CCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHH
Confidence 999999998522 111 011 11 2233445555542 259999999999999999
Q ss_pred HHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017492 297 KALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 355 (370)
Q Consensus 297 kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 355 (370)
++|.+||++|++|+++++ +|.. +++.+.+||+.+|...|+++++|+++..+
T Consensus 287 e~i~aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m~~~G~~si~e~~G~~~ 337 (385)
T PLN02495 287 EFILLGADTVQVCTGVMM----HGYP----LVKNLCAELQDFMKKHNFSSIEDFRGASL 337 (385)
T ss_pred HHHHhCCCceeEeeeeee----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHhCcCC
Confidence 999999999999999886 3664 77889999999999999999999997653
No 34
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=9.6e-21 Score=183.54 Aligned_cols=250 Identities=25% Similarity=0.294 Sum_probs=193.4
Q ss_pred EcCeeecCceeecccccccccCChhhHHHHHHHHHcCC-ceeecCCCCCC------HHHHh--ccC--CCceEEEEeecC
Q 017492 65 VLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTSS------VEEVA--STG--PGIRFFQLYVYK 133 (370)
Q Consensus 65 l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~-~~~~s~~~~~~------~eei~--~~~--~~~~~~Qly~~~ 133 (370)
+....+..++++|||.+.+ |..+++.+.++|. ..++|+|.+.. -+... ... ..|..+||+ +.
T Consensus 4 ~~~~~~~~~~~lAPM~gvt------d~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-gs 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVT------DLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLG-GS 76 (323)
T ss_pred cccccccCcEEEecCCCCc------cHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEec-CC
Confidence 4456678899999999875 8899999999999 88889884321 11111 111 267899998 67
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
|++.+.+..+.+++.|++.|.||++||+. ++.-. +.++.++ .+|++.
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~---------------~V~~~----------------g~Ga~Ll--~~p~lv 123 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSP---------------KVVKG----------------GAGAALL--KNPELL 123 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChH---------------HhcCC----------------Ccchhhc--CCHHHH
Confidence 88999999999999999999999999973 11111 1233343 477888
Q ss_pred HHHHHHHHHhcC-CcEEEEecC--------CHHHHHHHHHcCccEEEEccCCcc--CCCCccchHHHHHHHHHHccCCCc
Q 017492 214 WKDVKWLQTITK-LPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 214 ~~~i~~ir~~~~-~Pv~vK~v~--------~~~~a~~a~~aG~d~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+.++.+++.++ +||.||... ..+.++.+.++|++.++| ||.+ |...++..|+.+.++++.++. +|
T Consensus 124 ~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltV--HgRtr~~~y~~~ad~~~I~~vk~~~~~-ip 200 (323)
T COG0042 124 AEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTV--HGRTRAQGYLGPADWDYIKELKEAVPS-IP 200 (323)
T ss_pred HHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEE--ecccHHhcCCCccCHHHHHHHHHhCCC-Ce
Confidence 899999999994 999999862 134588899999999999 7665 456678899999999999843 99
Q ss_pred EEEecCCCCHHHHHHHHH-hCCCEEEEcHH-----HHHHH---HhcCH---HHHHHHHHHHHHHHHHHHHHcCCCChhhh
Q 017492 283 VFLDGGVRRGTDVFKALA-LGASGIFIGRP-----VVYSL---AAEGE---KGVRRVLEMLREEFELAMALSGCRSLKEI 350 (370)
Q Consensus 283 vi~~GGI~~~~dv~kala-lGAd~V~igr~-----~l~~~---~~~G~---~~v~~~l~~l~~el~~~m~~~G~~~l~~l 350 (370)
||+.|+|.+.+|+.+.|. .|+|+||+||. +++.. ...|. ....+.++.+..+++......|...+..+
T Consensus 201 vi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 280 (323)
T COG0042 201 VIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRL 280 (323)
T ss_pred EEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999999 67999999994 45432 12233 45677889999999999999986778888
Q ss_pred cccceee
Q 017492 351 TRDHIVT 357 (370)
Q Consensus 351 ~~~~l~~ 357 (370)
+++..+.
T Consensus 281 r~h~~~~ 287 (323)
T COG0042 281 RKHLGYY 287 (323)
T ss_pred HHHHHHH
Confidence 8775443
No 35
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.86 E-value=6.7e-20 Score=186.97 Aligned_cols=145 Identities=23% Similarity=0.355 Sum_probs=120.3
Q ss_pred CCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc------CCCCccchHHHHHHHHHHcc-C
Q 017492 208 IDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR------QLDYVPATIMALEEVVKATQ-G 279 (370)
Q Consensus 208 ~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~------~~~~~~~~~~~l~~i~~~~~-~ 279 (370)
++..+.|+.|++|++.+ ++||+++.+.+.++++.+.++|+|+|.++.+.|. ..+.|.|.+..+.++.+.+. .
T Consensus 264 G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~ 343 (495)
T PTZ00314 264 GNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARER 343 (495)
T ss_pred CCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhc
Confidence 34556788999999997 7999999999999999999999999999755442 24567888888888877653 3
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HHHh------c--------------
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA------E-------------- 319 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~~~~------~-------------- 319 (370)
++|||++|||+++.|++||+++||++||+|+.|.- +++. .
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~ 423 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIK 423 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhcccccccccccccccc
Confidence 69999999999999999999999999999998742 1110 0
Q ss_pred ---CH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhcc
Q 017492 320 ---GE-------KGVRRVLEMLREEFELAMALSGCRSLKEITR 352 (370)
Q Consensus 320 ---G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~ 352 (370)
|. ..+.+++.++..+|+..|.++|+.+|.||+.
T Consensus 424 ~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~ 466 (495)
T PTZ00314 424 VAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE 466 (495)
T ss_pred cCCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence 10 1288999999999999999999999999987
No 36
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.86 E-value=2.5e-20 Score=189.99 Aligned_cols=142 Identities=25% Similarity=0.317 Sum_probs=118.9
Q ss_pred ccHHHHHHHHHhcCC--cEEEEecCCHHHHHHHHHcCccEEEEccCCc-----c-CCCCccchHHHHHHHHHHc------
Q 017492 212 LSWKDVKWLQTITKL--PILVKGVLTAEDARIAVQAGAAGIIVSNHGA-----R-QLDYVPATIMALEEVVKAT------ 277 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~--Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg-----~-~~~~~~~~~~~l~~i~~~~------ 277 (370)
...+.|+++|+.++. +|+...+.+.++++.++++|||+|.|++|+| | +.+.++|++.++.++.+++
T Consensus 269 ~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~ 348 (502)
T PRK07107 269 WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEE 348 (502)
T ss_pred HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhh
Confidence 346789999999864 4555558999999999999999999999999 4 5778899999999998865
Q ss_pred -cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh------------------
Q 017492 278 -QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------ 318 (370)
Q Consensus 278 -~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~------------------ 318 (370)
+.++|||+||||+++.|++|||++|||+||+||+|- ++++.
T Consensus 349 ~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~ 428 (502)
T PRK07107 349 TGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLS 428 (502)
T ss_pred cCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccc
Confidence 224999999999999999999999999999999883 11111
Q ss_pred --cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 --EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 --~G~~-------~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.|.+ .+.+++.++..+||..|.++|+.++.||+..
T Consensus 429 ~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~~ 472 (502)
T PRK07107 429 FEEGVDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQK 472 (502)
T ss_pred cCCccEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHhC
Confidence 0111 2888999999999999999999999999865
No 37
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.86 E-value=3.5e-20 Score=179.98 Aligned_cols=246 Identities=22% Similarity=0.256 Sum_probs=175.8
Q ss_pred cCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCC-C-------HHHHhccCC--CceEEEEeecCCh
Q 017492 66 LGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-------VEEVASTGP--GIRFFQLYVYKDR 135 (370)
Q Consensus 66 ~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~-~-------~eei~~~~~--~~~~~Qly~~~d~ 135 (370)
.|..+..|+++|||.+.+ +.++++.|+++|..++.+++.+. + ..++....+ .|..+||. ..+.
T Consensus 2 ~~~~~~~~l~lAPm~~~t------~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~-g~~~ 74 (319)
T TIGR00737 2 GNIQLKSRVVLAPMAGVT------DSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLF-GSDP 74 (319)
T ss_pred CCccCCCCEEecCCCCCC------cHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEe-CCCH
Confidence 466788999999998875 88999999999998888877321 1 112222222 57889997 6788
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH
Q 017492 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (370)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (370)
+...+.+++++++|+++|.||+.||.. +|.+ . +.+..+. .++.+..+
T Consensus 75 ~~~~~aa~~~~~~G~d~IelN~gcP~~-~~~~--------------~----------------~~Gs~l~--~~~~~~~e 121 (319)
T TIGR00737 75 DTMAEAAKINEELGADIIDINMGCPVP-KITK--------------K----------------GAGSALL--RDPDLIGK 121 (319)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCCHH-HhcC--------------C----------------CccchHh--CCHHHHHH
Confidence 888899999999999999999999952 1110 0 0011111 35667788
Q ss_pred HHHHHHHhcCCcEEEEecC--------CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 216 DVKWLQTITKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~--------~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
+++++++.+++||.+|... ..+.++.+.++|+|+|++++.-..+...+++.++.+.++++.+ ++||+++|
T Consensus 122 i~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nG 199 (319)
T TIGR00737 122 IVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAV--RIPVIGNG 199 (319)
T ss_pred HHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcC--CCcEEEeC
Confidence 9999999999999999742 1355788899999999995321112234566788899998877 79999999
Q ss_pred CCCCHHHHHHHHH-hCCCEEEEcHHHHHH-----HH----hcCH----HHHHHHHHHHHHHHHHHHHHcCCC-Chhhhcc
Q 017492 288 GVRRGTDVFKALA-LGASGIFIGRPVVYS-----LA----AEGE----KGVRRVLEMLREEFELAMALSGCR-SLKEITR 352 (370)
Q Consensus 288 GI~~~~dv~kala-lGAd~V~igr~~l~~-----~~----~~G~----~~v~~~l~~l~~el~~~m~~~G~~-~l~~l~~ 352 (370)
||++++|+.+++. .|||+||+||+++.. -. ..|. ....+.++.+.+.++......|.. .+..+++
T Consensus 200 gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~ 279 (319)
T TIGR00737 200 DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARK 279 (319)
T ss_pred CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 9999999999995 789999999987632 11 0121 123455666777777766766632 3555554
Q ss_pred c
Q 017492 353 D 353 (370)
Q Consensus 353 ~ 353 (370)
+
T Consensus 280 ~ 280 (319)
T TIGR00737 280 H 280 (319)
T ss_pred H
Confidence 4
No 38
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.86 E-value=5.7e-20 Score=176.93 Aligned_cols=215 Identities=24% Similarity=0.290 Sum_probs=151.2
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCCC--------------------------
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS-------------------------- 112 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~~-------------------------- 112 (370)
|++|+++|.+|+.||++|+-... .+....+.+...|..+++. |....
T Consensus 1 ~l~~~~~Gl~l~nPi~~aag~~~------~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~pr~~~~~~~~~n~~g~~n 74 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAPPT------TSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFNN 74 (299)
T ss_pred CCceEECCEEcCCCCEeCCcCCC------CCHHHHHHHHHhCCCEEEeccccCcCCCCCCCCCeEEEeCCCchhcccccC
Confidence 67999999999999999983222 1333444444546654442 11100
Q ss_pred -------CHHH----Hh---ccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC
Q 017492 113 -------SVEE----VA---STGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP 177 (370)
Q Consensus 113 -------~~ee----i~---~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~ 177 (370)
.++. +. ...+ .+.+.|++...+.+...+.++++++.|++++.+|+.||..-.
T Consensus 75 ~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~------------- 141 (299)
T cd02940 75 IELISEKPLEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMP------------- 141 (299)
T ss_pred CccccccCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCC-------------
Confidence 0221 21 1122 467899875437888888999998899999999999997310
Q ss_pred ccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH----HHHHHHHHcCccEEEEc
Q 017492 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 253 (370)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~----~~a~~a~~aG~d~I~vs 253 (370)
.+. .+..+. .+++...+.++++++.+++||++|+..+. +.++.+.++|+|+|+++
T Consensus 142 ---~~~----------------~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 142 ---ERG----------------MGAAVG--QDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred ---CCC----------------Cchhhc--cCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 000 001111 24555677899999999999999987543 56788999999999988
Q ss_pred cCCcc---------------------CCCCccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 254 NHGAR---------------------QLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 254 ~~gg~---------------------~~~~~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
|+... +..+|++ +++.+.++++.+.+++|||++|||++++|+.+++.+|||+||+
T Consensus 201 Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 201 NTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred cccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 75311 1112332 4788889988875579999999999999999999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
||++++
T Consensus 281 ~ta~~~ 286 (299)
T cd02940 281 CTAVMN 286 (299)
T ss_pred ceeecc
Confidence 999886
No 39
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.85 E-value=9.8e-20 Score=175.82 Aligned_cols=200 Identities=20% Similarity=0.220 Sum_probs=151.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcC-CceeecCCCCC--------CHHHHhc------cC--CCceEEEEeecCC
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAG-TIMTLSSWSTS--------SVEEVAS------TG--PGIRFFQLYVYKD 134 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G-~~~~~s~~~~~--------~~eei~~------~~--~~~~~~Qly~~~d 134 (370)
+|+++|||+|.+ |.++++.|.+.| ...++++|.+. ....+.+ .. +.|..+||+ ..+
T Consensus 1 ~~~~lAPMag~t------d~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-g~~ 73 (312)
T PRK10550 1 MRVLLAPMEGVL------DSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-GQY 73 (312)
T ss_pred CCeEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-cCC
Confidence 589999999886 889999999999 78888888432 1111111 11 257899998 678
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccH
Q 017492 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSW 214 (370)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 214 (370)
++.+.+.++++++.|++.|.||++||+. ++... +.++.+. .++++..
T Consensus 74 p~~~~~aA~~~~~~g~d~IdiN~GCP~~---------------~v~~~----------------g~Gs~Ll--~~~~~~~ 120 (312)
T PRK10550 74 PQWLAENAARAVELGSWGVDLNCGCPSK---------------TVNGS----------------GGGATLL--KDPELIY 120 (312)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCch---------------HHhcC----------------CCchHhh--cCHHHHH
Confidence 8888889999999999999999999973 01100 1122222 3667788
Q ss_pred HHHHHHHHhc--CCcEEEEecCC-------HHHHHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEE
Q 017492 215 KDVKWLQTIT--KLPILVKGVLT-------AEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 215 ~~i~~ir~~~--~~Pv~vK~v~~-------~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi 284 (370)
++++.+++.+ ++||.+|.... .+.++.+.++|+|.|.|++.-..+...+++ .++.+.++++.+ ++||+
T Consensus 121 eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~--~iPVi 198 (312)
T PRK10550 121 QGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRL--TIPVI 198 (312)
T ss_pred HHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhc--CCcEE
Confidence 8999999988 49999997531 244688889999999994322224445554 788999999887 89999
Q ss_pred EecCCCCHHHHHHHHH-hCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALA-LGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kala-lGAd~V~igr~~l 313 (370)
++|||.+++|+.+++. .|||+||+||+++
T Consensus 199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 199 ANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred EeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 9999999999999997 6899999999554
No 40
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.85 E-value=2.1e-19 Score=171.52 Aligned_cols=176 Identities=26% Similarity=0.396 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 134 DRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
..+...+.+...++.+ ++++.+|+.||.. |. ...++ .+++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt-------------~g-----------------------~~~l~--~~~e~ 148 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNT-------------PG-----------------------GRALG--QDPEL 148 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCC-------------CC-----------------------hhhhc--cCHHH
Confidence 3555666777777777 7888888888752 10 00011 24455
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHH----HHHHHHcCccEEEEccCCc--c-----C-------CCC---cc----chH
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAED----ARIAVQAGAAGIIVSNHGA--R-----Q-------LDY---VP----ATI 267 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~----a~~a~~aG~d~I~vs~~gg--~-----~-------~~~---~~----~~~ 267 (370)
..+.++++++.+++||++|+..+.++ |+.+.++|+|+|++.|+-. . + ..+ |+ -++
T Consensus 149 l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al 228 (310)
T COG0167 149 LEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIAL 228 (310)
T ss_pred HHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHH
Confidence 56678899999999999999876544 7889999999999998522 1 0 012 22 255
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCCh
Q 017492 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSL 347 (370)
Q Consensus 268 ~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l 347 (370)
..+.++.+.++.++|||+.|||.|++|+++.+.+||++|++|+++++ +|+. +++.+.++|.++|...|++|+
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp~----i~~~I~~~l~~~l~~~g~~si 300 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGPG----IVKEIIKGLARWLEEKGFESI 300 (310)
T ss_pred HHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCch----HHHHHHHHHHHHHHHcCCCCH
Confidence 67888888886789999999999999999999999999999999987 3663 788999999999999999999
Q ss_pred hhhcccce
Q 017492 348 KEITRDHI 355 (370)
Q Consensus 348 ~~l~~~~l 355 (370)
+|+++..+
T Consensus 301 ~d~iG~~~ 308 (310)
T COG0167 301 QDIIGSAL 308 (310)
T ss_pred HHHhchhc
Confidence 99987643
No 41
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.85 E-value=1.1e-19 Score=175.82 Aligned_cols=238 Identities=18% Similarity=0.216 Sum_probs=166.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCC-ceeecCCCCC------CHHHHhccCC--CceEEEEeecCChHHHHHHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~-~~~~s~~~~~------~~eei~~~~~--~~~~~Qly~~~d~~~~~~~l~ 143 (370)
|+++|||.+.+ |.++++.|.++|. .++.++|.+. ...+.....+ .|..+||+ ..+.+...+.++
T Consensus 2 ~~~lAPM~g~T------d~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWT------DRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLG-GSDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCc------CHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEc-cCCHHHHHHHHH
Confidence 78999999886 8899999999998 7888888432 1222332222 67899998 678888889999
Q ss_pred HHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHh
Q 017492 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (370)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~ 223 (370)
.+++.|++.|.||++||+.- +... +.+..+. .++++..++++.+++.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~---------------v~~~----------------g~Gs~Ll--~~p~~~~~iv~av~~~ 121 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDR---------------VQNG----------------NFGACLM--GNADLVADCVKAMQEA 121 (318)
T ss_pred HHHhCCCCEEEEECCCCHHH---------------hCCC----------------CeehHhh--cCHHHHHHHHHHHHHH
Confidence 99999999999999999730 0000 1112222 3667788899999999
Q ss_pred cCCcEEEEecCC------H----HHHHHHHHcCccEEEEccCCccC---CC-------CccchHHHHHHHHHHccCCCcE
Q 017492 224 TKLPILVKGVLT------A----EDARIAVQAGAAGIIVSNHGARQ---LD-------YVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 224 ~~~Pv~vK~v~~------~----~~a~~a~~aG~d~I~vs~~gg~~---~~-------~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+++||.+|.... . +.++.+.++|+|.|.| ||++. .. ..+..++.+.++++.+ .++||
T Consensus 122 ~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itv--HgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~-~~ipV 198 (318)
T TIGR00742 122 VNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIV--HARKAWLSGLSPKENREIPPLRYERVYQLKKDF-PHLTI 198 (318)
T ss_pred hCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEE--eCCchhhcCCCccccccCCchhHHHHHHHHHhC-CCCcE
Confidence 999999998531 1 2367888999999999 66542 11 1233567787887765 26999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHH-----HHHHh----cC---HHHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVV-----YSLAA----EG---EKGVRRVLEMLREEFELAMALSGCRSLKEIT 351 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l-----~~~~~----~G---~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~ 351 (370)
|++|||++.+|+.+.+. |||+||+||+++ +.-.. +| .....+.++.+.+.++..... ...+.+++
T Consensus 199 i~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~r 275 (318)
T TIGR00742 199 EINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ--GLSLNHIT 275 (318)
T ss_pred EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc--cchHHHHH
Confidence 99999999999999986 999999999554 43211 11 112334555565666554332 23566666
Q ss_pred cccee
Q 017492 352 RDHIV 356 (370)
Q Consensus 352 ~~~l~ 356 (370)
++..+
T Consensus 276 k~~~~ 280 (318)
T TIGR00742 276 RHLLG 280 (318)
T ss_pred HHHHH
Confidence 65433
No 42
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.84 E-value=1.3e-19 Score=183.57 Aligned_cols=143 Identities=29% Similarity=0.404 Sum_probs=118.5
Q ss_pred CCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc-----C-CCCccchHHHHHHHHHHcc-CC
Q 017492 209 DRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----Q-LDYVPATIMALEEVVKATQ-GR 280 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~-----~-~~~~~~~~~~l~~i~~~~~-~~ 280 (370)
+....++.|+++++.+ ++||+++.+.+.++++.+.++|+|+|.|+.+.|+ . ..++.|++.++.++.+.+. .+
T Consensus 248 ~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~ 327 (450)
T TIGR01302 248 HSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSG 327 (450)
T ss_pred cHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcC
Confidence 3445678899999996 8999999999999999999999999999866552 1 2467888889888877653 37
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh----------------------
Q 017492 281 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA---------------------- 318 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~---------------------- 318 (370)
+|||++|||+++.|++|||++||++||+|+.|. ++++.
T Consensus 328 vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg~~~~~~g~~~k~yrgm~s~~a~~~~~~~ry~~~~~~~~~~ 407 (450)
T TIGR01302 328 IPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYEIINGRRYKQYRGMGSLGAMTKGSSDRYLQDENKTKKF 407 (450)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccc
Confidence 999999999999999999999999999999883 11110
Q ss_pred --cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhc
Q 017492 319 --EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEIT 351 (370)
Q Consensus 319 --~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~ 351 (370)
.|. ..|.+++.++..+|+..|.++|+.++.||+
T Consensus 408 ~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~ 449 (450)
T TIGR01302 408 VPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELR 449 (450)
T ss_pred cCCceEEcccccCcHHHHHHHHHHHHHHhhhccCcCcHHHHh
Confidence 111 138889999999999999999999999986
No 43
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.84 E-value=2.9e-19 Score=179.80 Aligned_cols=248 Identities=21% Similarity=0.266 Sum_probs=173.8
Q ss_pred CccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC----C----------------------
Q 017492 59 IDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS----T---------------------- 111 (370)
Q Consensus 59 vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~----~---------------------- 111 (370)
.|++|+|+|.+|+.||++|+-... .. ...+.+.. +.|..+++. |.. +
T Consensus 2 ~~L~~~~~Gl~l~nPv~~aag~~~---~~--~~~~~~~~-~~g~Gavv~kti~~~~gn~~~pr~~~~~~~~~~~~g~~n~ 75 (420)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAPPT---NK--YYNVARAF-EAGWGGVVWKTLGPPIVNVSSPRFGALVKEDRRFIGFNNI 75 (420)
T ss_pred CCceEEECCEecCCCcEeCCcCCC---CC--HHHHHHHH-HhCCCEEEEeecCCCCCCCCCCeEEEecCCCcccccccCc
Confidence 478999999999999999973221 11 22333333 345543331 110 0
Q ss_pred -----CCHH----HH---hccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCC-cchhHHhhhhcCCCC
Q 017492 112 -----SSVE----EV---ASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRL-GRREADIKNRFTLPP 177 (370)
Q Consensus 112 -----~~~e----ei---~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~-g~r~~d~~~~~~~p~ 177 (370)
..++ .+ ....+ .+.++||+...+.+...+.++.+++.|+++|.+|+.||.. +.|
T Consensus 76 ~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~------------ 143 (420)
T PRK08318 76 ELITDRPLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSER------------ 143 (420)
T ss_pred ccccccCHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCcccc------------
Confidence 0112 11 11222 4568998754367888889999999999999999999962 100
Q ss_pred ccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH----HHHHHHHHcCccEEEEc
Q 017492 178 FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA----EDARIAVQAGAAGIIVS 253 (370)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~----~~a~~a~~aG~d~I~vs 253 (370)
. .+..+. .+++...+.++++++.+++||++|+..+. +.++.+.++|+|+|++.
T Consensus 144 -----~----------------~g~~~~--~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~ 200 (420)
T PRK08318 144 -----G----------------MGSAVG--QVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVSLI 200 (420)
T ss_pred -----C----------------Cccccc--CCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEe
Confidence 0 000011 24555677899999989999999997542 55788999999999976
Q ss_pred cCC-c-----------------c---CCCCccc----hHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 017492 254 NHG-A-----------------R---QLDYVPA----TIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 254 ~~g-g-----------------~---~~~~~~~----~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalalGAd~V~ 307 (370)
|+- + + +..+|++ .++.+.++++.++ .++|||++|||.+++|+.++|.+|||+||
T Consensus 201 Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 201 NTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred cccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 641 1 1 1112333 4677888877653 27999999999999999999999999999
Q ss_pred EcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccce
Q 017492 308 IGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHI 355 (370)
Q Consensus 308 igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l 355 (370)
+||++++ .|+. ++..+.++|+.+|...|+.++.++....+
T Consensus 281 i~ta~~~----~gp~----ii~~I~~~L~~~l~~~g~~si~e~iG~~~ 320 (420)
T PRK08318 281 VCTAAMQ----YGFR----IVEDMISGLSHYMDEKGFASLEDMVGLAV 320 (420)
T ss_pred eeeeecc----CCch----hHHHHHHHHHHHHHHcCcchHHHHhcccc
Confidence 9999886 3553 67889999999999999999999986543
No 44
>PLN02826 dihydroorotate dehydrogenase
Probab=99.84 E-value=1.7e-18 Score=172.12 Aligned_cols=123 Identities=30% Similarity=0.476 Sum_probs=100.1
Q ss_pred cCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCC-cc----------CCCC---ccc----hHHHHHHHHHHccC
Q 017492 224 TKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHG-AR----------QLDY---VPA----TIMALEEVVKATQG 279 (370)
Q Consensus 224 ~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~g-g~----------~~~~---~~~----~~~~l~~i~~~~~~ 279 (370)
.++||++|+. .+.++ ++.+.++|+|+|+++|+- ++ +..+ |++ +++.+.++++.+.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999995 44444 788999999999999841 11 1112 222 56778888888767
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
++|||++|||.+++|++++|.+||++|+++|++++ +|+. ++..+.+||.++|...|+++++|+.+..
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp~----~i~~I~~eL~~~l~~~G~~si~e~iG~~ 407 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGPA----LIPRIKAELAACLERDGFKSIQEAVGAD 407 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCHH----HHHHHHHHHHHHHHHcCCCCHHHHhCcC
Confidence 89999999999999999999999999999999987 3553 7788999999999999999999998743
No 45
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=99.84 E-value=9.9e-20 Score=177.64 Aligned_cols=255 Identities=24% Similarity=0.271 Sum_probs=150.4
Q ss_pred eeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHH
Q 017492 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (370)
Q Consensus 68 ~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~ 147 (370)
.+++.||+++.|+++.+. ++.-.++|++++..|+.+..++.. .+.++..... ...++|+- ........+.++
T Consensus 62 ~~l~~p~~is~MS~GaLS-~~a~~Ala~ga~~~G~~~ntGEGg-~~~~~~~~~~-~~~I~Q~~-sg~fGv~~~~l~---- 133 (368)
T PF01645_consen 62 LELSIPFMISAMSYGALS-EEAKEALAKGANMAGTASNTGEGG-ELPEERKAAK-DLRIKQIA-SGRFGVRPEYLK---- 133 (368)
T ss_dssp HHHHTTEEEEEB-CTTC--HHHHHHHHHHHHHCT-EEEETTT----GGGCSB-T-TSSEEEE--TT-TT--HHHHC----
T ss_pred hhheeeeecccCChhhcC-HHHHHHHHHHHHHhCceEecCCCC-CCHHHhcccC-CceEEEcC-CCCCCCCHHHhc----
Confidence 457899999999999654 557789999999999998887763 4455544332 22378953 444555555553
Q ss_pred cCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhcCCCCc-cH----HHHHHHH
Q 017492 148 AGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SW----KDVKWLQ 221 (370)
Q Consensus 148 ~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~----~~i~~ir 221 (370)
.++.|.|-+.--.. .. .+-.+|. +++. .+..+ .........+++..++++ +. +.|+++|
T Consensus 134 -~a~~iEIKigQGAK---pG---~GG~Lp~~KV~~-~ia~~-------R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr 198 (368)
T PF01645_consen 134 -QADMIEIKIGQGAK---PG---EGGHLPGEKVTE-EIARI-------RGVPPGVDLISPPPHHDIYSIEDLAQLIEELR 198 (368)
T ss_dssp -C-SEEEEE---TTS---TT---T--EE-GGG--H-HHHHH-------HTS-TT--EE--SS-TT-SSHHHHHHHHHHHH
T ss_pred -CCCeEEEEEecCcc---cc---CcceechhhchH-HHHHH-------hCCCCCCccccCCCCCCcCCHHHHHHHHHHHH
Confidence 45667766542210 00 0001111 0100 00000 000000112222233333 33 3588999
Q ss_pred Hhc-CCcEEEEecC--CHHHH-HHHHHcCccEEEEccCC-ccC-------CCCccchHHHHHHHHHHc-----cCCCcEE
Q 017492 222 TIT-KLPILVKGVL--TAEDA-RIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVF 284 (370)
Q Consensus 222 ~~~-~~Pv~vK~v~--~~~~a-~~a~~aG~d~I~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvi 284 (370)
+.. +.||.+|.+. ..++. ..+.++|+|.|+|++++ |+. .+.|.|....|.++.+.+ ++++.++
T Consensus 199 ~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li 278 (368)
T PF01645_consen 199 ELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLI 278 (368)
T ss_dssp HH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEE
T ss_pred hhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEE
Confidence 988 8999999974 33443 34889999999999874 442 247888888898888775 4689999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc-----------------------------CHHHHHHHHHHHHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREEF 335 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~-----------------------------G~~~v~~~l~~l~~el 335 (370)
++||++++.|++|+++||||+|.+||++|+++.|. +.+.|.+++..+.+||
T Consensus 279 ~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el 358 (368)
T PF01645_consen 279 ASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEEL 358 (368)
T ss_dssp EESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHH
T ss_pred EeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988762 3567999999999999
Q ss_pred HHHHHHcCCC
Q 017492 336 ELAMALSGCR 345 (370)
Q Consensus 336 ~~~m~~~G~~ 345 (370)
+..|+.+|.+
T Consensus 359 ~~~~~a~G~~ 368 (368)
T PF01645_consen 359 REILAALGKR 368 (368)
T ss_dssp HHHHHHHT-S
T ss_pred HHHHHHhCCC
Confidence 9999999964
No 46
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.83 E-value=1.6e-19 Score=184.62 Aligned_cols=141 Identities=27% Similarity=0.412 Sum_probs=117.7
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccC-----CccCC-CCccchHHHHHHHHHHcc-CCCcEE
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-----GARQL-DYVPATIMALEEVVKATQ-GRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~-----gg~~~-~~~~~~~~~l~~i~~~~~-~~ipvi 284 (370)
.++.++++++++ ++||+++.+.+.++++.+.++|+|+|.++.. ++++. .++.|+++++.++.+.+. .++|||
T Consensus 256 vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi 335 (486)
T PRK05567 256 VLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI 335 (486)
T ss_pred HHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE
Confidence 566799999998 8999999999999999999999999999543 33433 467899999999988653 379999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHHHh------------------------cC
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSLAA------------------------EG 320 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~~~------------------------~G 320 (370)
++|||+++.|++|||++|||+||+|++|- ++++. .|
T Consensus 336 adGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~~~~g 415 (486)
T PRK05567 336 ADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKLVPEG 415 (486)
T ss_pred EcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhcccccccccccccccccCCCc
Confidence 99999999999999999999999999872 11111 01
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 321 E-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 321 ~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
. ..+.+++.++..+|+..|.++|+++++||+..
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 455 (486)
T PRK05567 416 IEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREK 455 (486)
T ss_pred eEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHhc
Confidence 0 12889999999999999999999999999844
No 47
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.83 E-value=2.8e-19 Score=182.56 Aligned_cols=143 Identities=21% Similarity=0.324 Sum_probs=116.2
Q ss_pred CCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCC--c---cchHHHHHHHHHHcc
Q 017492 209 DRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDY--V---PATIMALEEVVKATQ 278 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~--~---~~~~~~l~~i~~~~~ 278 (370)
+....|+.+++||+.+ +.+|+++.+.+.++|+.+.++|+|+|.|++|.|+ +... + .+++..++++++..
T Consensus 272 ~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~- 350 (505)
T PLN02274 272 DSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQH- 350 (505)
T ss_pred CcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhc-
Confidence 3445789999999998 5899999999999999999999999999988763 2221 2 23555677776654
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH--------------------HHHh--------------------
Q 017492 279 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY--------------------SLAA-------------------- 318 (370)
Q Consensus 279 ~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~--------------------~~~~-------------------- 318 (370)
++|||++|||+++.|++|||++||++||+|+.|.- +++.
T Consensus 351 -~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~ 429 (505)
T PLN02274 351 -GVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLK 429 (505)
T ss_pred -CCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccc
Confidence 79999999999999999999999999999998842 1110
Q ss_pred --cCHH-------HHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 --EGEK-------GVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 --~G~~-------~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+|.+ .+.+++.+|..+||..|.++|+.++.||+..
T Consensus 430 v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~ 473 (505)
T PLN02274 430 IAQGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL 473 (505)
T ss_pred cCCceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence 0111 2888999999999999999999999999876
No 48
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.83 E-value=4.1e-19 Score=179.94 Aligned_cols=146 Identities=25% Similarity=0.317 Sum_probs=120.0
Q ss_pred CCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------CCCccchHHHHHHHHHHcc-CC
Q 017492 209 DRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------LDYVPATIMALEEVVKATQ-GR 280 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------~~~~~~~~~~l~~i~~~~~-~~ 280 (370)
++....+.+++|++.+ ++||++..+.+.+.++.+.++|+|+|.|+..+|+. ..+|.++...+.++.+... ..
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~ 328 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLG 328 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcC
Confidence 3444567899999987 79999988999999999999999999998887752 2457888888887765542 27
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH---------------------HHHHh---------------------
Q 017492 281 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVV---------------------YSLAA--------------------- 318 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l---------------------~~~~~--------------------- 318 (370)
+|||++|||+++.|++|||++||++||+|+.|- ++++.
T Consensus 329 ~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~ 408 (475)
T TIGR01303 329 GHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKAL 408 (475)
T ss_pred CcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhcccc
Confidence 999999999999999999999999999999872 11110
Q ss_pred --cCHHH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc
Q 017492 319 --EGEKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 319 --~G~~~-----------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~ 354 (370)
+|.+| +.+++.++..+|+..|.++|+++++||+..-
T Consensus 409 v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~~~ 457 (475)
T TIGR01303 409 FEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHERA 457 (475)
T ss_pred ccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHhCC
Confidence 23222 7789999999999999999999999999763
No 49
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.83 E-value=1.4e-18 Score=167.97 Aligned_cols=241 Identities=18% Similarity=0.181 Sum_probs=165.6
Q ss_pred ccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCC--------------------------CC
Q 017492 60 DMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWS--------------------------TS 112 (370)
Q Consensus 60 d~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~--------------------------~~ 112 (370)
|++|+++|.+|+.||++|.-... .+....+.+.+.|..+++. |.. +.
T Consensus 1 dL~~~~~Gl~l~NPv~~AsG~~~------~~~e~~~~~~~~g~Gavv~ktit~~p~~gn~~pr~~~~~~~~~N~~Gl~n~ 74 (310)
T PRK02506 1 STSTQIAGFKFDNCLMNAAGVYC------MTKEELEEVEASAAGAFVTKSATLEPRPGNPEPRYADTPLGSINSMGLPNL 74 (310)
T ss_pred CCceEECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCcEEEeCccCCCCCCCCCCCeEEECcchhhccCCCCCc
Confidence 67999999999999999984332 1334445577788776662 221 01
Q ss_pred CHH----HHhc---cCC-CceEEEEeecCChHHHHHHHHHHHHcC-CcEEEEecCCCCCcchhHHhhhhcCCCCcccccc
Q 017492 113 SVE----EVAS---TGP-GIRFFQLYVYKDRNVVAQLVRRAERAG-FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKN 183 (370)
Q Consensus 113 ~~e----ei~~---~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G-~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~ 183 (370)
.++ ++.+ ..+ .+.+.++. ..+.+...+.+++++++| ++++.+|+.||.... . ..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~-G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~-~---------------~~ 137 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVV-GLSPEETHTILKKIQASDFNGLVELNLSCPNVPG-K---------------PQ 137 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEE-eCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCC-c---------------cc
Confidence 122 2221 111 45666765 445666678888888888 899999999985210 0 00
Q ss_pred ccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH---HHHHHH---HHcCccEEEEccCC-
Q 017492 184 FQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA---EDARIA---VQAGAAGIIVSNHG- 256 (370)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~---~~a~~a---~~aG~d~I~vs~~g- 256 (370)
+ ..|++...+.++++++.+++||++|+..+. +.++.+ .+.|+++|...|.-
T Consensus 138 --------------------~--g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~ 195 (310)
T PRK02506 138 --------------------I--AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIG 195 (310)
T ss_pred --------------------c--ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCC
Confidence 0 013334567899999999999999997432 223333 35677877776631
Q ss_pred -cc--------C-C-----CC---cc----chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 257 -AR--------Q-L-----DY---VP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 257 -g~--------~-~-----~~---~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+. . . .+ |+ -.+..+.++++.+..++|||++|||.+++|+++++.+||++||+|+++++
T Consensus 196 ~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~ 275 (310)
T PRK02506 196 NGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK 275 (310)
T ss_pred CceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH
Confidence 11 0 0 11 12 13456667777665579999999999999999999999999999999987
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 315 SLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
+|+. ++..+.+||+.+|...|+++++|+++.
T Consensus 276 ----~gp~----~~~~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 276 ----EGPA----VFERLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred ----hChH----HHHHHHHHHHHHHHHhCCCCHHHHhCh
Confidence 2453 778899999999999999999999873
No 50
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.82 E-value=3e-18 Score=167.92 Aligned_cols=232 Identities=16% Similarity=0.171 Sum_probs=157.2
Q ss_pred CCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCCC----------------------
Q 017492 56 VSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWSTS---------------------- 112 (370)
Q Consensus 56 ~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~~---------------------- 112 (370)
..+++++|+++|.+++.||++|. +.. .+....+.+.+.|..+++. |....
T Consensus 44 ~~~~~L~~~~~Gl~l~nPi~~As-G~~------~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~ 116 (344)
T PRK05286 44 YTDPRLPVTVMGLTFPNPVGLAA-GFD------KNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINR 116 (344)
T ss_pred CCCCCCceEECCEECCCCCEECC-CCC------CChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccC
Confidence 45778999999999999998876 221 2345566688888877662 22110
Q ss_pred ------CHH----HHhcc-CCCceEEEEeecC------ChHHHHHHHHHHHHcCCcEEEEecCCCCCc-chhHHhhhhcC
Q 017492 113 ------SVE----EVAST-GPGIRFFQLYVYK------DRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFT 174 (370)
Q Consensus 113 ------~~e----ei~~~-~~~~~~~Qly~~~------d~~~~~~~l~ra~~~G~~ai~itvd~p~~g-~r~~d~~~~~~ 174 (370)
.++ ++.+. ..-|.++++.... ..+...+.++++.+ +++++.+|+.||... .|.
T Consensus 117 ~gl~n~g~~~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~-------- 187 (344)
T PRK05286 117 MGFNNDGADALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRD-------- 187 (344)
T ss_pred CCCCCHhHHHHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCccc--------
Confidence 011 22221 1134667764321 23444445555443 488888888888631 000
Q ss_pred CCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcC-----CcEEEEecCC------HHHHHHHH
Q 017492 175 LPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK-----LPILVKGVLT------AEDARIAV 243 (370)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~-----~Pv~vK~v~~------~~~a~~a~ 243 (370)
..++....+.++++|+.++ +||++|+..+ .+.++.+.
T Consensus 188 --------------------------------~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~ 235 (344)
T PRK05286 188 --------------------------------LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLAL 235 (344)
T ss_pred --------------------------------ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHH
Confidence 0122334578899999886 9999999743 23468888
Q ss_pred HcCccEEEEccCCc-------------cCCCCccc----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 017492 244 QAGAAGIIVSNHGA-------------RQLDYVPA----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 244 ~aG~d~I~vs~~gg-------------~~~~~~~~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V 306 (370)
++|+|+|+++|.-. ++.-+|++ .++.+.++++.+++++||+++|||++++|+.+++.+|||+|
T Consensus 236 ~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V 315 (344)
T PRK05286 236 EHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLV 315 (344)
T ss_pred HhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHH
Confidence 99999999988420 01112222 45677788777766799999999999999999999999999
Q ss_pred EEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC
Q 017492 307 FIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSG 343 (370)
Q Consensus 307 ~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G 343 (370)
++||++++. |+. +++.++++|+.+|...|
T Consensus 316 ~v~~~~~~~----gP~----~~~~i~~~L~~~l~~~g 344 (344)
T PRK05286 316 QIYSGLIYE----GPG----LVKEIVRGLARLLRRDG 344 (344)
T ss_pred HHHHHHHHh----Cch----HHHHHHHHHHHHHHhcC
Confidence 999999862 443 67889999999998765
No 51
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.79 E-value=9.2e-19 Score=169.17 Aligned_cols=241 Identities=25% Similarity=0.316 Sum_probs=155.5
Q ss_pred eecccccccccCChhhHHHHHHHHHcCCc-eeecCCCCC-----C---HHHHhccCC--CceEEEEeecCChHHHHHHHH
Q 017492 75 MIAPTAMQKMAHPEGEYATARAASAAGTI-MTLSSWSTS-----S---VEEVASTGP--GIRFFQLYVYKDRNVVAQLVR 143 (370)
Q Consensus 75 ~iapm~~~~~~~~~~e~~la~aa~~~G~~-~~~s~~~~~-----~---~eei~~~~~--~~~~~Qly~~~d~~~~~~~l~ 143 (370)
++|||.+.+ |.++++.+.++|.. .+++++.+. . ..+.....+ .|..+||. .+|++.+.+.++
T Consensus 1 ~LAPM~g~t------d~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-g~~~~~~~~aa~ 73 (309)
T PF01207_consen 1 ILAPMAGVT------DLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-GNDPEDLAEAAE 73 (309)
T ss_dssp -E---TTTS------SHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE--S-HHHHHHHHH
T ss_pred CccCCCCCc------hHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-eccHHHHHHHHH
Confidence 589998875 88999999999999 888887431 1 111111222 57999998 678898888888
Q ss_pred HHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHh
Q 017492 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (370)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~ 223 (370)
.+.+.|++.|+||++||.. ++..+ +.+..+. .+++...+.++.+++.
T Consensus 74 ~~~~~~~~~IDlN~GCP~~---------------~v~~~----------------g~Ga~Ll--~~p~~~~~iv~~~~~~ 120 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAP---------------KVTKG----------------GAGAALL--KDPDLLAEIVKAVRKA 120 (309)
T ss_dssp HHCCTT-SEEEEEE---SH---------------HHHHC----------------T-GGGGG--C-HHHHHHHHHHHHHH
T ss_pred hhhccCCcEEeccCCCCHH---------------HHhcC----------------CcChhhh--cChHHhhHHHHhhhcc
Confidence 8888999999999999973 01100 1223333 3666777889999999
Q ss_pred cCCcEEEEecC--------CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 017492 224 TKLPILVKGVL--------TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (370)
Q Consensus 224 ~~~Pv~vK~v~--------~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv 295 (370)
+++||.+|... +.+.++.+.++|++.|+|.+.-..|...+++.|+.+.++++.+ ++|||+.|||.+.+|+
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~d~ 198 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPEDA 198 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHHHH
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHHHH
Confidence 99999999852 1345788999999999994433346667799999999999988 6999999999999999
Q ss_pred HHHHH-hCCCEEEEcHH-----HHHHH---HhcCH----HHHHHHHHHHHHHHHHHHHHcC-CCChhhhcccceee
Q 017492 296 FKALA-LGASGIFIGRP-----VVYSL---AAEGE----KGVRRVLEMLREEFELAMALSG-CRSLKEITRDHIVT 357 (370)
Q Consensus 296 ~kala-lGAd~V~igr~-----~l~~~---~~~G~----~~v~~~l~~l~~el~~~m~~~G-~~~l~~l~~~~l~~ 357 (370)
.+.+. .|+|+||+||. +++.. ...|. ..+.+.++.+.+++.......| ...+..++++..+.
T Consensus 199 ~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y 274 (309)
T PF01207_consen 199 ERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWY 274 (309)
T ss_dssp HHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCC
T ss_pred HHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 99998 49999999994 45531 11111 1145667777777777777665 34677777765544
No 52
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.78 E-value=1.4e-17 Score=162.54 Aligned_cols=243 Identities=20% Similarity=0.209 Sum_probs=168.0
Q ss_pred eecCceeecccccccccCChhhHHHHHHHHHcCC-ceeecCCCCC------CHHHHhccCC--CceEEEEeecCChHHHH
Q 017492 69 KISMPIMIAPTAMQKMAHPEGEYATARAASAAGT-IMTLSSWSTS------SVEEVASTGP--GIRFFQLYVYKDRNVVA 139 (370)
Q Consensus 69 ~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~-~~~~s~~~~~------~~eei~~~~~--~~~~~Qly~~~d~~~~~ 139 (370)
....|+++|||.+.+ |.++++.|.++|. ..+.++|.+. ...+.....+ .|..+||+ ..+++...
T Consensus 8 ~~~~~~~lAPM~g~t------d~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~-g~~p~~~~ 80 (333)
T PRK11815 8 LPSRRFSVAPMMDWT------DRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLG-GSDPADLA 80 (333)
T ss_pred CCCCCEEEeCCCCCc------CHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEe-CCCHHHHH
Confidence 346799999999885 8899999999997 6888887321 1122222222 68999998 67888888
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHH
Q 017492 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 219 (370)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 219 (370)
+.+++++++|++.|.||++||..-.|. . +.+..+. .++++..+.++.
T Consensus 81 ~aA~~~~~~g~d~IdlN~gCP~~~v~~---------------~----------------~~Gs~L~--~~p~~~~eiv~a 127 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSDRVQN---------------G----------------RFGACLM--AEPELVADCVKA 127 (333)
T ss_pred HHHHHHHhcCCCEEEEcCCCCHHHccC---------------C----------------CeeeHHh--cCHHHHHHHHHH
Confidence 999999999999999999999741110 0 0011122 366778889999
Q ss_pred HHHhcCCcEEEEecC------C----HHHHHHHHHcCccEEEEccCCc-cCCC-------CccchHHHHHHHHHHccCCC
Q 017492 220 LQTITKLPILVKGVL------T----AEDARIAVQAGAAGIIVSNHGA-RQLD-------YVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 220 ir~~~~~Pv~vK~v~------~----~~~a~~a~~aG~d~I~vs~~gg-~~~~-------~~~~~~~~l~~i~~~~~~~i 281 (370)
+++.+++||.+|... + .+.++.+.++|+|+|.|++.-+ .+.. ..+..++.+.++++.+ .++
T Consensus 128 vr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~-~~i 206 (333)
T PRK11815 128 MKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDF-PHL 206 (333)
T ss_pred HHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhC-CCC
Confidence 999999999999742 1 2336778899999999953211 1111 1234577888887764 279
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH-----HH---hcCH----HHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS-----LA---AEGE----KGVRRVLEMLREEFELAMALSGCRSLKE 349 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~-----~~---~~G~----~~v~~~l~~l~~el~~~m~~~G~~~l~~ 349 (370)
|||++|||++.+|+.++++ |||+||+||+++.. -. ..|. ....++++.+.+.++..... |. .+..
T Consensus 207 PVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 283 (333)
T PRK11815 207 TIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQ-GG-RLNH 283 (333)
T ss_pred eEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc-Cc-hHHH
Confidence 9999999999999999987 89999999976532 11 1121 12345566666666665553 43 3666
Q ss_pred hcccce
Q 017492 350 ITRDHI 355 (370)
Q Consensus 350 l~~~~l 355 (370)
++++..
T Consensus 284 ~rk~~~ 289 (333)
T PRK11815 284 ITRHML 289 (333)
T ss_pred HHHHHH
Confidence 665543
No 53
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.77 E-value=3.9e-17 Score=156.84 Aligned_cols=223 Identities=18% Similarity=0.127 Sum_probs=150.9
Q ss_pred eeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCC--------------------------CCH-
Q 017492 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST--------------------------SSV- 114 (370)
Q Consensus 63 ~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~--------------------------~~~- 114 (370)
++++|.+|+.||++|+-... .+....+.+.+.|..+++. |... ..+
T Consensus 1 ~~~~Gl~l~nPi~~Asg~~~------~~~e~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~N~~G~~n~g~~ 74 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPWC------TTLEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGLD 74 (294)
T ss_pred CccCCeeCCCCCEECCCCCC------CCHHHHHHHHHcCCcEEEeCcccCCCCCCCCCCcEEecCccccccccCCCcCHH
Confidence 57899999999999984322 2445566666678776663 2110 112
Q ss_pred ---HHHhcc------CCCceEEEEeecCChHHHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccc
Q 017492 115 ---EEVAST------GPGIRFFQLYVYKDRNVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLK 182 (370)
Q Consensus 115 ---eei~~~------~~~~~~~Qly~~~d~~~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~ 182 (370)
+++.+. ...|.+.|+... .+...+.++++++. |++++.+|+.||..... .
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~----------------~ 136 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK----------------P 136 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc----------------c
Confidence 223221 125788898643 66666777777765 69999999999963100 0
Q ss_pred cccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH------HHHHHHHHc--CccEEEEcc
Q 017492 183 NFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA------EDARIAVQA--GAAGIIVSN 254 (370)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~------~~a~~a~~a--G~d~I~vs~ 254 (370)
. + ..+++...+.++++++.+++||++|+.... +.++.+.++ |+|+|++.|
T Consensus 137 ~--------------------~--~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 137 P--------------------P--AYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred c--------------------c--cCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 0 0 024455677899999999999999997422 224555677 999999876
Q ss_pred CCc---------cC-------CCCccc-------hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 255 HGA---------RQ-------LDYVPA-------TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 255 ~gg---------~~-------~~~~~~-------~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
.-+ +. ..+|.+ .+..+.++++.++.++|||++|||.+++|+++++.+|||+||+||+
T Consensus 195 t~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta 274 (294)
T cd04741 195 TLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTA 274 (294)
T ss_pred cCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchh
Confidence 421 11 112222 3345566767664469999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 017492 312 VVYSLAAEGEKGVRRVLEMLREEFELAM 339 (370)
Q Consensus 312 ~l~~~~~~G~~~v~~~l~~l~~el~~~m 339 (370)
+++ .|+. +++.+.++|+.+|
T Consensus 275 ~~~----~gp~----~~~~i~~~L~~~~ 294 (294)
T cd04741 275 LGK----EGPK----VFARIEKELEDIW 294 (294)
T ss_pred hhh----cCch----HHHHHHHHHHhhC
Confidence 986 2443 6677788887764
No 54
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.77 E-value=5.2e-17 Score=158.25 Aligned_cols=236 Identities=19% Similarity=0.197 Sum_probs=152.3
Q ss_pred chhhHHHhHhhcccceeeeccc-CCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CC
Q 017492 32 DQWTLQENRNAFSRILFRPRIL-IDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SW 109 (370)
Q Consensus 32 ~~~t~~~n~~~~~~i~l~pr~l-~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~ 109 (370)
-|.+.+-....+..+...|-.. +...+.|++|+++|.+++.||++|.- .. .+....+.+.+.|..+++. |.
T Consensus 9 ~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Gl~l~nPi~~AsG-~~------~~~~~~~~~~~~G~Gavv~kti 81 (327)
T cd04738 9 PETAHRLAIRALKLGLGPPLLLLLVYDDPRLEVEVFGLTFPNPVGLAAG-FD------KNAEAIDALLALGFGFVEVGTV 81 (327)
T ss_pred HHHHHHHHHHHHHhcCCCCCccccCCCCCCcceEECCEECCCCCEeCcC-CC------CCHHHHHHHHHCCCcEEEEecc
Confidence 3445555555665555555221 45678899999999999999988762 11 2334445545778776552 22
Q ss_pred CC----------------------------CC----HHHHhccC--CCceEEEEeecCC------hHHHHHHHHHHHHcC
Q 017492 110 ST----------------------------SS----VEEVASTG--PGIRFFQLYVYKD------RNVVAQLVRRAERAG 149 (370)
Q Consensus 110 ~~----------------------------~~----~eei~~~~--~~~~~~Qly~~~d------~~~~~~~l~ra~~~G 149 (370)
.. .. ++++.+.. ..|.++|+..... .+...+.++++.. .
T Consensus 82 t~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ 160 (327)
T cd04738 82 TPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-Y 160 (327)
T ss_pred CCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-h
Confidence 11 01 12232221 2567888864321 2333344444433 3
Q ss_pred CcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcC----
Q 017492 150 FKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITK---- 225 (370)
Q Consensus 150 ~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~---- 225 (370)
++++.+|+.||..... +. ..+++...+.++++++.++
T Consensus 161 ad~ielN~scP~~~g~----------------~~-----------------------~~~~~~~~~iv~av~~~~~~~~~ 201 (327)
T cd04738 161 ADYLVVNVSSPNTPGL----------------RD-----------------------LQGKEALRELLTAVKEERNKLGK 201 (327)
T ss_pred CCEEEEECCCCCCCcc----------------cc-----------------------ccCHHHHHHHHHHHHHHHhhccc
Confidence 8899999999863100 00 0133334567899998875
Q ss_pred -CcEEEEecCC------HHHHHHHHHcCccEEEEccCCc-------------cCCCCcc----chHHHHHHHHHHccCCC
Q 017492 226 -LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVP----ATIMALEEVVKATQGRI 281 (370)
Q Consensus 226 -~Pv~vK~v~~------~~~a~~a~~aG~d~I~vs~~gg-------------~~~~~~~----~~~~~l~~i~~~~~~~i 281 (370)
+||++|.... .+.++.+.++|+|+|+++|.-. .+...|+ .+++.+.++++.++.++
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 9999999732 2346788899999999987411 0001222 24677788888776579
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
||+++|||++++|+.+++.+|||+|++||++++
T Consensus 282 pIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 999999999999999999999999999999986
No 55
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.77 E-value=4.9e-17 Score=165.07 Aligned_cols=158 Identities=27% Similarity=0.331 Sum_probs=123.5
Q ss_pred CccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CC--CCccchHHHHHHHHHHcc-CCCc
Q 017492 211 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QL--DYVPATIMALEEVVKATQ-GRIP 282 (370)
Q Consensus 211 ~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~--~~~~~~~~~l~~i~~~~~-~~ip 282 (370)
...++.+++||+.+ +.+|+...+.+.+.++.+.++|+|+|.|.-..|+ +. ..+.|.+.++.++.++.. ..+|
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~ 332 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAH 332 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCc
Confidence 34677899999998 7999999999999999999999999998754443 11 236688899999888653 3799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH---------------------------HHH-----------------h
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVVY---------------------------SLA-----------------A 318 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~~l~---------------------------~~~-----------------~ 318 (370)
||++|||+++.|+.|+|++||++||+|+.|.- ++. .
T Consensus 333 via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~~~~~~~~~~ 412 (479)
T PRK07807 333 VWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAFDRARKALFE 412 (479)
T ss_pred EEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchhhhcccCCCC
Confidence 99999999999999999999999999998731 111 0
Q ss_pred cCHHH-----------HHHHHHHHHHHHHHHHHHcCCCChhhhcccc--eeecc---CCCCCCCCC
Q 017492 319 EGEKG-----------VRRVLEMLREEFELAMALSGCRSLKEITRDH--IVTEW---DASLPRPVP 368 (370)
Q Consensus 319 ~G~~~-----------v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~--l~~~~---~~~~~~~~~ 368 (370)
.|.++ +..++..|...||..|.++|+++|.||+..- +.... .-++|-+++
T Consensus 413 eGv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y~g~~~i~~~~~~~~~~~~t~~g~~e~~~h~~~ 478 (479)
T PRK07807 413 EGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTYAGARTLAEFHERAVVGVQSAAGYAEGRPLPTS 478 (479)
T ss_pred CCccceeeeccCCCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHhCCEEEEECccccccCCCCCCC
Confidence 12111 7788999999999999999999999999763 32221 345555554
No 56
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=99.76 E-value=3.4e-17 Score=163.19 Aligned_cols=262 Identities=21% Similarity=0.215 Sum_probs=175.8
Q ss_pred eeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHH
Q 017492 68 FKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAER 147 (370)
Q Consensus 68 ~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~ 147 (370)
..+..||.++.|+++.++ ++...++|+++.+.|..+..++.. ...+.. + .....+.|+- ......+.+.+.
T Consensus 163 ~~i~~~~~~~aMS~GAlS-~eA~~alA~a~~~~G~~sntGEGG-e~~~~~-~-~~~s~I~Qva-SGRFGV~~~yL~---- 233 (485)
T COG0069 163 LELKKRFVTGAMSFGALS-KEAHEALARAMNRIGTKSNTGEGG-EDPERY-E-DGRSAIKQVA-SGRFGVTPEYLA---- 233 (485)
T ss_pred ceeeecccccccCCcccc-HHHHHHHHHHHHHhcCcccCCCCC-CCHHHh-c-cccceEEEec-cccCccCHHHhC----
Confidence 567789999999998865 557889999999999887777664 444443 1 1245677853 344455444443
Q ss_pred cCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccch-hhHHHhhhcCCCC-ccHHH----HHHH
Q 017492 148 AGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDS-GLAAYVAGQIDRS-LSWKD----VKWL 220 (370)
Q Consensus 148 ~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~-~~~~~----i~~i 220 (370)
.++++.|-+..-. ++- .+=++|. +++. .+ ...... .....+++..+.+ ++.++ |.+|
T Consensus 234 -~a~~ieIKiaQGA---KPG---eGG~Lpg~KV~~-~I--------A~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dL 297 (485)
T COG0069 234 -NADAIEIKIAQGA---KPG---EGGQLPGEKVTP-EI--------AKTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDL 297 (485)
T ss_pred -ccceEEEEeccCC---CCC---CCCCCCCccCCH-HH--------HHhcCCCCCCCCcCCCCcccccCHHHHHHHHHHH
Confidence 3444555443211 100 0111221 1110 00 000000 0001223323333 25554 5666
Q ss_pred HHhc-CCcEEEEecC--CHHHHHH-HHHcCccEEEEccC-CccC-------CCCccchHHHHHHHHHHc-----cCCCcE
Q 017492 221 QTIT-KLPILVKGVL--TAEDARI-AVQAGAAGIIVSNH-GARQ-------LDYVPATIMALEEVVKAT-----QGRIPV 283 (370)
Q Consensus 221 r~~~-~~Pv~vK~v~--~~~~a~~-a~~aG~d~I~vs~~-gg~~-------~~~~~~~~~~l~~i~~~~-----~~~ipv 283 (370)
|+.. ..+|.||.+. ..+.+.. +.++++|.|+|+++ ||+. .+.|.|....|++..+.+ ++++.|
T Consensus 298 k~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v~l 377 (485)
T COG0069 298 KEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKVKL 377 (485)
T ss_pred HhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCcceeEE
Confidence 6665 4679999984 3455444 88999999999998 4552 246777777888888765 568999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc-----------------------------CHHHHHHHHHHHHHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE-----------------------------GEKGVRRVLEMLREE 334 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~-----------------------------G~~~v~~~l~~l~~e 334 (370)
+++||++|+.||+|+++||||.|.+|++.|.++.|. .++.|.+++..+.+|
T Consensus 378 ~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e 457 (485)
T COG0069 378 IADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEE 457 (485)
T ss_pred EecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988762 357899999999999
Q ss_pred HHHHHHHcCCCChhhhcccc
Q 017492 335 FELAMALSGCRSLKEITRDH 354 (370)
Q Consensus 335 l~~~m~~~G~~~l~~l~~~~ 354 (370)
++.+|+.+|.+++++|.++.
T Consensus 458 ~rella~lG~~~l~el~g~~ 477 (485)
T COG0069 458 LRELLAALGKRSLSELIGRT 477 (485)
T ss_pred HHHHHHHhCCCCHHHHhcch
Confidence 99999999999999999664
No 57
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.75 E-value=1.1e-16 Score=153.40 Aligned_cols=207 Identities=23% Similarity=0.295 Sum_probs=147.3
Q ss_pred eeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeec-CCCC------------------------------
Q 017492 63 TTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLS-SWST------------------------------ 111 (370)
Q Consensus 63 ~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s-~~~~------------------------------ 111 (370)
|+|+|.+++.||++|+.... .+....+.+.++|..+++. |...
T Consensus 1 ~~~~G~~~~nPv~~aag~~~------~~~~~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~ 74 (289)
T cd02810 1 VNFLGLKLKNPFGVAAGPLL------KTGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNS 74 (289)
T ss_pred CeECCEECCCCCEeCCCCCC------CCHHHHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeec
Confidence 57899999999999986543 2456777777887776652 2110
Q ss_pred -----CCHH----HHhcc----CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCc
Q 017492 112 -----SSVE----EVAST----GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF 178 (370)
Q Consensus 112 -----~~~e----ei~~~----~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~ 178 (370)
..++ ++.+. ...+..+||. ..+.+...+.++++++.|++++.+|+.||.....
T Consensus 75 ~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~------------- 140 (289)
T cd02810 75 FGLPNLGLDVWLQDIAKAKKEFPGQPLIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGG------------- 140 (289)
T ss_pred CCCCCcCHHHHHHHHHHHHhccCCCeEEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-------------
Confidence 0111 22211 1256788986 4567788888999999999999999999963110
Q ss_pred cccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEec--CC----HHHHHHHHHcCccEEEE
Q 017492 179 LTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGV--LT----AEDARIAVQAGAAGIIV 252 (370)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v--~~----~~~a~~a~~aG~d~I~v 252 (370)
+. + ..++.+..+.++++|+.+++||++|.. .+ .+.++.+.++|+|+|++
T Consensus 141 ---~~--------------------~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~ 195 (289)
T cd02810 141 ---RQ--------------------L--GQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTA 195 (289)
T ss_pred ---cc--------------------c--ccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00 0 013345667899999988999999976 33 34578889999999999
Q ss_pred ccCC-ccC------------CC---Ccc----chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 253 SNHG-ARQ------------LD---YVP----ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 253 s~~g-g~~------------~~---~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
+|+- ++. .. .+. ..++.+.++++.++.++|||++|||++++|+.+++++|||+|++||++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~ 275 (289)
T cd02810 196 INTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATAL 275 (289)
T ss_pred EcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHH
Confidence 8752 110 01 111 135667777777644799999999999999999999999999999999
Q ss_pred HH
Q 017492 313 VY 314 (370)
Q Consensus 313 l~ 314 (370)
+.
T Consensus 276 ~~ 277 (289)
T cd02810 276 MW 277 (289)
T ss_pred Hh
Confidence 86
No 58
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.74 E-value=9.7e-17 Score=148.45 Aligned_cols=200 Identities=21% Similarity=0.237 Sum_probs=147.2
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCC------CHH--HHhccC--CCceEEEEeecCChHHHHHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS------SVE--EVASTG--PGIRFFQLYVYKDRNVVAQLV 142 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~------~~e--ei~~~~--~~~~~~Qly~~~d~~~~~~~l 142 (370)
|+++|||.+.+ |.++++.+.++|...+.++|... .-+ ...... +.+..+||. ..+.+...+..
T Consensus 1 ~~~~aPm~~~~------~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~-g~~~~~~~~aa 73 (231)
T cd02801 1 KLILAPMVGVT------DLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLG-GSDPETLAEAA 73 (231)
T ss_pred CeEeCCCCCCc------CHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEc-CCCHHHHHHHH
Confidence 68899998764 88999999999988888877321 111 111111 257889987 56778888899
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHH
Q 017492 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (370)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 222 (370)
++++++|++.+.||+.||..-.|. .++ +..+ ..++.+..+.++++++
T Consensus 74 ~~~~~aG~d~ieln~g~p~~~~~~----~~~---------------------------G~~l--~~~~~~~~eii~~v~~ 120 (231)
T cd02801 74 KIVEELGADGIDLNMGCPSPKVTK----GGA---------------------------GAAL--LKDPELVAEIVRAVRE 120 (231)
T ss_pred HHHHhcCCCEEEEeCCCCHHHHhC----CCe---------------------------eehh--cCCHHHHHHHHHHHHH
Confidence 999999999999999998531110 000 0001 1355667888999999
Q ss_pred hcCCcEEEEecCCH-------HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHH
Q 017492 223 ITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDV 295 (370)
Q Consensus 223 ~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv 295 (370)
.++.|+.+|..... +.++.+.++|+|+|.+++....+...++..++.+..+++.. ++||+++|||++.+|+
T Consensus 121 ~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~ 198 (231)
T cd02801 121 AVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDA 198 (231)
T ss_pred hcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHH
Confidence 98999999975322 23567888999999995432222234456778888888765 7999999999999999
Q ss_pred HHHHHh-CCCEEEEcHHHHH
Q 017492 296 FKALAL-GASGIFIGRPVVY 314 (370)
Q Consensus 296 ~kalal-GAd~V~igr~~l~ 314 (370)
.+++.. |||+|++||+++.
T Consensus 199 ~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 199 LRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HHHHHhcCCCEEEEcHHhHh
Confidence 999998 8999999999875
No 59
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.71 E-value=2.8e-16 Score=145.94 Aligned_cols=188 Identities=16% Similarity=0.145 Sum_probs=132.8
Q ss_pred ceeecccccccccCChhhHHHHHH-HHHcCCceeecCCCC----------------------CCHHHHh------ccCCC
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARA-ASAAGTIMTLSSWST----------------------SSVEEVA------STGPG 123 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~a-a~~~G~~~~~s~~~~----------------------~~~eei~------~~~~~ 123 (370)
|+++|||+|.+ +..++++ |...|+. +++.++. .+++.+. ...+.
T Consensus 1 ~~~lApMag~t------d~~f~~~~~~~~g~~-~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~ 73 (233)
T cd02911 1 PVALASMAGIT------DGDFCRKRADHAGLV-FLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNV 73 (233)
T ss_pred CceeeecCCCc------CHHHHHhhCccCCEE-EEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCC
Confidence 89999999875 6688884 5555554 4543221 1222221 11124
Q ss_pred ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017492 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (370)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (370)
+..+||+ ..+.+...+.++++++. ++.|.+|+.||... +... +.++.
T Consensus 74 p~~vqi~-g~~~~~~~~aa~~~~~~-~~~ielN~gCP~~~---------------v~~~----------------g~G~~ 120 (233)
T cd02911 74 LVGVNVR-SSSLEPLLNAAALVAKN-AAILEINAHCRQPE---------------MVEA----------------GAGEA 120 (233)
T ss_pred eEEEEec-CCCHHHHHHHHHHHhhc-CCEEEEECCCCcHH---------------HhcC----------------CcchH
Confidence 7899998 57788888888888774 69999999999731 0000 11222
Q ss_pred hhhcCCCCccHHHHHHHHHhcCCcEEEEecC-----CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc
Q 017492 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGVL-----TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ 278 (370)
Q Consensus 204 ~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~-----~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~ 278 (370)
+. .+++...+.++.+++ .++||++|... ..+.++.+.++|+|+|.+++. . .+....++.+.+++ .
T Consensus 121 Ll--~~p~~l~eiv~avr~-~~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~--~--~g~~ad~~~I~~i~--~- 190 (233)
T cd02911 121 LL--KDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAM--D--PGNHADLKKIRDIS--T- 190 (233)
T ss_pred Hc--CCHHHHHHHHHHHHh-cCCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcC--C--CCCCCcHHHHHHhc--C-
Confidence 33 366667788999988 59999999863 345578899999999877542 1 11245667777765 3
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 279 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 279 ~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
++|||+.|||.+++|+.+++..|||+||+||+
T Consensus 191 -~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 191 -ELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred -CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 79999999999999999999999999999995
No 60
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.71 E-value=4.4e-16 Score=171.12 Aligned_cols=256 Identities=20% Similarity=0.148 Sum_probs=171.2
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCc
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFK 151 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ 151 (370)
.+|.++.|++++++ ++...++|+++.+.|+....++.. ...++... .....++|+- ......+.+.+. .++
T Consensus 859 ~rf~~~aMSfGalS-~eA~~aLA~a~~~~G~~sntGEGG-~~p~~~~~-~~~~~i~Qia-SGrFGv~~e~l~-----~a~ 929 (1485)
T PRK11750 859 KRFDSAAMSIGALS-PEAHEALAIAMNRLGGRSNSGEGG-EDPARYGT-EKVSKIKQVA-SGRFGVTPAYLV-----NAE 929 (1485)
T ss_pred cccccccCCCCccC-HHHHHHHHHHHHHhCCceecCCCC-CCHHHHhc-ccCCeEEEcc-CCcCCCCHHHhc-----cCC
Confidence 46899999999765 557889999999999997777664 55555532 2235678864 233344444443 356
Q ss_pred EEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhcCCCCc-cHHH----HHHHHHhc-
Q 017492 152 AIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKD----VKWLQTIT- 224 (370)
Q Consensus 152 ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~----i~~ir~~~- 224 (370)
.|.|.+.--.. +. .|-.+|. +++. .+..+. ........+++..+++. +.++ |.++|+..
T Consensus 930 ~ieIKi~QGAK---PG---~GG~Lpg~KV~~-~IA~~R-------~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~ 995 (1485)
T PRK11750 930 VLQIKVAQGAK---PG---EGGQLPGDKVNP-LIARLR-------YSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNP 995 (1485)
T ss_pred EEEEEecCCCC---CC---CCCcCccccCCH-HHHHHc-------CCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCC
Confidence 67766542210 00 0111221 1110 000000 00001112333344444 5554 56667666
Q ss_pred CCcEEEEecCC--H-HHHHHHHHcCccEEEEccCC-ccC-------CCCccchHHHHHHHHHHc-----cCCCcEEEecC
Q 017492 225 KLPILVKGVLT--A-EDARIAVQAGAAGIIVSNHG-ARQ-------LDYVPATIMALEEVVKAT-----QGRIPVFLDGG 288 (370)
Q Consensus 225 ~~Pv~vK~v~~--~-~~a~~a~~aG~d~I~vs~~g-g~~-------~~~~~~~~~~l~~i~~~~-----~~~ipvi~~GG 288 (370)
+.||.||.+.. . ..+.-+.++|+|.|+|++|. |+. .+.|.|....|.++.+.+ ++++.++++||
T Consensus 996 ~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Gg 1075 (1485)
T PRK11750 996 KALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGG 1075 (1485)
T ss_pred CCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCC
Confidence 57999999743 2 23445778999999999984 442 235666666788777765 46899999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc----------------------------CHHHHHHHHHHHHHHHHHHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVVYSLAAE----------------------------GEKGVRRVLEMLREEFELAMA 340 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l~~~~~~----------------------------G~~~v~~~l~~l~~el~~~m~ 340 (370)
++|+.|++||++||||.|.+|+++|.++.|. ..+.|.+++..+.+|++.+|+
T Consensus 1076 l~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el~~~la 1155 (1485)
T PRK11750 1076 LKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEETREWMA 1155 (1485)
T ss_pred cCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988762 136789999999999999999
Q ss_pred HcCCCChhhh
Q 017492 341 LSGCRSLKEI 350 (370)
Q Consensus 341 ~~G~~~l~~l 350 (370)
.+|.++++||
T Consensus 1156 ~lG~~s~~el 1165 (1485)
T PRK11750 1156 QLGVRSLEDL 1165 (1485)
T ss_pred HhCCCCHHHh
Confidence 9999999999
No 61
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=99.69 E-value=1.8e-16 Score=152.41 Aligned_cols=147 Identities=26% Similarity=0.351 Sum_probs=117.6
Q ss_pred cCCCCccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----C--CCCccchHHHHHHHHHHcc-
Q 017492 207 QIDRSLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----Q--LDYVPATIMALEEVVKATQ- 278 (370)
Q Consensus 207 ~~d~~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~--~~~~~~~~~~l~~i~~~~~- 278 (370)
++...+..++|+|+++.+ +++|+...+.+.+.|+.++++|||++.|....|+ | ...|.|...++.++.+...
T Consensus 273 qGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q 352 (503)
T KOG2550|consen 273 QGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQ 352 (503)
T ss_pred CCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHh
Confidence 455667889999999998 6788888899999999999999999999765553 2 3356666667766666542
Q ss_pred CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH--------------------HHH------Hh--------------
Q 017492 279 GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV--------------------YSL------AA-------------- 318 (370)
Q Consensus 279 ~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l--------------------~~~------~~-------------- 318 (370)
..+|||+||||++..++.|||.+||++||+|.-+- +++ ..
T Consensus 353 ~gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~rlKkyrGMGSl~AM~~~s~~rY~~e~dkvk 432 (503)
T KOG2550|consen 353 FGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVK 432 (503)
T ss_pred cCCceeecCCcCccchhHhhhhcCchhheecceeeeeeccCcceeeecCeeehhccCcchHHHHhhhhhhccccccceEe
Confidence 37999999999999999999999999999998441 111 10
Q ss_pred --cCH-------HHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 319 --EGE-------KGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 319 --~G~-------~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
.|. -.+.+++..+..+++..++..|++++++++..
T Consensus 433 iAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~ 476 (503)
T KOG2550|consen 433 IAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREM 476 (503)
T ss_pred eccCcEEEeccCcchhhhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 011 13888999999999999999999999999864
No 62
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.69 E-value=3.4e-15 Score=145.72 Aligned_cols=103 Identities=21% Similarity=0.257 Sum_probs=77.8
Q ss_pred ccHHHHHHHHHhcC-------CcEEEEecCC------HHHHHHHHHcCccEEEEccCCc-------------cCCCCccc
Q 017492 212 LSWKDVKWLQTITK-------LPILVKGVLT------AEDARIAVQAGAAGIIVSNHGA-------------RQLDYVPA 265 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-------~Pv~vK~v~~------~~~a~~a~~aG~d~I~vs~~gg-------------~~~~~~~~ 265 (370)
...+.++++++.++ +||++|+..+ .+.++.+.++|+|+|++.|+-. ...-+|++
T Consensus 190 ~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~ 269 (335)
T TIGR01036 190 ELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKP 269 (335)
T ss_pred HHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHH
Confidence 34556788877765 9999999743 2346788999999999998521 00011222
Q ss_pred ----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 266 ----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 266 ----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+..+.++.+.+.+++|||+.|||.+++|+.+++.+||++|++||++++
T Consensus 270 i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 270 LQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 3345666666665679999999999999999999999999999999986
No 63
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.68 E-value=1.6e-15 Score=145.91 Aligned_cols=119 Identities=24% Similarity=0.321 Sum_probs=85.5
Q ss_pred cHHHHHHHHHhcCCcEEEEecC---CH---HHHHHHHHcCccEEEEccCCcc----------CC----C---Ccc----c
Q 017492 213 SWKDVKWLQTITKLPILVKGVL---TA---EDARIAVQAGAAGIIVSNHGAR----------QL----D---YVP----A 265 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~---~~---~~a~~a~~aG~d~I~vs~~gg~----------~~----~---~~~----~ 265 (370)
..+.++++++..++||++|+.. .. ..+..+.+.|+++|++.|.-.. .. . +|+ .
T Consensus 150 ~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~ 229 (295)
T PF01180_consen 150 VAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPI 229 (295)
T ss_dssp HHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHH
T ss_pred HHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhH
Confidence 4556788888889999999975 22 2345556889999998774211 11 1 122 2
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 339 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m 339 (370)
++..+.++++.++.++|||++|||.+++|+.++|.+||++|++++.+++. |+. +++.+.+||+.+|
T Consensus 230 aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~----Gp~----~~~~i~~~L~~~l 295 (295)
T PF01180_consen 230 ALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYR----GPG----VIRRINRELEEWL 295 (295)
T ss_dssp HHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHH----GTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhc----CcH----HHHHHHHHHHhhC
Confidence 45667777777755799999999999999999999999999999999873 554 6778888888877
No 64
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.6e-15 Score=143.60 Aligned_cols=206 Identities=24% Similarity=0.285 Sum_probs=153.3
Q ss_pred EcCeeecCce-eecccccccccCChhhHHHHHHHHHcCCceeecCCCCC-C-H--HHH----hccCC--CceEEEEeecC
Q 017492 65 VLGFKISMPI-MIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTS-S-V--EEV----ASTGP--GIRFFQLYVYK 133 (370)
Q Consensus 65 l~g~~l~~Pi-~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~-~-~--eei----~~~~~--~~~~~Qly~~~ 133 (370)
+|-.+...|. ++|||-..+ |+++++.++..|...+.+.|-.. + . |.- ....+ .|.++|+- .+
T Consensus 11 ~f~~~~~~~~ri~APMvd~S------~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~-~n 83 (358)
T KOG2335|consen 11 IFWSKQGRPKRIVAPMVDYS------ELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFG-GN 83 (358)
T ss_pred hhhhhcCCcccccCCccccc------HHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEc-CC
Confidence 3344444443 589997664 88999999999998888876210 0 0 110 11122 68999965 78
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
|.+.+.+.++.+...+ ++|.||++||.. . ..+.+ .+.+++ .++++.
T Consensus 84 dp~~ll~Aa~lv~~y~-D~idlNcGCPq~---~-a~~g~---------------------------yGa~L~--~~~eLv 129 (358)
T KOG2335|consen 84 DPENLLKAARLVQPYC-DGIDLNCGCPQK---V-AKRGG---------------------------YGAFLM--DNPELV 129 (358)
T ss_pred CHHHHHHHHHHhhhhc-CcccccCCCCHH---H-HhcCC---------------------------ccceec--cCHHHH
Confidence 8898888888877776 999999999952 0 01111 122233 245666
Q ss_pred HHHHHHHHHhcCCcEEEEec------CCHHHHHHHHHcCccEEEEccCCccC----CCCccchHHHHHHHHHHccCCCcE
Q 017492 214 WKDVKWLQTITKLPILVKGV------LTAEDARIAVQAGAAGIIVSNHGARQ----LDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v------~~~~~a~~a~~aG~d~I~vs~~gg~~----~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
-++++.++..++.||.+|.. -+.+.++.+.++|++.++| ||.+. ...++..|+.+..+++.+++ +||
T Consensus 130 ~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltV--HGRtr~~kg~~~~pad~~~i~~v~~~~~~-ipv 206 (358)
T KOG2335|consen 130 GEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTV--HGRTREQKGLKTGPADWEAIKAVRENVPD-IPV 206 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEE--ecccHHhcCCCCCCcCHHHHHHHHHhCcC-CcE
Confidence 77899999999999999985 3456799999999999999 77652 23678899999999998854 999
Q ss_pred EEecCCCCHHHHHHHHH-hCCCEEEEcHHHHH
Q 017492 284 FLDGGVRRGTDVFKALA-LGASGIFIGRPVVY 314 (370)
Q Consensus 284 i~~GGI~~~~dv~kala-lGAd~V~igr~~l~ 314 (370)
++.|+|.+..|+..++. .|||+||.|+.+|+
T Consensus 207 iaNGnI~~~~d~~~~~~~tG~dGVM~arglL~ 238 (358)
T KOG2335|consen 207 IANGNILSLEDVERCLKYTGADGVMSARGLLY 238 (358)
T ss_pred EeeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence 99999999999999999 99999999996553
No 65
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.64 E-value=3e-14 Score=137.54 Aligned_cols=183 Identities=22% Similarity=0.243 Sum_probs=130.8
Q ss_pred eEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------hccCCCceEEEEeecCChH
Q 017492 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (370)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~Qly~~~d~~ 136 (370)
++|| +..||+.+||++.+ +..|+.++.++|...+++.. ..++|++ .+....|+.+.+....+.
T Consensus 6 ~~lg--i~~Pii~apM~~~s------~~~la~avs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~- 75 (307)
T TIGR03151 6 DLLG--IEYPIFQGGMAWVA------TGSLAAAVSNAGGLGIIGAG-NAPPDVVRKEIRKVKELTDKPFGVNIMLLSPF- 75 (307)
T ss_pred HHhC--CCCCEEcCCCCCCC------CHHHHHHHHhCCCcceeccc-cCCHHHHHHHHHHHHHhcCCCcEEeeecCCCC-
Confidence 3455 45899999998743 45899999999999888753 2344433 222234666665432221
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
..+.++.+.+.|++.+.++.+ .+ .+.
T Consensus 76 -~~~~~~~~~~~~v~~v~~~~g--------------------------------------------------~p---~~~ 101 (307)
T TIGR03151 76 -VDELVDLVIEEKVPVVTTGAG--------------------------------------------------NP---GKY 101 (307)
T ss_pred -HHHHHHHHHhCCCCEEEEcCC--------------------------------------------------Cc---HHH
Confidence 234555566677766554211 11 235
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
++++++. +++|+. .+.+.++++.+.++|+|.|++.++ ||+. +..+++..++++++.+ ++|||+.|||.++.|
T Consensus 102 i~~lk~~-g~~v~~-~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~ 175 (307)
T TIGR03151 102 IPRLKEN-GVKVIP-VVASVALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQVVDAV--SIPVIAAGGIADGRG 175 (307)
T ss_pred HHHHHHc-CCEEEE-EcCCHHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHHHHHHh--CCCEEEECCCCCHHH
Confidence 6777665 677764 568899999999999999999775 3432 2345788999999887 799999999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHHHH
Q 017492 295 VFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l~~~ 316 (370)
+.+++++||++|++|+.|+...
T Consensus 176 ~~~al~~GA~gV~iGt~f~~t~ 197 (307)
T TIGR03151 176 MAAAFALGAEAVQMGTRFLCAK 197 (307)
T ss_pred HHHHHHcCCCEeecchHHhccc
Confidence 9999999999999999998654
No 66
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.62 E-value=5.9e-14 Score=136.98 Aligned_cols=199 Identities=24% Similarity=0.293 Sum_probs=115.5
Q ss_pred eEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------hccCCCceEEEEeecCChH
Q 017492 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRN 136 (370)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~Qly~~~d~~ 136 (370)
.+|| ++.||+.+||++. . .-.|+-+.+++|...+++.. ..+.+++ .+..+.|+.++++.+....
T Consensus 6 ~~lg--i~~PIiqapM~~i--s----~~~LaaAVs~aGglG~l~~~-~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~ 76 (330)
T PF03060_consen 6 ELLG--IKYPIIQAPMGGI--S----TPELAAAVSNAGGLGFLGAG-GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDP 76 (330)
T ss_dssp HHHT---SSSEEE---TTT--S----SHHHHHHHHHTTSBEEEECT-TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTH
T ss_pred HHhC--CCcCEEcCCCCCC--C----hHHHHHHHHhCCCEeecccc-ccChHHHHHHHHHHHhhccccccccccccCccc
Confidence 3455 4679999999874 3 33799999999999999854 3444433 2333457888887654433
Q ss_pred HHH----------HHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCC-CCccccccccccccCccccccchhhHHHhh
Q 017492 137 VVA----------QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (370)
Q Consensus 137 ~~~----------~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (370)
... ..++...+.+.. -+..+...+.. |+.+ ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~v------------------------~~ 119 (330)
T PF03060_consen 77 ADEEDAWPKELGNAVLELCIEEGVP-------------FEEQLDVALEAKPDVV------------------------SF 119 (330)
T ss_dssp HHH-HHHHHHTHHHHHHHHHHTT-S-------------HHHHHHHHHHS--SEE------------------------EE
T ss_pred chhhhhhhhhhHHHHHHHHHHhCcc-------------cccccccccccceEEE------------------------Ee
Confidence 322 111122222222 00000000000 0000 00
Q ss_pred hcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCC-CCccchHHHHHHHHHHccCCCc
Q 017492 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL-DYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 206 ~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~-~~~~~~~~~l~~i~~~~~~~ip 282 (370)
..+.| ..+.++.+++ .++.++. .+.+.++|+.+.++|+|+|++.+. ||+.. +.+ +++..++++++.+ ++|
T Consensus 120 ~~G~p--~~~~i~~l~~-~gi~v~~-~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~~-~~~~L~~~v~~~~--~iP 192 (330)
T PF03060_consen 120 GFGLP--PPEVIERLHA-AGIKVIP-QVTSVREARKAAKAGADAIVAQGPEAGGHRGFEVG-STFSLLPQVRDAV--DIP 192 (330)
T ss_dssp ESSSC---HHHHHHHHH-TT-EEEE-EESSHHHHHHHHHTT-SEEEEE-TTSSEE---SSG--HHHHHHHHHHH---SS-
T ss_pred ecccc--hHHHHHHHHH-cCCcccc-ccCCHHHHHHhhhcCCCEEEEeccccCCCCCcccc-ceeeHHHHHhhhc--CCc
Confidence 00111 2456777765 4777765 478999999999999999999874 56543 222 5778889999888 799
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
||+.|||.++.++..+|++||++|++|+.|+..
T Consensus 193 ViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t 225 (330)
T PF03060_consen 193 VIAAGGIADGRGIAAALALGADGVQMGTRFLAT 225 (330)
T ss_dssp EEEESS--SHHHHHHHHHCT-SEEEESHHHHTS
T ss_pred EEEecCcCCHHHHHHHHHcCCCEeecCCeEEec
Confidence 999999999999999999999999999999854
No 67
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.59 E-value=3e-14 Score=131.55 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=115.1
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
.+..+|+- ..+.+...+.++.+++ +++.+.||+.||+. ++... +.+.
T Consensus 68 ~~vivnv~-~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~---------------~v~~~----------------g~G~ 114 (231)
T TIGR00736 68 ALVSVNVR-FVDLEEAYDVLLTIAE-HADIIEINAHCRQP---------------EITEI----------------GIGQ 114 (231)
T ss_pred CCEEEEEe-cCCHHHHHHHHHHHhc-CCCEEEEECCCCcH---------------HHcCC----------------CCch
Confidence 57899986 5677777777777755 89999999999973 01100 1122
Q ss_pred HhhhcCCCCccHHHHHHHHHhcCCcEEEEecCC------HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH
Q 017492 203 YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLT------AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 276 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~------~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~ 276 (370)
.+. .|++...+.++.+++ .++||++|+... .+.++.+.++|+|+|.|. .++.. .+...++.+.++++.
T Consensus 115 ~Ll--~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd--~~~~g-~~~a~~~~I~~i~~~ 188 (231)
T TIGR00736 115 ELL--KNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD--AMYPG-KPYADMDLLKILSEE 188 (231)
T ss_pred hhc--CCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe--eCCCC-CchhhHHHHHHHHHh
Confidence 222 366667778888884 589999999742 255889999999999994 32210 122678899999988
Q ss_pred ccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 277 TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 277 ~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
++ .+|||++|||.+.+|+.+++..|||+||+||+.+.
T Consensus 189 ~~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 189 FN-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred cC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 72 49999999999999999999999999999998875
No 68
>KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.54 E-value=2.5e-13 Score=127.18 Aligned_cols=121 Identities=28% Similarity=0.454 Sum_probs=95.4
Q ss_pred CCcEEEEecCCH-----HH-HHHHHHcCccEEEEccCCc-c----------CCC---Cccc----hHHHHHHHHHHccCC
Q 017492 225 KLPILVKGVLTA-----ED-ARIAVQAGAAGIIVSNHGA-R----------QLD---YVPA----TIMALEEVVKATQGR 280 (370)
Q Consensus 225 ~~Pv~vK~v~~~-----~~-a~~a~~aG~d~I~vs~~gg-~----------~~~---~~~~----~~~~l~~i~~~~~~~ 280 (370)
+.|+.+|...+. +| +..+.+.+.|+++++|.-- | .-. +|++ +...++.+....+++
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 459999986432 23 5556789999999998421 1 001 2222 445677777777889
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 281 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
||||..|||.+|.|+.+-+.+||+.|+++++|.| .|+. +++.++.||...|...|++++.|+.+.
T Consensus 332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp~----i~~kIk~El~~ll~~kG~t~v~d~iG~ 396 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGPA----IIEKIKRELSALLKAKGFTSVDDAIGK 396 (398)
T ss_pred CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCch----hHHHHHHHHHHHHHhcCCCcHHHhccC
Confidence 9999999999999999999999999999999876 3553 789999999999999999999998764
No 69
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.51 E-value=2.7e-12 Score=119.12 Aligned_cols=188 Identities=24% Similarity=0.292 Sum_probs=128.2
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHH-------hccCCCceEEEEeecCChHHHHHHHH
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEV-------ASTGPGIRFFQLYVYKDRNVVAQLVR 143 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei-------~~~~~~~~~~Qly~~~d~~~~~~~l~ 143 (370)
..|++.|||.+.+ +..+++++.+.|....++.. ..+.+++ .+..+.+..+++..........+.++
T Consensus 2 ~~pi~~a~m~g~~------~~~~~~~~~~~G~ig~i~~~-~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~ 74 (236)
T cd04730 2 RYPIIQAPMAGVS------TPELAAAVSNAGGLGFIGAG-YLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLE 74 (236)
T ss_pred CCCEECCCCCCCC------CHHHHHHHHhCCCccccCCC-CCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHH
Confidence 4799999998764 55899999999865555422 2233322 22221245577765332134556788
Q ss_pred HHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHh
Q 017492 144 RAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTI 223 (370)
Q Consensus 144 ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~ 223 (370)
.+.++|++.+.++-+. ..+.++++++
T Consensus 75 ~~~~~g~d~v~l~~~~-----------------------------------------------------~~~~~~~~~~- 100 (236)
T cd04730 75 VALEEGVPVVSFSFGP-----------------------------------------------------PAEVVERLKA- 100 (236)
T ss_pred HHHhCCCCEEEEcCCC-----------------------------------------------------CHHHHHHHHH-
Confidence 8889999988764210 1223444443
Q ss_pred cCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh
Q 017492 224 TKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL 301 (370)
Q Consensus 224 ~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal 301 (370)
.+++++++ +.+.++++.+.+.|+|+|.+.+. +|.........++.+.++++.. ++||++.|||++++|+.+++.+
T Consensus 101 ~~i~~i~~-v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~ 177 (236)
T cd04730 101 AGIKVIPT-VTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALAL 177 (236)
T ss_pred cCCEEEEe-CCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHc
Confidence 36777765 56778899999999999998653 2221111134577888888776 7999999999999999999999
Q ss_pred CCCEEEEcHHHHHHHHhcCHH
Q 017492 302 GASGIFIGRPVVYSLAAEGEK 322 (370)
Q Consensus 302 GAd~V~igr~~l~~~~~~G~~ 322 (370)
|||+|++||+++....+.+..
T Consensus 178 GadgV~vgS~l~~~~e~~~~~ 198 (236)
T cd04730 178 GADGVQMGTRFLATEESGASP 198 (236)
T ss_pred CCcEEEEchhhhcCcccCCCH
Confidence 999999999999865554443
No 70
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.43 E-value=3.9e-12 Score=124.02 Aligned_cols=101 Identities=32% Similarity=0.448 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCC--CCccchHHHHHHHHHHccCC-CcEEEecC
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQL--DYVPATIMALEEVVKATQGR-IPVFLDGG 288 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~--~~~~~~~~~l~~i~~~~~~~-ipvi~~GG 288 (370)
.+.++.+++ .+..++.+ +.+...|+++.++|+|+|++.+. ||+.- +..+++..+++++++++ + +|||+.||
T Consensus 117 ~~~i~~~~~-~g~~v~~~-v~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~--~~iPViAAGG 192 (336)
T COG2070 117 AEFVARLKA-AGIKVIHS-VITVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAV--DGIPVIAAGG 192 (336)
T ss_pred HHHHHHHHH-cCCeEEEE-eCCHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHh--cCCCEEEecC
Confidence 456777776 56776655 67899999999999999999764 45432 34567788999999998 6 99999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
|.++.++..|+++||++|++|+.|+..-.|
T Consensus 193 I~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea 222 (336)
T COG2070 193 IADGRGIAAALALGADGVQMGTRFLATKEA 222 (336)
T ss_pred ccChHHHHHHHHhccHHHHhhhhhhccccc
Confidence 999999999999999999999999865433
No 71
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.38 E-value=3.6e-11 Score=115.76 Aligned_cols=182 Identities=15% Similarity=0.190 Sum_probs=122.9
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-------cc-CCCceEEEEeecCChHHHHHHH
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-GPGIRFFQLYVYKDRNVVAQLV 142 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~-~~~~~~~Qly~~~d~~~~~~~l 142 (370)
..||+.+||++.+ + .-.|+.+.+++|...+++.. ..+.|++. +. ...|+.+.|-.+.+.....+.+
T Consensus 2 ~yPIiqgpM~~vs--~---~~~LaaAVS~AGgLG~la~~-~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVS--D---VAEFAVAVAEGGGLPFIALA-LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCC--C---cHHHHHHHHhCCccccCCCC-CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 5799999998754 1 13799999999988777643 34444322 21 2356777764332223334556
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHH
Q 017492 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (370)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 222 (370)
+.+.+.+.+.+.++.+ .|. .++++++
T Consensus 76 ~vi~e~~v~~V~~~~G--------------------------------------------------~P~----~~~~lk~ 101 (320)
T cd04743 76 AVVRAIKPTFALIAGG--------------------------------------------------RPD----QARALEA 101 (320)
T ss_pred HHHHhcCCcEEEEcCC--------------------------------------------------ChH----HHHHHHH
Confidence 6666666665543311 111 1355554
Q ss_pred hcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHcc--------CCCcEEEecCCCCH
Q 017492 223 ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ--------GRIPVFLDGGVRRG 292 (370)
Q Consensus 223 ~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~--------~~ipvi~~GGI~~~ 292 (370)
.+++++.. +.+++.|+++.++|+|+|++.++ ||+. +..+++..++++.+.+. .++|||+.|||.++
T Consensus 102 -~Gi~v~~~-v~s~~~A~~a~~~GaD~vVaqG~EAGGH~--G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dg 177 (320)
T cd04743 102 -IGISTYLH-VPSPGLLKQFLENGARKFIFEGRECGGHV--GPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDE 177 (320)
T ss_pred -CCCEEEEE-eCCHHHHHHHHHcCCCEEEEecCcCcCCC--CCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCH
Confidence 47777633 68899999999999999999875 5553 22344555666655441 26999999999999
Q ss_pred HHHHHHHHhCC--------CEEEEcHHHHHHH
Q 017492 293 TDVFKALALGA--------SGIFIGRPVVYSL 316 (370)
Q Consensus 293 ~dv~kalalGA--------d~V~igr~~l~~~ 316 (370)
..+..++++|| ++|+||+.|+..-
T Consensus 178 r~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~ 209 (320)
T cd04743 178 RSAAMVSALAAPLAERGAKVGVLMGTAYLFTE 209 (320)
T ss_pred HHHHHHHHcCCcccccccccEEEEccHHhcch
Confidence 99999999999 7999999998743
No 72
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.35 E-value=1.2e-10 Score=115.89 Aligned_cols=221 Identities=19% Similarity=0.165 Sum_probs=133.2
Q ss_pred eEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-------cc-C-CCceEEEEeec-C
Q 017492 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------ST-G-PGIRFFQLYVY-K 133 (370)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~-~-~~~~~~Qly~~-~ 133 (370)
+++| +..|++.+||+++ .. ...|+.+..++|....++... .+++++. +. . ..|+.++|+.. .
T Consensus 8 ~~lg--iryPii~gpMa~G-is----s~eLVaAvs~AGgLG~lgag~-l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~ 79 (418)
T cd04742 8 EDYG--LRYAYVAGAMARG-IA----SAELVVAMGKAGMLGFFGAGG-LPLDEVEQAIERIQAALGNGEPYGVNLIHSPD 79 (418)
T ss_pred HHhC--CCccEECCcccCC-CC----CHHHHHHHHhCCCeeeecCCC-CCHHHHHHHHHHHHHhccCCCCeEEeeecCCC
Confidence 3455 4689999999832 23 447999999999998887653 4555543 22 2 35888998753 3
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe--cCC-CCCcchhHHhhhhcCC-CCc-cccccccccccCccccccchhhHHHhhhcC
Q 017492 134 DRNVVAQLVRRAERAGFKAIALT--VDT-PRLGRREADIKNRFTL-PPF-LTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~it--vd~-p~~g~r~~d~~~~~~~-p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (370)
+++...+.++...+.|++.+... ++. |.. .+.++ .|+.+ +.+ +...+. .... . +..+..+. .
T Consensus 80 ~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~-~~~r~--~G~~~~~~g~~~~~~~------Viak--V-sr~evAs~-~ 146 (418)
T cd04742 80 EPELEEGLVDLFLRHGVRVVEASAFMQLTPAL-VRYRA--KGLRRDADGRVQIANR------IIAK--V-SRPEVAEA-F 146 (418)
T ss_pred CchhHHHHHHHHHHcCCCEEEeccccCCCcch-hhHHh--cCCcccccccccccce------EEEe--c-CChhhhhh-h
Confidence 44445567788888898876543 111 111 11111 01100 000 000000 0000 0 00011110 1
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcC-ccEEEEccC-CccCCCCccchHHHHHHHHH---Hc------
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAG-AAGIIVSNH-GARQLDYVPATIMALEEVVK---AT------ 277 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG-~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~---~~------ 277 (370)
......+.++++++. ++.|.++|+.+.+.| +|.|++... ||+. +..++...++.+.+ .+
T Consensus 147 f~ppp~~~v~~L~~~--------G~it~~eA~~A~~~g~aD~Ivvq~EAGGH~--g~~~~~~Llp~v~~l~d~v~~~~~~ 216 (418)
T cd04742 147 MSPAPERILKKLLAE--------GKITEEQAELARRVPVADDITVEADSGGHT--DNRPLSVLLPTIIRLRDELAARYGY 216 (418)
T ss_pred cCCCCHHHHHHHHHc--------CCCCHHHHHHHHhCCCCCEEEEcccCCCCC--CCccHHhHHHHHHHHHHHHhhcccc
Confidence 122356678888764 233999999999999 599998742 4543 22344555555544 22
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 278 ~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
..++||++.|||.++.++..++++||++|++|+.|+..
T Consensus 217 ~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat 254 (418)
T cd04742 217 RRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCT 254 (418)
T ss_pred CCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhC
Confidence 12699999999999999999999999999999999864
No 73
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.35 E-value=3.8e-11 Score=117.46 Aligned_cols=227 Identities=18% Similarity=0.163 Sum_probs=138.2
Q ss_pred ceeEcCeeecCceeeccccccccc----CC-hhhHHHHHHHHHcCCceeecCCCCC--------------CH---H---H
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMA----HP-EGEYATARAASAAGTIMTLSSWSTS--------------SV---E---E 116 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~----~~-~~e~~la~aa~~~G~~~~~s~~~~~--------------~~---e---e 116 (370)
..+|.+.++++-|+.|||+..... .+ +..+..-+.-++-|+.+++++.... +. + +
T Consensus 6 P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~ 85 (337)
T PRK13523 6 PYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHK 85 (337)
T ss_pred CeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHHHHH
Confidence 467788999999999999532211 11 2234556666667888877653110 11 1 1
Q ss_pred Hhcc---CCCceEEEEeecCC---------------------------hHHH-------HHHHHHHHHcCCcEEEEecCC
Q 017492 117 VAST---GPGIRFFQLYVYKD---------------------------RNVV-------AQLVRRAERAGFKAIALTVDT 159 (370)
Q Consensus 117 i~~~---~~~~~~~Qly~~~d---------------------------~~~~-------~~~l~ra~~~G~~ai~itvd~ 159 (370)
+.+. .....++||+-... .+.+ .+..++|+++||+.+.||...
T Consensus 86 l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ah 165 (337)
T PRK13523 86 LVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAH 165 (337)
T ss_pred HHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 2221 12456888853111 1112 223356777999999999763
Q ss_pred CCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecC-----
Q 017492 160 PRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVL----- 234 (370)
Q Consensus 160 p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~----- 234 (370)
-. +-+.|--|. .+.+ ++.-+ +... ....|..++++.||+.++.||.+|+..
T Consensus 166 Gy-------Ll~qFlSp~-~N~R------------tD~yG-Gsle---nR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 166 GY-------LINEFLSPL-SNKR------------TDEYG-GSPE---NRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred ch-------HHHHhcCCc-cCCc------------CCCCC-CCHH---HHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 11 112221110 0000 00000 0111 123467889999999999999999863
Q ss_pred ---CHHH----HHHHHHcCccEEEEccCCccC--CCC-ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-C
Q 017492 235 ---TAED----ARIAVQAGAAGIIVSNHGARQ--LDY-VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-A 303 (370)
Q Consensus 235 ---~~~~----a~~a~~aG~d~I~vs~~gg~~--~~~-~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-A 303 (370)
+.++ ++.+.++|+|.|.|+...-.. ... ....++...++++.+ ++||++.|+|++++++.++|+-| |
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~--~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA--NIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc--CCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 4444 567788999999996432110 111 111345667777776 79999999999999999999987 9
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
|+|++||+++.
T Consensus 300 D~V~~gR~~ia 310 (337)
T PRK13523 300 DLIFIGRELLR 310 (337)
T ss_pred ChHHhhHHHHh
Confidence 99999999984
No 74
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.31 E-value=1.4e-10 Score=102.99 Aligned_cols=185 Identities=23% Similarity=0.232 Sum_probs=121.6
Q ss_pred eeecccccccccCChhhHHHHHHHHHcCCceeecCC-CC-------CC---HHHHhccCCCceEEEEeecCChHHHHHHH
Q 017492 74 IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSW-ST-------SS---VEEVASTGPGIRFFQLYVYKDRNVVAQLV 142 (370)
Q Consensus 74 i~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~-~~-------~~---~eei~~~~~~~~~~Qly~~~d~~~~~~~l 142 (370)
|++++|.++.. +.....++.+.+.|+.+..... .. .. ++.+......+.++|++.....+......
T Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 77 (200)
T cd04722 1 VILALLAGGPS---GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAA 77 (200)
T ss_pred CeeeccccCch---HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHH
Confidence 45677765531 2345788888888876544322 10 11 33333333467889998655444444445
Q ss_pred HHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHH
Q 017492 143 RRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQT 222 (370)
Q Consensus 143 ~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~ 222 (370)
++++++|++.+.++..++.. +.+..+.++++++
T Consensus 78 ~~~~~~g~d~v~l~~~~~~~-----------------------------------------------~~~~~~~~~~i~~ 110 (200)
T cd04722 78 AAARAAGADGVEIHGAVGYL-----------------------------------------------AREDLELIRELRE 110 (200)
T ss_pred HHHHHcCCCEEEEeccCCcH-----------------------------------------------HHHHHHHHHHHHH
Confidence 78889999999987654320 1224667889998
Q ss_pred hc-CCcEEEEecCCHHHHHH-HHHcCccEEEEccCCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH
Q 017492 223 IT-KLPILVKGVLTAEDARI-AVQAGAAGIIVSNHGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA 298 (370)
Q Consensus 223 ~~-~~Pv~vK~v~~~~~a~~-a~~aG~d~I~vs~~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~ka 298 (370)
.+ +.|+++|.....+.... +.+.|+|.|.++++.+.+...... ....+..+.+. .++||+++|||.+++++.++
T Consensus 111 ~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pi~~~GGi~~~~~~~~~ 188 (200)
T cd04722 111 AVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG--SKVPVIAGGGINDPEDAAEA 188 (200)
T ss_pred hcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc--CCCCEEEECCCCCHHHHHHH
Confidence 87 89999997643322222 688999999998764433222221 12333333333 37999999999999999999
Q ss_pred HHhCCCEEEEcH
Q 017492 299 LALGASGIFIGR 310 (370)
Q Consensus 299 lalGAd~V~igr 310 (370)
+.+|||+|++||
T Consensus 189 ~~~Gad~v~vgs 200 (200)
T cd04722 189 LALGADGVIVGS 200 (200)
T ss_pred HHhCCCEEEecC
Confidence 999999999996
No 75
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=99.23 E-value=1.1e-09 Score=100.94 Aligned_cols=98 Identities=22% Similarity=0.245 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC--CCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.+.++++++..++|++ ..+.+.++++.+.++|+|+|.++++|-+.. ......++.+.++++.+ ++||++.|||++
T Consensus 108 ~~~i~~~~~~~~i~vi-~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t 184 (221)
T PRK01130 108 AELVKRIKEYPGQLLM-ADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINT 184 (221)
T ss_pred HHHHHHHHhCCCCeEE-EeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCC
Confidence 3456777664467776 457889999999999999998765443221 22344567888888877 799999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~ 314 (370)
++|+.+++++|||+|++|+.++.
T Consensus 185 ~~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 185 PEQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred HHHHHHHHHCCCCEEEEchHhcC
Confidence 99999999999999999998764
No 76
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.21 E-value=2.4e-09 Score=107.26 Aligned_cols=222 Identities=19% Similarity=0.178 Sum_probs=131.6
Q ss_pred eEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh-------ccCC-Cc-eEEEEeecC-
Q 017492 64 TVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA-------STGP-GI-RFFQLYVYK- 133 (370)
Q Consensus 64 ~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~-------~~~~-~~-~~~Qly~~~- 133 (370)
+++| +..|++.+||+++ .. ...|+.+..++|....++.. ..+++++. +..+ ++ +.++|+.+.
T Consensus 13 ~~lg--iryPiiqgpMa~G-iS----s~eLVaAVs~AGgLG~lgag-~l~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~ 84 (444)
T TIGR02814 13 EDYG--VRYAYVAGAMANG-IA----SAELVIAMGRAGILGFFGAG-GLPLEEVEQAIHRIQQALPGGPAYGVNLIHSPS 84 (444)
T ss_pred HHhC--CCCcEECccccCC-CC----CHHHHHHHHhCCceeeeCCC-CCCHHHHHHHHHHHHHhcCCCCceEEEecccCC
Confidence 3455 4679999999832 23 44799999999999888865 34566543 2223 35 889987643
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEe--cC-CCCCcchhHHhhhhcCCC-C-ccccccccccccCccccccchhhHHHhhhcC
Q 017492 134 DRNVVAQLVRRAERAGFKAIALT--VD-TPRLGRREADIKNRFTLP-P-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQI 208 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~it--vd-~p~~g~r~~d~~~~~~~p-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (370)
+.+...+.++.+.+.|++.+... ++ +|.. .+.+. .++... . .+...+ ..... . +..+.... .
T Consensus 85 ~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~-v~~r~--~G~~~~~~g~~~~~~------~Viak--V-sr~~vAs~-f 151 (444)
T TIGR02814 85 DPALEWGLVDLLLRHGVRIVEASAFMQLTPAL-VRYRA--KGLHRDADGRVVIRN------RLIAK--V-SRPEVAEA-F 151 (444)
T ss_pred CcccHHHHHHHHHHcCCCEEEeccccCCCcch-hhhhh--ccccccccccccccc------eEEEe--c-CCHHHHHH-h
Confidence 33334456677778888876543 11 1211 11110 011000 0 000000 00000 0 00111111 0
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCc-cEEEEcc-CCccCCCCccchHHHHHHHHH---Hc------
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGA-AGIIVSN-HGARQLDYVPATIMALEEVVK---AT------ 277 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~-d~I~vs~-~gg~~~~~~~~~~~~l~~i~~---~~------ 277 (370)
.....-+.++.+.+. ++.|+++|+.+.+.|+ |.|++.. .||+. +..++...++.+.+ .+
T Consensus 152 ~~p~p~~~v~~L~~~--------G~it~eEA~~a~~~g~aD~Ivve~EAGGHt--g~~~~~~Llp~i~~lrd~v~~~~~y 221 (444)
T TIGR02814 152 MSPAPAHILQKLLAE--------GRITREEAELARRVPVADDICVEADSGGHT--DNRPLVVLLPAIIRLRDTLMRRYGY 221 (444)
T ss_pred cCCCcHHHHHHHHHc--------CCCCHHHHHHHHhCCCCcEEEEeccCCCCC--CCCcHHHHHHHHHHHHHHHhhcccC
Confidence 111234567777653 2339999999999995 8888863 25543 23355566776643 33
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 278 QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 278 ~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~ 316 (370)
...+||++.|||.++.++..++++|||+|++|+.|+...
T Consensus 222 ~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 222 RKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 126899999999999999999999999999999998643
No 77
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.18 E-value=2.1e-09 Score=105.64 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=75.0
Q ss_pred CCccHHHHHHHHHhcCC--cEEEEecC--------CHHH----HHHHHHcC-ccEEEEccCCccCC----------CCcc
Q 017492 210 RSLSWKDVKWLQTITKL--PILVKGVL--------TAED----ARIAVQAG-AAGIIVSNHGARQL----------DYVP 264 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~--Pv~vK~v~--------~~~~----a~~a~~aG-~d~I~vs~~gg~~~----------~~~~ 264 (370)
..+..++++.+|+.++. ||.+|... +.++ ++.+.++| +|.|.||...-... ....
T Consensus 191 ~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~ 270 (343)
T cd04734 191 MRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPP 270 (343)
T ss_pred hHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCc
Confidence 35678899999999854 55555542 3333 56778898 89999963211110 0111
Q ss_pred -chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 265 -ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 265 -~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
..++....+++.+ ++||+++|||++.+++.++++.| ||+|++||+++.
T Consensus 271 ~~~~~~~~~ik~~~--~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 271 GPFLPLAARIKQAV--DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred chhHHHHHHHHHHc--CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 1356667777777 79999999999999999999976 999999999985
No 78
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.18 E-value=1.7e-09 Score=105.88 Aligned_cols=104 Identities=22% Similarity=0.228 Sum_probs=79.7
Q ss_pred CCCccHHHHHHHHHhc--CCcEEEEec--------CCHHH----HHHHHHcCccEEEEccCCcc--CC-CCcc-chHHHH
Q 017492 209 DRSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGAR--QL-DYVP-ATIMAL 270 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~--~~Pv~vK~v--------~~~~~----a~~a~~aG~d~I~vs~~gg~--~~-~~~~-~~~~~l 270 (370)
...+..+.++.+|+.+ +.||.+|.. .+.++ ++.+.+.|+|.|.|+.++.+ +. ...+ ...+.+
T Consensus 203 r~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 282 (336)
T cd02932 203 RMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFA 282 (336)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHH
Confidence 4456789999999999 789999964 23444 45677899999999754322 11 1111 124566
Q ss_pred HHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 271 EEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 271 ~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.++++.+ ++||+++|||.+++++.++|+.| ||+|++||+++.
T Consensus 283 ~~ir~~~--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 283 ERIRQEA--GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHhhC--CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 7777776 79999999999999999999998 999999999985
No 79
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=99.14 E-value=3.9e-09 Score=97.18 Aligned_cols=99 Identities=23% Similarity=0.259 Sum_probs=79.6
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.++++++..++|+++ .+.+++++..+.++|+|+|.+.++|-+. .....+.++.+.++++.+ ++||++.|||+
T Consensus 111 ~~~~i~~~~~~g~~~iiv-~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~ 187 (219)
T cd04729 111 LAELIKRIHEEYNCLLMA-DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRIN 187 (219)
T ss_pred HHHHHHHHHHHhCCeEEE-ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCC
Confidence 455677887766678776 4678999999999999999776554322 122345678888888876 79999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+++|+.+++++|||+|++|++++.
T Consensus 188 ~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 188 SPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred CHHHHHHHHHCCCCEEEEchHHhC
Confidence 999999999999999999999874
No 80
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.14 E-value=7.7e-10 Score=107.79 Aligned_cols=102 Identities=24% Similarity=0.235 Sum_probs=79.9
Q ss_pred CccHHHHHHHHHhc--CCcEEEEecC--------CHHH----HHHHHHcCccEEEEccCCccCCCC--------ccchHH
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQLDY--------VPATIM 268 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v~--------~~~~----a~~a~~aG~d~I~vs~~gg~~~~~--------~~~~~~ 268 (370)
.+..+.++.+|+.+ ++||.+|... +.++ ++.+.++|+|+|.+++....+... ....++
T Consensus 192 r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ 271 (327)
T cd02803 192 RFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLE 271 (327)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHH
Confidence 45788999999998 7899999862 3344 677889999999997643322111 122445
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q 017492 269 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 314 (370)
Q Consensus 269 ~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-GAd~V~igr~~l~ 314 (370)
.+..+++.+ ++||+++|||++.+++.++++. |||.|++||+++.
T Consensus 272 ~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 272 LAEKIKKAV--KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 677777776 7999999999999999999998 6999999999985
No 81
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.08 E-value=8.7e-09 Score=101.62 Aligned_cols=102 Identities=18% Similarity=0.161 Sum_probs=75.5
Q ss_pred CCccHHHHHHHHHhc--CCcEEEEecC------------CHHH----HHHHHHcCccEEEEccCCc-cCCCCccchHHHH
Q 017492 210 RSLSWKDVKWLQTIT--KLPILVKGVL------------TAED----ARIAVQAGAAGIIVSNHGA-RQLDYVPATIMAL 270 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~--~~Pv~vK~v~------------~~~~----a~~a~~aG~d~I~vs~~gg-~~~~~~~~~~~~l 270 (370)
..|..++++.||+.+ +.||.+|... ++++ ++.+.++|+|.|.++...- .+... ...+...
T Consensus 194 ~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~-~~~~~~~ 272 (361)
T cd04747 194 SRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFE-GSELNLA 272 (361)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcC-ccchhHH
Confidence 356789999999998 4899999862 2333 4556789999999975311 11111 1133455
Q ss_pred HHHHHHccCCCcEEEecCC------------------CCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 271 EEVVKATQGRIPVFLDGGV------------------RRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 271 ~~i~~~~~~~ipvi~~GGI------------------~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
..+++.+ ++||+++|+| ++++++.++|+-| ||+|++||+++.
T Consensus 273 ~~~k~~~--~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 273 GWTKKLT--GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred HHHHHHc--CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 6666666 7999999999 6999999999977 999999999885
No 82
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.05 E-value=3.9e-09 Score=103.43 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=78.5
Q ss_pred CCccHHHHHHHHHhcCC-cEEEEecC-----------CHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHH
Q 017492 210 RSLSWKDVKWLQTITKL-PILVKGVL-----------TAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~-Pv~vK~v~-----------~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i 273 (370)
..|..+.++.+|+.++. ||.+|... +.++ ++.+.+.|+|.|.|+.. ..........++...++
T Consensus 202 ~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~i 280 (338)
T cd02933 202 ARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP-RVAGNPEDQPPDFLDFL 280 (338)
T ss_pred hhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecC-CCCCcccccchHHHHHH
Confidence 35678899999999854 89999852 3333 57788899999999642 22111233455677788
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 274 ~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++++ ++||+++|||+ ++++.++|+.| ||+|++||+++.
T Consensus 281 k~~~--~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 281 RKAF--KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHHc--CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 8887 89999999997 99999999987 999999999875
No 83
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=99.04 E-value=1.1e-08 Score=100.93 Aligned_cols=234 Identities=17% Similarity=0.210 Sum_probs=149.8
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCC-------HH-HHhccC--CCceEEEEeecCChHHHHHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSS-------VE-EVASTG--PGIRFFQLYVYKDRNVVAQL 141 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~-------~e-ei~~~~--~~~~~~Qly~~~d~~~~~~~ 141 (370)
--.++||.+.. ||+.++|.|.++|+..+.|+|+-+. .| .+.+.. ...+.+||-. ...+...+.
T Consensus 265 ~K~~LaPLTTv------GNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag-~~pdt~~ka 337 (614)
T KOG2333|consen 265 DKKYLAPLTTV------GNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAG-SKPDTAAKA 337 (614)
T ss_pred cceeecccccc------CCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEecc-CChHHHHHH
Confidence 45789998654 5889999999999999999986432 11 122222 2578899974 344444444
Q ss_pred HHHH-HHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHH
Q 017492 142 VRRA-ERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (370)
Q Consensus 142 l~ra-~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 220 (370)
++.+ +...++.|.||++||.. +- | + . |.+..+.. .|......++..
T Consensus 338 aq~i~e~~~VDFIDlN~GCPID------lv--y--------~-----------q----G~GsALl~--rp~rl~~~l~~m 384 (614)
T KOG2333|consen 338 AQVIAETCDVDFIDLNMGCPID------LV--Y--------R-----------Q----GGGSALLN--RPARLIRILRAM 384 (614)
T ss_pred HHHHHhhcceeeeeccCCCChh------ee--e--------c-----------c----CCcchhhc--CcHHHHHHHHHH
Confidence 4433 34679999999999962 11 0 0 0 11122221 222234455555
Q ss_pred HHhc-CCcEEEEecCC--------HHHHHHHH-HcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 221 QTIT-KLPILVKGVLT--------AEDARIAV-QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 221 r~~~-~~Pv~vK~v~~--------~~~a~~a~-~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.... .+||.||+... .+-...+. +.|+++|++.+...-|.++-.+.|+.+.++.+.+...+|+|+.|.|-
T Consensus 385 ~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~ 464 (614)
T KOG2333|consen 385 NAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECADKAKSALPLIGNGDIL 464 (614)
T ss_pred HHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHHHhcccCceeEecCccc
Confidence 5555 46999998632 12234444 89999999933323366778889999999999886669999999999
Q ss_pred CHHHHHHHHHhC--CCEEEEcH-----HHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 291 RGTDVFKALALG--ASGIFIGR-----PVVYSLAAEGE---KGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 291 ~~~dv~kalalG--Ad~V~igr-----~~l~~~~~~G~---~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+.+|-.+.+..+ .+.||||| ||+|.-.-.-. ..-.+-++.|++=.+--|+..|..
T Consensus 465 S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSD 529 (614)
T KOG2333|consen 465 SWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSD 529 (614)
T ss_pred cHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCc
Confidence 999988888866 89999999 67764221100 001123455555555556666643
No 84
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.04 E-value=1.5e-08 Score=89.80 Aligned_cols=96 Identities=21% Similarity=0.260 Sum_probs=73.6
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.++++++.. -+++--+.+.|++..+.++|+|.|-....|.+. .. ..|.++.+.++++. .+|||+.|+|.
T Consensus 81 l~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~---~~pvIaEGri~ 154 (192)
T PF04131_consen 81 LEELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA---DVPVIAEGRIH 154 (192)
T ss_dssp HHHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT---TSEEEEESS--
T ss_pred HHHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC---CCcEeecCCCC
Confidence 355789999987 556688999999999999999999876666542 22 56788899988763 79999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+++++.+++.+||++|.+|++.-.
T Consensus 155 tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 155 TPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred CHHHHHHHHhcCCeEEEECcccCC
Confidence 999999999999999999998743
No 85
>KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism]
Probab=99.03 E-value=7.5e-10 Score=105.12 Aligned_cols=255 Identities=16% Similarity=0.166 Sum_probs=166.6
Q ss_pred ecccCCCCCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHH--Hhcc-------
Q 017492 50 PRILIDVSKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEE--VAST------- 120 (370)
Q Consensus 50 pr~l~~~~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~ee--i~~~------- 120 (370)
|..|..++++|.+++.-|++.+.|+.++.-. |.....+.+-|-..|-++.+.-. ..+++ |...
T Consensus 92 ~k~~~~l~~ie~~vd~~G~k~~npf~~~s~P------p~t~~~lm~raf~~gwg~l~~kt--~~ld~~kV~nv~prvar~ 163 (471)
T KOG1799|consen 92 LKALLYLKSIEELVDWDGQKPANPFHQKSKP------PPTIAELMDRAFPSGWGYLEQKT--KILDENKVRNVEPRVARS 163 (471)
T ss_pred hhhhcchhhhhhhccccCccCCCccccCCCC------CCccHHHHHhhhhcccchhheee--eecchhhheecccceeec
Confidence 4555667889999999999999999886521 22244677777777777665321 11110 0000
Q ss_pred -------CC-CceEEEE--eec-----------------------------CChHHHHHHHHHHHHcCCcEEEEecCCCC
Q 017492 121 -------GP-GIRFFQL--YVY-----------------------------KDRNVVAQLVRRAERAGFKAIALTVDTPR 161 (370)
Q Consensus 121 -------~~-~~~~~Ql--y~~-----------------------------~d~~~~~~~l~ra~~~G~~ai~itvd~p~ 161 (370)
.| .+.|..+ ... .+.....++..+.+++|++.+.+|+.||.
T Consensus 164 ~t~~~~~~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscph 243 (471)
T KOG1799|consen 164 PTKRSCFIPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPH 243 (471)
T ss_pred cCCCCccccCCCccchhhhhccchHHHHHHHHHHhcccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCC
Confidence 00 0111100 000 01223345666777778888888777775
Q ss_pred CcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHH---
Q 017492 162 LGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAE--- 237 (370)
Q Consensus 162 ~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~--- 237 (370)
. ++. +.+ -.++ .++..+-|...|++....+|++-|+..+.+
T Consensus 244 g------------m~ergmg---------------------la~g--q~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~r 288 (471)
T KOG1799|consen 244 G------------MCERGMG---------------------LALG--QCPIVDCEVCGWINAKATIPMVSKMTPNITDKR 288 (471)
T ss_pred C------------Ccccccc---------------------ceec--cChhhhHHHhhhhhhccccccccccCCCccccc
Confidence 2 011 011 0111 245566778999999999999999876543
Q ss_pred -HHHHHHHcCccEEEEccC------------------------CccCCC-CccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 238 -DARIAVQAGAAGIIVSNH------------------------GARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 238 -~a~~a~~aG~d~I~vs~~------------------------gg~~~~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.|+.+.+.|+.+|...|. ||++.. ..|-.+..+..|.+.+. ..|+.+.|||.+
T Consensus 289 evar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~-~F~l~~~GGvEt 367 (471)
T KOG1799|consen 289 EVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMK-EFSLSGIGGVET 367 (471)
T ss_pred ccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhh-cCccccccCccc
Confidence 467778889999887552 111111 11334455666666653 789999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhhhccccee
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIV 356 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~ 356 (370)
+.|.+.+|.+|++.|++++..+. +|.. .++.+-.||+..|.+.|.+++++++++.|.
T Consensus 368 ~~~~~~Fil~Gs~~vQVCt~V~~----~~~~----~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL~ 424 (471)
T KOG1799|consen 368 GYDAAEFILLGSNTVQVCTGVMM----HGYG----HVKTLCAELKDFMKQHNFSTIEEFRGHSLQ 424 (471)
T ss_pred ccchhhHhhcCCcHhhhhhHHHh----cCcc----hHHHHHHHHHHHHHHcCchhhhhccCcchh
Confidence 99999999999999999998864 4554 457888999999999999999999988654
No 86
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.01 E-value=4e-08 Score=106.24 Aligned_cols=101 Identities=21% Similarity=0.183 Sum_probs=76.0
Q ss_pred CccHHHHHHHHHhc--CCcEEEEecC--------CHHH----HHHHHHcCccEEEEccCCccCC----CCcc-chHHHHH
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQL----DYVP-ATIMALE 271 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v~--------~~~~----a~~a~~aG~d~I~vs~~gg~~~----~~~~-~~~~~l~ 271 (370)
.|..++++.||+.+ +.||.+|+.. +.++ ++.+.++|+|.|.|+.. ++.. ..++ .......
T Consensus 602 r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g-~~~~~~~~~~~~~~~~~~~~ 680 (765)
T PRK08255 602 RYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSG-QVSKDEKPVYGRMYQTPFAD 680 (765)
T ss_pred HHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCC-CCCcCCCCCcCccccHHHHH
Confidence 46788999999997 4899999863 2333 57788999999999642 2110 1111 1123445
Q ss_pred HHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 272 EVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 272 ~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++++.+ ++||+++|+|++++++.++|+.| ||+|++||+++.
T Consensus 681 ~ik~~~--~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 681 RIRNEA--GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHc--CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 667766 79999999999999999999976 999999999985
No 87
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.00 E-value=2.3e-08 Score=98.64 Aligned_cols=103 Identities=21% Similarity=0.175 Sum_probs=75.8
Q ss_pred CCccHHHHHHHHHhcC--CcEEEEec--------CCHHH----HHHHHHcCccEEEEcc--CCccCCC----Cccc-hHH
Q 017492 210 RSLSWKDVKWLQTITK--LPILVKGV--------LTAED----ARIAVQAGAAGIIVSN--HGARQLD----YVPA-TIM 268 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~--~Pv~vK~v--------~~~~~----a~~a~~aG~d~I~vs~--~gg~~~~----~~~~-~~~ 268 (370)
..+..+.++.+|+.++ .||.+|.. .+.++ ++.+.++|+|.|.||. |..+... .... ...
T Consensus 187 ~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~ 266 (353)
T cd02930 187 MRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAW 266 (353)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHH
Confidence 4567889999999984 56777764 24444 5677889999999974 2222111 1111 233
Q ss_pred HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 269 ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 269 ~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
...++++.+ ++||+++|+|++..++.++++.| +|+|++||+++.
T Consensus 267 ~~~~ik~~v--~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 267 ATAKLKRAV--DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHHhC--CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 456777776 89999999999999999999987 999999999985
No 88
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.00 E-value=3.7e-09 Score=104.27 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=76.7
Q ss_pred CCccHHHHHHHHHhcC------CcEEEEecC--------CHHH----HHHHHHcCccEEEEccCCccCC--CCccchHHH
Q 017492 210 RSLSWKDVKWLQTITK------LPILVKGVL--------TAED----ARIAVQAGAAGIIVSNHGARQL--DYVPATIMA 269 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~------~Pv~vK~v~--------~~~~----a~~a~~aG~d~I~vs~~gg~~~--~~~~~~~~~ 269 (370)
..|..++++.+|+.++ .||.+|... +.++ ++.+.++|+|+|.|+.++.+.. .........
T Consensus 194 ~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~ 273 (353)
T cd04735 194 MRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTI 273 (353)
T ss_pred HHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHH
Confidence 3567889999999874 466666542 3333 5678899999999976432211 111123445
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 270 l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+..+++.+..++||++.|||++++++.++++.|||+|++||+++.
T Consensus 274 ~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 274 MELVKERIAGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 556666554479999999999999999999999999999999985
No 89
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.98 E-value=7.8e-09 Score=101.38 Aligned_cols=104 Identities=23% Similarity=0.295 Sum_probs=78.6
Q ss_pred CCCccHHHHHHHHHhc--CCcEEEEec--------CCHHH----HHHHHHcCccEEEEccCCccCCCCc---------cc
Q 017492 209 DRSLSWKDVKWLQTIT--KLPILVKGV--------LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---------PA 265 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~--~~Pv~vK~v--------~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~---------~~ 265 (370)
...|..+.|+.||+.+ +.||.+|.. .+.++ ++.+.++|+|.|.|+.....+.... +.
T Consensus 198 R~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 277 (338)
T cd04733 198 RARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE 277 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccc
Confidence 3457889999999998 489999985 35444 5677889999999964211111110 01
Q ss_pred --hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 266 --TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 266 --~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.++...++++.+ ++||+++|+|.+.+++.++++.| ||.|++||+++.
T Consensus 278 ~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 278 AYFLEFAEKIRKVT--KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hhhHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 134556777777 89999999999999999999987 999999999984
No 90
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.96 E-value=9.5e-08 Score=90.11 Aligned_cols=157 Identities=17% Similarity=0.232 Sum_probs=101.9
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|.+.+.+.++...+.|++.|.+. .|.+ -|- - +.+..++ +....+......+
T Consensus 20 ~P~~~~~~~~~~~l~~~Gad~iElG--iPfs------------DP~--a-------DGpvIq~----a~~~al~~G~~~~ 72 (256)
T TIGR00262 20 DPTLETSLEIIKTLIEAGADALELG--VPFS------------DPL--A-------DGPTIQA----ADLRALRAGMTPE 72 (256)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEC--CCCC------------CCC--C-------cCHHHHH----HHHHHHHcCCCHH
Confidence 3467888899999999999998874 3431 121 0 0000111 1111222111222
Q ss_pred ccHHHHHHHHHh-cCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCc---------cC
Q 017492 212 LSWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ 259 (370)
Q Consensus 212 ~~~~~i~~ir~~-~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg---------~~ 259 (370)
..++.++++|+. .++|+++-+..++ +.++.+.++|+|+|.+-- +|- +.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 357789999977 6899886666665 347889999999998831 110 00
Q ss_pred -------------------CC--Cc------cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 260 -------------------LD--YV------PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 260 -------------------~~--~~------~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.. +| +...+.+.++++.. +.||+++|||++++++.+++..|||+|.+|+++
T Consensus 153 ~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 153 DERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 00 11 12334566666654 679999999999999999999999999999999
Q ss_pred HHHHH
Q 017492 313 VYSLA 317 (370)
Q Consensus 313 l~~~~ 317 (370)
+.-+.
T Consensus 231 v~~~~ 235 (256)
T TIGR00262 231 VKIIE 235 (256)
T ss_pred HHHHH
Confidence 87553
No 91
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.94 E-value=1.6e-08 Score=100.79 Aligned_cols=104 Identities=17% Similarity=0.248 Sum_probs=77.6
Q ss_pred CCCccHHHHHHHHHhc--CCcEEEEecC----------------------CHHH----HHHHHHcCccEEEEccCCccCC
Q 017492 209 DRSLSWKDVKWLQTIT--KLPILVKGVL----------------------TAED----ARIAVQAGAAGIIVSNHGARQL 260 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~--~~Pv~vK~v~----------------------~~~~----a~~a~~aG~d~I~vs~~gg~~~ 260 (370)
...|..++++.||+.+ +.||.+|... +.++ ++.+.++|+|.|.|+.....+.
T Consensus 200 R~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~ 279 (382)
T cd02931 200 RLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW 279 (382)
T ss_pred HhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence 3457889999999998 5799999752 2344 5677789999999964221111
Q ss_pred CC-------ccch-HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 261 DY-------VPAT-IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 261 ~~-------~~~~-~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.. .... +.....+++.+ ++||+++|||++++++.++|+.| ||+|++||+++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 280 YWNHPPMYQKKGMYLPYCKALKEVV--DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred ccccCCccCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 11 1111 34556677776 79999999999999999999987 999999999985
No 92
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.94 E-value=6.6e-08 Score=88.66 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=119.6
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCC-CC-ccccccccccccCccccccchhhHH
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTL-PP-FLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~-p~-~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
..+-+....+.+...++++.+.+.|+..+.||+++|..-.-.+.++..|.- |. .+...++.. ..........|...
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~--~~~~~~a~~aGA~F 91 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLD--AVTARLAILAGAQF 91 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCC--HHHHHHHHHcCCCE
Confidence 345566677889999999999999999999999999866666777666531 21 122332211 00111111122222
Q ss_pred HhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+ .|.++.+.+++.++ .++|++ -|+.|+.++..+.++|+|.|.++-.+ ......+..++..+ ..+|
T Consensus 92 iv----sP~~~~~v~~~~~~-~~i~~i-PG~~T~~E~~~A~~~Gad~vklFPa~-------~~G~~~ik~l~~~~-p~ip 157 (213)
T PRK06552 92 IV----SPSFNRETAKICNL-YQIPYL-PGCMTVTEIVTALEAGSEIVKLFPGS-------TLGPSFIKAIKGPL-PQVN 157 (213)
T ss_pred EE----CCCCCHHHHHHHHH-cCCCEE-CCcCCHHHHHHHHHcCCCEEEECCcc-------cCCHHHHHHHhhhC-CCCE
Confidence 33 34556666777554 588875 78999999999999999999995311 11234566665555 3699
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
+++.|||. .+++.+++++||++|.+|+.++..
T Consensus 158 ~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~ 189 (213)
T PRK06552 158 VMVTGGVN-LDNVKDWFAAGADAVGIGGELNKL 189 (213)
T ss_pred EEEECCCC-HHHHHHHHHCCCcEEEEchHHhCc
Confidence 99999997 599999999999999999998643
No 93
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.93 E-value=1.7e-07 Score=88.68 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=100.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++...+.|++.|.+. -|.+ -|- - +.+..++ +....+......+
T Consensus 25 ~P~~~~~~~~~~~l~~~Gad~iElG--iPfS------------DP~--a-------DGpvIq~----a~~rAL~~g~~~~ 77 (263)
T CHL00200 25 DPDIVITKKALKILDKKGADIIELG--IPYS------------DPL--A-------DGPIIQE----ASNRALKQGINLN 77 (263)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC--CCCC------------CCC--c-------cCHHHHH----HHHHHHHcCCCHH
Confidence 3467888999999999999998874 3421 121 0 0001111 1112222212223
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCc---------cC-
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA---------RQ- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg---------~~- 259 (370)
..++.++++|+..++|+++-+..++ +..+.+.++|+|++.+-. ||= +.
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~ 157 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSK 157 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCH
Confidence 3678899999878899877665443 347889999999999841 110 00
Q ss_pred ------------------C--CCcc-----c-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ------------------L--DYVP-----A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ------------------~--~~~~-----~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
. -+|. . ..+.+..+++.. +.||.+.+||++++++.+....|||+|.+|++++
T Consensus 158 eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 158 SRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0 0111 1 112344444443 8999999999999999999999999999999998
Q ss_pred HHHH
Q 017492 314 YSLA 317 (370)
Q Consensus 314 ~~~~ 317 (370)
.-+.
T Consensus 236 ~~i~ 239 (263)
T CHL00200 236 QILL 239 (263)
T ss_pred HHHH
Confidence 6543
No 94
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.90 E-value=4.6e-08 Score=89.87 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
..+.+.++++.+..++|+++.|||.+++|+.+++.+||++|.+|++++.
T Consensus 158 ~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 158 DLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred CHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 3456677766543478999999999999999999999999999999875
No 95
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.89 E-value=1e-07 Score=86.96 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=113.7
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017492 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (370)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (370)
+=+....+.+...+.++.+.+.|++.+.+|.+.|..-...+.++..+.-+-.+...++... .........+....++
T Consensus 13 ~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~--~~~~~a~~aGA~fivs- 89 (206)
T PRK09140 13 IAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSP--EQVDRLADAGGRLIVT- 89 (206)
T ss_pred EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCH--HHHHHHHHcCCCEEEC-
Confidence 3445567888888999999999999999999988654455666666542222233222110 0000001111111222
Q ss_pred cCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEe
Q 017492 207 QIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLD 286 (370)
Q Consensus 207 ~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~ 286 (370)
|.++.+.++..+ ..+.|++ -++.+++++..+.+.|+|+|.++-. .....+.+..+++.++.++|+++.
T Consensus 90 ---p~~~~~v~~~~~-~~~~~~~-~G~~t~~E~~~A~~~Gad~vk~Fpa-------~~~G~~~l~~l~~~~~~~ipvvai 157 (206)
T PRK09140 90 ---PNTDPEVIRRAV-ALGMVVM-PGVATPTEAFAALRAGAQALKLFPA-------SQLGPAGIKALRAVLPPDVPVFAV 157 (206)
T ss_pred ---CCCCHHHHHHHH-HCCCcEE-cccCCHHHHHHHHHcCCCEEEECCC-------CCCCHHHHHHHHhhcCCCCeEEEE
Confidence 233445555544 4577766 4489999999999999999998431 122356677776665336999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
||| +.+++...+++||++|.+++.++.
T Consensus 158 GGI-~~~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 158 GGV-TPENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred CCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence 999 779999999999999999999864
No 96
>PLN02591 tryptophan synthase
Probab=98.86 E-value=3.8e-07 Score=85.51 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=100.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|.+.+.++++...+.|++.|.+. -|.+ -|- - +.+..+. +....+.......
T Consensus 12 ~P~~e~~~~~~~~l~~~Gad~iElG--iPfS------------DP~--a-------DGpvIq~----a~~rAL~~G~~~~ 64 (250)
T PLN02591 12 DPDLDTTAEALRLLDACGADVIELG--VPYS------------DPL--A-------DGPVIQA----AATRALEKGTTLD 64 (250)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC--CCCC------------CCc--c-------cCHHHHH----HHHHHHHcCCCHH
Confidence 3467888899999999999998874 3421 121 0 0001111 1112222212223
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCc------------
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGA------------ 257 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg------------ 257 (370)
-.++.++++|+..++|+++-+..++ +..+.+.++|+|++.+-. ||=
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~ 144 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPT 144 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCH
Confidence 3678899999878899887665443 337888999999998831 110
Q ss_pred -c------------------CCCC---c-cchH-HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 258 -R------------------QLDY---V-PATI-MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 258 -~------------------~~~~---~-~~~~-~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
| ...+ . +..+ +.+.++++. .++||++..||++++|+.+++..|||+|.+|++++
T Consensus 145 ~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 145 ERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEV--TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc--CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence 0 0001 1 1222 335666654 38999999999999999999999999999999998
Q ss_pred HHHH
Q 017492 314 YSLA 317 (370)
Q Consensus 314 ~~~~ 317 (370)
.-+.
T Consensus 223 k~i~ 226 (250)
T PLN02591 223 KALG 226 (250)
T ss_pred Hhhh
Confidence 7543
No 97
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=98.82 E-value=1.2e-06 Score=86.64 Aligned_cols=99 Identities=14% Similarity=-0.020 Sum_probs=71.7
Q ss_pred CccHHHHHHHHHhcC-CcEEEEec-----------CCHHH-----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHH
Q 017492 211 SLSWKDVKWLQTITK-LPILVKGV-----------LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEV 273 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~-~Pv~vK~v-----------~~~~~-----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i 273 (370)
.|..|+++.||+.++ -+|.+|+. .+.++ ++.+.+.|+|+|.|+..... ...+-.......+
T Consensus 210 Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~--~~~~~~~~~~~~i 287 (362)
T PRK10605 210 RLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWA--GGEPYSDAFREKV 287 (362)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccccc--CCccccHHHHHHH
Confidence 367889999999984 35888863 23344 46677889999999852110 0111122334566
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 274 VKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 274 ~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++.+ ++||++.|++ +++.+.++|+-| ||+|++||+++.
T Consensus 288 k~~~--~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 288 RARF--HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHHC--CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 6666 7899999997 899999999998 999999999985
No 98
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.78 E-value=9.8e-07 Score=83.25 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=98.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++...+.|++.|.+. .|.+ -|- - +.+..+. +....+......+
T Consensus 22 ~P~~~~~~~~~~~l~~~Gad~iElG--iPfS------------DP~--a-------DGpvIq~----a~~~AL~~G~~~~ 74 (258)
T PRK13111 22 DPDLETSLEIIKALVEAGADIIELG--IPFS------------DPV--A-------DGPVIQA----ASLRALAAGVTLA 74 (258)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC--CCCC------------CCc--c-------cCHHHHH----HHHHHHHcCCCHH
Confidence 4567888899999999999998874 3431 121 0 0000111 1111222111222
Q ss_pred ccHHHHHHHH-HhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc--------C-
Q 017492 212 LSWKDVKWLQ-TITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR--------Q- 259 (370)
Q Consensus 212 ~~~~~i~~ir-~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~--------~- 259 (370)
-.++.++++| +..++|+++-+..++ +..+.+.++|+|++.+-. ||=. .
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~ 154 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTT 154 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 3567889998 446889876665432 347888899999998831 1100 0
Q ss_pred -------------------C--CCc-----cc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 260 -------------------L--DYV-----PA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 260 -------------------~--~~~-----~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
. -+| +. ..+.+.++++.. ++||++.+||++++|+.+++.. ||+|.+|+++
T Consensus 155 ~eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSai 231 (258)
T PRK13111 155 DERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSAL 231 (258)
T ss_pred HHHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHH
Confidence 0 011 11 234667777654 7999999999999999998875 9999999999
Q ss_pred HHHHH
Q 017492 313 VYSLA 317 (370)
Q Consensus 313 l~~~~ 317 (370)
+..+.
T Consensus 232 v~~~~ 236 (258)
T PRK13111 232 VKIIE 236 (258)
T ss_pred HHHHH
Confidence 87654
No 99
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.76 E-value=2.7e-07 Score=85.55 Aligned_cols=102 Identities=25% Similarity=0.429 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC---------------Cc-c---CC-----------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GA-R---QL----------- 260 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~---------------gg-~---~~----------- 260 (370)
..++.++++++.+++|+++.+ +.++++++.+.+.|+|.|++... |. + .+
T Consensus 60 ~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~ 139 (234)
T cd04732 60 VNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKG 139 (234)
T ss_pred CCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECC
Confidence 468889999999999999976 58899999999999999987521 11 0 00
Q ss_pred -------------------------------C--CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 017492 261 -------------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 261 -------------------------------~--~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ 307 (370)
+ ...+.++.+.++++.. ++||++.|||++.+|+.+++..||++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~ 217 (234)
T cd04732 140 WLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVI 217 (234)
T ss_pred CeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 0 0113456677777665 7999999999999999999999999999
Q ss_pred EcHHHHHH
Q 017492 308 IGRPVVYS 315 (370)
Q Consensus 308 igr~~l~~ 315 (370)
+||.++.+
T Consensus 218 vg~~~~~~ 225 (234)
T cd04732 218 VGKALYEG 225 (234)
T ss_pred EeHHHHcC
Confidence 99999763
No 100
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.73 E-value=2e-07 Score=87.53 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC-----------------------C-------Cc
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-----------------------D-------YV 263 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~-----------------------~-------~~ 263 (370)
.+.+..+|+.++.|++ -.+.+.++|.++.+.|+|.|-...+|++.- + ..
T Consensus 101 ~~~~~~iK~~~~~l~M-AD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~ 179 (283)
T cd04727 101 DEEHHIDKHKFKVPFV-CGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEI 179 (283)
T ss_pred HHHHHHHHHHcCCcEE-ccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhccc
Confidence 4567888888877764 778999999999999999998876665532 0 12
Q ss_pred cchHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 264 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 264 ~~~~~~l~~i~~~~~~~ipvi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.|.++++.. ++||+ +.|||.+++++.+++.+||++|++|++++.
T Consensus 180 ~~d~elLk~l~~~~--~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 180 QAPYELVKETAKLG--RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred CCCHHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 35678888888876 79997 999999999999999999999999999874
No 101
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.72 E-value=4.1e-07 Score=86.00 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.++...++.+.++..+++++.|||.+++|+.+++.+|||+|.+|++++.
T Consensus 197 d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 197 DLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred CHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 3555666666554457999999999999999999999999999999875
No 102
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.69 E-value=1.7e-06 Score=81.05 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=97.8
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.+++.+++|++.+-+.+ |.. -|. - +.+..+ +.....+........
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--Pfs------------dPv--~-------DG~~I~----~a~~~al~~g~~~~~ 63 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFS------------DPV--A-------DGPVIQ----AASERALANGVTLKD 63 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCC------------CCC--C-------CCHHHH----HHHHHHHHcCCCHHH
Confidence 3567788899999999999987754 532 110 0 000000 001111221112234
Q ss_pred cHHHHHHHHHhcCCcEEEEecCC-------HHHHHHHHHcCccEEEEcc---------------CCc---------cC--
Q 017492 213 SWKDVKWLQTITKLPILVKGVLT-------AEDARIAVQAGAAGIIVSN---------------HGA---------RQ-- 259 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~-------~~~a~~a~~aG~d~I~vs~---------------~gg---------~~-- 259 (370)
.++.++++|+..++|+++-.-.+ .+.++.+.++|+|+|++-. +|- +.
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~ 143 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDE 143 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHH
Confidence 67889999988889977643334 3347888999999999821 110 00
Q ss_pred ---------C-----------CCc-----cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 260 ---------L-----------DYV-----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 260 ---------~-----------~~~-----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
. .++ ....+.+.++++.. ++||+++|||++.+++.++... ||+|.+|++++.
T Consensus 144 ~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~--~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 144 RIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT--DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred HHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC--CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 0 011 11234566666543 8999999999999999999889 999999999987
Q ss_pred HHH
Q 017492 315 SLA 317 (370)
Q Consensus 315 ~~~ 317 (370)
-+.
T Consensus 221 ~~~ 223 (242)
T cd04724 221 IIE 223 (242)
T ss_pred HHH
Confidence 553
No 103
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=3.2e-06 Score=75.55 Aligned_cols=176 Identities=19% Similarity=0.184 Sum_probs=113.7
Q ss_pred cccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc---cCCCceEEEE----eecCChH--HHHHHHHHHHHcCCc
Q 017492 81 MQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS---TGPGIRFFQL----YVYKDRN--VVAQLVRRAERAGFK 151 (370)
Q Consensus 81 ~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~---~~~~~~~~Ql----y~~~d~~--~~~~~l~ra~~~G~~ 151 (370)
+..|..++.-.++|+||.+.|....=.+ ++++|.+ ... ..++-| |.+.+.- -+.+.++...++|++
T Consensus 26 ~~pl~~~~iv~~mA~Aa~~gGAvgiR~~----gv~dIkai~~~v~-vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~ 100 (229)
T COG3010 26 GEPLDSPEIVAAMALAAEQGGAVGIRIE----GVEDIKAIRAVVD-VPIIGIIKRDYPDSPVRITPTLKEVDALAEAGAD 100 (229)
T ss_pred CCCCcchhHHHHHHHHHHhCCcceEeec----chhhHHHHHhhCC-CCeEEEEecCCCCCCceecccHHHHHHHHHCCCc
Confidence 3334445455689999999988754433 3444443 221 112222 2222221 235566677788988
Q ss_pred EEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH-HHHHHHHhcCCcEEE
Q 017492 152 AIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK-DVKWLQTITKLPILV 230 (370)
Q Consensus 152 ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~i~~ir~~~~~Pv~v 230 (370)
.|.+ |+.- |+| | +. +.+ .++. .+...-+.+
T Consensus 101 IIA~--DaT~---R~R--------P--------------------------------~~--~~~~~i~~--~k~~~~l~M 131 (229)
T COG3010 101 IIAF--DATD---RPR--------P--------------------------------DG--DLEELIAR--IKYPGQLAM 131 (229)
T ss_pred EEEe--eccc---CCC--------C--------------------------------cc--hHHHHHHH--hhcCCcEEE
Confidence 7765 4321 110 1 11 222 3444 233556777
Q ss_pred EecCCHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 231 KGVLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 231 K~v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
--+++.|++..|.++|+|.|-..-+|.+. .....+.+..+.++.+. .++||+.|.+.+++++.+++.+||++|.+
T Consensus 132 AD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~---~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvV 208 (229)
T COG3010 132 ADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDA---GCRVIAEGRYNTPEQAKKAIEIGADAVVV 208 (229)
T ss_pred eccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHhC---CCeEEeeCCCCCHHHHHHHHHhCCeEEEE
Confidence 88999999999999999998655455443 22345677888888773 89999999999999999999999999999
Q ss_pred cHHHH
Q 017492 309 GRPVV 313 (370)
Q Consensus 309 gr~~l 313 (370)
|+++-
T Consensus 209 GsAIT 213 (229)
T COG3010 209 GSAIT 213 (229)
T ss_pred CcccC
Confidence 99763
No 104
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=98.68 E-value=3.6e-06 Score=78.94 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=102.3
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++.+.+.|+++|.+. .|.+ -|. .+.+..+. +....+.......
T Consensus 27 dP~~e~s~e~i~~L~~~GaD~iELG--vPfS------------DPv---------ADGP~Iq~----A~~rAL~~g~t~~ 79 (265)
T COG0159 27 DPDLETSLEIIKTLVEAGADILELG--VPFS------------DPV---------ADGPTIQA----AHLRALAAGVTLE 79 (265)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEec--CCCC------------CcC---------ccCHHHHH----HHHHHHHCCCCHH
Confidence 3467888899999999999999874 3432 121 00001111 1112222212223
Q ss_pred ccHHHHHHHHHh-cCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc--------C-
Q 017492 212 LSWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR--------Q- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~-~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~--------~- 259 (370)
..++.++++|+. .++|+++-+..++ +..+.+.++|+|++.+-. ||=. .
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~ 159 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTP 159 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 467889999966 6899998886554 337889999999999831 1100 0
Q ss_pred -------------------C--CCc-c-c----hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 260 -------------------L--DYV-P-A----TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 260 -------------------~--~~~-~-~----~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
. -+| . + ..+.+..+++.. ++||++--||++++++.+.... ||+|.+|+++
T Consensus 160 ~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAi 236 (265)
T COG0159 160 DERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAI 236 (265)
T ss_pred HHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHH
Confidence 0 011 1 1 223455555554 8999999999999999999999 9999999999
Q ss_pred HHHHHh
Q 017492 313 VYSLAA 318 (370)
Q Consensus 313 l~~~~~ 318 (370)
+..+..
T Consensus 237 V~~i~~ 242 (265)
T COG0159 237 VKIIEE 242 (265)
T ss_pred HHHHHh
Confidence 986654
No 105
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=98.67 E-value=6.2e-07 Score=80.82 Aligned_cols=169 Identities=19% Similarity=0.191 Sum_probs=103.9
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-++...+.+...+.++.+.+.|++.+.+++..+..-.-.+.++..+ |. .+...++.. ..........+....+
T Consensus 6 ~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~--~~~~iGag~v~~--~~~~~~a~~~Ga~~i~ 81 (190)
T cd00452 6 LVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEF--PEALIGAGTVLT--PEQADAAIAAGAQFIV 81 (190)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHC--CCCEEEEEeCCC--HHHHHHHHHcCCCEEE
Confidence 344555667788888888888889999999887664222223343333 21 111111100 0000000000111111
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
. +..+.+.++. ++..+.|+++ ++.|++++..+.++|+|+|.++.. .+...+.+..+.+.. ..+|++
T Consensus 82 ~----p~~~~~~~~~-~~~~~~~~i~-gv~t~~e~~~A~~~Gad~i~~~p~-------~~~g~~~~~~l~~~~-~~~p~~ 147 (190)
T cd00452 82 S----PGLDPEVVKA-ANRAGIPLLP-GVATPTEIMQALELGADIVKLFPA-------EAVGPAYIKALKGPF-PQVRFM 147 (190)
T ss_pred c----CCCCHHHHHH-HHHcCCcEEC-CcCCHHHHHHHHHCCCCEEEEcCC-------cccCHHHHHHHHhhC-CCCeEE
Confidence 1 1223333444 4456788765 678999999999999999998531 122345566665544 259999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.||| +.+++.+++..||++|.+++.+.
T Consensus 148 a~GGI-~~~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 148 PTGGV-SLDNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred EeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence 99999 99999999999999999999876
No 106
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=98.67 E-value=9.4e-07 Score=80.33 Aligned_cols=171 Identities=17% Similarity=0.185 Sum_probs=116.1
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-+....+.+...+.++.+.+.|++.+.||+++|..-.-.+.++..| |. .+...++... ...+.....+....+
T Consensus 10 liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~--~~~~vGAGTVl~~--~~a~~a~~aGA~Fiv 85 (204)
T TIGR01182 10 IVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEV--PDALIGAGTVLNP--EQLRQAVDAGAQFIV 85 (204)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEEEEeCCCH--HHHHHHHHcCCCEEE
Confidence 445556778888889999999999999999999987655556666555 32 1223332110 011111112222222
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.|.++.+.++..++ .++|++ -|++|+.++..|.++|+|.|.++-.+ .-+|+. .++.++.-+ .++|++
T Consensus 86 ----sP~~~~~v~~~~~~-~~i~~i-PG~~TptEi~~A~~~Ga~~vKlFPA~---~~GG~~---yikal~~pl-p~i~~~ 152 (204)
T TIGR01182 86 ----SPGLTPELAKHAQD-HGIPII-PGVATPSEIMLALELGITALKLFPAE---VSGGVK---MLKALAGPF-PQVRFC 152 (204)
T ss_pred ----CCCCCHHHHHHHHH-cCCcEE-CCCCCHHHHHHHHHCCCCEEEECCch---hcCCHH---HHHHHhccC-CCCcEE
Confidence 24456666776554 588876 58999999999999999999996421 001233 444444444 479999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+|||.- +++..++.+||.+|++|+.++.
T Consensus 153 ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~~ 181 (204)
T TIGR01182 153 PTGGINL-ANVRDYLAAPNVACGGGSWLVP 181 (204)
T ss_pred ecCCCCH-HHHHHHHhCCCEEEEEChhhcC
Confidence 9999976 8999999999999999998864
No 107
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=98.64 E-value=1.6e-06 Score=85.59 Aligned_cols=102 Identities=26% Similarity=0.316 Sum_probs=75.7
Q ss_pred CccHHHHHHHHHhcC--CcEEEEecC---------CHHH----HHHHHHcC-ccEEEEccCCcc---CCCCccch--HHH
Q 017492 211 SLSWKDVKWLQTITK--LPILVKGVL---------TAED----ARIAVQAG-AAGIIVSNHGAR---QLDYVPAT--IMA 269 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~--~Pv~vK~v~---------~~~~----a~~a~~aG-~d~I~vs~~gg~---~~~~~~~~--~~~ 269 (370)
.|..|.++.+|+.++ .||.+++.. +.++ ++.+.+.| +|.|.++..+.. ......+. ...
T Consensus 200 Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~ 279 (363)
T COG1902 200 RFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEF 279 (363)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHH
Confidence 467889999999994 589999862 2233 67788999 799999863321 11111111 123
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 270 l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
...++... ++|+|++|+|++++.+.++|+-| ||.|.+||+|+.
T Consensus 280 a~~i~~~~--~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 280 AARIKKAV--RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 44455555 69999999999999999999998 999999999985
No 108
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.62 E-value=9.7e-06 Score=75.96 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=64.9
Q ss_pred HHHHHHHhcCCcEEEEec--CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 216 DVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
.++.+++. ++..++-.- .+.+..+...+..-..+.++-.+|+.........+.+.++++.. .+.||+++|||++.+
T Consensus 121 ~~~~~~~~-Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~-~~~~i~v~gGI~~~e 198 (244)
T PRK13125 121 YVEIIKNK-GLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLV-GNKYLVVGFGLDSPE 198 (244)
T ss_pred HHHHHHHc-CCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc-CCCCEEEeCCcCCHH
Confidence 44555543 554444332 34677777777765555555334432222222334666666654 257899999999999
Q ss_pred HHHHHHHhCCCEEEEcHHHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~~~ 316 (370)
++.+++..|||++.+|+.++.-+
T Consensus 199 ~i~~~~~~gaD~vvvGSai~~~~ 221 (244)
T PRK13125 199 DARDALSAGADGVVVGTAFIEEL 221 (244)
T ss_pred HHHHHHHcCCCEEEECHHHHHHH
Confidence 99998999999999999988644
No 109
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.62 E-value=4.8e-07 Score=85.04 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC---------------------C----------C
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL---------------------D----------Y 262 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~---------------------~----------~ 262 (370)
.+.+..+++.++.|++ -++.+.++|.++.+.|+|.|-..+.||+.- . .
T Consensus 103 de~~~~~K~~f~vpfm-ad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~ 181 (287)
T TIGR00343 103 DWTFHIDKKKFKVPFV-CGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKE 181 (287)
T ss_pred HHHHHHHHHHcCCCEE-ccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcc
Confidence 4567778888888875 678999999999999999998877666531 0 0
Q ss_pred ccchHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 263 VPATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 263 ~~~~~~~l~~i~~~~~~~ipvi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
-.++++.|.++++.. ++||+ +.|||.|++|+.+++.+||++|.+|+.++.
T Consensus 182 ~~~~~elLkei~~~~--~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 182 LRVPVELLLEVLKLG--KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred cCCCHHHHHHHHHhC--CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 135677888888765 79998 999999999999999999999999999864
No 110
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.62 E-value=1.2e-06 Score=80.71 Aligned_cols=172 Identities=14% Similarity=0.141 Sum_probs=116.3
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcC--CCC-ccccccccccccCccccccchhhHH
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFT--LPP-FLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~--~p~-~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
.+=+....+.+...+.++.+.+.|++.+.||+++|..-...+.++..|. .|. .++..++... ...+.....++..
T Consensus 17 vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~--e~a~~a~~aGA~F 94 (222)
T PRK07114 17 MVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDA--ATAALYIQLGANF 94 (222)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCH--HHHHHHHHcCCCE
Confidence 4445567788999999999999999999999999986655666654432 232 1222222110 0011111122222
Q ss_pred HhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+ .|.++.+.++..++ .++|++ -|++|+.++..+.++|++.|.++-.+ ..|+ ..+..+..-+ ..++
T Consensus 95 iV----sP~~~~~v~~~~~~-~~i~~i-PG~~TpsEi~~A~~~Ga~~vKlFPA~----~~G~---~~ikal~~p~-p~i~ 160 (222)
T PRK07114 95 IV----TPLFNPDIAKVCNR-RKVPYS-PGCGSLSEIGYAEELGCEIVKLFPGS----VYGP---GFVKAIKGPM-PWTK 160 (222)
T ss_pred EE----CCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECccc----ccCH---HHHHHHhccC-CCCe
Confidence 23 24556667777665 588875 88999999999999999999996421 1223 3444444444 3799
Q ss_pred EEEecCCCC-HHHHHHHHHhCCCEEEEcHHHH
Q 017492 283 VFLDGGVRR-GTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 283 vi~~GGI~~-~~dv~kalalGAd~V~igr~~l 313 (370)
++.+|||.- .+++..++.+|+.+|++|+.++
T Consensus 161 ~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~ 192 (222)
T PRK07114 161 IMPTGGVEPTEENLKKWFGAGVTCVGMGSKLI 192 (222)
T ss_pred EEeCCCCCcchhcHHHHHhCCCEEEEEChhhc
Confidence 999999985 5899999999999999999875
No 111
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.62 E-value=6.8e-07 Score=88.77 Aligned_cols=103 Identities=10% Similarity=-0.004 Sum_probs=72.3
Q ss_pred CCCccHHHHHHHHHhcC--CcEEEEecC----------CHHHH----HHHHHcCccEEEEccCCc----cCCCC--ccch
Q 017492 209 DRSLSWKDVKWLQTITK--LPILVKGVL----------TAEDA----RIAVQAGAAGIIVSNHGA----RQLDY--VPAT 266 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~--~Pv~vK~v~----------~~~~a----~~a~~aG~d~I~vs~~gg----~~~~~--~~~~ 266 (370)
...|..+.++.||+.++ .||.+|+.. +.+++ +.+.+ .+|.+.++...- ..... ....
T Consensus 199 R~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g~~~~~~~~~~~~~~~~~ 277 (370)
T cd02929 199 RARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVGDWANDGEDSRFYPEGHQ 277 (370)
T ss_pred hhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCCCccccccccccCCcccc
Confidence 34568899999999984 677777641 24432 33443 489999874210 00000 1112
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 267 ~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
++...++++.+ ++||+++|||++++++.++|..| ||+|++||+++.
T Consensus 278 ~~~~~~ik~~~--~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 278 EPYIKFVKQVT--SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 45566777776 79999999999999999999987 999999999984
No 112
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.59 E-value=7.8e-07 Score=82.00 Aligned_cols=94 Identities=22% Similarity=0.201 Sum_probs=72.6
Q ss_pred cHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
..+.++.+++.+ .|+.+|.+ ++.++ .+.+.++|+|+|..|..- ..+..+.+.+..+++..+++++|
T Consensus 108 v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~----~~~gat~~~v~~m~~~~~~~~~I 182 (221)
T PRK00507 108 VEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGF----STGGATVEDVKLMRETVGPRVGV 182 (221)
T ss_pred HHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC----CCCCCCHHHHHHHHHHhCCCceE
Confidence 455677887765 47788985 44443 456889999998886532 12346777788787877778999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
.++|||++.+|+.+.+.+||+.++..+.
T Consensus 183 KasGGIrt~~~a~~~i~aGA~riGtS~~ 210 (221)
T PRK00507 183 KASGGIRTLEDALAMIEAGATRLGTSAG 210 (221)
T ss_pred EeeCCcCCHHHHHHHHHcCcceEccCcH
Confidence 9999999999999999999999887764
No 113
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.55 E-value=9.4e-07 Score=80.42 Aligned_cols=98 Identities=22% Similarity=0.267 Sum_probs=75.0
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccC
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 279 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 279 (370)
+.+...++|+.+++.++-++.+|.+ ++.++ .+.+.++|+|+|..|.... .+..+.+.+.-+++.+++
T Consensus 107 ~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~----~~gAT~edv~lM~~~vg~ 182 (228)
T COG0274 107 NWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFS----AGGATVEDVKLMKETVGG 182 (228)
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHhcc
Confidence 3344566899999998766778876 34333 4567899999999986322 445677777777777777
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
++.|-++||||+.+|+.+.+.+||.-++..+
T Consensus 183 ~vgvKaSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 183 RVGVKASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred CceeeccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 8999999999999999999999977665554
No 114
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.50 E-value=2.4e-06 Score=79.05 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
.+.++.+.+.|++.+.+..-..-+... .+.++.+.++.+.. ++||++.|||++.+|+.+++.+||++|++|++++.+
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~-g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLS-GPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcC-CCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 355788999999998874321111112 35688888888875 799999999999999999999999999999999863
No 115
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.49 E-value=2.7e-06 Score=77.24 Aligned_cols=94 Identities=22% Similarity=0.247 Sum_probs=69.4
Q ss_pred HHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCC-C-CccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQL-D-YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~-~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
++.+|+.. +..|.+ .+.+.++++.+.+.|+|+|.++.-..+.. . ..+..++.+.++.+.+ ++||++.||| +.+
T Consensus 86 ~~~~r~~~~~~~ig~-s~~s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~~ 161 (201)
T PRK07695 86 VRSVREKFPYLHVGY-SVHSLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TPE 161 (201)
T ss_pred HHHHHHhCCCCEEEE-eCCCHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CHH
Confidence 34555544 344554 46788999999999999997753222211 1 1233567778777765 7999999999 899
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~ 314 (370)
++.+++.+||++|.+|+.+..
T Consensus 162 ~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 162 NTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred HHHHHHHcCCCEEEEEHHHhc
Confidence 999999999999999999875
No 116
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.49 E-value=1.3e-06 Score=81.37 Aligned_cols=100 Identities=24% Similarity=0.418 Sum_probs=79.0
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEccC---------------Cc-c---CC------------
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSNH---------------GA-R---QL------------ 260 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~~---------------gg-~---~~------------ 260 (370)
.++.++++++.+++|+++- ++.+.++++.+.++|+|.|+++.. |. + .+
T Consensus 64 ~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~ 143 (241)
T PRK13585 64 NAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGW 143 (241)
T ss_pred cHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCC
Confidence 5778999999999999995 468899999999999999988631 10 0 00
Q ss_pred ------------------------------C--CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 261 ------------------------------D--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 261 ------------------------------~--~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
+ ...+.++.+.++.+.+ ++||++.|||++.+|+.+++.+||++|++
T Consensus 144 ~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 144 TEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 0 0122456677777766 79999999999999999998899999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
|++++.
T Consensus 222 gsa~~~ 227 (241)
T PRK13585 222 GSALYK 227 (241)
T ss_pred EHHHhc
Confidence 999875
No 117
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.48 E-value=1.4e-06 Score=82.17 Aligned_cols=98 Identities=24% Similarity=0.335 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccC------------------C-----C-------Cc
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ------------------L-----D-------YV 263 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~------------------~-----~-------~~ 263 (370)
.+.+..+++.++.|++ -++.+.++|.++.+.|+|.|-..+.-|+. + + .-
T Consensus 110 d~~~~~~K~~f~~~fm-ad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~ 188 (293)
T PRK04180 110 DEEYHIDKWDFTVPFV-CGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKEL 188 (293)
T ss_pred HHHHHHHHHHcCCCEE-ccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhcccc
Confidence 4567888888888875 67899999999999999999876433321 0 0 12
Q ss_pred cchHHHHHHHHHHccCCCcEE--EecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 264 PATIMALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 264 ~~~~~~l~~i~~~~~~~ipvi--~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.|.++++.. ++||+ +.|||.+++|+.+++.+||++|++|+.++.
T Consensus 189 ~~~~elL~ei~~~~--~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 189 QAPYELVKEVAELG--RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred CCCHHHHHHHHHhC--CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 35678888888865 79998 999999999999999999999999999864
No 118
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=98.48 E-value=8.8e-06 Score=76.65 Aligned_cols=159 Identities=20% Similarity=0.290 Sum_probs=98.0
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..+.+.+.+.++...+.|++.+.|.+ |.. -|- .+.+..++ +....+....+..
T Consensus 20 ~P~~~~~~~~~~~l~~~GaD~iEiGi--PfS------------DP~---------ADGpvIq~----A~~rAL~~G~~~~ 72 (259)
T PF00290_consen 20 YPDLETTLEILKALEEAGADIIEIGI--PFS------------DPV---------ADGPVIQK----ASQRALKNGFTLE 72 (259)
T ss_dssp SSSHHHHHHHHHHHHHTTBSSEEEE----SS------------SCT---------TSSHHHHH----HHHHHHHTT--HH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECC--CCC------------CCC---------CCCHHHHH----HHHHHHHCCCCHH
Confidence 45678999999999999999988753 321 121 00000111 1111222212223
Q ss_pred ccHHHHHHHH-HhcCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc----------
Q 017492 212 LSWKDVKWLQ-TITKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR---------- 258 (370)
Q Consensus 212 ~~~~~i~~ir-~~~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~---------- 258 (370)
..++.++++| +..++|+++-+..++ +.++.+.++|+|++++-. ||=.
T Consensus 73 ~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 73 KIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp HHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred HHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3567899999 667999998876432 347888999999999832 1100
Q ss_pred ---------------------CCCCcc----c-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 259 ---------------------QLDYVP----A-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 259 ---------------------~~~~~~----~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
...+.. . ..+.+..+++.. ++||++.-||++++|+.+.. .|||+|.+||++
T Consensus 153 ~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~ 229 (259)
T PF00290_consen 153 EERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAF 229 (259)
T ss_dssp HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHH
T ss_pred HHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEECHHH
Confidence 000111 1 123456666554 89999999999999997766 999999999999
Q ss_pred HHHHHhcC
Q 017492 313 VYSLAAEG 320 (370)
Q Consensus 313 l~~~~~~G 320 (370)
+.-+...+
T Consensus 230 v~~i~~~~ 237 (259)
T PF00290_consen 230 VKIIEENG 237 (259)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcc
Confidence 98765433
No 119
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.47 E-value=1.8e-06 Score=80.75 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-GAd~V~igr~~l~ 314 (370)
.+.++.+.+.|+|.|.+++...... .....++.+.++.+.. ++||+++|||++.+|+.+++.. |||+|++||+++.
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~-~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGT-KKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCC-CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 4567889999999999965211001 1223677788887766 8999999999999999999997 9999999999986
Q ss_pred H
Q 017492 315 S 315 (370)
Q Consensus 315 ~ 315 (370)
+
T Consensus 229 ~ 229 (243)
T cd04731 229 G 229 (243)
T ss_pred C
Confidence 3
No 120
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.46 E-value=9.2e-06 Score=73.67 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=112.9
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-+....+.+...+.++.+.+.|++.+.||+++|..-.-.+.++..+ |. .+...++... ...+.....+....+
T Consensus 6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~--~~~~vGAGTVl~~--e~a~~ai~aGA~Fiv 81 (201)
T PRK06015 6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV--EEAIVGAGTILNA--KQFEDAAKAGSRFIV 81 (201)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC--CCCEEeeEeCcCH--HHHHHHHHcCCCEEE
Confidence 344555678888889999999999999999999987544445555555 32 1222222110 011111112222222
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.|.++.+.+++.++ .++|++ -|++|+.++..+.++|++.|.++-.+ .-+|+ ..+..++.-+ .++|++
T Consensus 82 ----SP~~~~~vi~~a~~-~~i~~i-PG~~TptEi~~A~~~Ga~~vK~FPa~---~~GG~---~yikal~~pl-p~~~l~ 148 (201)
T PRK06015 82 ----SPGTTQELLAAAND-SDVPLL-PGAATPSEVMALREEGYTVLKFFPAE---QAGGA---AFLKALSSPL-AGTFFC 148 (201)
T ss_pred ----CCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEECCch---hhCCH---HHHHHHHhhC-CCCcEE
Confidence 34566777777654 588875 88999999999999999999996321 00123 3445554545 379999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+|||.. +++..++.+|+.+++.|+.+.
T Consensus 149 ptGGV~~-~n~~~~l~ag~~~~~ggs~l~ 176 (201)
T PRK06015 149 PTGGISL-KNARDYLSLPNVVCVGGSWVA 176 (201)
T ss_pred ecCCCCH-HHHHHHHhCCCeEEEEchhhC
Confidence 9999976 899999999988777777664
No 121
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.45 E-value=8e-07 Score=83.13 Aligned_cols=77 Identities=25% Similarity=0.284 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh---CCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL---GASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal---GAd~V~igr~~ 312 (370)
.+.++.+.+.|++.|++.+...-+...|+ .++.+.++.+.. ++||+++|||++.+|+.+++.+ ||++|++||++
T Consensus 149 ~~~~~~l~~~G~~~iiv~~~~~~g~~~G~-d~~~i~~i~~~~--~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 149 WEVLERLDSAGCSRYVVTDVTKDGTLTGP-NLELLREVCART--DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHHHHHHhcCCCEEEEEeecCCCCccCC-CHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 35578899999999999543222223444 889999998876 8999999999999999988654 99999999999
Q ss_pred HHH
Q 017492 313 VYS 315 (370)
Q Consensus 313 l~~ 315 (370)
+.+
T Consensus 226 ~~g 228 (241)
T PRK14024 226 YAG 228 (241)
T ss_pred HcC
Confidence 864
No 122
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.44 E-value=1.7e-06 Score=79.82 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHcCccEEEEcc--CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
..++..++++.++|++.|-.-+ -| +. .|....+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++|+
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIG-sg--~Gi~~~~~I~~I~e~~--~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIG-SG--QGLLNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhC--CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 5689999999999999995411 12 11 3455677888887764 7999999999999999999999999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
++..
T Consensus 206 AIt~ 209 (248)
T cd04728 206 AIAK 209 (248)
T ss_pred HhcC
Confidence 8864
No 123
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.44 E-value=3.7e-06 Score=76.52 Aligned_cols=118 Identities=25% Similarity=0.362 Sum_probs=88.8
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc------------------------------------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN------------------------------------ 254 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~------------------------------------ 254 (370)
...+.++++.+.+.+|+.|.| +.+.+|+++++.+|||-|.+-.
T Consensus 61 ~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~ 140 (256)
T COG0107 61 TMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENG 140 (256)
T ss_pred hHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCC
Confidence 356778888888999999976 6899999999999999998820
Q ss_pred ------CCccC---C------------------------CCcc--chHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH
Q 017492 255 ------HGARQ---L------------------------DYVP--ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL 299 (370)
Q Consensus 255 ------~gg~~---~------------------------~~~~--~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal 299 (370)
|||+. + |+.. -.++.+..+++.+ ++|||+|||..+.+|..+++
T Consensus 141 ~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~GyDl~l~~~v~~~v--~iPvIASGGaG~~ehf~eaf 218 (256)
T COG0107 141 WYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGTKAGYDLELTRAVREAV--NIPVIASGGAGKPEHFVEAF 218 (256)
T ss_pred cEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccccccCcCHHHHHHHHHhC--CCCEEecCCCCcHHHHHHHH
Confidence 23321 1 1111 1445677777777 89999999999999999999
Q ss_pred HhC-CCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC
Q 017492 300 ALG-ASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGC 344 (370)
Q Consensus 300 alG-Ad~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~ 344 (370)
..| ||++..++-|.|+ . .-..|++..|...|.
T Consensus 219 ~~~~adAaLAAsiFH~~-----~--------~~i~evK~yL~~~gi 251 (256)
T COG0107 219 TEGKADAALAASIFHFG-----E--------ITIGEVKEYLAEQGI 251 (256)
T ss_pred HhcCccHHHhhhhhhcC-----c--------ccHHHHHHHHHHcCC
Confidence 988 9999999888774 2 224566666666664
No 124
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.43 E-value=1.9e-06 Score=79.76 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.+.++.+.+.|++.|.+.....-+...| +.++.+.++.+.+ .+||++.|||++.+|+.+++..| |++|++||+++.
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~--~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAV--PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 3557888899999887753211111233 5788999998876 69999999999999999999998 999999999986
Q ss_pred H
Q 017492 315 S 315 (370)
Q Consensus 315 ~ 315 (370)
+
T Consensus 226 ~ 226 (233)
T PRK00748 226 G 226 (233)
T ss_pred C
Confidence 4
No 125
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.43 E-value=5.1e-06 Score=74.73 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=99.2
Q ss_pred EEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCc-cccccccccccCccccccchhhHHHh
Q 017492 126 FFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPF-LTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 126 ~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
.+-+....+.+...+.++.+.+.|++.+-++...+..-......+..+ |.. .....+.- ....+.....+....+
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~--~~~~~g~gtvl~--~d~~~~A~~~gAdgv~ 89 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKL--PECIIGTGTILT--LEDLEEAIAAGAQFCF 89 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhC--CCcEEeEEEEEc--HHHHHHHHHcCCCEEE
Confidence 444555666777777777777777777777766554322222222211 110 00000000 0000000000000011
Q ss_pred hhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 205 AGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
. |.+..+ +...++..+.+.++. +.+++++..+.+.|+|+|.++-. ......+.+..++..+ .++|++
T Consensus 90 ~----p~~~~~-~~~~~~~~~~~~i~G-~~t~~e~~~A~~~Gadyv~~Fpt------~~~~G~~~l~~~~~~~-~~ipvv 156 (187)
T PRK07455 90 T----PHVDPE-LIEAAVAQDIPIIPG-ALTPTEIVTAWQAGASCVKVFPV------QAVGGADYIKSLQGPL-GHIPLI 156 (187)
T ss_pred C----CCCCHH-HHHHHHHcCCCEEcC-cCCHHHHHHHHHCCCCEEEECcC------CcccCHHHHHHHHhhC-CCCcEE
Confidence 1 122333 344455567777655 89999999999999999998321 1122356677777665 369999
Q ss_pred EecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.||| +.+++...++.||++|.+++.++
T Consensus 157 aiGGI-~~~n~~~~l~aGa~~vav~s~i~ 184 (187)
T PRK07455 157 PTGGV-TLENAQAFIQAGAIAVGLSGQLF 184 (187)
T ss_pred EeCCC-CHHHHHHHHHCCCeEEEEehhcc
Confidence 99999 66999999999999999999865
No 126
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.42 E-value=2e-06 Score=79.45 Aligned_cols=77 Identities=19% Similarity=0.319 Sum_probs=62.2
Q ss_pred cCCHHHHHHHHHcCccEEEEcc--CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
..++..++++.++|++.|-.-+ -| +. .|....+.+..+++.. ++|||++|||.+++|+.+++.+|||+|++|+
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIG-sg--~gi~~~~~i~~i~e~~--~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIG-SG--LGLLNPYNLRIIIEQA--DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-CC--CCCCCHHHHHHHHHhc--CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 4689999999999999995411 12 11 2455567788777764 7999999999999999999999999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
++..
T Consensus 206 AItk 209 (250)
T PRK00208 206 AIAV 209 (250)
T ss_pred HhhC
Confidence 8864
No 127
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.41 E-value=1.8e-06 Score=81.52 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=62.0
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH-HhCCCEEEEcHHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL-ALGASGIFIGRPVVYS 315 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal-alGAd~V~igr~~l~~ 315 (370)
+.++.+.+.|++.|.+.+-..-+...| +.++.+.++.+.. ++|||++|||++.+|+.+++ ..|+++|.+|++|.|.
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G-~d~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKG-YDLELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCC-CCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 557888899999999854221112233 4888899998876 89999999999999999999 7999999999999883
No 128
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.40 E-value=3e-06 Score=78.90 Aligned_cols=101 Identities=27% Similarity=0.329 Sum_probs=79.4
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc---------------CCcc---CC------------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN---------------HGAR---QL------------ 260 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~---------------~gg~---~~------------ 260 (370)
...+.|+++.+.+++||.+.+ +.+.++++.+.++|++.++++. +|.+ .+
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw 142 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGW 142 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCC
Confidence 367789999998899999975 6899999999999999999853 1111 00
Q ss_pred ------------------------------CC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 261 ------------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 261 ------------------------------~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
++ ..+.++.+.++.+.. ++||+++|||++.+|+.+++.+|+++|.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 143 EEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKAT--TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 00 112455666666654 79999999999999999999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
|++++.
T Consensus 221 G~a~~~ 226 (234)
T PRK13587 221 GKAAHQ 226 (234)
T ss_pred hHHHHh
Confidence 999875
No 129
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=98.40 E-value=5.4e-06 Score=75.90 Aligned_cols=94 Identities=26% Similarity=0.292 Sum_probs=68.2
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
...++++++++.++ .+.+|.+ ++.++ .+.+.++|+|+|..|..-+ .+..+...+..+++.++++++
T Consensus 103 ~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~----~~gat~~dv~~m~~~v~~~v~ 177 (211)
T TIGR00126 103 VVYDDIRAVVEACA-GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG----AGGATVEDVRLMRNTVGDTIG 177 (211)
T ss_pred HHHHHHHHHHHHcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHHhccCCe
Confidence 35667888888774 3334544 34333 5678899999999985311 233566666666666666899
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
|-++|||++.+|+++.+.+||+-++..+
T Consensus 178 IKaaGGirt~~~a~~~i~aGa~riGts~ 205 (211)
T TIGR00126 178 VKASGGVRTAEDAIAMIEAGASRIGASA 205 (211)
T ss_pred EEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence 9999999999999999999999876643
No 130
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=98.39 E-value=3.9e-06 Score=82.50 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=75.1
Q ss_pred CccHHHHHHHHHhc--CCcEEEEecCC--------HHH----HHHHHHcCccEEEEccCCccC-------CCC-cc--ch
Q 017492 211 SLSWKDVKWLQTIT--KLPILVKGVLT--------AED----ARIAVQAGAAGIIVSNHGARQ-------LDY-VP--AT 266 (370)
Q Consensus 211 ~~~~~~i~~ir~~~--~~Pv~vK~v~~--------~~~----a~~a~~aG~d~I~vs~~gg~~-------~~~-~~--~~ 266 (370)
.|..+.|+.||+.+ +.||.+|.... .++ ++.+.++|+|.+.++...... ... .. ..
T Consensus 200 Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (341)
T PF00724_consen 200 RFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYN 279 (341)
T ss_dssp HHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTT
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchh
Confidence 35788999999998 58899998621 122 577888999998776422110 011 11 12
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 267 ~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
......+++.+ ++|||++|||++++.+.++++.| ||+|.+||+++.
T Consensus 280 ~~~a~~ik~~~--~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 280 LDLAEAIKKAV--KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHHHHHHHHHH--SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhhhhhhhhhc--CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 34556666766 89999999999999999999988 999999999985
No 131
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.38 E-value=1.4e-06 Score=93.55 Aligned_cols=142 Identities=27% Similarity=0.260 Sum_probs=105.1
Q ss_pred ccHHHHHHHHHhc-----CCcEEEEecCCHH---HHHHHHHcCccEEEEccC-CccC---C---CCccchHHH-HHHHHH
Q 017492 212 LSWKDVKWLQTIT-----KLPILVKGVLTAE---DARIAVQAGAAGIIVSNH-GARQ---L---DYVPATIMA-LEEVVK 275 (370)
Q Consensus 212 ~~~~~i~~ir~~~-----~~Pv~vK~v~~~~---~a~~a~~aG~d~I~vs~~-gg~~---~---~~~~~~~~~-l~~i~~ 275 (370)
+++|+++++.-.. .-.|.||++...- -|.-..++.||.|.||+| ||+. + ....-+|+. |.+-.+
T Consensus 1080 YSIEDLaQLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQ 1159 (2142)
T KOG0399|consen 1080 YSIEDLAQLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQ 1159 (2142)
T ss_pred ccHHHHHHHHHHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhh
Confidence 4778777665433 3568999875321 245567788999999999 5542 1 122223432 444444
Q ss_pred H-----ccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhc--------------------------C-HHH
Q 017492 276 A-----TQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAE--------------------------G-EKG 323 (370)
Q Consensus 276 ~-----~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~--------------------------G-~~~ 323 (370)
. ++.++-+-.||++++|.||+-|-.+||+-.++++.-|.++.|. | ++.
T Consensus 1160 tLv~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~Peh 1239 (2142)
T KOG0399|consen 1160 TLVLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEH 1239 (2142)
T ss_pred HHhhccccccEEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHH
Confidence 3 3458889999999999999999999999999999877776651 2 456
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCChhhhccc
Q 017492 324 VRRVLEMLREEFELAMALSGCRSLKEITRD 353 (370)
Q Consensus 324 v~~~l~~l~~el~~~m~~~G~~~l~~l~~~ 353 (370)
|.+++-.+.+|+|.+|..+|+++++|+-+.
T Consensus 1240 vVNff~yvaEEvR~imakLGfrtldemvGr 1269 (2142)
T KOG0399|consen 1240 VVNFFFYVAEEVRGIMAKLGFRTLDEMVGR 1269 (2142)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchHHHHhcc
Confidence 888999999999999999999999998754
No 132
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.35 E-value=5.4e-06 Score=76.88 Aligned_cols=75 Identities=28% Similarity=0.251 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHH-HHHhCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK-ALALGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k-alalGAd~V~igr~~l 313 (370)
.+.++.+.++|+|.|.+++....+...+ +.++.+.++++.+ ++||+++|||++.+|+.+ ....||++|++|++|-
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~h 231 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAASLFH 231 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhhh
Confidence 4667889999999999976322111122 4678888888876 799999999999999999 5558999999999984
No 133
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=4.1e-06 Score=75.81 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=110.9
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCC
Q 017492 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDR 210 (370)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 210 (370)
...+.+....+++...+.|+++|.||+.+|....-.+.+++.+. ---+...++.. ..........|.+..+ .|
T Consensus 20 r~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~--~~q~~~a~~aGa~fiV----sP 92 (211)
T COG0800 20 RGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLN--PEQARQAIAAGAQFIV----SP 92 (211)
T ss_pred EeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccC--HHHHHHHHHcCCCEEE----CC
Confidence 35678888899999999999999999999998877777777663 11122222211 0001111122222233 24
Q ss_pred CccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.++.+.++... ..++|++ -|+.|+-++..+.++|++.+.++-... .+|+ ..+..+.--. .+++++..|||.
T Consensus 93 ~~~~ev~~~a~-~~~ip~~-PG~~TptEi~~Ale~G~~~lK~FPa~~---~Gg~---~~~ka~~gP~-~~v~~~pTGGVs 163 (211)
T COG0800 93 GLNPEVAKAAN-RYGIPYI-PGVATPTEIMAALELGASALKFFPAEV---VGGP---AMLKALAGPF-PQVRFCPTGGVS 163 (211)
T ss_pred CCCHHHHHHHH-hCCCccc-CCCCCHHHHHHHHHcChhheeecCccc---cCcH---HHHHHHcCCC-CCCeEeecCCCC
Confidence 45556555544 4588885 889999999999999999999964211 0122 2222222111 379999999997
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
. .++..++++|+.+|++|+-+..
T Consensus 164 ~-~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 164 L-DNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred H-HHHHHHHhCCceEEecCccccC
Confidence 6 6999999999999999987763
No 134
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=98.33 E-value=3.3e-06 Score=76.31 Aligned_cols=170 Identities=18% Similarity=0.235 Sum_probs=106.3
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHHhh
Q 017492 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (370)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (370)
+-+....+.+...+.++.+.+.|++.+.||+++|..-.-.+.++..+ |. .+...++... .........++...+
T Consensus 11 iaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~--p~~~vGAGTV~~~--e~a~~a~~aGA~Fiv- 85 (196)
T PF01081_consen 11 IAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF--PDLLVGAGTVLTA--EQAEAAIAAGAQFIV- 85 (196)
T ss_dssp EEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH--TTSEEEEES--SH--HHHHHHHHHT-SEEE-
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC--CCCeeEEEeccCH--HHHHHHHHcCCCEEE-
Confidence 33445677888888898899999999999999986544445555555 32 1222222110 000111112222222
Q ss_pred hcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 206 ~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.|.++.+.+++.++ .++|++ -|++|+.++..|.++|++.+.++-.+- -+|+ ..++.++.-+ .+++++.
T Consensus 86 ---SP~~~~~v~~~~~~-~~i~~i-PG~~TptEi~~A~~~G~~~vK~FPA~~---~GG~---~~ik~l~~p~-p~~~~~p 153 (196)
T PF01081_consen 86 ---SPGFDPEVIEYARE-YGIPYI-PGVMTPTEIMQALEAGADIVKLFPAGA---LGGP---SYIKALRGPF-PDLPFMP 153 (196)
T ss_dssp ---ESS--HHHHHHHHH-HTSEEE-EEESSHHHHHHHHHTT-SEEEETTTTT---TTHH---HHHHHHHTTT-TT-EEEE
T ss_pred ---CCCCCHHHHHHHHH-cCCccc-CCcCCHHHHHHHHHCCCCEEEEecchh---cCcH---HHHHHHhccC-CCCeEEE
Confidence 24566677777665 488875 789999999999999999999964211 0123 3455554444 3799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+|||.- +++..++.+|+.+|++|+.+..
T Consensus 154 tGGV~~-~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 154 TGGVNP-DNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp BSS--T-TTHHHHHTSTTBSEEEESGGGS
T ss_pred cCCCCH-HHHHHHHhCCCEEEEECchhcC
Confidence 999986 8999999999999999998764
No 135
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=98.33 E-value=1.3e-05 Score=72.92 Aligned_cols=91 Identities=29% Similarity=0.354 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHhcC-CcEEEEec-----CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCC
Q 017492 212 LSWKDVKWLQTITK-LPILVKGV-----LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-~Pv~vK~v-----~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 281 (370)
..++.+.++++.++ .|+ |.+ ++.+. ++.+.++|+|.|..+. |.. ...++...+..+.+.++.++
T Consensus 102 ~~~~ei~~v~~~~~g~~l--kvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsT-G~~---~~~at~~~v~~~~~~~~~~v 175 (203)
T cd00959 102 AVYEEIAAVVEACGGAPL--KVILETGLLTDEEIIKACEIAIEAGADFIKTST-GFG---PGGATVEDVKLMKEAVGGRV 175 (203)
T ss_pred HHHHHHHHHHHhcCCCeE--EEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCC-CCC---CCCCCHHHHHHHHHHhCCCc
Confidence 35667888888774 454 433 44333 5778999999999973 211 22345555555555554589
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
||.++|||++.+++++.+.+||+-++.
T Consensus 176 ~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 176 GVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred eEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 999999999999999999999987653
No 136
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.31 E-value=3.6e-05 Score=69.90 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=48.8
Q ss_pred HHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 237 EDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
.+.......++|+|.+... |++.....+..++.+.++++..+ ..+||+++|||+ .+++.+++..|||.+.+||+
T Consensus 117 ~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsa 195 (210)
T TIGR01163 117 LEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSA 195 (210)
T ss_pred HHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChH
Confidence 3333344456787765332 22211222334455555555442 237999999996 69999999999999999999
Q ss_pred HH
Q 017492 312 VV 313 (370)
Q Consensus 312 ~l 313 (370)
++
T Consensus 196 i~ 197 (210)
T TIGR01163 196 IF 197 (210)
T ss_pred Hh
Confidence 86
No 137
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=98.28 E-value=1.2e-05 Score=75.43 Aligned_cols=80 Identities=23% Similarity=0.324 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
+-+.++++.+.++|++.|-|-|.. +.+-...+....++...++.++.+++.+||.+.+|+.+....|+|+|.||+.+
T Consensus 165 Vh~~~El~~al~~~a~iiGINnRd---L~tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~l 241 (254)
T PF00218_consen 165 VHNEEELERALEAGADIIGINNRD---LKTFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVGEAL 241 (254)
T ss_dssp ESSHHHHHHHHHTT-SEEEEESBC---TTTCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHH
T ss_pred ECCHHHHHHHHHcCCCEEEEeCcc---ccCcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHH
Confidence 345555555555555555554432 22222233444455555556788999999999999999888999999999999
Q ss_pred HHH
Q 017492 313 VYS 315 (370)
Q Consensus 313 l~~ 315 (370)
|.+
T Consensus 242 m~~ 244 (254)
T PF00218_consen 242 MRS 244 (254)
T ss_dssp HTS
T ss_pred hCC
Confidence 863
No 138
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.27 E-value=4.1e-06 Score=77.78 Aligned_cols=100 Identities=27% Similarity=0.417 Sum_probs=76.5
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc----------------------------CC-------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN----------------------------HG------- 256 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~----------------------------~g------- 256 (370)
.++.|+++.+.+.+|+.+.+ +.+.++++.+.++|++.++++. +|
T Consensus 61 n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~g 140 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNG 140 (229)
T ss_dssp HHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETT
T ss_pred HHHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecC
Confidence 56789999999999999976 6899999999999999999952 11
Q ss_pred ccC---------------------------CCC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEE
Q 017492 257 ARQ---------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 257 g~~---------------------------~~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ 307 (370)
+.. .++ ..+.++.+.++++.. ++|++++|||++.+|+.++...|+++|.
T Consensus 141 w~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~--~~~viasGGv~~~~Dl~~l~~~G~~gvi 218 (229)
T PF00977_consen 141 WQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAV--NIPVIASGGVRSLEDLRELKKAGIDGVI 218 (229)
T ss_dssp TTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHH--SSEEEEESS--SHHHHHHHHHTTECEEE
T ss_pred ccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHc--CCCEEEecCCCCHHHHHHHHHCCCcEEE
Confidence 000 011 124567777887776 8999999999999999999999999999
Q ss_pred EcHHHHH
Q 017492 308 IGRPVVY 314 (370)
Q Consensus 308 igr~~l~ 314 (370)
+|++|+.
T Consensus 219 vg~al~~ 225 (229)
T PF00977_consen 219 VGSALHE 225 (229)
T ss_dssp ESHHHHT
T ss_pred EehHhhC
Confidence 9999965
No 139
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.24 E-value=9.6e-05 Score=65.95 Aligned_cols=172 Identities=22% Similarity=0.114 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHcCCceeecCCCCCCHHHHhccCC---CceEEEEeecC---ChHHHHHHHHHHHHcCCcEEEEecCCCCC
Q 017492 89 GEYATARAASAAGTIMTLSSWSTSSVEEVASTGP---GIRFFQLYVYK---DRNVVAQLVRRAERAGFKAIALTVDTPRL 162 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~---~~~~~Qly~~~---d~~~~~~~l~ra~~~G~~ai~itvd~p~~ 162 (370)
.-..+++.+.+.|+...+-.. ..++.+.+..+ -+.+.++-.+. ..+...+.++++++.|++++.+.. |..
T Consensus 14 ~~~~~~~~~~~~gv~gi~~~g--~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~~ 89 (201)
T cd00945 14 DIAKLCDEAIEYGFAAVCVNP--GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NIG 89 (201)
T ss_pred HHHHHHHHHHHhCCcEEEECH--HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cHH
Confidence 345788888888887655333 22344433322 23455554322 146677888999999999998752 210
Q ss_pred cchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhc--CCcEEEEecC----CH
Q 017492 163 GRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTIT--KLPILVKGVL----TA 236 (370)
Q Consensus 163 g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK~v~----~~ 236 (370)
+. | ..+.+...+.++.+++.+ ++|++++... ++
T Consensus 90 ----------~~-~------------------------------~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~ 128 (201)
T cd00945 90 ----------SL-K------------------------------EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTA 128 (201)
T ss_pred ----------HH-h------------------------------CCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCH
Confidence 00 0 001122456677787774 8999999862 44
Q ss_pred HHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.. +.+.+.|+++|..+.... .+...+..+.++.+..+.++||++.||+.+.+++..++.+||+++.+|
T Consensus 129 ~~~~~~~~~~~~~g~~~iK~~~~~~----~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 129 DEIAKAARIAAEAGADFIKTSTGFG----GGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCCCC----CCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 443 345689999999864211 122355667777766544689999999999999999999999999875
No 140
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.24 E-value=1.5e-05 Score=74.26 Aligned_cols=101 Identities=29% Similarity=0.377 Sum_probs=77.1
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc--------------CCc-c---CCC---C--------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--------------HGA-R---QLD---Y-------- 262 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~--------------~gg-~---~~~---~-------- 262 (370)
..+.++.+.+.+.+|+.+.+ +.+.++++.+.++|++.++++. .|. + .+| +
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~ 145 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPSDDDEDRLAALGEQRLVLSLDFRGGQLLKPTDF 145 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccchHHHHHHHhcCCCCeEEEEeccCCeeccccCc
Confidence 57788999988889999876 5789999999999999998853 121 1 011 0
Q ss_pred ----------------------------ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 263 ----------------------------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 263 ----------------------------~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
..+..+.+.++.+.. .+||++.|||++.+|+.+++.+||++|.+|++++.
T Consensus 146 ~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~~~~i~~~~--~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 146 IGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAARA--DIPVIAAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred CCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 012234445555443 79999999999999999999999999999999876
Q ss_pred H
Q 017492 315 S 315 (370)
Q Consensus 315 ~ 315 (370)
+
T Consensus 224 g 224 (233)
T cd04723 224 G 224 (233)
T ss_pred C
Confidence 4
No 141
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.22 E-value=1.4e-05 Score=73.67 Aligned_cols=101 Identities=28% Similarity=0.448 Sum_probs=82.0
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc---------------CCccC-----------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN---------------HGARQ----------------- 259 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~---------------~gg~~----------------- 259 (370)
..+.++++.+.+++||-+.| +.+.++++.+.++|++.++++. +|++-
T Consensus 63 n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~ 142 (241)
T COG0106 63 NLEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQ 142 (241)
T ss_pred cHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcccccccc
Confidence 56789999999999999876 6889999999999999999863 22210
Q ss_pred ----------------------------CCC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-CCCEEEE
Q 017492 260 ----------------------------LDY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFI 308 (370)
Q Consensus 260 ----------------------------~~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-GAd~V~i 308 (370)
.|+ .-+.++.+.++.+++ ++||+++|||++-+|+..+..+ |..+|.+
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~--~ipviaSGGv~s~~Di~~l~~~~G~~GvIv 220 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV--DIPVIASGGVSSLDDIKALKELSGVEGVIV 220 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh--CcCEEEecCcCCHHHHHHHHhcCCCcEEEE
Confidence 011 234667888888887 8999999999999999888888 9999999
Q ss_pred cHHHHHH
Q 017492 309 GRPVVYS 315 (370)
Q Consensus 309 gr~~l~~ 315 (370)
||+++.+
T Consensus 221 G~ALy~g 227 (241)
T COG0106 221 GRALYEG 227 (241)
T ss_pred ehHHhcC
Confidence 9999853
No 142
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.21 E-value=1e-05 Score=76.14 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-CCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-GASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-GAd~V~igr~~l~ 314 (370)
.+.++.+.+.|++.|.+.++.......+ ..++.+.++.+.. ++||+++|||++.+|+.+++.. ||++|++|+++.+
T Consensus 156 ~~~~~~~~~~g~~~ii~~~i~~~g~~~g-~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELGAGEILLTSMDRDGTKNG-YDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCCC-cCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 3557889999999999866432111122 3678888888876 7999999999999999999974 9999999999986
Q ss_pred H
Q 017492 315 S 315 (370)
Q Consensus 315 ~ 315 (370)
+
T Consensus 233 ~ 233 (253)
T PRK02083 233 G 233 (253)
T ss_pred C
Confidence 3
No 143
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=98.21 E-value=6.7e-05 Score=70.11 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=37.8
Q ss_pred HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 268 MALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 268 ~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
....++...++.+..+++.|||.+++|+.+.... ||+|.+|+.+|.+
T Consensus 190 ~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 190 NLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred HHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 4445555666667788999999999999887665 9999999999863
No 144
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.20 E-value=5.3e-05 Score=69.45 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=109.5
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCC-ccccccccccccCccccccchhhHHH
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPP-FLTLKNFQGLDLGKMDEANDSGLAAY 203 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (370)
..+-+....+.+...+.++.+.+.|++.+.||++.|..-.-.+.++..| |. .+...++.. ....+.....|+...
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~--p~~~IGAGTVl~--~~~a~~a~~aGA~Fi 91 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEV--PEALIGAGTVLN--PEQLAQAIEAGAQFI 91 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHC--CCCEEEEeeccC--HHHHHHHHHcCCCEE
Confidence 3455666788899899999999999999999999986444446666655 32 122222110 000011111122222
Q ss_pred hhhcCCCCccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 204 ~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+ .|.++.+.++..++ .++|++ -+++|+.++..+.++|++.|.++-.+ .. + ....+..++..+ ..+++
T Consensus 92 v----sP~~~~~vi~~a~~-~~i~~i-PG~~TptEi~~a~~~Ga~~vKlFPa~--~~-g---g~~~lk~l~~p~-p~~~~ 158 (212)
T PRK05718 92 V----SPGLTPPLLKAAQE-GPIPLI-PGVSTPSELMLGMELGLRTFKFFPAE--AS-G---GVKMLKALAGPF-PDVRF 158 (212)
T ss_pred E----CCCCCHHHHHHHHH-cCCCEe-CCCCCHHHHHHHHHCCCCEEEEccch--hc-c---CHHHHHHHhccC-CCCeE
Confidence 2 24456666776654 678874 77899999999999999999995311 00 1 233455554544 36999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.+|||.- +++.+++.+|+..++.|+.++
T Consensus 159 ~ptGGV~~-~ni~~~l~ag~v~~vggs~L~ 187 (212)
T PRK05718 159 CPTGGISP-ANYRDYLALPNVLCIGGSWMV 187 (212)
T ss_pred EEeCCCCH-HHHHHHHhCCCEEEEEChHhC
Confidence 99999966 899999999965555555443
No 145
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.20 E-value=1.2e-05 Score=73.56 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=64.5
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-ccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.+..+.+.+. +.-|+-=...++..++++.++||..|---+.. |+ ..|..+.+.|..+.+.. ++|||+|+||.+
T Consensus 112 tl~Aae~Lv~e-GF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGS--g~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~ 186 (247)
T PF05690_consen 112 TLKAAEILVKE-GFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGS--GRGIQNPYNLRIIIERA--DVPVIVDAGIGT 186 (247)
T ss_dssp HHHHHHHHHHT-T-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT-----SSTHHHHHHHHHHG--SSSBEEES---S
T ss_pred HHHHHHHHHHC-CCEEeecCCCCHHHHHHHHHCCCCEEEeccccccc--CcCCCCHHHHHHHHHhc--CCcEEEeCCCCC
Confidence 34444555443 44444344567888999999999999764321 11 13455678888888877 899999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l 313 (370)
+.|+.+++++|||+|.+-+++.
T Consensus 187 pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 187 PSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp HHHHHHHHHTT-SEEEESHHHH
T ss_pred HHHHHHHHHcCCceeehhhHHh
Confidence 9999999999999999999874
No 146
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.18 E-value=9.5e-06 Score=80.19 Aligned_cols=96 Identities=21% Similarity=0.309 Sum_probs=70.3
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEecCC----HHHHHHHHHcCccEEEEccCCccCCC-CccchHHHHHHHHHHccCCCcE
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGVLT----AEDARIAVQAGAAGIIVSNHGARQLD-YVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v~~----~~~a~~a~~aG~d~I~vs~~gg~~~~-~~~~~~~~l~~i~~~~~~~ipv 283 (370)
++++..+.++++++.. |.+|...+ .+.++.+.++|+|.|.+++.--.|.+ .+...+..+.++.+.+ ++||
T Consensus 117 ~p~l~~~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPV 191 (369)
T TIGR01304 117 KPELLGERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPV 191 (369)
T ss_pred ChHHHHHHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCE
Confidence 4445556788888753 77787643 35678999999999999542211222 2223456677777766 7999
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
|+ |++.+.+++.+++.+|||+|++|+
T Consensus 192 I~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 192 IA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred EE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 98 999999999999999999999885
No 147
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=98.18 E-value=3.9e-05 Score=69.79 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHcCccEEEEccCC--ccCCC-CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHG--ARQLD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~g--g~~~~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.+.+++..+.+.|+|+|.++.-. ++... ..+..++.+.++++.. .++||++.||| +.+++.+++.+||++|.+|
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAV-GDIPIVAIGGI-TPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCc-CHHHHHHHHHcCCCEEEEe
Confidence 357889999999999999986421 11111 1122377888887766 24999999999 6899999999999999999
Q ss_pred HHHHH
Q 017492 310 RPVVY 314 (370)
Q Consensus 310 r~~l~ 314 (370)
+.++.
T Consensus 189 s~i~~ 193 (212)
T PRK00043 189 SAITG 193 (212)
T ss_pred HHhhc
Confidence 98753
No 148
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.17 E-value=7.2e-05 Score=67.97 Aligned_cols=95 Identities=18% Similarity=0.208 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCcEEEEec--C-CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 216 DVKWLQTITKLPILVKGV--L-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v--~-~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.++++++ .++++++-.. . ..++++.+.+.|+|.|.+.. |......++..+..+.++++.+. ..++.++||| +.
T Consensus 94 ~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~-~~~i~v~GGI-~~ 169 (206)
T TIGR03128 94 AVKAAKK-HGKEVQVDLINVKDKVKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK-EARVAVAGGI-NL 169 (206)
T ss_pred HHHHHHH-cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC-CCcEEEECCc-CH
Confidence 4555555 5888887643 2 24788889999999998842 21111233445566777766653 4677789999 77
Q ss_pred HHHHHHHHhCCCEEEEcHHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l~ 314 (370)
+++.+++..||+.+.+||+++.
T Consensus 170 ~n~~~~~~~Ga~~v~vGsai~~ 191 (206)
T TIGR03128 170 DTIPDVIKLGPDIVIVGGAITK 191 (206)
T ss_pred HHHHHHHHcCCCEEEEeehhcC
Confidence 8999999999999999999753
No 149
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.14 E-value=1.3e-05 Score=75.44 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
.+.++.+.++|+|.|.+++.. +......+.++.+.++++.. ++||+++|||++.+|+.+++..| |++|++|+++..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~-~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMD-KDGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY 234 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcC-cccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence 355788999999999995421 11112345677888888876 79999999999999999999988 999999999875
No 150
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=98.09 E-value=0.00034 Score=64.54 Aligned_cols=137 Identities=23% Similarity=0.258 Sum_probs=90.2
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|...+.+.+++++++|++.+ |+|. + .|. ++ .+-.
T Consensus 8 ~ad~~~l~~~i~~l~~~g~~~l--H~Dv--m--------DG~-----------------------------Fv---pn~t 43 (220)
T PRK08883 8 SADFARLGEDVEKVLAAGADVV--HFDV--M--------DNH-----------------------------YV---PNLT 43 (220)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEec--c--------cCc-----------------------------cc---Cccc
Confidence 3566777889999999998875 4441 0 000 01 1223
Q ss_pred ccHHHHHHHHHh-cCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccC---------------Cc---------cC-----
Q 017492 212 LSWKDVKWLQTI-TKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ----- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~-~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~---------------gg---------~~----- 259 (370)
|..+.++++|+. ++.|+=+=+ +.+++. .....++|+|.|.+.-. |- +.
T Consensus 44 fg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 44 FGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred cCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 566788888887 577866654 345554 67778889998888421 10 00
Q ss_pred -----CC-----------Cc----cchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| +| +..++.+.++++... .++||.++|||. .+++.+....|||.+.+||+++
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 01 12 224455666665542 148999999998 7899999999999999999865
No 151
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=98.09 E-value=0.00018 Score=65.00 Aligned_cols=71 Identities=31% Similarity=0.355 Sum_probs=52.3
Q ss_pred HHHHHHHcCccEEEEccCCccCC-----------CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEE
Q 017492 238 DARIAVQAGAAGIIVSNHGARQL-----------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~-----------~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V 306 (370)
-|..+.++|+|.|.. .||+.- ....|++....+|.+++ ++||+...|++. ..+--|+++||.+|
T Consensus 137 LA~~L~~~GaDiIQT--EGgtss~p~~~g~lglIekaapTLAaay~ISr~v--~iPVlcASGlS~-vT~PmAiaaGAsGV 211 (242)
T PF04481_consen 137 LAEDLVKAGADIIQT--EGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAV--SIPVLCASGLSA-VTAPMAIAAGASGV 211 (242)
T ss_pred HHHHHHHhCCcEEEc--CCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhcc--CCceEeccCcch-hhHHHHHHcCCccc
Confidence 367777888887765 455421 12235666777777776 899999999987 45567899999999
Q ss_pred EEcHHHH
Q 017492 307 FIGRPVV 313 (370)
Q Consensus 307 ~igr~~l 313 (370)
++|++.=
T Consensus 212 GVGSavn 218 (242)
T PF04481_consen 212 GVGSAVN 218 (242)
T ss_pred chhHHhh
Confidence 9999763
No 152
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=98.09 E-value=4.2e-05 Score=72.71 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCC
Q 017492 214 WKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGV 289 (370)
Q Consensus 214 ~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI 289 (370)
.+.++++|+..+ ...+.-.+.+.+++..+.++|+|.|.+.|- +.+.+.++++..+ .++.+.++|||
T Consensus 169 ~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~----------~~e~l~~~v~~~~~~~~~~~ieAsGgI 238 (273)
T PRK05848 169 KEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNM----------SVEEIKEVVAYRNANYPHVLLEASGNI 238 (273)
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 456888888875 233344678999999999999999988762 4556666666543 36779999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.+.+.++..+|+|.+.+|++..
T Consensus 239 -t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 239 -TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred -CHHHHHHHHHcCCCEEEeChhhc
Confidence 99999999999999999999764
No 153
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.08 E-value=3.1e-05 Score=72.34 Aligned_cols=76 Identities=24% Similarity=0.277 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+-++.+.++|+|.|.+.+-.+ .....++.++.+.++++.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 30 ~~~a~~~~~~G~~~i~i~d~~~-~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~ 105 (243)
T cd04731 30 VELAKRYNEQGADELVFLDITA-SSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVE 105 (243)
T ss_pred HHHHHHHHHCCCCEEEEEcCCc-ccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhh
Confidence 3567888899999988865322 1123455778888888876 79999999999999999999999999999998874
No 154
>PLN02411 12-oxophytodienoate reductase
Probab=98.08 E-value=0.00012 Score=73.35 Aligned_cols=101 Identities=13% Similarity=0.027 Sum_probs=68.6
Q ss_pred CccHHHHHHHHHhcC-CcEEEEecCC-----------HH----HHHHHHH----c--CccEEEEccCCcc---CCC---C
Q 017492 211 SLSWKDVKWLQTITK-LPILVKGVLT-----------AE----DARIAVQ----A--GAAGIIVSNHGAR---QLD---Y 262 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~-~Pv~vK~v~~-----------~~----~a~~a~~----a--G~d~I~vs~~gg~---~~~---~ 262 (370)
.|..++|+.||+.++ -.|.+|+... .+ .++.+.+ . |+|+|.||..... +.. .
T Consensus 216 RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~ 295 (391)
T PLN02411 216 RFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRH 295 (391)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCccccc
Confidence 467889999999984 3588887631 11 2333433 2 5999999853210 000 1
Q ss_pred ccch--HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 263 VPAT--IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 263 ~~~~--~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
+... .....++++.+ ++||++.||| +.+++.++|+.| ||.|.+||+++.
T Consensus 296 ~~~~~~~~~a~~ik~~v--~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 296 GSEEEEAQLMRTLRRAY--QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred CCccchhHHHHHHHHHc--CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 1111 12446677776 7899999999 579999999999 999999999985
No 155
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=98.08 E-value=0.00093 Score=63.92 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=75.4
Q ss_pred CCHHHHHHHH-HcCccEEEEc--c-CCccCCCCccchHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHhCCCEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G--GI~~~~dv~kalalGAd~V~ 307 (370)
.++++++.+. +.|+|++-++ + ||-+ .+...-.++.|.++++.+ ++|+++-| ||.. +++.+++..|++.|-
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~-~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~~-e~~~~~i~~G~~kin 228 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMY-NGDPNLRFDRLQEINDVV--HIPLVLHGGSGISP-EDFKKCIQHGIRKIN 228 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCC-CCCCccCHHHHHHHHHhc--CCCEEEECCCCCCH-HHHHHHHHcCCcEEE
Confidence 5789998887 4699999994 3 4422 222234678899999887 79999999 8855 889999999999999
Q ss_pred EcHHHHHHHHhc--------C----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 308 IGRPVVYSLAAE--------G----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 308 igr~~l~~~~~~--------G----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+.+.+..+.... . ..-.....+.+++..+..|+.+|..
T Consensus 229 v~T~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 278 (281)
T PRK06806 229 VATATFNSVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSE 278 (281)
T ss_pred EhHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999887642110 0 0112333445666667777777643
No 156
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=5.1e-05 Score=74.52 Aligned_cols=202 Identities=20% Similarity=0.216 Sum_probs=132.2
Q ss_pred ecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCC--CCHHHHh---------------------ccCC---C
Q 017492 70 ISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST--SSVEEVA---------------------STGP---G 123 (370)
Q Consensus 70 l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~--~~~eei~---------------------~~~~---~ 123 (370)
+..=+++|||-=. |++++.-.|-+.|..++-+..-. .-++-+. ...| .
T Consensus 9 y~nk~iLApMvr~------G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~ 82 (477)
T KOG2334|consen 9 YRNKLILAPMVRA------GELPMRLLALQYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENS 82 (477)
T ss_pred hcCcEeeehHHHh------ccchHHHHHHHhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcC
Confidence 4566889998322 57789999999999887764311 0011100 0111 3
Q ss_pred ceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHH
Q 017492 124 IRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAY 203 (370)
Q Consensus 124 ~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (370)
...||+- ..+.+...+.. +........+.++++||-. |+.-.+ .+..
T Consensus 83 rlilQ~g-T~sa~lA~e~A-~lv~nDvsgidiN~gCpK~----------fSi~~g---------------------mgaa 129 (477)
T KOG2334|consen 83 RLILQIG-TASAELALEAA-KLVDNDVSGIDINMGCPKE----------FSIHGG---------------------MGAA 129 (477)
T ss_pred eEEEEec-CCcHHHHHHHH-HHhhcccccccccCCCCCc----------cccccC---------------------CCch
Confidence 4577764 23444433322 2233467778999999842 221100 0111
Q ss_pred hhhcCCCCccHHHHHHHHHhcCCcEEEEec--C----CHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHH
Q 017492 204 VAGQIDRSLSWKDVKWLQTITKLPILVKGV--L----TAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVK 275 (370)
Q Consensus 204 ~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v--~----~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~ 275 (370)
+. .+++....++..+.+...+|+..|.. . +.+..++....|+.+|.| |+.+. ...-+++.+.+.++.+
T Consensus 130 lL--t~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~v--h~rt~d~r~~~~~~~~~i~~i~~ 205 (477)
T KOG2334|consen 130 LL--TDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITV--HCRTRDERNQEPATKDYIREIAQ 205 (477)
T ss_pred hh--cCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEE--EeeccccCCCCCCCHHHHHHHHH
Confidence 11 35566677899999999999999985 2 335578888999999999 54431 1234667788999988
Q ss_pred HccCCCcEEEecCCCC---HHHHHHHHH-hCCCEEEEcHHHHHH
Q 017492 276 ATQGRIPVFLDGGVRR---GTDVFKALA-LGASGIFIGRPVVYS 315 (370)
Q Consensus 276 ~~~~~ipvi~~GGI~~---~~dv~kala-lGAd~V~igr~~l~~ 315 (370)
.++ .+|||+.||..+ ..|+.+... .|++.||+.|...+.
T Consensus 206 ~~~-~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 206 ACQ-MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred Hhc-cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcC
Confidence 873 499999999998 899988876 799999999976543
No 157
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.06 E-value=6.4e-05 Score=70.17 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=63.4
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
++-++| .+-+.++++++.++|++.|-|-|..=+.+ ...++...++...++.+.-++..+||++++|+.+....|||
T Consensus 156 Gm~~LV-EVh~~eEl~rAl~~ga~iIGINnRdL~tf---~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~ 231 (254)
T COG0134 156 GMEVLV-EVHNEEELERALKLGAKIIGINNRDLTTL---EVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGAD 231 (254)
T ss_pred CCeeEE-EECCHHHHHHHHhCCCCEEEEeCCCcchh---eecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCC
Confidence 444432 35677788888888888777766533222 22333455555666667889999999999999999999999
Q ss_pred EEEEcHHHHHH
Q 017492 305 GIFIGRPVVYS 315 (370)
Q Consensus 305 ~V~igr~~l~~ 315 (370)
++.||+++|..
T Consensus 232 a~LVG~slM~~ 242 (254)
T COG0134 232 AFLVGEALMRA 242 (254)
T ss_pred EEEecHHHhcC
Confidence 99999999863
No 158
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.06 E-value=0.00014 Score=65.76 Aligned_cols=93 Identities=22% Similarity=0.161 Sum_probs=67.7
Q ss_pred HHHHHHHhcCCcEEE--EecCCHHHHHHHHHcCccEEEEcc-CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 216 DVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~v--K~v~~~~~a~~a~~aG~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.++.+++ .++++++ =+..+++++..+...|+|.+.+.- ..+ +..+.....+.+.++.+. .++||+++|||+ .
T Consensus 95 ~i~~~~~-~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~-~~~~~~~~~~~i~~~~~~--~~~~i~~~GGI~-~ 169 (202)
T cd04726 95 AVKAAKK-YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDA-QAAGGWWPEDDLKKVKKL--LGVKVAVAGGIT-P 169 (202)
T ss_pred HHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccc-cccCCCCCHHHHHHHHhh--cCCCEEEECCcC-H
Confidence 4555554 4777765 356788888889999999988831 111 111124455667777654 379999999996 8
Q ss_pred HHHHHHHHhCCCEEEEcHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l 313 (370)
+++.+++..|||+|.+||+++
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhc
Confidence 999999999999999999975
No 159
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.05 E-value=3.8e-05 Score=71.24 Aligned_cols=102 Identities=26% Similarity=0.309 Sum_probs=74.3
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccCC-------------cc---CCC--------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHG-------------AR---QLD-------------- 261 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~g-------------g~---~~~-------------- 261 (370)
..+.++++.+.+++||++-+ +.+.++++.+.+.|++.+++...- |+ .+|
T Consensus 61 n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~ 140 (228)
T PRK04128 61 NLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEE 140 (228)
T ss_pred hHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEc
Confidence 57788898888899999875 689999999999999999885210 11 000
Q ss_pred CccchHHHHHH------------------------HHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 262 YVPATIMALEE------------------------VVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 262 ~~~~~~~~l~~------------------------i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
......+.+.. +.+.. .++||+++|||++.+|+.++..+|+++|.+|++|+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d~l~~~~-~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g 217 (228)
T PRK04128 141 SSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIEEIERFW-GDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEG 217 (228)
T ss_pred CCCCHHHHHHHHHHHhCEEEEEeccchhcccCHHHHHHhc-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcC
Confidence 11112222222 22221 2689999999999999999999999999999999764
No 160
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=98.04 E-value=0.00029 Score=71.40 Aligned_cols=94 Identities=21% Similarity=0.256 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCcEEEEec--CC-HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 216 DVKWLQTITKLPILVKGV--LT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v--~~-~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.++.+++ .+.++++..+ .+ .+.++.+.+.|+|+|.++ .|.+....++..++.+.++++.+ ++||++.||| +.
T Consensus 99 ~i~~a~~-~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~~~~~~~~~~l~~l~~~~--~iPI~a~GGI-~~ 173 (430)
T PRK07028 99 AVRAARK-YGVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQMLGKDPLELLKEVSEEV--SIPIAVAGGL-DA 173 (430)
T ss_pred HHHHHHH-cCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchhhcCCChHHHHHHHHhhC--CCcEEEECCC-CH
Confidence 4555555 5777776422 23 456788899999999774 22221112334456777777665 6999999999 67
Q ss_pred HHHHHHHHhCCCEEEEcHHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l~ 314 (370)
+++.++++.||+.+.+||.++.
T Consensus 174 ~n~~~~l~aGAdgv~vGsaI~~ 195 (430)
T PRK07028 174 ETAAKAVAAGADIVIVGGNIIK 195 (430)
T ss_pred HHHHHHHHcCCCEEEEChHHcC
Confidence 9999999999999999999764
No 161
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.04 E-value=3.4e-05 Score=72.13 Aligned_cols=100 Identities=18% Similarity=0.267 Sum_probs=76.1
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc--------------CCcc-------------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN--------------HGAR------------------- 258 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~--------------~gg~------------------- 258 (370)
..+.+++|.+.+ .|+.+.+ +.+.++++.+.++|++.+++.. +|.+
T Consensus 62 n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~ 140 (241)
T PRK14114 62 NLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLA 140 (241)
T ss_pred hHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCee
Confidence 577888888877 7988865 6789999999999999988753 1110
Q ss_pred --CC------------------------CC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHh-----C-CC
Q 017492 259 --QL------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALAL-----G-AS 304 (370)
Q Consensus 259 --~~------------------------~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalal-----G-Ad 304 (370)
.. |+ .-+.++.+.++.+.. ++||+++||+++.+|+.++..+ | ++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~--~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~ 218 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTRKIAIEA--EVKVFAAGGISSENSLKTAQRVHRETNGLLK 218 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHhcccccCCcEE
Confidence 00 01 124556677776664 8999999999999999998887 6 99
Q ss_pred EEEEcHHHHHH
Q 017492 305 GIFIGRPVVYS 315 (370)
Q Consensus 305 ~V~igr~~l~~ 315 (370)
+|.+|++++.+
T Consensus 219 gvivg~Al~~g 229 (241)
T PRK14114 219 GVIVGRAFLEG 229 (241)
T ss_pred EEEEehHHHCC
Confidence 99999998753
No 162
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.03 E-value=2.4e-05 Score=77.52 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=69.2
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEec--CCHHHHHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEE
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~ 285 (370)
++++..+.++++++. .+++.++.. ...+.++.+.++|+|.|+++++-..|.+.+.. .+..+.++.+.. ++|||+
T Consensus 116 ~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIa 192 (368)
T PRK08649 116 KPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIV 192 (368)
T ss_pred CHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEE
Confidence 344456678888875 555555542 23466889999999999994321112333332 355566666655 799999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr 310 (370)
|+|.+.+++.+++.+|||+|++|+
T Consensus 193 -G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 193 -GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred -eCCCCHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999996
No 163
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.03 E-value=3.5e-05 Score=71.38 Aligned_cols=97 Identities=20% Similarity=0.316 Sum_probs=70.6
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-ccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+++..+.+.+. +.-|.-=...++..|+++.++||..|---+.. |+ .-|..+.+.|.-|.+.. ++||+.++||.+
T Consensus 126 tl~Aae~Lv~e-GF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGS--g~Gl~n~~~l~~i~e~~--~vpVivdAGIgt 200 (267)
T CHL00162 126 TLKAAEFLVKK-GFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGS--GQGLQNLLNLQIIIENA--KIPVIIDAGIGT 200 (267)
T ss_pred HHHHHHHHHHC-CCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCcCC
Confidence 34444444432 34444333467888999999999998753321 11 12455677888777754 799999999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~ 314 (370)
++|+.+++.+|||+|++.+++..
T Consensus 201 ~sDa~~AmElGaDgVL~nSaIak 223 (267)
T CHL00162 201 PSEASQAMELGASGVLLNTAVAQ 223 (267)
T ss_pred HHHHHHHHHcCCCEEeecceeec
Confidence 99999999999999999998764
No 164
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=98.02 E-value=0.00017 Score=68.58 Aligned_cols=88 Identities=26% Similarity=0.393 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCcEEEEe---------cCCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 216 DVKWLQTITKLPILVKG---------VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~---------v~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+.++...+++|+++-. ..+.+. ++.+.+.|+|+|..+-.| ..+.+.++.+.. ++|
T Consensus 130 ~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~---------~~~~l~~~~~~~--~ip 198 (267)
T PRK07226 130 EVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG---------DPESFREVVEGC--PVP 198 (267)
T ss_pred HHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC---------CHHHHHHHHHhC--CCC
Confidence 34444455688987631 123333 577889999999986321 346677666644 799
Q ss_pred EEEecCCC--CHHHHHHHH----HhCCCEEEEcHHHHH
Q 017492 283 VFLDGGVR--RGTDVFKAL----ALGASGIFIGRPVVY 314 (370)
Q Consensus 283 vi~~GGI~--~~~dv~kal----alGAd~V~igr~~l~ 314 (370)
|+++|||+ +.+++++.+ .+||+++.+||.++.
T Consensus 199 V~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 199 VVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ 236 (267)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence 99999999 777776664 899999999999874
No 165
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.00 E-value=3.6e-05 Score=72.51 Aligned_cols=77 Identities=25% Similarity=0.265 Sum_probs=63.3
Q ss_pred CH-HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 235 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 235 ~~-~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
++ +.|+.+.+.|+|.+.+.+.-+. .......++.+.++.+.+ ++||+++|||++.+|+.+++.+||+.|.+|++++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~ 107 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS-SEGRTTMIDVVERTAETV--FIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAV 107 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc-cccChhhHHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHh
Confidence 44 5678888999999999764321 113456778888898877 7999999999999999999999999999999876
Q ss_pred H
Q 017492 314 Y 314 (370)
Q Consensus 314 ~ 314 (370)
.
T Consensus 108 ~ 108 (254)
T TIGR00735 108 K 108 (254)
T ss_pred h
Confidence 4
No 166
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.00 E-value=3.5e-05 Score=72.50 Aligned_cols=76 Identities=24% Similarity=0.291 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.++.+.+.|++.|.+.+-...+ ......++.+.++.+.+ ++||+++|||++.+|+.+++..||+.|++|+.++.
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~--~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~ 108 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQV--FIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA 108 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhC--CCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence 366888889999999997543211 23356788899998877 79999999999999999999999999999998765
No 167
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.98 E-value=0.00011 Score=65.54 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccC---CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQ---LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~---~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
.+.+++..+.+.|+|+|.++....+. ....+..++.+.++++.. ++||++.|||. .+++.+++.+||++|.+|+
T Consensus 103 ~t~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 103 HSLEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELV--EIPVVAIGGIT-PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence 57889999999999999986431111 111345667788777654 79999999995 6999999999999999999
Q ss_pred HHHH
Q 017492 311 PVVY 314 (370)
Q Consensus 311 ~~l~ 314 (370)
.++.
T Consensus 180 ~i~~ 183 (196)
T cd00564 180 AITG 183 (196)
T ss_pred Hhhc
Confidence 9763
No 168
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.97 E-value=6.4e-05 Score=70.00 Aligned_cols=97 Identities=25% Similarity=0.363 Sum_probs=64.5
Q ss_pred cHHHHHHHHHh---cCCcEEEEecCCHHH-------------HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH
Q 017492 213 SWKDVKWLQTI---TKLPILVKGVLTAED-------------ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA 276 (370)
Q Consensus 213 ~~~~i~~ir~~---~~~Pv~vK~v~~~~~-------------a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~ 276 (370)
..+.++++++. +++|+++-..+..++ ++.+.++|+|.|.++.. +. ........+.+.++.+.
T Consensus 110 ~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~-~~~t~~~~~~~~~~~~~ 187 (236)
T PF01791_consen 110 VIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG-KP-VGATPEDVELMRKAVEA 187 (236)
T ss_dssp HHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SS-SCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cc-ccccHHHHHHHHHHHHh
Confidence 34455555554 478888775444333 46778999999999754 11 11222333445555443
Q ss_pred ccCCCc----EEEecCC------CCHHHHHHHHHhCC--CEEEEcHHHH
Q 017492 277 TQGRIP----VFLDGGV------RRGTDVFKALALGA--SGIFIGRPVV 313 (370)
Q Consensus 277 ~~~~ip----vi~~GGI------~~~~dv~kalalGA--d~V~igr~~l 313 (370)
. .+| |.++||| ++.+++.+++.+|| .++..||.++
T Consensus 188 ~--~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 188 A--PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIW 234 (236)
T ss_dssp H--SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHH
T ss_pred c--CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 3 566 9999999 99999999999999 8888888754
No 169
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.97 E-value=7.8e-05 Score=69.85 Aligned_cols=100 Identities=18% Similarity=0.056 Sum_probs=74.6
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC---------------Ccc--------------C---
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GAR--------------Q--- 259 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~---------------gg~--------------~--- 259 (370)
..+.++++.+.+.+|+.+.+ +.+.++++.+.+.|+|.|+++.. |.+ .
T Consensus 62 n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~ 141 (243)
T TIGR01919 62 NEMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGN 141 (243)
T ss_pred hHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEEC
Confidence 56688999998899998865 68999999999999999988521 110 0
Q ss_pred --C-----------------------------CC--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHH---HhCC
Q 017492 260 --L-----------------------------DY--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKAL---ALGA 303 (370)
Q Consensus 260 --~-----------------------------~~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kal---alGA 303 (370)
+ |+ .-+.++.+.++.+.. ++||+++||+++.+|+.+.- ..|+
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~s~eDl~~l~~l~~~Gv 219 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSSLLDDLRAIKYLDEGGV 219 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcCCHHHHHHHHhhccCCe
Confidence 0 00 112344555555543 79999999999999998763 3599
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
++|.+|++++.
T Consensus 220 ~gvivg~Al~~ 230 (243)
T TIGR01919 220 SVAIGGKLLYA 230 (243)
T ss_pred eEEEEhHHHHc
Confidence 99999999875
No 170
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.94 E-value=0.0017 Score=62.23 Aligned_cols=108 Identities=24% Similarity=0.332 Sum_probs=77.7
Q ss_pred CCHHHHHHHHH-cCccEEEEc--c-CCccCCCCccchHHHHHHHHHHccCCCcEEEec--CCCCHHHHHHHHHhCCCEEE
Q 017492 234 LTAEDARIAVQ-AGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDG--GVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 234 ~~~~~a~~a~~-aG~d~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G--GI~~~~dv~kalalGAd~V~ 307 (370)
.++++|+.+.+ .|+|++.++ + ||-.. ....-.++.|.+|++.+ ++|+++=| ||.. +++.+++..|++.|-
T Consensus 153 t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~-~~~~l~~e~L~~i~~~~--~iPlv~hGgSGi~~-e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 153 ADPDEAEQFVKETGVDYLAAAIGTSHGKYK-GEPGLDFERLKEIKELT--NIPLVLHGASGIPE-EQIKKAIKLGIAKIN 228 (282)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccC-CCCccCHHHHHHHHHHh--CCCEEEECCCCCCH-HHHHHHHHcCCCEEE
Confidence 47899999886 999999975 2 44221 12233578899999887 79999999 9965 889999999999999
Q ss_pred EcHHHHHHHHhc-------C------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 308 IGRPVVYSLAAE-------G------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 308 igr~~l~~~~~~-------G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+++.+..+.... . ..-.....+.+.+.+++.|..+|..
T Consensus 229 v~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gs~ 279 (282)
T TIGR01859 229 IDTDCRIAFTAAIRKVLTEKKDEYDPRKILGPAREAIKETVKEKMRLFGSA 279 (282)
T ss_pred ECcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999876542210 0 1223344566777778888887753
No 171
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=97.94 E-value=0.003 Score=58.01 Aligned_cols=171 Identities=20% Similarity=0.193 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------CCH----HHHhccCCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecC
Q 017492 89 GEYATARAASAAGTIMTLSSWST------SSV----EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD 158 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~~------~~~----eei~~~~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd 158 (370)
.|+.-.+.+.+.|..-+++|.-+ .+. .++.+..+++..+|++ ..+.+.+.+..++..+.. ..++|-+
T Consensus 8 Ad~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~g~vs~qv~-~~~~~~mi~~a~~l~~~~-~~i~iKI- 84 (213)
T TIGR00875 8 ANVEEIKKAAELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVEGPVSAETI-SLDAEGMVEEAKELAKLA-PNIVVKI- 84 (213)
T ss_pred CCHHHHHHHHhcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcCCcEEEEEe-eCCHHHHHHHHHHHHHhC-CCeEEEe-
Confidence 56777888888888777776532 223 3344444567888986 445554444444443332 2233211
Q ss_pred CCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc---HHHHHHHHHhcCCcEEEEecCC
Q 017492 159 TPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKDVKWLQTITKLPILVKGVLT 235 (370)
Q Consensus 159 ~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~i~~ir~~~~~Pv~vK~v~~ 235 (370)
| .+ .+.++.+++ -++++-+=.+.+
T Consensus 85 -----------------P-----------------------------------~T~~Gl~A~~~L~~-~Gi~v~~T~vfs 111 (213)
T TIGR00875 85 -----------------P-----------------------------------MTSEGLKAVKILKK-EGIKTNVTLVFS 111 (213)
T ss_pred -----------------C-----------------------------------CCHHHHHHHHHHHH-CCCceeEEEecC
Confidence 1 12 334555554 388988888999
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.+.|..+.++|+++|.. .-||--+.+...+..+.++.+.+ +.+..|++.+ +|+..++.+++.+|+|.|-+.-.+
T Consensus 112 ~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIlaAS-~r~~~~v~~~~~~G~d~vTip~~v 188 (213)
T TIGR00875 112 AAQALLAAKAGATYVSP--FVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIAAS-VRHPRHVLEAALIGADIATMPLDV 188 (213)
T ss_pred HHHHHHHHHcCCCEEEe--ecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEEec-cCCHHHHHHHHHcCCCEEEcCHHH
Confidence 99999999999998876 33444444555666666666654 3467777655 999999999999999999999999
Q ss_pred HHHHHh
Q 017492 313 VYSLAA 318 (370)
Q Consensus 313 l~~~~~ 318 (370)
+..+..
T Consensus 189 l~~l~~ 194 (213)
T TIGR00875 189 MQQLFN 194 (213)
T ss_pred HHHHHc
Confidence 887653
No 172
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.93 E-value=0.00022 Score=75.83 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=61.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCC
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGAS 304 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd 304 (370)
++-++| .+-+.++++++.++|++.|-|-|.. +.+-...+....++...++.++.+++.+||.+++|+..+..+|||
T Consensus 160 Gme~Lv-Evh~~~el~~a~~~ga~iiGINnRd---L~tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~d 235 (695)
T PRK13802 160 GMTVLV-ETHTREEIERAIAAGAKVIGINARN---LKDLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGAD 235 (695)
T ss_pred CCeEEE-EeCCHHHHHHHHhCCCCEEEEeCCC---CccceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCC
Confidence 444433 3566777777777777777665543 222222334445555556667889999999999999999999999
Q ss_pred EEEEcHHHHHH
Q 017492 305 GIFIGRPVVYS 315 (370)
Q Consensus 305 ~V~igr~~l~~ 315 (370)
+|.||+.+|.+
T Consensus 236 avLIGeslm~~ 246 (695)
T PRK13802 236 AVLVGEGVATA 246 (695)
T ss_pred EEEECHHhhCC
Confidence 99999988753
No 173
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.92 E-value=0.00021 Score=66.30 Aligned_cols=82 Identities=27% Similarity=0.449 Sum_probs=60.6
Q ss_pred HhcCCcEEEEec---------CCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 222 TITKLPILVKGV---------LTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 222 ~~~~~Pv~vK~v---------~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
..+++|+++=.. .+.+. ++.+.++|+|+|.+++.+ ..+.+.++.+.. .+||++.||
T Consensus 119 ~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---------~~~~~~~i~~~~--~~pvv~~GG 187 (235)
T cd00958 119 HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---------DAESFKEVVEGC--PVPVVIAGG 187 (235)
T ss_pred HHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---------CHHHHHHHHhcC--CCCEEEeCC
Confidence 456888887321 12333 456889999999995422 456777777765 789999999
Q ss_pred C--CCHHH----HHHHHHhCCCEEEEcHHHHH
Q 017492 289 V--RRGTD----VFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 289 I--~~~~d----v~kalalGAd~V~igr~~l~ 314 (370)
+ .+.+| +..++.+||++|.+||.++.
T Consensus 188 ~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 188 PKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 8 66666 77778899999999999874
No 174
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=97.92 E-value=0.0023 Score=58.66 Aligned_cols=101 Identities=21% Similarity=0.192 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCC
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 290 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~ 290 (370)
.+.++.+++. ++++-+-.+.+.+.+..+.++|+++|.. +-||--+.+...+..+.++.+.+. .+..|++ .|++
T Consensus 91 l~ai~~L~~~-gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP--~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~-As~r 166 (211)
T cd00956 91 LKAIKKLSEE-GIKTNVTAIFSAAQALLAAKAGATYVSP--FVGRIDDLGGDGMELIREIRTIFDNYGFDTKILA-ASIR 166 (211)
T ss_pred HHHHHHHHHc-CCceeeEEecCHHHHHHHHHcCCCEEEE--ecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEe-cccC
Confidence 3456666654 7899988999999999999999999654 445544555566666666666542 2344555 5699
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 291 RGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+..++..++.+|||.|-+.-.++..+..
T Consensus 167 ~~~ei~~a~~~Gad~vTv~~~vl~~l~~ 194 (211)
T cd00956 167 NPQHVIEAALAGADAITLPPDVLEQLLK 194 (211)
T ss_pred CHHHHHHHHHcCCCEEEeCHHHHHHHhc
Confidence 9999999999999999999998887654
No 175
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.91 E-value=0.00084 Score=62.22 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=71.8
Q ss_pred HHHHHHHHhcCCcEEEEecC-C-HHHHHHHHHcC-ccEEEEcc-CCcc-CCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 215 KDVKWLQTITKLPILVKGVL-T-AEDARIAVQAG-AAGIIVSN-HGAR-QLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~-~-~~~a~~a~~aG-~d~I~vs~-~gg~-~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.++++++. +.-+.+-... + .+.++...+.| +|+|.+.. +.|. .....+..++.+.++++.. .++||.++|||
T Consensus 106 ~~~~~i~~~-g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~-~~~~I~a~GGI 183 (229)
T PLN02334 106 RLIQQIKSA-GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY-PELDIEVDGGV 183 (229)
T ss_pred HHHHHHHHC-CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC-CCCcEEEeCCC
Confidence 456666553 3322222221 3 44555555664 99997643 2222 1223344566677776653 35799999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAM 339 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m 339 (370)
+.+++.+.+.+|||.+.+||+++.+ +.....++.++++++..|
T Consensus 184 -~~e~i~~l~~aGad~vvvgsai~~~------~d~~~~~~~l~~~~~~~~ 226 (229)
T PLN02334 184 -GPSTIDKAAEAGANVIVAGSAVFGA------PDYAEVISGLRASVEKAA 226 (229)
T ss_pred -CHHHHHHHHHcCCCEEEEChHHhCC------CCHHHHHHHHHHHHHHhh
Confidence 6799999999999999999986531 223455666666666554
No 176
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.90 E-value=0.0006 Score=61.75 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=48.7
Q ss_pred HHHHHHHHcCccEEEEcc-C-CccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHH
Q 017492 237 EDARIAVQAGAAGIIVSN-H-GARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~-~-gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~ 311 (370)
+.++.. ..++|+|.+.. + |++.........+.+.++++... .++|+++.|||+. +++.+++..|||++.+||+
T Consensus 119 ~~~~~~-~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsa 196 (211)
T cd00429 119 EVLEPY-LDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSA 196 (211)
T ss_pred HHHHHH-HhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHH
Confidence 334433 33478876643 2 22211122233344555555431 2489999999996 9999999999999999999
Q ss_pred HHH
Q 017492 312 VVY 314 (370)
Q Consensus 312 ~l~ 314 (370)
++.
T Consensus 197 i~~ 199 (211)
T cd00429 197 LFG 199 (211)
T ss_pred HhC
Confidence 873
No 177
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.86 E-value=8.3e-05 Score=75.53 Aligned_cols=129 Identities=17% Similarity=0.228 Sum_probs=84.6
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC--C--------------c------------------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH--G--------------A------------------ 257 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~--g--------------g------------------ 257 (370)
++++++.+|+.+++||+.|- +.++.....+..+|||+|.+.-. + |
T Consensus 98 s~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~ 177 (454)
T PRK09427 98 SFDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIA 177 (454)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHh
Confidence 67788888888888998886 35666666666667776655210 0 0
Q ss_pred ----------cCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHH
Q 017492 258 ----------RQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRV 327 (370)
Q Consensus 258 ----------~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~ 327 (370)
|.+.+-........++...++.++.+++.+||.+++|+..+ ..|||+|.+|..+|.+ +...+.
T Consensus 178 ~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~-~~~~davLiG~~lm~~------~d~~~~ 250 (454)
T PRK09427 178 LGAKVIGINNRNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVREL-SPFANGFLIGSSLMAE------DDLELA 250 (454)
T ss_pred CCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHH-HhcCCEEEECHHHcCC------CCHHHH
Confidence 01111112233444555556667889999999999999775 5589999999999864 112223
Q ss_pred HHHHHHHHHHHHHHcCCCChhhhc
Q 017492 328 LEMLREEFELAMALSGCRSLKEIT 351 (370)
Q Consensus 328 l~~l~~el~~~m~~~G~~~l~~l~ 351 (370)
+..+ +......||.++.+|.+
T Consensus 251 ~~~L---~~~~vKICGit~~eda~ 271 (454)
T PRK09427 251 VRKL---ILGENKVCGLTRPQDAK 271 (454)
T ss_pred HHHH---hccccccCCCCCHHHHH
Confidence 3333 22346789999988876
No 178
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=97.85 E-value=0.0011 Score=63.14 Aligned_cols=88 Identities=23% Similarity=0.248 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCC
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVR 290 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~ 290 (370)
.+.++.+|+..+-..+.-.+.+.+++..+.++|+|+|.+++-. +. .+.++.+.++ .++|++++|||
T Consensus 171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~-------p~---~l~~~~~~~~~~~~~i~i~AsGGI- 239 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFS-------PE---ELAELVPKLRSLAPPVLLAAAGGI- 239 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCC-------HH---HHHHHHHHHhccCCCceEEEECCC-
Confidence 3567888876532223334578999999999999999997631 22 2233333221 36999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~ 312 (370)
+.+++.++...|+|++.+|..+
T Consensus 240 ~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 240 NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred CHHHHHHHHHcCCcEEEEChhh
Confidence 8899999999999999777653
No 179
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.83 E-value=0.0002 Score=67.77 Aligned_cols=121 Identities=21% Similarity=0.159 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.+..+.|+++||+.+.+++.||.. .+.. + +. -.--+.+.|+
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd------~~~~-----g--------------------g~--------~Rm~~p~~I~ 67 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPAD------IRAA-----G--------------------GV--------ARMADPKMIE 67 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCch------Hhhc-----C--------------------Ce--------eecCCHHHHH
Confidence 456778899999999999999862 1100 0 00 0012567899
Q ss_pred HHHHhcCCcEEEEecC-CHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHH
Q 017492 219 WLQTITKLPILVKGVL-TAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK 297 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v~-~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k 297 (370)
++++.+++||+.|--. ...+|+.+.++|+|.|.-+..- .|.-+....++..+ ++|++ .|+++-++++.
T Consensus 68 aIk~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~Te~l-------rpad~~~~~~K~~f--~~~fm--ad~~~l~EAlr 136 (293)
T PRK04180 68 EIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVL-------TPADEEYHIDKWDF--TVPFV--CGARNLGEALR 136 (293)
T ss_pred HHHHhCCCCeEEeehhhHHHHHHHHHHcCCCEEeccCCC-------CchHHHHHHHHHHc--CCCEE--ccCCCHHHHHH
Confidence 9999999999998754 3789999999999999643210 12223444444443 55555 57999999999
Q ss_pred HHHhCCCEEEEc
Q 017492 298 ALALGASGIFIG 309 (370)
Q Consensus 298 alalGAd~V~ig 309 (370)
++.+|||.|.--
T Consensus 137 ai~~GadmI~Tt 148 (293)
T PRK04180 137 RIAEGAAMIRTK 148 (293)
T ss_pred HHHCCCCeeecc
Confidence 999999988654
No 180
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.81 E-value=0.00022 Score=66.05 Aligned_cols=75 Identities=28% Similarity=0.356 Sum_probs=61.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|+|.+.+..-.|. ..+....++.+.++.+.+ .+||+++|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 34 ~~a~~~~~~g~~~i~v~dld~~-~~g~~~~~~~i~~i~~~~--~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~ 108 (233)
T PRK00748 34 AQAKAWEDQGAKWLHLVDLDGA-KAGKPVNLELIEAIVKAV--DIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK 108 (233)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCcccHHHHHHHHHHC--CCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 4578888999999998763221 123356778888888876 79999999999999999999999999999998875
No 181
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.81 E-value=0.00012 Score=67.78 Aligned_cols=76 Identities=34% Similarity=0.436 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.|+.+.+.|+|.+.|....+. .......++.+.++.+.+ .+|+++.|||++.+|+.+++..|||.|++|+..+.
T Consensus 32 ~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~ 107 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA-KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-ccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHh
Confidence 35678888999999999743221 112345678888888877 79999999999999999999999999999998764
No 182
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.80 E-value=0.00049 Score=64.79 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhC--CCEEEEcHHHH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPVV 313 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalG--Ad~V~igr~~l 313 (370)
.++.+.++.+.. ++||+++|||++.+|+.+...+| ...|.+|++++
T Consensus 195 d~el~~~l~~~~--~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 195 DEELVALLGEHS--PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred CHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHH
Confidence 455666666665 89999999999999999988874 68899999984
No 183
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.77 E-value=0.00034 Score=65.69 Aligned_cols=96 Identities=27% Similarity=0.277 Sum_probs=66.2
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-----CCHHH-----HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc----
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-----LTAED-----ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---- 277 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-----~~~~~-----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---- 277 (370)
...++|+++++.++-++.+|.+ ++.++ .+.+.++|+|+|..|..-+ .+.++.+.+.-+++.+
T Consensus 116 ~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~----~~gAt~edv~lm~~~i~~~~ 191 (257)
T PRK05283 116 VGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKV----PVNATLEAARIMLEVIRDMG 191 (257)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCC----CCCCCHHHHHHHHHHHHhcc
Confidence 3456788888876534667876 34332 3568899999999986421 2234555555554544
Q ss_pred -cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 278 -QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 278 -~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
++++.|-++||||+.+++.+++.+|.+. +|.-|+
T Consensus 192 ~~~~vgIKAsGGIrt~~~A~~~i~ag~~~--lg~~~~ 226 (257)
T PRK05283 192 VAKTVGFKPAGGVRTAEDAAQYLALADEI--LGADWA 226 (257)
T ss_pred cCCCeeEEccCCCCCHHHHHHHHHHHHHH--hChhhc
Confidence 3578999999999999999999999764 344444
No 184
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.76 E-value=0.0015 Score=60.28 Aligned_cols=95 Identities=27% Similarity=0.349 Sum_probs=62.2
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC--Ccc--CCCCc-cchHH-HHHHHHHHccCCCcEEEecCCC
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH--GAR--QLDYV-PATIM-ALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~--gg~--~~~~~-~~~~~-~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
++..++ .++.+++ .+.+.++++.+.+.|.|.|.+-.. -|+ ..... +.... .+..+++. ..++||++.|||+
T Consensus 107 v~~a~~-~Gl~~I~-~v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~-~~~~pvi~GggI~ 183 (223)
T PRK04302 107 VERAKK-LGLESVV-CVNNPETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKV-NPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHH-CCCeEEE-EcCCHHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhc-cCCCEEEEECCCC
Confidence 344443 3655443 456678888888999998876432 122 11111 11222 22333332 2368999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.+++..++..|||+|.+|++++.
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhC
Confidence 999999999999999999999985
No 185
>PRK06801 hypothetical protein; Provisional
Probab=97.76 E-value=0.0052 Score=58.89 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=74.3
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCc-cchHHHHHHHHHHccCCCcEEEecC--CCCHHHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYV-PATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvi~~GG--I~~~~dv~kalalGAd~V 306 (370)
.++++++... +.|+|.+-++. ||-+ ++. ...++.|.++++.+ ++|+++-|| |. .+++.+++.+|++.|
T Consensus 156 T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y--~~~~~l~~e~l~~i~~~~--~~PLVlHGGSgi~-~e~~~~~i~~Gi~KI 230 (286)
T PRK06801 156 TDPQLARDFVDRTGIDALAVAIGNAHGKY--KGEPKLDFARLAAIHQQT--GLPLVLHGGSGIS-DADFRRAIELGIHKI 230 (286)
T ss_pred CCHHHHHHHHHHHCcCEEEeccCCCCCCC--CCCCCCCHHHHHHHHHhc--CCCEEEECCCCCC-HHHHHHHHHcCCcEE
Confidence 4678888877 89999999953 3322 122 24778899998877 799999998 86 488999999999999
Q ss_pred EEcHHHHHHHHh-------cC------H-HHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA-------EG------E-KGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~-------~G------~-~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+..+... .. . .-.....+.+++.++..|+.+|..
T Consensus 231 Nv~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 283 (286)
T PRK06801 231 NFYTGMSQAALAAVEQRMTHRHAIYDEFAELLLGIEEAISDTVAQQMRIFGSA 283 (286)
T ss_pred EehhHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987654211 01 0 112333455666677777777643
No 186
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.75 E-value=0.00036 Score=66.85 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCCcE-EEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCC
Q 017492 214 WKDVKWLQTITKLPI-LVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGV 289 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv-~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI 289 (370)
.+.++.+|+..+... +--.+.+.+++..+.++|+|.|.++|-+ + +.+.++.+.+ ..++|+.++|||
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~-------~---e~l~~av~~~~~~~~~i~leAsGGI 252 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMP-------V---DLMQQAVQLIRQQNPRVKIEASGNI 252 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCC-------H---HHHHHHHHHHHhcCCCeEEEEECCC
Confidence 346888888775222 2234688999999999999999998632 3 3444443332 358999999999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.+++.++.++|+|.+.+|++..
T Consensus 253 -t~~ni~~ya~tGvD~Isvgsl~~ 275 (288)
T PRK07428 253 -TLETIRAVAETGVDYISSSAPIT 275 (288)
T ss_pred -CHHHHHHHHHcCCCEEEEchhhh
Confidence 68999999999999999999765
No 187
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.75 E-value=0.00034 Score=66.65 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=66.1
Q ss_pred HHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
.++.+|+..+ .+|. -.+-+.+++..+.++|+|+|.+.|- +.+.+.++.+..+.++|+.++||| +.++
T Consensus 179 av~~~r~~~~~~~I~-VEv~tleea~eA~~~gaD~I~LD~~----------~~e~l~~~v~~~~~~i~leAsGGI-t~~n 246 (277)
T PRK05742 179 AVAAAHRIAPGKPVE-VEVESLDELRQALAAGADIVMLDEL----------SLDDMREAVRLTAGRAKLEASGGI-NEST 246 (277)
T ss_pred HHHHHHHhCCCCeEE-EEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhCCCCcEEEECCC-CHHH
Confidence 4677776643 3332 3357899999999999999988652 345666666655458999999999 5799
Q ss_pred HHHHHHhCCCEEEEcHHHH
Q 017492 295 VFKALALGASGIFIGRPVV 313 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l 313 (370)
+.++..+|+|.+.+|.+..
T Consensus 247 i~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 247 LRVIAETGVDYISIGAMTK 265 (277)
T ss_pred HHHHHHcCCCEEEEChhhc
Confidence 9999999999999998654
No 188
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.75 E-value=0.00055 Score=61.61 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=61.7
Q ss_pred ecCCHHHHHHHHHcCccEEEEccCCccCCC-C--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 232 GVLTAEDARIAVQAGAAGIIVSNHGARQLD-Y--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 232 ~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~-~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
.+.+.+++..+.+.|+|+|.++.-..+..+ . .+..++.+.++.+... ++||++.||| +.+++.+++.+||++|.+
T Consensus 102 s~h~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~-~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 102 STHNLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI-DIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred eCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 357888888999999999998754322211 1 2235677777766542 5999999999 589999999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
|+.++.
T Consensus 180 ~~~i~~ 185 (196)
T TIGR00693 180 VSAIMQ 185 (196)
T ss_pred hHHhhC
Confidence 999863
No 189
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.74 E-value=0.0082 Score=57.81 Aligned_cols=79 Identities=23% Similarity=0.398 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHcCccEEEEc--c-CCccCCCCccchHHHHHHHHHHccCCCcEEEecC--CCCHHHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAVQAGAAGIIVS--N-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGG--VRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs--~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG--I~~~~dv~kalalGAd~V~i 308 (370)
.++++|..+.+.|+|++-++ + ||-+.-....-.++.|.+|.+.+. ++|+++=|| |.. +++.+++..|++.|-+
T Consensus 154 t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~~-e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 154 APIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIPD-DQIQEAIKLGVAKVNV 231 (293)
T ss_pred CCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCCH-HHHHHHHHcCCCEEEE
Confidence 47899999999999999998 3 554421122346788999998762 499999998 865 8899999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
++.+..
T Consensus 232 ~T~i~~ 237 (293)
T PRK07315 232 NTECQI 237 (293)
T ss_pred ccHHHH
Confidence 998764
No 190
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=97.74 E-value=0.0011 Score=64.39 Aligned_cols=168 Identities=15% Similarity=0.197 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCcchhHHhhh---h-cCCCCccccccccccccCccccccchhhHHHh--hhcCCCCcc
Q 017492 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKN---R-FTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV--AGQIDRSLS 213 (370)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~---~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~ 213 (370)
++.+.-++.|+.+|-|-.|...++....+++. . ..+|- -.+.+. ++.-+..++...|+-..+ ....+ +-.
T Consensus 143 ~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPv--LrKDFI-ID~yQI~eAr~~GADAVLLIaaiL~-~~~ 218 (338)
T PLN02460 143 EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPL--LCKEFI-VDAWQIYYARSKGADAILLIAAVLP-DLD 218 (338)
T ss_pred HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCE--eecccc-CCHHHHHHHHHcCCCcHHHHHHhCC-HHH
Confidence 45556678899999888888888777777653 2 33331 111110 000001111111111111 01011 112
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHH-----Hc-cCCCcEEEe
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVK-----AT-QGRIPVFLD 286 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~-----~~-~~~ipvi~~ 286 (370)
.+.+-++.+..++-++| .+-+.+++.++.++ |++.|-|-|..=..+..-+ ....++.. .+ +.++-+++.
T Consensus 219 L~~l~~~A~~LGme~LV-EVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl---~~t~~L~~~~~~~~i~~~~~~~VsE 294 (338)
T PLN02460 219 IKYMLKICKSLGMAALI-EVHDEREMDRVLGIEGVELIGINNRSLETFEVDI---SNTKKLLEGERGEQIREKGIIVVGE 294 (338)
T ss_pred HHHHHHHHHHcCCeEEE-EeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECH---HHHHHHhhhccccccCCCCeEEEEC
Confidence 33333444445666654 46888999999998 9998888775432222222 22233333 22 135668899
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
+||++++|+.....+|||+|.||..+|..
T Consensus 295 SGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 295 SGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 99999999999999999999999999863
No 191
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.72 E-value=0.00071 Score=62.48 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=67.4
Q ss_pred HHHHHHhcCCcEEEEe--cCCHHHHHHHHHcCccEEEEccCCccCC-CCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITKLPILVKG--VLTAEDARIAVQAGAAGIIVSNHGARQL-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~--v~~~~~a~~a~~aG~d~I~vs~~gg~~~-~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+..+|+..+--.++.. ..+.+++..+.+.|+|+|.++----+.. +..+..++.+..+.+.+ ++||++-||| +.+
T Consensus 100 ~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI-~~~ 176 (221)
T PRK06512 100 LAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGS-DLA 176 (221)
T ss_pred HHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCC-CHH
Confidence 4555555432234443 2467888889999999999864321111 12233456676676665 7999999999 789
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~ 314 (370)
++.+++..||++|.+-+.++.
T Consensus 177 n~~~~~~~GA~giAvisai~~ 197 (221)
T PRK06512 177 SAVEVAETGAEFVALERAVFD 197 (221)
T ss_pred HHHHHHHhCCCEEEEhHHhhC
Confidence 999999999999999999874
No 192
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.72 E-value=0.0034 Score=58.28 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=95.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|.....+.++++++.|++.+ |+|.= - ..| + .+-.
T Consensus 15 ~~d~~~l~~~~~~l~~~~~~~~--H~Dim-D--------g~f------------------------------v---pn~~ 50 (228)
T PTZ00170 15 AADFSKLADEAQDVLSGGADWL--HVDVM-D--------GHF------------------------------V---PNLS 50 (228)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEecc-c--------Ccc------------------------------C---CCcC
Confidence 4567778889999999998865 44410 0 001 0 0113
Q ss_pred ccHHHHHHHHHhc-CCcEEEEec-CCHHH-HHHHHHcCccEEEEccCCccC-----------------------------
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQ----------------------------- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v-~~~~~-a~~a~~aG~d~I~vs~~gg~~----------------------------- 259 (370)
+..+.++++|+.+ ++|+-+|.- .+++. ++.+.++|+|.|.+...++..
T Consensus 51 ~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 51 FGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVL 130 (228)
T ss_pred cCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHH
Confidence 4567888888887 788888875 55544 567888899988884322110
Q ss_pred ---C-----------------CC---ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 260 ---L-----------------DY---VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 260 ---~-----------------~~---~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~ 316 (370)
+ ++ .+..++-+.++++.. ..+.|.++|||+. +.+.++...|||.+.+||++..+
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~-~~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~a- 207 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRY-PHLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFKA- 207 (228)
T ss_pred HHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhc-ccCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhCC-
Confidence 0 00 011223334443332 2578999999987 68888889999999999996421
Q ss_pred HhcCHHHHHHHHHHHHHHHHH
Q 017492 317 AAEGEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 317 ~~~G~~~v~~~l~~l~~el~~ 337 (370)
+...+.++.+++.++.
T Consensus 208 -----~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 208 -----KDRKQAIELLRESVQK 223 (228)
T ss_pred -----CCHHHHHHHHHHHHHH
Confidence 1133455666655544
No 193
>PRK01362 putative translaldolase; Provisional
Probab=97.71 E-value=0.012 Score=53.98 Aligned_cols=100 Identities=23% Similarity=0.173 Sum_probs=76.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCCC
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRR 291 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~ 291 (370)
+.++.+.+. ++++-+=.+.+...+..+.++|+++|.. .-||--+.+...+..+.++.+.+. .+..|++ ..+|+
T Consensus 92 ~a~~~L~~~-Gi~v~~T~vfs~~Qa~~Aa~aGa~yisp--yvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-AS~r~ 167 (214)
T PRK01362 92 KAVKALSKE-GIKTNVTLIFSANQALLAAKAGATYVSP--FVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-ASVRH 167 (214)
T ss_pred HHHHHHHHC-CCceEEeeecCHHHHHHHHhcCCcEEEe--ecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-eecCC
Confidence 345555543 8899888899999999999999999876 335544556666777776666542 2455665 45999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
..++.++..+|||.+-+.-.++..+..
T Consensus 168 ~~~v~~~~~~G~d~iTi~~~vl~~l~~ 194 (214)
T PRK01362 168 PMHVLEAALAGADIATIPYKVIKQLFK 194 (214)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHHc
Confidence 999999999999999999988877654
No 194
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=97.70 E-value=0.00054 Score=65.00 Aligned_cols=86 Identities=23% Similarity=0.229 Sum_probs=66.7
Q ss_pred HHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
.++++|+..+ ...+--.+.+.++++.+.++|+|+|-+++- ..+.+.++.+.+..++|+.++||| +.++
T Consensus 167 av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~----------~~e~lk~~v~~~~~~ipi~AsGGI-~~~n 235 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM----------KPEEIKEAVQLLKGRVLLEASGGI-TLDN 235 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCCCcEEEECCC-CHHH
Confidence 4888888774 223334467899999999999999998663 225666666655446999999999 5799
Q ss_pred HHHHHHhCCCEEEEcHHH
Q 017492 295 VFKALALGASGIFIGRPV 312 (370)
Q Consensus 295 v~kalalGAd~V~igr~~ 312 (370)
+....+.|+|.+.+|...
T Consensus 236 i~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 236 LEEYAETGVDVISSGALT 253 (265)
T ss_pred HHHHHHcCCCEEEeCHHH
Confidence 999999999999997654
No 195
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.70 E-value=0.00079 Score=66.14 Aligned_cols=95 Identities=21% Similarity=0.235 Sum_probs=69.3
Q ss_pred HHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccC-C-CCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+...|+..+ ..++--.+-+.+++..|.+.|+|+|.++-...+. . +..+..++.+..+.+.. .+||++-|||. .+
T Consensus 230 ~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~-~~ 306 (347)
T PRK02615 230 LAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID-KS 306 (347)
T ss_pred HHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC-HH
Confidence 344455442 3343333467999999999999999987544332 1 12244567777777655 79999999995 79
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~ 314 (370)
++.+.+.+||++|.+++.++.
T Consensus 307 ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 307 NIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred HHHHHHHcCCcEEEEeHHHhC
Confidence 999999999999999999873
No 196
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.70 E-value=0.00017 Score=66.60 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=53.2
Q ss_pred HHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 240 RIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
..+.+.|+ ++.+..- -|+ ...+.++.+.++.+.. ++||+++|||++.+|+.++..+||++|.+|++++.+
T Consensus 148 ~~~~~~g~-~ii~tdI~~dGt---~~G~d~eli~~i~~~~--~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 148 DFLNSFDY-GLIVLDIHSVGT---MKGPNLELLTKTLELS--EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHhcCC-EEEEEECCcccc---CCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence 44456777 5555321 122 2235678888888876 799999999999999999888999999999998753
No 197
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.0024 Score=58.36 Aligned_cols=153 Identities=24% Similarity=0.334 Sum_probs=97.7
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|.....+.+++.+++|++.+ ++|. + ...|. | +-.
T Consensus 12 saD~~~l~~el~~~~~agad~i--H~DV--M-------DghFV-P--------------------------------NiT 47 (220)
T COG0036 12 SADFARLGEELKALEAAGADLI--HIDV--M-------DGHFV-P--------------------------------NIT 47 (220)
T ss_pred hCCHhHHHHHHHHHHHcCCCEE--EEec--c-------CCCcC-C--------------------------------Ccc
Confidence 4677788899999999999876 4441 0 00110 1 123
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccC---------------Cc---------cC------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GA---------RQ------ 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~---------------gg---------~~------ 259 (370)
|-...++++|+.++.|+-+=+ +.+++. .....++|+|.|.+.-. |- +.
T Consensus 48 fGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~ 127 (220)
T COG0036 48 FGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEP 127 (220)
T ss_pred cCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHH
Confidence 456689999998888888765 455654 67888999999998521 10 10
Q ss_pred ----CC-----------Cc----cchHHHHHHHHHHccC--CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 260 ----LD-----------YV----PATIMALEEVVKATQG--RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 260 ----~~-----------~~----~~~~~~l~~i~~~~~~--~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
.| +| +..++-+.++++.... ++-|-+||||.. +.+-++.++|||.+..||++ |.
T Consensus 128 ~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~~-~t~~~~~~AGad~~VaGSal-F~--- 202 (220)
T COG0036 128 VLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGINL-ETIKQLAAAGADVFVAGSAL-FG--- 202 (220)
T ss_pred HHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCcCH-HHHHHHHHcCCCEEEEEEEE-eC---
Confidence 01 22 2344555666555432 567999999976 77877778999999999944 42
Q ss_pred cCHHHHHHHHHHHHHHH
Q 017492 319 EGEKGVRRVLEMLREEF 335 (370)
Q Consensus 319 ~G~~~v~~~l~~l~~el 335 (370)
+.+ ....++.++.++
T Consensus 203 -~~d-~~~~i~~~~~~~ 217 (220)
T COG0036 203 -ADD-YKATIRELRGEL 217 (220)
T ss_pred -Ccc-HHHHHHHHHHHh
Confidence 222 334455555443
No 198
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.67 E-value=0.00036 Score=65.23 Aligned_cols=74 Identities=27% Similarity=0.239 Sum_probs=60.6
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|+|.+.+..--+. .+.....+.+.++.+.+ .+||.+.|||++.+|+.+++.+||+.|.+|+.++.
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~--~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~ 109 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKL--DVKVELSGGIRDDESLEAALATGCARVNIGTAALE 109 (241)
T ss_pred HHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHc--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC
Confidence 5678888899999987542221 13345678899998877 79999999999999999999999999999998764
No 199
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=97.64 E-value=0.0047 Score=57.12 Aligned_cols=137 Identities=23% Similarity=0.268 Sum_probs=88.1
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|...+.+.++++++.|++.+ |+|. + .|. ++ .+-.
T Consensus 12 ~ad~~~l~~~i~~l~~~g~d~l--HiDi--m--------DG~-----------------------------FV---PN~t 47 (223)
T PRK08745 12 SADFARLGEEVDNVLKAGADWV--HFDV--M--------DNH-----------------------------YV---PNLT 47 (223)
T ss_pred hcCHHHHHHHHHHHHHcCCCEE--EEec--c--------cCc-----------------------------cC---CCcc
Confidence 4577788889999999998875 4441 0 000 01 1223
Q ss_pred ccHHHHHHHHHh-cCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccC---------------Ccc---------C-----
Q 017492 212 LSWKDVKWLQTI-TKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GAR---------Q----- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~-~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~---------------gg~---------~----- 259 (370)
|..+.++++|+. ++.|+=+=+ +.+++. .....++|+|.|.+.-. |-+ .
T Consensus 48 fg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 48 IGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILD 127 (223)
T ss_pred cCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHH
Confidence 567788999887 578876654 345554 67788889998888421 100 0
Q ss_pred -----CC-----------Cc----cchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| +| +..++-+.++++... .++.|-+||||. .+.+.+..++|||.+.+||+++
T Consensus 128 ~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF 203 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIF 203 (223)
T ss_pred HHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhh
Confidence 01 11 223444555544432 247799999997 4788888899999999999854
No 200
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.64 E-value=0.00035 Score=67.37 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=63.1
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccC-CccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCC
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNH-GARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGA 303 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~-gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGA 303 (370)
++-++.=...++..++++.++|+-+|---.. =|+ ..|....+.+..+.+.. ++||+.++||.+++|+.+++++||
T Consensus 197 Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGs--g~gv~~p~~i~~~~e~~--~vpVivdAGIg~~sda~~AmelGa 272 (326)
T PRK11840 197 GFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGS--GLGIQNPYTIRLIVEGA--TVPVLVDAGVGTASDAAVAMELGC 272 (326)
T ss_pred CCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccC--CCCCCCHHHHHHHHHcC--CCcEEEeCCCCCHHHHHHHHHcCC
Confidence 3434333457899999999999955443111 011 12344667787777764 799999999999999999999999
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
|+|.+.+++..
T Consensus 273 dgVL~nSaIa~ 283 (326)
T PRK11840 273 DGVLMNTAIAE 283 (326)
T ss_pred CEEEEcceecc
Confidence 99999998753
No 201
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=97.63 E-value=0.017 Score=53.35 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCC
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 291 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~ 291 (370)
+.++.+.+. ++++-+=.+.+++.+..+.++|+++|... -||--|.|......+.++.+.+ ..+..|++.+ +|+
T Consensus 96 ~Ai~~L~~~-Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPy--vgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS-~r~ 171 (222)
T PRK12656 96 AAIKTLKAE-GYHITATAIYTVFQGLLAIEAGADYLAPY--YNRMENLNIDSNAVIGQLAEAIDRENSDSKILAAS-FKN 171 (222)
T ss_pred HHHHHHHHC-CCceEEeeeCCHHHHHHHHHCCCCEEecc--cchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEe-cCC
Confidence 345555543 78998888999999999999999998663 3443333433445555554443 3467777766 999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
..++.+++.+|||.+-+.-.++..+.
T Consensus 172 ~~~v~~a~~~G~d~vTvp~~vl~~l~ 197 (222)
T PRK12656 172 VAQVNKAFALGAQAVTAGPDVFEAAF 197 (222)
T ss_pred HHHHHHHHHcCCCEEecCHHHHHHHh
Confidence 99999999999999999998887764
No 202
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=97.63 E-value=0.0012 Score=59.45 Aligned_cols=135 Identities=26% Similarity=0.309 Sum_probs=83.0
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEcc---------C------------CccC-----------
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN---------H------------GARQ----------- 259 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~---------~------------gg~~----------- 259 (370)
+...|++|++.+.+||..|-. -..-+|+.+...|+|+|.=|- | |-+.
T Consensus 66 DP~mIKei~~aVsiPVMAk~RiGHFVEAQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EG 145 (296)
T KOG1606|consen 66 DPRMIKEIKNAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREG 145 (296)
T ss_pred CHHHHHHHHHhccchhhhhhhhhhhhHHHHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhc
Confidence 456899999999999998864 456788889999999987541 1 1110
Q ss_pred -------CCCcc------------------------------------chHHHHHHHHHHccCCCcE--EEecCCCCHHH
Q 017492 260 -------LDYVP------------------------------------ATIMALEEVVKATQGRIPV--FLDGGVRRGTD 294 (370)
Q Consensus 260 -------~~~~~------------------------------------~~~~~l~~i~~~~~~~ipv--i~~GGI~~~~d 294 (370)
.+.|. .+++.+.+..+ -+++|| ++.||+.++.|
T Consensus 146 AAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q--~GrlPVV~FAaGGvaTPAD 223 (296)
T KOG1606|consen 146 AAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQ--LGRLPVVNFAAGGVATPAD 223 (296)
T ss_pred hhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHH--cCCCceEEecccCcCChhH
Confidence 00000 11122222222 147787 79999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHHHH-----HhcCHHHHH-----HHHHHHHHHHHHHHHHcCCCChhh
Q 017492 295 VFKALALGASGIFIGRPVVYSL-----AAEGEKGVR-----RVLEMLREEFELAMALSGCRSLKE 349 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l~~~-----~~~G~~~v~-----~~l~~l~~el~~~m~~~G~~~l~~ 349 (370)
++-.+.+|+|+|.+|+.++.+- +..=.+.+. ..+-..-.+|-.+|.-...+++++
T Consensus 224 AALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAvthy~dp~~L~evS~~Lg~aM~g~~i~~~~~ 288 (296)
T KOG1606|consen 224 AALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAVTHYDDPAKLAEVSSGLGEAMVGISIQSIKE 288 (296)
T ss_pred HHHHHHcCCCeEEeccccccCCCHHHHHHHHHHHHHccCCHHHHHHHhccHHHHhhcccccchhh
Confidence 9999999999999999665320 000000111 123445566667776665555543
No 203
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.63 E-value=0.00054 Score=65.12 Aligned_cols=87 Identities=23% Similarity=0.232 Sum_probs=68.3
Q ss_pred HHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
.++.+|+..+ ...+.-.+.+.++++.+.++|+|+|.+++- ..+.+.++.+..+.++|+.++||| +.++
T Consensus 171 ~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~----------~~e~l~~~~~~~~~~ipi~AiGGI-~~~n 239 (268)
T cd01572 171 AVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM----------SPEELREAVALLKGRVLLEASGGI-TLEN 239 (268)
T ss_pred HHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc----------CHHHHHHHHHHcCCCCcEEEECCC-CHHH
Confidence 4788888774 223333457899999999999999999763 246677776655446999999999 5799
Q ss_pred HHHHHHhCCCEEEEcHHHH
Q 017492 295 VFKALALGASGIFIGRPVV 313 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l 313 (370)
+.++.+.|+|++.+|++..
T Consensus 240 i~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 240 IRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHcCCCEEEEEeeec
Confidence 9999999999999998654
No 204
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.61 E-value=0.00071 Score=62.94 Aligned_cols=99 Identities=19% Similarity=0.123 Sum_probs=70.4
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC---------------Cc-c---CCC-----------
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH---------------GA-R---QLD----------- 261 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~---------------gg-~---~~~----------- 261 (370)
..+.++++.+.+..|+.+.+ +.+.++++.+.+.|++.|+++.. |+ + .+|
T Consensus 61 n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~g 140 (232)
T PRK13586 61 NEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRG 140 (232)
T ss_pred hHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccC
Confidence 45778888885445998875 68899999999999999988531 11 0 001
Q ss_pred -------------------------------C--ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 262 -------------------------------Y--VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 262 -------------------------------~--~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
+ .-+.++.+..+.+. ..|++++|||++-+|+.++..+|+++|.+
T Consensus 141 w~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~~~---~~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 141 WKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVKDYARLI---RGLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHHHHHHhC---CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 0 01223334333322 34699999999999999999999999999
Q ss_pred cHHHHH
Q 017492 309 GRPVVY 314 (370)
Q Consensus 309 gr~~l~ 314 (370)
|++++.
T Consensus 218 g~Aly~ 223 (232)
T PRK13586 218 GMAFYL 223 (232)
T ss_pred ehhhhc
Confidence 999874
No 205
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=97.61 E-value=0.021 Score=52.73 Aligned_cols=171 Identities=15% Similarity=0.152 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHcCCceeecCCCC------CC----HHHHhccCC--CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017492 89 GEYATARAASAAGTIMTLSSWST------SS----VEEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~~------~~----~eei~~~~~--~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~it 156 (370)
.|+.-.+.+.+.|..-+++|.-+ .+ +.++.+..+ ++..+|++ ..|.+.+.+..++..+.+- .++|-
T Consensus 8 A~~~~i~~~~~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~~~~~v~~Qv~-~~d~e~mi~ea~~l~~~~~-ni~IK 85 (220)
T PRK12653 8 SDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLEVVLPQLHEAMGGQGRLFAQVM-ATTAEGMVNDARKLRSIIA-DIVVK 85 (220)
T ss_pred CCHHHHHHHHhCCCccEEeCCHHHHHhcCCCHHHHHHHHHHHhCCCCcEEEEEe-cCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 46777778888888777876522 22 334444443 46777886 4555554444444444332 23321
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc---HHHHHHHHHhcCCcEEEEec
Q 017492 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS---WKDVKWLQTITKLPILVKGV 233 (370)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~i~~ir~~~~~Pv~vK~v 233 (370)
+ | .+ .+.++.+++. ++++-+=.+
T Consensus 86 I------------------P-----------------------------------~T~~Gl~A~~~L~~~-GI~vn~T~v 111 (220)
T PRK12653 86 V------------------P-----------------------------------VTAEGLAAIKMLKAE-GIPTLGTAV 111 (220)
T ss_pred e------------------C-----------------------------------CCHHHHHHHHHHHHc-CCCeeEEEe
Confidence 1 1 12 3345555543 789888889
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
.+.+.|..+..+|+++|... -||--+.+...+..+.++.+.+ +.+..|++.+ +++..++.+++.+|+|.+-+.-
T Consensus 112 fs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS-~r~~~~v~~~~~~G~d~vTip~ 188 (220)
T PRK12653 112 YGAAQGLLSALAGAEYVAPY--VNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAAS-FKTPRQALDCLLAGCESITLPL 188 (220)
T ss_pred cCHHHHHHHHhcCCcEEEee--cChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHcCCCEEECCH
Confidence 99999999999999998763 3443333444445555554443 3356666655 9999999999999999999999
Q ss_pred HHHHHHHh
Q 017492 311 PVVYSLAA 318 (370)
Q Consensus 311 ~~l~~~~~ 318 (370)
.++..+..
T Consensus 189 ~vl~~l~~ 196 (220)
T PRK12653 189 DVAQQMIS 196 (220)
T ss_pred HHHHHHHc
Confidence 99887654
No 206
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=97.59 E-value=0.022 Score=52.55 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCCC
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVRR 291 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~~ 291 (370)
+.++.+.+. ++++-+=.+.+.+.|..+..+|+++|... -||--+.|......+.++.+.+ +.+..|++.+ +++
T Consensus 94 ~Ai~~L~~~-GI~vn~T~vfs~~Qa~~Aa~aGa~yIspy--vgR~~~~g~dg~~~i~~~~~~~~~~~~~tkILaAS-~r~ 169 (220)
T PRK12655 94 AAIKKLKKE-GIPTLGTAVYSAAQGLLAALAGAKYVAPY--VNRVDAQGGDGIRMVQELQTLLEMHAPESMVLAAS-FKT 169 (220)
T ss_pred HHHHHHHHC-CCceeEeEecCHHHHHHHHHcCCeEEEee--cchHhHcCCCHHHHHHHHHHHHHhcCCCcEEEEEe-cCC
Confidence 345555543 78988888999999999999999988763 3443233444455555555443 2356666655 999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHhcC--HHHHHHHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLAAEG--EKGVRRVLEML 331 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~~~G--~~~v~~~l~~l 331 (370)
..++.+++.+|||.+-+.-.++..+..+- .++++.+.+.|
T Consensus 170 ~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw 211 (220)
T PRK12655 170 PRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDW 211 (220)
T ss_pred HHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHH
Confidence 99999999999999999999888765432 24454444443
No 207
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=97.59 E-value=0.00089 Score=63.70 Aligned_cols=87 Identities=26% Similarity=0.260 Sum_probs=65.4
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccC--CCcEEEecCCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG--RIPVFLDGGVRR 291 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~--~ipvi~~GGI~~ 291 (370)
..++++|+..+ ...+.-.+.+.+++..+.++|+|+|.+.+-. .+.+.++.+.++. ++||.++|||.
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~----------~e~l~~~v~~i~~~~~i~i~asGGIt- 237 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMS----------PEELKEAVKLLKGLPRVLLEASGGIT- 237 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCC----------HHHHHHHHHHhccCCCeEEEEECCCC-
Confidence 35788888874 2233344678999999999999999997631 2444544444433 78999999995
Q ss_pred HHHHHHHHHhCCCEEEEcHHH
Q 017492 292 GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~ 312 (370)
.+++.++.+.|||++.+|+.+
T Consensus 238 ~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 238 LENIRAYAETGVDVISTGALT 258 (269)
T ss_pred HHHHHHHHHcCCCEEEEcHHH
Confidence 599999999999999998654
No 208
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.00057 Score=62.43 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=67.5
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCC-ccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHG-ARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~g-g~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
..+.+.+. +.-|..=...++-.++++.++||..|-=-+.. |+ .-|+-+.+.|.-|.+.. ++|||+|-||.++.|
T Consensus 122 Aae~Lv~e-GF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGS--g~G~~n~~~l~iiie~a--~VPviVDAGiG~pSd 196 (262)
T COG2022 122 AAEQLVKE-GFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGS--GLGLQNPYNLEIIIEEA--DVPVIVDAGIGTPSD 196 (262)
T ss_pred HHHHHHhC-CCEEeeccCCCHHHHHHHHhcCceEeccccccccC--CcCcCCHHHHHHHHHhC--CCCEEEeCCCCChhH
Confidence 33444332 33333333456778999999999988532110 11 12455677888888876 899999999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHH
Q 017492 295 VFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l~ 314 (370)
+..++++|+|+|++-+++-.
T Consensus 197 Aa~aMElG~DaVL~NTAiA~ 216 (262)
T COG2022 197 AAQAMELGADAVLLNTAIAR 216 (262)
T ss_pred HHHHHhcccceeehhhHhhc
Confidence 99999999999999998643
No 209
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.56 E-value=0.0015 Score=59.75 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=71.2
Q ss_pred HHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccCCccCC--CCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQL--DYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~gg~~~--~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+...++..+-..++.. +-+.+++..+.+.|+|+|.++.-..+.- +..+..++.+..+.+.. .+|+++-|||. .+
T Consensus 94 ~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~--~iP~vAIGGi~-~~ 170 (211)
T COG0352 94 LAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV--NIPVVAIGGIN-LE 170 (211)
T ss_pred hHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC--CCCEEEEcCCC-HH
Confidence 3445555544444444 3588999999999999999875444432 22344667888887765 69999999995 49
Q ss_pred HHHHHHHhCCCEEEEcHHHHH
Q 017492 294 DVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l~ 314 (370)
.+...+..||++|.+-|+++.
T Consensus 171 nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 171 NVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHHHHHhCCCeEEehhHhhc
Confidence 999999999999999999875
No 210
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=97.54 E-value=0.0027 Score=56.69 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhcCCcEEE--Eec---------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCC
Q 017492 213 SWKDVKWLQTITKLPILV--KGV---------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~v--K~v---------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 281 (370)
..++|+.+|+.+++|||- |-. .+.+++..+.++|+|.|-+........ .+..+.+.+|++. .
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~---~- 92 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP---ETLEELIREIKEK---Y- 92 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHC---T-
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHh---C-
Confidence 467899999999999862 321 467999999999999999987543211 2333456666653 2
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.++...|.+-+|...+..+|+|.|.--
T Consensus 93 -~l~MADist~ee~~~A~~~G~D~I~TT 119 (192)
T PF04131_consen 93 -QLVMADISTLEEAINAAELGFDIIGTT 119 (192)
T ss_dssp -SEEEEE-SSHHHHHHHHHTT-SEEE-T
T ss_pred -cEEeeecCCHHHHHHHHHcCCCEEEcc
Confidence 455556899999999999999998654
No 211
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.51 E-value=0.0089 Score=54.25 Aligned_cols=96 Identities=21% Similarity=0.195 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHH--HHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDA--RIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a--~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
.+.++.+++..+.+++... +.+..+. ..+...|+|++.+.+..+.. ..+.+..|+.+.++. .++|+++.||
T Consensus 85 ~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~----~~~PvilaGG 160 (203)
T cd00405 85 PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA----SRKPVILAGG 160 (203)
T ss_pred HHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc----cCCCEEEECC
Confidence 4567778877777776222 2333332 34556899999886532111 112345677777654 2789999999
Q ss_pred CCCHHHHHHHHHhC-CCEEEEcHHHHH
Q 017492 289 VRRGTDVFKALALG-ASGIFIGRPVVY 314 (370)
Q Consensus 289 I~~~~dv~kalalG-Ad~V~igr~~l~ 314 (370)
| +++++.+++..| +++|-+.|.+..
T Consensus 161 I-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 161 L-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred C-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 9 899999999999 999999998753
No 212
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.0031 Score=57.37 Aligned_cols=199 Identities=19% Similarity=0.221 Sum_probs=110.1
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCC---Ccchh-HHhhhhcCCCCccccccccccccCcccc-ccchh
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPR---LGRRE-ADIKNRFTLPPFLTLKNFQGLDLGKMDE-ANDSG 199 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~---~g~r~-~d~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~ 199 (370)
...|+-. |.-.+.+.++-+++.+-...+|.+++|. .|.+. +.+|..| |.++....+.-.+.+.... .....
T Consensus 4 p~LQvAL--D~~~l~~Ai~~a~~v~~~~diiEvGTpLik~eG~~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma~~a 79 (217)
T COG0269 4 PLLQVAL--DLLDLEEAIEIAEEVADYVDIIEVGTPLIKAEGMRAVRALRELF--PDKIIVADLKTADAGAIEARMAFEA 79 (217)
T ss_pred cceEeee--cccCHHHHHHHHHHhhhcceEEEeCcHHHHHhhHHHHHHHHHHC--CCCeEEeeeeecchhHHHHHHHHHc
Confidence 4567653 4444555666666654446677888886 23222 4455544 5554443322111000000 00000
Q ss_pred hHHHhhhcC-CCCccHHHHHHHHHhcCCcEEEEec--CCHHHH-HHHHHcCccEEEEccCCcc--CCCCccchHHHHHHH
Q 017492 200 LAAYVAGQI-DRSLSWKDVKWLQTITKLPILVKGV--LTAEDA-RIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEV 273 (370)
Q Consensus 200 ~~~~~~~~~-d~~~~~~~i~~ir~~~~~Pv~vK~v--~~~~~a-~~a~~aG~d~I~vs~~gg~--~~~~~~~~~~~l~~i 273 (370)
...++.-.. -+.-+.+..-+..+.+++-+.+=++ .++++. +.+.++|+|.+.+ |-|+ |..+-.++++.|.++
T Consensus 80 GAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D~q~~G~~~~~~~l~~i 157 (217)
T COG0269 80 GADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRDAQAAGKSWGEDDLEKI 157 (217)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--EecccHhhcCCCccHHHHHHH
Confidence 000100000 1112344333333345666666655 456665 4555599999999 6554 332333447788888
Q ss_pred HHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 274 VKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 274 ~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
++.......|-+.||| +++++-.+...|++.|.+||++- +...+.+..+.+++++.
T Consensus 158 k~~~~~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt------~a~dp~~~a~~~~~~i~ 213 (217)
T COG0269 158 KKLSDLGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAIT------GAKDPAEAARKFKEEID 213 (217)
T ss_pred HHhhccCceEEEecCC-CHHHHHHHhcCCCCEEEECchhc------CCCCHHHHHHHHHHHHh
Confidence 7766434789999999 56999999999999999999875 33344455566666664
No 213
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.48 E-value=0.0014 Score=62.58 Aligned_cols=88 Identities=25% Similarity=0.171 Sum_probs=67.9
Q ss_pred HHHHHHHHhcCCcEEE-EecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+|+..+-..++ =.+.+.++++.+.+.|+|+|.+.+ -..+.+.++++.+..++|+.+.||| +.+
T Consensus 176 ~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~----------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ 244 (277)
T PRK08072 176 KAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN----------RTPDEIREFVKLVPSAIVTEASGGI-TLE 244 (277)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC----------CCHHHHHHHHHhcCCCceEEEECCC-CHH
Confidence 4588888887532222 235789999999999999998854 2336677777665446888999999 779
Q ss_pred HHHHHHHhCCCEEEEcHHHH
Q 017492 294 DVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l 313 (370)
++.+..+.|+|.+.+|.+..
T Consensus 245 ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 245 NLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHcCCCEEEEChhhc
Confidence 99999999999999998754
No 214
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.46 E-value=0.0014 Score=61.87 Aligned_cols=87 Identities=23% Similarity=0.358 Sum_probs=61.2
Q ss_pred HHHHHHhcCCcEEEEec--------CCH---HH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 217 VKWLQTITKLPILVKGV--------LTA---ED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v--------~~~---~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.++...+++|+++... .+. .. ++.+.++|+|+|.++.. ...+.+.++.+.. ++||+
T Consensus 128 i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~---------~~~~~l~~~~~~~--~iPVv 196 (258)
T TIGR01949 128 IAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT---------GDIDSFRDVVKGC--PAPVV 196 (258)
T ss_pred HHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC---------CCHHHHHHHHHhC--CCcEE
Confidence 44444456889887432 122 22 46778999999998521 2456777777654 79999
Q ss_pred EecCCC--CHHHH----HHHHHhCCCEEEEcHHHHH
Q 017492 285 LDGGVR--RGTDV----FKALALGASGIFIGRPVVY 314 (370)
Q Consensus 285 ~~GGI~--~~~dv----~kalalGAd~V~igr~~l~ 314 (370)
+.|||+ +.+++ ..++.+||+++.+||.++.
T Consensus 197 a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 197 VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 999999 54444 4455899999999998874
No 215
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.45 E-value=0.0012 Score=60.44 Aligned_cols=100 Identities=32% Similarity=0.441 Sum_probs=72.8
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEcc---------C------------CccCC----------
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSN---------H------------GARQL---------- 260 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~---------~------------gg~~~---------- 260 (370)
+.+.|++|.+.+.+||..|-. -...+|+.+...|+|+|.=|- | |.|.+
T Consensus 65 Dp~~i~eim~aVsIPVMAKvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EG 144 (296)
T COG0214 65 DPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEG 144 (296)
T ss_pred CHHHHHHHHHhcccceeeeeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhh
Confidence 567899999999999999974 567889999999999998651 1 11110
Q ss_pred --------C--Cc----------------------------------cchHHHHHHHHHHccCCCcE--EEecCCCCHHH
Q 017492 261 --------D--YV----------------------------------PATIMALEEVVKATQGRIPV--FLDGGVRRGTD 294 (370)
Q Consensus 261 --------~--~~----------------------------------~~~~~~l~~i~~~~~~~ipv--i~~GGI~~~~d 294 (370)
. +| ..+++.+.++.+. +++|| ++.|||.|+.|
T Consensus 145 AaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~--grLPVvnFAAGGvATPAD 222 (296)
T COG0214 145 AAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKL--GRLPVVNFAAGGVATPAD 222 (296)
T ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHh--CCCCeEeecccCcCChhH
Confidence 0 00 0122333333332 46776 79999999999
Q ss_pred HHHHHHhCCCEEEEcHHHHH
Q 017492 295 VFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l~ 314 (370)
++-.+.+|||+|.+|+.++.
T Consensus 223 AALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 223 AALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHhCCCeEEecccccC
Confidence 99999999999999997654
No 216
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.43 E-value=0.0016 Score=62.13 Aligned_cols=87 Identities=23% Similarity=0.281 Sum_probs=66.1
Q ss_pred HHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc-----cCCCcEEEecC
Q 017492 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFLDGG 288 (370)
Q Consensus 215 ~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvi~~GG 288 (370)
+.++.+|+.. ..+| .=.+.+.+++..++++|+|.|.+.|- +.+.+.++++.+ +.++.+.++||
T Consensus 171 ~av~~~r~~~~~~kI-eVEv~~leea~~a~~agaDiI~LDn~----------~~e~l~~~v~~l~~~~~~~~~~leaSGG 239 (278)
T PRK08385 171 EAIRRAKEFSVYKVV-EVEVESLEDALKAAKAGADIIMLDNM----------TPEEIREVIEALKREGLRERVKIEVSGG 239 (278)
T ss_pred HHHHHHHHhCCCCcE-EEEeCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHHhcCcCCCEEEEEECC
Confidence 3577777765 3443 34468999999999999999999874 233444444432 24788999999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~l 313 (370)
| +.+.+.++..+|+|.+.+|++..
T Consensus 240 I-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 240 I-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred C-CHHHHHHHHHcCCCEEEeChhhc
Confidence 9 88999999999999999998764
No 217
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=97.40 E-value=0.02 Score=53.10 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=73.8
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccC----------------Ccc---------C-----
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH----------------GAR---------Q----- 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~----------------gg~---------~----- 259 (370)
|..+.++++|+.++.|+=+=+ +.+++. .....++|+|.|.+.-. |-+ .
T Consensus 46 fg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~ 125 (229)
T PRK09722 46 LSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIK 125 (229)
T ss_pred cCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 456678888887777766554 345554 67778889998887421 100 0
Q ss_pred -----CC-----------Cc----cchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 260 -----LD-----------YV----PATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 260 -----~~-----------~~----~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~ 316 (370)
.| +| +..++-+.++++... .++.|.+||||.. +.+.+..++|||.+.+||..+|+.
T Consensus 126 ~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~~i~~~~~aGad~~V~Gss~iF~~ 204 (229)
T PRK09722 126 YYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ-KTYEKLMEAGADVFIVGTSGLFNL 204 (229)
T ss_pred HHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEEChHHHcCC
Confidence 01 11 223334444444331 2577999999984 788888899999999998766631
Q ss_pred HhcCHHHHHHHHHHHHHHHH
Q 017492 317 AAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 317 ~~~G~~~v~~~l~~l~~el~ 336 (370)
.+...+.++.+++.++
T Consensus 205 ----~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 205 ----DEDIDEAWDIMTAQIE 220 (229)
T ss_pred ----CCCHHHHHHHHHHHHH
Confidence 1123345556655443
No 218
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.40 E-value=0.00091 Score=62.25 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.++.+.+.|++.+.+-...+. .......+..+.++.+.. .+|+++.|||++.+|+.+++.+||+.|.+|+..+
T Consensus 35 ~e~a~~~~~~G~~~l~i~dl~~~-~~~~~~~~~~i~~i~~~~--~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~ 109 (241)
T PRK13585 35 VEVAKRWVDAGAETLHLVDLDGA-FEGERKNAEAIEKIIEAV--GVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV 109 (241)
T ss_pred HHHHHHHHHcCCCEEEEEechhh-hcCCcccHHHHHHHHHHc--CCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence 36688888999999987543211 112245567888888766 7999999999999999999999999999999765
No 219
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=97.39 E-value=0.0019 Score=57.64 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccC--CCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQ--LDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~--~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+-+.++++.+.+.|+|++.+|--..+. .+..+..++.+.++.+.. ++||++-||| +.+++.+...+||++|.+-|
T Consensus 102 ~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~--~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~ 178 (180)
T PF02581_consen 102 CHSLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS--PIPVYALGGI-TPENIPELREAGADGVAVIS 178 (180)
T ss_dssp ESSHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT--SSCEEEESS---TTTHHHHHHTT-SEEEESH
T ss_pred cCcHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC--CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEe
Confidence 578899999999999999997533222 112344677888888776 7999999999 67999999999999999887
Q ss_pred H
Q 017492 311 P 311 (370)
Q Consensus 311 ~ 311 (370)
+
T Consensus 179 a 179 (180)
T PF02581_consen 179 A 179 (180)
T ss_dssp H
T ss_pred e
Confidence 6
No 220
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.0011 Score=60.62 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.|++..+.|+|-+++-.-.. +.++..+.++.+.++.+.+ -+|+.+.|||++.+|+.+.|.+|||-|.+.++.+.
T Consensus 33 VelA~~Y~e~GADElvFlDItA-s~~gr~~~~~vv~r~A~~v--fiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~ 108 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITA-SSEGRETMLDVVERVAEQV--FIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK 108 (256)
T ss_pred HHHHHHHHHcCCCeEEEEeccc-ccccchhHHHHHHHHHhhc--eeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence 4678999999999998632111 0112245667888888877 89999999999999999999999999999998764
No 221
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.38 E-value=0.0012 Score=61.18 Aligned_cols=75 Identities=25% Similarity=0.310 Sum_probs=59.7
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|++.|.+..-.+ .........+.+.++.+.. ++||+++|||++.+|+.+++..|++.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~i~i~dl~~-~~~~~~~n~~~~~~i~~~~--~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~ 108 (232)
T TIGR03572 34 NAARIYNAKGADELIVLDIDA-SKRGREPLFELISNLAEEC--FMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE 108 (232)
T ss_pred HHHHHHHHcCCCEEEEEeCCC-cccCCCCCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc
Confidence 457778889999988865322 1112345677888888876 79999999999999999999999999999998764
No 222
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.37 E-value=0.017 Score=57.73 Aligned_cols=93 Identities=20% Similarity=0.227 Sum_probs=61.1
Q ss_pred HHHHHHHhcCCcEEEEec--CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 216 DVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
.++.+++ .++-+++-.+ .++.+.......++|.|.+.. +.......+.+..+.++++. ..+++|.++|||. .+
T Consensus 268 ai~~akk-~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht--~vdp~~~~~~~~kI~~ikk~-~~~~~I~VdGGI~-~e 342 (391)
T PRK13307 268 AIHEAQK-TGIYSILDMLNVEDPVKLLESLKVKPDVVELHR--GIDEEGTEHAWGNIKEIKKA-GGKILVAVAGGVR-VE 342 (391)
T ss_pred HHHHHHH-cCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEcc--ccCCCcccchHHHHHHHHHh-CCCCcEEEECCcC-HH
Confidence 3455554 3555555322 344433333378999998842 11111224566677777665 3478999999998 78
Q ss_pred HHHHHHHhCCCEEEEcHHHH
Q 017492 294 DVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~l 313 (370)
++.+++.+|||.+.+||++.
T Consensus 343 ti~~l~~aGADivVVGsaIf 362 (391)
T PRK13307 343 NVEEALKAGADILVVGRAIT 362 (391)
T ss_pred HHHHHHHcCCCEEEEeHHHh
Confidence 89889999999999999854
No 223
>PRK08005 epimerase; Validated
Probab=97.36 E-value=0.012 Score=53.79 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=85.4
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
..|...+.+.+++.+++|++.+ |+|. + ...| +| +-.
T Consensus 9 ~ad~~~l~~el~~l~~~g~d~l--HiDv--M-------DG~F-VP--------------------------------N~t 44 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSL--HLDI--E-------DTSF-IN--------------------------------NIT 44 (210)
T ss_pred hCCHHHHHHHHHHHHHCCCCEE--EEec--c-------CCCc-CC--------------------------------ccc
Confidence 4567778889999999998865 4442 0 0001 01 113
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHH-HHHHHHcCccEEEEccC---------------Ccc---------C------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAED-ARIAVQAGAAGIIVSNH---------------GAR---------Q------ 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~-a~~a~~aG~d~I~vs~~---------------gg~---------~------ 259 (370)
+..+.++++|+.++.|+=+=+ +.+++. .....++|+|.|.+.-. |.. .
T Consensus 45 fG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~ 124 (210)
T PRK08005 45 FGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRY 124 (210)
T ss_pred cCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 456678888887777766654 345554 66778888888887421 110 0
Q ss_pred ----CC-----------Cc----cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ----LD-----------YV----PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ----~~-----------~~----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| +| +..++-+.++++.. ....|.+||||. .+.+.+..++|||.+.+||+++
T Consensus 125 ~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~-~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF 195 (210)
T PRK08005 125 LALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF-PAAECWADGGIT-LRAARLLAAAGAQHLVIGRALF 195 (210)
T ss_pred HHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhc-ccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhh
Confidence 01 11 22333444444433 235799999997 4788888899999999999854
No 224
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.35 E-value=0.0025 Score=58.86 Aligned_cols=75 Identities=31% Similarity=0.438 Sum_probs=59.9
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|++.+.+-.-.+. ..+.....+.+.++.+.+ .+|+.+.|||++.+|+.+++.+||+.|.+|+..+.
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~-~~g~~~~~~~i~~i~~~~--~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~ 106 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGA-KEGGPVNLPVIKKIVRET--GVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE 106 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCcc-ccCCCCcHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence 5578888999999998643221 113344677888888876 79999999999999999999999999999987654
No 225
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.35 E-value=0.0027 Score=59.58 Aligned_cols=100 Identities=20% Similarity=0.177 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccC-------------------Cc-c---C---C---C--
Q 017492 213 SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNH-------------------GA-R---Q---L---D-- 261 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~-------------------gg-~---~---~---~-- 261 (370)
..+.++++.+.+++||.+.+....++++.+.++|++.+++++. |. + . . +
T Consensus 64 n~~~i~~i~~~~~~~v~vGGGIr~e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~ 143 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQVGGGINDTNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGR 143 (253)
T ss_pred cHHHHHHHHHhCCCCEEEeCCcCHHHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCc
Confidence 5678899999889999998765559999999999999998640 11 0 0 0 0
Q ss_pred -----------CccchH------------------------------HHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 017492 262 -----------YVPATI------------------------------MALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (370)
Q Consensus 262 -----------~~~~~~------------------------------~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala 300 (370)
.+...+ +.+.++.+. .++||+++||+++.+|+.++-.
T Consensus 144 ~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dlel~~~l~~~--~~ipVIASGGv~s~eDi~~l~~ 221 (253)
T TIGR02129 144 WIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEELVSKLGEW--SPIPITYAGGAKSIDDLDLVDE 221 (253)
T ss_pred EEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHHHHHHHHhh--CCCCEEEECCCCCHHHHHHHHH
Confidence 011122 233333333 3799999999999999998755
Q ss_pred h--CCCEEEEcHHHHH
Q 017492 301 L--GASGIFIGRPVVY 314 (370)
Q Consensus 301 l--GAd~V~igr~~l~ 314 (370)
+ |...+.+|++++.
T Consensus 222 ~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 222 LSKGKVDLTIGSALDI 237 (253)
T ss_pred hcCCCCcEEeeehHHH
Confidence 5 6566888888653
No 226
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.34 E-value=0.0012 Score=68.54 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=38.6
Q ss_pred HHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH-hCCCEEEEcHHHHHH
Q 017492 267 IMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVYS 315 (370)
Q Consensus 267 ~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala-lGAd~V~igr~~l~~ 315 (370)
++.+..+.+.+ ++|||++||+.+.+|+.+++. .||+++..++-|.+.
T Consensus 471 ~~l~~~v~~~~--~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~ 518 (538)
T PLN02617 471 IELVKLVSDAV--TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRK 518 (538)
T ss_pred HHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccC
Confidence 34455555554 899999999999999999998 679999999988763
No 227
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.31 E-value=0.0011 Score=61.53 Aligned_cols=75 Identities=17% Similarity=0.270 Sum_probs=56.3
Q ss_pred CHH-HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 235 TAE-DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 235 ~~~-~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
++. .|+...+. ++.+.+..--|+ ..+.++.++.+.++.+.. .+||+++|||++.+|+.+++.+||+.|.+|++.+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga-~~g~~~n~~~i~~i~~~~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA-FEGKPKNLDVVKNIIRET--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch-hcCCcchHHHHHHHHhhC--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 443 45666666 887776432221 123346778888888775 7999999999999999999999999999999765
No 228
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.30 E-value=0.0014 Score=61.02 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=59.9
Q ss_pred CH-HHHHHHHH-cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 235 TA-EDARIAVQ-AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 235 ~~-~~a~~a~~-aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
++ +.|+...+ .|+|.+.+..-.+. ..+.+...+.+.++.+.+ .+||.+.||||+.+|+.+++.+||+-|.+|+..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a-~~~~~~n~~~I~~i~~~~--~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a 108 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGA-KAQHAREFDYIKSLRRLT--TKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKG 108 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccc-ccCCcchHHHHHHHHhhc--CCeEEEcCCcCCHHHHHHHHHCCCCEEEECchH
Confidence 44 55677777 69999988643221 123356778899998866 799999999999999999999999999999976
Q ss_pred H
Q 017492 313 V 313 (370)
Q Consensus 313 l 313 (370)
+
T Consensus 109 ~ 109 (234)
T PRK13587 109 I 109 (234)
T ss_pred h
Confidence 5
No 229
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.29 E-value=0.001 Score=62.44 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.|+.-.+.|++.+.|-.- +.+..+.+.++.+.+ .+||.+.||||+ +++.+++.+||+.|.+|+..+.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-------g~~n~~~i~~i~~~~--~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-------GPNNDDAAKEALHAY--PGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-------CCCcHHHHHHHHHhC--CCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence 57789999999999987543 334778899998876 799999999998 9999999999999999997653
No 230
>PRK08185 hypothetical protein; Provisional
Probab=97.28 E-value=0.094 Score=50.24 Aligned_cols=110 Identities=22% Similarity=0.297 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHc-CccEEEEcc---CCccCCCC-ccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEE
Q 017492 234 LTAEDARIAVQA-GAAGIIVSN---HGARQLDY-VPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 307 (370)
Q Consensus 234 ~~~~~a~~a~~a-G~d~I~vs~---~gg~~~~~-~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~ 307 (370)
.++++|....+. |+|.+.++. ||-+...+ ..-.++.|.+|++.+ ++|+++=||+..+ +++.|++.+|..=|-
T Consensus 149 t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 149 TDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKIN 226 (283)
T ss_pred CCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEE
Confidence 478889888876 999999864 44321111 112578899998877 8999999999665 556668899999999
Q ss_pred EcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 308 IGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 308 igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+++.+..+... .. ..-.....+.+.+..+..|+.+|..
T Consensus 227 i~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~~~gs~ 277 (283)
T PRK08185 227 ISSDMKYAFFKKVREILSDNPSLYEPNQIYPSAIEAAKEVVRHKMDLFNST 277 (283)
T ss_pred eChHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99977553211 00 1123334456677777788888754
No 231
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.27 E-value=0.0018 Score=60.18 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=52.2
Q ss_pred HcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCC-cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI-PVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 244 ~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i-pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
-.|...+.+-..++. +.+...+.+.++++.+ +. |+++.|||++.+++.+++..|||.|.+|+.+..
T Consensus 152 ~~g~~~vYle~gs~~---g~~~~~e~I~~v~~~~--~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~ 218 (232)
T PRK04169 152 YLGMPIVYLEYGGGA---GDPVPPEMVKAVKKAL--DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE 218 (232)
T ss_pred HcCCCeEEEECCCCC---CCCCCHHHHHHHHHhc--CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh
Confidence 346666666533322 3456678888888876 56 999999999999999999999999999999875
No 232
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=97.24 E-value=0.0077 Score=54.82 Aligned_cols=101 Identities=23% Similarity=0.273 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHH-HHHHHHHcCccEEEEcc---------------CCc---------cC------
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAE-DARIAVQAGAAGIIVSN---------------HGA---------RQ------ 259 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~-~a~~a~~aG~d~I~vs~---------------~gg---------~~------ 259 (370)
+..+.++++|+.+++|+=+=+ +.+++ -.+...++|+|.|.+.- +|. +.
T Consensus 44 ~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~ 123 (201)
T PF00834_consen 44 FGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEP 123 (201)
T ss_dssp B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTT
T ss_pred CCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHH
Confidence 456788999988888877765 34554 36778888888888741 111 00
Q ss_pred ----CC-----------Cc----cchHHHHHHHHHHc---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ----LD-----------YV----PATIMALEEVVKAT---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ----~~-----------~~----~~~~~~l~~i~~~~---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.| +| +..++-+.++++.. +.++.|.+||||+. +.+.+..++|||.+.+||.++
T Consensus 124 ~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~iF 198 (201)
T PF00834_consen 124 YLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAIF 198 (201)
T ss_dssp TGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHHH
T ss_pred HhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHHh
Confidence 11 12 22344444444433 24699999999987 678888889999999999764
No 233
>PRK12376 putative translaldolase; Provisional
Probab=97.24 E-value=0.098 Score=48.75 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHcCCceeecCCCC-------CCHH----HHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017492 89 GEYATARAASAAGTIMTLSSWST-------SSVE----EVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~~-------~~~e----ei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~it 156 (370)
.|+.-.+.+.+.|..-+++|.-+ ...+ ++.+..+ ++..+|++ ..+.+.+.+..++..+.+- .++|-
T Consensus 13 Ad~~eik~~~~~g~i~GVTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~mv~eA~~l~~~~~-nv~VK 90 (236)
T PRK12376 13 ADLEEMLAAYKNPLVKGFTTNPSLMRKAGVTDYKAFAKEVLAEIPDAPISFEVF-ADDLETMEKEAEKIASLGE-NVYVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEECCHHHHHhcCCCCHHHHHHHHHHhcCCCcEEEEEe-cCCHHHHHHHHHHHHHhCC-CeEEE
Confidence 57777888888888778876522 1333 3344444 46788885 4555554444444444432 23332
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH
Q 017492 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (370)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~ 236 (370)
+ |.. . .+..--.+.++.+.+. ++++-+=.+.++
T Consensus 91 I--P~T------------------~--------------------------~~G~~gl~Ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T PRK12376 91 I--PIT------------------N--------------------------TKGESTIPLIKKLSAD-GVKLNVTAIFTI 123 (236)
T ss_pred E--CCc------------------C--------------------------ccchhHHHHHHHHHHC-CCeEEEeeecCH
Confidence 1 110 0 0000124456666554 889988889999
Q ss_pred HHHHHHHHc----CccEEEEccCCccCCCCccchHHHHHHHHHHcc--CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIAVQA----GAAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a~~a----G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
..+..+.++ |+++|.. .-||-.|.+......+.++.+.+. .++.|++.+ ||+..++.+++.+|||.|-+.-
T Consensus 124 ~Qa~~a~~A~ag~ga~yisp--fvgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-iR~~~~v~~a~~~Gad~vTvp~ 200 (236)
T PRK12376 124 EQVKEVVDALTPGVPAIVSV--FAGRIADTGVDPVPLMKEALAICHSKPGVELLWAS-PREVYNIIQADQLGCDIITVTP 200 (236)
T ss_pred HHHHHHHHHhcCCCCeEEEE--ecchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHcCCCEEEcCH
Confidence 998755555 5888876 335544555555666666655442 356777766 9999999999999999999998
Q ss_pred HHHHHHH
Q 017492 311 PVVYSLA 317 (370)
Q Consensus 311 ~~l~~~~ 317 (370)
.++..+.
T Consensus 201 ~v~~~l~ 207 (236)
T PRK12376 201 DVLKKLP 207 (236)
T ss_pred HHHHHHH
Confidence 8887654
No 234
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.24 E-value=0.0025 Score=58.07 Aligned_cols=80 Identities=29% Similarity=0.321 Sum_probs=61.1
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.|+++++.+ ++.|....+++.++++.+.++|+++| ||-+ ...+.+..+.+ . ++|++- |+.|
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi-vsP~---------~~~~v~~~~~~-~--~i~~iP--G~~T 110 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI-VSPG---------LTPELAKHAQD-H--GIPIIP--GVAT 110 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE-ECCC---------CCHHHHHHHHH-c--CCcEEC--CCCC
Confidence 556799999887 47788888999999999999999999 4322 12233333332 2 677776 8999
Q ss_pred HHHHHHHHHhCCCEEE
Q 017492 292 GTDVFKALALGASGIF 307 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ 307 (370)
+.++.+|+.+||+.|=
T Consensus 111 ptEi~~A~~~Ga~~vK 126 (204)
T TIGR01182 111 PSEIMLALELGITALK 126 (204)
T ss_pred HHHHHHHHHCCCCEEE
Confidence 9999999999999874
No 235
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.22 E-value=0.01 Score=54.20 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=56.0
Q ss_pred HHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEccC--CccCCCCccchHHHHHHHHHHccC-C--CcEEEecCC
Q 017492 216 DVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQG-R--IPVFLDGGV 289 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~-~--ipvi~~GGI 289 (370)
.++.+++. ++.+++-.. .+..+..+....++|+|.+... |++.....+...+.+.++++.... + .+|.++|||
T Consensus 101 ~~~~~~~~-~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI 179 (220)
T PRK05581 101 LLQLIKSA-GIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI 179 (220)
T ss_pred HHHHHHHc-CCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 35555543 444443322 2333333334456898876542 222111222234455555554321 1 447799999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+. +++.+++..|+|.|.+||+++.
T Consensus 180 ~~-~nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 180 NA-DNIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CH-HHHHHHHHcCCCEEEEChhhhC
Confidence 98 8999988899999999999873
No 236
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.22 E-value=0.0044 Score=54.80 Aligned_cols=88 Identities=24% Similarity=0.273 Sum_probs=63.9
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHH---HccCCCcEEEecCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK---ATQGRIPVFLDGGVR 290 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~---~~~~~ipvi~~GGI~ 290 (370)
+.++.+++..+ .+-+.=.+.+.+++..++++|+|.|.+.|. .+ +.+.++.+ ....++.|.++|||.
T Consensus 68 ~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~-------~~---~~~~~~v~~l~~~~~~v~ie~SGGI~ 137 (169)
T PF01729_consen 68 EAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM-------SP---EDLKEAVEELRELNPRVKIEASGGIT 137 (169)
T ss_dssp HHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES--------CH---HHHHHHHHHHHHHTTTSEEEEESSSS
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc-------CH---HHHHHHHHHHhhcCCcEEEEEECCCC
Confidence 45788888763 332334578899999999999999999873 23 33444433 445679999999995
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l 313 (370)
- +.+.++...|+|.+.+|+...
T Consensus 138 ~-~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 138 L-ENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp T-TTHHHHHHTT-SEEEECHHHH
T ss_pred H-HHHHHHHhcCCCEEEcChhhc
Confidence 4 889899899999999998754
No 237
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.21 E-value=0.0044 Score=59.15 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=69.0
Q ss_pred HHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
+.++.+|+..+ .+|. -.+.+.+++..++++|+|.|.+.|- +.+.+.++.+.++.+.++.++|||. .
T Consensus 182 ~ai~~~r~~~~~~~kIe-VEv~tleea~ea~~~gaDiI~LDn~----------s~e~l~~av~~~~~~~~leaSGGI~-~ 249 (281)
T PRK06106 182 EAIRRARAGVGHLVKIE-VEVDTLDQLEEALELGVDAVLLDNM----------TPDTLREAVAIVAGRAITEASGRIT-P 249 (281)
T ss_pred HHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHhCCCceEEEECCCC-H
Confidence 46888888764 4443 3468999999999999999999873 3456666666666678999999994 5
Q ss_pred HHHHHHHHhCCCEEEEcHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l 313 (370)
+.+.++..+|+|.+.+|....
T Consensus 250 ~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 250 ETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred HHHHHHHhcCCCEEEeChhhc
Confidence 889888889999999998654
No 238
>PRK08227 autoinducer 2 aldolase; Validated
Probab=97.21 E-value=0.0068 Score=57.34 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCcEEEEec------CCHH-----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 216 DVKWLQTITKLPILVKGV------LTAE-----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v------~~~~-----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
.+.+-.+.|++|+++ .. .+.. -++.+.+.|+|.|.+.- +. +.+.++.+.. .+||+
T Consensus 131 ~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y----------~~-~~f~~vv~a~--~vPVv 196 (264)
T PRK08227 131 QLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY----------VE-EGFERITAGC--PVPIV 196 (264)
T ss_pred HHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEecCC----------CH-HHHHHHHHcC--CCcEE
Confidence 344455668999887 32 1211 26788999999998832 11 6777887765 79999
Q ss_pred EecCCCCH-HH----HHHHHHhCCCEEEEcHHHH
Q 017492 285 LDGGVRRG-TD----VFKALALGASGIFIGRPVV 313 (370)
Q Consensus 285 ~~GGI~~~-~d----v~kalalGAd~V~igr~~l 313 (370)
..||=... +| +..++..||.+|.+||-..
T Consensus 197 iaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIf 230 (264)
T PRK08227 197 IAGGKKLPERDALEMCYQAIDEGASGVDMGRNIF 230 (264)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCceeeechhhh
Confidence 99999853 33 3447778999999999654
No 239
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.21 E-value=0.053 Score=51.85 Aligned_cols=107 Identities=13% Similarity=0.215 Sum_probs=74.8
Q ss_pred CCHHHHHHH-HHcCccEEEEcc---CCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEE
Q 017492 234 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIF 307 (370)
Q Consensus 234 ~~~~~a~~a-~~aG~d~I~vs~---~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~ 307 (370)
.+++++... .+.|+|.+-++. ||-+ .+|. .++.|.+|.+.+ ++|+..-||=..+ +++.+++.+|..-|-
T Consensus 153 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y---~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 227 (283)
T PRK07998 153 TEPEKVKDFVERTGCDMLAVSIGNVHGLE---DIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVN 227 (283)
T ss_pred CCHHHHHHHHHHhCcCeeehhccccccCC---CCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEE
Confidence 467887664 479999999875 5543 2222 468899998887 8999999977666 677779999999999
Q ss_pred EcHHHHHHHHh--------c--C---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 308 IGRPVVYSLAA--------E--G---EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 308 igr~~l~~~~~--------~--G---~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+++.+..+... . . ..-.....+.+++..+..|+.+|..
T Consensus 228 i~Tel~~a~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 278 (283)
T PRK07998 228 IASDLRKAFITTVGKAYVNNHNEANLARVMAKAKQAVEEDVYSKIKMMNSN 278 (283)
T ss_pred ECHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99976543211 0 0 1123334456777788888888754
No 240
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.20 E-value=0.0039 Score=58.89 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=60.2
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|++.|.+..-.+. .....+..+.+.++.+.. .+||+++|||++.+|+.+++.+|++.|.+|+..+.
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~--~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~ 108 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASEC--FMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALE 108 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhC--CCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhc
Confidence 5578888999999998653221 112345778888888875 79999999999999999999999999999997653
No 241
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=97.20 E-value=0.017 Score=55.19 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=64.4
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 290 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~ 290 (370)
+.++.+|+..+ .+ +.=.+.+.++++.++++|+|.|.+.|- +.+.+.++.+.+ ..++.+-++|||
T Consensus 178 ~av~~~r~~~~~~k-IeVEv~tleqa~ea~~agaDiI~LDn~----------~~e~l~~av~~~~~~~~~~~leaSGGI- 245 (284)
T PRK06096 178 GAINQLRRHAPEKK-IVVEADTPKEAIAALRAQPDVLQLDKF----------SPQQATEIAQIAPSLAPHCTLSLAGGI- 245 (284)
T ss_pred HHHHHHHHhCCCCC-EEEECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhhccCCCeEEEEECCC-
Confidence 45888887764 34 344568999999999999999999773 223444444433 257889999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHH
Q 017492 291 RGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~ 311 (370)
+.+.+.++..+|+|.+.+|.+
T Consensus 246 ~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 246 NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred CHHHHHHHHhcCCCEEEECcc
Confidence 568898888899999999976
No 242
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=97.19 E-value=0.017 Score=55.13 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=64.2
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---cCCCcEEEecCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---QGRIPVFLDGGVR 290 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~~~ipvi~~GGI~ 290 (370)
+.++.+|+..+ .+|. =.+.+.++++.+.++|+|.|.+.|- +.+.+.++.+.+ ..++.+.++|||
T Consensus 177 ~av~~~r~~~~~~kIe-VEv~tleea~ea~~~GaDiI~lDn~----------~~e~l~~~v~~l~~~~~~~~leasGGI- 244 (277)
T TIGR01334 177 GAIGRLKQTAPERKIT-VEADTIEQALTVLQASPDILQLDKF----------TPQQLHHLHERLKFFDHIPTLAAAGGI- 244 (277)
T ss_pred HHHHHHHHhCCCCCEE-EECCCHHHHHHHHHcCcCEEEECCC----------CHHHHHHHHHHHhccCCCEEEEEECCC-
Confidence 45888888653 4433 3467999999999999999999763 223333333333 357889999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~ 312 (370)
+.+++.++..+|+|.+.+|.++
T Consensus 245 ~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 245 NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred CHHHHHHHHhcCCCEEEeCcce
Confidence 5689999989999999999874
No 243
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.19 E-value=0.0044 Score=59.30 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=68.2
Q ss_pred HHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 215 KDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
+.++.+|+..+ .+|. =.+.+.+++..+.++|+|.|.+.|- +.+.+.++.+.++.++.+.++||| +.
T Consensus 185 ~av~~~r~~~~~~~kIe-VEv~tleea~~a~~agaDiImLDnm----------spe~l~~av~~~~~~~~leaSGGI-~~ 252 (290)
T PRK06559 185 KAIAQARAYAPFVKMVE-VEVESLAAAEEAAAAGADIIMLDNM----------SLEQIEQAITLIAGRSRIECSGNI-DM 252 (290)
T ss_pred HHHHHHHHhCCCCCeEE-EECCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHHhcCceEEEEECCC-CH
Confidence 45888888764 3443 3468999999999999999999874 345566666655567899999999 45
Q ss_pred HHHHHHHHhCCCEEEEcHHHH
Q 017492 293 TDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 293 ~dv~kalalGAd~V~igr~~l 313 (370)
+.+.++..+|+|.+.+|.+..
T Consensus 253 ~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 253 TTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHhcCCCEEEeCcccc
Confidence 889888889999999998654
No 244
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.18 E-value=0.021 Score=54.11 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=63.6
Q ss_pred cHHHHHHHHHhcCCcEEEEecCC-HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGVLT-AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~~-~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.++|++|++.+++||+-+.-.. ..+++.+.++|+|.|.-+..- .|..+.+..++... ++|++ .+++|
T Consensus 53 ~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT~r~-------rP~~~~~~~iK~~~--~~l~M--AD~st 121 (283)
T cd04727 53 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVL-------TPADEEHHIDKHKF--KVPFV--CGARN 121 (283)
T ss_pred CHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEeccCCC-------CcHHHHHHHHHHHc--CCcEE--ccCCC
Confidence 67899999999999998765333 789999999999999532210 12334555555543 45554 57999
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 017492 292 GTDVFKALALGASGIFIG 309 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ig 309 (370)
-+++..+..+|||.|.--
T Consensus 122 leEal~a~~~Gad~I~TT 139 (283)
T cd04727 122 LGEALRRISEGAAMIRTK 139 (283)
T ss_pred HHHHHHHHHCCCCEEEec
Confidence 999999999999988543
No 245
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.18 E-value=0.063 Score=50.39 Aligned_cols=201 Identities=20% Similarity=0.229 Sum_probs=107.5
Q ss_pred ceeEcCeeecCceee-cccccccccCChhhHHHHHHHHHcCCceeecC-CCCCCHHHHhccCCCceEEEEeecCChHHHH
Q 017492 62 NTTVLGFKISMPIMI-APTAMQKMAHPEGEYATARAASAAGTIMTLSS-WSTSSVEEVASTGPGIRFFQLYVYKDRNVVA 139 (370)
Q Consensus 62 s~~l~g~~l~~Pi~i-apm~~~~~~~~~~e~~la~aa~~~G~~~~~s~-~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~ 139 (370)
-+.+-+.....+.+| .|.+.- ..+--..+|+.+++.|+.+.... +.+ +. .+.-|| +-..+-+.
T Consensus 5 ~~~~~~~~~~~~~~iaGPC~vE---s~e~~~~~a~~~~~~g~~~~r~g~~kp-------Rt--s~~sf~---G~G~~gl~ 69 (250)
T PRK13397 5 MSDFQNKTCSKNNFIVGPCSIE---SYDHIRLAASSAKKLGYNYFRGGAYKP-------RT--SAASFQ---GLGLQGIR 69 (250)
T ss_pred eEEecCccCCCCcEEeccCccC---CHHHHHHHHHHHHHcCCCEEEecccCC-------CC--CCcccC---CCCHHHHH
Confidence 333444444444444 454332 22233579999999999988743 211 11 234444 22345566
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHH
Q 017492 140 QLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKW 219 (370)
Q Consensus 140 ~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ 219 (370)
.+.+.+++.|...+- ++-.+ +.-+....+ .+-+. +.. ......+.+++
T Consensus 70 ~L~~~~~~~Gl~~~T-ev~d~----~~v~~~~e~--vdilq-----------------------Igs--~~~~n~~LL~~ 117 (250)
T PRK13397 70 YLHEVCQEFGLLSVS-EIMSE----RQLEEAYDY--LDVIQ-----------------------VGA--RNMQNFEFLKT 117 (250)
T ss_pred HHHHHHHHcCCCEEE-eeCCH----HHHHHHHhc--CCEEE-----------------------ECc--ccccCHHHHHH
Confidence 666667778876543 21111 111111111 00000 000 00114556777
Q ss_pred HHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCc---cchHHHHHHHHHHccCCCcEEEe----
Q 017492 220 LQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV---PATIMALEEVVKATQGRIPVFLD---- 286 (370)
Q Consensus 220 ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~---~~~~~~l~~i~~~~~~~ipvi~~---- 286 (370)
+.+ +++||++|.- .++++ ++.+.+.|..-|.+.-.|-+..... ...+..++.+++.. .+||+++
T Consensus 118 va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~--~lPVivd~SHs 194 (250)
T PRK13397 118 LSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKT--DLPIIVDVSHS 194 (250)
T ss_pred HHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHh--CCCeEECCCCC
Confidence 655 5999999965 56666 4555678887776653243222211 33455677776655 7899997
Q ss_pred cCCCC--HHHHHHHHHhCCCEEEEcHHH
Q 017492 287 GGVRR--GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 287 GGI~~--~~dv~kalalGAd~V~igr~~ 312 (370)
+|.|. ..-...|+++|||++++-+-+
T Consensus 195 ~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 195 TGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred CcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 44433 133556788999999998743
No 246
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.11 E-value=0.0027 Score=58.91 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=56.8
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|++.+.+..-.+. ..+.+...+.+.++.+.+ .+||.++||||+.+|+.+++.+||+.|.+|+..+.
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa-~~g~~~n~~~i~~i~~~~--~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAA-KEGRGSNLELIKEIAKET--GIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALE 107 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHH-CCTHHHHHHHHHHHHHHS--SSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEccCc-ccCchhHHHHHHHHHhcC--CccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhh
Confidence 5577777899999987532111 123355778888998876 69999999999999999999999999999998764
No 247
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.10 E-value=0.0026 Score=59.17 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.|+...+.|+|.+.+..-.+. .+.......+.++.+.+ .+|+.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 38 ~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~--~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 38 LDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAW--PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred HHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhC--CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence 35688888999999998653222 13456678888888876 6899999999999999999999999999999654
No 248
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.09 E-value=0.0058 Score=58.54 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=65.5
Q ss_pred HHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH---ccCCCcEEEecCCC
Q 017492 215 KDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGRIPVFLDGGVR 290 (370)
Q Consensus 215 ~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~ipvi~~GGI~ 290 (370)
+.++++|+..+ .|| .=.+.+.+++..++++|+|.|.+.|- +.+.+.++.+. ...++.+.++|||
T Consensus 188 ~ai~~~r~~~~~~kI-eVEv~tl~ea~eal~~gaDiI~LDnm----------~~e~vk~av~~~~~~~~~v~ieaSGGI- 255 (289)
T PRK07896 188 AALRAVRAAAPDLPC-EVEVDSLEQLDEVLAEGAELVLLDNF----------PVWQTQEAVQRRDARAPTVLLESSGGL- 255 (289)
T ss_pred HHHHHHHHhCCCCCE-EEEcCCHHHHHHHHHcCCCEEEeCCC----------CHHHHHHHHHHHhccCCCEEEEEECCC-
Confidence 45788887653 554 34568999999999999999999873 13334433332 2457889999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l 313 (370)
+.+.+.++..+|+|.+.+|.+..
T Consensus 256 ~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 256 TLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred CHHHHHHHHhcCCCEEEeChhhc
Confidence 55889888889999999998764
No 249
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=97.09 E-value=0.0048 Score=59.17 Aligned_cols=86 Identities=24% Similarity=0.264 Sum_probs=67.2
Q ss_pred HHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+|+.. ..|| .-.+-+.+++..++++|+|.|.+.|- +.+.+.++.+..+.++.+.++|||. .+
T Consensus 197 ~av~~~r~~~~~~kI-eVEv~sleea~ea~~~gaDiI~LDn~----------s~e~~~~av~~~~~~~~ieaSGGI~-~~ 264 (296)
T PRK09016 197 QAVEKAFWLHPDVPV-EVEVENLDELDQALKAGADIIMLDNF----------TTEQMREAVKRTNGRALLEVSGNVT-LE 264 (296)
T ss_pred HHHHHHHHhCCCCCE-EEEeCCHHHHHHHHHcCCCEEEeCCC----------ChHHHHHHHHhhcCCeEEEEECCCC-HH
Confidence 4577777765 3554 34568899999999999999999873 2356666666555688999999994 58
Q ss_pred HHHHHHHhCCCEEEEcHHH
Q 017492 294 DVFKALALGASGIFIGRPV 312 (370)
Q Consensus 294 dv~kalalGAd~V~igr~~ 312 (370)
.+.++-.+|+|.+.+|.+.
T Consensus 265 ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 265 TLREFAETGVDFISVGALT 283 (296)
T ss_pred HHHHHHhcCCCEEEeCccc
Confidence 8988888999999999864
No 250
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=97.08 E-value=0.028 Score=52.85 Aligned_cols=195 Identities=16% Similarity=0.178 Sum_probs=95.5
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceeecCCC---------CC------------CH---HHHhccCC-CceE
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWS---------TS------------SV---EEVASTGP-GIRF 126 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~---------~~------------~~---eei~~~~~-~~~~ 126 (370)
.||+.+..|.+ -.|+.+.+.|+.+.+.-.+ |. .+ +||....+ .|.+
T Consensus 15 ~pIig~gaGtG---------lsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPVi 85 (268)
T PF09370_consen 15 KPIIGAGAGTG---------LSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVI 85 (268)
T ss_dssp --EEEEEESSH---------HHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EE
T ss_pred CceEEEeeccc---------hhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEE
Confidence 47766554433 4899999999998873211 10 01 34444444 5788
Q ss_pred EEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhh
Q 017492 127 FQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAG 206 (370)
Q Consensus 127 ~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (370)
+-+....+...+...+++.++.||..+. | -|..|-=....|+. +..
T Consensus 86 aGv~atDP~~~~~~fl~~lk~~Gf~GV~-N--fPTvgliDG~fR~~-------------------------------LEe 131 (268)
T PF09370_consen 86 AGVCATDPFRDMDRFLDELKELGFSGVQ-N--FPTVGLIDGQFRQN-------------------------------LEE 131 (268)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHH-------------------------------HHH
T ss_pred EEecCcCCCCcHHHHHHHHHHhCCceEE-E--CCcceeeccHHHHH-------------------------------HHh
Confidence 8887655556778889999999998864 3 35432111111110 000
Q ss_pred cCCCCc--cHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc---CCcc-CCCCccc---hHHHHHHHHHH-
Q 017492 207 QIDRSL--SWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN---HGAR-QLDYVPA---TIMALEEVVKA- 276 (370)
Q Consensus 207 ~~d~~~--~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~---~gg~-~~~~~~~---~~~~l~~i~~~- 276 (370)
..-.| -.+.|+.-++. + =+.+--+.++++|+...++|+|.|++.- .||+ ..+...+ ..+.+.++.++
T Consensus 132 -~Gmgy~~EVemi~~A~~~-g-l~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa 208 (268)
T PF09370_consen 132 -TGMGYDREVEMIRKAHEK-G-LFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAA 208 (268)
T ss_dssp -TT--HHHHHHHHHHHHHT-T--EE--EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHH
T ss_pred -cCCCHHHHHHHHHHHHHC-C-CeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHH
Confidence 00011 22344444443 2 2333446799999999999999999842 1222 1112222 11233444443
Q ss_pred --ccCCCcEEE-ecCCCCHHHHHHHHHh--CCCEEEEcHHH
Q 017492 277 --TQGRIPVFL-DGGVRRGTDVFKALAL--GASGIFIGRPV 312 (370)
Q Consensus 277 --~~~~ipvi~-~GGI~~~~dv~kalal--GAd~V~igr~~ 312 (370)
+++++-+++ -|-|.+++|+...+.. |+++..-|+.+
T Consensus 209 ~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 209 RAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM 249 (268)
T ss_dssp HCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence 234544444 4568999999998883 57888777754
No 251
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.08 E-value=0.012 Score=55.70 Aligned_cols=86 Identities=19% Similarity=0.117 Sum_probs=63.9
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.++|++|++.+++||+-|.- ....+|+.+.++|+|.|.-|..- .|.-+.+..++..+ ++|++ .|+++
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~l-------rPade~~~~~K~~f--~vpfm--ad~~~ 123 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVL-------TPADWTFHIDKKKF--KVPFV--CGARD 123 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCCC-------CcHHHHHHHHHHHc--CCCEE--ccCCC
Confidence 678999999999999998864 34789999999999999643211 12333444444433 45554 57999
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 017492 292 GTDVFKALALGASGIFIG 309 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ig 309 (370)
-++++.++..|||.|.--
T Consensus 124 l~EAlrai~~GadmI~Tt 141 (287)
T TIGR00343 124 LGEALRRINEGAAMIRTK 141 (287)
T ss_pred HHHHHHHHHCCCCEEecc
Confidence 999999999999987543
No 252
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.04 E-value=0.0068 Score=57.82 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 214 WKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 214 ~~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.+.++.+|+..+ .+|. =.+.+.+++..++++|+|.|.+.|- +.+.+.++.+.++.+..+.++||| +
T Consensus 180 ~~av~~~r~~~~~~~kIe-VEv~slee~~ea~~~gaDiImLDn~----------s~e~l~~av~~~~~~~~leaSGgI-~ 247 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVE-VEVDRLDQIEPVLAAGVDTIMLDNF----------SLDDLREGVELVDGRAIVEASGNV-N 247 (281)
T ss_pred HHHHHHHHHhCCCCCcEE-EEeCCHHHHHHHHhcCCCEEEECCC----------CHHHHHHHHHHhCCCeEEEEECCC-C
Confidence 345888888764 3443 4478999999999999999999884 345566666655567789999999 4
Q ss_pred HHHHHHHHHhCCCEEEEcHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l 313 (370)
.+.+.++..+|+|.+.+|.+..
T Consensus 248 ~~ni~~yA~tGVD~Is~galth 269 (281)
T PRK06543 248 LNTVGAIASTGVDVISVGALTH 269 (281)
T ss_pred HHHHHHHHhcCCCEEEeCcccc
Confidence 5889888889999999998653
No 253
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.00 E-value=0.0074 Score=56.16 Aligned_cols=74 Identities=22% Similarity=0.173 Sum_probs=58.3
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.|+...+.|++.+.+-.-.+.. +.....+.+.++.+.. ..|+.+.||||+.+|+.+++.+||+-|.+|+..+.
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~--~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~ 107 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIG--FDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFT 107 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhC--CCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhC
Confidence 55788888999999986543321 3345667888887743 24999999999999999999999999999997653
No 254
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.00 E-value=0.0039 Score=57.39 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=54.3
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
|..+...|...|.+.. .|. ....+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 141 A~aae~~g~~ivyLe~-SG~-----~~~~e~I~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~ 209 (219)
T cd02812 141 ALAAEYLGMPIVYLEY-SGA-----YGPPEVVRAVKKVLG-DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE 209 (219)
T ss_pred HHHHHHcCCeEEEeCC-CCC-----cCCHHHHHHHHHhcC-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence 4566778888887862 222 245667777777642 68999999999999999999999999999998864
No 255
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.99 E-value=0.008 Score=57.61 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=65.5
Q ss_pred HHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 216 DVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 216 ~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
.++.+|+... .+|. =.+.+.++++.++++|+|.|.+.|- +.+.+.++.+.++.++.+-++||| +.+.
T Consensus 195 av~~~r~~~~~~kIe-VEvetleea~eA~~aGaDiImLDnm----------spe~l~~av~~~~~~~~lEaSGGI-t~~n 262 (294)
T PRK06978 195 ALDAAFALNAGVPVQ-IEVETLAQLETALAHGAQSVLLDNF----------TLDMMREAVRVTAGRAVLEVSGGV-NFDT 262 (294)
T ss_pred HHHHHHHhCCCCcEE-EEcCCHHHHHHHHHcCCCEEEECCC----------CHHHHHHHHHhhcCCeEEEEECCC-CHHH
Confidence 4666766542 3433 3468899999999999999999884 345566666555557889999999 4588
Q ss_pred HHHHHHhCCCEEEEcHHHH
Q 017492 295 VFKALALGASGIFIGRPVV 313 (370)
Q Consensus 295 v~kalalGAd~V~igr~~l 313 (370)
+.++..+|.|.+.+|....
T Consensus 263 i~~yA~tGVD~IS~galth 281 (294)
T PRK06978 263 VRAFAETGVDRISIGALTK 281 (294)
T ss_pred HHHHHhcCCCEEEeCcccc
Confidence 9888889999999998653
No 256
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.96 E-value=0.017 Score=52.87 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccC-CC--CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQ-LD--YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~-~~--~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+-+.+++..+.+.|+|+|.++--..+. .. ..+..++.+.++.+.. .++||++-|||. .+++.+.++.||++|.+-
T Consensus 109 ~H~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~-~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvi 186 (211)
T PRK03512 109 THDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL-ADYPTVAIGGIS-LERAPAVLATGVGSIAVV 186 (211)
T ss_pred CCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc-CCCCEEEECCCC-HHHHHHHHHcCCCEEEEh
Confidence 457788999999999999997433221 11 1233556677666542 269999999997 699999999999999999
Q ss_pred HHHHH
Q 017492 310 RPVVY 314 (370)
Q Consensus 310 r~~l~ 314 (370)
+.++.
T Consensus 187 sai~~ 191 (211)
T PRK03512 187 SAITQ 191 (211)
T ss_pred hHhhC
Confidence 99863
No 257
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=96.95 E-value=0.0046 Score=56.37 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=51.8
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+..+...|++.|.+-...|. ..+.+.+.+.++++.+ ++|++..||||+.+++.+++..|||.|.+|
T Consensus 140 a~aa~~~G~~~i~Le~~sGa---~~~v~~e~i~~Vk~~~--~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGA---SYPVNPETISLVKKAS--GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCC---CCCCCHHHHHHHHHhh--CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 45566789999988543232 2223467888888876 799999999999999999888999999987
No 258
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.94 E-value=0.012 Score=60.80 Aligned_cols=95 Identities=20% Similarity=0.229 Sum_probs=67.4
Q ss_pred HHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccCCccC-CC-CccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 217 VKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNHGARQ-LD-YVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~gg~~-~~-~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
....|+..+-..++.. +.+.+++..+.+.|+|+|.++--..+. .. ..+..++.+.++.+.. ++||++-|||. .+
T Consensus 380 ~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~aiGGI~-~~ 456 (502)
T PLN02898 380 VRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS--KLPVVAIGGIS-AS 456 (502)
T ss_pred HHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC--CCCEEEECCCC-HH
Confidence 3455555433333443 468899999999999999876322221 11 2223567777776654 79999999995 79
Q ss_pred HHHHHHHhCCC---EEEEcHHHHH
Q 017492 294 DVFKALALGAS---GIFIGRPVVY 314 (370)
Q Consensus 294 dv~kalalGAd---~V~igr~~l~ 314 (370)
++.+.+++||+ +|.+++.++.
T Consensus 457 ~~~~~~~~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 457 NAASVMESGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHHHHcCCCcCceEEEEeHHhc
Confidence 99999999999 9999999863
No 259
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.91 E-value=0.19 Score=47.99 Aligned_cols=109 Identities=25% Similarity=0.338 Sum_probs=73.5
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~i 308 (370)
.++++|+... +.|+|.+-++. ||.+......-.++.|.+|.+.+ ++|+..=||=..+ +++.+++..|..-|-+
T Consensus 148 T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 148 TDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred CCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 5688887765 57999999874 55432101123567899999988 7999998877666 5588899999999999
Q ss_pred cHHHHHHHHhc-------C------HHHHHHHHHHHHHHHHHHHHHcCC
Q 017492 309 GRPVVYSLAAE-------G------EKGVRRVLEMLREEFELAMALSGC 344 (370)
Q Consensus 309 gr~~l~~~~~~-------G------~~~v~~~l~~l~~el~~~m~~~G~ 344 (370)
++.+..+.... . ..-.....+.+.+.++..|..+|.
T Consensus 226 ~T~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~s 274 (276)
T cd00947 226 NTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGS 274 (276)
T ss_pred ChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99876542210 0 011233344566666666766664
No 260
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.89 E-value=0.0063 Score=56.09 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=51.2
Q ss_pred cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 245 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 245 aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.|...|.+-..||. +.+-+.+.+..+++.+. ++|++..||||+.+++.+++.+|||.|.+|+.+..
T Consensus 148 ~g~~~vYlE~gs~~---g~~v~~e~i~~v~~~~~-~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~ 213 (223)
T TIGR01768 148 LGMPIIYLEAGSGA---PEPVPPELVAEVKKVLD-KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE 213 (223)
T ss_pred cCCcEEEEEecCCC---CCCcCHHHHHHHHHHcC-CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence 57777776543333 23345677888877653 69999999999999999999999999999998764
No 261
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.88 E-value=0.15 Score=50.59 Aligned_cols=204 Identities=21% Similarity=0.234 Sum_probs=110.7
Q ss_pred ccceeEcCeeec--Cc-eeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChH
Q 017492 60 DMNTTVLGFKIS--MP-IMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (370)
Q Consensus 60 d~s~~l~g~~l~--~P-i~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~ 136 (370)
++.+.+.|..+. .| +++.|... -..+.-..+|+.+++.|+.+.....- . -+. .|..|| +-..+
T Consensus 104 ~~~~~~~~~~~g~~~~~~iaGpc~i---E~~~~~~~~A~~lk~~g~~~~r~~~~--k----pRt--sp~~f~---g~~~e 169 (360)
T PRK12595 104 DTIVDVKGEVIGDGNQSFIFGPCSV---ESYEQVEAVAKALKAKGLKLLRGGAF--K----PRT--SPYDFQ---GLGVE 169 (360)
T ss_pred CCEEEECCEEecCCCeeeEEecccc---cCHHHHHHHHHHHHHcCCcEEEcccc--C----CCC--CCcccc---CCCHH
Confidence 444444443332 34 45566332 22333457888999999887774221 0 001 234444 33456
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
....+-+.+++.|...+. ++ .. .+.-+....+ .+ -+. +.+ ..-..++.
T Consensus 170 ~l~~L~~~~~~~Gl~~~t-~v---~d-~~~~~~l~~~-vd-~lk-----------------------I~s--~~~~n~~L 217 (360)
T PRK12595 170 GLKILKQVADEYGLAVIS-EI---VN-PADVEVALDY-VD-VIQ-----------------------IGA--RNMQNFEL 217 (360)
T ss_pred HHHHHHHHHHHcCCCEEE-ee---CC-HHHHHHHHHh-CC-eEE-----------------------ECc--ccccCHHH
Confidence 666666677788877653 21 11 1111111111 01 000 000 00124566
Q ss_pred HHHHHHhcCCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCC---CccchHHHHHHHHHHccCCCcEEEec
Q 017492 217 VKWLQTITKLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLD---YVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~---~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
++++.+ ++.||++|.. .+.++. ....+.|.+-|++.-+|-+... .....+..++.+++.. .+||+.|.
T Consensus 218 L~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~--~~PV~~d~ 294 (360)
T PRK12595 218 LKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQET--HLPVMVDV 294 (360)
T ss_pred HHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHh--CCCEEEeC
Confidence 777765 6899999975 477774 3445678877776543533222 1123566788777755 68999964
Q ss_pred CCCCH----H--HHHHHHHhCCCEEEEcHHH
Q 017492 288 GVRRG----T--DVFKALALGASGIFIGRPV 312 (370)
Q Consensus 288 GI~~~----~--dv~kalalGAd~V~igr~~ 312 (370)
.=..| . -...|+++|||++++-+-+
T Consensus 295 ~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 295 THSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 43232 2 3445788999999998866
No 262
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.88 E-value=0.32 Score=46.66 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=75.4
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.++++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|
T Consensus 156 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~Ki 230 (285)
T PRK07709 156 ADPAECKHLVEATGIDCLAPALGSVHGPY---KGEPNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKI 230 (285)
T ss_pred CCHHHHHHHHHHhCCCEEEEeecccccCc---CCCCccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 5788887655 58999999874 4533 2333 567899998887 7999998876666 77888999999999
Q ss_pred EEcHHHHHHHHhc--------C-----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAAE--------G-----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~~--------G-----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+-.+.... . ..-.....+.+++.++..|+.+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~ 282 (285)
T PRK07709 231 NVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSN 282 (285)
T ss_pred EeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999765432110 0 1223344556777778888888754
No 263
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=96.87 E-value=0.31 Score=46.79 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~-~~dv~kalalGAd~V~i 308 (370)
.++++|+... +.|+|.+-++. ||-+.. ...-.++.|.+|.+.+ ++|+..=||=.. .+++.|++.+|..-|-+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~-~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 155 TDPQEAKRFVELTGVDSLAVAIGTAHGLYSK-TPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CCHHHHHHHHHHhCCCEEEeccCcccCCCCC-CCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEe
Confidence 4688887655 57999999874 554421 1122567899999987 799888774333 47778899999999999
Q ss_pred cHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 309 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 309 gr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
++.+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (286)
T PRK12738 232 ATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSA 281 (286)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977554221 00 1123334456677777777777754
No 264
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.83 E-value=0.008 Score=55.62 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=44.7
Q ss_pred HcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 244 ~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
=.|...|.+-...|+ .++.+ ..+.++++.+ .++|+|..||||+.+++.+++..|||.|.+|..+..
T Consensus 151 ~~g~~~iYLEaGSGa---~~~v~-~~v~~~~~~~-~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGA---YGPVP-EEVIAAVKKL-SDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HTT-SEEEEE--TTS---SS-HH-HHHHHHHHHS-SSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HhCCCEEEEEeCCCC---CCCcc-HHHHHHHHhc-CCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 367888887542222 22222 3444455544 489999999999999999999999999999999865
No 265
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=96.81 E-value=0.44 Score=44.44 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHcCCceeecCCCC-------CCHHHHh----ccC-CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEe
Q 017492 89 GEYATARAASAAGTIMTLSSWST-------SSVEEVA----STG-PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALT 156 (370)
Q Consensus 89 ~e~~la~aa~~~G~~~~~s~~~~-------~~~eei~----~~~-~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~it 156 (370)
.|+.-.+.+.+.|..-+++|..+ ...+++. +.. +++..+|++ ..|.+.+.+..++..+.+ ..++|-
T Consensus 13 Ad~~ei~~~~~~g~i~GvTTNPsll~k~g~~~~~~~~~~i~~~~~~~~vs~EV~-~~d~~~m~~eA~~l~~~~-~nv~VK 90 (236)
T TIGR02134 13 ANLEEMVKFSTHPYVKGFTTNPSLMRKAGIVDYEAFAHEALAQITDLPISFEVF-ADDLDEMEKEARYIASWG-NNVNVK 90 (236)
T ss_pred CCHHHHHHHHhCCCeeEEeCCHHHHHhcCCCCHHHHHHHHHHHccCCcEEEEEe-cCCHHHHHHHHHHHHhcC-CCeEEE
Confidence 46777888888888778876522 1233332 222 357888986 455555555555554454 233332
Q ss_pred cCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEecCCH
Q 017492 157 VDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKGVLTA 236 (370)
Q Consensus 157 vd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~~ 236 (370)
+ |.. .. ......+.++.+++. ++++-+=.+.++
T Consensus 91 I--P~T------------------~~--------------------------~G~~~l~ai~~L~~~-GI~vn~T~vfs~ 123 (236)
T TIGR02134 91 I--PVT------------------NT--------------------------KGESTGPLIQKLSAD-GITLNVTALTTI 123 (236)
T ss_pred E--CCc------------------Cc--------------------------ccchHHHHHHHHHHC-CCcEEeehcCCH
Confidence 2 110 00 001135567777665 788888889999
Q ss_pred HHHHHH---HHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHcc--CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIA---VQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a---~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~--~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
..+..+ ..+| +++|... -||--|.|......+.++.+.+. .+..|++.+ +|+..++.++..+|||.+-+.-
T Consensus 124 ~Qa~~aa~A~~aG~a~yispf--vgR~dd~g~D~~~~i~~i~~i~~~~~~tkILaAS-~R~~~~v~~a~~~Gad~vTvp~ 200 (236)
T TIGR02134 124 EQVEKVCQSFTDGVPGIVSVF--AGRIADTGVDPEPHMREALEIVAQKPGVELLWAS-PRELFNIIQADRIGCDIITCAH 200 (236)
T ss_pred HHHHHHHHHHhCCCCeEEEEe--cchhhhcCCCcHHHHHHHHHHHHhCCCcEEEEEc-cCCHHHHHHHHHcCCCEEECCH
Confidence 888764 4589 6888763 35544555555556665555442 367888877 9999999999999999999998
Q ss_pred HHHHHHH
Q 017492 311 PVVYSLA 317 (370)
Q Consensus 311 ~~l~~~~ 317 (370)
.++..+.
T Consensus 201 ~v~~~l~ 207 (236)
T TIGR02134 201 DILAKLP 207 (236)
T ss_pred HHHHHHH
Confidence 8887664
No 266
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=96.80 E-value=0.24 Score=47.55 Aligned_cols=108 Identities=25% Similarity=0.326 Sum_probs=76.3
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCcc--chHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP--ATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.++++|+... +.|+|.+-++. ||.+. ..| -.++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..-|
T Consensus 158 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~--~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 233 (288)
T TIGR00167 158 TDPEEAKEFVKLTGVDSLAAAIGNVHGVYK--GEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKV 233 (288)
T ss_pred CCHHHHHHHHhccCCcEEeeccCccccccC--CCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887766 57999999874 55432 123 3678899999988 8999999977766 57888999999999
Q ss_pred EEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+..+... .. ..-.....+.+++.++..|..+|..
T Consensus 234 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 285 (288)
T TIGR00167 234 NIDTELQIAFAAAVRNYYAENKDYYDPRVWLRPGEKAMKEVVLEKIKLFGSA 285 (288)
T ss_pred EcChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999987543211 00 1223344566777777788887754
No 267
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.80 E-value=0.32 Score=46.67 Aligned_cols=109 Identities=18% Similarity=0.275 Sum_probs=72.4
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC-HHHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR-GTDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~-~~dv~kalalGAd~V~i 308 (370)
.++++|+.-. +.|+|.+-|+. ||-+.. ...-.++.|.+|.+.+ ++|+..=||=.. -+++.|++.+|..-|-+
T Consensus 155 T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~-~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 155 TDPAQAREFVEATGIDSLAVAIGTAHGMYKG-EPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CCHHHHHHHHHHHCcCEEeeccCccccccCC-CCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 5788887655 58999999874 554421 1123567899999887 789887774333 36788899999999999
Q ss_pred cHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 309 GRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 309 gr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
++.+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 232 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK09195 232 ATELKIAFSQALKNYLTEHPEANDPRHYLQPAKSAMKDVVSKVIADCGCE 281 (284)
T ss_pred CcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977543210 00 1113334456677777777777753
No 268
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.79 E-value=0.023 Score=57.25 Aligned_cols=96 Identities=16% Similarity=0.096 Sum_probs=67.1
Q ss_pred HHHHHhcCCcEEEEec-CCHHHHHHHHHcCccEEEEccCCccC-C--CCccchHHHHHHHHHHcc-------CCCcEEEe
Q 017492 218 KWLQTITKLPILVKGV-LTAEDARIAVQAGAAGIIVSNHGARQ-L--DYVPATIMALEEVVKATQ-------GRIPVFLD 286 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-~~~~~a~~a~~aG~d~I~vs~~gg~~-~--~~~~~~~~~l~~i~~~~~-------~~ipvi~~ 286 (370)
..+|+..+--.++..+ -+.+++.++.+.|+|+|.++----+. . ...+-.++.+.++++.+. ..+||++-
T Consensus 291 ~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI 370 (437)
T PRK12290 291 ANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI 370 (437)
T ss_pred hhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE
Confidence 3444444322344443 57899999999999999986422221 1 223345667766665542 26999999
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 287 GGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
||| +.+++...++.||++|.+=|+++.
T Consensus 371 GGI-~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 371 GGI-DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEehHhhc
Confidence 999 779999999999999999999874
No 269
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.77 E-value=0.013 Score=55.21 Aligned_cols=71 Identities=27% Similarity=0.219 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+.|+.-.+.|++.+.|-.-+| +.+...+.+.+|++ + .+||-+.||||+ +++.+++.+||+-|.+|+..+.
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdg----g~~~n~~~i~~i~~-~--~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGA----DDASLAAALEALRA-Y--PGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCC----CCcccHHHHHHHHh-C--CCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 4668889999999998754332 22445778888887 5 699999999997 9999999999999999997664
No 270
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.77 E-value=0.0083 Score=56.16 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=58.6
Q ss_pred CH-HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 235 TA-EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 235 ~~-~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+| +.|+...+.|+|.+.+..--+. ..+.+...+.+.++.+.+ .||.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a-~~g~~~n~~~i~~i~~~~---~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~ 106 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKA-IENSVENLPVLEKLSEFA---EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL 106 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-ccCCcchHHHHHHHHhhc---CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence 44 5578888999999987542221 123355678888888764 599999999999999999999999999999654
No 271
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.76 E-value=0.011 Score=54.23 Aligned_cols=81 Identities=26% Similarity=0.222 Sum_probs=60.7
Q ss_pred cHHHHHHHHHhcC----CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 213 SWKDVKWLQTITK----LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 213 ~~~~i~~ir~~~~----~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
..+.|+.+++.++ +-|.+..+++.++++.+.++|+++|+- -+ ...+.+..+. .. ++|++- |
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs-P~---------~~~~v~~~~~-~~--~i~~iP--G 115 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS-PS---------FNRETAKICN-LY--QIPYLP--G 115 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHHH-Hc--CCCEEC--C
Confidence 5567999998873 556777789999999999999999953 21 1122333322 22 566665 8
Q ss_pred CCCHHHHHHHHHhCCCEEEE
Q 017492 289 VRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~i 308 (370)
..|+.++..++.+|||.|.+
T Consensus 116 ~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 116 CMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999998
No 272
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.72 E-value=0.014 Score=66.16 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=89.0
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvi~-~GGI~~~~dv~kalalGAd~V~igr 310 (370)
++|..+++.|+..|++|..+-.......|.+-++..+..++ +.++.||+ +|.+|+.-|++..+.+||++|.-.-
T Consensus 601 ~~A~~Av~~G~~ilILSDr~~~~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA~AV~PYL 680 (1485)
T PRK11750 601 DEAEQAVRDGTVLLVLSDRNIAKGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGATAVYPYL 680 (1485)
T ss_pred HHHHHHHHCCCeEEEEcCCCCCCCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcChhhhhhHH
Confidence 34778889999999999865322223445555555555544 45788888 8999999999999999999995544
Q ss_pred HHH--HHHHhcC------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 311 PVV--YSLAAEG------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 311 ~~l--~~~~~~G------~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
++- ..+...| .+.+.++++.+.++|...|..+|.+++..-++..+.-
T Consensus 681 A~eti~~l~~~g~l~~~~~~a~~ny~~A~~kGLlKImsKMGIStl~SY~gaqiFE 735 (1485)
T PRK11750 681 AYETLGDLVDTGEILKDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLFE 735 (1485)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhcchhhHHhcCCccccc
Confidence 431 1111223 3668899999999999999999999999888776553
No 273
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.71 E-value=0.016 Score=52.12 Aligned_cols=81 Identities=27% Similarity=0.323 Sum_probs=61.2
Q ss_pred cHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.++.+++.++ +++....+.+.+.++.+.++|+|+|...+ . .. .+.+.++.. .++++. |+.|
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~---~-------~~-~~~~~~~~~--~~~~i~--gv~t 106 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG---L-------DP-EVVKAANRA--GIPLLP--GVAT 106 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC---C-------CH-HHHHHHHHc--CCcEEC--CcCC
Confidence 4557999999875 66777778899999999999999995421 1 11 233333333 567765 8889
Q ss_pred HHHHHHHHHhCCCEEEE
Q 017492 292 GTDVFKALALGASGIFI 308 (370)
Q Consensus 292 ~~dv~kalalGAd~V~i 308 (370)
.+++.+++.+|||.+.+
T Consensus 107 ~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 107 PTEIMQALELGADIVKL 123 (190)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999998
No 274
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=96.71 E-value=0.034 Score=50.51 Aligned_cols=125 Identities=19% Similarity=0.294 Sum_probs=77.9
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
|...+.+.+.+.++.+++.|++.+++.+-. .|
T Consensus 66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~------------------------------------------------~d 97 (201)
T PF03932_consen 66 YSDEEIEIMKEDIRMLRELGADGFVFGALT------------------------------------------------ED 97 (201)
T ss_dssp --HHHHHHHHHHHHHHHHTT-SEEEE--BE------------------------------------------------TT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeeEEEeEC------------------------------------------------CC
Confidence 555556777888888899999998864210 13
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.+.++++.+.. +.|+.+=-. .+++. .+.+.+.|++.|-.|+.-. .....++.|.++.+...+++.|
T Consensus 98 g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~----~a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 98 GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAP----TALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSS----STTTCHHHHHHHHHHHTTSSEE
T ss_pred CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCC----CHHHHHHHHHHHHHHcCCCcEE
Confidence 345666777777765 678776543 34444 4678899999998764321 2233456677776666678999
Q ss_pred EEecCCCCHHHHHHHHH-hCCCEEE
Q 017492 284 FLDGGVRRGTDVFKALA-LGASGIF 307 (370)
Q Consensus 284 i~~GGI~~~~dv~kala-lGAd~V~ 307 (370)
++.|||+. +.+.+.++ .|+..+=
T Consensus 174 m~GgGv~~-~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 174 MPGGGVRA-ENVPELVEETGVREIH 197 (201)
T ss_dssp EEESS--T-TTHHHHHHHHT-SEEE
T ss_pred EecCCCCH-HHHHHHHHhhCCeEEe
Confidence 99999977 67777777 8887653
No 275
>PRK06852 aldolase; Validated
Probab=96.71 E-value=0.035 Score=53.57 Aligned_cols=92 Identities=22% Similarity=0.197 Sum_probs=59.6
Q ss_pred HHHHHHhcCCcEEEEec------C---CH----HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 217 VKWLQTITKLPILVKGV------L---TA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v------~---~~----~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
+.+-.+.|++|+++-.. . .+ .-++.+.+.|||.|.+--.+ +.+....+.+.++.+.+ +.+||
T Consensus 159 v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~----~~~~g~~e~f~~vv~~~-g~vpV 233 (304)
T PRK06852 159 IIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPK----KEGANPAELFKEAVLAA-GRTKV 233 (304)
T ss_pred HHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCC----cCCCCCHHHHHHHHHhC-CCCcE
Confidence 33344557999886321 1 11 22678899999999985321 00012346677777654 37999
Q ss_pred EEecCCCCH-HHHH----HHHH-hCCCEEEEcHHHH
Q 017492 284 FLDGGVRRG-TDVF----KALA-LGASGIFIGRPVV 313 (370)
Q Consensus 284 i~~GGI~~~-~dv~----kala-lGAd~V~igr~~l 313 (370)
++.||=... .|++ .++. .||.+|.+||-..
T Consensus 234 viaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIf 269 (304)
T PRK06852 234 VCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIH 269 (304)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhh
Confidence 999998853 3344 4666 7999999999654
No 276
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=96.67 E-value=0.54 Score=45.54 Aligned_cols=109 Identities=19% Similarity=0.193 Sum_probs=75.3
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCHH--------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-------------- 293 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~~-------------- 293 (370)
.++++|..-. +.|+|.+-++- ||-+... +.| .++.|.+|.+.+ ++|+..=||=..++
T Consensus 155 TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~-~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e~~~~~~~~g~~~~ 231 (307)
T PRK05835 155 VNPKEAEQFVKESQVDYLAPAIGTSHGAFKFK-GEPKLDFERLQEVKRLT--NIPLVLHGASAIPDDVRKSYLDAGGDLK 231 (307)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCccccccCCC-CCCccCHHHHHHHHHHh--CCCEEEeCCCCCchHHhhhhhhhccccc
Confidence 4688887655 57999999874 5543211 333 567899999887 89999988766666
Q ss_pred --------HHHHHHHhCCCEEEEcHHHHHHHHhc--------C-----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 294 --------DVFKALALGASGIFIGRPVVYSLAAE--------G-----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 294 --------dv~kalalGAd~V~igr~~l~~~~~~--------G-----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
++.|++.+|..-|-+++.+..+.... . ..-.....+.+++.++..|..+|..
T Consensus 232 ~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 304 (307)
T PRK05835 232 GSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSA 304 (307)
T ss_pred cccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 79999999999999999775542210 0 1123334456667777777777754
No 277
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=96.66 E-value=0.42 Score=45.77 Aligned_cols=109 Identities=16% Similarity=0.252 Sum_probs=73.4
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V~i 308 (370)
.++++|+... +.|+|.+-++- ||-+.. ...-.++.|.+|++.+ ++|+..=||=..+ +++.+++.+|..-|-+
T Consensus 153 T~peea~~Fv~~TgvD~LAvaiGt~HG~yk~-~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 153 TDPQEAKEFVEATGVDSLAVAIGTAHGLYKK-TPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CCHHHHHHHHHHHCcCEEecccCccccCcCC-CCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 4678876654 69999999874 554321 1123567899999887 7898887755443 6677799999999999
Q ss_pred cHHHHHHHHh--------cC-----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 309 GRPVVYSLAA--------EG-----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 309 gr~~l~~~~~--------~G-----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
++.+..+... .. ..-.....+.+++.++..|+.+|..
T Consensus 230 ~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 279 (282)
T TIGR01858 230 ATELKIAFSGAVKAYFAENPQANDPRYYMRPGKDAMKKVVRNKINVCGSA 279 (282)
T ss_pred CcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9977654211 00 1223344566677777778777754
No 278
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=96.62 E-value=0.012 Score=55.23 Aligned_cols=72 Identities=29% Similarity=0.213 Sum_probs=55.9
Q ss_pred HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.++...+.|++.+.+.---+.. +.+...+.+.++.+.+ .+|+.+.||||+.+|+.+++.+||+-|.+|+..+
T Consensus 36 ~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~--~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 36 AAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLL--VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred HHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHC--CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 3455577888888775321111 3355678889998876 6899999999999999999999999999999754
No 279
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.079 Score=47.92 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=62.3
Q ss_pred cHHHHHHHHHhcCCcEEEEec------------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCC
Q 017492 213 SWKDVKWLQTITKLPILVKGV------------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGR 280 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v------------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ 280 (370)
..++|+.+++.+++||| ..+ .+.++...+.++|++.|.+...-....++ +++ ++.+.. ..
T Consensus 54 gv~dIkai~~~v~vPII-GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~---~~~---~~i~~~-k~ 125 (229)
T COG3010 54 GVEDIKAIRAVVDVPII-GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDG---DLE---ELIARI-KY 125 (229)
T ss_pred chhhHHHHHhhCCCCeE-EEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcc---hHH---HHHHHh-hc
Confidence 46688999999999986 322 45689999999999999987653321111 232 222222 13
Q ss_pred CcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 281 IPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 281 ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
-..++.-.+++.+|..-|..+|+|.|+-
T Consensus 126 ~~~l~MAD~St~ee~l~a~~~G~D~IGT 153 (229)
T COG3010 126 PGQLAMADCSTFEEGLNAHKLGFDIIGT 153 (229)
T ss_pred CCcEEEeccCCHHHHHHHHHcCCcEEec
Confidence 3467777899999999999999999854
No 280
>PRK08999 hypothetical protein; Provisional
Probab=96.60 E-value=0.009 Score=57.77 Aligned_cols=77 Identities=22% Similarity=0.227 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHcCccEEEEccCCccC-C-CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNHGARQ-L-DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~gg~~-~-~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+-+.+++..|.+.|+|+|.++--..+. . +..+..++.+.++++.. ++||++-||| +.+++...+.+||++|.+-+
T Consensus 233 ~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~ 309 (312)
T PRK08999 233 CHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL-GPGDLEEAREHGAQGIAGIR 309 (312)
T ss_pred cCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC-CHHHHHHHHHhCCCEEEEEE
Confidence 467888999999999999987433221 1 12223467777777765 7999999999 88999999999999998876
Q ss_pred HH
Q 017492 311 PV 312 (370)
Q Consensus 311 ~~ 312 (370)
.+
T Consensus 310 ~~ 311 (312)
T PRK08999 310 GL 311 (312)
T ss_pred Ee
Confidence 43
No 281
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=96.60 E-value=0.0082 Score=54.91 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=70.8
Q ss_pred ccHHHHHHHHHhcCCcEEEEec--C-CHHH-HHHHHHcCccEEEEccCCccC-------------CC------C------
Q 017492 212 LSWKDVKWLQTITKLPILVKGV--L-TAED-ARIAVQAGAAGIIVSNHGARQ-------------LD------Y------ 262 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v--~-~~~~-a~~a~~aG~d~I~vs~~gg~~-------------~~------~------ 262 (370)
+..+.++++|+.+.+|+=+|.. . +++. ++.+.++|+|.+.++...|.. .. .
T Consensus 42 ~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~ 121 (215)
T PRK13813 42 SGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGAL 121 (215)
T ss_pred hCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCC
Confidence 4567899999877666668874 2 3333 477889999999996432210 00 0
Q ss_pred --------------------c----cchHHHHHHHHHHccCCCcEEEecCCCCHH-HHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 263 --------------------V----PATIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 263 --------------------~----~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~-dv~kalalGAd~V~igr~~l~~~~ 317 (370)
| ....+-+.++++....++ .+++|||+... ++.+++..|||.+.+||+++.+
T Consensus 122 ~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~-~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~-- 198 (215)
T PRK13813 122 EFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDEL-KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA-- 198 (215)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCc-EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC--
Confidence 0 001122223333322122 34999999853 6778888999999999986531
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q 017492 318 AEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 318 ~~G~~~v~~~l~~l~~el~ 336 (370)
. -..+.++.++++++
T Consensus 199 ---~-d~~~~~~~l~~~~~ 213 (215)
T PRK13813 199 ---A-DPREAAKAINEEIR 213 (215)
T ss_pred ---C-CHHHHHHHHHHHHh
Confidence 1 13445666666554
No 282
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=96.59 E-value=0.099 Score=48.46 Aligned_cols=96 Identities=9% Similarity=0.000 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCcEEEEec----CCHHHHHHHHHcCccEEEEcc--CCccCCCCccchHHHHHHHHHHcc---CCCcEEE
Q 017492 215 KDVKWLQTITKLPILVKGV----LTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQ---GRIPVFL 285 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v----~~~~~a~~a~~aG~d~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~ 285 (370)
+.++++|+. +.++-+... .+.+..+..++. +|.|.+=. -|..+...-+..++-+.++++... .++.|-+
T Consensus 107 ~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~l~~-vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeV 184 (228)
T PRK08091 107 LTIEWLAKQ-KTTVLIGLCLCPETPISLLEPYLDQ-IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISI 184 (228)
T ss_pred HHHHHHHHC-CCCceEEEEECCCCCHHHHHHHHhh-cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 456777765 442222222 345666666654 78887632 222112233344555555554432 2577999
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
||||+. +.+.+..++|||.+.+|++++
T Consensus 185 DGGI~~-~ti~~l~~aGaD~~V~GSalF 211 (228)
T PRK08091 185 DGSMTL-ELASYLKQHQIDWVVSGSALF 211 (228)
T ss_pred ECCCCH-HHHHHHHHCCCCEEEEChhhh
Confidence 999974 788888899999999999853
No 283
>PRK14057 epimerase; Provisional
Probab=96.58 E-value=0.12 Score=48.69 Aligned_cols=78 Identities=9% Similarity=0.050 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHcCccEEEEcc--CCccCCCCccchHHHHHHHHHHcc---CCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 234 LTAEDARIAVQAGAAGIIVSN--HGARQLDYVPATIMALEEVVKATQ---GRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~--~gg~~~~~~~~~~~~l~~i~~~~~---~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
.+.+..+..++. +|.|.+=. -|......-+..++-+.++++... .++.|-+||||.. +.+.+..++|||.+.+
T Consensus 143 Tp~e~i~~~l~~-vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~-~ti~~l~~aGad~~V~ 220 (254)
T PRK14057 143 TPLDVIIPILSD-VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQ-DQLPSLIAQGIDRVVS 220 (254)
T ss_pred CCHHHHHHHHHh-CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHCCCCEEEE
Confidence 345666666654 78777532 221112223444455555544432 2578999999976 6888889999999999
Q ss_pred cHHHH
Q 017492 309 GRPVV 313 (370)
Q Consensus 309 gr~~l 313 (370)
||+++
T Consensus 221 GSalF 225 (254)
T PRK14057 221 GSALF 225 (254)
T ss_pred ChHhh
Confidence 99854
No 284
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.57 E-value=0.019 Score=52.02 Aligned_cols=82 Identities=28% Similarity=0.280 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 212 LSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
...+.|+.++++. ++-|.+..+.+.++++.+.++|+++++--+ -..+.+..+.+. ++|++- |+.
T Consensus 45 ~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~----------~~~~v~~~~~~~---~i~~iP--G~~ 109 (196)
T PF01081_consen 45 NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG----------FDPEVIEYAREY---GIPYIP--GVM 109 (196)
T ss_dssp THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS------------HHHHHHHHHH---TSEEEE--EES
T ss_pred cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHHc---CCcccC--CcC
Confidence 3467789898887 566777778999999999999999995421 122344444433 566664 789
Q ss_pred CHHHHHHHHHhCCCEEEE
Q 017492 291 RGTDVFKALALGASGIFI 308 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~i 308 (370)
|+.++..|+.+||+.|=+
T Consensus 110 TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 110 TPTEIMQALEAGADIVKL 127 (196)
T ss_dssp SHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999998865
No 285
>PLN02591 tryptophan synthase
Probab=96.56 E-value=0.041 Score=51.80 Aligned_cols=41 Identities=27% Similarity=0.304 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.++.+|+.+++||.+.. +.++++++.+.+.|+|+++|..
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 4459999998999999974 6789999999999999999954
No 286
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.55 E-value=0.52 Score=45.19 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=72.4
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.++++|+.-. +.|+|.+-|+. ||.+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|
T Consensus 155 T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~Ki 229 (284)
T PRK12857 155 TDPEEARRFVEETGVDALAIAIGTAHGPY---KGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKV 229 (284)
T ss_pred CCHHHHHHHHHHHCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEE
Confidence 4678887655 67999999874 5543 2333 567899999887 7898888754443 66777999999999
Q ss_pred EEcHHHHHHHHh--------c--C---HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA--------E--G---EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~--------~--G---~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+..+... . . ..-.....+.+++.++..|+.+|..
T Consensus 230 Ni~T~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12857 230 NIDTNIREAFVARLREVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSA 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977554211 0 0 1123334456667777777777753
No 287
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.54 E-value=0.022 Score=52.94 Aligned_cols=106 Identities=21% Similarity=0.325 Sum_probs=68.4
Q ss_pred ceEEEEeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCcccccc
Q 017492 124 IRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (370)
Q Consensus 124 ~~~~Qly~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (370)
..|+.|-.-.|.. ...+.++++++. |+..+-+..|.|+..+|..++.-.+-.|.
T Consensus 91 ~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPl------------------- 151 (248)
T cd04728 91 TDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPL------------------- 151 (248)
T ss_pred CCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC-------------------
Confidence 3466654433322 234556666665 99988777788887777766521111110
Q ss_pred chhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
++.+.+ +..-.+++.|+.+++..++||++-+ +.+++|+..+++.|+|++.+.
T Consensus 152 ----g~pIGs-g~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 152 ----GSPIGS-GQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred ----CcCCCC-CCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 000111 1112257889999998899999875 789999999999999999884
No 288
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=96.52 E-value=0.014 Score=54.92 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=54.8
Q ss_pred HHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 237 EDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 237 ~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.++.+...| +|+|+|++.+ .+.++.++.|.++++.. .++|+++.||+ +++.+.+++.. ||++.+||.|=
T Consensus 161 e~a~~~~~~~~aDavivtG~~----TG~~~d~~~l~~vr~~~-~~~PvllggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 161 SIALDTVERGLADAVILSGKT----TGTEVDLELLKLAKETV-KDTPVLAGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred HHHHHHHHhcCCCEEEECcCC----CCCCCCHHHHHHHHhcc-CCCeEEEECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 4577777666 9999998753 13356788888887754 36899999999 45999999887 99999999863
No 289
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.50 E-value=0.021 Score=51.92 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.|+++++.. ++-|....+++.++++.+.++|+++|+- -+ ...+.+..+.+ . ++|++ =|+.|
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS-P~---------~~~~vi~~a~~-~--~i~~i--PG~~T 106 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS-PG---------TTQELLAAAND-S--DVPLL--PGAAT 106 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC-CC---------CCHHHHHHHHH-c--CCCEe--CCCCC
Confidence 456788888877 4557777789999999999999999843 21 12233333332 2 45544 58999
Q ss_pred HHHHHHHHHhCCCEEE
Q 017492 292 GTDVFKALALGASGIF 307 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ 307 (370)
+.++..++.+||+.|=
T Consensus 107 ptEi~~A~~~Ga~~vK 122 (201)
T PRK06015 107 PSEVMALREEGYTVLK 122 (201)
T ss_pred HHHHHHHHHCCCCEEE
Confidence 9999999999999874
No 290
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=96.49 E-value=0.087 Score=49.62 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=54.2
Q ss_pred HHHHHH-HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 237 EDARIA-VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 237 ~~a~~a-~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+.++.+ ...++|+|+|++.. .+.+++.+.+.++++.+ .+||++.+|+. .+.+.+.|.. ||++.+|+.|-.
T Consensus 162 ~~~~~a~~~~~aDaviVtG~~----TG~~~~~~~l~~vr~~~--~~PVlvGSGvt-~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 162 EAAKDAVERGGADAVIVTGKA----TGEPPDPEKLKRVREAV--PVPVLVGSGVT-PENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred HHHHHHHHhcCCCEEEECCcc----cCCCCCHHHHHHHHhcC--CCCEEEecCCC-HHHHHHHHHh-CCEEEEeeeeee
Confidence 334454 57899999998742 13467888899999887 49999999985 5889888764 999999998753
No 291
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.49 E-value=0.03 Score=54.80 Aligned_cols=67 Identities=22% Similarity=0.311 Sum_probs=51.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.++.++++|+|.|.++.+.|.. ....+.+.++++..+ ++||++ |.+.+.+++.+++.+|||+|.+|
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G~~----~~~~~~i~~ik~~~p-~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHGHS----VYVIEMIKFIKKKYP-NVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCCCc----HHHHHHHHHHHHHCC-CceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 55788899999999987543321 234566777777643 588887 99999999999999999999873
No 292
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=96.46 E-value=0.034 Score=53.62 Aligned_cols=93 Identities=18% Similarity=0.167 Sum_probs=66.9
Q ss_pred HHHHHHHhcC-----CcEEEEecCCHHHHHHHHH------cCccEEEEccC--CccCCCCccchHHHHHHHHHHccCCCc
Q 017492 216 DVKWLQTITK-----LPILVKGVLTAEDARIAVQ------AGAAGIIVSNH--GARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 216 ~i~~ir~~~~-----~Pv~vK~v~~~~~a~~a~~------aG~d~I~vs~~--gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.++.+|+..+ .+|. -.+.+.+++..+++ +|+|.|.+.|- .... ...+.+.+.++.+.++.+.+
T Consensus 189 av~~~r~~~~~~~~~~kIe-VEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~---~~~~~e~l~~av~~~~~~~~ 264 (308)
T PLN02716 189 AVQSADKYLEEKGLSMKIE-VETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLEN---GDVDVSMLKEAVELINGRFE 264 (308)
T ss_pred HHHHHHHhhhhcCCCeeEE-EEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccc---cCCCHHHHHHHHHhhCCCce
Confidence 4666666321 2332 34678999999999 99999999884 1111 11245666666666666789
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+-++|||. .+.+.++..+|+|.+.+|....
T Consensus 265 lEaSGGIt-~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 265 TEASGNVT-LDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred EEEECCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 99999995 5889888889999999998653
No 293
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=96.44 E-value=0.038 Score=54.02 Aligned_cols=95 Identities=22% Similarity=0.193 Sum_probs=59.4
Q ss_pred HHHhcCCcEEEEec------CC-------HH----HHHHHHHcCccEEEEccCC---c-------cCC------CCccch
Q 017492 220 LQTITKLPILVKGV------LT-------AE----DARIAVQAGAAGIIVSNHG---A-------RQL------DYVPAT 266 (370)
Q Consensus 220 ir~~~~~Pv~vK~v------~~-------~~----~a~~a~~aG~d~I~vs~~g---g-------~~~------~~~~~~ 266 (370)
=.+.|++|+++-.. .+ ++ -++.+.+.|||.|.+--.+ + ... ......
T Consensus 187 ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~ 266 (348)
T PRK09250 187 EAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHP 266 (348)
T ss_pred HHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccch
Confidence 34457999887432 11 11 2678899999999985332 1 000 011123
Q ss_pred HHHHHHHHHHc-cCCCcEEEecCCCCH-HH----HHHH---HHhCCCEEEEcHHHHH
Q 017492 267 IMALEEVVKAT-QGRIPVFLDGGVRRG-TD----VFKA---LALGASGIFIGRPVVY 314 (370)
Q Consensus 267 ~~~l~~i~~~~-~~~ipvi~~GGI~~~-~d----v~ka---lalGAd~V~igr~~l~ 314 (370)
.+.+..+.+.+ .+++||+.+||=... +| +..+ +..||.++.+||-...
T Consensus 267 ~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ 323 (348)
T PRK09250 267 IDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQ 323 (348)
T ss_pred HHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhc
Confidence 34555566654 347999999999853 23 3446 7789999999997653
No 294
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.43 E-value=0.14 Score=47.05 Aligned_cols=91 Identities=15% Similarity=0.057 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCcEEEEe--------c---CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 214 WKDVKWLQTITKLPILVKG--------V---LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~--------v---~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
++.++++++.+++|++... + .+.++++.+.++|+|.|.+...-.... .+....+.+..+++. ..++
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p-~~~~~~~~i~~~~~~--~~i~ 121 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRP-DGETLAELVKRIKEY--PGQL 121 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCCCHHHHHHHHHhC--CCCe
Confidence 5678888888899986321 1 235679999999999887754211000 001222344444442 3677
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++. ++.+.+++.++..+|+|.+.++
T Consensus 122 vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 122 LMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred EEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 665 5789999999999999999774
No 295
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.40 E-value=0.15 Score=46.66 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=58.9
Q ss_pred HHHHHHHHHhcCCcEEE---Eec--------CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCc
Q 017492 214 WKDVKWLQTITKLPILV---KGV--------LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIP 282 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~v---K~v--------~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ip 282 (370)
.+.++++++.+++|++. |.. .+.++++.+.++|+|.|.+.....+ ...+....+.+..+++.. +++
T Consensus 49 ~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~p~~~~~~~~i~~~~~~g--~~~ 125 (219)
T cd04729 49 VEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-RPDGETLAELIKRIHEEY--NCL 125 (219)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-CCCCcCHHHHHHHHHHHh--CCe
Confidence 35667777777889863 222 1345889999999998877432111 001112234455555432 577
Q ss_pred EEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 283 VFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 283 vi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+++ ++.+.+++.++..+|+|.+.+.
T Consensus 126 iiv--~v~t~~ea~~a~~~G~d~i~~~ 150 (219)
T cd04729 126 LMA--DISTLEEALNAAKLGFDIIGTT 150 (219)
T ss_pred EEE--ECCCHHHHHHHHHcCCCEEEcc
Confidence 766 6899999999999999998653
No 296
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=96.40 E-value=0.87 Score=43.69 Aligned_cols=107 Identities=20% Similarity=0.262 Sum_probs=72.0
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.+|++|+... +.|+|.+-|+. ||-+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.|++.+|..-|
T Consensus 155 T~peeA~~Fv~~TgvD~LAvaiGt~HG~y---~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~Ki 229 (284)
T PRK12737 155 TNPDAAAEFVERTGIDSLAVAIGTAHGLY---KGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKV 229 (284)
T ss_pred CCHHHHHHHHHHhCCCEEeeccCcccccc---CCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 4678887655 69999999874 5543 2333 667899999887 7898887754433 66777999999999
Q ss_pred EEcHHHHHHHHh--------c-C----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA--------E-G----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~--------~-G----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+..+... . + ..-.....+.+++.++..|..+|..
T Consensus 230 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~ 281 (284)
T PRK12737 230 NVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKAAMKEVVREKIKVCGSE 281 (284)
T ss_pred EeCcHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543210 0 0 1113333455667777777777753
No 297
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.40 E-value=0.89 Score=43.63 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=74.2
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCH-HHHHHHHHhCCCEE
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRG-TDVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~-~dv~kalalGAd~V 306 (370)
.++++|+.-. +.|+|.+-++. ||-+ .+.| .++.|.+|.+.+ ++|+..=||=..+ +++.+++.+|..=|
T Consensus 156 T~peea~~Fv~~TgvD~LAvaiGt~HG~Y---~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~Ki 230 (286)
T PRK08610 156 ADPKECQELVEKTGIDALAPALGSVHGPY---KGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKI 230 (286)
T ss_pred CCHHHHHHHHHHHCCCEEEeecccccccc---CCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEE
Confidence 5788887655 57999999874 5543 2333 567899998887 7999999977666 67778999999999
Q ss_pred EEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+-.+... .. ..-.....+.+++.++..|+.+|..
T Consensus 231 Ni~T~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~fgs~ 282 (286)
T PRK08610 231 NVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTS 282 (286)
T ss_pred EeccHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999977543211 00 1123334456667777777777754
No 298
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.062 Score=52.44 Aligned_cols=90 Identities=18% Similarity=0.361 Sum_probs=70.6
Q ss_pred CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhH
Q 017492 122 PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLA 201 (370)
Q Consensus 122 ~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (370)
+.+....+-.+.|.+.+.++++.++++|++.+.||- |-++.+.
T Consensus 141 ~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHG-------Rtr~~kg------------------------------ 183 (358)
T KOG2335|consen 141 NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHG-------RTREQKG------------------------------ 183 (358)
T ss_pred CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEec-------ccHHhcC------------------------------
Confidence 356667777788999999999999999999988762 2222210
Q ss_pred HHhhhcCCCCccHHHHHHHHHhcC-CcEEEEe-cCCHHHHHHHHH-cCccEEEEc
Q 017492 202 AYVAGQIDRSLSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (370)
Q Consensus 202 ~~~~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~-v~~~~~a~~a~~-aG~d~I~vs 253 (370)
...+..+|+.|+.|++..+ +||++-| |.+.+|+.++.+ .|+|||-+.
T Consensus 184 -----~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335|consen 184 -----LKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred -----CCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEec
Confidence 0133568999999999997 9999976 689999999988 999999764
No 299
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=96.27 E-value=0.47 Score=45.60 Aligned_cols=110 Identities=24% Similarity=0.308 Sum_probs=74.6
Q ss_pred CCHHHHHHH-HHcCccEEEEcc---CCccCCCCccc--hHHHHHHHHHHccCCCcEEEecCCCCHH-HHHHHHHhCCCEE
Q 017492 234 LTAEDARIA-VQAGAAGIIVSN---HGARQLDYVPA--TIMALEEVVKATQGRIPVFLDGGVRRGT-DVFKALALGASGI 306 (370)
Q Consensus 234 ~~~~~a~~a-~~aG~d~I~vs~---~gg~~~~~~~~--~~~~l~~i~~~~~~~ipvi~~GGI~~~~-dv~kalalGAd~V 306 (370)
.+|++|+.. .+.|+|.+-++- ||.+... ..| .++.|.+|.+.++ ++|+..=||=..+. ++.+++.+|..=|
T Consensus 155 TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~-~~p~Ld~~~L~~I~~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~Ki 232 (287)
T PF01116_consen 155 TDPEEAKEFVEETGVDALAVAIGTAHGMYKGG-KKPKLDFDRLKEIREAVP-DIPLVLHGGSGLPDEQIRKAIKNGISKI 232 (287)
T ss_dssp SSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSS-SSTC--HHHHHHHHHHHH-TSEEEESSCTTS-HHHHHHHHHTTEEEE
T ss_pred cCHHHHHHHHHHhCCCEEEEecCccccccCCC-CCcccCHHHHHHHHHhcC-CCCEEEECCCCCCHHHHHHHHHcCceEE
Confidence 467887665 589999999974 5543221 134 4678999998764 79999988766555 8888999999999
Q ss_pred EEcHHHHHHHHhc-------C------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 307 FIGRPVVYSLAAE-------G------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 307 ~igr~~l~~~~~~-------G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
-+++.+..+.... . ..-.....+.+++.+...|..+|..
T Consensus 233 Ni~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~gs~ 284 (287)
T PF01116_consen 233 NIGTELRRAFTDALREYLAENPDKYDPRKLMKAAKEAMKEVVKEKIRLFGSA 284 (287)
T ss_dssp EESHHHHHHHHHHHHHHHHHSTTEHSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEehHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999876543210 0 1223344566777777888888764
No 300
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=96.25 E-value=0.088 Score=49.94 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.++.+|+.++.|+.+.. +.++++++.+.++|+|+++|+.
T Consensus 191 ~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGS 232 (263)
T CHL00200 191 KKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECH
Confidence 4568999999999999975 5779999999999999999954
No 301
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.24 E-value=0.2 Score=50.11 Aligned_cols=215 Identities=17% Similarity=0.125 Sum_probs=107.8
Q ss_pred eeEcCeeecCceeecccccccccCCh-----hhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCC--h
Q 017492 63 TTVLGFKISMPIMIAPTAMQKMAHPE-----GEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKD--R 135 (370)
Q Consensus 63 ~~l~g~~l~~Pi~iapm~~~~~~~~~-----~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d--~ 135 (370)
.+|.+.++++-|+.|||+-.....++ ..++.-+.-++-|+.+++++....+........+ ...|+-...+ .
T Consensus 5 ~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~--~~~~~~~~~~~~i 82 (382)
T cd02931 5 IKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMP--SLPCPTYNPTAFI 82 (382)
T ss_pred eeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCC--CccccccCCHHHh
Confidence 56778999999999999632222222 2345555555668888886543222110000001 1112211112 3
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHH
Q 017492 136 NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWK 215 (370)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 215 (370)
+...++++.+.+.|++++ +-+... .|+......... +..+....+ . . ...........+.+
T Consensus 83 ~~~k~l~davh~~G~~i~-~QL~H~-~Gr~~~~~~~~~--~~~~~ps~~---~--~----------~~~~~~~p~~mt~~ 143 (382)
T cd02931 83 RTAKEMTERVHAYGTKIF-LQLTAG-FGRVCIPGFLGE--DKPVAPSPI---P--N----------RWLPEITCRELTTE 143 (382)
T ss_pred HHHHHHHHHHHHcCCEEE-EEccCc-CCCccCccccCC--CCccCCCCC---C--C----------CcCCCCCCCcCCHH
Confidence 456777788888898754 343321 121110000000 000000000 0 0 00000011345778
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc-CCcc---C----------CCCccc-------hHHHHHHHH
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-HGAR---Q----------LDYVPA-------TIMALEEVV 274 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~-~gg~---~----------~~~~~~-------~~~~l~~i~ 274 (370)
+|+++.+.+ .+.|++|.++|.|+|.+.. |.|+ | -.+|-+ ..+.+..|+
T Consensus 144 eI~~ii~~f-----------~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr 212 (382)
T cd02931 144 EVETFVGKF-----------GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIK 212 (382)
T ss_pred HHHHHHHHH-----------HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHH
Confidence 888888764 3678999999999999964 4132 1 112322 335666677
Q ss_pred HHccCCCcEEE----------------------ecCCCCHH---HHHHHHH-hCCCEEEEcH
Q 017492 275 KATQGRIPVFL----------------------DGGVRRGT---DVFKALA-LGASGIFIGR 310 (370)
Q Consensus 275 ~~~~~~ipvi~----------------------~GGI~~~~---dv~kala-lGAd~V~igr 310 (370)
+.++.+.||.+ .||+ +.+ ++++.|. .|.|.+-+..
T Consensus 213 ~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~-~~e~~~~~~~~l~~~gvD~l~vs~ 273 (382)
T cd02931 213 ARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGR-DLEEGLKAAKILEEAGYDALDVDA 273 (382)
T ss_pred HhcCCCceEEEEEechhhccccccccccccccccCCC-CHHHHHHHHHHHHHhCCCEEEeCC
Confidence 66654545443 2233 334 4556665 7999998753
No 302
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.21 E-value=0.054 Score=50.49 Aligned_cols=106 Identities=21% Similarity=0.300 Sum_probs=68.7
Q ss_pred ceEEEEeecCCh----HHHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCcccccc
Q 017492 124 IRFFQLYVYKDR----NVVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEAN 196 (370)
Q Consensus 124 ~~~~Qly~~~d~----~~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 196 (370)
..|+.|-.-.|. ....+.+++++.. |+..+-+..|.|+..+|..++.-.+-.|-
T Consensus 91 ~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPl------------------- 151 (250)
T PRK00208 91 TNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPL------------------- 151 (250)
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCC-------------------
Confidence 457766543332 2334566666666 99988677788887777766521111110
Q ss_pred chhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 197 DSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 197 ~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
++.+.+ +.+-.+++.++.+++..++||++-+ +.+++|+..+++.|+|++.|.
T Consensus 152 ----g~pIGs-g~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 152 ----GAPIGS-GLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred ----CcCCCC-CCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 000111 1112247779999998899999865 689999999999999999884
No 303
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=96.21 E-value=0.044 Score=49.75 Aligned_cols=98 Identities=15% Similarity=0.234 Sum_probs=68.7
Q ss_pred cHHHHHHHHHhcCC-cEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~~~-Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
.++.+-.+.+..+. |++ .+.+.++.+++++.|+..|-|-|..=..+..-..+ ...+.+-++.++-+++-+||.|
T Consensus 174 ~lk~l~k~~K~L~me~LV--EVn~~eEm~raleiGakvvGvNNRnL~sFeVDlst---TskL~E~i~kDvilva~SGi~t 248 (289)
T KOG4201|consen 174 LLKELYKISKDLGMEPLV--EVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLST---TSKLLEGIPKDVILVALSGIFT 248 (289)
T ss_pred HHHHHHHHHHHcCCccee--eeccHHHHHHHHHhCcEEEeecCCccceeeechhh---HHHHHhhCccceEEEeccCCCC
Confidence 34445555555543 432 35788999999999999988877533222222222 2333333445777888999999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 292 GTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~ 315 (370)
++|+.++-..|..+|.+|-.++..
T Consensus 249 pdDia~~q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 249 PDDIAKYQKAGVKAVLVGESLMKQ 272 (289)
T ss_pred HHHHHHHHHcCceEEEecHHHHhc
Confidence 999999999999999999999874
No 304
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.19 E-value=0.043 Score=50.97 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHhcC-CcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
..|+.|+++++.++ +||+.=+ +.+.+++...+++|||+|.+.
T Consensus 177 a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 177 ADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred hhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 47999999999984 9987654 689999999999999999885
No 305
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.16 E-value=0.027 Score=58.68 Aligned_cols=76 Identities=22% Similarity=0.169 Sum_probs=59.1
Q ss_pred HHHHHHHHcCccEEEEccCCcc--CCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-----------HHHHHHHHhCC
Q 017492 237 EDARIAVQAGAAGIIVSNHGAR--QLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-----------TDVFKALALGA 303 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~--~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-----------~dv~kalalGA 303 (370)
+.|+...+.|+|-|.+-+--+. ....-.+.++.+.++.+.+ .+|+.+-||||+- +++.++|.+||
T Consensus 271 e~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~--~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Ga 348 (538)
T PLN02617 271 ELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV--FVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGA 348 (538)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC--CCCEEEcCCccccccccccccchHHHHHHHHHcCC
Confidence 5588889999999998654321 1112234577888888877 7999999999998 55899999999
Q ss_pred CEEEEcHHHHH
Q 017492 304 SGIFIGRPVVY 314 (370)
Q Consensus 304 d~V~igr~~l~ 314 (370)
|-|.+|+..+.
T Consensus 349 dkV~i~s~Av~ 359 (538)
T PLN02617 349 DKISIGSDAVY 359 (538)
T ss_pred CEEEEChHHHh
Confidence 99999997665
No 306
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.12 E-value=0.061 Score=50.92 Aligned_cols=89 Identities=25% Similarity=0.267 Sum_probs=66.8
Q ss_pred cHH-HHHHHHHhcCC-cEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH--ccCCCcEEEecC
Q 017492 213 SWK-DVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA--TQGRIPVFLDGG 288 (370)
Q Consensus 213 ~~~-~i~~ir~~~~~-Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~--~~~~ipvi~~GG 288 (370)
+|+ .++..|+..+. +-+-=.+-+.+++..|+++|+|.|.+.|- +.+.+.++.+. .++++-+-+|||
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm----------~~e~~~~av~~l~~~~~~~lEaSGg 242 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM----------SPEELKEAVKLLGLAGRALLEASGG 242 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC----------CHHHHHHHHHHhccCCceEEEEeCC
Confidence 454 48888887643 32333468999999999999999999884 22445555554 445788899999
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~~ 312 (370)
|. .+.+..+..+|.|.+.+|.+.
T Consensus 243 It-~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 243 IT-LENIREYAETGVDVISVGALT 265 (280)
T ss_pred CC-HHHHHHHhhcCCCEEEeCccc
Confidence 94 588888888999999999754
No 307
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.10 E-value=0.025 Score=56.73 Aligned_cols=67 Identities=12% Similarity=0.238 Sum_probs=51.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.++.+.++|+|.|.+....|. +....+.+.++++..+ +++|+ .|+|.|.+++..++.+|||+|.+|
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~----~~~~~~~v~~ik~~~p-~~~vi-~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH----STRIIELVKKIKTKYP-NLDLI-AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC----ChhHHHHHHHHHhhCC-CCcEE-EEecCCHHHHHHHHHcCCCEEEEC
Confidence 6789999999999998653321 2345567778877653 45544 588999999999999999999877
No 308
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=96.09 E-value=0.052 Score=51.86 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=75.9
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc-----cCCCcEEE-ecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT-----QGRIPVFL-DGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-----~~~ipvi~-~GGI~~~~dv~kalalGAd~V~igr 310 (370)
++|..+++.|+..|++|..+...-....|.+-++..+..++ +.++-+++ +|-+|+.-|++-.+..|||+|.=--
T Consensus 146 ~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA~AV~PYl 225 (287)
T PF04898_consen 146 EEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGADAVNPYL 225 (287)
T ss_dssp HHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-SEEEEHC
T ss_pred HHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCHhhhcHHH
Confidence 45788899999999999765322122334555555555553 33565555 6789999999998899999985332
Q ss_pred HH--HHHHHhcC-------HHHHHHHHHHHHHHHHHHHHHcCCCChhhhcccceee
Q 017492 311 PV--VYSLAAEG-------EKGVRRVLEMLREEFELAMALSGCRSLKEITRDHIVT 357 (370)
Q Consensus 311 ~~--l~~~~~~G-------~~~v~~~l~~l~~el~~~m~~~G~~~l~~l~~~~l~~ 357 (370)
+| +..+...| ++.+.++.+.+.++|...|..+|.+.+..-++.-+.-
T Consensus 226 a~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~SY~gaqiFe 281 (287)
T PF04898_consen 226 AYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQSYRGAQIFE 281 (287)
T ss_dssp CHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHHHCCS--EE
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhhcccceeee
Confidence 22 11111222 3678899999999999999999999999887665543
No 309
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.02 E-value=0.063 Score=49.24 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=60.6
Q ss_pred cHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 213 SWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
..+.|+.+++.. ++-|....+.+.++++.+.++|+++++.-+. ..+.+..+.+. .+|++ =|+.|
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~----------~~~vi~~a~~~---~i~~i--PG~~T 117 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGL----------TPPLLKAAQEG---PIPLI--PGVST 117 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCC----------CHHHHHHHHHc---CCCEe--CCCCC
Confidence 456789999877 4557777789999999999999999976321 11444444332 45554 47999
Q ss_pred HHHHHHHHHhCCCEEEE
Q 017492 292 GTDVFKALALGASGIFI 308 (370)
Q Consensus 292 ~~dv~kalalGAd~V~i 308 (370)
+.++..++.+||+.|-+
T Consensus 118 ptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 118 PSELMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHHHHHCCCCEEEE
Confidence 99999999999999877
No 310
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.00 E-value=0.061 Score=49.12 Aligned_cols=81 Identities=23% Similarity=0.247 Sum_probs=58.6
Q ss_pred cHHHHHHHHHhcC--CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTITK--LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~--~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.|+.+++..+ +.|.+..+.+.++++.+.++|+|+++..+ ...+.+. .+... .++++. |..
T Consensus 48 ~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~----------~~~~v~~-~~~~~--~~~~~~--G~~ 112 (206)
T PRK09140 48 PFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN----------TDPEVIR-RAVAL--GMVVMP--GVA 112 (206)
T ss_pred HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC----------CCHHHHH-HHHHC--CCcEEc--ccC
Confidence 3457899998875 45666678999999999999999996522 1112222 22222 455554 399
Q ss_pred CHHHHHHHHHhCCCEEEE
Q 017492 291 RGTDVFKALALGASGIFI 308 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~i 308 (370)
|.+++.++..+|||.|.+
T Consensus 113 t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 113 TPTEAFAALRAGAQALKL 130 (206)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 999999999999999987
No 311
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.99 E-value=0.12 Score=48.30 Aligned_cols=126 Identities=16% Similarity=0.260 Sum_probs=81.0
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
|...+.+.+.+.++.+++.|++.+++.+-. .|
T Consensus 67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~------------------------------------------------~d 98 (248)
T PRK11572 67 YSDGEFAAMLEDIATVRELGFPGLVTGVLD------------------------------------------------VD 98 (248)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEeeEC------------------------------------------------CC
Confidence 544456677888888899999998864321 12
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.+.++.+.+.. ++|+.+=-- .++.. .+.+.+.|++.|-.|+... .....++.|.++.+...+.+ |
T Consensus 99 g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~----~a~~g~~~L~~lv~~a~~~~-I 173 (248)
T PRK11572 99 GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ----DAEQGLSLIMELIAASDGPI-I 173 (248)
T ss_pred CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC----CHHHHHHHHHHHHHhcCCCE-E
Confidence 234666677777766 577766432 34444 5678999999997754211 12233455666666544444 8
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++.|||+. +++.+.+..|+..+=..
T Consensus 174 m~GgGV~~-~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 174 MAGAGVRL-SNLHKFLDAGVREVHSS 198 (248)
T ss_pred EeCCCCCH-HHHHHHHHcCCCEEeeC
Confidence 88888865 77877778998877543
No 312
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.94 E-value=1.2 Score=42.75 Aligned_cols=182 Identities=18% Similarity=0.180 Sum_probs=104.1
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee-----cCCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~-----s~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ |++.+.+.+|.. +..+ -+.++++.. .+-+.
T Consensus 6 ~~~~~TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~ 84 (292)
T PRK03170 6 ITALVTPFKEDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAE 84 (292)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHH
Confidence 46677887544444555556778888888876544 233456666532 2222 245566542 35677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++++.|+++|++++.+. .|... +. ..+-..+..
T Consensus 85 ~i~~a~~a~~~G~d~v~~~--pP~~~------------~~-------------------------------~~~~i~~~~ 119 (292)
T PRK03170 85 AIELTKFAEKAGADGALVV--TPYYN------------KP-------------------------------TQEGLYQHF 119 (292)
T ss_pred HHHHHHHHHHcCCCEEEEC--CCcCC------------CC-------------------------------CHHHHHHHH
Confidence 7788899999999999874 23210 00 001123445
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.. .+++..+++.+.+ +-+|.-+. .....+.++.+..+++..|+. |
T Consensus 120 ~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~~~p~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G-- 186 (292)
T PRK03170 120 KAIAEATDLPIILYNVPGRTGVDILPETVARLAEHPNIVGIKEAT----------GDLERVSELIELVPDDFAVYS-G-- 186 (292)
T ss_pred HHHHhcCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEEE-C--
Confidence 6666667889887643 4567777765432 23333211 123344445444433444443 3
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
....++..+.+|+++++.|...+
T Consensus 187 -~d~~~~~~l~~G~~G~is~~~n~ 209 (292)
T PRK03170 187 -DDALALPFLALGGVGVISVAANV 209 (292)
T ss_pred -ChHhHHHHHHcCCCEEEEhHHhh
Confidence 22346677899999999887543
No 313
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=95.92 E-value=0.72 Score=43.42 Aligned_cols=94 Identities=27% Similarity=0.414 Sum_probs=63.4
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCc-cc--hHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV-PA--TIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~-~~--~~~~l~~i~~~~~~~ipv 283 (370)
+++.++++-+ .++||++|-. .|.++ |+..+..|-..|++.-.|=|..+.. +- .+..++-+++.. .+||
T Consensus 141 NF~LLke~G~-~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~T--HLPV 217 (286)
T COG2876 141 NFALLKEVGR-QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQET--HLPV 217 (286)
T ss_pred hhHHHHHhcc-cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhhc--CCCE
Confidence 4555666543 5899999965 45555 6777889999999988887765543 22 334667666654 7999
Q ss_pred EEec----CCCCHHH--HHHHHHhCCCEEEEc
Q 017492 284 FLDG----GVRRGTD--VFKALALGASGIFIG 309 (370)
Q Consensus 284 i~~G----GI~~~~d--v~kalalGAd~V~ig 309 (370)
|+|= |=|+... +..|++.|||++|+-
T Consensus 218 ivDpSH~~Grr~lv~pla~AA~AaGAdglmiE 249 (286)
T COG2876 218 IVDPSHATGRRDLVEPLAKAAIAAGADGLMIE 249 (286)
T ss_pred EECCCCcccchhhHHHHHHHHHhccCCeeEEE
Confidence 9974 3333222 234677899999985
No 314
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=95.90 E-value=0.082 Score=51.98 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=44.0
Q ss_pred HHHHHH--cCccEEEEccCCcc----CCCC------ccchHHHHHHHHHHccCCCcEEE-ecCCCCHHHHHH----HHHh
Q 017492 239 ARIAVQ--AGAAGIIVSNHGAR----QLDY------VPATIMALEEVVKATQGRIPVFL-DGGVRRGTDVFK----ALAL 301 (370)
Q Consensus 239 a~~a~~--aG~d~I~vs~~gg~----~~~~------~~~~~~~l~~i~~~~~~~ipvi~-~GGI~~~~dv~k----alal 301 (370)
++.+.+ .|+|.+.+--.+.- ..+. .....+.+.++.+.. .+|++. +||. +.+++.+ ++..
T Consensus 190 ~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~--~~P~vvlsgG~-~~~~f~~~l~~A~~a 266 (340)
T PRK12858 190 MEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT--DLPFIFLSAGV-SPELFRRTLEFACEA 266 (340)
T ss_pred HHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC--CCCEEEECCCC-CHHHHHHHHHHHHHc
Confidence 456664 99999998432110 0011 111123455555554 677666 7777 6566555 5557
Q ss_pred CC--CEEEEcHHHHH
Q 017492 302 GA--SGIFIGRPVVY 314 (370)
Q Consensus 302 GA--d~V~igr~~l~ 314 (370)
|| ++|.+||....
T Consensus 267 Ga~f~Gvl~GRniwq 281 (340)
T PRK12858 267 GADFSGVLCGRATWQ 281 (340)
T ss_pred CCCccchhhhHHHHh
Confidence 99 99999998754
No 315
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.87 E-value=1.4 Score=42.36 Aligned_cols=181 Identities=15% Similarity=0.130 Sum_probs=105.2
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee-----cCCCCCCHHHHhc-------cCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL-----SSWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~-----s~~~~~~~eei~~-------~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++=..+.+-..+.|+...+ |++.+.+.+|..+ ... -+.+.++-. .+.+.
T Consensus 5 ~~a~~TPf~~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ 83 (294)
T TIGR02313 5 IAPLITPFKRNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDE 83 (294)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHH
Confidence 46778887544434444445677777778875433 2344567666432 122 244555432 34556
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++++.|++.|++++.+. .|.. + +. +.+-..+..
T Consensus 84 ai~~a~~A~~~Gad~v~v~--pP~y----------~--~~-------------------------------~~~~l~~~f 118 (294)
T TIGR02313 84 TLELTKFAEEAGADAAMVI--VPYY----------N--KP-------------------------------NQEALYDHF 118 (294)
T ss_pred HHHHHHHHHHcCCCEEEEc--CccC----------C--CC-------------------------------CHHHHHHHH
Confidence 6778888999999999874 2321 0 00 001123456
Q ss_pred HHHHHhc-CCcEEEEec-------CCHHHHHHHHH--cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 218 KWLQTIT-KLPILVKGV-------LTAEDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 218 ~~ir~~~-~~Pv~vK~v-------~~~~~a~~a~~--aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
+.|.+.+ ++||++=.+ ++++...++.+ -.+-+|.-+. ..+..+.++.+..+.+..|+. |
T Consensus 119 ~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~ss----------~d~~~~~~~~~~~~~~~~v~~-G 187 (294)
T TIGR02313 119 AEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRKDCPNIVGAKESN----------KDFEHLNHLFLEAGRDFLLFC-G 187 (294)
T ss_pred HHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c
Confidence 6777778 799987654 45677777763 3455555432 123444455444433454433 3
Q ss_pred CCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 288 GVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~igr~~ 312 (370)
....++.++.+||++++.|..-
T Consensus 188 ---~d~~~~~~l~~Ga~G~is~~~n 209 (294)
T TIGR02313 188 ---IELLCLPMLAIGAAGSIAATAN 209 (294)
T ss_pred ---chHHHHHHHHCCCCEEEecHHh
Confidence 2255667889999999988754
No 316
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.84 E-value=0.057 Score=49.87 Aligned_cols=81 Identities=16% Similarity=0.114 Sum_probs=55.8
Q ss_pred cHHHHHHHHHhc-----CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec
Q 017492 213 SWKDVKWLQTIT-----KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG 287 (370)
Q Consensus 213 ~~~~i~~ir~~~-----~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G 287 (370)
..+.|+.+++.+ ++-|.+..+++.++++.+.++|+++|+--+ ...+.+..+.+ . ++|++ =
T Consensus 53 a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP~----------~~~~v~~~~~~-~--~i~~i--P 117 (222)
T PRK07114 53 AHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTPL----------FNPDIAKVCNR-R--KVPYS--P 117 (222)
T ss_pred HHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHH-c--CCCEe--C
Confidence 445566665433 255777778999999999999999995311 12233333332 2 45554 5
Q ss_pred CCCCHHHHHHHHHhCCCEEEE
Q 017492 288 GVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~i 308 (370)
|+.|+.++..++.+||+.|=+
T Consensus 118 G~~TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 118 GCGSLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEE
Confidence 899999999999999997643
No 317
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=95.81 E-value=0.051 Score=52.77 Aligned_cols=89 Identities=21% Similarity=0.379 Sum_probs=59.6
Q ss_pred CCCceEEEEeecCC--hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccch
Q 017492 121 GPGIRFFQLYVYKD--RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDS 198 (370)
Q Consensus 121 ~~~~~~~Qly~~~d--~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (370)
.+.|..+.+-.+.+ .+.+.+++++++++|+++|.||.-++.- .
T Consensus 121 ~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q---------~-------------------------- 165 (309)
T PF01207_consen 121 VPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ---------R-------------------------- 165 (309)
T ss_dssp -SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC---------C--------------------------
T ss_pred cccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh---------c--------------------------
Confidence 33456666655444 6778899999999999999988533210 0
Q ss_pred hhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHc-CccEEEEc
Q 017492 199 GLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 253 (370)
Q Consensus 199 ~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~a-G~d~I~vs 253 (370)
.....+|+.++++++.+++||+.=| +.+.++++...+. |+|+|.++
T Consensus 166 ---------~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMig 213 (309)
T PF01207_consen 166 ---------YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIG 213 (309)
T ss_dssp ---------CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEES
T ss_pred ---------CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEc
Confidence 1124589999999999999999876 6899999988876 99999884
No 318
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=95.73 E-value=0.077 Score=49.31 Aligned_cols=74 Identities=27% Similarity=0.368 Sum_probs=58.6
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.+.|+.-.+.|+..+.+----| ...+++-..+.+.+|.+.+ ++||=..||||+-+++.+.+.+|++-|.+|+..
T Consensus 34 ~~~a~~~~~~Ga~~lHlVDLdg-A~~g~~~n~~~i~~i~~~~--~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a 107 (241)
T COG0106 34 LEVAKKWSDQGAEWLHLVDLDG-AKAGGPRNLEAIKEILEAT--DVPVQVGGGIRSLEDVEALLDAGVARVIIGTAA 107 (241)
T ss_pred HHHHHHHHHcCCcEEEEeeccc-cccCCcccHHHHHHHHHhC--CCCEEeeCCcCCHHHHHHHHHCCCCEEEEecce
Confidence 3567888889999987642111 0123455678899999887 899999999999999999999999999999943
No 319
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.72 E-value=0.2 Score=54.63 Aligned_cols=80 Identities=14% Similarity=0.147 Sum_probs=56.9
Q ss_pred cCCHHHHHHHH----Hc---CccEEEEccCCccC-CCCc--cchHHHHHHHHHHcc-CCCcEEEecCCCCHHHHHHHHHh
Q 017492 233 VLTAEDARIAV----QA---GAAGIIVSNHGARQ-LDYV--PATIMALEEVVKATQ-GRIPVFLDGGVRRGTDVFKALAL 301 (370)
Q Consensus 233 v~~~~~a~~a~----~a---G~d~I~vs~~gg~~-~~~~--~~~~~~l~~i~~~~~-~~ipvi~~GGI~~~~dv~kalal 301 (370)
+-+.+++..+. .. |+|+|.++--..+. .... +..++.+.++++.+. ..+||++-||| +.+++.++++.
T Consensus 108 ~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~ 186 (755)
T PRK09517 108 IETLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAAT 186 (755)
T ss_pred CCCHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHc
Confidence 35667665432 23 59999987433332 1121 235677888877662 13999999999 77999999999
Q ss_pred CCCEEEEcHHHH
Q 017492 302 GASGIFIGRPVV 313 (370)
Q Consensus 302 GAd~V~igr~~l 313 (370)
||++|.+-+.++
T Consensus 187 Ga~giAvisai~ 198 (755)
T PRK09517 187 GIDGLCVVSAIM 198 (755)
T ss_pred CCCEEEEehHhh
Confidence 999999999986
No 320
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=95.64 E-value=0.25 Score=45.12 Aligned_cols=95 Identities=19% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEec-CCH---HHHHHHHHcCccEEEEccC-----CccCCCCccchHHHHHHHHHHccC
Q 017492 209 DRSLSWKDVKWLQTITKLPILVKGV-LTA---EDARIAVQAGAAGIIVSNH-----GARQLDYVPATIMALEEVVKATQG 279 (370)
Q Consensus 209 d~~~~~~~i~~ir~~~~~Pv~vK~v-~~~---~~a~~a~~aG~d~I~vs~~-----gg~~~~~~~~~~~~l~~i~~~~~~ 279 (370)
+.+.+.+.++++++..++||+ |-+ ... .........-+|.+.+... ||+ +..-.|..+... ..
T Consensus 82 HG~e~~~~~~~l~~~~~~~v~-kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt---G~~fDW~~l~~~----~~ 153 (208)
T COG0135 82 HGDEDPEYIDQLKEELGVPVI-KAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT---GQTFDWNLLPKL----RL 153 (208)
T ss_pred CCCCCHHHHHHHHhhcCCceE-EEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC---CcEECHHHhccc----cc
Confidence 445678899999998888987 543 322 2344455667899999874 443 334466776654 12
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCC-CEEEEcHHH
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGA-SGIFIGRPV 312 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGA-d~V~igr~~ 312 (370)
..|++..||| +++++.+|++++. .+|=+.|.+
T Consensus 154 ~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSGV 186 (208)
T COG0135 154 SKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSGV 186 (208)
T ss_pred cCCEEEECCC-CHHHHHHHHHhcCCceEEecccc
Confidence 6789999999 6799999999986 888887743
No 321
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=95.62 E-value=0.055 Score=55.96 Aligned_cols=252 Identities=18% Similarity=0.235 Sum_probs=133.9
Q ss_pred hcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|..- ...+++|++|.+- ...++.||+-|||...+ |..||.+.+++|...+++ .++++|+..+
T Consensus 19 t~ddv~l~p~~~~~~~~~v~~~t~l~~~~~l~~Pii~a~M~~vt------~~~ma~a~a~~GglGvi~--~~~~~e~~~~ 90 (495)
T PTZ00314 19 TYDDVILLPGYIDFSRDDVDLSTRLTRNIRLKIPIVSSPMDTVT------EHKMAIAMALMGGIGVIH--NNCSIEEQVE 90 (495)
T ss_pred CccceEecccccccccccccccccccCCcccCCceeecCccccc------cHHHHHHHHHCCCeEEec--CCCCHHHHHH
Confidence 699999999754 2446788888775 35788999999997664 678999999999998885 3577776543
Q ss_pred cCC------CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC-----CCCcchhHHhhhhcCCCCcccccccccc-
Q 017492 120 TGP------GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-----PRLGRREADIKNRFTLPPFLTLKNFQGL- 187 (370)
Q Consensus 120 ~~~------~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~-----p~~g~r~~d~~~~~~~p~~~~~~~~~~~- 187 (370)
... .........-.......+.++...+.++..+.|+-+- .+.-...+|++..- ........+-..
T Consensus 91 ~v~kvk~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diMt~~ 168 (495)
T PTZ00314 91 EVRKVKRFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVMTPR 168 (495)
T ss_pred HHhhccccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhhCCc
Confidence 211 1001111111122334445556667787777664321 01001223433100 000000000000
Q ss_pred -ccCcccc-ccchhhHHHhhhc-------CC--CC----ccHHHHHHHHHh------cCCcEEEEec--CC---HHHHHH
Q 017492 188 -DLGKMDE-ANDSGLAAYVAGQ-------ID--RS----LSWKDVKWLQTI------TKLPILVKGV--LT---AEDARI 241 (370)
Q Consensus 188 -~~~~~~~-~~~~~~~~~~~~~-------~d--~~----~~~~~i~~ir~~------~~~Pv~vK~v--~~---~~~a~~ 241 (370)
....... ....-....+... .| .. .+.+++...... -...+.|... .+ .+.++.
T Consensus 169 ~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~ 248 (495)
T PTZ00314 169 EKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYPNASLDSNGQLLVGAAISTRPEDIERAAA 248 (495)
T ss_pred CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCchhhhccCCCEEEEEEECCCHHHHHHHHH
Confidence 0000000 0000000000000 00 00 122222222110 0122333222 22 356888
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.++|+|.|.+....|++ ...++.+.++++..+ +++|++ |.+.|.+++..++.+|||++-+|
T Consensus 249 l~~ag~d~i~id~a~G~s----~~~~~~i~~ik~~~~-~~~v~a-G~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 249 LIEAGVDVLVVDSSQGNS----IYQIDMIKKLKSNYP-HVDIIA-GNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHCCCCEEEEecCCCCc----hHHHHHHHHHHhhCC-CceEEE-CCcCCHHHHHHHHHcCCCEEEEC
Confidence 999999999997533321 224678888887653 688887 89999999999999999999754
No 322
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=95.61 E-value=0.61 Score=45.78 Aligned_cols=127 Identities=23% Similarity=0.353 Sum_probs=74.0
Q ss_pred cHHHHHHHHHhcCCcEEEEecC--CHHH----HHHHHHcCccEEEEccCCccCCC-Cccc--hHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGVL--TAED----ARIAVQAGAAGIIVSNHGARQLD-YVPA--TIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~--~~~~----a~~a~~aG~d~I~vs~~gg~~~~-~~~~--~~~~l~~i~~~~~~~ipv 283 (370)
+...++++- .+++||++|..+ +.++ ++.+...|-+-+.+.-.|.+... .... .+..++.+++.. .+||
T Consensus 189 N~~LL~~va-~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~--~lPV 265 (335)
T PRK08673 189 NFDLLKEVG-KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLT--HLPV 265 (335)
T ss_pred CHHHHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhc--CCCE
Confidence 344566654 469999999753 5666 34555678877777655655442 2222 334566666554 6899
Q ss_pred EEecCCCCH------HHHHHHHHhCCCEEEEcHHHHH--HHHhcCHHH-HHHHHHHHHHHHHHHHHHcC
Q 017492 284 FLDGGVRRG------TDVFKALALGASGIFIGRPVVY--SLAAEGEKG-VRRVLEMLREEFELAMALSG 343 (370)
Q Consensus 284 i~~GGI~~~------~dv~kalalGAd~V~igr~~l~--~~~~~G~~~-v~~~l~~l~~el~~~m~~~G 343 (370)
+++-.=..| .-...|+++|||++++-.-+-- ++ +.|... --+-++.|.++++..-...|
T Consensus 266 i~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~al-sD~~~sl~p~e~~~lv~~i~~i~~~~g 333 (335)
T PRK08673 266 IVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKAL-SDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred EEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCC-CcchhcCCHHHHHHHHHHHHHHHHHhC
Confidence 887544444 3456688899999999874321 11 222211 01234555566665555544
No 323
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.61 E-value=0.05 Score=55.60 Aligned_cols=252 Identities=19% Similarity=0.239 Sum_probs=131.3
Q ss_pred hcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhc
Q 017492 42 AFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVAS 119 (370)
Q Consensus 42 ~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~ 119 (370)
.||++.|+|..- ...+++|++|.+- +.+++.||+-|||...+ |..++.+.++.|-..++.. ++++|+..+
T Consensus 3 t~ddv~l~p~~~~~~~~~~~~~~~~~~~~~l~~p~~s~~mdtvT------e~ema~~ma~~gg~GvI~~--n~~~e~q~~ 74 (450)
T TIGR01302 3 TFDDVLLLPGFIDVEPDDVDLSTRITRNIKLNIPILSSPMDTVT------ESRMAIAMAREGGIGVIHR--NMSIEEQAE 74 (450)
T ss_pred CccceEecccccccCccccccccccccccCcCCCeeecCCCccC------HHHHHHHHHhcCCCceeec--CCCHHHHHH
Confidence 699999999754 2346789999886 68899999999997654 5567777777776556643 355553321
Q ss_pred ----cC--CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC-----CCCcchhHHhhhhcCCCCccccccccc-c
Q 017492 120 ----TG--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-----PRLGRREADIKNRFTLPPFLTLKNFQG-L 187 (370)
Q Consensus 120 ----~~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~-----p~~g~r~~d~~~~~~~p~~~~~~~~~~-~ 187 (370)
.. .....-++..-.......+.++...+.++..+.|.=+. +..--..+|+..... + ......+.. .
T Consensus 75 ~V~~Vk~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~-~-~~~V~dvm~~~ 152 (450)
T TIGR01302 75 QVKRVKRAENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD-K-GKPVSEVMTRE 152 (450)
T ss_pred HHhhhccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc-C-CCCHHHhhCCC
Confidence 11 11111111111223344456666677788777664221 000011233321100 0 000000000 0
Q ss_pred ccCcccc-ccchhhHHHhhhc-------CC--C----CccHHHHHHHHHh------cCCcEEEEec--C---CHHHHHHH
Q 017492 188 DLGKMDE-ANDSGLAAYVAGQ-------ID--R----SLSWKDVKWLQTI------TKLPILVKGV--L---TAEDARIA 242 (370)
Q Consensus 188 ~~~~~~~-~~~~~~~~~~~~~-------~d--~----~~~~~~i~~ir~~------~~~Pv~vK~v--~---~~~~a~~a 242 (370)
....... ....-+...+... .| . -.+.+++.+..+. -+.-++|.+. . +.+.++.+
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L 232 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKFPHASKDENGRLIVGAAVGTREFDKERAEAL 232 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccCCcceEeCCCCEEEEEEecCchhHHHHHHHH
Confidence 0000000 0000000000000 00 0 0123332222111 0122333322 1 24668889
Q ss_pred HHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 243 VQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 243 ~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.++|+|.|.|....|+ ....++.+.++++.. .++||++ |++-+.+++..++.+|||+|.+|
T Consensus 233 ~~aG~d~I~vd~a~g~----~~~~~~~i~~i~~~~-~~~~vi~-G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 233 VKAGVDVIVIDSSHGH----SIYVIDSIKEIKKTY-PDLDIIA-GNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHhCCCEEEEECCCCc----HhHHHHHHHHHHHhC-CCCCEEE-EeCCCHHHHHHHHHhCCCEEEEC
Confidence 9999999999763332 134556778887764 3789988 99999999999999999999766
No 324
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.58 E-value=0.16 Score=47.75 Aligned_cols=87 Identities=26% Similarity=0.347 Sum_probs=59.3
Q ss_pred HHHHHHhcCCcEEEEec-----------CCH----HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCC
Q 017492 217 VKWLQTITKLPILVKGV-----------LTA----EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRI 281 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v-----------~~~----~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~i 281 (370)
+.+-...+++|+++-.. .++ .-++.+.+.|+|.|.+.-.| ..+...++.+.+ .+
T Consensus 135 v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg---------~~e~F~~vv~~~--~v 203 (265)
T COG1830 135 VVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTG---------DPESFRRVVAAC--GV 203 (265)
T ss_pred HHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCC---------ChHHHHHHHHhC--CC
Confidence 44444557899887432 112 22567899999999985322 226677777777 49
Q ss_pred cEEEecCCCC-HH-HH----HHHHHhCCCEEEEcHHHHH
Q 017492 282 PVFLDGGVRR-GT-DV----FKALALGASGIFIGRPVVY 314 (370)
Q Consensus 282 pvi~~GGI~~-~~-dv----~kalalGAd~V~igr~~l~ 314 (370)
||+.+||=.+ .+ ++ ..++..||.++.+||-++.
T Consensus 204 pVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ 242 (265)
T COG1830 204 PVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQ 242 (265)
T ss_pred CEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhc
Confidence 9999999987 22 22 2356689999999997653
No 325
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=95.56 E-value=2.1 Score=40.85 Aligned_cols=182 Identities=16% Similarity=0.132 Sum_probs=102.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+-..+ ++ +.+.+.+|.. +... -+.++++- ..+-+.
T Consensus 3 ~~a~~TPf~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~-~~s~~~ 81 (285)
T TIGR00674 3 ITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG-SNATEE 81 (285)
T ss_pred cCceeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC-CccHHH
Confidence 35566776444334444445677777778866544 22 2345665532 2222 24555543 234566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
+.++.+.|++.|++++.+. .|... + .+.+-..+..
T Consensus 82 ~i~~a~~a~~~Gad~v~v~--pP~y~------------~-------------------------------~~~~~i~~~~ 116 (285)
T TIGR00674 82 AISLTKFAEDVGADGFLVV--TPYYN------------K-------------------------------PTQEGLYQHF 116 (285)
T ss_pred HHHHHHHHHHcCCCEEEEc--CCcCC------------C-------------------------------CCHHHHHHHH
Confidence 7788889999999999885 23210 0 0001123456
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.. .+++..+++.+.. +-+|.-+. .....+.++.+..+++..|+. |
T Consensus 117 ~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~~~~v~giK~s~----------~d~~~~~~l~~~~~~~~~v~~-G-- 183 (285)
T TIGR00674 117 KAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAEEPNIVAIKEAT----------GNLERISEIKAIAPDDFVVLS-G-- 183 (285)
T ss_pred HHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-C--
Confidence 6677777899887653 4667777777643 22222211 123445555555444555444 2
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
...-.+..+.+||++.+.|...+
T Consensus 184 -~d~~~~~~~~~G~~G~i~~~~~~ 206 (285)
T TIGR00674 184 -DDALTLPMMALGGKGVISVTANV 206 (285)
T ss_pred -chHHHHHHHHcCCCEEEehHHHh
Confidence 22456678899999999887654
No 326
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.56 E-value=0.065 Score=50.58 Aligned_cols=167 Identities=22% Similarity=0.270 Sum_probs=90.7
Q ss_pred cCeeecCceeeccc---c----cccccCChhhHHHHHHHHHc--CCceeecCCCCC----CHHHHhccC-C-CceEEEEe
Q 017492 66 LGFKISMPIMIAPT---A----MQKMAHPEGEYATARAASAA--GTIMTLSSWSTS----SVEEVASTG-P-GIRFFQLY 130 (370)
Q Consensus 66 ~g~~l~~Pi~iapm---~----~~~~~~~~~e~~la~aa~~~--G~~~~~s~~~~~----~~eei~~~~-~-~~~~~Qly 130 (370)
+|.++|-|+.=.|+ + ...-...+.-..+.+..++. ++|+++=++.+. .+|+..+.. . +...+ |-
T Consensus 50 LGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGl-iv 128 (265)
T COG0159 50 LGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGL-LV 128 (265)
T ss_pred ecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEE-Ee
Confidence 58888888877775 1 11111223345677777754 466776444332 344422111 1 11121 22
Q ss_pred ecCChHHHHHHHHHHHHcCCcEEEEecCCCCCc-chhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 131 VYKDRNVVAQLVRRAERAGFKAIALTVDTPRLG-RREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 131 ~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g-~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
+.-..+...++.+.+++.|.+-|.+. +|... +|...+...- .++.. +.+. ...-|. ....
T Consensus 129 pDLP~ee~~~~~~~~~~~gi~~I~lv--aPtt~~~rl~~i~~~a---~GFiY--~vs~-------~GvTG~-----~~~~ 189 (265)
T COG0159 129 PDLPPEESDELLKAAEKHGIDPIFLV--APTTPDERLKKIAEAA---SGFIY--YVSR-------MGVTGA-----RNPV 189 (265)
T ss_pred CCCChHHHHHHHHHHHHcCCcEEEEe--CCCCCHHHHHHHHHhC---CCcEE--EEec-------ccccCC-----Cccc
Confidence 33345666677777888888877653 45433 4444433211 01100 0000 000000 0001
Q ss_pred CCccHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 210 RSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.....+.++++|+.+++|+.+. |+.++++++.+.++ +|+++|+
T Consensus 190 ~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 190 SADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA-ADGVIVG 233 (265)
T ss_pred chhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh-CCeEEEc
Confidence 1124567999999999999998 47899999999999 9999994
No 327
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.54 E-value=0.06 Score=55.76 Aligned_cols=253 Identities=17% Similarity=0.180 Sum_probs=131.5
Q ss_pred hhcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|..- ...+++|++|.+- ...+..||+-|||...+ +-.+|.+.++.|...++.. +.+.|+..
T Consensus 22 ltfddv~l~p~~~~~~~~~~~~~t~lt~~~~~~~Pivsa~M~~vt------~~~lA~Ama~aGGiGfI~~--~as~E~q~ 93 (505)
T PLN02274 22 YTYDDVIFHPGYIDFPADAVDLSTRLSRNIPLSIPCVSSPMDTVT------ESDMAIAMAALGGIGIVHY--NNTAEEQA 93 (505)
T ss_pred CCccceEecccccCcCCcccccccccccccCcCCCEeccCCcccc------hHHHHHHHHhCCCeEEEcC--CCCHHHHH
Confidence 4799999999754 2346788887664 35677899999997664 6689999999997766763 45565543
Q ss_pred cc----C--CCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecC-----CCCCcchhHHhhhhcCCCCcccccccccc
Q 017492 119 ST----G--PGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVD-----TPRLGRREADIKNRFTLPPFLTLKNFQGL 187 (370)
Q Consensus 119 ~~----~--~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd-----~p~~g~r~~d~~~~~~~p~~~~~~~~~~~ 187 (370)
+. . .....-....-.....+.+.++...+.++..+.|+=+ .++.--..+|++..-. +. .....+-..
T Consensus 94 ~~Irkvk~~~~gmi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~~-~~-~~V~eIMt~ 171 (505)
T PLN02274 94 AIVRKAKSRRVGFVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVND-RE-TKLSEVMTS 171 (505)
T ss_pred HHHHHhhcccccccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhccc-cC-CcHHHHhcc
Confidence 21 1 1000001111122333444556666778877766422 1110012233321000 00 000000000
Q ss_pred c--cCcccc-ccchhhHHHhhh-------cCC--C----CccHHHHHHHHHhc---------CCcEEEEe-c-C---CHH
Q 017492 188 D--LGKMDE-ANDSGLAAYVAG-------QID--R----SLSWKDVKWLQTIT---------KLPILVKG-V-L---TAE 237 (370)
Q Consensus 188 ~--~~~~~~-~~~~~~~~~~~~-------~~d--~----~~~~~~i~~ir~~~---------~~Pv~vK~-v-~---~~~ 237 (370)
. ...... ....-+.+.+.. ..| . -.+.+++.+..+.- ...+.+.- + . ..+
T Consensus 172 ~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~ 251 (505)
T PLN02274 172 DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKE 251 (505)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHH
Confidence 0 000000 000000000000 000 0 11334443333321 11233332 1 1 236
Q ss_pred HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 238 DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
-++.+.++|+|.|.+....|. ....++.+.++++..+ +++|++ |+|.|.+++..++.+|||+|.+|
T Consensus 252 r~~~l~~ag~d~i~iD~~~g~----~~~~~~~i~~ik~~~p-~~~vi~-g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 252 RLEHLVKAGVDVVVLDSSQGD----SIYQLEMIKYIKKTYP-ELDVIG-GNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHcCCCEEEEeCCCCC----cHHHHHHHHHHHHhCC-CCcEEE-ecCCCHHHHHHHHHcCcCEEEEC
Confidence 688999999999999764332 2345678888887652 455554 88999999999999999999775
No 328
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=95.54 E-value=1.7 Score=42.71 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCcc----chHHHHHHHHHHccCCCcEEEecCCCCH-------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 292 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~------------- 292 (370)
.++++|+.-+ +.|+|.+-++. ||-+.....| -.++.|.+|.+.+ +++|+..=||=..+
T Consensus 171 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v-~~vPLVLHGgSG~p~~~~~~~~~~~~~ 249 (347)
T TIGR01521 171 TDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARL-PDTHLVMHGSSSVPQEWLDIINEYGGE 249 (347)
T ss_pred CCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccC-CCCCEEEeCCCCCchHhhHHHHhhccc
Confidence 4778887655 68999999874 5543211012 3567889998876 35999988876554
Q ss_pred ---------HHHHHHHHhCCCEEEEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017492 293 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 346 (370)
Q Consensus 293 ---------~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 346 (370)
+++.+++.+|..-|-+++-+..+... .. ..-.....+.+++.+...|..+|...
T Consensus 250 ~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~~gs~~ 325 (347)
T TIGR01521 250 IKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAAQNPSEFDPRKFLKPTVEAMRDVCIARYEAFGTAG 325 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976544211 00 12234445667788888888888553
No 329
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.51 E-value=2.3 Score=40.30 Aligned_cols=180 Identities=18% Similarity=0.180 Sum_probs=106.8
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ + ++.+.+.+|.. +... -+.++++- ..+.+..
T Consensus 3 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~~ 81 (281)
T cd00408 3 PALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVG-ANSTREA 81 (281)
T ss_pred CCeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecC-CccHHHH
Confidence 5566777544445555556788888888876544 2 23445666532 2222 34455553 2345567
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++++.++++|++++.+. .|... + ...+-..+..+
T Consensus 82 i~~a~~a~~~Gad~v~v~--pP~y~------------~-------------------------------~~~~~~~~~~~ 116 (281)
T cd00408 82 IELARHAEEAGADGVLVV--PPYYN------------K-------------------------------PSQEGIVAHFK 116 (281)
T ss_pred HHHHHHHHHcCCCEEEEC--CCcCC------------C-------------------------------CCHHHHHHHHH
Confidence 788889999999999874 23210 0 00011334566
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.+.+.+++|+++-.. .+++...++.+. .+-+|.-+. .....+.++.+..++++.|+. | -
T Consensus 117 ~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~----------~d~~~~~~~~~~~~~~~~v~~-G-~- 183 (281)
T cd00408 117 AVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSS----------GDLDRLTRLIALLGPDFAVLS-G-D- 183 (281)
T ss_pred HHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEEE-c-c-
Confidence 677778899987643 567777777752 234443321 234455555555544554443 3 2
Q ss_pred CHHHHHHHHHhCCCEEEEcHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~ 312 (370)
...+...+.+|+++.+.|..-
T Consensus 184 -d~~~~~~l~~G~~G~i~~~~n 204 (281)
T cd00408 184 -DDLLLPALALGADGAISGAAN 204 (281)
T ss_pred -hHHHHHHHHcCCCEEEehHHh
Confidence 567888899999999999743
No 330
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.49 E-value=0.12 Score=51.00 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+-+..+.++|+|.|++...-|+ ..-..+.+.++++..+ ++|||+ |.|-|.+-+...+..|||+|-+|
T Consensus 110 ~er~~~L~~agvD~ivID~a~g~----s~~~~~~ik~ik~~~~-~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSAHGH----SEHVIDMIKKIKKKFP-DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-SSTT----SHHHHHHHHHHHHHST-TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHcCCCEEEccccCcc----HHHHHHHHHHHHHhCC-CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 46688899999999999753222 1234567788877764 788886 88999999988888999999888
No 331
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=95.48 E-value=0.057 Score=49.39 Aligned_cols=71 Identities=24% Similarity=0.280 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.+.|+...++|+++|.+....+. . ....+.+..+++.+ ++||+.-|+|++..++..++.+|||+|.++.+.
T Consensus 34 ~~~A~~~~~~GA~~l~v~~~~~~-~---~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLTEPKY-F---QGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAA 104 (217)
T ss_pred HHHHHHHHHcCCCEEEEEeCccc-c---CCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeecc
Confidence 36688999999999988542111 0 12345666676665 799999999999999999999999999988754
No 332
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.44 E-value=0.75 Score=44.51 Aligned_cols=127 Identities=16% Similarity=0.183 Sum_probs=86.5
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
..+++. ..+.+...+.++++.+.|++++-+.++.
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~Gf~~iKik~g~--------------------------------------------- 159 (316)
T cd03319 126 TDYTIS-IDTPEAMAAAAKKAAKRGFPLLKIKLGG--------------------------------------------- 159 (316)
T ss_pred eEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEEeCC---------------------------------------------
Confidence 334554 3566767777777888899998876531
Q ss_pred hhcCCCCccHHHHHHHHHhcC-CcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc
Q 017492 205 AGQIDRSLSWKDVKWLQTITK-LPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT 277 (370)
Q Consensus 205 ~~~~d~~~~~~~i~~ir~~~~-~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~ 277 (370)
+++...+.++.+|+.++ .++.++.- .+.++| +.+.+.+++.|.= ...+..++.+.++++..
T Consensus 160 ----~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iEe--------P~~~~d~~~~~~L~~~~ 227 (316)
T cd03319 160 ----DLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIEQ--------PVPAGDDDGLAYLRDKS 227 (316)
T ss_pred ----ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC--------CCCCCCHHHHHHHHhcC
Confidence 11124567888888774 67777753 344444 4455677777631 01133567788887765
Q ss_pred cCCCcEEEecCCCCHHHHHHHHHhC-CCEEEEcHH
Q 017492 278 QGRIPVFLDGGVRRGTDVFKALALG-ASGIFIGRP 311 (370)
Q Consensus 278 ~~~ipvi~~GGI~~~~dv~kalalG-Ad~V~igr~ 311 (370)
++||++++.+.+..++.+++..| +|.|++--.
T Consensus 228 --~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~ 260 (316)
T cd03319 228 --PLPIMADESCFSAADAARLAGGGAYDGINIKLM 260 (316)
T ss_pred --CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 79999999999999999999965 888888643
No 333
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.38 E-value=2.7 Score=40.35 Aligned_cols=183 Identities=14% Similarity=0.087 Sum_probs=105.8
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ ++ +.+.+.||.. +... -+.++++- .+-+.
T Consensus 10 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ 87 (296)
T TIGR03249 10 LSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSD 87 (296)
T ss_pred EEeeeCCcCCCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHH
Confidence 46667777544434445556788888888866544 32 3456666532 2222 35677763 34667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++++.|++.|++++.+. .|.. . +. ...-..+..
T Consensus 88 ai~~a~~a~~~Gadav~~~--pP~y-----------~-~~-------------------------------s~~~i~~~f 122 (296)
T TIGR03249 88 AIEIARLAEKAGADGYLLL--PPYL-----------I-NG-------------------------------EQEGLYAHV 122 (296)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCC-----------C-CC-------------------------------CHHHHHHHH
Confidence 7778888999999999874 2321 0 00 000123345
Q ss_pred HHHHHhcCCcEEEEe----cCCHHHHHHHHH-c-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 218 KWLQTITKLPILVKG----VLTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~----v~~~~~a~~a~~-a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.+.+.+++||++=. -++++...++.+ . .+-+|.-+. ..+..+.++.+..+++..|+...+. .
T Consensus 123 ~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~~nvvgiKds~----------~d~~~~~~~~~~~~~~~~v~~G~~~-~ 191 (296)
T TIGR03249 123 EAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFKDGI----------GDMEQMIEITQRLGDRLGYLGGMPT-A 191 (296)
T ss_pred HHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEEeCCCc-c
Confidence 666667789988653 256777777765 2 455555432 2344555555554444444432111 1
Q ss_pred HHHHHHHHHhCCCEEEEcHHH
Q 017492 292 GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~ 312 (370)
...++..+.+||++++.|..-
T Consensus 192 d~~~~~~~~~Ga~G~is~~~n 212 (296)
T TIGR03249 192 EVTAPAYLPLGVTSYSSAIFN 212 (296)
T ss_pred hhhHHHHHhCCCCEEEecHHH
Confidence 244567788999999988753
No 334
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.35 E-value=2.4 Score=40.33 Aligned_cols=182 Identities=19% Similarity=0.180 Sum_probs=104.3
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-+.+.|+...+ ++ +.+.+.+|.. +... -+.++++- ..+.+.
T Consensus 5 ~~~~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~~~~~ 83 (284)
T cd00950 5 ITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG-SNNTAE 83 (284)
T ss_pred eeeeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC-CccHHH
Confidence 35667777544444555556777888888875443 22 2345666532 2222 24555553 235667
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++++.|+++|++++.+. .|.. + +. ..+-..+..
T Consensus 84 ~~~~a~~a~~~G~d~v~~~--~P~~----------~--~~-------------------------------~~~~l~~~~ 118 (284)
T cd00950 84 AIELTKRAEKAGADAALVV--TPYY----------N--KP-------------------------------SQEGLYAHF 118 (284)
T ss_pred HHHHHHHHHHcCCCEEEEc--cccc----------C--CC-------------------------------CHHHHHHHH
Confidence 7888899999999999874 2321 0 00 001123456
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.|.+.+++||++=.. ++++...++.+. .+-+|.-+. .....+.++.+..++++.|+. |
T Consensus 119 ~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~----------~~~~~~~~~~~~~~~~~~v~~-G-- 185 (284)
T cd00950 119 KAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEAT----------GDLDRVSELIALCPDDFAVLS-G-- 185 (284)
T ss_pred HHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECC----------CCHHHHHHHHHhCCCCeEEEe-C--
Confidence 6666667889886543 566777766653 233443321 123344455555544554443 3
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l 313 (370)
....+...+.+|+++++.|..-+
T Consensus 186 -~d~~~~~~~~~G~~G~~s~~~n~ 208 (284)
T cd00950 186 -DDALTLPFLALGGVGVISVAANV 208 (284)
T ss_pred -ChHhHHHHHHCCCCEEEehHHHh
Confidence 22456677889999999888643
No 335
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=95.32 E-value=0.36 Score=45.68 Aligned_cols=41 Identities=32% Similarity=0.322 Sum_probs=34.8
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++.+|+.++.||++.. +.++++++.+.+. +|+++|..
T Consensus 188 ~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 188 LAELVARLKAHTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHHhcCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 34579999998899999975 5799999999986 99999954
No 336
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=95.26 E-value=2.1 Score=40.37 Aligned_cols=97 Identities=11% Similarity=0.014 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEcc-----CCccCC-CC-----ccchHHHHHHHHHHc---cCCC
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSN-----HGARQL-DY-----VPATIMALEEVVKAT---QGRI 281 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~-----~gg~~~-~~-----~~~~~~~l~~i~~~~---~~~i 281 (370)
.++.+.+ -++++-+=.+.+.+.+..+.++|++.|...- +|..++ +. +-+.+..+.++.+.. +.+.
T Consensus 131 A~~~L~~-~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~t 209 (252)
T cd00439 131 AIKDLIA-AGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKKQ 209 (252)
T ss_pred HHHHHHH-CCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCCC
Confidence 4455544 3889988889999999999999999998742 122111 01 114455555555443 3356
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHH
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSL 316 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~ 316 (370)
.|++.+ +++..++.+.+ |+|.|-+.-..+..+
T Consensus 210 kiL~AS-~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 210 RVLWAS-FSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred eEEEEe-eCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 776654 99999997655 999999998877654
No 337
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=95.19 E-value=0.39 Score=44.20 Aligned_cols=122 Identities=18% Similarity=0.302 Sum_probs=80.9
Q ss_pred eecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCC
Q 017492 130 YVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQID 209 (370)
Q Consensus 130 y~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 209 (370)
|...+.+.+.+-++.++++|++.+++.+-. .|
T Consensus 67 Y~~~E~~iM~~DI~~~~~lG~~GVV~G~lt------------------------------------------------~d 98 (241)
T COG3142 67 YSDDELEIMLEDIRLARELGVQGVVLGALT------------------------------------------------AD 98 (241)
T ss_pred cChHHHHHHHHHHHHHHHcCCCcEEEeeec------------------------------------------------CC
Confidence 444456788888999999999998864311 13
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcE
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipv 283 (370)
...+.+.++++.+.. +++|.+-.- .++.. ...+++.|+.-|-.| ||. ....-....|.++.+...+++.|
T Consensus 99 g~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs--Gg~--~sa~eg~~~l~~li~~a~gri~I 174 (241)
T COG3142 99 GNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTS--GGK--ASALEGLDLLKRLIEQAKGRIII 174 (241)
T ss_pred CccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC--CCc--CchhhhHHHHHHHHHHhcCCEEE
Confidence 345666777777765 677766542 44544 578999999998774 443 22233344555555555578889
Q ss_pred EEecCCCCHHHHHHH-HHhCCC
Q 017492 284 FLDGGVRRGTDVFKA-LALGAS 304 (370)
Q Consensus 284 i~~GGI~~~~dv~ka-lalGAd 304 (370)
++.|||+. +.+... ..+|+.
T Consensus 175 m~GaGV~~-~N~~~l~~~tg~~ 195 (241)
T COG3142 175 MAGAGVRA-ENIAELVLLTGVT 195 (241)
T ss_pred EeCCCCCH-HHHHHHHHhcCch
Confidence 99889865 667665 457764
No 338
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=95.18 E-value=0.11 Score=47.94 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=32.6
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEE
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~v 252 (370)
+...++.|++..++||+|- |+-++.+|..++|.|+|+|-+
T Consensus 163 n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 163 NPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp THHHHHHHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 5667899999999999985 578999999999999999977
No 339
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=95.18 E-value=0.1 Score=48.19 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH--hCCCEEEEcHHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA--LGASGIFIGRPVV 313 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala--lGAd~V~igr~~l 313 (370)
.+.|+...+.|+|.+.+..--+. .+.+...+.+.++.+. +|+.+.||||+.+|+.+++. .||+-|.+|+..+
T Consensus 39 ~~~a~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~----~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 39 DDAAKVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKR----VELIADCGVRSPEDLETLPFTLEFASRVVVATETL 112 (221)
T ss_pred HHHHHHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhh----CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence 35677788999999987543221 1345567788888774 58999999999999988865 2699999999754
No 340
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=95.11 E-value=0.32 Score=46.41 Aligned_cols=155 Identities=25% Similarity=0.275 Sum_probs=87.0
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCC----------C---CHHH----HhccCCCceEEEEeecC
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWST----------S---SVEE----VASTGPGIRFFQLYVYK 133 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~----------~---~~ee----i~~~~~~~~~~Qly~~~ 133 (370)
..|++++ +.+. .++.-...++.+.+.|+.++-=+++. . .+.+ +.+...-|.++.+-...
T Consensus 98 ~~pvi~s-i~g~---~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIAS-VGGS---SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEE-eccC---CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 4576654 3332 22222467888888887644311110 0 1222 23332345677765555
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+.+.++++.++++|++++.++-.... +..+... ..|. .. ....+ ++........
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~~~~~---~~~~~~~--~~~~---~~------------~~~~g----~sg~~~~~~~ 229 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAINTISG---RVVDLKT--VGPG---PK------------RGTGG----LSGAPIRPLA 229 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCc---cceeccc--Cccc---cC------------CCCCc----cCcHHHHHHH
Confidence 6667888999999999999988632211 0000000 0000 00 00000 0000011236
Q ss_pred HHHHHHHHHhc--CCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 214 WKDVKWLQTIT--KLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
++.++++++.+ ++||+.-+ +.+.+++..++.+|+|+|.++
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg 272 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHheEc
Confidence 78899999988 89987654 688999999999999999884
No 341
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=95.11 E-value=3.7 Score=40.27 Aligned_cols=230 Identities=17% Similarity=0.184 Sum_probs=115.7
Q ss_pred ceeecccccccccCChhhH----HHHHHHHHcCCceeecCCCCCCHHHHhccC-CC-ce-----E-----EEEe--ecCC
Q 017492 73 PIMIAPTAMQKMAHPEGEY----ATARAASAAGTIMTLSSWSTSSVEEVASTG-PG-IR-----F-----FQLY--VYKD 134 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~----~la~aa~~~G~~~~~s~~~~~~~eei~~~~-~~-~~-----~-----~Qly--~~~d 134 (370)
|++||=+|.. | +|++ .+.++|+++|+..+= +-+...+++.... +. .+ | +.+| ..-+
T Consensus 1 ~~iIAEig~N---H-~Gdl~~A~~lI~~A~~aGadaVK--fQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 74 (329)
T TIGR03569 1 TFIIAEAGVN---H-NGSLELAKKLVDAAAEAGADAVK--FQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELS 74 (329)
T ss_pred CEEEEEeCCC---c-cCcHHHHHHHHHHHHHhCCCEEE--eeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCC
Confidence 6788887654 3 2443 688899999976432 1123445443211 11 11 1 1111 0123
Q ss_pred hHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC-cc
Q 017492 135 RNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS-LS 213 (370)
Q Consensus 135 ~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 213 (370)
.+....+.+.+++.|...+.=-+| .+.-|+-..+.+|. +. + ...+ ..
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd-----~~svd~l~~~~v~~-~K-----------------------I---aS~~~~n 122 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFD-----LESADFLEDLGVPR-FK-----------------------I---PSGEITN 122 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCC-----HHHHHHHHhcCCCE-EE-----------------------E---CcccccC
Confidence 456677777888888876642222 12222222222110 00 0 0111 25
Q ss_pred HHHHHHHHHhcCCcEEEEec-CCHHHHH----HHHHcCcc---EEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 214 WKDVKWLQTITKLPILVKGV-LTAEDAR----IAVQAGAA---GIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v-~~~~~a~----~a~~aG~d---~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
+..|+.+.+ +++||+++.. .+.++.. .+.+.|.+ .+.+.-...+.-......+..++.+++.. .+||..
T Consensus 123 ~pLL~~~A~-~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f--~~pVG~ 199 (329)
T TIGR03569 123 APLLKKIAR-FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF--DLPVGY 199 (329)
T ss_pred HHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh--CCCEEE
Confidence 677888766 5999999965 5665543 34457875 33331111110001122445666666665 689988
Q ss_pred ecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHH----HHHHHHHHHHHHHHHHHcCCC
Q 017492 286 DGGVRRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGV----RRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 286 ~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v----~~~l~~l~~el~~~m~~~G~~ 345 (370)
++=-..-.-...|+++||+ +|=+-|-..-...|.+.- ..-+..|.++++.+-..+|..
T Consensus 200 SdHt~G~~~~~aAvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~ 261 (329)
T TIGR03569 200 SDHTLGIEAPIAAVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDG 261 (329)
T ss_pred CCCCccHHHHHHHHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCC
Confidence 7522112334557789999 444433222122232210 123566777778777777753
No 342
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.07 E-value=0.14 Score=48.06 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=55.8
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+-|+...++||++|.|-.-+. +-...++.|..+++.+ ++||+.-..|-+..++.++..+|||+|.+=-.++
T Consensus 65 ~~A~~y~~~GA~aISVlTe~~----~F~Gs~~~l~~v~~~v--~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L 135 (247)
T PRK13957 65 QIAKTYETLGASAISVLTDQS----YFGGSLEDLKSVSSEL--KIPVLRKDFILDEIQIREARAFGASAILLIVRIL 135 (247)
T ss_pred HHHHHHHHCCCcEEEEEcCCC----cCCCCHHHHHHHHHhc--CCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhC
Confidence 457888999999998865321 1112567888888877 8999999999999999999999999997655443
No 343
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=95.06 E-value=0.54 Score=42.46 Aligned_cols=101 Identities=27% Similarity=0.368 Sum_probs=67.0
Q ss_pred cHHHHHHHHHh-cCCcEEEEecCCH-------HHHHHHHHcCccEEEEcc---------------CCcc--------C--
Q 017492 213 SWKDVKWLQTI-TKLPILVKGVLTA-------EDARIAVQAGAAGIIVSN---------------HGAR--------Q-- 259 (370)
Q Consensus 213 ~~~~i~~ir~~-~~~Pv~vK~v~~~-------~~a~~a~~aG~d~I~vs~---------------~gg~--------~-- 259 (370)
.++++++.|.+ +.+||++-+..++ ...+.+.++|+.++++-. ||-. .
T Consensus 82 i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtd 161 (268)
T KOG4175|consen 82 IIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTD 161 (268)
T ss_pred HHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChH
Confidence 56778888887 6899998886443 346778889999988742 1110 0
Q ss_pred ---------CC------------CccchH-H----HHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 260 ---------LD------------YVPATI-M----ALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 260 ---------~~------------~~~~~~-~----~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
-| +...+. + .+.+++++. ++.|+-+.-||.+++++-..=.. ||+|.+|+.++
T Consensus 162 eRmell~~~adsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t-~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv 239 (268)
T KOG4175|consen 162 ERMELLVEAADSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKAT-GDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHhhcceEEEEEeccccccHHHHHHHHHHHHHHHHHhc-CCCceeEeeccCCHHHHHhhhhh-ccceEecHHHH
Confidence 00 111111 2 344444443 47899999999999998554333 99999999987
Q ss_pred HH
Q 017492 314 YS 315 (370)
Q Consensus 314 ~~ 315 (370)
.-
T Consensus 240 ~l 241 (268)
T KOG4175|consen 240 KL 241 (268)
T ss_pred HH
Confidence 64
No 344
>PLN02417 dihydrodipicolinate synthase
Probab=95.05 E-value=0.16 Score=48.62 Aligned_cols=91 Identities=19% Similarity=0.294 Sum_probs=57.3
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+.+.|+++|.+.++-|-...-... -.+.+..+++.+.+++||++.=|=.+-.|+++ |-.+|||+|++-.|+++
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~ 108 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYG 108 (280)
T ss_pred HHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccC
Confidence 45678899999997764421111111 22345555666667899987666555566655 34689999999999875
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~ 333 (370)
. ..++++.++++.+.+
T Consensus 109 ~---~~~~~i~~~f~~va~ 124 (280)
T PLN02417 109 K---TSQEGLIKHFETVLD 124 (280)
T ss_pred C---CCHHHHHHHHHHHHh
Confidence 3 245666555555443
No 345
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.04 E-value=0.53 Score=46.00 Aligned_cols=187 Identities=18% Similarity=0.138 Sum_probs=101.8
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCceee---cCCCC------CCH----HH----HhccCCCceEEEEeecC
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL---SSWST------SSV----EE----VASTGPGIRFFQLYVYK 133 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~---s~~~~------~~~----ee----i~~~~~~~~~~Qly~~~ 133 (370)
..|++++= .+. .++.-..+++.+.++|+.+.- |.... ..+ .+ +.+...-|.++.|-+
T Consensus 99 ~~pvi~si-~g~---~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p-- 172 (325)
T cd04739 99 SIPVIASL-NGV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSP-- 172 (325)
T ss_pred CCeEEEEe-CCC---CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCC--
Confidence 56877663 332 233335788888888865442 21100 011 12 223333577877643
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+...+.+.++.++++|+++++++--.+.. .-|+.+ .. + . .... ++........
T Consensus 173 ~~~~~~~~a~~l~~~Gadgi~~~nt~~~~---~id~~~-~~-~---~------------~~~g-------lSG~~~~~~a 225 (325)
T cd04739 173 FFSALAHMAKQLDAAGADGLVLFNRFYQP---DIDLET-LE-V---V------------PNLL-------LSSPAEIRLP 225 (325)
T ss_pred CccCHHHHHHHHHHcCCCeEEEEcCcCCC---Cccccc-cc-e---e------------cCCC-------cCCccchhHH
Confidence 33356778888999999999886322111 001000 00 0 0 0000 1100111246
Q ss_pred HHHHHHHHHhcCCcEEE-EecCCHHHHHHHHHcCccEEEEccCCccCCCCccchH-HHHHHHHHHccCCCcEEEecCCCC
Q 017492 214 WKDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATI-MALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~-~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
++.+.++++..++||+. .++.+.+||.+.+.+|||.|.+... -+..|+..+ ....++.+++ -.-|+.+
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta---~~~~gp~~~~~i~~~L~~~l-------~~~g~~~ 295 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSA---LLRHGPDYIGTLLAGLEAWM-------EEHGYES 295 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehh---hhhcCchHHHHHHHHHHHHH-------HHcCCCC
Confidence 77888888888999874 5689999999999999999998531 011233322 2344444433 2356778
Q ss_pred HHHHHHHHH
Q 017492 292 GTDVFKALA 300 (370)
Q Consensus 292 ~~dv~kala 300 (370)
-.|+.-.++
T Consensus 296 i~e~~G~~~ 304 (325)
T cd04739 296 VQQLRGSMS 304 (325)
T ss_pred HHHHhcccc
Confidence 777765433
No 346
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.01 E-value=0.33 Score=47.60 Aligned_cols=94 Identities=20% Similarity=0.203 Sum_probs=59.7
Q ss_pred HHHHHHHHhcCCcEEEEec-CCHH----HHHHHHHcCccEEEEcc---CCccCCCCcc---chHHHHHHHHHHccCCCcE
Q 017492 215 KDVKWLQTITKLPILVKGV-LTAE----DARIAVQAGAAGIIVSN---HGARQLDYVP---ATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v-~~~~----~a~~a~~aG~d~I~vs~---~gg~~~~~~~---~~~~~l~~i~~~~~~~ipv 283 (370)
+.++.+++..++||+++.. .+.+ .++.+.++|+|+|.+.- ++.....+.. ..++.+..+++.+ ++||
T Consensus 91 ~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV 168 (334)
T PRK07565 91 ELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPV 168 (334)
T ss_pred HHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcE
Confidence 4566676667899999985 3443 36777889999999831 1111111111 1234556666554 6899
Q ss_pred EEe--cCCCCHHHHHHHHH-hCCCEEEEcH
Q 017492 284 FLD--GGVRRGTDVFKALA-LGASGIFIGR 310 (370)
Q Consensus 284 i~~--GGI~~~~dv~kala-lGAd~V~igr 310 (370)
++- +++.+..++++++. .|+|+|.+..
T Consensus 169 ~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n 198 (334)
T PRK07565 169 AVKLSPYFSNLANMAKRLDAAGADGLVLFN 198 (334)
T ss_pred EEEeCCCchhHHHHHHHHHHcCCCeEEEEC
Confidence 876 45556678888765 8999987743
No 347
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.98 E-value=4.1 Score=40.15 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=76.2
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCcc----chHHHHHHHHHHccCCCcEEEecCCC---------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVR--------------- 290 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~--------------- 290 (370)
.++++|+.-+ +.|+|.+-++. ||-+.....| -.++.|.+|.+.+ .++|+..=||=.
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v-~~vPLVLHGgSG~~~~~~~~~~~~g~~ 251 (347)
T PRK09196 173 TDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARL-PNTHLVMHGSSSVPQELLDIINEYGGD 251 (347)
T ss_pred CCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcC-CCCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887655 68999999874 5543211112 3567899998877 258988877543
Q ss_pred -------CHHHHHHHHHhCCCEEEEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017492 291 -------RGTDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 346 (370)
Q Consensus 291 -------~~~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 346 (370)
..+++.|++.+|..-|-+++-+..+... .. ..-.....+.+++.++..|..+|...
T Consensus 252 ~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~i~~~gs~~ 327 (347)
T PRK09196 252 MPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICKARYEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3477899999999999999977554221 00 11233445667888888888888653
No 348
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=94.97 E-value=0.93 Score=40.59 Aligned_cols=88 Identities=25% Similarity=0.210 Sum_probs=59.5
Q ss_pred cHHHHHHHHHh-cCCcEEEEe-cCCH--HHHHHHHHcCccEEEEccCCccCCCCccchHH-HHHHHHHHccCCCcEEEe-
Q 017492 213 SWKDVKWLQTI-TKLPILVKG-VLTA--EDARIAVQAGAAGIIVSNHGARQLDYVPATIM-ALEEVVKATQGRIPVFLD- 286 (370)
Q Consensus 213 ~~~~i~~ir~~-~~~Pv~vK~-v~~~--~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~-~l~~i~~~~~~~ipvi~~- 286 (370)
..+.++++++. .+.|+++=+ +.++ ..++.+.++|+|+|.+.... .+.... .+..+++ . .++++++
T Consensus 40 g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~------~~~~~~~~i~~~~~-~--g~~~~v~~ 110 (202)
T cd04726 40 GMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAA------PLSTIKKAVKAAKK-Y--GKEVQVDL 110 (202)
T ss_pred CHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeC------CHHHHHHHHHHHHH-c--CCeEEEEE
Confidence 35678888887 478887732 2233 35788999999999984321 111122 2333332 2 5777775
Q ss_pred cCCCCHHHHHHHHHhCCCEEEEc
Q 017492 287 GGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 287 GGI~~~~dv~kalalGAd~V~ig 309 (370)
=+..++.++.+++..|+|.|.++
T Consensus 111 ~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 111 IGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred eCCCCHHHHHHHHHCCCCEEEEc
Confidence 78999999999888999999985
No 349
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=94.97 E-value=0.36 Score=46.91 Aligned_cols=87 Identities=9% Similarity=0.269 Sum_probs=60.7
Q ss_pred ceEEEEeec-CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 124 IRFFQLYVY-KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 124 ~~~~Qly~~-~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
|.++-+-.+ .+.+...+.++.++++|+++|.|+-.+.. ++|
T Consensus 135 pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~---------~~y----------------------------- 176 (312)
T PRK10550 135 PVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE---------DGY----------------------------- 176 (312)
T ss_pred ceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc---------cCC-----------------------------
Confidence 566665443 23344678888889999999888632110 000
Q ss_pred HhhhcCCCCccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHH-HcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~-~aG~d~I~vs 253 (370)
.-+...|+.++++++.+++||+.=| +.+++++..++ +.|+|+|.++
T Consensus 177 -----~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiG 224 (312)
T PRK10550 177 -----RAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIG 224 (312)
T ss_pred -----CCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEc
Confidence 0112478999999999999988765 68999999877 5899999884
No 350
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.93 E-value=3.1 Score=39.93 Aligned_cols=153 Identities=16% Similarity=0.109 Sum_probs=83.7
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|..+-.-.+.+...+.+.+++..++|+.++.|. |... |++-. .+. ..+...
T Consensus 79 ~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iE-Dq~~--------------pk~cg--~~~-----------~~~~~~ 130 (285)
T TIGR02320 79 KPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIE-DKLG--------------LKKNS--LFG-----------NDVAQP 130 (285)
T ss_pred CCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEe-ccCC--------------Ccccc--ccC-----------CCCccc
Confidence 3444444444677788888999999999888774 3211 11000 000 000000
Q ss_pred HhhhcCCCCccHHHHHHHHHh-c--CCcEEEEe-----cCCHHH----HHHHHHcCccEEEEccCCccCCCCccchHHHH
Q 017492 203 YVAGQIDRSLSWKDVKWLQTI-T--KLPILVKG-----VLTAED----ARIAVQAGAAGIIVSNHGARQLDYVPATIMAL 270 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~-~--~~Pv~vK~-----v~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l 270 (370)
.+ +.+.-.+.|+..++. . +++|+... ....++ ++...++|||+|.+- + ++.+.+.+
T Consensus 131 l~----s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~--~------~~~~~~ei 198 (285)
T TIGR02320 131 QA----SVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH--S------RKKDPDEI 198 (285)
T ss_pred cc----CHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec--C------CCCCHHHH
Confidence 00 011122345555443 2 46676662 123333 677889999999983 2 12455666
Q ss_pred HHHHHHccC---CCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 271 EEVVKATQG---RIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 271 ~~i~~~~~~---~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
.++.+.++. .+|+++..+-.-...+...-++|.+.|..|..++++
T Consensus 199 ~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 199 LEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred HHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 666666532 568876543111123445556899999999887764
No 351
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.89 E-value=0.25 Score=48.73 Aligned_cols=104 Identities=20% Similarity=0.177 Sum_probs=65.8
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.|-+..+.+.+.++++.++++|++++.++-..+.. . ++ .-+. . .+ ..+..++..
T Consensus 212 ~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~---~-~~----~~~~-~--~~---------~~gg~SG~~- 270 (344)
T PRK05286 212 VPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSR---D-GL----KGLP-N--AD---------EAGGLSGRP- 270 (344)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCcccc---c-cc----cccc-c--CC---------CCCCcccHH-
Confidence 4678887655455567788899999999999887332110 0 00 0000 0 00 000000100
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEE-EEecCCHHHHHHHHHcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.....|+.++++++.+ ++||+ +.++.+.+++...+.+|||.|.++
T Consensus 271 ------~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~ 318 (344)
T PRK05286 271 ------LFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIY 318 (344)
T ss_pred ------HHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHH
Confidence 1123688899999988 78987 566899999999999999999774
No 352
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=94.89 E-value=0.41 Score=45.20 Aligned_cols=42 Identities=33% Similarity=0.441 Sum_probs=36.7
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++++|+.++.||.+.+ +.++++++.+.++|+|+++|+.
T Consensus 186 ~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 56789999999999999976 5679999999999999999853
No 353
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.24 Score=48.35 Aligned_cols=42 Identities=26% Similarity=0.642 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHhcC-CcEEEEe-cCCHHHHHHHHH-cCccEEEEc
Q 017492 212 LSWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-~Pv~vK~-v~~~~~a~~a~~-aG~d~I~vs 253 (370)
..|+.|+++++.++ +||+.-| |.++++|+..++ .|+|+|.+.
T Consensus 184 ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMig 228 (323)
T COG0042 184 ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIG 228 (323)
T ss_pred cCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEc
Confidence 68999999999998 9999876 589999998877 579999884
No 354
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=94.88 E-value=0.18 Score=48.55 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=58.2
Q ss_pred HHHHHHcCccEEEEccCCccCCCCc-cchHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYV-PATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~-~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++-|-...-. .--.+.+..+++.+.+++||++.=|-.+-.|.++ |-++|||+|++..|++
T Consensus 27 v~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~y 106 (294)
T TIGR02313 27 IEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPYY 106 (294)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCccC
Confidence 3556789999999966533211111 1122345556666667899987666556565543 4558999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLREE 334 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~e 334 (370)
+.. .++++.+++..+.+.
T Consensus 107 ~~~---~~~~l~~~f~~ia~a 124 (294)
T TIGR02313 107 NKP---NQEALYDHFAEVADA 124 (294)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 642 355555555555443
No 355
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.84 E-value=0.12 Score=53.46 Aligned_cols=68 Identities=16% Similarity=0.102 Sum_probs=49.9
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+-++.+.++|+|.|+|.+.-|. .....+.+..+++..+..++ +..|-|-+.+++..++.+|||++-+|
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~----~~~~~~~i~~ir~~~~~~~~-V~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGY----SEWQKRTLDWIREKYGDSVK-VGAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccc----cHHHHHHHHHHHHhCCCCce-EEeccccCHHHHHHHHHcCCCEEEEC
Confidence 4578899999999999643221 12235677888776643344 44588999999999999999998774
No 356
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=94.80 E-value=0.37 Score=44.47 Aligned_cols=40 Identities=23% Similarity=0.417 Sum_probs=35.8
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEE
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~v 252 (370)
+...|+-|++..++||+|- |+-++.+|..++|.|+|+|-+
T Consensus 170 n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 170 NPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred CHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 5678899999999999995 678999999999999999976
No 357
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.78 E-value=4 Score=39.08 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=104.6
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-.+-.+.++-..+.+...+.|+...+ + ++...+.||.. +... -+.+.++- . +-+..
T Consensus 6 ~a~vTPf~~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~ 83 (289)
T cd00951 6 SFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATA 83 (289)
T ss_pred EEeecCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHH
Confidence 5566777544434444455788888888876543 2 23456666532 2222 35566664 3 66777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.+++++|+++|++++.+. .|.. . + .+.+-..+..+
T Consensus 84 i~~a~~a~~~Gad~v~~~--pP~y-----------~-~-------------------------------~~~~~i~~~f~ 118 (289)
T cd00951 84 IAYAQAAEKAGADGILLL--PPYL-----------T-E-------------------------------APQEGLYAHVE 118 (289)
T ss_pred HHHHHHHHHhCCCEEEEC--CCCC-----------C-C-------------------------------CCHHHHHHHHH
Confidence 788999999999999873 2321 0 0 00001233456
Q ss_pred HHHHhcCCcEEEEec----CCHHHHHHHHH-c-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH
Q 017492 219 WLQTITKLPILVKGV----LTAEDARIAVQ-A-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG 292 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v----~~~~~a~~a~~-a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~ 292 (370)
.+.+.+++||++=.. .+++...++.+ . .+-+|.-+. ..+..+.++.+..+++..|+ .|-.+.
T Consensus 119 ~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~pnivgiKds~----------~d~~~~~~~~~~~~~~~~v~--~G~~~~ 186 (289)
T cd00951 119 AVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVGFKDGV----------GDIELMRRIVAKLGDRLLYL--GGLPTA 186 (289)
T ss_pred HHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhcCCCeEEE--eCCCcc
Confidence 666777899887642 56777777766 3 333443321 13444555555544344333 333322
Q ss_pred HH-HHHHHHhCCCEEEEcHHHH
Q 017492 293 TD-VFKALALGASGIFIGRPVV 313 (370)
Q Consensus 293 ~d-v~kalalGAd~V~igr~~l 313 (370)
++ +..++.+||++++.|.+-+
T Consensus 187 d~~~~~~l~~Ga~G~is~~~n~ 208 (289)
T cd00951 187 EVFALAYLAMGVPTYSSAVFNF 208 (289)
T ss_pred hHhHHHHHHCCCCEEEechhhh
Confidence 33 5778899999998886543
No 358
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=94.75 E-value=4.6 Score=39.81 Aligned_cols=112 Identities=14% Similarity=0.248 Sum_probs=76.1
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCCCcc----chHHHHHHHHHHccCCCcEEEecCCCCH-------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLDYVP----ATIMALEEVVKATQGRIPVFLDGGVRRG------------- 292 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~----~~~~~l~~i~~~~~~~ipvi~~GGI~~~------------- 292 (370)
.++++|..-. +.|+|.+-++. ||-+.....| -.++.|.+|.+.+ .++|+..=||=..+
T Consensus 173 T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v-~~vPLVLHGgSGvp~~~~~~~~~~g~~ 251 (347)
T PRK13399 173 TDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARL-PNTHLVMHGSSSVPQELQEIINAYGGK 251 (347)
T ss_pred CCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhc-CCCCEEEeCCCCCCHHHHHHHHHhcCC
Confidence 4688887665 57999999874 5543211012 3467899998877 25999988876554
Q ss_pred ---------HHHHHHHHhCCCEEEEcHHHHHHHHh-------cC------HHHHHHHHHHHHHHHHHHHHHcCCCC
Q 017492 293 ---------TDVFKALALGASGIFIGRPVVYSLAA-------EG------EKGVRRVLEMLREEFELAMALSGCRS 346 (370)
Q Consensus 293 ---------~dv~kalalGAd~V~igr~~l~~~~~-------~G------~~~v~~~l~~l~~el~~~m~~~G~~~ 346 (370)
+++.|++.+|..=|-+++-+..+... .. ..-.....+.+++-++..|..+|...
T Consensus 252 ~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~l~gs~~ 327 (347)
T PRK13399 252 MKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTALCKQRFEAFGTAG 327 (347)
T ss_pred ccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999999976543221 00 11233344567777888888888654
No 359
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=94.73 E-value=0.2 Score=47.40 Aligned_cols=40 Identities=38% Similarity=0.544 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEcc
Q 017492 214 WKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+.++.+|+.+++||.+. |+.++++++.+. .|+|+++|+.
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGS 227 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA-AGADGVIVGS 227 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH-TTSSEEEESH
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH-ccCCEEEECH
Confidence 456999999999999998 478999999998 9999999953
No 360
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.73 E-value=4.3 Score=39.19 Aligned_cols=181 Identities=19% Similarity=0.211 Sum_probs=108.7
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHhc-------cCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVAS-------TGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~~-------~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+-..+.|+...+ + +..+.|.||-.+ ... -|.+.+.- ..+-+.
T Consensus 9 i~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g-~~~t~e 87 (299)
T COG0329 9 IPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG-SNSTAE 87 (299)
T ss_pred eeccccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC-CCcHHH
Confidence 56777887643334555555777777888876444 2 234567766432 222 24566654 344566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|++.|++++.+. +|.. .. .+..-..+..
T Consensus 88 ai~lak~a~~~Gad~il~v--~PyY-----------------~k--------------------------~~~~gl~~hf 122 (299)
T COG0329 88 AIELAKHAEKLGADGILVV--PPYY-----------------NK--------------------------PSQEGLYAHF 122 (299)
T ss_pred HHHHHHHHHhcCCCEEEEe--CCCC-----------------cC--------------------------CChHHHHHHH
Confidence 6788999999999999874 3332 00 0011134557
Q ss_pred HHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 218 KWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+++.+.+++|+++=.+ ++++...++.+. .+-+|.-+ ...+..+.++......+-=++.+|
T Consensus 123 ~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~~~nivgiKd~----------~gd~~~~~~~~~~~~~~~f~v~~G-- 190 (299)
T COG0329 123 KAIAEAVDLPVILYNIPSRTGVDLSPETIARLAEHPNIVGVKDS----------SGDLDRLEEIIAALGDRDFIVLSG-- 190 (299)
T ss_pred HHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeC----------CcCHHHHHHHHHhcCccCeeEEeC--
Confidence 7788888999998775 567888777772 23333222 125566666665543211144444
Q ss_pred CCHHHHHHHHHhCCCEEEEcHH
Q 017492 290 RRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~ 311 (370)
.-+.++-.+.+|++++..+..
T Consensus 191 -~d~~~~~~~~~G~~G~is~~~ 211 (299)
T COG0329 191 -DDELALPALLLGADGVISVTA 211 (299)
T ss_pred -chHHHHHHHhCCCCeEEeccc
Confidence 335567788899999998874
No 361
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.71 E-value=0.32 Score=47.46 Aligned_cols=68 Identities=18% Similarity=0.108 Sum_probs=50.1
Q ss_pred HHHHHHHHHcC--ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 236 AEDARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 236 ~~~a~~a~~aG--~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
.+-++.+.++| +|.|++...-|+ ....++.+..+++..+ . +.+..|.|-+++++..++.+|||+|-+|
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~~~p-~-~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVREAFP-E-HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHhhCC-C-CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 34577888885 999999754332 2335567777777652 3 4555588999999999999999998776
No 362
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.70 E-value=0.19 Score=48.53 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=57.7
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++||++.-|- +-.++++ +-.+|||+|++-.|++
T Consensus 34 i~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 34 LEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 355778899999996654421111111 223556666667778999986664 5555554 3347999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLREE 334 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~e 334 (370)
+.. .++++.+++..+.+.
T Consensus 113 ~~~---~~~~i~~~f~~va~~ 130 (303)
T PRK03620 113 TEA---PQEGLAAHVEAVCKS 130 (303)
T ss_pred CCC---CHHHHHHHHHHHHHh
Confidence 632 356666665555443
No 363
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=94.69 E-value=0.42 Score=47.00 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=47.3
Q ss_pred ceeEcCeeecCceeecccccccccCChh------hHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCCh
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG------EYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDR 135 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~~------e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~ 135 (370)
..+|.+.++++-|+.|||+.. ...+++ .+..-+.-++-|+.+++++....+.+-. ..++. .-++.....
T Consensus 5 P~~ig~~~lkNRiv~apm~~~-~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~--~~~~~--~~i~~d~~i 79 (341)
T PF00724_consen 5 PLKIGNLTLKNRIVMAPMTTN-MADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGR--GFPGQ--PGIWDDEQI 79 (341)
T ss_dssp -EEETTEEESSSEEE----SS-TSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGS--SSTTS--EBSSSHHHH
T ss_pred CeeECCEEecCCeEECCCCCC-CcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccc--ccccc--chhchhhHH
Confidence 367888999999999999643 233333 3455556666688888876544333211 11211 112222223
Q ss_pred HHHHHHHHHHHHcCCcEEE
Q 017492 136 NVVAQLVRRAERAGFKAIA 154 (370)
Q Consensus 136 ~~~~~~l~ra~~~G~~ai~ 154 (370)
+...++++.+.+.|++.++
T Consensus 80 ~~~k~l~~~vh~~Ga~i~~ 98 (341)
T PF00724_consen 80 PGLKKLADAVHAHGAKIIA 98 (341)
T ss_dssp HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCcccee
Confidence 4556677778888987653
No 364
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.64 E-value=0.15 Score=52.40 Aligned_cols=249 Identities=16% Similarity=0.203 Sum_probs=128.6
Q ss_pred hhcccceeeecccC-CC-CCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l~-~~-~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|.... .. +++|++|++ +..+..||+-|||...+ |..+|.+.++.|...++. .+.+.++..
T Consensus 13 ltfddvll~p~~~~~~~~~~v~~~t~~-~~~l~~Pi~sa~Mdtvt------~~~MAiaLAr~GGiGvih--~nl~~~~q~ 83 (479)
T PRK07807 13 LTYDDVFLVPSRSDVGSRFDVDLSTAD-GTGTTIPLVVANMTAVA------GRRMAETVARRGGLVVLP--QDIPIDVVA 83 (479)
T ss_pred cCccceEecccccCccCCCceecccCC-CCccccceeecCCcchh------HHHHHHHHHHCCCceEee--CCCCHHHHH
Confidence 37999999998653 33 488999974 88999999999997654 778999999999776674 234454432
Q ss_pred cc---CC-CceEE-EEeecCChHHHHHHHHHHHHcCCcEEEEecCC--CCCcchhHHhhhhcCCCCccccccccccccCc
Q 017492 119 ST---GP-GIRFF-QLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGRREADIKNRFTLPPFLTLKNFQGLDLGK 191 (370)
Q Consensus 119 ~~---~~-~~~~~-Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~--p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~ 191 (370)
+. .+ ...+. +...-.....+.+.++...+.++..+.|.-+. ++.--..+|++.. . +. .....+.......
T Consensus 84 ~~l~~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~-~-~~-~~V~diMt~~~it 160 (479)
T PRK07807 84 EVVAWVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV-D-RF-TQVRDVMSTDLVT 160 (479)
T ss_pred HHHhhcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC-c-cC-CCHHHhccCCceE
Confidence 21 11 10000 00111122334455566666777766653211 1100112333210 0 00 0000000000000
Q ss_pred ccc-ccchhhHHHhhh-------cCC--CC----ccHHHHHHHHHhcCCcE-------EEE---ec--CCHHHHHHHHHc
Q 017492 192 MDE-ANDSGLAAYVAG-------QID--RS----LSWKDVKWLQTITKLPI-------LVK---GV--LTAEDARIAVQA 245 (370)
Q Consensus 192 ~~~-~~~~~~~~~~~~-------~~d--~~----~~~~~i~~ir~~~~~Pv-------~vK---~v--~~~~~a~~a~~a 245 (370)
... ....-+...+.. ..| .. .+..+|...... + |. .+. ++ ...+.++.+.++
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~-~-~~~~~~g~l~V~aav~~~~~~~~~a~~Lv~a 238 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY-T-PAVDAAGRLRVAAAVGINGDVAAKARALLEA 238 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC-C-chhhhhhccchHhhhccChhHHHHHHHHHHh
Confidence 000 000000000000 000 00 122222222111 1 11 000 01 113557888999
Q ss_pred CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 246 GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 246 G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
|+|.|.+....|. +...++.+.+|++..+ +++||+ |.|.|.+.+..++.+|||+|-+|
T Consensus 239 Gvd~i~~D~a~~~----~~~~~~~i~~ik~~~p-~~~v~a-gnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 239 GVDVLVVDTAHGH----QEKMLEALRAVRALDP-GVPIVA-GNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred CCCEEEEeccCCc----cHHHHHHHHHHHHHCC-CCeEEe-eccCCHHHHHHHHHcCCCEEEEC
Confidence 9999999754332 3456678888888763 577776 88999999999999999997743
No 365
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=94.60 E-value=0.21 Score=47.88 Aligned_cols=90 Identities=21% Similarity=0.338 Sum_probs=57.3
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+.+.|+++|.+.++-|-...-... -.+.+..+++.+.+++||++.-|- +-.+.++ +-.+|||++++-.|+++
T Consensus 28 ~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~ 106 (289)
T cd00951 28 EWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLT 106 (289)
T ss_pred HHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 45778999999997654421111111 223455566666678999997775 5566655 33489999999999875
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~ 333 (370)
.. .++++.++++.+.+
T Consensus 107 ~~---~~~~i~~~f~~v~~ 122 (289)
T cd00951 107 EA---PQEGLYAHVEAVCK 122 (289)
T ss_pred CC---CHHHHHHHHHHHHh
Confidence 32 45666555555443
No 366
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.58 E-value=0.43 Score=46.53 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=56.6
Q ss_pred CcEEEEecCCHHH---HHHHHHcC--ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHH
Q 017492 226 LPILVKGVLTAED---ARIAVQAG--AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALA 300 (370)
Q Consensus 226 ~Pv~vK~v~~~~~---a~~a~~aG--~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kala 300 (370)
+++.+-...+.++ +..+.++| +|.|++...-|+ ....++.+..+++.. ..|++..|.|-+.+++..++.
T Consensus 83 L~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~--p~~~vi~GnV~t~e~a~~l~~ 156 (321)
T TIGR01306 83 LFASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL--PDSFVIAGNVGTPEAVRELEN 156 (321)
T ss_pred cEEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC--CCCEEEEecCCCHHHHHHHHH
Confidence 4444333345544 66788989 799998753221 234556778887766 568888899999999999999
Q ss_pred hCCCEEEEc
Q 017492 301 LGASGIFIG 309 (370)
Q Consensus 301 lGAd~V~ig 309 (370)
+|||+|-+|
T Consensus 157 aGad~I~V~ 165 (321)
T TIGR01306 157 AGADATKVG 165 (321)
T ss_pred cCcCEEEEC
Confidence 999999877
No 367
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.58 E-value=0.3 Score=47.39 Aligned_cols=107 Identities=23% Similarity=0.347 Sum_probs=71.5
Q ss_pred CceEEEEeecCChH----HHHHHHHHHHHc---CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccc
Q 017492 123 GIRFFQLYVYKDRN----VVAQLVRRAERA---GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEA 195 (370)
Q Consensus 123 ~~~~~Qly~~~d~~----~~~~~l~ra~~~---G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~ 195 (370)
+..|+.|-.-.|+. ...+.+++++.. |+..+.+..|.|+.++|..++.-..-.|-
T Consensus 164 ~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl------------------ 225 (326)
T PRK11840 164 GWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL------------------ 225 (326)
T ss_pred CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeec------------------
Confidence 45688876543322 235566777776 99998888899988777766521000010
Q ss_pred cchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 196 NDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 196 ~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
++.+.+ +-+-.+.+.|+.+++..++||++- |+.+++|+..+++.|+|++-+.
T Consensus 226 -----~~pIGs-g~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 226 -----GAPIGS-GLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred -----cccccC-CCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 000110 111126778899998889999986 5789999999999999999763
No 368
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=94.55 E-value=0.27 Score=46.70 Aligned_cols=92 Identities=21% Similarity=0.386 Sum_probs=58.1
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++...+++||++.-|=.+-.++++ +-.+|||+|++..|++
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 345677899999997764432111111 23455666666666899987666655555544 3447999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~ 333 (370)
+. ..++++.+++..+.+
T Consensus 104 ~~---~~~~~~~~~~~~ia~ 120 (281)
T cd00408 104 NK---PSQEGIVAHFKAVAD 120 (281)
T ss_pred CC---CCHHHHHHHHHHHHh
Confidence 64 245555555555444
No 369
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=94.54 E-value=0.36 Score=47.07 Aligned_cols=42 Identities=14% Similarity=0.468 Sum_probs=36.5
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHH-cCccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQ-AGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~-aG~d~I~vs 253 (370)
..|+.++++++.+++||+.=| +.++++++.+.+ .|+|+|.++
T Consensus 181 a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 181 AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 368999999999999988765 689999999987 799999884
No 370
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.45 E-value=0.16 Score=46.21 Aligned_cols=80 Identities=29% Similarity=0.303 Sum_probs=56.9
Q ss_pred ccHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 212 LSWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 212 ~~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.-.+.|+.+++..+ .-|....++++++++.+.++|++.|+-=| -+.+.+..+.+ .++|++- |+.
T Consensus 50 ~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~----------~~~ev~~~a~~---~~ip~~P--G~~ 114 (211)
T COG0800 50 AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPG----------LNPEVAKAANR---YGIPYIP--GVA 114 (211)
T ss_pred CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCC----------CCHHHHHHHHh---CCCcccC--CCC
Confidence 34567999999875 33444567999999999999999985311 12223332222 2566654 899
Q ss_pred CHHHHHHHHHhCCCEE
Q 017492 291 RGTDVFKALALGASGI 306 (370)
Q Consensus 291 ~~~dv~kalalGAd~V 306 (370)
|+.++..|+.+|++.+
T Consensus 115 TptEi~~Ale~G~~~l 130 (211)
T COG0800 115 TPTEIMAALELGASAL 130 (211)
T ss_pred CHHHHHHHHHcChhhe
Confidence 9999999999999866
No 371
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=94.45 E-value=0.19 Score=46.98 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=35.7
Q ss_pred cHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEE
Q 017492 213 SWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIV 252 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~v 252 (370)
+...|+-|++..++||++- |+.+++|+..+++.|+|++-+
T Consensus 177 n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 177 NLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred CHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEee
Confidence 6678899999989999886 578999999999999999976
No 372
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=94.39 E-value=0.26 Score=47.78 Aligned_cols=91 Identities=24% Similarity=0.359 Sum_probs=56.3
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHH----HHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKA----LALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~ka----lalGAd~V~igr~~l~ 314 (370)
+.+++.|+++|.+.++-|-...-... -.+.+..+++.+.+++|||+.=|=.+-.|+++. -.+|||+|++-.|+++
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~ 115 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWL 115 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCC
Confidence 45678999999997654321111111 223455566666678999876664455666553 3479999999999876
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~ 333 (370)
.. .++++.++++.+.+
T Consensus 116 ~~---~~~~l~~yf~~va~ 131 (309)
T cd00952 116 PL---DVDTAVQFYRDVAE 131 (309)
T ss_pred CC---CHHHHHHHHHHHHH
Confidence 42 34555555555444
No 373
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=94.36 E-value=5.2 Score=38.58 Aligned_cols=183 Identities=17% Similarity=0.116 Sum_probs=104.6
Q ss_pred CceeecccccccccCChhhHHHHHHHHHcCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChHH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRNV 137 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~ 137 (370)
.|.++.|+.-.+-.+.++-..+.+...+.|+...+ + ++.+.+.||.. +... -+.+.++- . +-+.
T Consensus 12 ~~a~vTPf~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~ 89 (303)
T PRK03620 12 LSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQ 89 (303)
T ss_pred EEeeeCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHH
Confidence 46677787544444444445777777788876543 2 33456666532 2222 35566663 3 6677
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..+++++++++|++++.+. .|... + | ..+-..+..
T Consensus 90 ~i~~~~~a~~~Gadav~~~--pP~y~-~----------~--------------------------------~~~~i~~~f 124 (303)
T PRK03620 90 AIEYAQAAERAGADGILLL--PPYLT-E----------A--------------------------------PQEGLAAHV 124 (303)
T ss_pred HHHHHHHHHHhCCCEEEEC--CCCCC-C----------C--------------------------------CHHHHHHHH
Confidence 7888999999999999874 23210 0 0 000123345
Q ss_pred HHHHHhcCCcEEEEec----CCHHHHHHHH-Hc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 218 KWLQTITKLPILVKGV----LTAEDARIAV-QA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v----~~~~~a~~a~-~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+.+.+.+++||++=.. ++++...++. +. .+-+|.-+. ..+..+.++.+..+++..|+ .|...
T Consensus 125 ~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~pni~giK~s~----------~d~~~~~~~~~~~~~~f~vl--~G~d~ 192 (303)
T PRK03620 125 EAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLVGFKDGV----------GDIELMQRIVRALGDRLLYL--GGLPT 192 (303)
T ss_pred HHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEeCC----------CCHHHHHHHHHHcCCCeEEE--eCCCc
Confidence 6667777899887532 5677777776 53 344444431 23444555555554455444 23221
Q ss_pred -HHHHHHHHHhCCCEEEEcHHHH
Q 017492 292 -GTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 292 -~~dv~kalalGAd~V~igr~~l 313 (370)
-..+..++.+||++...|.+-+
T Consensus 193 ~e~~~~~~~~~G~~G~is~~an~ 215 (303)
T PRK03620 193 AEVFAAAYLALGVPTYSSAVFNF 215 (303)
T ss_pred chhhHHHHHhCCCCEEEecHHhh
Confidence 2234556789999988777443
No 374
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=94.36 E-value=5.5 Score=38.84 Aligned_cols=81 Identities=23% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCHHHHHHHH-HcCccEEEEcc---CCccCCC-C---ccchHHHHHHHHHHccCCCcEEEecCCCC--------------
Q 017492 234 LTAEDARIAV-QAGAAGIIVSN---HGARQLD-Y---VPATIMALEEVVKATQGRIPVFLDGGVRR-------------- 291 (370)
Q Consensus 234 ~~~~~a~~a~-~aG~d~I~vs~---~gg~~~~-~---~~~~~~~l~~i~~~~~~~ipvi~~GGI~~-------------- 291 (370)
.++++|+... +.|+|.+-++. ||-+... + ..-.++.|.+|.+.+. ++|+..=||=..
T Consensus 164 T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 164 TQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 4688887665 57999999874 5544221 1 1135678999988872 589988886533
Q ss_pred --------HHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 292 --------GTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 292 --------~~dv~kalalGAd~V~igr~~l~~ 315 (370)
-+|+.|++.+|..-|-+++-+..+
T Consensus 243 ~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a 274 (321)
T PRK07084 243 LKDAIGIPEEQLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred cccCCCCCHHHHHHHHHcCCceeccchHHHHH
Confidence 388999999999999999977554
No 375
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=94.35 E-value=1.2 Score=44.36 Aligned_cols=214 Identities=18% Similarity=0.235 Sum_probs=109.7
Q ss_pred ceeEcCeeecCceeecccccccccCChh---hH--HHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChH
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKMAHPEG---EY--ATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRN 136 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~~~~~~---e~--~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~ 136 (370)
..++.+.+|++-|++|||.-.... ++| |. ..-+.=++-|+.+++.+....... ... .+....||...+.+
T Consensus 9 P~~lg~~~L~NRivmaPm~~~~a~-~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~--g~~--~~~~~~l~~d~~i~ 83 (363)
T COG1902 9 PLKLGGLTLKNRIVMAPMTRNRAT-PDGLPTDLLAEYYAERAKGGAGLIITEATAVDPG--GRG--YPGQPGLWSDAQIP 83 (363)
T ss_pred CeeECCEEeccceeecCccccccc-CCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcc--ccc--CCCCCccCChhHhH
Confidence 466778999999999999755432 323 33 333333333466555442211111 111 12333455433356
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
....+.+.+.+.|++. .+-+..+ |++.+ ..... .|..+.+.. +... .. ........+.++
T Consensus 84 ~~~~vt~avH~~G~~i-~iQL~H~--Gr~~~-~~~~~-~~~~vapS~---~~~~--------~~----~~~~pr~mt~~e 143 (363)
T COG1902 84 GLKRLTEAVHAHGAKI-FIQLWHA--GRKAR-ASHPW-LPSAVAPSA---IPAP--------GG----RRATPRELTEEE 143 (363)
T ss_pred HHHHHHHHHHhcCCeE-EEEeccC--ccccc-ccccC-CCcccCCCc---cccc--------cC----CCCCCccCCHHH
Confidence 6677778888888854 4454433 21111 00000 011111100 0000 00 011123457788
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc---C----------CCCccc-------hHHHHHHHHHH
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR---Q----------LDYVPA-------TIMALEEVVKA 276 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~ 276 (370)
|+++.+.+ .+-|++|.++|.|+|.+.+..|+ | -.+|-+ ..+.+..++++
T Consensus 144 I~~ii~~f-----------~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~ 212 (363)
T COG1902 144 IEEVIEDF-----------ARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREA 212 (363)
T ss_pred HHHHHHHH-----------HHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 88888764 36789999999999999653333 1 123322 33456666666
Q ss_pred ccCCCcEEE--------ec-CCC--CHHHHHHHHH-hC-CCEEEEcHH
Q 017492 277 TQGRIPVFL--------DG-GVR--RGTDVFKALA-LG-ASGIFIGRP 311 (370)
Q Consensus 277 ~~~~ipvi~--------~G-GI~--~~~dv~kala-lG-Ad~V~igr~ 311 (370)
++.+.||.. .+ |.. ....+++.|. .| .|.+-+..+
T Consensus 213 vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~ 260 (363)
T COG1902 213 VGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEG 260 (363)
T ss_pred hCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecc
Confidence 654444431 22 333 4566777777 78 587777664
No 376
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=94.28 E-value=0.22 Score=51.25 Aligned_cols=246 Identities=16% Similarity=0.206 Sum_probs=130.2
Q ss_pred hhcccceeeecccC-CC-CCCccceeEcCeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRILI-DV-SKIDMNTTVLGFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l~-~~-~~vd~s~~l~g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|.... .. +++|++|. +..+++.||+-|||-..+ |-.+|.+.++.|-..++.. ++++++..
T Consensus 12 ltfddvll~p~~~~~~~~~~v~~~t~-~~~~l~~P~vsa~mdtvT------e~~MAi~~A~~GGigvIh~--n~~i~~qa 82 (475)
T TIGR01303 12 LTYNDVFMVPSRSEVGSRFDVDLSTA-DGTGTTIPLVVANMTAVA------GRRMAETVARRGGIVILPQ--DLPIPAVK 82 (475)
T ss_pred CCccceEEccCccCccCCCceeeccc-ccCccccceeeccchhhH------HHHHHHHHHHCCCEEEEeC--CCCHHHHH
Confidence 37999999998652 23 48899988 467999999999996554 7789999999998888854 56676544
Q ss_pred ccC---C-Cc----eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC-CCCcchhHHhhhhcCCCCcccccccccccc
Q 017492 119 STG---P-GI----RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT-PRLGRREADIKNRFTLPPFLTLKNFQGLDL 189 (370)
Q Consensus 119 ~~~---~-~~----~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~-p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~ 189 (370)
+.. + .. ..+.+. ....+.+.++...+.+...+.|.-+. ++.--..+|++.. +.......+-....
T Consensus 83 e~v~~VKv~eim~~~pvtv~---p~~tI~eA~~lm~~~~~~~~vVvD~gklvGIVT~rDL~~~---~~~~~V~dIMt~~l 156 (475)
T TIGR01303 83 QTVAFVKSRDLVLDTPITLA---PHDTVSDAMALIHKRAHGAAVVILEDRPVGLVTDSDLLGV---DRFTQVRDIMSTDL 156 (475)
T ss_pred HHHhhcchhhccccCCeEEC---CCCCHHHHHHHHHhcCCeEEEEEECCEEEEEEEHHHhhcC---CCCCCHHHHccCCc
Confidence 321 1 00 111222 12234445555666676665543110 1100112333210 00000000000000
Q ss_pred Ccccc-ccchhhHHHhhh-------cCC--C----CccHHHHHHHHHhcCCcE-------EEE---ec--CCHHHHHHHH
Q 017492 190 GKMDE-ANDSGLAAYVAG-------QID--R----SLSWKDVKWLQTITKLPI-------LVK---GV--LTAEDARIAV 243 (370)
Q Consensus 190 ~~~~~-~~~~~~~~~~~~-------~~d--~----~~~~~~i~~ir~~~~~Pv-------~vK---~v--~~~~~a~~a~ 243 (370)
..... ....-+...+.. ..| . -.+..+|...... + |. .+. ++ ...+-++.+.
T Consensus 157 itv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~-~-~~~d~~grl~Vgaav~~~~~~~~ra~~Lv 234 (475)
T TIGR01303 157 VTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY-T-PATDAAGRLRIGAAVGINGDVGGKAKALL 234 (475)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC-C-chhhhccCceehheeeeCccHHHHHHHHH
Confidence 00000 000000000000 000 0 0122333222221 1 11 011 11 1135578899
Q ss_pred HcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 244 QAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 244 ~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++|+|.|++...-|+. ....+.+..|++.. .++|||+ |.+.|.+.+..++.+|||+|-+|
T Consensus 235 ~aGVd~i~~D~a~g~~----~~~~~~i~~i~~~~-~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg 294 (475)
T TIGR01303 235 DAGVDVLVIDTAHGHQ----VKMISAIKAVRALD-LGVPIVA-GNVVSAEGVRDLLEAGANIIKVG 294 (475)
T ss_pred HhCCCEEEEeCCCCCc----HHHHHHHHHHHHHC-CCCeEEE-eccCCHHHHHHHHHhCCCEEEEC
Confidence 9999999997643432 34556777777754 3799999 66999999999999999998755
No 377
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=94.26 E-value=0.47 Score=45.18 Aligned_cols=91 Identities=22% Similarity=0.188 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCcEEEEe---cCCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHc-------cCCCcE
Q 017492 215 KDVKWLQTITKLPILVKG---VLTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKAT-------QGRIPV 283 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~---v~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~-------~~~ipv 283 (370)
+.++.+++..+.|...|. +.+.+++..+.++| +|+|.+.|.+. ........+.+.. ..++-+
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i 242 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSP-------EELDPAVLILKARAHLDGKGLPRVKI 242 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCCh-------HHHHHHHHHHHHHHhhhhcCCCceEE
Confidence 457777776543344443 35688899999999 99998876432 2222111122211 136789
Q ss_pred EEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 284 FLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 284 i~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+++|||. .+.+.....+|.|.+++|+.+.
T Consensus 243 ~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~ 271 (281)
T cd00516 243 EASGGLD-EENIRAYAETGVDVFGVGTLLH 271 (281)
T ss_pred EEeCCCC-HHHHHHHHHcCCCEEEeCcccc
Confidence 9999997 8888888889999999999764
No 378
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.25 E-value=1.4 Score=43.48 Aligned_cols=129 Identities=19% Similarity=0.304 Sum_probs=76.0
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCc----cchHHHHHHHHHHccCCCc
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV----PATIMALEEVVKATQGRIP 282 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~----~~~~~~l~~i~~~~~~~ip 282 (370)
+++.++++.+ +++||++|-. .+.++ ++...+.|-.-|.+.-.|-|.+..+ ...+..++.+++.. .+|
T Consensus 197 n~~LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~--~lP 273 (352)
T PRK13396 197 NFSLLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLT--HLP 273 (352)
T ss_pred CHHHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhh--CCC
Confidence 3555777654 6899999965 36666 4555667888888875555444322 23556777776654 689
Q ss_pred EEEec----CCCC--HHHHHHHHHhCCCEEEEcHHHHHHH-HhcCHHH-HHHHHHHHHHHHHHHHHHcCC
Q 017492 283 VFLDG----GVRR--GTDVFKALALGASGIFIGRPVVYSL-AAEGEKG-VRRVLEMLREEFELAMALSGC 344 (370)
Q Consensus 283 vi~~G----GI~~--~~dv~kalalGAd~V~igr~~l~~~-~~~G~~~-v~~~l~~l~~el~~~m~~~G~ 344 (370)
||+|- |.+. ..-...|+++|||++++=.-+--.- .+.|... --+-++.|.++++..-..+|.
T Consensus 274 Vi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~ 343 (352)
T PRK13396 274 IMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGR 343 (352)
T ss_pred EEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 99883 3322 2344557889999999987432110 0112110 012345566666666655553
No 379
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.22 E-value=0.53 Score=45.79 Aligned_cols=42 Identities=19% Similarity=0.643 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHH-HcCccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAV-QAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~-~aG~d~I~vs 253 (370)
..|+.++++++.+++||+.=| +.+++++..++ +.|+|+|.++
T Consensus 179 ~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 179 ANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIG 222 (319)
T ss_pred hhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEC
Confidence 368899999999999988754 68999999998 6899999883
No 380
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=94.12 E-value=0.56 Score=44.95 Aligned_cols=153 Identities=24% Similarity=0.286 Sum_probs=84.3
Q ss_pred cCceeecccccccccCChhhHHHHHHHHHcCCcee-e--cCCC------C--CCHH---HH----hccCCCceEEEEeec
Q 017492 71 SMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMT-L--SSWS------T--SSVE---EV----ASTGPGIRFFQLYVY 132 (370)
Q Consensus 71 ~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~-~--s~~~------~--~~~e---ei----~~~~~~~~~~Qly~~ 132 (370)
..|++++=++. .++.=...|+.+.+.|..++ + ++-. . .+.+ ++ .+...-|.++.|-
T Consensus 89 ~~p~ivsi~g~----~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~-- 162 (296)
T cd04740 89 GTPVIASIAGS----TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT-- 162 (296)
T ss_pred CCcEEEEEecC----CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeC--
Confidence 45766654332 12223467788888887654 2 2110 0 1122 22 2222346677663
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+...++++.++++|++++.+. ++-. +. .-|.++.- |. + .. ..+ ..+.......
T Consensus 163 ~~~~~~~~~a~~~~~~G~d~i~~~-nt~~-g~-~~~~~~~~--~~-~--~~---------------~~g-g~sg~~~~~~ 218 (296)
T cd04740 163 PNVTDIVEIARAAEEAGADGLTLI-NTLK-GM-AIDIETRK--PI-L--GN---------------VTG-GLSGPAIKPI 218 (296)
T ss_pred CCchhHHHHHHHHHHcCCCEEEEE-CCCc-cc-ccccccCc--ee-e--cC---------------Ccc-eecCcccchH
Confidence 344456778888999999998763 2111 10 00110000 00 0 00 000 0111112234
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
.++.++++++.+++||+.-+ +.+++++..++++|+|+|.+.
T Consensus 219 ~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~ig 260 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 67889999999999988754 679999999999999999884
No 381
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.01 E-value=0.66 Score=45.26 Aligned_cols=94 Identities=14% Similarity=0.174 Sum_probs=60.7
Q ss_pred CceEEEEeecCCh----HHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccch
Q 017492 123 GIRFFQLYVYKDR----NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDS 198 (370)
Q Consensus 123 ~~~~~Qly~~~d~----~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 198 (370)
.|..+.+-.+.+. +...+.++.++++|+++|.||-.+.. .+++. ++ .
T Consensus 124 ~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~--------~qg~s-g~----~---------------- 174 (318)
T TIGR00742 124 IPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW--------LSGLS-PK----E---------------- 174 (318)
T ss_pred CCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh--------hcCCC-cc----c----------------
Confidence 4566666543221 45567788888899999888743221 01111 00 0
Q ss_pred hhHHHhhhcCCCCccHHHHHHHHHhc-CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 199 GLAAYVAGQIDRSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 199 ~~~~~~~~~~d~~~~~~~i~~ir~~~-~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.. .-++..|+.+.++++.+ ++||+.= ++.+.+++...++ |+|+|.++
T Consensus 175 ------~~-~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g~dgVMig 223 (318)
T TIGR00742 175 ------NR-EIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-HVDGVMVG 223 (318)
T ss_pred ------cc-cCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-CCCEEEEC
Confidence 00 01235799999999987 8998764 4789999998886 99999884
No 382
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=94.00 E-value=1.4 Score=43.26 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=82.5
Q ss_pred cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCC
Q 017492 132 YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRS 211 (370)
Q Consensus 132 ~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 211 (370)
++|.+...++++.|+++|++++=.-. ++...+..... +. ..+. ....+ ......+... ...
T Consensus 12 ~Gdl~~A~~lI~~A~~aGadaVKfQt------~~~~~~~~~~~-~~----~~~~---~~~~~--~~~~~~~~~~---~~~ 72 (329)
T TIGR03569 12 NGSLELAKKLVDAAAEAGADAVKFQT------FKAEDLVSKNA-PK----AEYQ---KINTG--AEESQLEMLK---KLE 72 (329)
T ss_pred cCcHHHHHHHHHHHHHhCCCEEEeee------CCHHHhhCccc-cc----cccc---ccCCc--CCCcHHHHHH---HhC
Confidence 56888999999999999999875431 11111110000 00 0000 00000 0011112221 223
Q ss_pred ccHHHHHHHHH---hcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 212 LSWKDVKWLQT---ITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 212 ~~~~~i~~ir~---~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
+.++..+++.+ ..+++++ =...+.+.+..+.+.|++.+.|... -...+..|..+.+ ...|||.+-|
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~-stpfd~~svd~l~~~~v~~~KIaS~-------~~~n~pLL~~~A~---~gkPvilStG 141 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFL-STPFDLESADFLEDLGVPRFKIPSG-------EITNAPLLKKIAR---FGKPVILSTG 141 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEE-EEeCCHHHHHHHHhcCCCEEEECcc-------cccCHHHHHHHHh---cCCcEEEECC
Confidence 55665555554 4577765 4467888999999999999999532 1234556666654 3789999999
Q ss_pred CCCHHHHHHHHH
Q 017492 289 VRRGTDVFKALA 300 (370)
Q Consensus 289 I~~~~dv~kala 300 (370)
..+-+++..|+.
T Consensus 142 matl~Ei~~Av~ 153 (329)
T TIGR03569 142 MATLEEIEAAVG 153 (329)
T ss_pred CCCHHHHHHHHH
Confidence 999999988875
No 383
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=93.95 E-value=0.3 Score=47.01 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=35.6
Q ss_pred cHHHHHHHHHhcCCcEEE-EecCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITKLPILV-KGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.++.+.++++.+++||+. .++.+++++..++++|||+|.+.
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~ig 263 (300)
T TIGR01037 222 ALRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeec
Confidence 467788999988999885 56789999999999999999884
No 384
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=93.94 E-value=5.4 Score=37.20 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=72.1
Q ss_pred HHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHH---ccCC-CcEEEecCCCC
Q 017492 216 DVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKA---TQGR-IPVFLDGGVRR 291 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~---~~~~-ipvi~~GGI~~ 291 (370)
.++.+.+. ++++-+=.+.+...|..+.++|++.|.. .-||-.|++......+.++++. .... ..+++.| +++
T Consensus 107 Ai~~L~~e-GI~~NvTLiFS~~QAl~aa~aga~~iSp--FvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas-~~~ 182 (239)
T COG0176 107 AIKALEAE-GIKTNVTLIFSAAQALLAAEAGATYISP--FVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVAS-ARF 182 (239)
T ss_pred HHHHHHHC-CCeeeEEEEecHHHHHHHHHhCCeEEEe--ecchHHhhccCchHHHHHHHHHHHHhccccceEEEec-Ccc
Confidence 34444443 6777777889999999999999998876 3456555555444444444443 3223 4566654 999
Q ss_pred HHHHHHHHHhCCCEEEEcHHHHHHHHhcC
Q 017492 292 GTDVFKALALGASGIFIGRPVVYSLAAEG 320 (370)
Q Consensus 292 ~~dv~kalalGAd~V~igr~~l~~~~~~G 320 (370)
+.++..+..+|||.+-+.-.++..+..++
T Consensus 183 ~~~~~~~~l~G~d~~Tip~~~l~~l~~~~ 211 (239)
T COG0176 183 PNHVYIAALAGADVLTIPPDLLKQLLKHG 211 (239)
T ss_pred HHHHHHHHHhCCCcccCCHHHHHHHHhcc
Confidence 99999999999999999998888766553
No 385
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=93.88 E-value=2.6 Score=38.63 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=39.0
Q ss_pred CccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 211 SLSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
...|+.++++++...+|++.=|..+++.+..+.++|+++|.|.
T Consensus 144 ~~G~~~l~~~~~~~~iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 144 PLGLEGLREIRELVNIPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred ccCHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 4578899999998889999988999999999999999999874
No 386
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.88 E-value=0.44 Score=46.04 Aligned_cols=89 Identities=25% Similarity=0.394 Sum_probs=54.4
Q ss_pred HHHHHcCccEEEEccCCccCCCCcc-chHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVP-ATIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~-~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
+.+++.|+|+|++.++.|-...-.. --.+.+..+++.+.+++|||+.-|=.+-.++++ +-.+|||++++-.|+++
T Consensus 32 ~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~ 111 (299)
T COG0329 32 EFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYN 111 (299)
T ss_pred HHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 4578899999999765442111111 122355666677777899988544444444433 33489999999999987
Q ss_pred HHHhcCHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEML 331 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l 331 (370)
.. .++++.+.+..+
T Consensus 112 k~---~~~gl~~hf~~i 125 (299)
T COG0329 112 KP---SQEGLYAHFKAI 125 (299)
T ss_pred CC---ChHHHHHHHHHH
Confidence 42 245544444433
No 387
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=93.81 E-value=0.13 Score=47.64 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=51.3
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH-----------HHHHHHHhCCCE
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT-----------DVFKALALGASG 305 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~-----------dv~kalalGAd~ 305 (370)
+-++.+.+.|+|+++++.+ .+..+++..+ .--+.+.+||+- . .+..++..|||.
T Consensus 139 ~~a~~a~~~g~dgvv~~~~-------------~~~~ir~~~~-~~~~~v~pGI~~-~g~~~~dq~~~~~~~~ai~~Gad~ 203 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSAQ-------------EAAAIREATG-PDFLLVTPGIRP-AGSDAGDQKRVMTPAQAIAAGSDY 203 (230)
T ss_pred HHHHHHHHcCCeEEEeChH-------------HHHHHHhhcC-CceEEEcCCcCC-CCCCcchHHHHhCHHHHHHcCCCE
Confidence 4456778899999988532 2344555443 334577899972 3 477788899999
Q ss_pred EEEcHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017492 306 IFIGRPVVYSLAAEGEKGVRRVLEMLREEFE 336 (370)
Q Consensus 306 V~igr~~l~~~~~~G~~~v~~~l~~l~~el~ 336 (370)
+.+||+...+ +-....++.+.+++.
T Consensus 204 iVvGR~I~~a------~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 204 IVVGRPITQA------ADPAAAYEAILAEIA 228 (230)
T ss_pred EEECCcccCC------CCHHHHHHHHHHHhh
Confidence 9999998642 112234555555553
No 388
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=93.80 E-value=4 Score=40.65 Aligned_cols=216 Identities=15% Similarity=0.065 Sum_probs=104.1
Q ss_pred ceeEcCeeecCceeecccccccc-cCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHHHHH
Q 017492 62 NTTVLGFKISMPIMIAPTAMQKM-AHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNVVAQ 140 (370)
Q Consensus 62 s~~l~g~~l~~Pi~iapm~~~~~-~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~~~~ 140 (370)
..+|.+.++++-|+.|||+.... ..+.-....-+.-++-|+.+++++....+.+.. ..+. ....+|.....+.+.+
T Consensus 11 P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~--~~~~-~~~~l~~d~~i~~~~~ 87 (370)
T cd02929 11 PIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSD--DTPR-ISARLWDDGDIRNLAA 87 (370)
T ss_pred CccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccc--cCcc-cCcCcCCHHHHHHHHH
Confidence 45677899999999999963321 112111122222345578887766533322210 1110 0122442223455566
Q ss_pred HHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHHHH
Q 017492 141 LVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWL 220 (370)
Q Consensus 141 ~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~i 220 (370)
+++.+.+.|+++ ++-+..+ |.+......+. .| +.... +.. . .. .........++.++|+++
T Consensus 88 l~~~vh~~G~~i-~~QL~H~--G~~~~~~~~~~-~~--~~ps~---~~~----~--~~----~~~~~~p~~mt~~eI~~i 148 (370)
T cd02929 88 MTDAVHKHGALA-GIELWHG--GAHAPNRESRE-TP--LGPSQ---LPS----E--FP----TGGPVQAREMDKDDIKRV 148 (370)
T ss_pred HHHHHHHCCCeE-EEecccC--CCCCCccCCCC-Cc--cCCCC---CCC----C--cc----ccCCCCCccCCHHHHHHH
Confidence 777778888864 3343322 22111000000 00 00000 000 0 00 000001234677888888
Q ss_pred HHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc---C----------CCCccc-------hHHHHHHHHHHccCC
Q 017492 221 QTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR---Q----------LDYVPA-------TIMALEEVVKATQGR 280 (370)
Q Consensus 221 r~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~---~----------~~~~~~-------~~~~l~~i~~~~~~~ 280 (370)
.+.+ .+.|++|.++|.|+|.+....|+ | -.+|.+ ..+.+..|++.++.+
T Consensus 149 i~~f-----------~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~ 217 (370)
T cd02929 149 RRWY-----------VDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDD 217 (370)
T ss_pred HHHH-----------HHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCC
Confidence 8764 25689999999999999532221 1 112322 335667777776555
Q ss_pred CcEEE---------ecCCCCHH---HHHHHHHhCCCEEEEcH
Q 017492 281 IPVFL---------DGGVRRGT---DVFKALALGASGIFIGR 310 (370)
Q Consensus 281 ipvi~---------~GGI~~~~---dv~kalalGAd~V~igr 310 (370)
++|.. .||..+.+ ++++.|.-..|++-+..
T Consensus 218 ~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~ 259 (370)
T cd02929 218 CAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNV 259 (370)
T ss_pred ceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecC
Confidence 55543 12223444 44555654567765543
No 389
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=93.78 E-value=0.071 Score=47.34 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=79.4
Q ss_pred eEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHh
Q 017492 125 RFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYV 204 (370)
Q Consensus 125 ~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (370)
..|-++ .+-..+.+.+++++++|- -+.||+|.- .|+. . ....-+|+
T Consensus 22 ~vfLl~--g~I~~l~~~v~~~~~~gK-~vfVHiDli----------~Gl~------~---------------D~~~i~~L 67 (175)
T PF04309_consen 22 VVFLLT--GDIGNLKDIVKRLKAAGK-KVFVHIDLI----------EGLS------R---------------DEAGIEYL 67 (175)
T ss_dssp EEEE-S--EECCCHHHHHHHHHHTT--EEEEECCGE----------ETB-------S---------------SHHHHHHH
T ss_pred EEEEEc--CcHHHHHHHHHHHHHcCC-EEEEEehhc----------CCCC------C---------------CHHHHHHH
Confidence 444444 466667788999999884 567788842 2221 0 00111233
Q ss_pred hhcCCCC--c--cHHHHHHHHHhcCCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHH
Q 017492 205 AGQIDRS--L--SWKDVKWLQTITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVK 275 (370)
Q Consensus 205 ~~~~d~~--~--~~~~i~~ir~~~~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~ 275 (370)
.....++ . ....++..++ .++.-+-+.- .+.+. .+.+.+..+|+|.+= |. .++++.+
T Consensus 68 ~~~~~~dGIISTk~~~i~~Ak~-~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil-----------Pg--~~p~vi~ 133 (175)
T PF04309_consen 68 KEYGKPDGIISTKSNLIKRAKK-LGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL-----------PG--VMPKVIK 133 (175)
T ss_dssp HHTT--SEEEESSHHHHHHHHH-TT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE-----------SC--CHHHHHC
T ss_pred HHcCCCcEEEeCCHHHHHHHHH-cCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc-----------hH--HHHHHHH
Confidence 2222121 1 2345666655 4666555653 23343 455668899999882 22 2333433
Q ss_pred Hcc--CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 276 ATQ--GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 276 ~~~--~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~ 314 (370)
.+. .++|||+.|=|++.+|+.++|..||++|..+.+-||
T Consensus 134 ~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 134 KIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp CCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred HHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 332 279999999999999999999999999999887665
No 390
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=93.77 E-value=0.96 Score=41.39 Aligned_cols=42 Identities=19% Similarity=0.590 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHc-CccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQA-GAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~a-G~d~I~vs 253 (370)
..|+.++.+++.+++||+.=+ +.+++++..+++. |+|+|.++
T Consensus 170 ~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 170 ADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred CCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 468889999999999998865 5789999999987 89999884
No 391
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=93.74 E-value=0.63 Score=45.46 Aligned_cols=67 Identities=15% Similarity=0.118 Sum_probs=48.6
Q ss_pred HHHHHHHH--cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQ--AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~--aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+-+..+.+ +|+|.|++...-|+ ....++.+..+++..+ +++||+ |.|-|++-+...+.+|||+|=+|
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~~~P-~~~vIa-GNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY----SEHFVQFVAKAREAWP-DKTICA-GNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHHhCC-CCcEEE-ecccCHHHHHHHHHcCCCEEEEc
Confidence 44667777 59999999753232 2345667888887663 577665 89999998888888999987543
No 392
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=93.73 E-value=1.1 Score=43.44 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=36.9
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+|..++++++.+++||+.-| +.+.+++..++..|+|+|.++.
T Consensus 149 ~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt 191 (307)
T TIGR03151 149 TMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAVQMGT 191 (307)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEeecch
Confidence 68889999998899998875 6889999999999999999854
No 393
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.68 E-value=0.57 Score=45.09 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=36.9
Q ss_pred CccHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 211 SLSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 211 ~~~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
+..++.++++++.+++||+.= ++.+++++..++.+|+|.|.+.
T Consensus 220 p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~ig 263 (301)
T PRK07259 220 PIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVG 263 (301)
T ss_pred cccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEc
Confidence 347888999999999998864 4689999999999999999884
No 394
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=93.63 E-value=0.32 Score=50.20 Aligned_cols=251 Identities=16% Similarity=0.228 Sum_probs=128.9
Q ss_pred hhcccceeeeccc-CCCCCCccceeEc-CeeecCceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHh
Q 017492 41 NAFSRILFRPRIL-IDVSKIDMNTTVL-GFKISMPIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVA 118 (370)
Q Consensus 41 ~~~~~i~l~pr~l-~~~~~vd~s~~l~-g~~l~~Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~ 118 (370)
-.||++.|+|... ...+++|++|.+- +..+..||+-|||...+ +..++.+.++.|...++.. ++++++..
T Consensus 9 ~t~ddv~l~p~~~~~~~~~~~~~t~l~~~~~~~~Piv~a~m~~vT------~~ela~ava~~GglG~i~~--~~~~e~~~ 80 (486)
T PRK05567 9 LTFDDVLLVPAHSEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVT------EARMAIAMAREGGIGVIHK--NMSIEEQA 80 (486)
T ss_pred cCccceEecccccCcCcccccccchhhhhcCcCcCEEeCCCCCcC------HHHHHHHHHhCCCCCEecC--CCCHHHHH
Confidence 3699999999865 2346788888764 46678999999997764 5577777788887777763 44555432
Q ss_pred cc------CCCceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCC--CCCcchhHHhhhhcCCCCccc--c--ccccc
Q 017492 119 ST------GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDT--PRLGRREADIKNRFTLPPFLT--L--KNFQG 186 (370)
Q Consensus 119 ~~------~~~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~--p~~g~r~~d~~~~~~~p~~~~--~--~~~~~ 186 (370)
+. ......-++..-.....+.+.++...+.++..+.|.=+. +..--..+|++..-.....+. + ..+..
T Consensus 81 ~~I~~vk~~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~~~~~V~dim~~~~~v~ 160 (486)
T PRK05567 81 EEVRKVKRSESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETDLSQPVSEVMTKERLVT 160 (486)
T ss_pred HHHHHhhhhhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhcccCCCcHHHHcCCCCCEE
Confidence 11 111000011111122334455566666777666553110 000011223321100000000 0 00000
Q ss_pred cccCccccccchhhHHHhhhc------C--CC----CccHHHHHHHHHh------cCCcEEEEecC-----CHHHHHHHH
Q 017492 187 LDLGKMDEANDSGLAAYVAGQ------I--DR----SLSWKDVKWLQTI------TKLPILVKGVL-----TAEDARIAV 243 (370)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~------~--d~----~~~~~~i~~ir~~------~~~Pv~vK~v~-----~~~~a~~a~ 243 (370)
..... ............. . +. -.+.+++.+.... ....+.+.... +.+.++.+.
T Consensus 161 v~~~~---sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~ 237 (486)
T PRK05567 161 VPEGT---TLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEERAEALV 237 (486)
T ss_pred ECCCC---CHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeecccCcchHHHHHHHH
Confidence 00000 0000000000000 0 00 0133332221111 01234444432 247788999
Q ss_pred HcCccEEEEcc-CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 244 QAGAAGIIVSN-HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 244 ~aG~d~I~vs~-~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
++|+|.|++.. ||.. ...++.+..+++.. .++||++ |++.+.+++..++.+|||+|-+|
T Consensus 238 ~agvdvivvD~a~g~~-----~~vl~~i~~i~~~~-p~~~vi~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 238 EAGVDVLVVDTAHGHS-----EGVLDRVREIKAKY-PDVQIIA-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HhCCCEEEEECCCCcc-----hhHHHHHHHHHhhC-CCCCEEE-eccCCHHHHHHHHHcCCCEEEEC
Confidence 99999998864 4321 22445677776654 3688888 99999999999999999999775
No 395
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=93.62 E-value=0.46 Score=45.71 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=56.9
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+++.|+|+|.+.++.|-...-... -...+..+++.+.+++||++.=|- +-.++++ +-.+|||++++-.|++
T Consensus 32 i~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 32 IEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 355678999999997654421111111 223455566666678999887663 4455544 3348999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLREE 334 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~e 334 (370)
+.. .++++.++++.+.+.
T Consensus 111 ~~~---s~~~i~~~f~~v~~a 128 (296)
T TIGR03249 111 ING---EQEGLYAHVEAVCES 128 (296)
T ss_pred CCC---CHHHHHHHHHHHHhc
Confidence 642 355655555555443
No 396
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=93.62 E-value=6.2 Score=39.63 Aligned_cols=100 Identities=14% Similarity=0.163 Sum_probs=67.3
Q ss_pred cHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCC-------------CccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~--~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 277 (370)
+|+-++.++.. -++++-+=.+.+.+.|..+.++|++.|... -||-.| ..-|.+..+.+|.+..
T Consensus 140 T~eGi~A~~~L~~~GI~~n~TlvFS~~QA~aaaeAGa~~ISPf--VgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~ 217 (391)
T PRK12309 140 TWEGIKAAEVLEKEGIHCNLTLLFGFHQAIACAEAGVTLISPF--VGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYY 217 (391)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchhhhhhhhccCCCccccccchHHHHHHHHHHHH
Confidence 55544444433 278888888999999999999999988764 233111 1123445566665554
Q ss_pred c---CCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 278 Q---GRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 278 ~---~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
. .+..|++ ..+|+..++.+ .+|+|.+-+.-.++..+.
T Consensus 218 ~~~~~~T~Im~-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 257 (391)
T PRK12309 218 KKFGYKTEVMG-ASFRNIGEIIE--LAGCDLLTISPKLLEQLR 257 (391)
T ss_pred HhcCCCcEEEe-cccCCHHHHHH--HHCCCeeeCCHHHHHHHH
Confidence 2 2455555 45999999987 479999999987776553
No 397
>PLN02858 fructose-bisphosphate aldolase
Probab=93.55 E-value=11 Score=44.15 Aligned_cols=110 Identities=14% Similarity=0.170 Sum_probs=73.8
Q ss_pred CHHHHHHHH-HcCccEEEEcc---CCccCCCCccchHHHHHHHHHHcc-CCCcEEEec--CCCCHHHHHHHHHhCCCEEE
Q 017492 235 TAEDARIAV-QAGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQ-GRIPVFLDG--GVRRGTDVFKALALGASGIF 307 (370)
Q Consensus 235 ~~~~a~~a~-~aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~-~~ipvi~~G--GI~~~~dv~kalalGAd~V~ 307 (370)
++++|+.-+ +.|+|.+-|+- ||-+......-.++.|.+|.+.+. .++|+..=| |+. -+++.|++.+|..-|-
T Consensus 1251 ~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~-~~~~~~ai~~Gi~KiN 1329 (1378)
T PLN02858 1251 DVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGASGLP-ESLIKECIENGVRKFN 1329 (1378)
T ss_pred CHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCCCCC-HHHHHHHHHcCCeEEE
Confidence 567776655 57999999873 554421111235678999998873 358888777 555 4778889999999999
Q ss_pred EcHHHHHHHH----hcC----HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 308 IGRPVVYSLA----AEG----EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 308 igr~~l~~~~----~~G----~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+++.+..+.. ..+ ..-.....+.+++..+..|+.+|..
T Consensus 1330 i~T~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gs~ 1375 (1378)
T PLN02858 1330 VNTEVRTAYMEALSSPKKTDLIDVMSAAKEAMKAVVAEKLRLFGSA 1375 (1378)
T ss_pred eCHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9997755422 111 1223444566777778888888754
No 398
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.53 E-value=0.27 Score=45.22 Aligned_cols=97 Identities=20% Similarity=0.152 Sum_probs=52.0
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.+.++++...+.|++-+++.-.--.+.++..-....+..+++..+.+..+.++|||+-. .+.+....|||.+.+|||+.
T Consensus 117 ~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i~V~gGI~~~-~~~~~~~~~ad~~VvGr~I~ 195 (216)
T PRK13306 117 WTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKVSVTGGLVVE-DLKLFKGIPVKTFIAGRAIR 195 (216)
T ss_pred CCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeEEEcCCCCHh-hHHHHhcCCCCEEEECCccc
Confidence 44555555556565544442110011233222334445555544335569999999852 22223445999999999954
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLREEFEL 337 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~el~~ 337 (370)
.+ +...+.++.++++++.
T Consensus 196 ~a------~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 196 GA------ADPAAAARAFKDEIAK 213 (216)
T ss_pred CC------CCHHHHHHHHHHHHHh
Confidence 32 2234456666666643
No 399
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.52 E-value=0.43 Score=45.94 Aligned_cols=82 Identities=23% Similarity=0.360 Sum_probs=59.6
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc-----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCCHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGT 293 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~-----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~~~ 293 (370)
+.|+++-++-+.-.|+.+.++|.++|.+|+++=. ..|.+.-+++ .+.+|.+.+ ++||++|+ |..++.
T Consensus 16 ~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~ 93 (292)
T PRK11320 16 EKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDAC--DLPLLVDIDTGFGGAF 93 (292)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHH
Confidence 5688888888999999999999999999875321 1344444443 334444444 79999987 777888
Q ss_pred HH----HHHHHhCCCEEEE
Q 017492 294 DV----FKALALGASGIFI 308 (370)
Q Consensus 294 dv----~kalalGAd~V~i 308 (370)
++ .++..+||.++.|
T Consensus 94 ~v~r~V~~~~~aGaagi~I 112 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHI 112 (292)
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 86 3455589988888
No 400
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=93.51 E-value=1.3 Score=43.63 Aligned_cols=123 Identities=18% Similarity=0.177 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+...+.++++.+.|++++=+.++..... . ....++
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~-------------------------------------~------~~~~~d 175 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSG-------------------------------------G------EDLRED 175 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcc-------------------------------------h------HHHHHH
Confidence 356666777778889999887765421100 0 001235
Q ss_pred HHHHHHHHHhc--CCcEEEEec--CCHHHHHH----HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEE
Q 017492 214 WKDVKWLQTIT--KLPILVKGV--LTAEDARI----AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 214 ~~~i~~ir~~~--~~Pv~vK~v--~~~~~a~~----a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.+.++.+|+.+ +.++.+..- .+.++|.. +.+.|++.|.= ...+..++.+.++++.. .+||++
T Consensus 176 ~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iEq--------P~~~~~~~~~~~l~~~~--~ipi~~ 245 (357)
T cd03316 176 LARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFEE--------PVPPDDLEGLARLRQAT--SVPIAA 245 (357)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEcC--------CCCccCHHHHHHHHHhC--CCCEEe
Confidence 67889999887 467877642 46666643 33455555421 01122466777777765 799999
Q ss_pred ecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 286 DGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 286 ~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+..+.+..|+.+++..| +|.|.+-
T Consensus 246 dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 246 GENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred ccccccHHHHHHHHHhCCCCEEecC
Confidence 99999999999999877 7888664
No 401
>PLN02979 glycolate oxidase
Probab=93.50 E-value=0.63 Score=46.09 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=62.0
Q ss_pred cHHHHHHHHHhcCCcEEEEecC------CHHHHHHHHHcCccEEEEcc----CCcc-----------------CCC----
Q 017492 213 SWKDVKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSN----HGAR-----------------QLD---- 261 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~----~gg~-----------------~~~---- 261 (370)
++|+|. +..+.|.+++... +.+..++|.++|+++|++.- .|-| ...
T Consensus 111 slEeIa---~a~~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~ 187 (366)
T PLN02979 111 SVEEVA---STGPGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDL 187 (366)
T ss_pred CHHHHH---hccCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccc
Confidence 445544 3345678888753 23457888899999998841 1111 000
Q ss_pred -------------------CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 262 -------------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 262 -------------------~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
....+|+.+..+++.- ++||++ .||.+.+|+.+++.+|+|+|.++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wlr~~~--~~Pviv-KgV~~~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 188 GKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred cCCCcccchhHHHHHhhcCCCCCCHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHhcCCCEEEECC
Confidence 0123567777777654 799888 558899999999999999999875
No 402
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=93.50 E-value=0.57 Score=44.98 Aligned_cols=91 Identities=11% Similarity=0.150 Sum_probs=54.3
Q ss_pred HHHHHHcC-ccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHH
Q 017492 239 ARIAVQAG-AAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 312 (370)
Q Consensus 239 a~~a~~aG-~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~ 312 (370)
.+.+++.| +++|.+.++-|-...-... -.+.+..+++.+.+++||++.=|=.+-.|+++ +-.+|||+|++..|+
T Consensus 27 i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 35577899 9999997654421111111 22345555666667899987644333344443 344899999999998
Q ss_pred HHHHHhcCHHHHHHHHHHHH
Q 017492 313 VYSLAAEGEKGVRRVLEMLR 332 (370)
Q Consensus 313 l~~~~~~G~~~v~~~l~~l~ 332 (370)
++.. .++++.++++.+.
T Consensus 107 y~~~---~~~~i~~yf~~v~ 123 (290)
T TIGR00683 107 YYKF---SFPEIKHYYDTII 123 (290)
T ss_pred CCCC---CHHHHHHHHHHHH
Confidence 7642 3455555554443
No 403
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=93.48 E-value=0.87 Score=44.28 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=69.8
Q ss_pred cHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCC-------------ccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~ 277 (370)
+|+=++.++... ++++-+=.+.+.+.+..+.++|++.|... -||-.|+ .-+.+..+.++.+.+
T Consensus 134 T~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~ 211 (313)
T cd00957 134 TWEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPF--VGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYY 211 (313)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHHHhhhhccccccCCccCCcHHHHHHHHHHHH
Confidence 566554444432 78888888999999999999999988764 2332211 124555566665544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+.+..|++ ..+|+..++.+ .+|+|.+-+.-.++..+..
T Consensus 212 ~~~~~~T~vma-ASfRn~~~v~~--laG~d~~Ti~p~ll~~L~~ 252 (313)
T cd00957 212 KKFGYKTKVMG-ASFRNIGQILA--LAGCDYLTISPALLEELKN 252 (313)
T ss_pred HHcCCCcEEEe-cccCCHHHHHH--HhCCCeEEcCHHHHHHHHh
Confidence 23455554 56999999986 5799999999988876653
No 404
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=93.46 E-value=7.5 Score=37.25 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=104.0
Q ss_pred CceeecccccccccCChhhHHHHHHHHH-cCCceee--c---CCCCCCHHHHh-------ccCC--CceEEEEeecCChH
Q 017492 72 MPIMIAPTAMQKMAHPEGEYATARAASA-AGTIMTL--S---SWSTSSVEEVA-------STGP--GIRFFQLYVYKDRN 136 (370)
Q Consensus 72 ~Pi~iapm~~~~~~~~~~e~~la~aa~~-~G~~~~~--s---~~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~ 136 (370)
.|.++.|+.-.+-.+.++-..+.+-..+ .|+...+ + ++.+.+.||.. +... -+.++++- ..+.+
T Consensus 8 ~~a~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg-~~~t~ 86 (293)
T PRK04147 8 YAALLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG-SVNTA 86 (293)
T ss_pred eeeeECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC-CCCHH
Confidence 4667778754444455555677778877 8865433 3 23456666533 2222 24566653 23566
Q ss_pred HHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHH
Q 017492 137 VVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKD 216 (370)
Q Consensus 137 ~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 216 (370)
...++.+.|++.|++++.+. .|.. + +. ..+-..+.
T Consensus 87 ~ai~~a~~a~~~Gad~v~v~--~P~y----------~--~~-------------------------------~~~~l~~~ 121 (293)
T PRK04147 87 EAQELAKYATELGYDAISAV--TPFY----------Y--PF-------------------------------SFEEICDY 121 (293)
T ss_pred HHHHHHHHHHHcCCCEEEEe--CCcC----------C--CC-------------------------------CHHHHHHH
Confidence 67788899999999999875 2321 0 00 00113445
Q ss_pred HHHHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 217 VKWLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
.+.+.+.+++||++=.. .+++...++.+. .+-+|.-+. ..+..+.++.+..+ +..| .+|
T Consensus 122 f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~~pnvvgiK~s~----------~d~~~~~~~~~~~~-~~~v-~~G- 188 (293)
T PRK04147 122 YREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKVIGVKQTA----------GDLYQLERIRKAFP-DKLI-YNG- 188 (293)
T ss_pred HHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCC-CCEE-EEe-
Confidence 66677777899888753 466777777653 334443321 13344455554443 3433 334
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~ 311 (370)
...-++..+.+|+++++.+..
T Consensus 189 --~d~~~~~~l~~G~~G~is~~~ 209 (293)
T PRK04147 189 --FDEMFASGLLAGADGAIGSTY 209 (293)
T ss_pred --ehHHHHHHHHcCCCEEEechh
Confidence 224467788899999987764
No 405
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.39 E-value=0.46 Score=45.56 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=59.7
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCCHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 294 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~~~d 294 (370)
+.|+++-++-+.-.|+.+.++|.++|.+|+++-. ..|.+.-++. .+.+|.+.+ ++||++|. |..++.+
T Consensus 12 ~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~--~iPviaD~d~GyG~~~~ 89 (285)
T TIGR02317 12 EDILQIPGAINAMAALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVT--DLPLLVDADTGFGEAFN 89 (285)
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCHHH
Confidence 5688888888999999999999999999875421 1343333332 344444444 89999987 8888888
Q ss_pred H----HHHHHhCCCEEEEc
Q 017492 295 V----FKALALGASGIFIG 309 (370)
Q Consensus 295 v----~kalalGAd~V~ig 309 (370)
+ .++..+||.++.|-
T Consensus 90 v~~tv~~~~~aG~agi~IE 108 (285)
T TIGR02317 90 VARTVREMEDAGAAAVHIE 108 (285)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34556899988883
No 406
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.36 E-value=0.85 Score=43.96 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=59.5
Q ss_pred HHHHHhcCCcEEEEecC--CHH----HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCC
Q 017492 218 KWLQTITKLPILVKGVL--TAE----DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRR 291 (370)
Q Consensus 218 ~~ir~~~~~Pv~vK~v~--~~~----~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~ 291 (370)
+++++..+.|+++.... +++ .++.+.+.|+|+|.+.- +-...+....++.+.++++.+ ++||++- ++.+
T Consensus 108 ~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~--~~p~~~~~~~~~~i~~l~~~~--~~pvivK-~v~s 182 (299)
T cd02809 108 EEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTV--DTPVLGRRLTWDDLAWLRSQW--KGPLILK-GILT 182 (299)
T ss_pred HHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEec--CCCCCCCCCCHHHHHHHHHhc--CCCEEEe-ecCC
Confidence 34444445788877653 343 35667789999998842 110001113467888888776 6898885 5899
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 017492 292 GTDVFKALALGASGIFIG 309 (370)
Q Consensus 292 ~~dv~kalalGAd~V~ig 309 (370)
.+++.++..+|||+|.+.
T Consensus 183 ~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 183 PEDALRAVDAGADGIVVS 200 (299)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999999884
No 407
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=93.34 E-value=0.72 Score=43.16 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCcEEEEecC---CH----HHHHHHHHcCccEEEEc--------cC-CccCCCCccchH---HHHHHHHH
Q 017492 215 KDVKWLQTITKLPILVKGVL---TA----EDARIAVQAGAAGIIVS--------NH-GARQLDYVPATI---MALEEVVK 275 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~---~~----~~a~~a~~aG~d~I~vs--------~~-gg~~~~~~~~~~---~~l~~i~~ 275 (370)
+.++.|...+++||++=+-. +. +.++.+.++|+++|.+= +| |+. .-.+.- +.+..+++
T Consensus 59 ~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~---~~~~~ee~~~ki~aa~~ 135 (243)
T cd00377 59 AAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGK---VLVPIEEFVAKIKAARD 135 (243)
T ss_pred HHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCC---eecCHHHHHHHHHHHHH
Confidence 34677777778998876532 33 33677889999999992 22 111 112222 23444444
Q ss_pred HccC--CCcEEEe--------cCCCCHHHHHH-HHHhCCCEEEEcHH
Q 017492 276 ATQG--RIPVFLD--------GGVRRGTDVFK-ALALGASGIFIGRP 311 (370)
Q Consensus 276 ~~~~--~ipvi~~--------GGI~~~~dv~k-alalGAd~V~igr~ 311 (370)
+..+ +++|++= .|+...-.-.+ +..+|||+|++-.+
T Consensus 136 a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 136 ARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred HHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4443 6777776 34433333333 34489999999754
No 408
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=93.34 E-value=0.53 Score=46.04 Aligned_cols=104 Identities=22% Similarity=0.233 Sum_probs=65.2
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.|-+..+.+.+.++++.++++|+++|.++-..... . ...-|. ..+ ...+
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~--~------~~~~~~---~~~------------~~gG--- 256 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR--P------GLLRSP---LAN------------ETGG--- 256 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc--c------cccccc---ccC------------CCCc---
Confidence 4678887654455567788899999999999876322110 0 000000 000 0000
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEEE-EecCCHHHHHHHHHcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs 253 (370)
++........++.++.+++.+ ++||+. .++.+.+|+...+.+|||.|.+.
T Consensus 257 -~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg 309 (327)
T cd04738 257 -LSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLY 309 (327)
T ss_pred -cCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhcc
Confidence 000001123688899999998 789874 56789999999999999999884
No 409
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=93.33 E-value=0.99 Score=39.81 Aligned_cols=64 Identities=23% Similarity=0.226 Sum_probs=45.3
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccC-CCcEEEecCCCC--------HHHHHHHHHhCCCEEEEc
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG-RIPVFLDGGVRR--------GTDVFKALALGASGIFIG 309 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~-~ipvi~~GGI~~--------~~dv~kalalGAd~V~ig 309 (370)
++.+.+.|+++|.+.+ ..+..+.+...+ ++|+++.=|-.+ -+.+..+..+|||++++.
T Consensus 19 ~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~ 85 (201)
T cd00945 19 CDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVV 85 (201)
T ss_pred HHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Confidence 5677889999998843 456666666666 788776433332 345566777999999998
Q ss_pred HHHHHH
Q 017492 310 RPVVYS 315 (370)
Q Consensus 310 r~~l~~ 315 (370)
-|+.+.
T Consensus 86 ~~~~~~ 91 (201)
T cd00945 86 INIGSL 91 (201)
T ss_pred ccHHHH
Confidence 887654
No 410
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=93.33 E-value=3.5 Score=38.80 Aligned_cols=87 Identities=22% Similarity=0.238 Sum_probs=61.1
Q ss_pred cHHHHHHHHHhc--CCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTIT--KLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi 284 (370)
+.+.++.+|+.+ +.++.+..- .+.++| +.+.+.|++.|.-- ..+..++.+.++++.. .+||.
T Consensus 115 d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP--------~~~~d~~~~~~l~~~~--~ipia 184 (265)
T cd03315 115 DVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQP--------LPADDLEGRAALARAT--DTPIM 184 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECC--------CCcccHHHHHHHHhhC--CCCEE
Confidence 456788888877 356655532 455554 45567788777431 1112456777777765 89999
Q ss_pred EecCCCCHHHHHHHHHhC-CCEEEEc
Q 017492 285 LDGGVRRGTDVFKALALG-ASGIFIG 309 (370)
Q Consensus 285 ~~GGI~~~~dv~kalalG-Ad~V~ig 309 (370)
+++.+.+..|+.+++..+ +|.|++-
T Consensus 185 ~dE~~~~~~~~~~~i~~~~~d~v~~k 210 (265)
T cd03315 185 ADESAFTPHDAFRELALGAADAVNIK 210 (265)
T ss_pred ECCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999999999876 7888874
No 411
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=93.33 E-value=0.37 Score=44.50 Aligned_cols=62 Identities=18% Similarity=0.308 Sum_probs=43.0
Q ss_pred cCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 245 AGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 245 aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.|...+.+=-.||. +.|...+.+..+.+ ..++|.-||||+++.+.+...+|||.+..|..+.
T Consensus 163 ~g~~~~YlEagsga---~~Pv~~e~v~~v~~----~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iie 224 (240)
T COG1646 163 LGMPVVYLEAGSGA---GDPVPVEMVSRVLS----DTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIE 224 (240)
T ss_pred hCCeEEEEEecCCC---CCCcCHHHHHHhhc----cceEEEcCCcCCHHHHHHHHHcCCCEEEECceee
Confidence 45555555333332 23444455544433 4599999999999999888778999999999764
No 412
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=93.31 E-value=0.58 Score=44.55 Aligned_cols=92 Identities=20% Similarity=0.360 Sum_probs=55.1
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++-|-...-... -.+.+..+++.+.+++||++.=|=.+..++++ +-.+|||+|++..|.+
T Consensus 27 i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 27 IEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 455778999999997654422111111 12345555566666888876544445555554 3448999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~ 333 (370)
+.. .++++.++++.+.+
T Consensus 107 ~~~---~~~~l~~~~~~ia~ 123 (284)
T cd00950 107 NKP---SQEGLYAHFKAIAE 123 (284)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 532 34555555444444
No 413
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.30 E-value=7.7 Score=36.95 Aligned_cols=181 Identities=20% Similarity=0.204 Sum_probs=102.4
Q ss_pred ceeecccccccccCChhhHHHHHHHHHcCCceee--cC---CCCCCHHHHh-------ccCC--CceEEEEeecCChHHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTL--SS---WSTSSVEEVA-------STGP--GIRFFQLYVYKDRNVV 138 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~--s~---~~~~~~eei~-------~~~~--~~~~~Qly~~~d~~~~ 138 (370)
|.++.|+.-.+-.+.+.-..+++-..+.|+...+ ++ +.+.+.+|.. +..+ -+.+.++- ..+-+..
T Consensus 7 ~~~~TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~-~~st~~~ 85 (289)
T PF00701_consen 7 PALITPFNADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG-ANSTEEA 85 (289)
T ss_dssp EEE---BETTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE-SSSHHHH
T ss_pred eeeeCCCCCCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc-chhHHHH
Confidence 4556666433333333345677777788876444 22 2345655532 2222 35666654 4467777
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHHH
Q 017492 139 AQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVK 218 (370)
Q Consensus 139 ~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~ 218 (370)
.++++.|++.|++++.+. .|... + . +.+-..+..+
T Consensus 86 i~~a~~a~~~Gad~v~v~--~P~~~------------~--~-----------------------------s~~~l~~y~~ 120 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVI--PPYYF------------K--P-----------------------------SQEELIDYFR 120 (289)
T ss_dssp HHHHHHHHHTT-SEEEEE--ESTSS------------S--C-----------------------------CHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEe--ccccc------------c--c-----------------------------hhhHHHHHHH
Confidence 889999999999999875 23320 0 0 0001234567
Q ss_pred HHHHhcCCcEEEEec-------CCHHHHHHHHHc-CccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 219 WLQTITKLPILVKGV-------LTAEDARIAVQA-GAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 219 ~ir~~~~~Pv~vK~v-------~~~~~a~~a~~a-G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.|.+.+++|+++=.. .+++...++.+. .+-+|..+. ..+..+.++.+...+++.|+ .|
T Consensus 121 ~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~~~nv~giK~s~----------~~~~~~~~~~~~~~~~~~v~-~G--- 186 (289)
T PF00701_consen 121 AIADATDLPIIIYNNPARTGNDLSPETLARLAKIPNVVGIKDSS----------GDLERLIQLLRAVGPDFSVF-CG--- 186 (289)
T ss_dssp HHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHTSTTEEEEEESS----------SBHHHHHHHHHHSSTTSEEE-ES---
T ss_pred HHHhhcCCCEEEEECCCccccCCCHHHHHHHhcCCcEEEEEcCc----------hhHHHHHHHhhhcccCeeee-cc---
Confidence 777778999998654 355666666663 233443322 12344555555555566544 34
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l 313 (370)
....+..++.+|+++++.|.+-+
T Consensus 187 ~d~~~~~~l~~G~~G~is~~~n~ 209 (289)
T PF00701_consen 187 DDELLLPALAAGADGFISGLANV 209 (289)
T ss_dssp SGGGHHHHHHTTSSEEEESGGGT
T ss_pred ccccccccccccCCEEEEccccc
Confidence 44557889999999999998643
No 414
>PTZ00411 transaldolase-like protein; Provisional
Probab=93.28 E-value=1.3 Score=43.48 Aligned_cols=101 Identities=14% Similarity=0.247 Sum_probs=69.6
Q ss_pred cHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCC-------------ccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~--~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~ 277 (370)
+|+=++.++.. -++++-+=.+.+...|..+.++|++.|... -||-.|+ +-+....+.++...+
T Consensus 146 T~eGi~Aa~~L~~eGI~~N~TlvFS~~QA~aaaeAGa~~ISPf--VGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 223 (333)
T PTZ00411 146 TWEGIQAAKALEKEGIHCNLTLLFSFAQAVACAQAGVTLISPF--VGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY 223 (333)
T ss_pred CHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCCEEEee--cchHHHhcccccccccccccCCchHHHHHHHHHHH
Confidence 56644444433 278888888999999999999999998764 2321111 334555666666544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+.+. .+....+|+..++.+ .+|+|.+-+.-.++..+..
T Consensus 224 k~~g~~T-~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~~ 264 (333)
T PTZ00411 224 KKHGYKT-IVMGASFRNTGEILE--LAGCDKLTISPKLLEELAN 264 (333)
T ss_pred HHcCCCe-EEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHHh
Confidence 2234 455566999999987 3899999999888876654
No 415
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=93.28 E-value=0.59 Score=44.68 Aligned_cols=91 Identities=20% Similarity=0.343 Sum_probs=55.5
Q ss_pred HHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHHH
Q 017492 240 RIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVVY 314 (370)
Q Consensus 240 ~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l~ 314 (370)
..+.+.|+++|.+.++.|-...-... -.+.+..+++.+.+++||++.=|=.+-.++++ +-.+|||+|++..|+++
T Consensus 26 ~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~ 105 (285)
T TIGR00674 26 DFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPYYN 105 (285)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCcCC
Confidence 45678999999996654432111111 22345556666667899887555445555444 33479999999999876
Q ss_pred HHHhcCHHHHHHHHHHHHH
Q 017492 315 SLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 315 ~~~~~G~~~v~~~l~~l~~ 333 (370)
.. .++++.++++.+.+
T Consensus 106 ~~---~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 106 KP---TQEGLYQHFKAIAE 121 (285)
T ss_pred CC---CHHHHHHHHHHHHh
Confidence 42 34555555444433
No 416
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=93.21 E-value=0.61 Score=44.79 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=55.5
Q ss_pred HHHHH-cCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 240 RIAVQ-AGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 240 ~~a~~-aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
+.+.+ .|+++|.+.++.|-...-... -...+..+++.+.+++||++.=|=.+-.|+++ +-.+|||+|++-.|++
T Consensus 31 ~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y 110 (293)
T PRK04147 31 RFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFY 110 (293)
T ss_pred HHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 45677 999999997764421111111 22345556666667899998655555566544 4568999999999987
Q ss_pred HHHHhcCHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEML 331 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l 331 (370)
+.. .++++.++++.+
T Consensus 111 ~~~---~~~~l~~~f~~v 125 (293)
T PRK04147 111 YPF---SFEEICDYYREI 125 (293)
T ss_pred CCC---CHHHHHHHHHHH
Confidence 642 234444444443
No 417
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=93.21 E-value=0.32 Score=49.14 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=64.9
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.|-+ +...+.++++.++++|++++.++ ++-. +...-|+.+.-..|. ++. .+.. +
T Consensus 169 ~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~-Nt~~-~~~~id~~~~~~~p~---------~~~----~~~~---g- 227 (420)
T PRK08318 169 LPVIVKLTP--NITDIREPARAAKRGGADAVSLI-NTIN-SITGVDLDRMIPMPI---------VNG----KSSH---G- 227 (420)
T ss_pred CcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEe-cccC-ccccccccccCCCce---------ecC----CCCc---c-
Confidence 578888753 33346788888999999998864 2211 100011110000000 000 0000 0
Q ss_pred HhhhcCCCCccHHHHHHHHHhc---CCcEE-EEecCCHHHHHHHHHcCccEEEEcc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT---KLPIL-VKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~---~~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.++.....+..|+.|.++++.+ ++||+ +.++.+.+||...+.+|||+|.+..
T Consensus 228 g~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 228 GYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred cccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeee
Confidence 0111111234789999999987 78987 4568999999999999999999854
No 418
>PRK12346 transaldolase A; Provisional
Probab=93.20 E-value=1.3 Score=43.17 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=69.1
Q ss_pred cHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCC-------------CccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~--~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 277 (370)
+|+-++.++.. -++++-+=.+.+.+.+..+.++|++.|... -||-.| .+.+....+.++.+..
T Consensus 135 T~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 212 (316)
T PRK12346 135 TWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY 212 (316)
T ss_pred CHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEec--ccHHHHhhhhccccccccccCCChHHHHHHHHHHH
Confidence 66655544443 278888888999999999999999998763 233111 1334555566665544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+.+..|++ ..+|+..++. + ..|+|.+-+.-.++..+..
T Consensus 213 k~~~~~T~Vm~-ASfRn~~qi~-a-laG~d~lTi~p~ll~~L~~ 253 (316)
T PRK12346 213 KQHRYETIVMG-ASFRRTEQIL-A-LAGCDRLTISPNLLKELQE 253 (316)
T ss_pred HHcCCCcEEEe-cccCCHHHHH-H-HhCCCEEeCCHHHHHHHHh
Confidence 22444555 5599999997 3 4699999999888876653
No 419
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=93.17 E-value=0.56 Score=44.90 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=55.5
Q ss_pred HHHHHHc-CccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHH
Q 017492 239 ARIAVQA-GAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPV 312 (370)
Q Consensus 239 a~~a~~a-G~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~ 312 (370)
++.+.+. |+++|.+.++.|-...-... -.+.+..+++.+.+++|||+.=|=.+-.++++ +..+|||+|++-.|+
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~ 106 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPF 106 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 3556778 99999997764422111111 22345555666667899988433333344433 445899999999998
Q ss_pred HHHHHhcCHHHHHHHHHHHHH
Q 017492 313 VYSLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 313 l~~~~~~G~~~v~~~l~~l~~ 333 (370)
++.. .++++.++++.+.+
T Consensus 107 y~~~---~~~~i~~~~~~v~~ 124 (288)
T cd00954 107 YYKF---SFEEIKDYYREIIA 124 (288)
T ss_pred CCCC---CHHHHHHHHHHHHH
Confidence 7642 35555555555544
No 420
>PLN02535 glycolate oxidase
Probab=93.15 E-value=0.69 Score=45.91 Aligned_cols=90 Identities=20% Similarity=0.333 Sum_probs=61.8
Q ss_pred HHHHHHhcCCcEEEEecC------CHHHHHHHHHcCccEEEEcc----CCccC--------------CC-----------
Q 017492 217 VKWLQTITKLPILVKGVL------TAEDARIAVQAGAAGIIVSN----HGARQ--------------LD----------- 261 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~----~gg~~--------------~~----------- 261 (370)
++++.+..+.|.++.... +.+..++|.++|+.+|++.- .|-|. ..
T Consensus 115 lEeva~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~ 194 (364)
T PLN02535 115 VEEVASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDK 194 (364)
T ss_pred HHHHHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccc
Confidence 344444456688888763 23447889999999998852 11110 00
Q ss_pred ------------CccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 262 ------------YVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 262 ------------~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
....+|+.+..+++.. ++||++ .||.+++|+.++..+|+|+|.+.
T Consensus 195 ~~~~~~~~~~~~~~~~tW~~i~~lr~~~--~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 195 GSGLEAFASETFDASLSWKDIEWLRSIT--NLPILI-KGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred cccHHHHHHhccCCCCCHHHHHHHHhcc--CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence 0123567777777654 789888 66999999999999999999885
No 421
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=93.14 E-value=0.49 Score=45.20 Aligned_cols=89 Identities=20% Similarity=0.340 Sum_probs=53.3
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++.|-...-... -.+.+..+++.+++++||++.=|=.+-.++++ +-.+|||++++..|++
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~ 107 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYY 107 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTS
T ss_pred HHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecccc
Confidence 456778999999997664422111111 22345555666667899887545445555544 3348999999999976
Q ss_pred HHHHhcCHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEM 330 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~ 330 (370)
+. ..++++.++++.
T Consensus 108 ~~---~s~~~l~~y~~~ 121 (289)
T PF00701_consen 108 FK---PSQEELIDYFRA 121 (289)
T ss_dssp SS---CCHHHHHHHHHH
T ss_pred cc---chhhHHHHHHHH
Confidence 53 234444444443
No 422
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.10 E-value=0.61 Score=43.56 Aligned_cols=83 Identities=31% Similarity=0.376 Sum_probs=56.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCC-H-
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRR-G- 292 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~-~- 292 (370)
+.|+++-++-+.-.|+.+.++|.++|.+|+++-. ..|.+.-+++ .+.+|.+.+ ++||++|+ |..+ +
T Consensus 8 ~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~--~iPv~vD~d~GyG~~~~ 85 (238)
T PF13714_consen 8 GKPLVLPNVWDALSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV--SIPVIVDADTGYGNDPE 85 (238)
T ss_dssp SSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS--SSEEEEE-TTTSSSSHH
T ss_pred CCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh--cCcEEEEcccccCchhH
Confidence 4799999999999999999999999999864311 2444444443 445555555 89999987 7766 4
Q ss_pred ---HHHHHHHHhCCCEEEEc
Q 017492 293 ---TDVFKALALGASGIFIG 309 (370)
Q Consensus 293 ---~dv~kalalGAd~V~ig 309 (370)
..+.+...+|+.++.|-
T Consensus 86 ~v~~tv~~~~~aG~agi~IE 105 (238)
T PF13714_consen 86 NVARTVRELERAGAAGINIE 105 (238)
T ss_dssp HHHHHHHHHHHCT-SEEEEE
T ss_pred HHHHHHHHHHHcCCcEEEee
Confidence 34455666899999884
No 423
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.00 E-value=0.72 Score=44.44 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=65.3
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.|- .+...+.++++.++++|+++++++ ++- .+...-|+.+. . |. .. .+. .+. .+
T Consensus 169 ~Pv~vKl~--~~~~~~~~~a~~~~~~Gadgi~~~-Nt~-~~~~~id~~~~-~-~~-~~------~~~----~~~---~g- 227 (299)
T cd02940 169 IPVIAKLT--PNITDIREIARAAKEGGADGVSAI-NTV-NSLMGVDLDGT-P-PA-PG------VEG----KTT---YG- 227 (299)
T ss_pred CCeEEECC--CCchhHHHHHHHHHHcCCCEEEEe-ccc-ccccccccccC-C-cc-cc------ccC----CCC---cC-
Confidence 46777764 344567788889999999998864 211 11000010000 0 00 00 000 000 00
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEEEE-ecCCHHHHHHHHHcCccEEEEcc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.++.....+..|+.+.++++.+ ++||+.= ++.+.+|+.+.+.+|||+|.+..
T Consensus 228 g~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 228 GYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEce
Confidence 0111112334799999999999 8998764 57999999999999999998853
No 424
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=92.99 E-value=0.66 Score=44.93 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=62.1
Q ss_pred HHHHHHHHhcC--CcEEEEecCC----HHHHHHHHHc---CccEEEEccCCccCCCCccchHHHHHHHHHHc---c-CCC
Q 017492 215 KDVKWLQTITK--LPILVKGVLT----AEDARIAVQA---GAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRI 281 (370)
Q Consensus 215 ~~i~~ir~~~~--~Pv~vK~v~~----~~~a~~a~~a---G~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~i 281 (370)
+.++.+++..+ .|+.+ .+-+ .++|..+.++ ++|.|.+.|.+++ .|. ..+.+.++++++ + .++
T Consensus 172 ~A~~~~~~~~p~~~~i~v-evdt~~~~v~eal~~~~~~~~~~d~I~lDn~~~~---~G~-~~~~~~~~~~~l~~~g~~~~ 246 (302)
T cd01571 172 EAWKAFDETYPEDVPRIA-LIDTFNDEKEEALKAAKALGDKLDGVRLDTPSSR---RGV-FRYLIREVRWALDIRGYKHV 246 (302)
T ss_pred HHHHHHHHHCCCcCCeEE-EEeecCcchHHHHHHHHHhCCCCcEEEECCCCCC---CCC-HHHHHHHHHHHHHhCCCCCe
Confidence 35777777664 45543 3333 3366666666 4899999886432 111 233444444443 2 467
Q ss_pred cEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 282 PVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 282 pvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
.|+++||| +.+.+.+....|+|.+.+|+...
T Consensus 247 ~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~ 277 (302)
T cd01571 247 KIFVSGGL-DEEDIKELEDVGVDAFGVGTAIS 277 (302)
T ss_pred EEEEeCCC-CHHHHHHHHHcCCCEEECCcccC
Confidence 89999999 78999988889999999999764
No 425
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=92.93 E-value=1.6 Score=44.75 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=54.5
Q ss_pred cHHHHHHHHHhcC--Cc-EEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 213 SWKDVKWLQTITK--LP-ILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 213 ~~~~i~~ir~~~~--~P-v~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.+...++....+ .. |.--|+.+++|++.+.. |+|++-|+.. +-..+.....+.++.. ..+.| -|+
T Consensus 196 d~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~-~~davLiG~~----lm~~~d~~~~~~~L~~---~~vKI---CGi 264 (454)
T PRK09427 196 DLNRTRELAPLIPADVIVISESGIYTHAQVRELSP-FANGFLIGSS----LMAEDDLELAVRKLIL---GENKV---CGL 264 (454)
T ss_pred CHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh-cCCEEEECHH----HcCCCCHHHHHHHHhc---ccccc---CCC
Confidence 4455666666653 22 22246789999999865 7999988432 1112223334444322 23333 479
Q ss_pred CCHHHHHHHHHhCCCEEEE
Q 017492 290 RRGTDVFKALALGASGIFI 308 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~i 308 (370)
++.+|+..+..+|||++++
T Consensus 265 t~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 265 TRPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred CCHHHHHHHHhCCCCEEee
Confidence 9999999999999999987
No 426
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=92.90 E-value=1.6 Score=42.50 Aligned_cols=101 Identities=12% Similarity=0.181 Sum_probs=69.0
Q ss_pred cHHHHHHHHHh--cCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCC-------------ccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTI--TKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDY-------------VPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~--~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~-------------~~~~~~~l~~i~~~~ 277 (370)
+|+=++.++.. -++++-+=.+.+.+.+..+.++|++.|... -||-.|| ..+.+..+.+|.+.+
T Consensus 134 T~eGi~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPF--VgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~ 211 (317)
T TIGR00874 134 TWEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPF--VGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYY 211 (317)
T ss_pred CHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEee--cchHhHhhhhccCccccccccCchHHHHHHHHHHH
Confidence 56654444433 278888888999999999999999998864 2222111 134555566665544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHHh
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAA 318 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~~ 318 (370)
+.+..|+ ...+|+..++.+ ..|+|.+-+.-.++..+..
T Consensus 212 k~~g~~T~Im-~ASfRn~~qv~~--laG~d~~Ti~p~ll~~L~~ 252 (317)
T TIGR00874 212 KKHGYPTEVM-GASFRNKEEILA--LAGCDRLTISPALLDELKE 252 (317)
T ss_pred HHcCCCcEEE-eeccCCHHHHHH--HHCCCeEeCCHHHHHHHHh
Confidence 2344455 456999999986 5699999999888776643
No 427
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=92.88 E-value=4 Score=38.50 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=34.1
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec-CCCCHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-GVRRGTDV 295 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G-GI~~~~dv 295 (370)
++++.+.++|||.|.+- +++. +...+|.+.+ ++|+|.-| |-.+-.++
T Consensus 162 ~ra~a~~~AGA~~i~lE---------~v~~-~~~~~i~~~v--~iP~igiGaG~~~dgqv 209 (254)
T cd06557 162 EDALALEEAGAFALVLE---------CVPA-ELAKEITEAL--SIPTIGIGAGPDCDGQV 209 (254)
T ss_pred HHHHHHHHCCCCEEEEc---------CCCH-HHHHHHHHhC--CCCEEEeccCCCCCcee
Confidence 56788899999999983 2443 6788888887 79999776 44443443
No 428
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.87 E-value=0.7 Score=42.02 Aligned_cols=73 Identities=26% Similarity=0.307 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCH-------------HHHHHHHH
Q 017492 234 LTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRG-------------TDVFKALA 300 (370)
Q Consensus 234 ~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~-------------~dv~kala 300 (370)
.+.+++..|.+.|||-|.+..+- ...+-.|+...+..+++.. ++||.+.=--|.+ +|+..+..
T Consensus 8 ~s~~~a~~A~~~GAdRiELc~~l--~~GGlTPS~g~i~~~~~~~--~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 8 ESLEDALAAEAGGADRIELCSNL--EVGGLTPSLGLIRQAREAV--DIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SSHHHHHHHHHTT-SEEEEEBTG--GGT-B---HHHHHHHHHHT--TSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEECCCc--cCCCcCcCHHHHHHHHhhc--CCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999986531 1112246677888887765 7888775222222 57777888
Q ss_pred hCCCEEEEcH
Q 017492 301 LGASGIFIGR 310 (370)
Q Consensus 301 lGAd~V~igr 310 (370)
+|||++.+|-
T Consensus 84 ~GadG~VfG~ 93 (201)
T PF03932_consen 84 LGADGFVFGA 93 (201)
T ss_dssp TT-SEEEE--
T ss_pred cCCCeeEEEe
Confidence 9999999994
No 429
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=92.84 E-value=1.6 Score=41.48 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHHH----HHHHHcCccEEEEccCCccCCC-Cccc--hHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAEDA----RIAVQAGAAGIIVSNHGARQLD-YVPA--TIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~a----~~a~~aG~d~I~vs~~gg~~~~-~~~~--~~~~l~~i~~~~~~~ipv 283 (370)
+.+.++++ ..++.||++|.. .+.++. +.+...|-.-+.+.-.|++... .... .+..++.+++.. .+||
T Consensus 123 n~~LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~--~~pV 199 (266)
T PRK13398 123 NFELLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELS--HLPI 199 (266)
T ss_pred CHHHHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhcc--CCCE
Confidence 44567777 457999999975 366664 3445678766666545554332 1222 233455555443 6899
Q ss_pred EEecCCCC------HHHHHHHHHhCCCEEEEcHHH
Q 017492 284 FLDGGVRR------GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 284 i~~GGI~~------~~dv~kalalGAd~V~igr~~ 312 (370)
+.|..=.. ......|+++||+++++-+-+
T Consensus 200 ~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 200 IVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred EEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 99643322 466777889999999998754
No 430
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=92.77 E-value=0.89 Score=45.18 Aligned_cols=42 Identities=26% Similarity=0.486 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+|+.|..+++.- ++||++ .||.+++|+.+++.+|+|+|.++.
T Consensus 212 tW~di~wlr~~~--~~Piiv-KgV~~~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 212 SWKDVQWLQTIT--KLPILV-KGVLTGEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred CHHHHHHHHhcc--CCCEEe-ecCCCHHHHHHHHHcCCCEEEECC
Confidence 566777777654 799988 558899999999999999999875
No 431
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=92.71 E-value=4.9 Score=36.42 Aligned_cols=125 Identities=18% Similarity=0.073 Sum_probs=74.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.|.....+.++++.+.|++.+-+.+- | + . +. .+..+
T Consensus 13 ~~~~~~~~~~~~~~~~G~~~i~l~~~---------d---~------~-----------------------~~---~~~~~ 48 (220)
T PRK05581 13 ADFARLGEEVKAVEAAGADWIHVDVM---------D---G------H-----------------------FV---PNLTI 48 (220)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCc---------c---C------C-----------------------cC---CCcCc
Confidence 46667778899999999998876310 0 0 0 00 01124
Q ss_pred cHHHHHHHHHhcCCcEEE--EecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 213 SWKDVKWLQTITKLPILV--KGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~v--K~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
..+.++++++.++.|+-+ +.-...+....+.++|+|+|.+ |++.. ......+..+++ . .+.+..+=+-.
T Consensus 49 ~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v--h~~~~----~~~~~~~~~~~~-~--~~~~g~~~~~~ 119 (220)
T PRK05581 49 GPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF--HVEAS----EHIHRLLQLIKS-A--GIKAGLVLNPA 119 (220)
T ss_pred CHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE--eeccc----hhHHHHHHHHHH-c--CCEEEEEECCC
Confidence 567888888776545423 3222334567778999999998 65420 111223333332 2 44444444556
Q ss_pred CHHHHHHHHHhCCCEEEEcH
Q 017492 291 RGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr 310 (370)
+..+..+.+..++|.+.++.
T Consensus 120 t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 120 TPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred CCHHHHHHHHhhCCEEEEEE
Confidence 66777788877899888875
No 432
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.61 E-value=0.59 Score=45.68 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=48.9
Q ss_pred HHHHHHHHcCc--cEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEc
Q 017492 237 EDARIAVQAGA--AGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIG 309 (370)
Q Consensus 237 ~~a~~a~~aG~--d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~ig 309 (370)
+.+..++++|+ |.|.+....| ......+.+.++++.. +++||++ |.|.|.+++..++.+|||++.+|
T Consensus 100 ~~~~~Lv~ag~~~d~i~iD~a~g----h~~~~~e~I~~ir~~~-p~~~vi~-g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITIDIAHG----HSDSVINMIQHIKKHL-PETFVIA-GNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC----chHHHHHHHHHHHhhC-CCCeEEE-EecCCHHHHHHHHHcCcCEEEEC
Confidence 55788899965 9999964322 1234556677777765 2456555 66889999999999999999877
No 433
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=92.60 E-value=1.4 Score=41.07 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=33.5
Q ss_pred ccHHHHHHHHHhcCCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.+|+.|++++ .++||+.= ++.+.+++..+++.|+|+|.+.
T Consensus 180 ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 180 ADLKKIRDIS--TELFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred CcHHHHHHhc--CCCEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 3678888887 68998764 4689999999999999999884
No 434
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.49 E-value=1.3 Score=42.74 Aligned_cols=111 Identities=21% Similarity=0.182 Sum_probs=63.2
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhh
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERA--GFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGL 200 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~--G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 200 (370)
-|.++.|-+..+.+.+.++++.+.+. |++++.++ ++-..+....-.+....++..... +..++
T Consensus 158 iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~-Nt~~~~~~id~~~~~~~~~~~~~~-------------gG~SG- 222 (294)
T cd04741 158 IPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT-NTLGNGLVLDPERETVVLKPKTGF-------------GGLAG- 222 (294)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE-ccCCccccccCCCCCcccCCCCCC-------------CCcCc-
Confidence 57888887666666677788888787 88888753 221110000000000000000000 00000
Q ss_pred HHHhhhcCCCCccHHHHHHHHHhcC--CcEEEE-ecCCHHHHHHHHHcCccEEEEcc
Q 017492 201 AAYVAGQIDRSLSWKDVKWLQTITK--LPILVK-GVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 201 ~~~~~~~~d~~~~~~~i~~ir~~~~--~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+ ....++.++++++.++ +||+.= ++.+.+|+...+.+|||+|.+..
T Consensus 223 -~~i-----~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~t 273 (294)
T cd04741 223 -AYL-----HPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGT 273 (294)
T ss_pred -hhh-----HHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEch
Confidence 000 1125667888888884 897754 57999999999999999999853
No 435
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.48 E-value=4.5 Score=35.49 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
..++.++++++..++||++-|..+.+.+..+.++|+|++.++
T Consensus 137 ~~~~~~~~~~~~~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 137 LGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 468888998887889999888778899999999999999885
No 436
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=92.46 E-value=0.81 Score=43.84 Aligned_cols=92 Identities=20% Similarity=0.343 Sum_probs=55.0
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccc-hHHHHHHHHHHccCCCcEEEecCCCCHHHHHH----HHHhCCCEEEEcHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPA-TIMALEEVVKATQGRIPVFLDGGVRRGTDVFK----ALALGASGIFIGRPVV 313 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~-~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~k----alalGAd~V~igr~~l 313 (370)
++.+.+.|+++|.+.++-|-...-... -...+..+++.+.+++||++.=|=.+-.++++ +-.+|||+|++..|++
T Consensus 28 i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 28 VDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred HHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 355778999999986654422111121 22345556666667889876444334445444 3347999999999987
Q ss_pred HHHHhcCHHHHHHHHHHHHH
Q 017492 314 YSLAAEGEKGVRRVLEMLRE 333 (370)
Q Consensus 314 ~~~~~~G~~~v~~~l~~l~~ 333 (370)
+.. .++++.++++.+.+
T Consensus 108 ~~~---~~~~i~~~~~~ia~ 124 (292)
T PRK03170 108 NKP---TQEGLYQHFKAIAE 124 (292)
T ss_pred CCC---CHHHHHHHHHHHHh
Confidence 532 35555555555443
No 437
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=92.35 E-value=1 Score=42.13 Aligned_cols=84 Identities=17% Similarity=0.099 Sum_probs=57.1
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHHH----HHHHHHccCCCcEEEecCCCCH---H
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMAL----EEVVKATQGRIPVFLDGGVRRG---T 293 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~l----~~i~~~~~~~ipvi~~GGI~~~---~ 293 (370)
+-|+++-++-+.-.|+.+.++|+|.|.++++++. ..|.+.-+++.+ ..|.+.. ..+||++|.--.++ +
T Consensus 11 ~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~-~~~pviaD~~~G~g~~~~ 89 (240)
T cd06556 11 KERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGA-PLALIVADLPFGAYGAPT 89 (240)
T ss_pred CCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhC-CCCCEEEeCCCCCCcCHH
Confidence 5788888888899999999999999999875432 123444444433 3333332 24799999744333 5
Q ss_pred H----HHHHHHhCCCEEEEc
Q 017492 294 D----VFKALALGASGIFIG 309 (370)
Q Consensus 294 d----v~kalalGAd~V~ig 309 (370)
+ +.+.+..||++|-|-
T Consensus 90 ~~~~~~~~l~~aGa~gv~iE 109 (240)
T cd06556 90 AAFELAKTFMRAGAAGVKIE 109 (240)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 5 455667999999993
No 438
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=92.26 E-value=2.1 Score=40.57 Aligned_cols=97 Identities=24% Similarity=0.324 Sum_probs=61.3
Q ss_pred cHHHHHHHHHhcCCcEEEEec-C-CHHHH----HHHHHcCccEEEEccCCccCCCC---ccchHHHHHHHHHHccCCCcE
Q 017492 213 SWKDVKWLQTITKLPILVKGV-L-TAEDA----RIAVQAGAAGIIVSNHGARQLDY---VPATIMALEEVVKATQGRIPV 283 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~-~~~~a----~~a~~aG~d~I~vs~~gg~~~~~---~~~~~~~l~~i~~~~~~~ipv 283 (370)
....++.+. .+++||++|.. . ++++. ..+.+.|.+-|.+.-.|-+..+. -...+..+..+++.. .+||
T Consensus 121 n~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~--~~pV 197 (260)
T TIGR01361 121 NFELLKEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKET--HLPI 197 (260)
T ss_pred CHHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh--CCCE
Confidence 445667765 46999999975 3 67664 44456888777764333333211 123556777777654 6999
Q ss_pred EEec----CCCC--HHHHHHHHHhCCCEEEEcHHH
Q 017492 284 FLDG----GVRR--GTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 284 i~~G----GI~~--~~dv~kalalGAd~V~igr~~ 312 (370)
+.|. |.|. ..-...|+++||+++++-+-+
T Consensus 198 ~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 198 IVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred EEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 9943 3222 233446888999999988744
No 439
>PRK05269 transaldolase B; Provisional
Probab=92.22 E-value=1.9 Score=41.99 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=69.9
Q ss_pred cHHHHHHHHHhc--CCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCC-------------CccchHHHHHHHHHHc
Q 017492 213 SWKDVKWLQTIT--KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLD-------------YVPATIMALEEVVKAT 277 (370)
Q Consensus 213 ~~~~i~~ir~~~--~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~-------------~~~~~~~~l~~i~~~~ 277 (370)
+|+=++.++... ++++-+=.+.+.+.+..+.++|++.|... -||-.| .+.+.+..+.++.+..
T Consensus 136 T~eGi~A~~~L~~~GI~vn~TlvFs~~Qa~~aa~AGa~~ISPf--VgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 213 (318)
T PRK05269 136 TWEGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPF--VGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYY 213 (318)
T ss_pred CHHHHHHHHHHHHcCCceeEeEecCHHHHHHHHHcCCCEEEee--ccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHH
Confidence 566544444332 78888888999999999999999988764 222111 1334555666665544
Q ss_pred ---cCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHHHHHH
Q 017492 278 ---QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLA 317 (370)
Q Consensus 278 ---~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l~~~~ 317 (370)
+.+..|++. .+|+..++.+ ..|+|.|-+.-.++..+.
T Consensus 214 k~~~~~t~im~A-Sfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 214 KKHGYKTVVMGA-SFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred HHcCCCceEEee-ccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 235666664 6999999986 569999999988887765
No 440
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=92.14 E-value=3.2 Score=39.42 Aligned_cols=47 Identities=28% Similarity=0.356 Sum_probs=33.6
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec-CCCCHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-GVRRGTDV 295 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G-GI~~~~dv 295 (370)
++++.+.++|||.|.+- +++. +...+|.+.+ ++|+|.-| |-.+-.++
T Consensus 165 ~ra~a~~eAGA~~i~lE---------~v~~-~~~~~i~~~l--~iP~igiGaG~~~dgqv 212 (264)
T PRK00311 165 EDAKALEEAGAFALVLE---------CVPA-ELAKEITEAL--SIPTIGIGAGPDCDGQV 212 (264)
T ss_pred HHHHHHHHCCCCEEEEc---------CCCH-HHHHHHHHhC--CCCEEEeccCCCCCcee
Confidence 56788899999999983 2444 6778888877 79999766 44333333
No 441
>PLN02411 12-oxophytodienoate reductase
Probab=92.14 E-value=7.6 Score=38.97 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=45.7
Q ss_pred cceeEcCeeecCceeeccccccccc--CC-hhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceEEEEeecCChHH
Q 017492 61 MNTTVLGFKISMPIMIAPTAMQKMA--HP-EGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRFFQLYVYKDRNV 137 (370)
Q Consensus 61 ~s~~l~g~~l~~Pi~iapm~~~~~~--~~-~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~~Qly~~~d~~~ 137 (370)
...+|.+.++++-|++|||+..... .+ +-.+..-+.-++-| .+++++....+.+- ...+ ....+|.....+.
T Consensus 14 ~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g--~~~~--~~~gi~~d~~i~~ 88 (391)
T PLN02411 14 SPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTA--PGFP--HVPGIYSDEQVEA 88 (391)
T ss_pred CCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECccc--CcCC--CCCccCCHHHHHH
Confidence 3567888999999999999643211 11 11233333333345 66666543322211 1111 1122332222345
Q ss_pred HHHHHHHHHHcCCcEE
Q 017492 138 VAQLVRRAERAGFKAI 153 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai 153 (370)
+.++++.+.+.|++++
T Consensus 89 ~~~l~~avH~~G~~i~ 104 (391)
T PLN02411 89 WKKVVDAVHAKGSIIF 104 (391)
T ss_pred HHHHHHHHHhcCCEEE
Confidence 5677777788888753
No 442
>TIGR03586 PseI pseudaminic acid synthase.
Probab=92.05 E-value=13 Score=36.44 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=66.9
Q ss_pred cHHHHHHHHHhcCCcEEEEec-CCHHHHH----HHHHcCccEEEEccCCccCCCCc--cchHHHHHHHHHHccCCCcEEE
Q 017492 213 SWKDVKWLQTITKLPILVKGV-LTAEDAR----IAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVFL 285 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~----~a~~aG~d~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvi~ 285 (370)
.+..++.+.+ +++||++|.. .+.++.. .+.+.|..-|++- |.-+..... ...+..+..+++.. .+||..
T Consensus 123 n~~LL~~va~-~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~Ll-hC~s~YP~~~~~~nL~~i~~lk~~f--~~pVG~ 198 (327)
T TIGR03586 123 DLPLIRYVAK-TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLL-KCTSSYPAPLEDANLRTIPDLAERF--NVPVGL 198 (327)
T ss_pred CHHHHHHHHh-cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEE-ecCCCCCCCcccCCHHHHHHHHHHh--CCCEEe
Confidence 5677888766 5999999965 5665543 3446787544441 322211111 12445666666655 689955
Q ss_pred ecCCCCH-HHHHHHHHhCCCEEEEcHHHHHHHHhcCHHH----HHHHHHHHHHHHHHHHHHcCCC
Q 017492 286 DGGVRRG-TDVFKALALGASGIFIGRPVVYSLAAEGEKG----VRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 286 ~GGI~~~-~dv~kalalGAd~V~igr~~l~~~~~~G~~~----v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+. =..| .-...|+++||+ +|=+-|-..-...|.+. --.-++.|.+.++..-..+|..
T Consensus 199 SD-Ht~G~~~~~aAva~GA~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~ 260 (327)
T TIGR03586 199 SD-HTLGILAPVAAVALGAC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEV 260 (327)
T ss_pred eC-CCCchHHHHHHHHcCCC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 54 1111 233457789998 44443322111122211 0123456667777777777753
No 443
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=92.05 E-value=0.94 Score=42.48 Aligned_cols=71 Identities=28% Similarity=0.296 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHcCccEEEEccC---CccCCCCccchHHHHHHHHHHccCCCcEEEe-----cCCCC--------HHHHH
Q 017492 233 VLTAEDARIAVQAGAAGIIVSNH---GARQLDYVPATIMALEEVVKATQGRIPVFLD-----GGVRR--------GTDVF 296 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~~---gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~-----GGI~~--------~~dv~ 296 (370)
+.+.+++..|.+.|||-|.+... ||. .|+...+..+++.+ ++||.+. |++.. -.|+.
T Consensus 8 v~s~~~a~~A~~~GAdRiELc~~L~~GGl-----TPS~g~i~~~~~~~--~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~ 80 (248)
T PRK11572 8 CYSMECALTAQQAGADRIELCAAPKEGGL-----TPSLGVLKSVRERV--TIPVHPIIRPRGGDFCYSDGEFAAMLEDIA 80 (248)
T ss_pred ECCHHHHHHHHHcCCCEEEEccCcCCCCc-----CCCHHHHHHHHHhc--CCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998642 332 46677788887776 7887764 33322 24677
Q ss_pred HHHHhCCCEEEEcH
Q 017492 297 KALALGASGIFIGR 310 (370)
Q Consensus 297 kalalGAd~V~igr 310 (370)
.+..+|||+|.+|-
T Consensus 81 ~~~~~GadGvV~G~ 94 (248)
T PRK11572 81 TVRELGFPGLVTGV 94 (248)
T ss_pred HHHHcCCCEEEEee
Confidence 77779999999994
No 444
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.02 E-value=0.77 Score=44.26 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=59.5
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc-----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCCHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR-----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGT 293 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~-----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~~~ 293 (370)
+.|+++-++-+.-.|+.+.++|.+++.+|+++.. ..|.+.-+++ .+.+|...+ ++||++|. |..+..
T Consensus 15 ~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~dtGyG~~~ 92 (294)
T TIGR02319 15 PEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAV--DVPVIMDADAGYGNAM 92 (294)
T ss_pred CCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcH
Confidence 5688888888999999999999999999764321 1344444443 344444444 89999987 777766
Q ss_pred HH----HHHHHhCCCEEEEc
Q 017492 294 DV----FKALALGASGIFIG 309 (370)
Q Consensus 294 dv----~kalalGAd~V~ig 309 (370)
++ .++..+||.++.|-
T Consensus 93 ~v~r~V~~~~~aGaagi~IE 112 (294)
T TIGR02319 93 SVWRATREFERVGIVGYHLE 112 (294)
T ss_pred HHHHHHHHHHHcCCeEEEEE
Confidence 65 45556999998883
No 445
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=91.99 E-value=0.39 Score=44.40 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHhc-CCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 212 LSWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 212 ~~~~~i~~ir~~~-~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..++.++.+++.+ +.|+++.+ +.+.++++.+.++|+|.|++++
T Consensus 165 v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 209 (223)
T TIGR01768 165 VPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGN 209 (223)
T ss_pred cCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECc
Confidence 4588899999998 89998875 6899999999999999999965
No 446
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=91.92 E-value=0.38 Score=44.38 Aligned_cols=42 Identities=29% Similarity=0.464 Sum_probs=37.7
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTIT-KLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
..+.++.+++.+ +.|+++.+ +.++++|+.+.++|+|.|++++
T Consensus 162 ~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs 205 (219)
T cd02812 162 PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGN 205 (219)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 567899999998 99999986 6899999999999999999965
No 447
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=91.82 E-value=1.3 Score=42.89 Aligned_cols=107 Identities=25% Similarity=0.345 Sum_probs=66.7
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.++.|-+ +.+.+.++++.++++|+++++++ ++-..+-+ -|+... +....+ ..+..++ .
T Consensus 162 ~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~-NT~~~~~~-id~~~~-----~~~~~~---------~~GGLSG--~ 221 (310)
T COG0167 162 VPVFVKLAP--NITDIDEIAKAAEEAGADGLIAI-NTTKSGMK-IDLETK-----KPVLAN---------ETGGLSG--P 221 (310)
T ss_pred CceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEE-eecccccc-cccccc-----ccccCc---------CCCCcCc--c
Confidence 577777754 78888999999999999999875 33221110 111100 000000 0000001 1
Q ss_pred HhhhcCCCCccHHHHHHHHHhcC--CcEE-EEecCCHHHHHHHHHcCccEEEEcc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTITK--LPIL-VKGVLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~~--~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
.+ .+...+.|+++++.++ +||+ +.|+.+.+||..-+.+||+.+.|..
T Consensus 222 ~i-----kp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~T 271 (310)
T COG0167 222 PL-----KPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGT 271 (310)
T ss_pred cc-----hHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHHcCCchheeee
Confidence 11 1236678899999875 9966 4568999999999999999999854
No 448
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.74 E-value=1.6 Score=39.07 Aligned_cols=79 Identities=29% Similarity=0.290 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCC-cEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHH
Q 017492 215 KDVKWLQTITKL-PILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGT 293 (370)
Q Consensus 215 ~~i~~ir~~~~~-Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~ 293 (370)
+.++.+++..+. -+....+...++++.+.++|+|+|++. |-+ + .+.++++.. .++.+. | ..|..
T Consensus 52 e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p-~~~------~----~~~~~~~~~--~~~~i~-G-~~t~~ 116 (187)
T PRK07455 52 ELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTP-HVD------P----ELIEAAVAQ--DIPIIP-G-ALTPT 116 (187)
T ss_pred HHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECC-CCC------H----HHHHHHHHc--CCCEEc-C-cCCHH
Confidence 446666655432 122234567799999999999999552 211 1 222233333 455443 4 99999
Q ss_pred HHHHHHHhCCCEEEE
Q 017492 294 DVFKALALGASGIFI 308 (370)
Q Consensus 294 dv~kalalGAd~V~i 308 (370)
++.++..+|||.|.+
T Consensus 117 e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 117 EIVTAWQAGASCVKV 131 (187)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999999987
No 449
>TIGR03586 PseI pseudaminic acid synthase.
Probab=91.67 E-value=4.7 Score=39.48 Aligned_cols=81 Identities=10% Similarity=0.149 Sum_probs=58.9
Q ss_pred HHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHH
Q 017492 217 VKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVF 296 (370)
Q Consensus 217 i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~ 296 (370)
+.+.++..+++++ =.+.+.+.+..+.+.|++.+.|... -...+..|..+.+. ..||+.+-|..+-+++.
T Consensus 82 L~~~~~~~Gi~~~-stpfd~~svd~l~~~~v~~~KI~S~-------~~~n~~LL~~va~~---gkPvilstG~~t~~Ei~ 150 (327)
T TIGR03586 82 LFERAKELGLTIF-SSPFDETAVDFLESLDVPAYKIASF-------EITDLPLIRYVAKT---GKPIIMSTGIATLEEIQ 150 (327)
T ss_pred HHHHHHHhCCcEE-EccCCHHHHHHHHHcCCCEEEECCc-------cccCHHHHHHHHhc---CCcEEEECCCCCHHHHH
Confidence 5555666788875 4567888899999999999999532 12345566666543 78999999999999998
Q ss_pred HHHH----hCCCEEEE
Q 017492 297 KALA----LGASGIFI 308 (370)
Q Consensus 297 kala----lGAd~V~i 308 (370)
.|+. .|..-|.+
T Consensus 151 ~Av~~i~~~g~~~i~L 166 (327)
T TIGR03586 151 EAVEACREAGCKDLVL 166 (327)
T ss_pred HHHHHHHHCCCCcEEE
Confidence 8775 46643444
No 450
>PLN02334 ribulose-phosphate 3-epimerase
Probab=91.66 E-value=9.4 Score=35.13 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+..+.++++++.++.|+-+-.. .++++ ...+.++|+|+|.+ |.+. +........+..+++. ..-+-.+-.-
T Consensus 52 ~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~v--H~~q--~~~d~~~~~~~~i~~~---g~~iGls~~~ 124 (229)
T PLN02334 52 IGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTF--HIEQ--ASTIHLHRLIQQIKSA---GMKAGVVLNP 124 (229)
T ss_pred cCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEE--eecc--ccchhHHHHHHHHHHC---CCeEEEEECC
Confidence 3457889999888777666554 34544 77889999999988 6551 0011223444544432 3323333322
Q ss_pred CCHHHHHHHHHhC--CCEEEEcH
Q 017492 290 RRGTDVFKALALG--ASGIFIGR 310 (370)
Q Consensus 290 ~~~~dv~kalalG--Ad~V~igr 310 (370)
.+..+..+.+.-+ +|.+++|.
T Consensus 125 ~t~~~~~~~~~~~~~~Dyi~~~~ 147 (229)
T PLN02334 125 GTPVEAVEPVVEKGLVDMVLVMS 147 (229)
T ss_pred CCCHHHHHHHHhccCCCEEEEEE
Confidence 3556666666544 99999985
No 451
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=91.61 E-value=3.6 Score=36.31 Aligned_cols=43 Identities=35% Similarity=0.453 Sum_probs=37.3
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEccC
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSNH 255 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~~ 255 (370)
-.+.++++.++++.||+..| +.+.|++..|+++|+-++..||.
T Consensus 132 ~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs~~ 175 (181)
T COG1954 132 MPKVIKEITEKTHIPIIAGGLIETEEEVREALKAGAVAVSTSNT 175 (181)
T ss_pred cHHHHHHHHHhcCCCEEeccccccHHHHHHHHHhCcEEEeecch
Confidence 45689999999999999887 47889999999999999887763
No 452
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=91.44 E-value=1.8 Score=42.59 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCcc
Q 017492 134 DRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLS 213 (370)
Q Consensus 134 d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 213 (370)
+.+...++++++++.|++.+.|+...... +. . ...+.+.
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-------------~~-~---------------------------~~~~~~~ 263 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVP-------------AR-I---------------------------DVYPGYQ 263 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------------CC-C---------------------------CCCcccc
Confidence 45666778888888899988887543110 00 0 0011235
Q ss_pred HHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcC-ccEEEE
Q 017492 214 WKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG-~d~I~v 252 (370)
|+..+++++.+++||+.-+ +.+++++..+++.| +|.|.+
T Consensus 264 ~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 264 VPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFI 304 (337)
T ss_pred HHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHh
Confidence 7778899999999987765 47899999999877 999865
No 453
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=91.43 E-value=6.5 Score=35.28 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=36.5
Q ss_pred cHHHHHHHHHhcC-CcEEEEecCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITK-LPILVKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~-~Pv~vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.++.++++++..+ +||++=|..+.+++..+.++|+|+|.++
T Consensus 147 g~~~~~~~~~~~~~~~v~a~GGI~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 147 GLEGLREIRAAVGDIPIVAIGGITPENAPEVLEAGADGVAVV 188 (212)
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 4888999998886 9999888778999999999999999884
No 454
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=91.27 E-value=1.4 Score=42.41 Aligned_cols=83 Identities=23% Similarity=0.199 Sum_probs=58.0
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCCHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 294 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~~~d 294 (370)
+.++.+-++.+.-.|+.+.++|.++|.+|++|-. ..|.+.-+++ .+.+|.+.+ ++||++|. |..+..+
T Consensus 14 ~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~--~lPv~aD~d~GyG~~~~ 91 (290)
T TIGR02321 14 GRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV--SIPLIADIDTGFGNAVN 91 (290)
T ss_pred CCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhcc--CCCEEEECCCCCCCcHH
Confidence 4567777888889999999999999999875321 2355544443 344555555 89999986 6665555
Q ss_pred H----HHHHHhCCCEEEEc
Q 017492 295 V----FKALALGASGIFIG 309 (370)
Q Consensus 295 v----~kalalGAd~V~ig 309 (370)
+ .++...|+.++.|-
T Consensus 92 v~~tV~~~~~aGvagi~IE 110 (290)
T TIGR02321 92 VHYVVPQYEAAGASAIVME 110 (290)
T ss_pred HHHHHHHHHHcCCeEEEEe
Confidence 5 34556899888883
No 455
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=91.19 E-value=0.48 Score=43.24 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=36.7
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs 253 (370)
+.+.++.+++.+++|+++.+ +.++++++.+.++|+|+|+++
T Consensus 164 ~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 164 NPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 57789999999999999986 689999999999999999873
No 456
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=91.03 E-value=2.9 Score=41.04 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=35.7
Q ss_pred CCccHHHHHHHHHhc-CCcEEEE-ecCCHHHHHHHHHcCccEEEEc
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVK-GVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK-~v~~~~~a~~a~~aG~d~I~vs 253 (370)
++..|+.++++++.+ ++||+.= ++.+++++..+.+ |+|+|.++
T Consensus 189 ~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~-~aDgVmIG 233 (333)
T PRK11815 189 PPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ-HVDGVMIG 233 (333)
T ss_pred CCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-cCCEEEEc
Confidence 345799999999986 8998875 4789999999887 79999884
No 457
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=90.88 E-value=15 Score=35.09 Aligned_cols=109 Identities=20% Similarity=0.318 Sum_probs=69.6
Q ss_pred CHHHHHHHHH-cCccEEEEcc---CCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC-CHHHHHHHHHhCCCEEEEc
Q 017492 235 TAEDARIAVQ-AGAAGIIVSN---HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR-RGTDVFKALALGASGIFIG 309 (370)
Q Consensus 235 ~~~~a~~a~~-aG~d~I~vs~---~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~-~~~dv~kalalGAd~V~ig 309 (370)
+++++....+ .|+|.+-++- ||-+....-.-.++.|.++.+.+ ++|++.=||=. .-+|+.+++.+|..-|-+.
T Consensus 157 dp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~--~~PlVlHGgSGip~~eI~~aI~~GV~KvNi~ 234 (286)
T COG0191 157 DPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAV--SLPLVLHGGSGIPDEEIREAIKLGVAKVNID 234 (286)
T ss_pred CHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHhCceEEeeC
Confidence 4566766555 5699998752 55443311123567899999987 69988877432 3388999999999999999
Q ss_pred HHHHHHHHhc-------C------HHHHHHHHHHHHHHHHHHHHHcCCC
Q 017492 310 RPVVYSLAAE-------G------EKGVRRVLEMLREEFELAMALSGCR 345 (370)
Q Consensus 310 r~~l~~~~~~-------G------~~~v~~~l~~l~~el~~~m~~~G~~ 345 (370)
+-+-++.... . ..-+..-.+.+++-++.-|..+|+.
T Consensus 235 Td~~~A~~~avr~~~~~~~k~~DpR~~l~~a~~am~~~v~~~~~~fgs~ 283 (286)
T COG0191 235 TDLQLAFTAAVREYLAENPKEYDPRKYLKPAIEAMKEVVKEKIKEFGSA 283 (286)
T ss_pred cHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9765543210 0 0112333455566666666666654
No 458
>PLN02826 dihydroorotate dehydrogenase
Probab=90.87 E-value=1.9 Score=43.51 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHhc--CCcEEE-EecCCHHHHHHHHHcCccEEEEc
Q 017492 212 LSWKDVKWLQTIT--KLPILV-KGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~--~~Pv~v-K~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.+.+.+.++++.+ ++||+. .||.+.+||...+.+||+.|.+.
T Consensus 326 ~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~ 370 (409)
T PLN02826 326 LSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLY 370 (409)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeec
Confidence 3567888888887 688665 56899999999999999999984
No 459
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=90.84 E-value=1.6 Score=41.74 Aligned_cols=84 Identities=26% Similarity=0.349 Sum_probs=60.1
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHH----HHHHHHHHccCCCcEEEec--CCCCHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIM----ALEEVVKATQGRIPVFLDG--GVRRGTD 294 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~----~l~~i~~~~~~~ipvi~~G--GI~~~~d 294 (370)
+-|+.+-++-++-.|+.+.++|.++|.+|++|-. -.|.+..+++ ...+|.+.+ ++||++|. |...+..
T Consensus 17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~--~lPv~vD~dtGfG~~~n 94 (289)
T COG2513 17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV--DLPVLVDIDTGFGEALN 94 (289)
T ss_pred CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc--CCceEEeccCCCCcHHH
Confidence 5688888899999999999999999999876422 1355555554 334445554 89999986 6666444
Q ss_pred H----HHHHHhCCCEEEEcH
Q 017492 295 V----FKALALGASGIFIGR 310 (370)
Q Consensus 295 v----~kalalGAd~V~igr 310 (370)
+ .+++..|+.++.|=-
T Consensus 95 vartV~~~~~aG~agi~iED 114 (289)
T COG2513 95 VARTVRELEQAGAAGIHIED 114 (289)
T ss_pred HHHHHHHHHHcCcceeeeee
Confidence 4 445568998887743
No 460
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=90.72 E-value=2 Score=42.33 Aligned_cols=82 Identities=26% Similarity=0.351 Sum_probs=58.0
Q ss_pred CcEEEEecC------CHHHHHHHHHcCccEEEEccC----Ccc--------CCC-------------------------C
Q 017492 226 LPILVKGVL------TAEDARIAVQAGAAGIIVSNH----GAR--------QLD-------------------------Y 262 (370)
Q Consensus 226 ~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~~----gg~--------~~~-------------------------~ 262 (370)
.|+++-... +.+..+++.++|+++|+++-- |-| +.. .
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 577665432 235578899999999998621 111 000 0
Q ss_pred ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 263 VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 263 ~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+..+++.+.++++.. ++||++- ||.+.+|+.++...|+|++.+..
T Consensus 198 ~~~~~~~i~~l~~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 198 PTLTWDDIKWLRKHT--KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCCHHHHHHHHHhc--CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 124567788887765 7899987 68999999999999999999875
No 461
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=90.70 E-value=0.6 Score=43.27 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=51.7
Q ss_pred HHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 242 AVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 242 a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+...++|+|+++++. .++++..+.|..+++.. ++|+++.+|+ +.+.+.+.|.. ||++.+|+.+=
T Consensus 173 ver~~aDaVI~tG~~----TG~~~d~~el~~a~~~~--~~pvlvGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 173 VERGLADAVIVTGSR----TGSPPDLEELKLAKEAV--DTPVLVGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred HHccCCCEEEEeccc----CCCCCCHHHHHHHHhcc--CCCEEEecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 556789999998752 24577888898888877 6999999998 45788887777 99999999764
No 462
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=90.53 E-value=3.7 Score=40.41 Aligned_cols=118 Identities=21% Similarity=0.326 Sum_probs=74.0
Q ss_pred hHHHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHH
Q 017492 90 EYATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREAD 168 (370)
Q Consensus 90 e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d 168 (370)
+..+--.+..+|++.+..++...+.+.+..... +...+.... +....+++++.|+++++.. .+-.|
T Consensus 93 ~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~~g~~v~~~v~------~~~~A~~~~~~G~d~vI~~--g~eAG----- 159 (336)
T COG2070 93 EAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKAAGIKVIHSVI------TVREALKAERAGADAVIAQ--GAEAG----- 159 (336)
T ss_pred HHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHHcCCeEEEEeC------CHHHHHHHHhCCCCEEEec--CCcCC-----
Confidence 445566666779999888776434444432211 223333222 2345678889999988752 11000
Q ss_pred hhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc-cHHHHHHHHHhcC-CcEEEEe-cCCHHHHHHHHHc
Q 017492 169 IKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL-SWKDVKWLQTITK-LPILVKG-VLTAEDARIAVQA 245 (370)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~i~~ir~~~~-~Pv~vK~-v~~~~~a~~a~~a 245 (370)
.+... .+..+ +...+.++++.++ +||+.-| +.+.+++..+...
T Consensus 160 ---------------------------------GH~g~-~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlal 205 (336)
T COG2070 160 ---------------------------------GHRGG-VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALAL 205 (336)
T ss_pred ---------------------------------CcCCC-CCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHh
Confidence 00010 12223 4556899999998 8999875 6899999999999
Q ss_pred CccEEEEcc
Q 017492 246 GAAGIIVSN 254 (370)
Q Consensus 246 G~d~I~vs~ 254 (370)
|||+|.+..
T Consensus 206 GA~gVq~GT 214 (336)
T COG2070 206 GADGVQMGT 214 (336)
T ss_pred ccHHHHhhh
Confidence 999999854
No 463
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=90.49 E-value=1.8 Score=40.89 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=38.4
Q ss_pred CccHHHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEccC
Q 017492 211 SLSWKDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSNH 255 (370)
Q Consensus 211 ~~~~~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~ 255 (370)
.++|+.++.+|+.. +.|+++.+..+++.+..+++. +|+++|+.+
T Consensus 185 ~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~-adGviVgS~ 229 (257)
T TIGR00259 185 EVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSI-ADGVIVATT 229 (257)
T ss_pred CCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhh-CCEEEECCC
Confidence 46899999999865 789999999999999998887 999999654
No 464
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=90.46 E-value=11 Score=39.23 Aligned_cols=44 Identities=23% Similarity=0.415 Sum_probs=33.4
Q ss_pred HHHHHHHccCCCcEEEecCCCCHHHHHHHHH------hC-----CCEEEEcHHHHHH
Q 017492 270 LEEVVKATQGRIPVFLDGGVRRGTDVFKALA------LG-----ASGIFIGRPVVYS 315 (370)
Q Consensus 270 l~~i~~~~~~~ipvi~~GGI~~~~dv~kala------lG-----Ad~V~igr~~l~~ 315 (370)
..+++.. ++|-+|+.|||.+++|...+|- .| -|++.+|++.|..
T Consensus 205 Ys~lR~~--~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 205 YSELRSR--DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred HHHHhcC--CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhh
Confidence 3444432 4899999999999999988763 23 4999999988753
No 465
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=90.45 E-value=0.59 Score=43.48 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHhcCC-cEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 212 LSWKDVKWLQTITKL-PILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~-Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
...+.++.+++.++. |+++.+ +.+.++++.++++|+|+|+|++
T Consensus 170 ~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGS 214 (232)
T PRK04169 170 VPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGN 214 (232)
T ss_pred CCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEECh
Confidence 357889999999988 999976 6899999999999999999965
No 466
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=90.36 E-value=9 Score=37.47 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=34.0
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec-CCCCHHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-GVRRGTDVF 296 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G-GI~~~~dv~ 296 (370)
++|+.+.++||++|++-+ .+. ....+|.+.+ ++|+|.-| |-.+-.+++
T Consensus 186 ~dA~ale~AGAf~ivLE~---------Vp~-~la~~It~~l--~IPtIGIGAG~~cDGQVL 234 (332)
T PLN02424 186 ETALALQEAGCFAVVLEC---------VPA-PVAAAITSAL--QIPTIGIGAGPFCSGQVL 234 (332)
T ss_pred HHHHHHHHcCCcEEEEcC---------CcH-HHHHHHHHhC--CCCEEeecCCCCCCceeE
Confidence 578889999999999832 333 2667777777 89999876 555444443
No 467
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=90.24 E-value=3.3 Score=39.46 Aligned_cols=95 Identities=23% Similarity=0.442 Sum_probs=63.2
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCc--cchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++++.+ ++.||.+|-- +++++ +++....|-..|.+.-.|-+ .... ...+..++.+++.. ..+|||
T Consensus 119 ntdLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~-fgy~~~~~D~~~ip~mk~~~-t~lPVi 195 (281)
T PRK12457 119 QTDLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSS-FGYDNLVVDMLGFRQMKRTT-GDLPVI 195 (281)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-CCCCCcccchHHHHHHHhhC-CCCCEE
Confidence 3455666654 6899999976 77776 56777889999999866644 2111 23445666666532 268999
Q ss_pred Ee---------------cCCCCHH--HHHHHHHhCCCEEEEcH
Q 017492 285 LD---------------GGVRRGT--DVFKALALGASGIFIGR 310 (370)
Q Consensus 285 ~~---------------GGI~~~~--dv~kalalGAd~V~igr 310 (370)
+| ||-|.-. =+..+++.|||++++=.
T Consensus 196 ~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEv 238 (281)
T PRK12457 196 FDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEA 238 (281)
T ss_pred EeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEe
Confidence 87 4444322 23447789999999976
No 468
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=90.16 E-value=3.2 Score=39.27 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 236 AEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 236 ~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~ 312 (370)
.+.|+...++||++|.+-.... .-...++.+..+++.+ ++||+.--=|....++..+..+|||+|.+.-..
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~----~f~g~~~~l~~v~~~v--~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDER----FFQGSLEYLRAARAAV--SLPVLRKDFIIDPYQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccc----cCCCCHHHHHHHHHhc--CCCEEeeeecCCHHHHHHHHHcCCCEEEEEecc
Confidence 3558888999999998854211 1112367788888776 899998777888999999999999999988654
No 469
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=89.93 E-value=4 Score=40.19 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcC-ccEEEE
Q 017492 212 LSWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAG-AAGIIV 252 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG-~d~I~v 252 (370)
+.|+.++.+++.+++||++-+ +.+++++..+++.| +|+|-+
T Consensus 272 ~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 272 PFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred hhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 467888999999999999877 57899999998865 999977
No 470
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=89.89 E-value=3.5 Score=41.26 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 266 TIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 266 ~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
+|+.+..+++.. ++||++- ||.+.+|+.+++.+|+|+|.+..
T Consensus 241 tW~~i~~lr~~~--~~pvivK-gV~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 241 TWEDLAFLREWT--DLPIVLK-GILHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CHHHHHHHHHhc--CCCEEEe-cCCCHHHHHHHHHCCCCEEEEcC
Confidence 567777777765 7898885 78999999999999999999863
No 471
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=89.83 E-value=17 Score=35.42 Aligned_cols=210 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred ceeEcCeeecC---ceeecccccccccCChhhHHHHHHHHHcCCceeecCCCCCCHHHHhccCCCceE-----------E
Q 017492 62 NTTVLGFKISM---PIMIAPTAMQKMAHPEGEYATARAASAAGTIMTLSSWSTSSVEEVASTGPGIRF-----------F 127 (370)
Q Consensus 62 s~~l~g~~l~~---Pi~iapm~~~~~~~~~~e~~la~aa~~~G~~~~~s~~~~~~~eei~~~~~~~~~-----------~ 127 (370)
..++.|+.+.. |++||=+|..--..-+.-..+..+|+++|+. .+=-+.-...+.+........+ +
T Consensus 1 ~~~Ig~r~i~~~~~~~iIAEig~NHnG~le~A~~lIdaAk~aGAD-avKfQt~~~~d~~t~~~~~~~~~i~~~~~~~sly 79 (347)
T COG2089 1 MIKIGNRTIGKDKKPFIIAEIGANHNGDLERAKELIDAAKEAGAD-AVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLY 79 (347)
T ss_pred CeeeCceeecCCCCcEEEeeecccccCcHHHHHHHHHHHHHcCcc-eeeeecccccccccccccCCccccccccccccHH
Q ss_pred EEee--cCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhh
Q 017492 128 QLYV--YKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVA 205 (370)
Q Consensus 128 Qly~--~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (370)
|+|. .-+.++..++.+.|++.|.-.+ +.....+..|+-+.+..|. -
T Consensus 80 el~e~~~~p~e~~~~Lke~a~~~Gi~~~-----SSPfd~~svd~l~~~~~~a---------------------------y 127 (347)
T COG2089 80 ELYEEAETPLEWHAQLKEYARKRGIIFF-----SSPFDLTAVDLLESLNPPA---------------------------Y 127 (347)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCeEEE-----ecCCCHHHHHHHHhcCCCe---------------------------E
Q ss_pred hcCCCCccHHHHHHHHHhcCCcEEEEecCC-----HHHHHHHHHcCcc-EEEEccCCccCCCCccchHHHHHHHHHHccC
Q 017492 206 GQIDRSLSWKDVKWLQTITKLPILVKGVLT-----AEDARIAVQAGAA-GIIVSNHGARQLDYVPATIMALEEVVKATQG 279 (370)
Q Consensus 206 ~~~d~~~~~~~i~~ir~~~~~Pv~vK~v~~-----~~~a~~a~~aG~d-~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 279 (370)
.......++-.+-+.....+.|+++-..++ .+....+.+.|.- .+.+.-...+.-..-...+..++.+.+..
T Consensus 128 KIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-- 205 (347)
T COG2089 128 KIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-- 205 (347)
T ss_pred EecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh--
Q ss_pred CCcEEEecCCCCHHHHHHHHHhCCCEE
Q 017492 280 RIPVFLDGGVRRGTDVFKALALGASGI 306 (370)
Q Consensus 280 ~ipvi~~GGI~~~~dv~kalalGAd~V 306 (370)
+++|=.|.==..-.-.+-|+++||..+
T Consensus 206 n~~vGlSDHT~g~~a~l~AvALGA~vi 232 (347)
T COG2089 206 NAIVGLSDHTLGILAPLAAVALGASVI 232 (347)
T ss_pred CCccccccCccchhHHHHHHHhcccce
No 472
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=89.74 E-value=1.9 Score=40.74 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=54.7
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHH-HH---HHHHHccCCCc-EEEecC---CCC-
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-LE---EVVKATQGRIP-VFLDGG---VRR- 291 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~-l~---~i~~~~~~~ip-vi~~GG---I~~- 291 (370)
+.|+++-++-+.-.|+.+.++|+|.|.++...+. ..|.+.-+++. +. .+.+.. +.| |++|-+ ..+
T Consensus 11 ~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~--~~p~viaD~~fg~y~~~ 88 (254)
T cd06557 11 GEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA--PRALVVADMPFGSYQTS 88 (254)
T ss_pred CCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCeEEEeCCCCcccCC
Confidence 5688888888889999999999999986422121 13445555543 33 333333 678 888765 444
Q ss_pred HHH----HHHHHH-hCCCEEEE
Q 017492 292 GTD----VFKALA-LGASGIFI 308 (370)
Q Consensus 292 ~~d----v~kala-lGAd~V~i 308 (370)
.++ +.+.+. .||++|.+
T Consensus 89 ~~~av~~a~r~~~~aGa~aVki 110 (254)
T cd06557 89 PEQALRNAARLMKEAGADAVKL 110 (254)
T ss_pred HHHHHHHHHHHHHHhCCeEEEE
Confidence 333 577777 99999999
No 473
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=89.69 E-value=1.3 Score=39.04 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCcEEEEec----CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCC
Q 017492 216 DVKWLQTITKLPILVKGV----LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVR 290 (370)
Q Consensus 216 ~i~~ir~~~~~Pv~vK~v----~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~ 290 (370)
.++.-++ .+++.+-..- ...+- ...+.+.++|.|.+- .+ -....+.++.+.. ++|||+.|=|+
T Consensus 87 ~i~~Akk-~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL-------PG--v~Pkvi~~i~~~t--~~piIAGGLi~ 154 (181)
T COG1954 87 VIKKAKK-LGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL-------PG--VMPKVIKEITEKT--HIPIIAGGLIE 154 (181)
T ss_pred HHHHHHH-cCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEc-------Cc--ccHHHHHHHHHhc--CCCEEeccccc
Confidence 3444444 3666555542 22333 355667999999882 11 1224566666655 89999999999
Q ss_pred CHHHHHHHHHhCCCEEEEcHHHHH
Q 017492 291 RGTDVFKALALGASGIFIGRPVVY 314 (370)
Q Consensus 291 ~~~dv~kalalGAd~V~igr~~l~ 314 (370)
+-+|+..||..||-+|.-..--+|
T Consensus 155 t~Eev~~Al~aGA~avSTs~~~lW 178 (181)
T COG1954 155 TEEEVREALKAGAVAVSTSNTKLW 178 (181)
T ss_pred cHHHHHHHHHhCcEEEeecchhhc
Confidence 999999999999999875543333
No 474
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=89.65 E-value=5.5 Score=37.50 Aligned_cols=123 Identities=19% Similarity=0.239 Sum_probs=74.1
Q ss_pred HHHHHHHhc---CCcEEEEec------CCH------------HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHH
Q 017492 216 DVKWLQTIT---KLPILVKGV------LTA------------EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVV 274 (370)
Q Consensus 216 ~i~~ir~~~---~~Pv~vK~v------~~~------------~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~ 274 (370)
.|+++-+.+ ++|+++-.+ .+. +-++...+.|+|.+.|---+ +. -| ..-+++....
T Consensus 148 ~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~a~k~fsd~GadvlKvevPv-yv--eG-e~~ea~~~f~ 223 (306)
T COG3684 148 YIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIEAMKEFSDSGADVLKVEVPV-YV--EG-EQEEAAAAFQ 223 (306)
T ss_pred HHHHHHHHhhhcCCceeEeeeecCCCCCChHHHHhhchHHHHHHHHHhccCCCceEEeecce-ec--cC-ccHHHHHHHH
Confidence 456655554 799888764 122 11344567899998884322 10 01 2333443333
Q ss_pred HHc-cCCCc-EEEecCCCC---HHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCChhh
Q 017492 275 KAT-QGRIP-VFLDGGVRR---GTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELAMALSGCRSLKE 349 (370)
Q Consensus 275 ~~~-~~~ip-vi~~GGI~~---~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~m~~~G~~~l~~ 349 (370)
+.- ..++| |+.|.|+.. ...+.=|+..||++|..||+.-.+....| ....+.+++-.|..+|++
T Consensus 224 ~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtWa~~v~~g-----------~d~~re~Lrt~g~~ni~e 292 (306)
T COG3684 224 RQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLAGRATWAGVVEQG-----------EDAAREWLRTVGFPNLDE 292 (306)
T ss_pred HhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEechhhhhcccccC-----------cHHHHHHHHhhccccHHH
Confidence 221 12677 678889965 34555577899999999998643322223 345577888889999988
Q ss_pred hccc
Q 017492 350 ITRD 353 (370)
Q Consensus 350 l~~~ 353 (370)
|+..
T Consensus 293 L~~v 296 (306)
T COG3684 293 LNKV 296 (306)
T ss_pred HHHH
Confidence 8753
No 475
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=89.61 E-value=3.7 Score=38.60 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=62.6
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCc--cchHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYV--PATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~--~~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++++.+ ++.||.+|-- .++++ ++.+...|-+.|++.-+|-+ .... ...+..++.+++ . ..|||
T Consensus 105 n~~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t-f~y~r~~~D~~~ip~~k~-~--~~PVi 179 (258)
T TIGR01362 105 QTDLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS-FGYNNLVVDMRSLPIMRE-L--GCPVI 179 (258)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC-cCCCCcccchhhhHHHHh-c--CCCEE
Confidence 4456666654 6899999965 67776 67778899999998866642 2222 124455665554 3 58999
Q ss_pred Ee---------------cCCCCHHH--HHHHHHhCCCEEEEcH
Q 017492 285 LD---------------GGVRRGTD--VFKALALGASGIFIGR 310 (370)
Q Consensus 285 ~~---------------GGI~~~~d--v~kalalGAd~V~igr 310 (370)
+| ||.|.-.- +..++++|||++++=.
T Consensus 180 ~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEv 222 (258)
T TIGR01362 180 FDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMET 222 (258)
T ss_pred EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 87 55554332 2347889999999975
No 476
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=89.60 E-value=2.4 Score=40.60 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=84.1
Q ss_pred HHHHHHHHcCCceeecCCCCCCHHHHhccCC-CceEEEEeec-----CChHHHHHHHHHHHHcCCc--EEEEecCCCCCc
Q 017492 92 ATARAASAAGTIMTLSSWSTSSVEEVASTGP-GIRFFQLYVY-----KDRNVVAQLVRRAERAGFK--AIALTVDTPRLG 163 (370)
Q Consensus 92 ~la~aa~~~G~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~-----~d~~~~~~~l~ra~~~G~~--ai~itvd~p~~g 163 (370)
.+...|++..+|.++.--=..+.+.+..+.. +..++|+-.. ...+.+.++.+.+++.|+. +=..+++.--.+
T Consensus 65 ~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~ 144 (281)
T PRK06806 65 LMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDG 144 (281)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCC
Confidence 3455777888998885322345666555433 5678887421 1235678888888887753 223444311100
Q ss_pred chhHHhhhhcCCCCccc----cccccccccCccccccchhhHHHhhhcCCCCccHHHHHHHHHhcCCcEEEEe--cCCHH
Q 017492 164 RREADIKNRFTLPPFLT----LKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDVKWLQTITKLPILVKG--VLTAE 237 (370)
Q Consensus 164 ~r~~d~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~--v~~~~ 237 (370)
.. .+...+.-|.... ..+.+-+.. +.+...+.+ ...+.+.++.++++++.+++|+++=| ..+.+
T Consensus 145 ~~--~~g~s~t~~eea~~f~~~tg~DyLAv-----aiG~~hg~~---~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e 214 (281)
T PRK06806 145 SE--DIEMLLTSTTEAKRFAEETDVDALAV-----AIGNAHGMY---NGDPNLRFDRLQEINDVVHIPLVLHGGSGISPE 214 (281)
T ss_pred cc--cccceeCCHHHHHHHHHhhCCCEEEE-----ccCCCCCCC---CCCCccCHHHHHHHHHhcCCCEEEECCCCCCHH
Confidence 00 0000000000000 000000000 001011111 12456789999999999999999888 57899
Q ss_pred HHHHHHHcCccEEEEcc
Q 017492 238 DARIAVQAGAAGIIVSN 254 (370)
Q Consensus 238 ~a~~a~~aG~d~I~vs~ 254 (370)
+...+.++|++.|-|..
T Consensus 215 ~~~~~i~~G~~kinv~T 231 (281)
T PRK06806 215 DFKKCIQHGIRKINVAT 231 (281)
T ss_pred HHHHHHHcCCcEEEEhH
Confidence 99999999999998853
No 477
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=89.42 E-value=4.1 Score=40.58 Aligned_cols=91 Identities=21% Similarity=0.314 Sum_probs=61.2
Q ss_pred HHHHHHhc-CCcEEEEecC------CHHHHHHHHHcCccEEEEcc----CCccC--------------------------
Q 017492 217 VKWLQTIT-KLPILVKGVL------TAEDARIAVQAGAAGIIVSN----HGARQ-------------------------- 259 (370)
Q Consensus 217 i~~ir~~~-~~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~----~gg~~-------------------------- 259 (370)
+++|.+.. +.|.++-... +.+..+++.++|+.+|++.- .|.|.
T Consensus 123 lEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 202 (367)
T TIGR02708 123 LPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGK 202 (367)
T ss_pred HHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCcc
Confidence 34444442 4566665542 23557889999999998852 11110
Q ss_pred -C------CCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcH
Q 017492 260 -L------DYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGR 310 (370)
Q Consensus 260 -~------~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr 310 (370)
. .....+|+.+.++++.. ++||++= ||.+.+|+.++..+|+|+|.++.
T Consensus 203 ~~~~~~~~~~~~~~w~~i~~l~~~~--~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 203 SMDNVYKSAKQKLSPRDIEEIAGYS--GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred chhhhccccCCCCCHHHHHHHHHhc--CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 0 00123567888888776 7899976 69999999999999999998764
No 478
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=89.35 E-value=3.5 Score=40.75 Aligned_cols=89 Identities=22% Similarity=0.323 Sum_probs=60.2
Q ss_pred HHHHHHhc-CCcEEEEecC------CHHHHHHHHHcCccEEEEcc----CCccC------------------CC----C-
Q 017492 217 VKWLQTIT-KLPILVKGVL------TAEDARIAVQAGAAGIIVSN----HGARQ------------------LD----Y- 262 (370)
Q Consensus 217 i~~ir~~~-~~Pv~vK~v~------~~~~a~~a~~aG~d~I~vs~----~gg~~------------------~~----~- 262 (370)
++++.+.. +-|.+++... +.+..+++.++|+..|+++- .|-|. .+ .
T Consensus 115 ~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~ 194 (351)
T cd04737 115 LEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKG 194 (351)
T ss_pred HHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccC
Confidence 33444444 4577777753 23456788899999998853 11110 00 0
Q ss_pred -----------ccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEE
Q 017492 263 -----------VPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 263 -----------~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~i 308 (370)
...+|+.+..+++.. ++||++= ||.+++|+.++...|+|++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~lr~~~--~~PvivK-gv~~~~dA~~a~~~G~d~I~v 248 (351)
T cd04737 195 KGISEIYAAAKQKLSPADIEFIAKIS--GLPVIVK-GIQSPEDADVAINAGADGIWV 248 (351)
T ss_pred cchhhhhhhccCCCCHHHHHHHHHHh--CCcEEEe-cCCCHHHHHHHHHcCCCEEEE
Confidence 112567777777765 7899987 589999999999999999998
No 479
>PRK15452 putative protease; Provisional
Probab=89.29 E-value=6.8 Score=40.02 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHh---cCCcEEEEec--CCHH-------HHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccC
Q 017492 212 LSWKDVKWLQTI---TKLPILVKGV--LTAE-------DARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQG 279 (370)
Q Consensus 212 ~~~~~i~~ir~~---~~~Pv~vK~v--~~~~-------~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~ 279 (370)
|+++++++..+. .++.|.+..- ...+ ..+.+.++|+|+|+|++-| .+..+++.. .
T Consensus 43 f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G------------~l~~~ke~~-p 109 (443)
T PRK15452 43 FNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPG------------LIMMVREHF-P 109 (443)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHH------------HHHHHHHhC-C
Confidence 455555554433 3667776631 2222 2466779999999997632 333344432 3
Q ss_pred CCcEEEec--CCCCHHHHHHHHHhCCCEEEEcHHH
Q 017492 280 RIPVFLDG--GVRRGTDVFKALALGASGIFIGRPV 312 (370)
Q Consensus 280 ~ipvi~~G--GI~~~~dv~kalalGAd~V~igr~~ 312 (370)
++||.+|- .|.+...+.-...+|++.|.+.+-+
T Consensus 110 ~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrEL 144 (443)
T PRK15452 110 EMPIHLSVQANAVNWATVKFWQQMGLTRVILSREL 144 (443)
T ss_pred CCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcC
Confidence 67888887 5678777766666999999999955
No 480
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=89.19 E-value=2.4 Score=39.97 Aligned_cols=71 Identities=25% Similarity=0.340 Sum_probs=49.5
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHHHHHHHHhCCCEEEEcHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVV 313 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~dv~kalalGAd~V~igr~~l 313 (370)
+.|+...++||++|.|-.-. .+-..+++.|..+++.+ ++||+.-==|-++.++.++.++|||+|.+=-.++
T Consensus 72 ~~a~~y~~~GA~aiSVlTe~----~~F~Gs~~dL~~v~~~~--~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L 142 (254)
T PF00218_consen 72 EIAKAYEEAGAAAISVLTEP----KFFGGSLEDLRAVRKAV--DLPVLRKDFIIDPYQIYEARAAGADAVLLIAAIL 142 (254)
T ss_dssp HHHHHHHHTT-SEEEEE--S----CCCHHHHHHHHHHHHHS--SS-EEEES---SHHHHHHHHHTT-SEEEEEGGGS
T ss_pred HHHHHHHhcCCCEEEEECCC----CCCCCCHHHHHHHHHHh--CCCcccccCCCCHHHHHHHHHcCCCEeehhHHhC
Confidence 45788889999999985421 11223677888888887 8999998889999999999999999998765443
No 481
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=89.17 E-value=21 Score=34.04 Aligned_cols=179 Identities=19% Similarity=0.164 Sum_probs=99.5
Q ss_pred ceeecccccccccCChhhHHHHHHHHHc-CCceee--c---CCCCCCHHHHh-------ccCCC--ceEEEEeecCChHH
Q 017492 73 PIMIAPTAMQKMAHPEGEYATARAASAA-GTIMTL--S---SWSTSSVEEVA-------STGPG--IRFFQLYVYKDRNV 137 (370)
Q Consensus 73 Pi~iapm~~~~~~~~~~e~~la~aa~~~-G~~~~~--s---~~~~~~~eei~-------~~~~~--~~~~Qly~~~d~~~ 137 (370)
|.++.|+.-.+-.+.++-..+.+-..+. |+...+ + ++.+.+.+|.. +...+ +.++++- ..+.+.
T Consensus 6 ~a~~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~~ 84 (288)
T cd00954 6 AALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLKE 84 (288)
T ss_pred eceECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHHH
Confidence 5556666433333444445667777677 866543 2 23445666532 22222 3455543 235566
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCccHHHH
Q 017492 138 VAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSLSWKDV 217 (370)
Q Consensus 138 ~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~i 217 (370)
..++.+.|++.|++++.+. .|.. + + .+.+-..+..
T Consensus 85 ai~~a~~a~~~Gad~v~~~--~P~y----------~--~-------------------------------~~~~~i~~~~ 119 (288)
T cd00954 85 SQELAKHAEELGYDAISAI--TPFY----------Y--K-------------------------------FSFEEIKDYY 119 (288)
T ss_pred HHHHHHHHHHcCCCEEEEe--CCCC----------C--C-------------------------------CCHHHHHHHH
Confidence 7788889999999999874 2321 0 0 0001134456
Q ss_pred HHHHHhc-CCcEEEEec-------CCHHHHHHHHHcC-ccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecC
Q 017492 218 KWLQTIT-KLPILVKGV-------LTAEDARIAVQAG-AAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGG 288 (370)
Q Consensus 218 ~~ir~~~-~~Pv~vK~v-------~~~~~a~~a~~aG-~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GG 288 (370)
+.+.+.+ ++||++=.. .+++...++.+.. +-+|.-+. ..+..+.++.+..+++..|+. |.
T Consensus 120 ~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~~pnivgiK~s~----------~d~~~~~~~~~~~~~~~~v~~-G~ 188 (288)
T cd00954 120 REIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVIGVKFTA----------TDLYDLERIRAASPEDKLVLN-GF 188 (288)
T ss_pred HHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEEeCC----------CCHHHHHHHHHhCCCCcEEEE-ec
Confidence 6777778 799887643 4667777776532 22333221 123444555555443554443 32
Q ss_pred CCCHHHHHHHHHhCCCEEEEcHH
Q 017492 289 VRRGTDVFKALALGASGIFIGRP 311 (370)
Q Consensus 289 I~~~~dv~kalalGAd~V~igr~ 311 (370)
...+...+.+||++++.|..
T Consensus 189 ---d~~~~~~~~~G~~G~i~~~~ 208 (288)
T cd00954 189 ---DEMLLSALALGADGAIGSTY 208 (288)
T ss_pred ---hHHHHHHHHcCCCEEEeChh
Confidence 23466788899999988864
No 482
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.14 E-value=5.9 Score=35.58 Aligned_cols=89 Identities=25% Similarity=0.159 Sum_probs=55.5
Q ss_pred cHHHHHHHHHhc-CCcEEEEe-cCCHH--HHHHHHHcCccEEEEccCCccCCCCccch-HHHHHHHHHHccCCCcEEEe-
Q 017492 213 SWKDVKWLQTIT-KLPILVKG-VLTAE--DARIAVQAGAAGIIVSNHGARQLDYVPAT-IMALEEVVKATQGRIPVFLD- 286 (370)
Q Consensus 213 ~~~~i~~ir~~~-~~Pv~vK~-v~~~~--~a~~a~~aG~d~I~vs~~gg~~~~~~~~~-~~~l~~i~~~~~~~ipvi~~- 286 (370)
..+.++++|+.. +.++++-. ++++. +++.+.++|+|.|.+ |+-. +... .+.+..+.+ . .+++++.
T Consensus 39 g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~v--h~~~----~~~~~~~~i~~~~~-~--g~~~~~~~ 109 (206)
T TIGR03128 39 GIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTV--LGVA----DDATIKGAVKAAKK-H--GKEVQVDL 109 (206)
T ss_pred CHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEE--eccC----CHHHHHHHHHHHHH-c--CCEEEEEe
Confidence 466788888875 44444322 23443 689999999999998 4321 1112 233343333 2 6777765
Q ss_pred cCCCCH-HHHHHHHHhCCCEEEEcH
Q 017492 287 GGVRRG-TDVFKALALGASGIFIGR 310 (370)
Q Consensus 287 GGI~~~-~dv~kalalGAd~V~igr 310 (370)
-+..+. +++..+..+|+|.|.+..
T Consensus 110 ~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 110 INVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred cCCCChHHHHHHHHHcCCCEEEEcC
Confidence 355544 677778888999998853
No 483
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=89.08 E-value=4.7 Score=38.27 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHH-H---HHHHHHccCCC-cEE
Q 017492 214 WKDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA-L---EEVVKATQGRI-PVF 284 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~-l---~~i~~~~~~~i-pvi 284 (370)
...++++++. +-|+++-++-+.-.|+.+.++|+|.|.++...+. ..|.++-+++. + ..+.+.. +. +|+
T Consensus 4 ~~~lr~~~~~-g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~vv 80 (264)
T PRK00311 4 ISDLQKMKQE-GEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALVV 80 (264)
T ss_pred HHHHHHHHhC-CCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcEE
Confidence 3445554432 5688888888899999999999999986422111 13444545543 2 3333322 45 488
Q ss_pred EecCCC----CHHH----HHHHHH-hCCCEEEE
Q 017492 285 LDGGVR----RGTD----VFKALA-LGASGIFI 308 (370)
Q Consensus 285 ~~GGI~----~~~d----v~kala-lGAd~V~i 308 (370)
+|-++. +.++ +.+.+. .||++|-+
T Consensus 81 aD~pfg~y~~~~~~av~~a~r~~~~aGa~aVki 113 (264)
T PRK00311 81 ADMPFGSYQASPEQALRNAGRLMKEAGAHAVKL 113 (264)
T ss_pred EeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 876644 3355 566777 89999999
No 484
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=88.92 E-value=0.63 Score=43.18 Aligned_cols=40 Identities=30% Similarity=0.566 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 215 KDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+.++..++..+.|+++.| +.+.+.|+.+.++|||.|+|+|
T Consensus 172 ~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 172 EVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 345555555589999986 6899999999999999999976
No 485
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=88.90 E-value=4.2 Score=38.43 Aligned_cols=93 Identities=26% Similarity=0.319 Sum_probs=62.2
Q ss_pred cHHHHHHHHHhcCCcEEEEec--CCHHH----HHHHHHcCccEEEEccCCccCCCCcc--chHHHHHHHHHHccCCCcEE
Q 017492 213 SWKDVKWLQTITKLPILVKGV--LTAED----ARIAVQAGAAGIIVSNHGARQLDYVP--ATIMALEEVVKATQGRIPVF 284 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~v--~~~~~----a~~a~~aG~d~I~vs~~gg~~~~~~~--~~~~~l~~i~~~~~~~ipvi 284 (370)
..+.++++.+ ++.||.+|-- .++++ +++....|-.-|++.-+|-+ ..... ..+..++.+++ . .+|||
T Consensus 113 n~~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t-f~y~r~~~D~~~vp~~k~-~--~lPVi 187 (264)
T PRK05198 113 QTDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS-FGYNNLVVDMRGLPIMRE-T--GAPVI 187 (264)
T ss_pred hHHHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC-cCCCCeeechhhhHHHhh-C--CCCEE
Confidence 4566777654 6899999965 67776 56777889999998766542 22221 24455665554 3 58999
Q ss_pred Ee---------------cCCCCHHH--HHHHHHhCCCEEEEcH
Q 017492 285 LD---------------GGVRRGTD--VFKALALGASGIFIGR 310 (370)
Q Consensus 285 ~~---------------GGI~~~~d--v~kalalGAd~V~igr 310 (370)
+| ||-|.-.- +..++++|||++++=.
T Consensus 188 ~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEv 230 (264)
T PRK05198 188 FDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIET 230 (264)
T ss_pred EeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEe
Confidence 87 55544322 3357889999999975
No 486
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.85 E-value=20 Score=33.38 Aligned_cols=88 Identities=10% Similarity=0.140 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHHHhhhcCCCCc
Q 017492 133 KDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAAYVAGQIDRSL 212 (370)
Q Consensus 133 ~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 212 (370)
.+.+.+.+.++..++. ++++.+++-||-+- -.+.. .+. ....... ..+
T Consensus 15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~------------adG~~-----------i~~----~~~~a~~----~g~ 62 (244)
T PRK13125 15 PNVESFKEFIIGLVEL-VDILELGIPPKYPK------------YDGPV-----------IRK----SHRKVKG----LDI 62 (244)
T ss_pred CCHHHHHHHHHHHHhh-CCEEEECCCCCCCC------------CCCHH-----------HHH----HHHHHHH----cCc
Confidence 4667778888888887 99999987544320 00000 000 0011111 111
Q ss_pred cHHHHHHHHHhcCCcEE--EEe---cCCHHH-HHHHHHcCccEEEEc
Q 017492 213 SWKDVKWLQTITKLPIL--VKG---VLTAED-ARIAVQAGAAGIIVS 253 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~--vK~---v~~~~~-a~~a~~aG~d~I~vs 253 (370)
++.++++|+.+++|+. +|. +.+++. ++.+.++|+|+|.+.
T Consensus 63 -~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~ 108 (244)
T PRK13125 63 -WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFP 108 (244)
T ss_pred -HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEEC
Confidence 7899999988899985 333 234554 788999999999993
No 487
>PRK06801 hypothetical protein; Provisional
Probab=88.81 E-value=3 Score=40.10 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=39.5
Q ss_pred CCccHHHHHHHHHhcCCcEEEEec--CCHHHHHHHHHcCccEEEEcc
Q 017492 210 RSLSWKDVKWLQTITKLPILVKGV--LTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+.+.++.++++++.+++|+++=|. .+.++++.+.++|++.|-++.
T Consensus 188 ~~l~~e~l~~i~~~~~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T 234 (286)
T PRK06801 188 PKLDFARLAAIHQQTGLPLVLHGGSGISDADFRRAIELGIHKINFYT 234 (286)
T ss_pred CCCCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEEehh
Confidence 456889999999999999998887 678899999999999998853
No 488
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=88.80 E-value=6 Score=33.97 Aligned_cols=87 Identities=23% Similarity=0.210 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCcEEEEec-CCHHH-HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHc---c-CCCcEEEec
Q 017492 214 WKDVKWLQTITKLPILVKGV-LTAED-ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKAT---Q-GRIPVFLDG 287 (370)
Q Consensus 214 ~~~i~~ir~~~~~Pv~vK~v-~~~~~-a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~---~-~~ipvi~~G 287 (370)
-+.+..+-...+.-|+.-+. .++++ +..|++..+|.|.+|..-|. ..+..+++.+.+ + +++. +..|
T Consensus 29 akvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~-------h~~l~~~lve~lre~G~~~i~-v~~G 100 (143)
T COG2185 29 AKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSLDGG-------HLTLVPGLVEALREAGVEDIL-VVVG 100 (143)
T ss_pred hHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEeccch-------HHHHHHHHHHHHHHhCCcceE-Eeec
Confidence 34555555556888887765 56666 56677999999999875332 233444444443 2 2444 4779
Q ss_pred CCCCHHHHHHHHHhCCCEEEE
Q 017492 288 GVRRGTDVFKALALGASGIFI 308 (370)
Q Consensus 288 GI~~~~dv~kalalGAd~V~i 308 (370)
|+-..+|..+.-++|.+.+.-
T Consensus 101 Gvip~~d~~~l~~~G~~~if~ 121 (143)
T COG2185 101 GVIPPGDYQELKEMGVDRIFG 121 (143)
T ss_pred CccCchhHHHHHHhCcceeeC
Confidence 999999988877899888743
No 489
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=88.72 E-value=3.6 Score=37.05 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=68.5
Q ss_pred HHHHHHHHhc-CCcEEEEecCCHHHHHHHHHcCccEEEEcc----CCccCCCCccchHHHHHHHHHHccCCCcEEEecCC
Q 017492 215 KDVKWLQTIT-KLPILVKGVLTAEDARIAVQAGAAGIIVSN----HGARQLDYVPATIMALEEVVKATQGRIPVFLDGGV 289 (370)
Q Consensus 215 ~~i~~ir~~~-~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~----~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI 289 (370)
+.++.||+.- ..-+.+|--.+.+++....+ -+|.+-|-. .||. .....-..-+..+++.. .+..|=+|||+
T Consensus 103 ~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~-~~D~vLvMtVePGFGGQ--kFme~mm~KV~~lR~ky-p~l~ievDGGv 178 (224)
T KOG3111|consen 103 ELVEKIREKGMKVGLALKPGTPVEDLEPLAE-HVDMVLVMTVEPGFGGQ--KFMEDMMPKVEWLREKY-PNLDIEVDGGV 178 (224)
T ss_pred HHHHHHHHcCCeeeEEeCCCCcHHHHHHhhc-cccEEEEEEecCCCchh--hhHHHHHHHHHHHHHhC-CCceEEecCCc
Confidence 4578888763 33455565566777766655 467765532 2331 01111112233333332 36677799999
Q ss_pred CCHHHHHHHHHhCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 017492 290 RRGTDVFKALALGASGIFIGRPVVYSLAAEGEKGVRRVLEMLREEFELA 338 (370)
Q Consensus 290 ~~~~dv~kalalGAd~V~igr~~l~~~~~~G~~~v~~~l~~l~~el~~~ 338 (370)
.- +.+-++..+||+.+..|++.+.+ .--.+++..|+++...+
T Consensus 179 ~~-~ti~~~a~AGAN~iVaGsavf~a------~d~~~vi~~lr~~v~~a 220 (224)
T KOG3111|consen 179 GP-STIDKAAEAGANMIVAGSAVFGA------ADPSDVISLLRNSVEKA 220 (224)
T ss_pred Cc-chHHHHHHcCCCEEEecceeecC------CCHHHHHHHHHHHHhhh
Confidence 65 88999999999999999998743 12235677777776544
No 490
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=88.70 E-value=23 Score=33.97 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=45.2
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE---EecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
++...++|||.|.+ +| +.+.+.+.++.+.+ ..|++ ..+|-.-..++.+.-++|.+.|..|..++++
T Consensus 167 a~ay~~AGAD~vfi--~g-------~~~~e~i~~~~~~i--~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~a 235 (285)
T TIGR02317 167 AKAYVEAGADMIFP--EA-------LTSLEEFRQFAKAV--KVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRA 235 (285)
T ss_pred HHHHHHcCCCEEEe--CC-------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHH
Confidence 56778999999988 32 44567777787777 46773 3344211124555567899999999887765
No 491
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=88.70 E-value=9.1 Score=35.25 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHcCccEEEEcc---CCcc-CCCCccchHHH---HHHHHHHc---c-CCCcEEEecCCCCHHHHHHHHH-
Q 017492 233 VLTAEDARIAVQAGAAGIIVSN---HGAR-QLDYVPATIMA---LEEVVKAT---Q-GRIPVFLDGGVRRGTDVFKALA- 300 (370)
Q Consensus 233 v~~~~~a~~a~~aG~d~I~vs~---~gg~-~~~~~~~~~~~---l~~i~~~~---~-~~ipvi~~GGI~~~~dv~kala- 300 (370)
+.++++|+.+.++|+|.|+... .||. ....+.+..++ +..+.++. + +-+++.-.|=|.+++|..--+.
T Consensus 163 V~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~~~Sl~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~ 242 (276)
T COG5564 163 VFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARSALSLADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYILDR 242 (276)
T ss_pred ecCHHHHHHHHHcCcceeeecccccccceeccccccCHHHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHHHhh
Confidence 5789999999999999988732 2332 11122222221 22222222 2 2377777778999999876554
Q ss_pred -hCCCEEEEcH
Q 017492 301 -LGASGIFIGR 310 (370)
Q Consensus 301 -lGAd~V~igr 310 (370)
-|+|+..=++
T Consensus 243 c~~~~gfygas 253 (276)
T COG5564 243 CPGCDGFYGAS 253 (276)
T ss_pred CCCCCcccccc
Confidence 4788754443
No 492
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=88.69 E-value=16 Score=34.69 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=33.9
Q ss_pred HHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEec-CCCCHHHH
Q 017492 237 EDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDG-GVRRGTDV 295 (370)
Q Consensus 237 ~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~G-GI~~~~dv 295 (370)
++|+.+.++||++|++-+ .+ .+...+|.+.+ ++|+|.-| |-.+-.++
T Consensus 164 ~~A~a~e~AGA~~ivlE~---------vp-~~~a~~It~~l--~iP~iGIGaG~~~dGQv 211 (263)
T TIGR00222 164 EDALALEEAGAQLLVLEC---------VP-VELAAKITEAL--AIPVIGIGAGNVCDGQI 211 (263)
T ss_pred HHHHHHHHcCCCEEEEcC---------Cc-HHHHHHHHHhC--CCCEEeeccCCCCCcee
Confidence 558888999999999832 34 37778888887 79998766 44444444
No 493
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=88.65 E-value=0.86 Score=44.78 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=63.3
Q ss_pred CceEEEEeecCChHHHHHHHHHHHHcCCcEEEEecCCCCCcchhHHhhhhcCCCCccccccccccccCccccccchhhHH
Q 017492 123 GIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFTLPPFLTLKNFQGLDLGKMDEANDSGLAA 202 (370)
Q Consensus 123 ~~~~~Qly~~~d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (370)
-|.|+.|.+.-+.+.+.++++.++++|++++++. ++-. . + +. +.-|. .. + ..+..++.
T Consensus 211 ~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~-NT~~-~-~--~~---~~~~~-~~--~---------~~GGlSG~-- 268 (335)
T TIGR01036 211 VPVLVKIAPDLTESDLEDIADSLVELGIDGVIAT-NTTV-S-R--SL---VQGPK-NS--D---------ETGGLSGK-- 268 (335)
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEE-CCCC-c-c--cc---ccCcc-cc--C---------CCCcccCH--
Confidence 3677777665555677888888899999998765 3221 1 0 00 00000 00 0 00001111
Q ss_pred HhhhcCCCCccHHHHHHHHHhc--CCcEE-EEecCCHHHHHHHHHcCccEEEEc
Q 017492 203 YVAGQIDRSLSWKDVKWLQTIT--KLPIL-VKGVLTAEDARIAVQAGAAGIIVS 253 (370)
Q Consensus 203 ~~~~~~d~~~~~~~i~~ir~~~--~~Pv~-vK~v~~~~~a~~a~~aG~d~I~vs 253 (370)
.+ .....+.++.+++.. ++||+ +.++.+.+|+...+.+|||.|.+.
T Consensus 269 ~i-----~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 269 PL-----QDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIY 317 (335)
T ss_pred HH-----HHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhh
Confidence 11 123566788888777 58987 567899999999999999999874
No 494
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=88.65 E-value=24 Score=34.03 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEE---EecCCCCHHHHHHHHHhCCCEEEEcHHHHHH
Q 017492 239 ARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVF---LDGGVRRGTDVFKALALGASGIFIGRPVVYS 315 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi---~~GGI~~~~dv~kalalGAd~V~igr~~l~~ 315 (370)
++...++|||.|.+ +| +.+.+.+.++.+.+ ++|++ ..+|-.-..++...-++|.+.|..|...+++
T Consensus 172 a~aY~eAGAD~ifi--~~-------~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~a 240 (292)
T PRK11320 172 AQAYVEAGADMIFP--EA-------MTELEMYRRFADAV--KVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRA 240 (292)
T ss_pred HHHHHHcCCCEEEe--cC-------CCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 56778999999988 32 44677777787776 56773 3344221123444556899999999877664
No 495
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=88.58 E-value=3.2 Score=40.02 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=39.8
Q ss_pred CCccHHHHHHHHHhc-CCcEEEEec--CCHHHHHHHHHcCccEEEEcc
Q 017492 210 RSLSWKDVKWLQTIT-KLPILVKGV--LTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 210 ~~~~~~~i~~ir~~~-~~Pv~vK~v--~~~~~a~~a~~aG~d~I~vs~ 254 (370)
+.+.++.++++++.+ ++|+++=|. .+.++++.+++.|++.|-++.
T Consensus 186 k~l~~e~L~~i~~~~~~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T 233 (293)
T PRK07315 186 EGLDLDHLEKLTEAVPGFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNT 233 (293)
T ss_pred CcCCHHHHHHHHHhccCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcc
Confidence 457899999999999 599988887 788999999999999998854
No 496
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=88.53 E-value=2.2 Score=39.86 Aligned_cols=82 Identities=28% Similarity=0.356 Sum_probs=56.6
Q ss_pred CCcEEEEecCCHHHHHHHHHcCccEEEEccCCcc----CCCCccchHHH----HHHHHHHccCCCcEEEecCC--CCHHH
Q 017492 225 KLPILVKGVLTAEDARIAVQAGAAGIIVSNHGAR----QLDYVPATIMA----LEEVVKATQGRIPVFLDGGV--RRGTD 294 (370)
Q Consensus 225 ~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~----~~~~~~~~~~~----l~~i~~~~~~~ipvi~~GGI--~~~~d 294 (370)
+.|+++-++-+.-.|+.+.++|+|+|.+++++.. ..|.+..+++. +..|.+.. .+||++|+-. .+..+
T Consensus 8 ~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~--~~Pv~~D~~~G~g~~~~ 85 (243)
T cd00377 8 GGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV--DLPVIADADTGYGNALN 85 (243)
T ss_pred CCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc--cCCEEEEcCCCCCCHHH
Confidence 5688888888888999999999999999875432 13444444443 33344433 7999999755 34334
Q ss_pred H----HHHHHhCCCEEEE
Q 017492 295 V----FKALALGASGIFI 308 (370)
Q Consensus 295 v----~kalalGAd~V~i 308 (370)
+ .+.+..|+++|.+
T Consensus 86 ~~~~v~~~~~~G~~gv~i 103 (243)
T cd00377 86 VARTVRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 4 3445589999999
No 497
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.50 E-value=7.6 Score=37.58 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHhcCCcEEEEec-CCHHHHHHHHHc-CccEEEEc
Q 017492 212 LSWKDVKWLQTITKLPILVKGV-LTAEDARIAVQA-GAAGIIVS 253 (370)
Q Consensus 212 ~~~~~i~~ir~~~~~Pv~vK~v-~~~~~a~~a~~a-G~d~I~vs 253 (370)
..++.++.+++.+++||+.-+. .+++++..+++. |+|.|.++
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALG 311 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeec
Confidence 4677889999999999988764 679999999998 79999773
No 498
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=88.44 E-value=1 Score=40.07 Aligned_cols=42 Identities=36% Similarity=0.461 Sum_probs=32.7
Q ss_pred cHHHHHHHHHhcCCcEEEEe-cCCHHHHHHHHHcCccEEEEcc
Q 017492 213 SWKDVKWLQTITKLPILVKG-VLTAEDARIAVQAGAAGIIVSN 254 (370)
Q Consensus 213 ~~~~i~~ir~~~~~Pv~vK~-v~~~~~a~~a~~aG~d~I~vs~ 254 (370)
-.+.++++++.++.|++..| +.+.+++..+.++|+++|..|+
T Consensus 128 ~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 128 MPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp HHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred HHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 34578888888999999887 5789999999999999998875
No 499
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=88.22 E-value=3.6 Score=37.90 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCcEEEEecCCHHHHHHHHHcCccEEEEccCCccCCCCccchHHHHHHHHHHccCCCcEEEecCCCCHHH
Q 017492 215 KDVKWLQTITKLPILVKGVLTAEDARIAVQAGAAGIIVSNHGARQLDYVPATIMALEEVVKATQGRIPVFLDGGVRRGTD 294 (370)
Q Consensus 215 ~~i~~ir~~~~~Pv~vK~v~~~~~a~~a~~aG~d~I~vs~~gg~~~~~~~~~~~~l~~i~~~~~~~ipvi~~GGI~~~~d 294 (370)
+.+..+.+..++|+++-. ....+.+.|+|+|.++... ..+.++++.++ .-.+|+.+-.++-.+
T Consensus 61 ~~l~~l~~~~gv~liINd-----~~dlA~~~~adGVHLg~~d-----------~~~~~~r~~~~-~~~iiG~s~~~s~~~ 123 (221)
T PRK06512 61 EKLVPVIQEAGAAALIAG-----DSRIAGRVKADGLHIEGNL-----------AALAEAIEKHA-PKMIVGFGNLRDRHG 123 (221)
T ss_pred HHHHHHHHHhCCEEEEeC-----HHHHHHHhCCCEEEECccc-----------cCHHHHHHhcC-CCCEEEecCCCCHHH
Confidence 346666666788988653 3667888999999774210 12344444442 223555444678888
Q ss_pred HHHHHHhCCCEEEEcHH
Q 017492 295 VFKALALGASGIFIGRP 311 (370)
Q Consensus 295 v~kalalGAd~V~igr~ 311 (370)
+.++..+|||.|.+|--
T Consensus 124 a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 124 AMEIGELRPDYLFFGKL 140 (221)
T ss_pred HHHhhhcCCCEEEECCC
Confidence 88888999999999953
No 500
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=87.96 E-value=3.6 Score=39.40 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=83.9
Q ss_pred HHHHHHHcC-CceeecCCCCCCHHHHhccCC-CceEEEEeecC-----ChHHHHHHHHHHHHcCCcEEEEecCCCCCcch
Q 017492 93 TARAASAAG-TIMTLSSWSTSSVEEVASTGP-GIRFFQLYVYK-----DRNVVAQLVRRAERAGFKAIALTVDTPRLGRR 165 (370)
Q Consensus 93 la~aa~~~G-~~~~~s~~~~~~~eei~~~~~-~~~~~Qly~~~-----d~~~~~~~l~ra~~~G~~ai~itvd~p~~g~r 165 (370)
+...|.++. +|+++.---..+++.+..+.. +..++|+-... +.+.+.++++.+.+.|+. +..-+++ ..|..
T Consensus 65 ~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~-Ve~ElG~-~gg~e 142 (282)
T TIGR01859 65 VKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVS-VEAELGT-LGGIE 142 (282)
T ss_pred HHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCE-EEEeeCC-CcCcc
Confidence 455677788 898886322235665554433 44567764211 245678888888888864 4444444 22211
Q ss_pred hHHhhhh----cCCCCccccccccccccCccccccchhhHH-HhhhcCCCCccHHHHHHHHHhcCCcEEEEe--cCCHHH
Q 017492 166 EADIKNR----FTLPPFLTLKNFQGLDLGKMDEANDSGLAA-YVAGQIDRSLSWKDVKWLQTITKLPILVKG--VLTAED 238 (370)
Q Consensus 166 ~~d~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~i~~ir~~~~~Pv~vK~--v~~~~~ 238 (370)
|...+ +.-|+. ...+.. ..+...-+ -+.+. +-.....+.+.++.++++++.+++|++.=| ..+.++
T Consensus 143 --d~~~g~~~~~t~~ee--a~~f~~-~tgvD~La--vs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~ 215 (282)
T TIGR01859 143 --DGVDEKEAELADPDE--AEQFVK-ETGVDYLA--AAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQ 215 (282)
T ss_pred --ccccccccccCCHHH--HHHHHH-HHCcCEEe--eccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 10000 000000 000000 00000000 00000 001112456789999999999999998888 578899
Q ss_pred HHHHHHcCccEEEEcc
Q 017492 239 ARIAVQAGAAGIIVSN 254 (370)
Q Consensus 239 a~~a~~aG~d~I~vs~ 254 (370)
.+.+.++|++.|-++.
T Consensus 216 i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 216 IKKAIKLGIAKINIDT 231 (282)
T ss_pred HHHHHHcCCCEEEECc
Confidence 9999999999999864
Done!