Query 017493
Match_columns 370
No_of_seqs 109 out of 460
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 09:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15401 alpha-ketoglutarate-d 100.0 8.9E-33 1.9E-37 254.7 12.5 120 234-370 14-136 (213)
2 TIGR00568 alkb DNA alkylation 99.9 1.6E-22 3.5E-27 180.3 11.0 112 243-370 1-115 (169)
3 COG3145 AlkB Alkylated DNA rep 99.8 7.6E-21 1.6E-25 174.2 9.4 113 234-370 11-126 (194)
4 KOG2731 DNA alkylation damage 99.8 4.2E-20 9E-25 182.0 1.9 154 202-370 175-335 (378)
5 PF13532 2OG-FeII_Oxy_2: 2OG-F 99.7 2.3E-17 5.1E-22 142.7 7.4 114 239-370 1-117 (194)
6 KOG3200 Uncharacterized conser 97.6 9.6E-05 2.1E-09 69.2 5.8 98 236-369 10-107 (224)
7 KOG4176 Uncharacterized conser 97.5 0.00029 6.3E-09 69.9 7.1 104 234-369 123-229 (323)
8 KOG2731 DNA alkylation damage 95.0 0.018 3.9E-07 58.5 3.0 72 281-369 164-236 (378)
9 smart00702 P4Hc Prolyl 4-hydro 92.2 1.4 3.1E-05 38.3 9.6 99 238-369 1-102 (178)
10 PRK05467 Fe(II)-dependent oxyg 81.2 9.7 0.00021 36.4 8.7 98 240-369 2-99 (226)
11 TIGR02408 ectoine_ThpD ectoine 75.7 25 0.00054 33.6 9.7 30 237-266 27-56 (277)
12 PLN02216 protein SRG1 41.7 20 0.00044 35.8 2.6 23 307-329 158-180 (357)
13 PLN00052 prolyl 4-hydroxylase; 38.4 2E+02 0.0044 28.9 8.9 95 236-368 52-150 (310)
14 TIGR01762 chlorin-enz chlorina 37.4 1.1E+02 0.0023 29.9 6.7 25 237-261 13-37 (288)
15 PF12933 FTO_NTD: FTO catalyti 37.2 35 0.00075 33.9 3.3 15 345-359 134-148 (253)
16 PF05721 PhyH: Phytanoyl-CoA d 26.5 81 0.0017 26.5 3.4 25 238-262 4-28 (211)
17 CHL00200 trpA tryptophan synth 21.8 58 0.0013 31.6 1.9 78 241-326 123-200 (263)
18 PF09859 Oxygenase-NA: Oxygena 21.3 62 0.0013 30.6 1.9 19 351-369 63-81 (173)
No 1
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=100.00 E-value=8.9e-33 Score=254.71 Aligned_cols=120 Identities=26% Similarity=0.452 Sum_probs=111.9
Q ss_pred ceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC-CceecCCCCc--ccccCCCCCCCC
Q 017493 234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQTRKY--GKKRQVDGCEPS 310 (370)
Q Consensus 234 ~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG-~gWdsDt~gY--~~~~P~dGapwP 310 (370)
+++.||+++||||+ .++|++|+++|++++.+ +|||+|.+|+|++|+++|+||| ++|.+|+.+| ...+|.++++||
T Consensus 14 ~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~-~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp 91 (213)
T PRK15401 14 EPLAPGAVLLRGFA-LAAAEALLAAIEAVAAQ-APFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWP 91 (213)
T ss_pred eecCCCcEEeCCCC-HHHHHHHHHHHHHHHhc-CCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCC
Confidence 67999999999996 78999999999999999 9999999999999999999999 9999998888 555688999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493 311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS 370 (370)
Q Consensus 311 pIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD 370 (370)
+||++|.+|+++++..+ +++.+.||+||||||.+|++||||||+|
T Consensus 92 ~~P~~l~~L~~~~~~~~---------------~~~~~~p~a~LvN~Y~~G~~mg~H~D~~ 136 (213)
T PRK15401 92 AMPASFLALAQRAAAAA---------------GFPGFQPDACLINRYAPGAKLSLHQDKD 136 (213)
T ss_pred CchHHHHHHHHHHHHHc---------------CCCCCCCCEEEEEeccCcCccccccCCC
Confidence 99999999999998877 5678999999999999999999999975
No 2
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=99.88 E-value=1.6e-22 Score=180.28 Aligned_cols=112 Identities=27% Similarity=0.453 Sum_probs=100.6
Q ss_pred cCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC-CceecCCCCc--ccccCCCCCCCCCCCHHHHHH
Q 017493 243 LKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQTRKY--GKKRQVDGCEPSVIPSEFKQL 319 (370)
Q Consensus 243 LPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG-~gWdsDt~gY--~~~~P~dGapwPpIPe~L~~L 319 (370)
|++|+..++|.+|+++|++++.+ .||+++.++.|++|++.+++|| +.|.++...| ..+.+..+.+||+||++|.+|
T Consensus 1 l~~~~~~~~~~~l~~~~~~~~~~-~~w~~~~~~~gk~~~~pr~~~~~l~W~~~g~~Y~ys~~~~~~~~~~p~~P~~L~~L 79 (169)
T TIGR00568 1 LKRYFAFNAQEQLIRDINDVASQ-DPFRQYVTPGGYTMSVAMTNLGKLGWTTHGQGYLYSPKDPQTNKPWPAMPQDLGDL 79 (169)
T ss_pred CCCccChHHHHHHHHHHHHHhhc-CCCcCeEecCCeEeeehhhhcccceEEcCCCcccCCCcccCCCCCCCCCCHHHHHH
Confidence 67899999999999999999988 8999999999999999999999 9999986666 555444789999999999999
Q ss_pred HHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493 320 VQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS 370 (370)
Q Consensus 320 a~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD 370 (370)
+++++..+ +++++.||+||||||.+|++||||+|++
T Consensus 80 ~~~v~~~~---------------g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~ 115 (169)
T TIGR00568 80 CERVATAA---------------GFPDFQPDACLVNRYAPGATLSLHQDRD 115 (169)
T ss_pred HHHHHHHh---------------CCCCCCCCEEEEEeecCCCccccccccc
Confidence 99988776 4667899999999999999999999963
No 3
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=99.84 E-value=7.6e-21 Score=174.17 Aligned_cols=113 Identities=24% Similarity=0.297 Sum_probs=97.8
Q ss_pred ceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCC-CcccccCCCceeEEEEeecCCceecCCCCc--ccccCCCCCCCC
Q 017493 234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGG-FYQPGYNDGAKLRLRMMCLGLDWDPQTRKY--GKKRQVDGCEPS 310 (370)
Q Consensus 234 ~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaP-Fr~P~tPgG~~MSVRMmcLG~gWdsDt~gY--~~~~P~dGapwP 310 (370)
..+.||++++++|+ ..+|.++++++..+..+ .| |....++.|++|+|.| ..+|.+|.++| +..+|.++.+||
T Consensus 11 ~~~~~G~~~~~~~~-~~~~~~l~~~l~~~~~~-~P~~~~~~~~~g~~~sV~r---~~~W~~d~~gy~y~~~~p~~~~p~p 85 (194)
T COG3145 11 RQLAPGAVILPGFL-LLTQGALVAALLFLLSQ-APWFRPRRTPYGKPMSVPR---LLGWVTDRRGYRYSLRSPLTGKPWP 85 (194)
T ss_pred ccCCCCeEEEeccc-ccchHHHHHHHHHhccc-CcccceeecCCCcEeeeee---ccceecccccccccccccCCCCCCC
Confidence 46889999999999 67999999999999888 78 5555666799999999 55566665667 889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493 311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS 370 (370)
Q Consensus 311 pIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD 370 (370)
++|+.+..++. ++ +.+.+.||+||||+|.+|++||||||+|
T Consensus 86 ~l~~~~~~~~~----~~---------------g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~ 126 (194)
T COG3145 86 PLLALFHDLFG----AA---------------GYPFEGPEAVLVNRYRPGASIGWHQDKD 126 (194)
T ss_pred ccHHHHHHHHH----Hh---------------cCCCCChhheeEEeccCCCccccccccc
Confidence 99999998886 23 6788999999999999999999999986
No 4
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=99.78 E-value=4.2e-20 Score=181.98 Aligned_cols=154 Identities=38% Similarity=0.604 Sum_probs=138.9
Q ss_pred CCCCcccc--ccc----cccccccccchhh-ccccccCcceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCccccc
Q 017493 202 NVEPFDIC--LSR----RRNFRMEKENECR-QTVDWTREGILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGY 274 (370)
Q Consensus 202 ~~~pfDIc--~~~----Lkpslle~nre~r-~~~~~s~~~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~t 274 (370)
+-.+|||| +++ ++|+++...+|+. ++.+... ..++|| +|++||++++|..|+..||+++..+ |||+|.+
T Consensus 175 dw~s~~~~~~~s~k~~~~~~~ll~~~~~~~~~a~~~~~-~~~~~G--li~nYlsi~~tl~ih~d~reld~~~-pf~s~s~ 250 (378)
T KOG2731|consen 175 DWSSKDIFIFLSKKHYNIKPSLLGLLREKVKAAKGFSH-IVIRPG--LIKNYLSIDDTLGIHLDCRELDLSK-PFYSPSL 250 (378)
T ss_pred CCccccccccccccCCCCChHHhhhhhhhhhhhcCccc-eeccCc--ceeeecccCcEEEEEeehhhcccCC-ccccccc
Confidence 33457766 776 7999999988777 4455555 889999 9999999999999999999999995 5999999
Q ss_pred CCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEE
Q 017493 275 NDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIV 354 (370)
Q Consensus 275 PgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLV 354 (370)
..++.+.+.|||+|..|++.+.+|++..+.+| |.+|+..|+..+..+.+.+++.+.++.+.| .||+|+|
T Consensus 251 g~~ai~lLg~m~l~e~p~p~~lrsGdv~im~G---------fsrlv~haIp~s~sl~~~e~~~~~~~~e~p--lp~i~~~ 319 (378)
T KOG2731|consen 251 GQGAILLLGMMCLGENPDPMTLRSGDVVIMDG---------FSRLVEHAIPESRSLPARESNGTKAGDEAP--LPDICIV 319 (378)
T ss_pred cccceeeecccccCCCCCccccccCceEeecc---------hHHHHhhccchhceecccccCCCcccccCC--Ccccccc
Confidence 88999999999999999999999999999999 999999999999999999999999999999 9999999
Q ss_pred eeecCCCCccccccCC
Q 017493 355 NFYNTSGRLGLHQVCS 370 (370)
Q Consensus 355 NfY~PGArMGLHQDrD 370 (370)
|||.+.++||+|||++
T Consensus 320 ~f~~~~g~~~~~Q~~~ 335 (378)
T KOG2731|consen 320 NFYSETGSLGLHQDKA 335 (378)
T ss_pred cccCCCcccccchhHH
Confidence 9999999999999975
No 5
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=99.70 E-value=2.3e-17 Score=142.74 Aligned_cols=114 Identities=25% Similarity=0.434 Sum_probs=85.0
Q ss_pred ceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC-CceecCCCCc--ccccCCCCCCCCCCCHH
Q 017493 239 GMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQTRKY--GKKRQVDGCEPSVIPSE 315 (370)
Q Consensus 239 GmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG-~gWdsDt~gY--~~~~P~dGapwPpIPe~ 315 (370)
|+.++|+||+.++|.+|++.+.+.. +|.++.++.+..++..++.++ ++|.+....| ...++.+..+||++|++
T Consensus 1 G~~~~~~fls~~e~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~ 76 (194)
T PF13532_consen 1 GLYYIPNFLSEEEAAELLNELRESA----PFRQPTYPMGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEW 76 (194)
T ss_dssp -EEEETTSS-HHHHHHHHHHHHHHS------B-GCCCCCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhC----CCcCCeEcCCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHH
Confidence 8999999999999999999999543 368888888889999988787 8999876666 33346788999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493 316 FKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS 370 (370)
Q Consensus 316 L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD 370 (370)
|.++++++.+.+. ..+.+.||+||||+|.+|++||+|+|..
T Consensus 77 l~~~~~~~~~~~~--------------~~~~~~~n~~liN~Y~~g~~i~~H~D~~ 117 (194)
T PF13532_consen 77 LSRLLERLVEATG--------------IPPGWRPNQCLINYYRDGSGIGPHSDDE 117 (194)
T ss_dssp HHHHHHHHHHHHT---------------SHSS--SEEEEEEESSTT-EEEE---T
T ss_pred HHHHHHHHHHHhc--------------cccCCCCCEEEEEecCCCCCcCCCCCcc
Confidence 9999999988772 2346789999999999999999999963
No 6
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=9.6e-05 Score=69.22 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=69.6
Q ss_pred ecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHH
Q 017493 236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSE 315 (370)
Q Consensus 236 L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~ 315 (370)
+.|-|.++|+|++.+||..+++.|.... . |++. .....|..+.| +-.++ +|.-+..||+|
T Consensus 10 ~~pt~~YIPnfIt~EEe~~~lshIe~ap---~----pkW~--~L~NRRLqNyG----------Gvvh~-~glipeelP~w 69 (224)
T KOG3200|consen 10 SAPTMIYIPNFITEEEENLYLSHIENAP---Q----PKWR--VLANRRLQNYG----------GVVHK-TGLIPEELPPW 69 (224)
T ss_pred ccceEEEcCCccChHHHHHHHHHHhcCC---C----chhH--HHHhhhhhhcC----------Ccccc-CCcCccccCHH
Confidence 5688999999999999998888775422 2 2221 11233444444 11222 57778899999
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccC
Q 017493 316 FKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVC 369 (370)
Q Consensus 316 L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDr 369 (370)
|..++.++-... -|+. .....|||.|-||-++.-|+|-
T Consensus 70 Lq~~v~kinnlg---------------lF~s-~~NHVLVNeY~pgqGImPHtDG 107 (224)
T KOG3200|consen 70 LQYYVDKINNLG---------------LFKS-PANHVLVNEYLPGQGIMPHTDG 107 (224)
T ss_pred HHHHHHHhhccc---------------ccCC-CcceeEeecccCCCCcCcCCCC
Confidence 999998885322 3554 7899999999999999999994
No 7
>KOG4176 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00029 Score=69.90 Aligned_cols=104 Identities=24% Similarity=0.434 Sum_probs=69.7
Q ss_pred ceecCc-eEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC--CceecCCCCcccccCCCCCCCC
Q 017493 234 GILRPG-MVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG--LDWDPQTRKYGKKRQVDGCEPS 310 (370)
Q Consensus 234 ~~L~PG-mVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG--~gWdsDt~gY~~~~P~dGapwP 310 (370)
..+.|| +.++++|++..+++-++..+.+=. |.. ... |+ ++++..|| +.+.++.- +. -.+.-
T Consensus 123 ~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~-----~~~-~~~-gk--~R~~iq~G~~f~y~~~~~-----d~--~~~~~ 186 (323)
T KOG4176|consen 123 EVFIPGELSLIVDFVTELEEKGLIGALVDET-----FTY-QES-GK--HREVIQLGYPFDYRTNNV-----DE--SKPVD 186 (323)
T ss_pred cccChhhceehhhhhhhhHHhhhhccccccc-----cee-ecc-cc--ceeeeecCceeccCCCcc-----cc--cCccC
Confidence 445566 888888888655555554443222 222 221 22 45777788 44444211 11 11266
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccC
Q 017493 311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVC 369 (370)
Q Consensus 311 pIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDr 369 (370)
|||..+..++++...+. -+|. .||+|+||+|.||..+--|.|.
T Consensus 187 piPs~~~~ii~rlv~~~---------------~ip~-~pd~~~iN~Ye~G~~i~ph~~~ 229 (323)
T KOG4176|consen 187 PIPSLFKSIIDRLVSWR---------------VIPE-RPDQCTINFYEPGDGIPPHIDH 229 (323)
T ss_pred CCchHHHHHHHHhhhhc---------------cCCC-CCCeeEEEeeCCCCCCCCCCCh
Confidence 99999999999999998 3666 7999999999999999999864
No 8
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification]
Probab=94.96 E-value=0.018 Score=58.52 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=48.5
Q ss_pred EEEEeecCCceecCCCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcE-EEEeeecC
Q 017493 281 RLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDI-CIVNFYNT 359 (370)
Q Consensus 281 SVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDa-CLVNfY~P 359 (370)
++|+.++|+++++.+..|- -+.-.+-+-||++|+.+.+.-+.+|. ++....... .|+|||++
T Consensus 164 KlRw~T~G~~~dw~s~~~~---~~~s~k~~~~~~~ll~~~~~~~~~a~--------------~~~~~~~~~Gli~nYlsi 226 (378)
T KOG2731|consen 164 KLRWVTLGNQYDWSSKDIF---IFLSKKHYNIKPSLLGLLREKVKAAK--------------GFSHIVIRPGLIKNYLSI 226 (378)
T ss_pred hhcccccccccCCcccccc---ccccccCCCCChHHhhhhhhhhhhhc--------------CccceeccCcceeeeccc
Confidence 5677888844444444520 01224556899999999988888774 233333333 59999999
Q ss_pred CCCccccccC
Q 017493 360 SGRLGLHQVC 369 (370)
Q Consensus 360 GArMGLHQDr 369 (370)
+.++|.|-|.
T Consensus 227 ~~tl~ih~d~ 236 (378)
T KOG2731|consen 227 DDTLGIHLDC 236 (378)
T ss_pred CcEEEEEeeh
Confidence 9999999874
No 9
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=92.20 E-value=1.4 Score=38.30 Aligned_cols=99 Identities=22% Similarity=0.255 Sum_probs=56.7
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHHHH
Q 017493 238 PGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFK 317 (370)
Q Consensus 238 PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~L~ 317 (370)
|++.++++||++++-++|++.++.... ++.......-.+..-..|.. .+ .|... .. -++...
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~-~~~~~~~~~~~~~~~~~R~~-~~-~~l~~------------~~---~~~~~~ 62 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGW-RGEVTRGDTNPNHDSKYRQS-NG-TWLEL------------LK---GDLVIE 62 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcc-cceeecCCCCccccCCCEee-cc-eecCC------------CC---CCHHHH
Confidence 789999999999999999988877554 22221111000001111221 11 12111 00 133445
Q ss_pred HHHHHHHHHHHHhhhhccccccccccCC---CCCCcEEEEeeecCCCCccccccC
Q 017493 318 QLVQRSMSEAHALIKMDSKVSNVEDILP---ALSPDICIVNFYNTSGRLGLHQVC 369 (370)
Q Consensus 318 ~La~rAA~~A~al~~~~~~~~~~~~g~p---~~~PDaCLVNfY~PGArMGLHQDr 369 (370)
.|.+++.... +++ ....+.+-|..|.+|+..+.|.|.
T Consensus 63 ~l~~~i~~~~---------------~~~~~~~~~~~~~~~~~Y~~g~~~~~H~D~ 102 (178)
T smart00702 63 RIRQRLADFL---------------GLLRGLPLSAEDAQVARYGPGGHYGPHVDN 102 (178)
T ss_pred HHHHHHHHHH---------------CCCchhhccCcceEEEEECCCCcccCcCCC
Confidence 5555555544 122 345678889999999999999995
No 10
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=81.22 E-value=9.7 Score=36.43 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=51.3
Q ss_pred eEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHHHHHH
Q 017493 240 MVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQL 319 (370)
Q Consensus 240 mVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~L~~L 319 (370)
+.++|++|++++=+.|++.+...+...+. . +.|++ .. .+.. +...+.=.+.-..|
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~----~------------taG~~--~~--~vKn-----N~ql~~d~~~a~~l 56 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGR----V------------TAGAQ--AA--QVKN-----NQQLPEDSPLAREL 56 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCC----c------------CcCcc--ch--hccc-----ccccCCCCHHHHHH
Confidence 46789999998877888777664332211 1 12211 11 2211 22333333444555
Q ss_pred HHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccC
Q 017493 320 VQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVC 369 (370)
Q Consensus 320 a~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDr 369 (370)
++++...... +.- -...++|... --.++|.|.+|...|+|+|-
T Consensus 57 ~~~i~~~L~~----~~l--~~sa~lp~~i-~~~~f~rY~~G~~y~~H~D~ 99 (226)
T PRK05467 57 GNLILDALTR----NPL--FFSAALPRKI-HPPLFNRYEGGMSYGFHVDN 99 (226)
T ss_pred HHHHHHHHhc----Cch--hhhhcccccc-ccceEEEECCCCccCccccC
Confidence 5555543310 000 0011233221 14579999999999999994
No 11
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=75.73 E-value=25 Score=33.59 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=24.8
Q ss_pred cCceEEcCCCCCHHHHHHHHHHHHhhcCCC
Q 017493 237 RPGMVLLKHYLTIREQILIVRICQELGKGP 266 (370)
Q Consensus 237 ~PGmVlLPGfLS~~eQqaLV~~~ReL~~gP 266 (370)
.-|.++++++|++++=++|.+.+.++...|
T Consensus 27 ~dGyvvl~~vls~eev~~lr~~i~~~~~~~ 56 (277)
T TIGR02408 27 RDGFLLLENLFSDDEVAALLAEVERMTRDP 56 (277)
T ss_pred HCCEEECcccCCHHHHHHHHHHHHHHHhcc
Confidence 469999999999988888888888876553
No 12
>PLN02216 protein SRG1
Probab=41.68 E-value=20 Score=35.79 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=15.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Q 017493 307 CEPSVIPSEFKQLVQRSMSEAHA 329 (370)
Q Consensus 307 apwPpIPe~L~~La~rAA~~A~a 329 (370)
..||..|+.|.+.+++-.....+
T Consensus 158 ~~WP~~p~~fr~~~~~y~~~~~~ 180 (357)
T PLN02216 158 HLFPKLPLPFRDTLETYSAEVKS 180 (357)
T ss_pred hhcccchHHHHHHHHHHHHHHHH
Confidence 45999998887776665554443
No 13
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=38.42 E-value=2e+02 Score=28.88 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=54.6
Q ss_pred ecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCC---C-ceeEEEEeecCCceecCCCCcccccCCCCCCCCC
Q 017493 236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYND---G-AKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSV 311 (370)
Q Consensus 236 L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPg---G-~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPp 311 (370)
+.|=++++++||+.+|-..|++..+..... -++.+ | ..++-..++-| -|..+ .+
T Consensus 52 ~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~------S~v~~~~~g~~~~s~~RTS~~-~~l~~-----------~~---- 109 (310)
T PLN00052 52 WQPRIFVYKGFLSDAECDHLVKLAKKKIQR------SMVADNKSGKSVMSEVRTSSG-MFLDK-----------RQ---- 109 (310)
T ss_pred CCCCEEEECCcCCHHHHHHHHHhccccccc------ceeecCCCCccccCCCEEecc-eeecC-----------CC----
Confidence 478999999999998888888777553221 11111 1 11221223333 12111 00
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCcccccc
Q 017493 312 IPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQV 368 (370)
Q Consensus 312 IPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQD 368 (370)
-+.+..|.+|++.+. ++|...-+.--|-.|.+|..-..|.|
T Consensus 110 -dpvv~~I~~Ria~~t---------------~lp~~~~E~lQVlrY~~Gq~Y~~H~D 150 (310)
T PLN00052 110 -DPVVSRIEERIAAWT---------------FLPEENAENIQILRYEHGQKYEPHFD 150 (310)
T ss_pred -CHHHHHHHHHHHHHh---------------CCCcccCcceEEEecCCCCCCCCCCC
Confidence 135677777777665 33333333444555999999999988
No 14
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=37.43 E-value=1.1e+02 Score=29.95 Aligned_cols=25 Identities=8% Similarity=-0.071 Sum_probs=20.6
Q ss_pred cCceEEcCCCCCHHHHHHHHHHHHh
Q 017493 237 RPGMVLLKHYLTIREQILIVRICQE 261 (370)
Q Consensus 237 ~PGmVlLPGfLS~~eQqaLV~~~Re 261 (370)
.-|.+++++++++++=.+|.+++++
T Consensus 13 e~Gyv~~~~~~s~eei~~L~~~~~~ 37 (288)
T TIGR01762 13 KNGFIGPFTLYSPEEMKETWKRIRL 37 (288)
T ss_pred hCCEEeCcCCCCHHHHHHHHHHHHH
Confidence 4699999999998777777777754
No 15
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family. This enzyme is a dioxygenase that repairs alkylated DNA and RNA by oxidative demethylation []. FTO activity is highest towards single-stranded RNA containing 3-methyluracil, followed by single-stranded DNA containing 3-methylthymine. FTO has low demethylase activity towards single-stranded DNA containing 1-methyladenine or 3-methylcytosine []. FTO has no activity towards 1-methylguanine. It has no detectable activity towards double-stranded DNA. FTO requires molecular oxygen, alpha-ketoglutarate and iron. FTO contributes to the regulation of the global metabolic rate, energy expenditure and energy homeostasis. It contributes to the regulation of body size and body fat accumulation as well []. This domain is the catalytic AlkB-like domain from the FTO protein []. This domain catalyses a demethylase activity with a preference for 3-methylthymidine.; PDB: 3LFM_A.
Probab=37.21 E-value=35 Score=33.85 Aligned_cols=15 Identities=7% Similarity=0.330 Sum_probs=7.9
Q ss_pred CCCCCcEEEEeeecC
Q 017493 345 PALSPDICIVNFYNT 359 (370)
Q Consensus 345 p~~~PDaCLVNfY~P 359 (370)
+.-...++||||++|
T Consensus 134 ~~~~fNvTLlN~MdP 148 (253)
T PF12933_consen 134 GSCEFNVTLLNYMDP 148 (253)
T ss_dssp ------EEEEEEE-S
T ss_pred cceeeehhhhhccCc
Confidence 344589999999999
No 16
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=26.50 E-value=81 Score=26.47 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.3
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhh
Q 017493 238 PGMVLLKHYLTIREQILIVRICQEL 262 (370)
Q Consensus 238 PGmVlLPGfLS~~eQqaLV~~~ReL 262 (370)
-|+++++++|++++=++|.+.+.++
T Consensus 4 ~Gyvvi~~~l~~~~~~~l~~~~~~~ 28 (211)
T PF05721_consen 4 DGYVVIRNVLSPEEVERLREELDRL 28 (211)
T ss_dssp HSEEEETTSS-HHHHHHHHHHHHHH
T ss_pred CcEEEECCcCCHHHHHHHHHHHHHH
Confidence 4999999999998888888888887
No 17
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.79 E-value=58 Score=31.64 Aligned_cols=78 Identities=10% Similarity=0.153 Sum_probs=52.7
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHHHHHHH
Q 017493 241 VLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSEFKQLV 320 (370)
Q Consensus 241 VlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~L~~La 320 (370)
+++|+. +.++..++++.|++.+..+.+|..|+||...--.+...+=|+=|. -.+..++|+. ..+|+.+.++.
T Consensus 123 viipDL-P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~------vS~~GvTG~~-~~~~~~~~~~i 194 (263)
T CHL00200 123 LIIPDL-PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYL------VSTTGVTGLK-TELDKKLKKLI 194 (263)
T ss_pred EEecCC-CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEE------EcCCCCCCCC-ccccHHHHHHH
Confidence 456654 568999999999999999889999999755222233333444332 1123457776 68888888888
Q ss_pred HHHHHH
Q 017493 321 QRSMSE 326 (370)
Q Consensus 321 ~rAA~~ 326 (370)
+++-+.
T Consensus 195 ~~ir~~ 200 (263)
T CHL00200 195 ETIKKM 200 (263)
T ss_pred HHHHHh
Confidence 777553
No 18
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=21.26 E-value=62 Score=30.56 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=16.8
Q ss_pred EEEEeeecCCCCccccccC
Q 017493 351 ICIVNFYNTSGRLGLHQVC 369 (370)
Q Consensus 351 aCLVNfY~PGArMGLHQDr 369 (370)
+.|+..|.+|+=..||||-
T Consensus 63 tplllrY~~gdyn~LHqdl 81 (173)
T PF09859_consen 63 TPLLLRYGPGDYNCLHQDL 81 (173)
T ss_pred chhhheeCCCCccccccCC
Confidence 4678899999999999995
Done!