BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 017493
         (370 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CAT7|ALKB_CAUCR Alpha-ketoglutarate-dependent dioxygenase AlkB homolog
           OS=Caulobacter crescentus (strain ATCC 19089 / CB15)
           GN=alkB PE=3 SV=1
          Length = 220

 Score = 33.1 bits (74), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 47/134 (35%), Gaps = 25/134 (18%)

Query: 238 PGMVLLKHYLTIREQ-ILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQT 295
           PG  +    L I  Q  L+  +     + P   Y+  Y  G  + + M  LG L W    
Sbjct: 24  PGFDVWPGLLDISAQRALVEAVLAGAEQAPFSNYRTAY--GKPMSVAMTALGSLGWTSDA 81

Query: 296 RKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDIL--PALSPDICI 353
           R Y                   + V R          M   + ++  +L  P   PD C+
Sbjct: 82  RGY-------------------RYVDRHPETGRPWPDMPPALLDLWTVLGDPETPPDSCL 122

Query: 354 VNFYNTSGRLGLHQ 367
           VN Y    R+GLHQ
Sbjct: 123 VNLYRDGARMGLHQ 136


>sp|B8GWW6|ALKB_CAUCN Alpha-ketoglutarate-dependent dioxygenase AlkB homolog
           OS=Caulobacter crescentus (strain NA1000 / CB15N)
           GN=alkB PE=3 SV=2
          Length = 220

 Score = 33.1 bits (74), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 47/134 (35%), Gaps = 25/134 (18%)

Query: 238 PGMVLLKHYLTIREQ-ILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQT 295
           PG  +    L I  Q  L+  +     + P   Y+  Y  G  + + M  LG L W    
Sbjct: 24  PGFDVWPGLLDISAQRALVEAVLAGAEQAPFSNYRTAY--GKPMSVAMTALGSLGWTSDA 81

Query: 296 RKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDIL--PALSPDICI 353
           R Y                   + V R          M   + ++  +L  P   PD C+
Sbjct: 82  RGY-------------------RYVDRHPETGRPWPDMPPALLDLWTVLGDPETPPDSCL 122

Query: 354 VNFYNTSGRLGLHQ 367
           VN Y    R+GLHQ
Sbjct: 123 VNLYRDGARMGLHQ 136


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147,388,591
Number of Sequences: 539616
Number of extensions: 6442825
Number of successful extensions: 13504
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13501
Number of HSP's gapped (non-prelim): 8
length of query: 370
length of database: 191,569,459
effective HSP length: 119
effective length of query: 251
effective length of database: 127,355,155
effective search space: 31966143905
effective search space used: 31966143905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)