Query 017493
Match_columns 370
No_of_seqs 109 out of 460
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 15:19:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3q_A Alpha-ketoglutarate-dep 100.0 2.9E-30 9.9E-35 234.3 9.3 120 234-370 3-125 (211)
2 3tht_A Alkylated DNA repair pr 99.5 4.5E-14 1.5E-18 136.5 7.4 110 234-370 107-218 (345)
3 2iuw_A Alkylated repair protei 99.4 6.7E-13 2.3E-17 121.3 8.0 104 238-369 40-146 (238)
4 3s57_A Alpha-ketoglutarate-dep 99.2 5E-11 1.7E-15 106.9 7.7 104 236-369 7-120 (204)
5 2jig_A Prolyl-4 hydroxylase; h 86.0 1.3 4.5E-05 39.0 6.1 100 234-369 16-117 (224)
6 3itq_A Prolyl 4-hydroxylase, a 81.6 2.9 9.9E-05 37.8 6.6 94 236-369 37-130 (216)
7 2a1x_A Phytanoyl-COA dioxygena 71.1 16 0.00056 32.9 8.5 30 236-265 32-61 (308)
8 3dkq_A PKHD-type hydroxylase S 62.6 27 0.00092 32.1 8.2 27 235-261 16-42 (243)
9 2hbt_A EGL nine homolog 1; pro 33.3 90 0.0031 28.3 6.7 28 236-263 24-51 (247)
10 3p9a_A DNA-packaging protein G 23.3 35 0.0012 30.6 2.0 21 69-89 5-25 (162)
11 2opw_A Phyhd1 protein; double- 20.5 75 0.0026 28.1 3.6 29 237-265 14-42 (291)
No 1
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=99.96 E-value=2.9e-30 Score=234.33 Aligned_cols=120 Identities=24% Similarity=0.416 Sum_probs=110.0
Q ss_pred ceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecC-CceecCCCCc--ccccCCCCCCCC
Q 017493 234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLG-LDWDPQTRKY--GKKRQVDGCEPS 310 (370)
Q Consensus 234 ~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG-~gWdsDt~gY--~~~~P~dGapwP 310 (370)
+.|.||+++||||+. ++|++|+++|++++.+ +||++|.+|+|++|+++|+||| ++|.+|..+| ...+|.++.+||
T Consensus 3 ~~~~~g~~~~~~~~~-~~~~~l~~~~~~~~~~-~p~~~~~~pgg~~~s~~~~~~g~~~W~~d~~~Y~Ys~~~~~~~~pw~ 80 (211)
T 3i3q_A 3 EPLAAGAVILRRFAF-NAAEQLIRDINDVASQ-SPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWP 80 (211)
T ss_dssp CCCBTTBEEETTTTT-TTHHHHHHHHHHHHHH-SCCBCCBCTTSCBCSSEEEEESSBEEEEETTEEEEESBCTTTSSBCC
T ss_pred eecCCCCEEECCcCh-HHHHHHHHHHHHHHhc-CCCceeEcCCCCcCchhhcccccceeecCCCCcCcCCCccCCCCCCC
Confidence 468999999999998 6999999999999987 9999999999999999999999 9999997767 556678899999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493 311 VIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS 370 (370)
Q Consensus 311 pIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD 370 (370)
+||++|.+|++++++.+ +++.+.||+||||+|.+|++||||+|+|
T Consensus 81 ~~P~~L~~l~~~~~~~~---------------g~~~~~pn~~LvN~Y~~G~~i~~H~D~~ 125 (211)
T 3i3q_A 81 AMPQSFHNLCQRAATAA---------------GYPDFQPDACLINRYAPGAKLSLHQDKD 125 (211)
T ss_dssp CCCHHHHHHHHHHHHHT---------------TCTTCCCCEEEEEEECTTCCEEEECCCC
T ss_pred chHHHHHHHHHHHHHhc---------------CCCCcCCCEEEEEEEcCCCCcccccCCC
Confidence 99999999999998776 5677899999999999999999999964
No 2
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.47 E-value=4.5e-14 Score=136.49 Aligned_cols=110 Identities=14% Similarity=0.272 Sum_probs=65.6
Q ss_pred ceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEE-EEeecCCceecCCCCcccccCCCCCCCC-C
Q 017493 234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRL-RMMCLGLDWDPQTRKYGKKRQVDGCEPS-V 311 (370)
Q Consensus 234 ~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSV-RMmcLG~gWdsDt~gY~~~~P~dGapwP-p 311 (370)
..++||+.++|+||+.++|.+|++.|. |...+.++| +...++- ++..+|+.+ .|...++..+.+|| +
T Consensus 107 ~~lp~Gl~~~p~fis~~Ee~~Ll~~i~-w~~~~~~~~-----~~~~l~~Rr~~~yG~~Y-----~Ys~~~~~~~~p~p~~ 175 (345)
T 3tht_A 107 QALPPGLMVVEEIISSEEEKMLLESVD-WTEDTDNQN-----SQKSLKHRRVKHFGYEF-----HYENNNVDKDKPLSGG 175 (345)
T ss_dssp CSCCTTEEEETTCSCHHHHHHHHTTCC----------------------CEEECCC-----------------------C
T ss_pred ccCCCceEEEcCcCCHHHHHHHHHhcc-cCCcccccc-----CcccccCceEEEECCcc-----cccccccccCCCCCcC
Confidence 458899999999999999999888765 322222221 2233433 555677444 34334444567876 5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccCC
Q 017493 312 IPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVCS 370 (370)
Q Consensus 312 IPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDrD 370 (370)
+|++|..|++++++.. +....||+||||+|.+|++||||+|.+
T Consensus 176 ~P~~L~~l~~r~~~~~----------------~~~~~~n~~lvN~Y~~G~~I~~H~D~~ 218 (345)
T 3tht_A 176 LPDICESFLEKWLRKG----------------YIKHKPDQMTINQYEPGQGIPAHIDTH 218 (345)
T ss_dssp CCHHHHHHHHHHHHHT----------------SCSSCCSEEEEEEECTTCCEEEECCCT
T ss_pred cCHHHHHHHHHHHhcc----------------cCCCCCCEEEEEEecCCCCEeeccCCc
Confidence 9999999999886533 345789999999999999999999973
No 3
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=99.38 E-value=6.7e-13 Score=121.31 Aligned_cols=104 Identities=11% Similarity=0.071 Sum_probs=72.0
Q ss_pred CceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccC-CCceeEE-EEeecCCceecCCCCcccccCCCCCCCCCCCHH
Q 017493 238 PGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYN-DGAKLRL-RMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSE 315 (370)
Q Consensus 238 PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tP-gG~~MSV-RMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~ 315 (370)
||+.++|+||++++|.+|+++|++- .||+++..+ .|..+.+ |++| -+++ ....|....+ .+-|++|++
T Consensus 40 ~gl~~~~~fl~~~e~~~Ll~~l~~~----~~w~~~~~~~~g~~~~~~R~~~-~~g~--~~Y~Ys~~~~---~~~p~wp~~ 109 (238)
T 2iuw_A 40 SRVCLYPGFVDVKEADWILEQLCQD----VPWKQRTGIREDITYQQPRLTA-WYGE--LPYTYSRITM---EPNPHWHPV 109 (238)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHHHH----SCCBCCEEESSSCEEECSSEEE-EEEC--CCTTSCHHHH---CCBSSCCHH
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHh----CCCccCceecCCcccccCCeeE-EcCC--CccccCCccc---CCCCCCCHH
Confidence 5799999999999999999999652 335544432 3656655 4444 1122 1113432222 344678999
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCC-CccccccC
Q 017493 316 FKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSG-RLGLHQVC 369 (370)
Q Consensus 316 L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGA-rMGLHQDr 369 (370)
|..|.+++.+.+ ...||+||||+|.+|+ +||||+|.
T Consensus 110 l~~l~~~~~~~~------------------g~~~n~~LvN~Y~~G~d~i~~H~D~ 146 (238)
T 2iuw_A 110 LRTLKNRIEENT------------------GHTFNSLLCNLYRNEKDSVDWHSDD 146 (238)
T ss_dssp HHHHHHHHHHHH------------------SCCCCEEEEEEECSTTCCEEEECCC
T ss_pred HHHHHHHHHHHh------------------CCCCCEEEEEEECCCCCceeCCcCC
Confidence 999887765544 2579999999999997 99999996
No 4
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=99.15 E-value=5e-11 Score=106.90 Aligned_cols=104 Identities=10% Similarity=0.044 Sum_probs=73.0
Q ss_pred ecCc-eEEcCCCCCHHHHHHHHHHHHhhcCCCCCCccc---ccC-CCceeEE-EEeecCCceecCCC-Cc--ccccCCCC
Q 017493 236 LRPG-MVLLKHYLTIREQILIVRICQELGKGPGGFYQP---GYN-DGAKLRL-RMMCLGLDWDPQTR-KY--GKKRQVDG 306 (370)
Q Consensus 236 L~PG-mVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P---~tP-gG~~MSV-RMmcLG~gWdsDt~-gY--~~~~P~dG 306 (370)
-.+| .+++|+||++++|.+|++++++ . .++++| .++ .|+.+.+ |+++ |..+.. .| ....+
T Consensus 7 ~~~~~~~~~~~~l~~~~a~~l~~~l~~---~-~~w~~~~~~~~~~~gk~~~~pR~~~----wyg~~~~~Y~Ysg~~~--- 75 (204)
T 3s57_A 7 RAEGLDSSYTVLFGKAEADEIFQELEK---E-VEYFTGALARVQVFGKWHSVPRKQA----TYGDAGLTYTFSGLTL--- 75 (204)
T ss_dssp EETTEEEEEEECSCHHHHHHHHHHHHH---H-CCCCCGGGGEEEETTEEEECSSEEE----EEECTTCCEEETTEEE---
T ss_pred eeCCceEEecCcCCHHHHHHHHHHHHH---h-CCCCCcccceEEECCeEeccCcEEE----EECCCCCCcccCCCcc---
Confidence 3467 6789999999999999999977 2 456433 222 4777777 6654 444331 34 22221
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCC-CccccccC
Q 017493 307 CEPSVIPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSG-RLGLHQVC 369 (370)
Q Consensus 307 apwPpIPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGA-rMGLHQDr 369 (370)
.+.++|++|..|.+++.+.+ ...||+||||+|.+|+ +||||+|.
T Consensus 76 -~~~pwp~~L~~l~~~~~~~~------------------g~~~n~~LvN~Y~~G~d~i~~H~D~ 120 (204)
T 3s57_A 76 -SPKPWIPVLERIRDHVSGVT------------------GQTFNFVLINRYKDGSDHICEHRDD 120 (204)
T ss_dssp -CCEECCHHHHHHHHHHHHHH------------------CCCCSEEEEEEESSTTCCEEEECCC
T ss_pred -cCCCCCHHHHHHHHHHHHHh------------------CCCCceeEEEEECCCCCcccceecC
Confidence 12356778888887776554 3689999999999999 99999996
No 5
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=85.95 E-value=1.3 Score=38.96 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=56.9
Q ss_pred ceecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeE--EEEeecCCceecCCCCcccccCCCCCCCCC
Q 017493 234 GILRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLR--LRMMCLGLDWDPQTRKYGKKRQVDGCEPSV 311 (370)
Q Consensus 234 ~~L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MS--VRMmcLG~gWdsDt~gY~~~~P~dGapwPp 311 (370)
..+.|-++++++||++++-..|++.+... ..++....+.+ |.... +| ++-+ .|..+ .
T Consensus 16 ls~~P~i~~~~~fLs~~Ec~~li~~~~~~-~~~s~v~~~~~--g~~~~~~~R-~s~~-~~l~~----------------~ 74 (224)
T 2jig_A 16 LSWSPRAFLLKNFLSDEECDYIVEKARPK-MVKSSVVDNES--GKSVDSEIR-TSTG-TWFAK----------------G 74 (224)
T ss_dssp EETTTTEEEETTCSCHHHHHHHHHHHGGG-CEECEEEETTT--TEEEECSSB-CSEE-EECCT----------------T
T ss_pred EeCCCCEEEEcccCCHHHHHHHHHHhhcc-CeeeeeecCCC--CcccccCCE-EEee-eEecC----------------C
Confidence 44678999999999998888888888652 11122211111 11100 00 0000 12111 0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccC
Q 017493 312 IPSEFKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVC 369 (370)
Q Consensus 312 IPe~L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDr 369 (370)
-.+.+..|.+++.+.. ++|...-+-..|..|.+|+.-+.|.|-
T Consensus 75 ~~~~~~~i~~ri~~~~---------------gl~~~~~e~~qv~rY~~G~~y~~H~D~ 117 (224)
T 2jig_A 75 EDSVISKIEKRVAQVT---------------MIPLENHEGLQVLHYHDGQKYEPHYDY 117 (224)
T ss_dssp CSHHHHHHHHHHHHHH---------------TCCGGGBCCCEEEEEETTCCEEEECCS
T ss_pred CCHHHHHHHHHHHHHh---------------CCCcccccceEEEecCCCccccCcccC
Confidence 1334666777766554 344333455778899999999999993
No 6
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=81.63 E-value=2.9 Score=37.77 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=56.5
Q ss_pred ecCceEEcCCCCCHHHHHHHHHHHHhhcCCCCCCcccccCCCceeEEEEeecCCceecCCCCcccccCCCCCCCCCCCHH
Q 017493 236 LRPGMVLLKHYLTIREQILIVRICQELGKGPGGFYQPGYNDGAKLRLRMMCLGLDWDPQTRKYGKKRQVDGCEPSVIPSE 315 (370)
Q Consensus 236 L~PGmVlLPGfLS~~eQqaLV~~~ReL~~gPaPFr~P~tPgG~~MSVRMmcLG~gWdsDt~gY~~~~P~dGapwPpIPe~ 315 (370)
..|.++++++||+++|-..|++.+.... .++. + |.+ .....|+.- .+.-.+. .+.
T Consensus 37 ~~P~i~~~~~fLs~~Ec~~Li~~a~~~l-~~s~-----v-------------~~~--~~~~~~RtS---~~~wl~~-~~~ 91 (216)
T 3itq_A 37 EEPLIVVLGNVLSDEECDELIELSKSKL-ARSK-----V-------------GSS--RDVNDIRTS---SGAFLDD-NEL 91 (216)
T ss_dssp TTTTEEEEESCSCHHHHHHHHHHHHHHH-C----------------------------CCCCGGGT---TCEECCC-CHH
T ss_pred CCCCEEEECCcCCHHHHHHHHHHhhccc-ccce-----e-------------ccC--CccCCcEee---eeEEeCC-cHH
Confidence 4699999999999999999988876431 1111 1 000 011122111 1111112 556
Q ss_pred HHHHHHHHHHHHHHhhhhccccccccccCCCCCCcEEEEeeecCCCCccccccC
Q 017493 316 FKQLVQRSMSEAHALIKMDSKVSNVEDILPALSPDICIVNFYNTSGRLGLHQVC 369 (370)
Q Consensus 316 L~~La~rAA~~A~al~~~~~~~~~~~~g~p~~~PDaCLVNfY~PGArMGLHQDr 369 (370)
...|.+++++.. +++-..-+..-|..|.+|+.-.+|.|-
T Consensus 92 v~~i~~Ri~~~~---------------gl~~~~~E~lqv~~Y~~G~~y~~H~D~ 130 (216)
T 3itq_A 92 TAKIEKRISSIM---------------NVPASHGEGLHILNYEVDQQYKAHYDY 130 (216)
T ss_dssp HHHHHHHHHHHH---------------TSCGGGBCCCEEEEECBTCCEEEECSS
T ss_pred HHHHHHHHHHhc---------------CceeccccceeEEEeCCCCccccccCC
Confidence 677888887766 333233455678889999999999984
No 7
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9
Probab=71.06 E-value=16 Score=32.88 Aligned_cols=30 Identities=7% Similarity=0.124 Sum_probs=24.8
Q ss_pred ecCceEEcCCCCCHHHHHHHHHHHHhhcCC
Q 017493 236 LRPGMVLLKHYLTIREQILIVRICQELGKG 265 (370)
Q Consensus 236 L~PGmVlLPGfLS~~eQqaLV~~~ReL~~g 265 (370)
-..|+++++++|++++=.+|.+++.++...
T Consensus 32 ~~dGyvvl~~~l~~e~v~~l~~~~~~~~~~ 61 (308)
T 2a1x_A 32 EENGFLVIKNLVPDADIQRFRNEFEKICRK 61 (308)
T ss_dssp HHHSEEEETTCSCHHHHHHHHHHHHHHHTT
T ss_pred HhCCEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 346999999999998888888888887654
No 8
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=62.58 E-value=27 Score=32.13 Aligned_cols=27 Identities=4% Similarity=0.041 Sum_probs=22.1
Q ss_pred eecCceEEcCCCCCHHHHHHHHHHHHh
Q 017493 235 ILRPGMVLLKHYLTIREQILIVRICQE 261 (370)
Q Consensus 235 ~L~PGmVlLPGfLS~~eQqaLV~~~Re 261 (370)
...+++++++++|++++=++|++.+.+
T Consensus 16 ~~~~~i~~i~dvLs~~Ec~~li~~~e~ 42 (243)
T 3dkq_A 16 YFQGMLIEIPNVFSKQEVSHLREQLDA 42 (243)
T ss_dssp CCBTTBEEECCSSCHHHHHHHHHHHHT
T ss_pred ccCCCEEEECCCCCHHHHHHHHHHHhh
Confidence 356799999999999888888877753
No 9
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=33.32 E-value=90 Score=28.26 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=24.6
Q ss_pred ecCceEEcCCCCCHHHHHHHHHHHHhhc
Q 017493 236 LRPGMVLLKHYLTIREQILIVRICQELG 263 (370)
Q Consensus 236 L~PGmVlLPGfLS~~eQqaLV~~~ReL~ 263 (370)
..+|.+++++||++++-++|++.+..+.
T Consensus 24 ~~~g~~Vid~fLs~ee~~~L~~~~~~~~ 51 (247)
T 2hbt_A 24 NKHGICVVDDFLGKETGQQIGDEVRALH 51 (247)
T ss_dssp HHTSEEEESSSSCHHHHHHHHHHHHHHH
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHhhh
Confidence 4479999999999999999999998865
No 10
>3p9a_A DNA-packaging protein GP3; terminase small subunit, bacteriophage P22, D binding protein; 1.75A {Enterobacteria phage P22}
Probab=23.31 E-value=35 Score=30.55 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=17.8
Q ss_pred CcCcccccCCCCCCCcccccc
Q 017493 69 SGNEFYSSRGKNGRNRSRMSK 89 (370)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~ 89 (370)
-||.||-.|++.||++--++.
T Consensus 5 ~gn~fw~~Rs~~GR~p~f~tP 25 (162)
T 3p9a_A 5 KGNRFWEARSSHGRNPKFESP 25 (162)
T ss_dssp CCCCGGGCCCTTCSSCCCCSH
T ss_pred cccHHHHHHhhcCCCCCcCCH
Confidence 589999999999999866553
No 11
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=20.47 E-value=75 Score=28.13 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=24.1
Q ss_pred cCceEEcCCCCCHHHHHHHHHHHHhhcCC
Q 017493 237 RPGMVLLKHYLTIREQILIVRICQELGKG 265 (370)
Q Consensus 237 ~PGmVlLPGfLS~~eQqaLV~~~ReL~~g 265 (370)
..|+++++++|++++=.+|.+++.++...
T Consensus 14 ~dGyvvl~~~l~~e~v~~l~~~~~~~~~~ 42 (291)
T 2opw_A 14 QDGFLVLEGFLSAEECVAMQQRIGEIVAE 42 (291)
T ss_dssp HHSEEEETTSSCHHHHHHHHHHHHHHHHT
T ss_pred hCCEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 36999999999998888888888776544
Done!